Query 048117
Match_columns 352
No_of_seqs 368 out of 3114
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 10:52:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.7E-32 1.6E-36 253.9 21.0 209 3-212 13-245 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.3E-31 1.5E-35 247.4 19.5 192 32-224 7-216 (501)
3 2xpi_A Anaphase-promoting comp 99.9 1.4E-23 4.8E-28 201.4 9.9 304 12-327 269-578 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.1E-21 3.6E-26 188.3 15.6 297 12-327 147-503 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 3.7E-22 1.3E-26 193.4 10.7 161 13-174 125-306 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.8 2.9E-21 1E-25 187.2 7.2 147 46-197 127-286 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.7 2.3E-16 8E-21 143.1 13.6 198 12-213 64-267 (388)
8 2y4t_A DNAJ homolog subfamily 99.6 3.3E-15 1.1E-19 137.9 16.9 196 13-212 24-240 (450)
9 1w3b_A UDP-N-acetylglucosamine 99.6 6.7E-14 2.3E-18 126.8 23.4 193 15-211 169-367 (388)
10 4eqf_A PEX5-related protein; a 99.6 9.7E-14 3.3E-18 124.6 21.0 198 13-212 97-310 (365)
11 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.3E-18 115.0 19.3 195 12-210 2-212 (217)
12 2vq2_A PILW, putative fimbrial 99.6 5.7E-13 2E-17 110.5 22.2 199 13-213 6-212 (225)
13 2y4t_A DNAJ homolog subfamily 99.6 3E-13 1E-17 124.7 22.3 206 3-213 49-287 (450)
14 2ho1_A Type 4 fimbrial biogene 99.6 4.6E-13 1.6E-17 113.5 21.6 197 15-213 37-239 (252)
15 3mkr_A Coatomer subunit epsilo 99.6 3.3E-13 1.1E-17 117.7 19.8 193 12-213 62-265 (291)
16 3mkr_A Coatomer subunit epsilo 99.5 4.5E-13 1.5E-17 116.9 18.4 190 17-213 36-230 (291)
17 1fch_A Peroxisomal targeting s 99.5 8.8E-13 3E-17 118.2 20.8 195 17-212 66-314 (368)
18 2q7f_A YRRB protein; TPR, prot 99.5 3.6E-13 1.2E-17 113.3 16.9 198 13-213 21-223 (243)
19 3hym_B Cell division cycle pro 99.5 1.9E-12 6.4E-17 113.9 21.9 197 13-212 88-299 (330)
20 2gw1_A Mitochondrial precursor 99.5 2.6E-13 8.9E-18 127.1 16.9 308 3-327 29-443 (514)
21 4eqf_A PEX5-related protein; a 99.5 4.8E-13 1.6E-17 120.1 17.6 196 14-213 64-277 (365)
22 3hym_B Cell division cycle pro 99.5 2.3E-12 8E-17 113.3 21.6 200 10-212 17-222 (330)
23 3uq3_A Heat shock protein STI1 99.5 5.1E-12 1.7E-16 107.0 20.9 197 16-212 6-236 (258)
24 3cv0_A Peroxisome targeting si 99.5 3.1E-12 1.1E-16 112.3 19.6 196 14-213 54-270 (327)
25 1fch_A Peroxisomal targeting s 99.5 6E-12 2E-16 112.7 20.5 186 24-212 34-280 (368)
26 3ieg_A DNAJ homolog subfamily 99.5 1.5E-11 5.3E-16 109.2 22.7 196 14-213 2-218 (359)
27 2gw1_A Mitochondrial precursor 99.4 1.4E-11 4.8E-16 115.2 20.9 205 4-213 261-479 (514)
28 3ieg_A DNAJ homolog subfamily 99.4 6.9E-11 2.4E-15 104.9 23.4 205 4-213 27-264 (359)
29 3cv0_A Peroxisome targeting si 99.4 1.3E-11 4.5E-16 108.3 17.6 197 14-213 20-236 (327)
30 3fp2_A TPR repeat-containing p 99.4 7.2E-12 2.5E-16 118.1 16.4 206 4-213 49-374 (537)
31 3vtx_A MAMA; tetratricopeptide 99.4 9.3E-11 3.2E-15 94.4 20.4 165 45-212 4-170 (184)
32 1b89_A Protein (clathrin heavy 99.4 3E-13 1E-17 122.1 6.0 179 14-211 31-235 (449)
33 2ho1_A Type 4 fimbrial biogene 99.4 1E-10 3.6E-15 98.9 20.4 173 12-186 68-246 (252)
34 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.9E-11 9.9E-16 103.5 16.9 195 14-213 42-245 (275)
35 3u4t_A TPR repeat-containing p 99.4 1.1E-10 3.7E-15 99.9 20.2 195 16-212 4-208 (272)
36 1b89_A Protein (clathrin heavy 99.4 7.4E-13 2.5E-17 119.6 6.7 161 26-209 14-174 (449)
37 3nf1_A KLC 1, kinesin light ch 99.4 3E-11 1E-15 105.2 16.9 198 14-211 26-306 (311)
38 4abn_A Tetratricopeptide repea 99.3 9.6E-12 3.3E-16 116.0 14.1 192 13-208 100-317 (474)
39 2q7f_A YRRB protein; TPR, prot 99.3 8.3E-11 2.8E-15 98.7 18.7 175 12-189 54-233 (243)
40 3fp2_A TPR repeat-containing p 99.3 7.8E-11 2.7E-15 110.9 20.3 199 12-213 273-492 (537)
41 2vq2_A PILW, putative fimbrial 99.3 2E-10 6.8E-15 94.9 20.2 166 45-213 7-177 (225)
42 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 93.8 18.0 167 13-182 3-174 (184)
43 3as5_A MAMA; tetratricopeptide 99.3 1.4E-10 4.9E-15 92.6 17.4 160 16-210 9-171 (186)
44 3as5_A MAMA; tetratricopeptide 99.3 2.1E-10 7.3E-15 91.6 17.6 128 13-143 40-170 (186)
45 1ouv_A Conserved hypothetical 99.3 1.8E-09 6.1E-14 92.6 24.1 191 14-214 5-217 (273)
46 2pl2_A Hypothetical conserved 99.3 2.2E-10 7.5E-15 95.2 17.3 166 44-213 3-181 (217)
47 3uq3_A Heat shock protein STI1 99.3 2.4E-10 8.1E-15 96.6 17.4 173 3-179 28-237 (258)
48 1ouv_A Conserved hypothetical 99.3 2.1E-09 7.2E-14 92.2 22.8 193 13-214 36-253 (273)
49 4gyw_A UDP-N-acetylglucosamine 99.3 1.2E-10 4.3E-15 113.4 16.7 162 45-211 8-173 (723)
50 1xnf_A Lipoprotein NLPI; TPR, 99.2 3.7E-10 1.3E-14 96.5 17.5 182 27-212 17-206 (275)
51 2ond_A Cleavage stimulation fa 99.2 1.2E-09 4.3E-14 95.6 20.8 199 12-214 47-272 (308)
52 4i17_A Hypothetical protein; T 99.2 3.1E-09 1E-13 88.6 19.7 189 13-212 5-209 (228)
53 2h6f_A Protein farnesyltransfe 99.2 3.9E-10 1.3E-14 101.8 15.2 192 15-209 97-302 (382)
54 2ond_A Cleavage stimulation fa 99.2 5.6E-09 1.9E-13 91.5 22.1 198 15-216 8-237 (308)
55 4abn_A Tetratricopeptide repea 99.2 5.2E-10 1.8E-14 104.2 15.9 179 31-213 84-288 (474)
56 3u4t_A TPR repeat-containing p 99.2 1E-09 3.5E-14 93.7 15.7 197 14-213 36-251 (272)
57 3edt_B KLC 2, kinesin light ch 99.1 1.7E-09 5.6E-14 92.5 16.5 197 15-211 43-280 (283)
58 2h6f_A Protein farnesyltransfe 99.1 1.7E-09 5.7E-14 97.7 17.1 195 14-212 130-348 (382)
59 4i17_A Hypothetical protein; T 99.1 3.4E-09 1.1E-13 88.3 17.8 153 44-199 5-169 (228)
60 2ooe_A Cleavage stimulation fa 99.1 2.3E-08 7.9E-13 94.4 22.5 195 13-212 270-492 (530)
61 1qqe_A Vesicular transport pro 99.1 6.4E-09 2.2E-13 90.4 16.5 194 16-209 38-266 (292)
62 3nf1_A KLC 1, kinesin light ch 99.0 2.3E-09 7.7E-14 93.2 13.2 168 45-212 26-224 (311)
63 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.7E-13 76.8 15.4 126 49-177 4-131 (136)
64 4gyw_A UDP-N-acetylglucosamine 99.0 5.3E-09 1.8E-13 101.9 16.3 159 14-177 8-173 (723)
65 2fo7_A Synthetic consensus TPR 99.0 1.4E-08 4.8E-13 76.1 14.7 129 83-213 3-133 (136)
66 3qky_A Outer membrane assembly 99.0 1.2E-07 4.2E-12 80.5 21.6 182 14-213 14-225 (261)
67 3sf4_A G-protein-signaling mod 99.0 1.3E-08 4.4E-13 91.9 15.1 126 84-209 190-333 (406)
68 4a1s_A PINS, partner of inscut 99.0 8.3E-09 2.9E-13 93.7 13.7 196 16-211 87-331 (411)
69 3ro2_A PINS homolog, G-protein 98.9 6.4E-09 2.2E-13 91.0 12.2 195 15-209 43-289 (338)
70 3qky_A Outer membrane assembly 98.9 6.7E-08 2.3E-12 82.2 18.1 149 15-184 52-230 (261)
71 4a1s_A PINS, partner of inscut 98.9 8E-09 2.7E-13 93.8 13.0 199 14-212 125-372 (411)
72 3ro2_A PINS homolog, G-protein 98.9 2E-08 6.8E-13 87.8 15.0 196 16-211 6-251 (338)
73 3sf4_A G-protein-signaling mod 98.9 1.5E-08 5E-13 91.5 14.4 200 12-211 6-255 (406)
74 3edt_B KLC 2, kinesin light ch 98.9 7.1E-09 2.4E-13 88.5 11.6 147 31-177 24-197 (283)
75 3mv2_B Coatomer subunit epsilo 98.9 9.8E-08 3.3E-12 82.6 18.1 162 45-211 99-281 (310)
76 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.7E-07 1.3E-11 75.9 20.8 181 15-215 4-216 (225)
77 3ulq_A Response regulator aspa 98.9 3.1E-08 1.1E-12 89.3 14.8 196 15-211 143-367 (383)
78 3mv2_B Coatomer subunit epsilo 98.9 8.5E-08 2.9E-12 83.0 16.4 165 12-183 97-287 (310)
79 3qou_A Protein YBBN; thioredox 98.8 7.6E-08 2.6E-12 83.4 15.3 176 31-210 102-282 (287)
80 2pzi_A Probable serine/threoni 98.8 1.7E-08 5.9E-13 98.2 11.6 169 26-198 402-583 (681)
81 2ooe_A Cleavage stimulation fa 98.8 1.9E-07 6.4E-12 88.1 18.1 194 16-213 231-455 (530)
82 3q15_A PSP28, response regulat 98.8 2.8E-07 9.6E-12 82.9 17.6 196 15-211 141-364 (378)
83 4g1t_A Interferon-induced prot 98.8 4.3E-07 1.5E-11 83.9 19.2 198 13-213 49-277 (472)
84 1qqe_A Vesicular transport pro 98.8 1.6E-07 5.6E-12 81.4 15.2 171 30-211 32-227 (292)
85 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8.5E-07 2.9E-11 72.5 18.7 91 18-109 9-99 (213)
86 3ulq_A Response regulator aspa 98.8 2.9E-07 9.9E-12 82.9 17.2 189 21-209 109-332 (383)
87 2vsy_A XCC0866; transferase, g 98.8 1.1E-07 3.7E-12 90.6 14.9 160 28-190 2-169 (568)
88 3rjv_A Putative SEL1 repeat pr 98.8 1.3E-06 4.5E-11 71.8 19.7 174 33-215 4-200 (212)
89 2vsy_A XCC0866; transferase, g 98.8 2.1E-07 7.2E-12 88.6 16.5 127 14-143 22-154 (568)
90 2xm6_A Protein corresponding t 98.8 4.8E-06 1.6E-10 77.6 25.5 192 14-214 110-327 (490)
91 1xi4_A Clathrin heavy chain; a 98.8 8.5E-07 2.9E-11 89.9 21.0 179 14-210 1104-1307(1630)
92 1hz4_A MALT regulatory protein 98.7 1.6E-06 5.6E-11 77.5 21.3 195 17-211 55-281 (373)
93 2yhc_A BAMD, UPF0169 lipoprote 98.7 4.3E-07 1.5E-11 75.4 15.8 148 15-183 41-218 (225)
94 2xm6_A Protein corresponding t 98.7 4E-06 1.4E-10 78.2 24.0 192 14-214 74-290 (490)
95 1hz4_A MALT regulatory protein 98.7 3.8E-06 1.3E-10 75.1 22.7 196 16-211 94-321 (373)
96 2ifu_A Gamma-SNAP; membrane fu 98.7 5.3E-07 1.8E-11 78.8 15.8 187 16-205 37-254 (307)
97 4g1t_A Interferon-induced prot 98.7 5.6E-07 1.9E-11 83.1 16.7 198 14-215 208-462 (472)
98 4ga2_A E3 SUMO-protein ligase 98.7 1.6E-08 5.6E-13 78.6 5.3 136 58-197 9-148 (150)
99 1hh8_A P67PHOX, NCF-2, neutrop 98.7 9.7E-07 3.3E-11 72.2 16.1 131 46-182 6-154 (213)
100 2r5s_A Uncharacterized protein 98.7 1.5E-07 5.1E-12 75.0 10.7 152 18-174 9-169 (176)
101 3urz_A Uncharacterized protein 98.7 8.1E-07 2.8E-11 72.9 15.3 158 20-181 9-189 (208)
102 2r5s_A Uncharacterized protein 98.7 5E-07 1.7E-11 71.9 13.5 159 48-211 8-172 (176)
103 3u3w_A Transcriptional activat 98.6 5.7E-06 1.9E-10 71.5 20.2 196 11-211 42-265 (293)
104 3qou_A Protein YBBN; thioredox 98.6 5.8E-07 2E-11 77.7 13.3 162 11-176 113-282 (287)
105 3q15_A PSP28, response regulat 98.6 3E-06 1E-10 76.1 18.4 186 23-208 109-328 (378)
106 2qfc_A PLCR protein; TPR, HTH, 98.6 3E-06 1E-10 73.3 17.4 166 45-210 74-264 (293)
107 2pzi_A Probable serine/threoni 98.6 1.8E-07 6.3E-12 91.0 10.0 152 57-212 402-563 (681)
108 1xi4_A Clathrin heavy chain; a 98.6 6.1E-06 2.1E-10 83.8 20.8 144 45-209 1104-1247(1630)
109 1na0_A Designed protein CTPR3; 98.6 1.5E-06 5.2E-11 63.8 12.8 109 83-193 11-121 (125)
110 3gyz_A Chaperone protein IPGC; 98.5 7E-07 2.4E-11 69.3 10.3 101 113-213 31-134 (151)
111 1a17_A Serine/threonine protei 98.5 3.1E-06 1E-10 65.9 14.2 125 84-210 16-144 (166)
112 4ga2_A E3 SUMO-protein ligase 98.5 1.5E-07 5.3E-12 73.0 6.4 121 89-212 5-129 (150)
113 2c2l_A CHIP, carboxy terminus 98.5 6.5E-07 2.2E-11 77.2 11.0 192 14-212 3-199 (281)
114 3urz_A Uncharacterized protein 98.5 3.2E-06 1.1E-10 69.2 14.6 161 48-213 6-187 (208)
115 3rjv_A Putative SEL1 repeat pr 98.5 1.5E-05 5.3E-10 65.3 18.7 163 13-180 16-199 (212)
116 3gw4_A Uncharacterized protein 98.5 1.9E-06 6.4E-11 69.7 12.6 152 26-177 3-175 (203)
117 2ifu_A Gamma-SNAP; membrane fu 98.5 1.2E-06 4.2E-11 76.4 12.2 162 48-210 38-222 (307)
118 2qfc_A PLCR protein; TPR, HTH, 98.5 4.1E-06 1.4E-10 72.4 14.9 160 18-177 78-265 (293)
119 4gco_A Protein STI-1; structur 98.5 1.2E-06 4E-11 65.7 10.0 93 119-211 15-109 (126)
120 3u3w_A Transcriptional activat 98.5 2E-05 6.8E-10 68.1 19.0 157 21-177 81-265 (293)
121 1na0_A Designed protein CTPR3; 98.4 7E-06 2.4E-10 60.2 13.7 93 15-108 9-104 (125)
122 1p5q_A FKBP52, FK506-binding p 98.4 1.6E-06 5.3E-11 76.9 11.8 126 82-210 148-292 (336)
123 2vyi_A SGTA protein; chaperone 98.4 3E-06 1E-10 62.8 11.7 114 83-198 14-129 (131)
124 1a17_A Serine/threonine protei 98.4 6.4E-06 2.2E-10 64.0 14.1 127 47-176 14-144 (166)
125 4gco_A Protein STI-1; structur 98.4 2.5E-06 8.7E-11 63.9 11.0 105 83-189 15-121 (126)
126 2lni_A Stress-induced-phosphop 98.4 3.8E-06 1.3E-10 62.6 12.0 95 46-143 16-110 (133)
127 2vgx_A Chaperone SYCD; alterna 98.4 8.9E-07 3E-11 68.5 8.5 96 117-212 21-118 (148)
128 3e4b_A ALGK; tetratricopeptide 98.4 3.7E-05 1.3E-09 70.9 20.4 191 15-215 141-354 (452)
129 4e6h_A MRNA 3'-END-processing 98.3 1.3E-05 4.3E-10 77.4 16.5 202 12-214 340-572 (679)
130 3gw4_A Uncharacterized protein 98.3 2.3E-05 7.9E-10 63.1 15.1 155 56-211 2-175 (203)
131 2xcb_A PCRH, regulatory protei 98.3 5.2E-06 1.8E-10 63.4 10.4 96 117-212 18-115 (142)
132 3gyz_A Chaperone protein IPGC; 98.3 1E-05 3.4E-10 62.7 12.0 104 77-182 31-137 (151)
133 2lni_A Stress-induced-phosphop 98.3 1.8E-05 6.2E-10 58.8 13.2 117 12-131 13-132 (133)
134 2e2e_A Formate-dependent nitri 98.3 2.7E-06 9.4E-11 67.4 8.5 117 94-212 23-144 (177)
135 2kck_A TPR repeat; tetratricop 98.3 6.1E-06 2.1E-10 59.3 9.7 97 117-213 6-107 (112)
136 4f3v_A ESX-1 secretion system 98.3 1.3E-05 4.6E-10 68.3 12.9 182 27-213 18-238 (282)
137 2vyi_A SGTA protein; chaperone 98.3 2.1E-05 7.3E-10 58.0 12.8 114 15-131 12-128 (131)
138 3e4b_A ALGK; tetratricopeptide 98.2 0.00035 1.2E-08 64.3 23.1 192 12-215 173-390 (452)
139 4b4t_Q 26S proteasome regulato 98.2 4.7E-05 1.6E-09 69.2 16.8 190 22-211 11-244 (434)
140 2xcb_A PCRH, regulatory protei 98.2 1.3E-05 4.3E-10 61.2 11.0 100 84-185 21-122 (142)
141 3upv_A Heat shock protein STI1 98.2 1.2E-05 4E-10 59.8 10.5 95 118-212 5-101 (126)
142 1elw_A TPR1-domain of HOP; HOP 98.2 2.8E-05 9.7E-10 56.2 12.4 94 47-143 5-98 (118)
143 3q49_B STIP1 homology and U bo 98.2 1.8E-05 6.3E-10 59.4 11.7 97 116-212 8-106 (137)
144 2e2e_A Formate-dependent nitri 98.2 1.3E-05 4.5E-10 63.4 11.2 123 58-183 22-149 (177)
145 2dba_A Smooth muscle cell asso 98.2 2.1E-05 7.3E-10 59.7 12.1 95 117-211 28-127 (148)
146 2vgx_A Chaperone SYCD; alterna 98.2 1.9E-05 6.6E-10 60.8 11.7 92 48-142 23-114 (148)
147 3sz7_A HSC70 cochaperone (SGT) 98.2 1.1E-05 3.7E-10 63.1 10.1 94 118-211 12-107 (164)
148 1elw_A TPR1-domain of HOP; HOP 98.2 1.8E-05 6.3E-10 57.2 10.8 100 82-183 5-106 (118)
149 1p5q_A FKBP52, FK506-binding p 98.2 2.1E-05 7.3E-10 69.5 13.0 128 45-176 146-292 (336)
150 2fbn_A 70 kDa peptidylprolyl i 98.2 2.7E-06 9.4E-11 68.9 6.6 176 18-214 7-188 (198)
151 2fbn_A 70 kDa peptidylprolyl i 98.2 2.3E-05 7.9E-10 63.3 12.1 122 90-213 13-152 (198)
152 1hxi_A PEX5, peroxisome target 98.2 9.9E-06 3.4E-10 60.1 9.0 94 119-212 19-114 (121)
153 2dba_A Smooth muscle cell asso 98.2 4.1E-05 1.4E-09 58.1 12.6 95 45-143 27-125 (148)
154 3sz7_A HSC70 cochaperone (SGT) 98.1 2.1E-05 7.1E-10 61.5 11.0 103 81-185 11-115 (164)
155 4e6h_A MRNA 3'-END-processing 98.1 6.2E-05 2.1E-09 72.7 16.2 186 3-193 367-584 (679)
156 3upv_A Heat shock protein STI1 98.1 2.3E-05 7.9E-10 58.1 10.5 91 87-179 10-102 (126)
157 2kck_A TPR repeat; tetratricop 98.1 1.7E-05 5.8E-10 56.9 8.7 92 87-180 12-108 (112)
158 2xev_A YBGF; tetratricopeptide 98.1 3.8E-05 1.3E-09 56.9 10.4 90 123-212 8-105 (129)
159 4gcn_A Protein STI-1; structur 98.1 2.9E-05 9.8E-10 58.0 9.7 96 47-143 9-109 (127)
160 3ro3_A PINS homolog, G-protein 98.1 7.6E-05 2.6E-09 57.1 12.5 126 16-141 10-153 (164)
161 1elr_A TPR2A-domain of HOP; HO 98.0 3.6E-05 1.2E-09 56.8 10.1 57 50-107 8-64 (131)
162 3dra_A Protein farnesyltransfe 98.0 0.00033 1.1E-08 60.8 17.4 195 14-211 66-286 (306)
163 4gcn_A Protein STI-1; structur 98.0 1.8E-05 6.2E-10 59.2 8.2 93 119-211 10-111 (127)
164 1elr_A TPR2A-domain of HOP; HO 98.0 2.4E-05 8.2E-10 57.8 8.7 108 81-191 4-120 (131)
165 3ro3_A PINS homolog, G-protein 98.0 3.6E-05 1.2E-09 59.0 9.9 96 47-142 10-114 (164)
166 3q49_B STIP1 homology and U bo 98.0 6.5E-05 2.2E-09 56.3 11.1 96 45-143 8-103 (137)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.2E-05 2.5E-09 69.0 12.9 94 117-210 317-413 (457)
168 1wao_1 Serine/threonine protei 98.0 1.9E-05 6.5E-10 73.3 8.7 115 91-207 16-134 (477)
169 4f3v_A ESX-1 secretion system 98.0 6E-05 2.1E-09 64.3 10.8 135 50-189 106-247 (282)
170 3n71_A Histone lysine methyltr 97.9 0.00019 6.6E-09 66.5 15.0 123 90-212 318-464 (490)
171 2c2l_A CHIP, carboxy terminus 97.9 9.1E-05 3.1E-09 63.6 11.0 102 80-183 3-106 (281)
172 2xev_A YBGF; tetratricopeptide 97.9 0.00023 8E-09 52.5 12.0 93 89-183 10-110 (129)
173 4b4t_Q 26S proteasome regulato 97.9 0.00026 8.9E-09 64.2 14.3 158 54-211 12-203 (434)
174 2if4_A ATFKBP42; FKBP-like, al 97.9 6.3E-05 2.2E-09 66.5 9.8 147 46-212 179-328 (338)
175 1ihg_A Cyclophilin 40; ppiase 97.8 0.00016 5.6E-09 64.7 11.9 136 47-204 224-362 (370)
176 3k9i_A BH0479 protein; putativ 97.8 3.2E-05 1.1E-09 56.7 5.4 87 94-181 3-93 (117)
177 1hxi_A PEX5, peroxisome target 97.8 0.00025 8.7E-09 52.3 10.3 26 47-72 52-77 (121)
178 3k9i_A BH0479 protein; putativ 97.8 4E-05 1.4E-09 56.2 5.7 83 59-143 3-87 (117)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00043 1.5E-08 63.8 13.9 127 45-175 267-412 (457)
180 3rkv_A Putative peptidylprolyl 97.7 0.00011 3.8E-09 57.1 8.5 63 150-212 64-126 (162)
181 2if4_A ATFKBP42; FKBP-like, al 97.7 5.1E-05 1.8E-09 67.1 7.0 113 83-212 181-293 (338)
182 2hr2_A Hypothetical protein; a 97.7 0.00017 5.9E-09 55.7 8.9 92 120-211 14-130 (159)
183 1wao_1 Serine/threonine protei 97.7 0.00015 5.1E-09 67.3 9.8 118 21-141 12-134 (477)
184 1ihg_A Cyclophilin 40; ppiase 97.6 0.0008 2.7E-08 60.2 13.1 119 16-137 224-361 (370)
185 3rkv_A Putative peptidylprolyl 97.6 0.0016 5.4E-08 50.4 12.6 119 46-183 11-131 (162)
186 2l6j_A TPR repeat-containing p 97.5 0.00016 5.6E-09 51.7 5.4 93 46-142 4-103 (111)
187 3q7a_A Farnesyltransferase alp 97.5 0.0041 1.4E-07 54.7 15.2 195 14-211 87-330 (349)
188 2l6j_A TPR repeat-containing p 97.4 0.00031 1E-08 50.2 6.5 86 117-202 4-97 (111)
189 2hr2_A Hypothetical protein; a 97.4 0.0015 5E-08 50.5 10.5 111 47-183 12-136 (159)
190 1na3_A Designed protein CTPR2; 97.4 0.00082 2.8E-08 46.0 8.5 79 117-195 9-89 (91)
191 3dra_A Protein farnesyltransfe 97.4 0.01 3.5E-07 51.3 16.6 183 26-211 44-249 (306)
192 2kat_A Uncharacterized protein 97.4 0.0012 4.1E-08 47.7 9.1 76 136-211 4-81 (115)
193 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.9E-08 46.7 8.4 65 148-212 6-70 (100)
194 3n71_A Histone lysine methyltr 97.3 0.00091 3.1E-08 62.0 9.6 120 58-177 321-463 (490)
195 1wy6_A Hypothetical protein ST 97.2 0.019 6.4E-07 42.5 13.8 140 57-215 18-157 (172)
196 1dce_A Protein (RAB geranylger 97.2 0.03 1E-06 53.0 19.4 172 27-201 40-244 (567)
197 3dss_A Geranylgeranyl transfer 97.2 0.023 8E-07 49.5 17.2 196 15-213 26-268 (331)
198 3dss_A Geranylgeranyl transfer 97.2 0.058 2E-06 47.1 19.1 180 31-213 90-305 (331)
199 3ma5_A Tetratricopeptide repea 97.2 0.0021 7.2E-08 45.3 8.4 59 15-73 7-68 (100)
200 3q7a_A Farnesyltransferase alp 97.1 0.028 9.5E-07 49.4 16.7 178 19-199 58-258 (349)
201 2kat_A Uncharacterized protein 97.1 0.0047 1.6E-07 44.4 9.6 63 45-108 18-80 (115)
202 1na3_A Designed protein CTPR2; 97.0 0.0089 3E-07 40.5 10.3 61 47-108 10-70 (91)
203 1klx_A Cysteine rich protein B 96.9 0.0067 2.3E-07 45.6 9.3 110 60-178 9-126 (138)
204 2uy1_A Cleavage stimulation fa 96.9 0.03 1E-06 52.0 15.4 184 13-210 211-411 (493)
205 3mkq_A Coatomer beta'-subunit; 96.9 0.013 4.5E-07 57.6 13.7 154 24-209 608-762 (814)
206 3qww_A SET and MYND domain-con 96.8 0.0094 3.2E-07 54.3 11.2 84 94-177 311-410 (433)
207 3qwp_A SET and MYND domain-con 96.8 0.012 4E-07 53.6 11.8 99 88-186 294-413 (429)
208 2uy1_A Cleavage stimulation fa 96.8 0.023 8E-07 52.7 14.1 168 32-209 196-380 (493)
209 3qwp_A SET and MYND domain-con 96.8 0.0049 1.7E-07 56.2 9.0 116 124-257 294-427 (429)
210 1klx_A Cysteine rich protein B 96.6 0.026 8.9E-07 42.3 10.8 113 95-215 9-129 (138)
211 1zu2_A Mitochondrial import re 96.6 0.0016 5.6E-08 50.1 3.8 85 129-213 14-121 (158)
212 1dce_A Protein (RAB geranylger 96.5 0.089 3E-06 49.7 16.0 148 60-211 43-220 (567)
213 1zu2_A Mitochondrial import re 96.5 0.0022 7.6E-08 49.4 4.0 73 134-213 63-148 (158)
214 3ly7_A Transcriptional activat 96.5 0.069 2.4E-06 47.0 13.7 138 44-183 192-344 (372)
215 3bee_A Putative YFRE protein; 96.4 0.022 7.4E-07 39.6 8.3 67 148-214 5-74 (93)
216 3qww_A SET and MYND domain-con 96.3 0.0069 2.4E-07 55.2 7.0 82 130-211 311-410 (433)
217 2kc7_A BFR218_protein; tetratr 96.1 0.019 6.5E-07 39.7 7.2 62 124-185 7-71 (99)
218 3mkq_B Coatomer subunit alpha; 96.1 0.34 1.2E-05 37.8 15.3 129 23-175 13-141 (177)
219 2kc7_A BFR218_protein; tetratr 96.0 0.025 8.5E-07 39.1 7.4 59 155-213 6-65 (99)
220 3mkq_A Coatomer beta'-subunit; 95.4 0.52 1.8E-05 46.1 16.6 131 18-175 632-762 (814)
221 2v5f_A Prolyl 4-hydroxylase su 95.4 0.1 3.6E-06 36.7 8.5 70 116-185 4-82 (104)
222 3bee_A Putative YFRE protein; 95.3 0.1 3.6E-06 36.0 8.0 67 115-181 4-75 (93)
223 3ly7_A Transcriptional activat 95.1 0.35 1.2E-05 42.6 12.4 142 9-153 188-347 (372)
224 1pc2_A Mitochondria fission pr 94.7 0.3 1E-05 37.1 9.6 66 147-212 30-100 (152)
225 1pc2_A Mitochondria fission pr 94.3 0.45 1.5E-05 36.1 9.8 30 154-183 76-105 (152)
226 2v5f_A Prolyl 4-hydroxylase su 93.5 0.4 1.4E-05 33.5 8.0 61 48-108 7-73 (104)
227 4gns_B Protein CSD3, chitin bi 92.7 1.4 4.7E-05 42.9 12.6 123 85-210 252-398 (754)
228 3u64_A Protein TP_0956; tetrat 92.5 0.44 1.5E-05 40.4 7.9 83 133-215 179-272 (301)
229 1v54_E Cytochrome C oxidase po 92.2 0.96 3.3E-05 31.4 7.7 63 61-125 25-87 (109)
230 2ff4_A Probable regulatory pro 91.6 0.47 1.6E-05 42.4 7.5 68 153-220 175-247 (388)
231 3u64_A Protein TP_0956; tetrat 91.6 0.75 2.6E-05 39.0 8.1 105 97-210 179-296 (301)
232 2ff4_A Probable regulatory pro 91.1 1.4 4.8E-05 39.3 10.1 65 85-151 175-247 (388)
233 3mkq_B Coatomer subunit alpha; 90.8 4.7 0.00016 31.3 14.1 100 91-208 15-114 (177)
234 1nzn_A CGI-135 protein, fissio 89.9 1.7 5.9E-05 31.7 7.8 27 157-183 82-108 (126)
235 3lpz_A GET4 (YOR164C homolog); 89.7 9.3 0.00032 33.0 20.8 168 17-211 37-215 (336)
236 1nzn_A CGI-135 protein, fissio 89.0 3.8 0.00013 29.9 9.1 95 52-149 7-107 (126)
237 2y69_E Cytochrome C oxidase su 88.1 2.9 9.9E-05 30.8 7.7 62 62-125 69-130 (152)
238 4gns_B Protein CSD3, chitin bi 87.1 3.7 0.00012 39.9 10.3 124 18-144 251-398 (754)
239 2wpv_A GET4, UPF0363 protein Y 86.6 14 0.00049 31.5 20.6 143 54-211 61-216 (312)
240 3txn_A 26S proteasome regulato 86.2 18 0.0006 32.1 15.0 159 16-176 20-208 (394)
241 4h7y_A Dual specificity protei 85.2 4.4 0.00015 30.6 7.6 54 163-216 74-127 (161)
242 4b4t_P 26S proteasome regulato 85.2 21 0.00073 32.2 16.2 183 29-211 30-246 (445)
243 1v54_E Cytochrome C oxidase po 84.7 4.3 0.00015 28.2 6.8 47 144-190 40-86 (109)
244 4h7y_A Dual specificity protei 84.1 10 0.00035 28.6 9.2 54 131-185 74-130 (161)
245 1wy6_A Hypothetical protein ST 81.8 14 0.00047 27.5 14.6 144 18-180 8-156 (172)
246 3ffl_A Anaphase-promoting comp 80.5 12 0.00042 28.5 8.7 125 8-146 11-151 (167)
247 4fhn_B Nucleoporin NUP120; pro 78.4 19 0.00066 36.9 12.2 192 18-211 815-1049(1139)
248 3kea_A K1L; tropism, ANK repea 78.0 5.6 0.00019 33.3 7.0 187 19-219 32-224 (285)
249 2uwj_G Type III export protein 77.5 15 0.00052 25.4 8.0 48 26-75 50-97 (115)
250 4b4t_P 26S proteasome regulato 76.7 43 0.0015 30.2 14.8 152 60-211 30-205 (445)
251 2p58_C Putative type III secre 76.5 16 0.00056 25.3 8.5 45 57-107 51-95 (116)
252 3eu9_A Huntingtin-interacting 76.2 2.9 0.0001 33.5 4.6 197 3-212 25-236 (240)
253 2nsz_A Programmed cell death p 75.3 16 0.00055 26.6 7.9 64 17-80 9-77 (129)
254 1qsa_A Protein (soluble lytic 74.8 58 0.002 30.8 16.8 114 61-177 229-347 (618)
255 3txn_A 26S proteasome regulato 74.7 45 0.0015 29.5 15.2 162 47-209 20-207 (394)
256 2y69_E Cytochrome C oxidase su 74.7 13 0.00043 27.5 6.8 49 142-190 81-129 (152)
257 1zbp_A Hypothetical protein VP 73.9 22 0.00074 29.6 9.1 112 89-212 5-129 (273)
258 1zbp_A Hypothetical protein VP 72.7 12 0.00042 31.1 7.3 55 158-212 6-60 (273)
259 4fhn_B Nucleoporin NUP120; pro 71.6 70 0.0024 32.8 14.3 120 13-135 840-989 (1139)
260 3ffl_A Anaphase-promoting comp 70.8 33 0.0011 26.2 9.3 79 17-108 65-149 (167)
261 3lvg_A Clathrin heavy chain 1; 70.6 0.019 6.4E-07 52.2 -10.6 145 15-171 54-221 (624)
262 2ion_A PDCD4, programmed cell 68.6 15 0.00051 27.6 6.5 64 17-80 11-79 (152)
263 2zu6_B Programmed cell death p 68.3 55 0.0019 27.8 13.3 196 18-215 6-234 (307)
264 4b4t_R RPN7, 26S proteasome re 64.8 57 0.002 29.1 10.8 96 48-143 133-234 (429)
265 4b4t_R RPN7, 26S proteasome re 64.6 28 0.00097 31.2 8.7 95 17-111 133-238 (429)
266 3esl_A Checkpoint serine/threo 60.4 61 0.0021 25.6 12.5 85 151-261 82-168 (202)
267 1wdy_A 2-5A-dependent ribonucl 58.2 39 0.0013 27.3 8.1 187 18-217 5-213 (285)
268 2nsz_A Programmed cell death p 57.3 51 0.0017 23.8 7.5 23 121-143 11-33 (129)
269 2l0z_A Glycoprotein G2; zinc-b 57.1 3.5 0.00012 22.9 0.8 11 341-351 19-29 (42)
270 3ljn_A Hypothetical protein; a 55.6 44 0.0015 28.6 8.2 80 127-208 180-266 (364)
271 1wdy_A 2-5A-dependent ribonucl 55.5 39 0.0013 27.3 7.6 193 2-207 20-240 (285)
272 3ygs_P Procaspase 9; apoptosis 53.9 20 0.00069 24.5 4.5 38 29-66 51-88 (97)
273 3aji_A 26S proteasome non-ATPa 53.1 55 0.0019 25.6 7.9 178 21-217 9-199 (231)
274 1y8m_A FIS1; mitochondria, unk 53.0 67 0.0023 23.8 13.2 45 167-211 60-105 (144)
275 2wvi_A Mitotic checkpoint seri 51.1 58 0.002 24.7 7.1 49 168-216 79-129 (164)
276 3o48_A Mitochondria fission 1 50.4 71 0.0024 23.3 9.9 51 97-148 59-110 (134)
277 2ion_A PDCD4, programmed cell 50.3 72 0.0025 23.8 7.5 25 120-144 12-36 (152)
278 2p1h_A APAF-1, apoptotic prote 50.2 54 0.0019 21.9 7.0 38 28-65 49-86 (94)
279 3b7b_A Euchromatic histone-lys 48.5 16 0.00055 29.0 4.0 17 23-39 16-32 (237)
280 4a1g_A Mitotic checkpoint seri 48.5 83 0.0028 23.5 8.9 50 167-216 83-134 (152)
281 1k1a_A B-cell lymphoma 3-encod 48.5 56 0.0019 25.7 7.3 85 54-143 14-102 (241)
282 2pk8_A Uncharacterized protein 48.4 15 0.00051 24.8 2.9 30 239-268 12-41 (103)
283 2xig_A Ferric uptake regulatio 45.6 76 0.0026 23.5 7.0 62 71-134 17-78 (150)
284 4aez_C MAD3, mitotic spindle c 45.5 93 0.0032 25.0 7.7 51 166-216 131-183 (223)
285 2fe3_A Peroxide operon regulat 44.3 55 0.0019 24.1 6.0 64 70-135 11-74 (145)
286 3ljn_A Hypothetical protein; a 43.5 58 0.002 27.8 7.0 186 18-217 20-238 (364)
287 3cqc_A Nuclear pore complex pr 42.8 71 0.0024 26.5 7.0 63 185-264 202-264 (270)
288 3eiq_C Programmed cell death p 42.4 78 0.0027 27.6 7.4 80 19-98 221-305 (358)
289 2f8y_A Notch homolog 1, transl 42.0 28 0.00097 27.2 4.4 197 4-218 8-219 (223)
290 1y8m_A FIS1; mitochondria, unk 41.4 1.1E+02 0.0036 22.7 11.0 32 154-185 82-113 (144)
291 1k1a_A B-cell lymphoma 3-encod 41.2 1.1E+02 0.0039 23.8 8.1 185 20-217 11-210 (241)
292 2zu6_B Programmed cell death p 41.0 76 0.0026 26.9 7.0 61 18-78 169-234 (307)
293 3kea_A K1L; tropism, ANK repea 40.7 24 0.00083 29.3 3.9 160 2-171 46-214 (285)
294 3ltj_A Alpharep-4; protein eng 40.5 1.2E+02 0.0041 23.1 17.3 143 12-164 25-167 (201)
295 3hra_A Ankyrin repeat family p 39.0 1E+02 0.0035 23.3 7.3 14 203-216 158-171 (201)
296 1bd8_A P19INK4D CDK4/6 inhibit 38.4 42 0.0014 24.3 4.7 16 25-40 9-24 (156)
297 4ets_A Ferric uptake regulatio 38.3 61 0.0021 24.5 5.5 72 62-134 13-86 (162)
298 3ltm_A Alpha-REP4; protein eng 37.7 1.4E+02 0.0047 22.9 16.8 120 35-164 22-141 (211)
299 2yru_A Steroid receptor RNA ac 37.3 60 0.0021 23.1 4.9 43 67-109 47-89 (118)
300 4ady_A RPN2, 26S proteasome re 36.4 3E+02 0.01 27.5 11.2 150 58-210 502-656 (963)
301 2d2s_A Exocyst complex compone 35.8 1.7E+02 0.0059 23.6 8.9 25 186-210 94-118 (235)
302 3qye_A TBC1 domain family memb 35.6 2E+02 0.0069 24.3 10.2 78 61-143 164-249 (331)
303 4b4t_S RPN3, 26S proteasome re 35.4 2.7E+02 0.0091 25.6 13.8 60 15-74 231-298 (523)
304 2k0q_A Putative uncharacterize 35.1 13 0.00044 23.6 0.9 22 328-349 8-29 (74)
305 3r88_A Anthranilate phosphorib 34.8 99 0.0034 27.1 6.9 68 148-215 22-91 (377)
306 2o03_A Probable zinc uptake re 34.6 61 0.0021 23.3 4.8 47 51-97 15-61 (131)
307 2uwj_G Type III export protein 34.3 1.1E+02 0.0039 21.1 6.5 45 128-175 50-94 (115)
308 2p58_C Putative type III secre 33.2 1.2E+02 0.0041 21.0 7.6 27 128-155 51-77 (116)
309 3l6a_A Eukaryotic translation 32.4 1.8E+02 0.0063 25.2 8.3 62 17-79 14-81 (364)
310 3lvg_A Clathrin heavy chain 1; 32.4 1.1 3.8E-05 40.9 -5.9 80 118-201 55-134 (624)
311 3us6_A Histidine-containing ph 32.4 1.5E+02 0.0053 21.9 9.7 24 188-211 98-121 (153)
312 1bd8_A P19INK4D CDK4/6 inhibit 32.3 67 0.0023 23.2 4.9 141 52-207 5-154 (156)
313 2d2s_A Exocyst complex compone 31.7 2E+02 0.0069 23.1 12.9 88 52-143 24-117 (235)
314 3eu9_A Huntingtin-interacting 31.5 1.5E+02 0.005 22.9 7.2 180 22-217 13-204 (240)
315 1mzb_A Ferric uptake regulatio 30.3 1.1E+02 0.0037 22.1 5.6 61 72-134 9-70 (136)
316 2fe3_A Peroxide operon regulat 29.8 1.6E+02 0.0055 21.4 6.7 56 110-166 15-73 (145)
317 3jxi_A Vanilloid receptor-rela 29.5 1.5E+02 0.005 23.6 7.0 119 53-173 9-161 (260)
318 3eyy_A Putative iron uptake re 29.4 83 0.0029 23.1 4.9 61 71-134 9-69 (145)
319 3mwm_A ZUR, putative metal upt 29.3 52 0.0018 24.0 3.7 46 87-133 19-64 (139)
320 1ug3_A EIF4GI, eukaryotic prot 29.0 2.7E+02 0.0093 23.7 10.3 62 17-78 13-78 (339)
321 2etb_A Transient receptor pote 28.5 1.3E+02 0.0045 23.8 6.5 119 52-173 5-157 (256)
322 1mzb_A Ferric uptake regulatio 27.9 1.5E+02 0.0053 21.2 6.1 55 110-165 11-69 (136)
323 2dod_A Transcription elongatio 27.8 91 0.0031 20.5 4.2 27 97-124 16-42 (82)
324 4b4t_S RPN3, 26S proteasome re 27.8 1.6E+02 0.0055 27.1 7.2 64 117-180 231-301 (523)
325 3f3f_C Nucleoporin NUP85; stru 27.6 1.1E+02 0.0037 28.5 6.1 21 20-40 247-267 (570)
326 4a1g_A Mitotic checkpoint seri 27.6 1.5E+02 0.005 22.2 5.8 54 63-117 82-136 (152)
327 3ltm_A Alpha-REP4; protein eng 27.3 2.1E+02 0.0071 21.8 16.6 144 12-165 30-173 (211)
328 3lpz_A GET4 (YOR164C homolog); 26.8 3E+02 0.01 23.6 15.5 142 25-197 22-182 (336)
329 1n11_A Ankyrin; clathrin, BAND 26.7 96 0.0033 27.2 5.7 38 3-40 30-69 (437)
330 4gq2_M Nucleoporin NUP120; bet 26.3 5E+02 0.017 25.9 13.8 51 87-143 816-866 (950)
331 2w57_A Ferric uptake regulatio 26.0 1.8E+02 0.0062 21.3 6.3 36 72-108 8-44 (150)
332 2xig_A Ferric uptake regulatio 25.8 2E+02 0.0068 21.1 6.8 56 110-166 20-78 (150)
333 3e3v_A Regulatory protein RECX 25.6 2.2E+02 0.0076 21.6 7.5 23 121-143 140-163 (177)
334 3esl_A Checkpoint serine/threo 24.7 2.6E+02 0.0087 22.0 10.4 55 60-115 93-148 (202)
335 2b7e_A PRE-mRNA processing pro 24.7 33 0.0011 21.1 1.4 29 63-91 3-31 (59)
336 2qq8_A TBC1 domain family memb 24.6 1.1E+02 0.0038 26.1 5.5 78 61-143 169-254 (334)
337 1s6c_A KV4 potassium channel-i 23.8 2.2E+02 0.0075 21.0 12.0 39 134-172 140-179 (183)
338 1bpo_A Protein (clathrin); cla 23.2 4.2E+02 0.014 24.0 12.2 70 7-76 353-425 (494)
339 2wpv_A GET4, UPF0363 protein Y 23.2 3.4E+02 0.012 22.9 15.6 139 47-204 34-189 (312)
340 3i5p_A Nucleoporin NUP170; hel 22.4 4.6E+02 0.016 24.1 10.2 67 148-214 177-248 (525)
341 2aja_A Ankyrin repeat family p 22.1 3.8E+02 0.013 23.1 10.0 44 128-172 171-219 (376)
342 1oxz_A ADP-ribosylation factor 21.8 2.7E+02 0.0093 21.5 6.6 57 50-110 35-94 (186)
343 3aji_A 26S proteasome non-ATPa 21.8 2.1E+02 0.0073 22.0 6.4 152 52-217 9-166 (231)
344 2w57_A Ferric uptake regulatio 21.7 1.2E+02 0.0041 22.3 4.5 52 46-97 16-68 (150)
345 3hra_A Ankyrin repeat family p 21.5 2.6E+02 0.0087 20.8 8.3 131 22-164 9-152 (201)
346 3ltj_A Alpharep-4; protein eng 21.5 2.6E+02 0.009 21.0 16.4 165 32-210 14-178 (201)
347 2ko4_A Mediator of RNA polymer 21.4 1.2E+02 0.0041 19.7 3.6 37 138-174 24-61 (81)
348 3o48_A Mitochondria fission 1 21.2 2.4E+02 0.0083 20.5 10.7 83 31-118 23-112 (134)
349 1uzc_A Hypothetical protein FL 21.1 1.2E+02 0.0041 19.3 3.7 20 97-116 14-33 (71)
350 2fu4_A Ferric uptake regulatio 21.0 1.7E+02 0.0058 18.6 6.3 60 71-132 7-67 (83)
351 1oai_A Nuclear RNA export fact 20.7 76 0.0026 19.3 2.6 13 61-73 35-47 (59)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.7e-32 Score=253.95 Aligned_cols=209 Identities=18% Similarity=0.221 Sum_probs=176.1
Q ss_pred HhHHHHhCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHHcCC---------HHHHHHH
Q 048117 3 HEYSNQSGFRRNI-RVCNTLIDMYVKCGCLEGARRVFIEMEE----RTVFTWSAMIQGLAIHGQ---------AKEALTS 68 (352)
Q Consensus 3 ~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~---------~~~A~~l 68 (352)
...+.+.++.+.+ .+++.+|++|+|.|++++|.++|++|.+ ||+++||+||.+|++.+. .++|.++
T Consensus 13 ~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~l 92 (501)
T 4g26_A 13 SRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92 (501)
T ss_dssp -----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHH
Confidence 3456667766544 5689999999999999999999999984 799999999999997765 6889999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CC
Q 048117 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PI 145 (352)
Q Consensus 69 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~ 145 (352)
|++|.+.|+.||.+||++||.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++| ++
T Consensus 93 f~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999995 599999999999999999999999999999999 89
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHccC------HHHHHHHHHHHHhc
Q 048117 146 KPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ-LDPLNNGYHVVLSNIYAEAER------WEDVARVRKLMRNL 212 (352)
Q Consensus 146 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~m~~~ 212 (352)
.||..||++||.+|++.|+.++|.+++++|.+ ...++..++..++..|...+. ..++..+...+...
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~ 245 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSG 245 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhhHhcc
Confidence 99999999999999999999999999999997 333456789999999876432 12344555555543
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.3e-31 Score=247.43 Aligned_cols=192 Identities=14% Similarity=0.168 Sum_probs=166.4
Q ss_pred HHHHHHHHhcccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC---------H
Q 048117 32 EGARRVFIEMEER-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW---------V 97 (352)
Q Consensus 32 ~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------~ 97 (352)
..++.+++.++++ ....++.+|++|++.|++++|+++|++|.+.|++||.+||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456666677654 2356899999999999999999999999999999999999999999997765 7
Q ss_pred HHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048117 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174 (352)
Q Consensus 98 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (352)
+.|.++|++|... |+.||..|||+||++|++.|++++|.++|++| ++.||..||+++|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 8999999999964 99999999999999999999999999999999 8899999999999999999999999999999
Q ss_pred HHhc-CCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEE
Q 048117 175 LDQL-DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT 224 (352)
Q Consensus 175 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 224 (352)
|.+. ..++..+|++|+++|++.|++++|.++|++|++.|..|+..|+.++
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 9873 3356789999999999999999999999999999999998876554
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.4e-23 Score=201.37 Aligned_cols=304 Identities=10% Similarity=-0.061 Sum_probs=229.0
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
.++..+|+.++.+|.+.|++++|.++|+.+.+ +|..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..+++.++.
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 347 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLA 347 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHH
Confidence 33445567778889999999999999999987 799999999999999999999999999998764 346778999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHH
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDL 167 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 167 (352)
++.+.|+.++|.++++.+.. ..+.+..+++.++.+|.+.|++++|.++|+++ ...| +..+|+.++.+|.+.|++++
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999984 33556889999999999999999999999988 3334 56799999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhHHHHHH
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
|.++|+++.+..|.+..++..+..+|.+.|++++|.++|+++.+.... ++..+.. + ...+...|..+++.+
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~----l----~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNE----L----GVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHH----H----HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHH----H----HHHHHHhCCHHHHHH
Confidence 999999999988988889999999999999999999999999875432 1211111 1 112224566777777
Q ss_pred HHHHHHHHHHHcCcccCC--cccccccchhHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccccccchhhHHHhhH
Q 048117 248 MWEKLLDGMKLKGYIPNT--SVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEI 325 (352)
Q Consensus 248 ~~~~l~~~m~~~g~~p~~--~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~g~~~~a~~~~~~~ 325 (352)
.+++.++...+.|..|+. .++......+.+.+......+.+..+....+..+..-..+...|...|+.++|.+++.++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555544444444778884 334433333334343333333333333333322222224556788899999999999887
Q ss_pred hc
Q 048117 326 VN 327 (352)
Q Consensus 326 ~~ 327 (352)
..
T Consensus 577 l~ 578 (597)
T 2xpi_A 577 LA 578 (597)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.1e-21 Score=188.30 Aligned_cols=297 Identities=11% Similarity=-0.010 Sum_probs=199.7
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-------------------TVFTWSAMIQGLAIHGQAKEALTSFNKM 72 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m 72 (352)
++++.+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|++++|+++|++|
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567777777777777777777777777743322 3677777777777777777777777777
Q ss_pred HHcCCCcc-HHH--------------------------------------HHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 048117 73 IEIGIKPN-GVT--------------------------------------FIGLLHACGHMGWVDEGRRFFYSMTTEYGI 113 (352)
Q Consensus 73 ~~~g~~p~-~~t--------------------------------------~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~ 113 (352)
.+.+ |+ ... |+.++..|.+.|++++|.++|+.+...
T Consensus 227 ~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--- 301 (597)
T 2xpi_A 227 LMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--- 301 (597)
T ss_dssp HHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---
T ss_pred HHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---
Confidence 6643 32 222 222245556677777777777777632
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048117 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIK-PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191 (352)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 191 (352)
+++..+++.++.+|.+.|++++|.++|+++ ... .+..+|+.++.+|.+.|+.++|..+++.+.+..|.+...+..+..
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 578889999999999999999999999988 222 367789999999999999999999999998888888888899999
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhHHHHHHHHHHHHHHHHHcCcccCCcccccc
Q 048117 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLD 271 (352)
Q Consensus 192 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~ 271 (352)
+|.+.|++++|.++|+++.+... +....+. .+ ...+...++.+++++ ++++|...+ .++..++...
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~---~l----~~~~~~~g~~~~A~~----~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDP--QFGPAWI---GF----AHSFAIEGEHDQAIS----AYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH---HH----HHHHHHHTCHHHHHH----HHHHHHHTT-TTCSHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC--CCHHHHH---HH----HHHHHHcCCHHHHHH----HHHHHHHhC-ccchHHHHHH
Confidence 99999999999999999987432 2111111 11 122233456666665 666666543 2233344333
Q ss_pred cchhHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccccccchhhHHHhhHhc
Q 048117 272 IEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVN 327 (352)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~g~~~~a~~~~~~~~~ 327 (352)
...+.+.+......+.+.......+..+..-..+...|...|+.++|.+++.++..
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333444333333333333333332222222455678899999999999998854
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=3.7e-22 Score=193.41 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=133.0
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcc-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEME-------ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 85 (352)
--..+||+||++|+++|++++|.++|++|. .||++|||+||++|++.|++++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345789999999999999999999998875 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC-HHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCcchHHHHHHHHH
Q 048117 86 GLLHACGHMGW-VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK----PNGVVWGALLGGCR 160 (352)
Q Consensus 86 ~ll~a~~~~g~-~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~li~~~~ 160 (352)
++|+++++.|+ .++|.++|++|..+ |+.||..+|+++++.+.+.+-++.+.++..++... |...+...|.+.|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 99999999998 47899999999965 99999999999999888887666665554444211 22445555666676
Q ss_pred hcC---------CHHHHHHHHHH
Q 048117 161 VHK---------NIDLAEEASRQ 174 (352)
Q Consensus 161 ~~g---------~~~~a~~~~~~ 174 (352)
+.+ ..++...+|++
T Consensus 284 ~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 284 KDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCSCCCCCCCSSCHHHHHHHHHH
T ss_pred cCCCCcCccccCCHHHHHHHHHH
Confidence 655 24555566554
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=2.9e-21 Score=187.22 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHH
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMI---EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 122 (352)
..|||+||++|++.|+.++|.++|.+|. ..|+.||.+|||+||++|++.|++++|.++|++|.. .|+.||..|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHH
Confidence 3699999999999999999999998876 468999999999999999999999999999999995 499999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHhC---CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC-----CcchHHHHHHH
Q 048117 123 MVDLLSRAGFL-QEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ-LDPL-----NNGYHVVLSNI 192 (352)
Q Consensus 123 li~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~-----~~~~~~~l~~~ 192 (352)
||+++++.|+. ++|.++|++| |+.||.++|+.++.++.+.+- .+..+++.. ..|+ ...+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v----L~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV----LKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH----HHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH----HHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 7899999999 999999999999977665432 223333321 2221 12344567788
Q ss_pred HHHcc
Q 048117 193 YAEAE 197 (352)
Q Consensus 193 ~~~~g 197 (352)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 88766
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=2.3e-16 Score=143.10 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=141.9
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGL 87 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 87 (352)
+.+..+|..+...|.+.|++++|...|+.+.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 34566777777777777777777777776653 3 4556777777777777777777777777664 344 3345566
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCH
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 165 (352)
...+...|++++|.+.|+.+... .+.+..+|+.+...|.+.|++++|...|+++ ...| +...|..+...+...|++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 66777777888888777777742 1223567777777788888888888877777 3334 345677777777777888
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 166 DLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
++|...+++..+..|.+..++..+...|.+.|++++|.+.|+++.+.+
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888877777777777777788888888888888888888887653
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.65 E-value=3.3e-15 Score=137.89 Aligned_cols=196 Identities=14% Similarity=0.068 Sum_probs=171.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
.+..++..+...|.+.|++++|..+|+.+.+ .+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4678899999999999999999999998874 478999999999999999999999999998763 345778999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-h---hhHHHHH------------HHHHhcCCHHHHHHHHHhC-CCCC-Ccch
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQ-I---EHYGCMV------------DLLSRAGFLQEAYEFIRNM-PIKP-NGVV 151 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~-~---~~~~~li------------~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 151 (352)
++.+.|++++|.+.|+.+.. ..|+ . ..+..+. ..|.+.|++++|...|+++ ...| +...
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999983 3454 3 5565554 4489999999999999998 3333 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
|..+...|.+.|++++|...++.+.+..|.+...+..+...|...|++++|...|+++.+.
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988888889999999999999999999999999864
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=6.7e-14 Score=126.83 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=127.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHA 90 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 90 (352)
..+|+.+...|.+.|++++|...|+++.+ | +...|..+...+...|++++|+..|++.... .| +..++..+..+
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHH
Confidence 34444455555555555555555554432 1 3344555555555555555555555555442 23 35667777777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIK-PNGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a 168 (352)
+.+.|++++|.+.++.+... -+.+..+|..+...|.+.|++++|.+.|+++ ... ++..+|+.+...+.+.|++++|
T Consensus 247 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 77788888888888777732 2234567777888888888888888888777 222 3566777888888888888888
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
...++++.+..|++...+..+...|.+.|++++|.+.|+++.+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888777777777777788888888888888888887775
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.60 E-value=9.7e-14 Score=124.61 Aligned_cols=198 Identities=10% Similarity=0.032 Sum_probs=146.0
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH--------
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG-------- 81 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------- 81 (352)
.+..++..+...|.+.|++++|...|+...+ .+..+|..+...|...|++++|+..|+++.+. .|+.
T Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 174 (365)
T 4eqf_A 97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK 174 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhc
Confidence 3566777777777777777777777776653 25667777777777777777777777777653 2332
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHH
Q 048117 82 ---VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALL 156 (352)
Q Consensus 82 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li 156 (352)
.++..+...+...|++++|.+.++.+.....-.++..++..+...|.+.|++++|.+.|++. ...| +..+|..+.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 254 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLG 254 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 12233466677777777777777777743222225788999999999999999999999887 3333 567899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
..|...|++++|...++++.+..|.+...+..+..+|.+.|++++|...|++..+.
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988988888889999999999999999999988764
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.3e-13 Score=114.99 Aligned_cols=195 Identities=12% Similarity=-0.001 Sum_probs=157.7
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
+++...+..+-..+.+.|++++|...|+...+ .+...|..+...+.+.|++++|+..|++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56788899999999999999999999998764 378899999999999999999999999998753 33566888899
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHH
Q 048117 89 HACGHM-----------GWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGAL 155 (352)
Q Consensus 89 ~a~~~~-----------g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 155 (352)
.++... |++++|...++...+. .| +...+..+...|...|++++|...|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 999999 9999999999998843 34 4678899999999999999999999987 212577889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 156 LGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
...+...|+.++|...++...+..|.+...+..+...+...|++++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999899999999999999999999887654
No 12
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=5.7e-13 Score=110.50 Aligned_cols=199 Identities=9% Similarity=-0.022 Sum_probs=172.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
.+..++..+...|.+.|++++|.+.|+...+ .+...|..+...+...|++++|...|++..+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3567889999999999999999999998764 367899999999999999999999999998753 346778889999
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCH
Q 048117 90 ACGHM-GWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 90 a~~~~-g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 165 (352)
.+... |++++|...++.+.. .+..|+ ...+..+...|.+.|++++|...|+++ ...| +...|..+...+...|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999985 334444 678889999999999999999999987 3334 467888999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 166 DLAEEASRQLDQLDP-LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 166 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
++|...++.+.+..| .+...+..+...+...|+.+.|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999888 777788888888999999999999999987643
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.58 E-value=3e-13 Score=124.72 Aligned_cols=206 Identities=12% Similarity=0.031 Sum_probs=173.8
Q ss_pred HhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 048117 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79 (352)
Q Consensus 3 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 79 (352)
+..+.+. .+.+..++..+...|.+.|++++|...|+.+.+ .+..+|..+...|.+.|++++|...|+++.+. .|
T Consensus 49 ~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 125 (450)
T 2y4t_A 49 FHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NP 125 (450)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CC
T ss_pred HHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 3444443 245788999999999999999999999998875 36889999999999999999999999999874 45
Q ss_pred cH----HHHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 80 NG----VTFIGL------------LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 80 ~~----~t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
+. ..+..+ ...+...|++++|...++.+... .+.+..++..+..+|.+.|++++|.+.|+++
T Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 43 455555 34488999999999999999853 3446788999999999999999999999998
Q ss_pred -CCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH------------HHHHHHccCHHHHHHHHHHH
Q 048117 144 -PIK-PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL------------SNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 144 -~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~m 209 (352)
... .+..+|..+...|...|+.++|...++.+.+..|.+...+..+ ...|.+.|++++|...|+++
T Consensus 204 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222 3678899999999999999999999999999989887766655 88899999999999999999
Q ss_pred HhcC
Q 048117 210 RNLG 213 (352)
Q Consensus 210 ~~~g 213 (352)
.+..
T Consensus 284 l~~~ 287 (450)
T 2y4t_A 284 MKTE 287 (450)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8743
No 14
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=4.6e-13 Score=113.55 Aligned_cols=197 Identities=11% Similarity=-0.026 Sum_probs=172.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
..++..+...|...|++++|...|+.+.+ .+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57788899999999999999999998764 367899999999999999999999999998753 34677888999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 168 (352)
...|++++|.+.++.+.. .+..| +...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|+.++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999885 33455 4678888999999999999999999987 3334 567888999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
...++.+.+..|.+...+..+...|.+.|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999888888888899999999999999999999998754
No 15
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.56 E-value=3.3e-13 Score=117.67 Aligned_cols=193 Identities=9% Similarity=0.019 Sum_probs=132.2
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE----R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 86 (352)
.|+..++..+...|.+.|+.++|.+.++++.. | +...+..+...+.+.|++++|++.|++ +.+...+..
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~ 135 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAM 135 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHH
Confidence 44566677777777777777777777776531 3 455666666777777888888777776 456667777
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHh
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH---YGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRV 161 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~ 161 (352)
+...+.+.|+.++|.+.++.+.+. .|+... ..+++..+...|++++|..+|+++ ....+...|+.+..++.+
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 777777788888888887777743 244321 122334444557788888877777 212356667777777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHH-HHHHHHHHHhcC
Q 048117 162 HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWED-VARVRKLMRNLG 213 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g 213 (352)
.|++++|...++++.+..|.++.++..++..+...|+.++ +.++++++.+..
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 8888888888888777777777777777777777777765 467777766543
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.53 E-value=4.5e-13 Score=116.88 Aligned_cols=190 Identities=10% Similarity=-0.023 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhccC
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHACGHMG 95 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 95 (352)
..-.+..+|...|+++.|...++....++..++..+...+...|+.++|++.++++...+..|+ ...+..+..++.+.|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 4456788999999999999988876666788999999999999999999999999998876665 445666678999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHH---HHHHHHHhcCCHHHHHHH
Q 048117 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWG---ALLGGCRVHKNIDLAEEA 171 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~---~li~~~~~~g~~~~a~~~ 171 (352)
++++|.+.++. +.+...+..++..|.+.|++++|.+.|+++ ...|+....+ ..+..+...|+.++|..+
T Consensus 116 ~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 116 NPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp CHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 99999998875 467889999999999999999999999998 4456643221 223344456899999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 172 SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
|+++.+..|+++..++.+..+|.+.|++++|...|++..+..
T Consensus 189 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999998899999999999999999999999987754
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.53 E-value=8.8e-13 Score=118.17 Aligned_cols=195 Identities=12% Similarity=0.054 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 93 (352)
.+..+...|.+.|++++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344455555555555555555554442 134455555555555555555555555554432 2234445555555555
Q ss_pred cCCHHHHHHHHH-------------------------------------------------HhHHhcCCCCChhhHHHHH
Q 048117 94 MGWVDEGRRFFY-------------------------------------------------SMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 94 ~g~~~~a~~~~~-------------------------------------------------~m~~~~g~~~~~~~~~~li 124 (352)
.|++++|...++ .+.....-.++..++..+.
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 555555555444 4442211111467788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHH
Q 048117 125 DLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (352)
..|.+.|++++|...|++. ...| +..+|..+...+...|++++|...++++.+..|.+...+..+..+|.+.|++++|
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888887 3334 4567888888888888888888888888888888777888888888888899988
Q ss_pred HHHHHHHHhc
Q 048117 203 ARVRKLMRNL 212 (352)
Q Consensus 203 ~~~~~~m~~~ 212 (352)
...|++..+.
T Consensus 305 ~~~~~~al~~ 314 (368)
T 1fch_A 305 VEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887653
No 18
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=3.6e-13 Score=113.32 Aligned_cols=198 Identities=12% Similarity=0.066 Sum_probs=155.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
.....+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4567788888899999999999999998864 367899999999999999999999999998753 346778889999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHH
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDL 167 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 167 (352)
.+...|++++|.+.++...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999853 2446778999999999999999999999987 3233 56788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
|...++.+.+..|.+...+..+...|.+.|++++|.+.+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999889888888999999999999999999999988754
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.9e-12 Score=113.94 Aligned_cols=197 Identities=16% Similarity=0.070 Sum_probs=157.0
Q ss_pred CCHhHHHHHHHHHHHcC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCG-CLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
.+..++..+...|...| ++++|...|+...+ .+...|..+...+...|++++|+..|++..+.. +.+..++..+.
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 166 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIG 166 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHH
Confidence 35677888888888888 88888888887664 256788888888888899999999988887653 23455666688
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCcchHHHHHH
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI----------KPNGVVWGALLG 157 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~li~ 157 (352)
..+...|++++|.+.++.... -.+.+..++..+...|.+.|++++|...+++. .. ..+..+|..+..
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 888888999999998888873 23445678888888899999999998888776 10 223567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 158 GCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.+...|+.++|...++...+..|.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 8999999999999999988888888888888888999999999999988876543
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.6e-13 Score=127.07 Aligned_cols=308 Identities=11% Similarity=-0.034 Sum_probs=208.8
Q ss_pred HhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Q 048117 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK- 78 (352)
Q Consensus 3 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~- 78 (352)
+..+.+.. ||..++..+..+|.+.|++++|...|+.+.+ | +..+|..+..++.+.|++++|+..|+++...+-.
T Consensus 29 ~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 106 (514)
T 2gw1_A 29 YNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN 106 (514)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 44555554 7999999999999999999999999998764 3 6789999999999999999999999998765410
Q ss_pred ----------------------------------------------------------------------------c-cH
Q 048117 79 ----------------------------------------------------------------------------P-NG 81 (352)
Q Consensus 79 ----------------------------------------------------------------------------p-~~ 81 (352)
| +.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (514)
T 2gw1_A 107 DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA 186 (514)
T ss_dssp GGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHH
Confidence 1 12
Q ss_pred HHHHHHHHHHh---ccCCHHHHHHHHHHhHHh----cC-C-------CCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 048117 82 VTFIGLLHACG---HMGWVDEGRRFFYSMTTE----YG-I-------IPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI 145 (352)
Q Consensus 82 ~t~~~ll~a~~---~~g~~~~a~~~~~~m~~~----~g-~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 145 (352)
..+......+. +.|++++|..+++.+... .. . +.+..++..+...|.+.|++++|...|+++ ..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 22222333333 489999999999998851 11 1 223567888999999999999999999988 33
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEE
Q 048117 146 KPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV 225 (352)
Q Consensus 146 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~ 225 (352)
.|+...|..+...+...|++++|...++.+.+..|.+...+..+...|...|++++|...|++..+.... ....+.
T Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~-- 342 (514)
T 2gw1_A 267 FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE--NIFPYI-- 342 (514)
T ss_dssp CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS--CSHHHH--
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh--hHHHHH--
Confidence 4557778889999999999999999999999988988888999999999999999999999998875432 111110
Q ss_pred CCEEEEEEeCCCCchhHHHHHHHHHHHHHHHHHcCcccCCcccccccch-hHHhhhhhhhhHHHHHHHHhcCCCCC----
Q 048117 226 DGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEE-KEKEKFLYRHSEKLALTFGLMNTPPG---- 300 (352)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~---- 300 (352)
.+...+...+..+++...+++ .... .|+.......+.. ....+........+..+....+..+.
T Consensus 343 -----~l~~~~~~~~~~~~A~~~~~~----~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 411 (514)
T 2gw1_A 343 -----QLACLAYRENKFDDCETLFSE----AKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411 (514)
T ss_dssp -----HHHHHTTTTTCHHHHHHHHHH----HHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSC
T ss_pred -----HHHHHHHHcCCHHHHHHHHHH----HHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHH
Confidence 011223345667777764444 3332 3443332221111 11111111111222222233222221
Q ss_pred --CcEEEEecccc---ccccchhhHHHhhHhc
Q 048117 301 --TPIRIMKNLRV---CEDCHAAFKLISEIVN 327 (352)
Q Consensus 301 --~~~~i~~~~~~---~g~~~~a~~~~~~~~~ 327 (352)
....+...+.. .|+.++|.+.+.+...
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 11123345666 8889999888887654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.52 E-value=4.8e-13 Score=120.06 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=162.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
+...+..+...|.+.|++++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345588899999999999999999998874 378899999999999999999999999998753 3457889999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CcchHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQ-----------IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP---NGVVWGAL 155 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~l 155 (352)
+...|++++|...++.+.+. .|+ ...+..+...|.+.|++++|.+.|+++ ...| +..+|..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999998843 222 223345588899999999999999998 3333 57789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 156 LGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
...+...|++++|...++++.+..|.+...+..+..+|.+.|++++|...|++..+..
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988999999999999999999999999988753
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.51 E-value=2.3e-12 Score=113.29 Aligned_cols=200 Identities=13% Similarity=0.020 Sum_probs=171.2
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 048117 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86 (352)
Q Consensus 10 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 86 (352)
+++.+..++..+...+...|++++|.++|+.+.+. +...+..++..+...|++++|..+|+++.+.. +.+...+..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 34567778889999999999999999999998743 55677788899999999999999999998752 345678888
Q ss_pred HHHHHhccC-CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 048117 87 LLHACGHMG-WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHK 163 (352)
Q Consensus 87 ll~a~~~~g-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 163 (352)
+...+...| ++++|.+.++.... -.+.+...|..+...|...|++++|.+.|++. ...| +...|..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHT--TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 999999999 99999999999883 22334778999999999999999999999998 3333 4677888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 164 NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
++++|...++...+..|.+...+..+...|...|++++|...+++..+.
T Consensus 174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999998889999999999999999999999988764
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.1e-12 Score=107.03 Aligned_cols=197 Identities=11% Similarity=0.064 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcc----HHHHHHH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG--IKPN----GVTFIGL 87 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~l 87 (352)
..+..+-..|.+.|++++|...|+...+ .+...|..+...+...|++++|+..|++..+.. ..|+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4566666667777777777777765432 456666677777777777777777777765421 1111 3566666
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhc-----------------------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEY-----------------------GIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~-----------------------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
...+...|++++|...++...... ...| +...+..+...|.+.|++++|...|++.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 667777777777777766666311 0233 3567888999999999999999999988
Q ss_pred -CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 144 -PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 144 -~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
...| +...|..+...+...|++++|...++...+..|.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 166 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3233 56789999999999999999999999999989988888899999999999999999999988764
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.48 E-value=3.1e-12 Score=112.31 Aligned_cols=196 Identities=11% Similarity=-0.014 Sum_probs=139.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH-HHHHH--
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV-TFIGL-- 87 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l-- 87 (352)
+..++..+...|.+.|++++|...|+.+.+ .+..+|..+...+...|++++|+..|++..+. .|+.. .+..+
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhH
Confidence 555666666666777777777777666543 24566666666777777777777777766653 22222 11111
Q ss_pred ------------HH-HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchH
Q 048117 88 ------------LH-ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVW 152 (352)
Q Consensus 88 ------------l~-a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 152 (352)
.. .+...|++++|.+.++.+... .+.+..++..+...|.+.|++++|.+.+++. ...| +..+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 11 255666777777777766632 2335678888889999999999999999887 3233 46678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 153 GALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..+...+...|++++|...++++.+..|.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888999999999999999999988888888888888899999999999999998887643
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.46 E-value=6e-12 Score=112.69 Aligned_cols=186 Identities=9% Similarity=-0.069 Sum_probs=143.7
Q ss_pred HHHHcCCHHHHHH-HHHhccc---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccC
Q 048117 24 MYVKCGCLEGARR-VFIEMEE---R----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG 95 (352)
Q Consensus 24 ~~~~~g~~~~A~~-~f~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 95 (352)
.|.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4455689999998 8885542 1 45678899999999999999999999999863 446778999999999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-----------------------------
Q 048117 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI----------------------------- 145 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------------------------- 145 (352)
++++|...++..... . +.+..++..+...|.+.|++++|.+.|+++ ..
T Consensus 113 ~~~~A~~~~~~al~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLEL-K-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999999853 2 446788999999999999999999988875 11
Q ss_pred --------------------CC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHH
Q 048117 146 --------------------KP---NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202 (352)
Q Consensus 146 --------------------~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (352)
.| +..+|..+...+...|++++|...++++.+..|.+...+..+...|...|++++|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 12 3556777888888888999999988888888888777888888888889999999
Q ss_pred HHHHHHHHhc
Q 048117 203 ARVRKLMRNL 212 (352)
Q Consensus 203 ~~~~~~m~~~ 212 (352)
...|++..+.
T Consensus 271 ~~~~~~al~~ 280 (368)
T 1fch_A 271 VAAYRRALEL 280 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9888888764
No 26
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.46 E-value=1.5e-11 Score=109.16 Aligned_cols=196 Identities=14% Similarity=0.051 Sum_probs=169.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
|+..+..+...+.+.|++++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.+.. +-+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 466788889999999999999999998764 367899999999999999999999999998752 3366788999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC----ChhhHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCC-CcchH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIP----QIEHYGCM------------VDLLSRAGFLQEAYEFIRNM-PIKP-NGVVW 152 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 152 (352)
+...|++++|...++... ...| +...+..+ ...+...|++++|.+.++++ ...| +...|
T Consensus 81 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVL---KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHcCChHHHHHHHHHHH---hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 999999999999999888 3345 34555555 57889999999999999998 2233 56788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 153 GALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..+...+...|++++|...++.+.+..|.+...+..+...|...|++++|...|+...+..
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999988899999999999999999999999988654
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.4e-11 Score=115.25 Aligned_cols=205 Identities=11% Similarity=-0.006 Sum_probs=172.6
Q ss_pred hHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 4 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
..+.+.. |+..++..+...|.+.|++++|...|+.+.+ .+...|..+...+...|++++|+..|++..+.. +.+
T Consensus 261 ~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 337 (514)
T 2gw1_A 261 KKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PEN 337 (514)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSC
T ss_pred HHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhh
Confidence 3344433 4477888889999999999999999988764 367889999999999999999999999998753 335
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----cchH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM----PIKPN----GVVW 152 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~ 152 (352)
..++..+...+...|++++|...++.+... .+.+..++..+...|.+.|++++|...++++ +..++ ...|
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 678888999999999999999999998853 2335678999999999999999999999887 22222 3389
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 153 GALLGGCRV---HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 153 ~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..+...+.. .|++++|...++.+.+..|.+...+..+..+|.+.|++++|...|++..+.+
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999999999889888888999999999999999999999988754
No 28
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.41 E-value=6.9e-11 Score=104.90 Aligned_cols=205 Identities=11% Similarity=0.020 Sum_probs=170.4
Q ss_pred hHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-
Q 048117 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP- 79 (352)
Q Consensus 4 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 79 (352)
..+.+.. +.+..++..+...|.+.|++++|...|+...+ | +...|..+...+...|++++|+..|++..+. .|
T Consensus 27 ~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~ 103 (359)
T 3ieg_A 27 HAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPS 103 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCC
T ss_pred HHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCc
Confidence 3444432 34678899999999999999999999998764 3 6789999999999999999999999999874 45
Q ss_pred ---cHHHHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048117 80 ---NGVTFIGL------------LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM- 143 (352)
Q Consensus 80 ---~~~t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m- 143 (352)
+...+..+ ...+...|++++|.+.++.+... .+.+...+..+...|.+.|++++|...+++.
T Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 181 (359)
T 3ieg_A 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAAS 181 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444 47888999999999999999853 3446788999999999999999999999998
Q ss_pred CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH------------HHHHHHHccCHHHHHHHHHHHH
Q 048117 144 PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV------------LSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 144 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
...| +..+|..+...+...|+.++|...++...+..|.+...+.. +...+.+.|++++|...+++..
T Consensus 182 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 261 (359)
T 3ieg_A 182 KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 261 (359)
T ss_dssp TTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444 66789999999999999999999999999988887665442 3667899999999999999988
Q ss_pred hcC
Q 048117 211 NLG 213 (352)
Q Consensus 211 ~~g 213 (352)
+..
T Consensus 262 ~~~ 264 (359)
T 3ieg_A 262 KTE 264 (359)
T ss_dssp HHC
T ss_pred hcC
Confidence 754
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.40 E-value=1.3e-11 Score=108.32 Aligned_cols=197 Identities=11% Similarity=0.021 Sum_probs=163.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
+...+..+...+.+.|++++|..+|+.+.+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 445567788889999999999999998864 377899999999999999999999999998763 4467788999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHhC-CCCC-CcchHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM--------------VD-LLSRAGFLQEAYEFIRNM-PIKP-NGVVWG 153 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 153 (352)
+...|++++|.+.++..... .+.+...+..+ .. .+...|++++|.+.++++ ...| +...|.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 99999999999999998843 22223344333 22 377889999999999988 2233 567899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 154 ALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
.+...+...|++++|...++.+.+..|.+...+..+...|...|++++|.+.|++..+..
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999888889999999999999999999999987754
No 30
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.39 E-value=7.2e-12 Score=118.05 Aligned_cols=206 Identities=10% Similarity=0.019 Sum_probs=154.1
Q ss_pred hHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 048117 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI----- 75 (352)
Q Consensus 4 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 75 (352)
..+++.. +.++.++..+...|.+.|++++|.+.|+...+ .+..+|..+...+...|++++|+..|+.+...
T Consensus 49 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 127 (537)
T 3fp2_A 49 QYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDG 127 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-------
T ss_pred HHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCh
Confidence 3444433 34678888888889999999999999987764 36778888888888888888888777433100
Q ss_pred --------------------------------------------------------------------------------
Q 048117 76 -------------------------------------------------------------------------------- 75 (352)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (352)
T Consensus 128 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207 (537)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence
Q ss_pred ----------------------CCCcc--------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 76 ----------------------GIKPN--------GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 76 ----------------------g~~p~--------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
...|+ ..++..+...+...|++++|...++..... .|+...+..+..
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~ 284 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLAL 284 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHH
Confidence 01122 123444556667778888888888887743 455777888888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHH
Q 048117 126 LLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (352)
.|.+.|++++|.+.|++. ...| +..+|..+...+...|++++|...++.+.+..|.+...+..+...|...|++++|.
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888877 2233 56678888888899999999999999988888888888888888899999999999
Q ss_pred HHHHHHHhcC
Q 048117 204 RVRKLMRNLG 213 (352)
Q Consensus 204 ~~~~~m~~~g 213 (352)
..+++..+..
T Consensus 365 ~~~~~~~~~~ 374 (537)
T 3fp2_A 365 AFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9998887754
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=9.3e-11 Score=94.39 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34556666666666666666666666665532 123445666666666666666666666665532 122344555555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHH
Q 048117 125 DLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (352)
..+...++++.|...+.+. ...| +...|..+-..+.+.|++++|...|++..+..|.+...+..+..+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666666666666666655 2222 3445666666677777777777777777766676666666677777777777777
Q ss_pred HHHHHHHHhc
Q 048117 203 ARVRKLMRNL 212 (352)
Q Consensus 203 ~~~~~~m~~~ 212 (352)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777766543
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.38 E-value=3e-13 Score=122.10 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=70.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG----------------- 76 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------------- 76 (352)
++.+|+.|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+..++..++..
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhC
Confidence 3456777777777777777777777543 455566666666666666666666444443320
Q ss_pred ---------CCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 048117 77 ---------IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147 (352)
Q Consensus 77 ---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 147 (352)
-.|+..+|..+...|...|.+++|...|..+ ..|..|++.+.+.|++++|.+.+++++
T Consensus 109 ~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA~--- 175 (449)
T 1b89_A 109 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN--- 175 (449)
T ss_dssp CHHHHTTTTTCC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHT---
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHcC---
Confidence 0234444555555555555555555555433 357777777777777777777777773
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 148 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
++.+|..++.+|...|+++.|......+. ..| .....++..|.+.|++++|..+++....
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA---DELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 67788888888888888888855544322 222 2344688889999999999888887653
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.36 E-value=1e-10 Score=98.87 Aligned_cols=173 Identities=15% Similarity=0.012 Sum_probs=147.9
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGL 87 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 87 (352)
+.+..++..+...|.+.|++++|.+.|+...+ .+...|..+...+...|++++|++.|+++.+.+..| +...+..+
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence 34678899999999999999999999998764 377899999999999999999999999998744455 45678888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCH
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 165 (352)
...+...|++++|.+.++...+. . +.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|+.
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH
Confidence 99999999999999999998853 2 345788999999999999999999999998 4344 556788888999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchH
Q 048117 166 DLAEEASRQLDQLDPLNNGYH 186 (352)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~ 186 (352)
++|.+.++.+.+..|.+....
T Consensus 226 ~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 226 DTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999888776443
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.36 E-value=2.9e-11 Score=103.52 Aligned_cols=195 Identities=11% Similarity=0.005 Sum_probs=159.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
+..++..+...|...|++++|...|+...+ .+..+|..+...+...|++++|+..|++..+.. +.+..++..+...
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 567889999999999999999999998764 368899999999999999999999999998752 3357788899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIK-PNGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a 168 (352)
+...|++++|...++.+.+. .|+......++..+.+.|++++|...+++. ... ++...| .++..+...++.++|
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHH
Confidence 99999999999999999843 455555555666667889999999999776 222 344444 477778888888999
Q ss_pred HHHHHHHHhcCCC----CcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 169 EEASRQLDQLDPL----NNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 169 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
...+.......|. +...+..+...|.+.|++++|...|++..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999888764442 24567788999999999999999999998754
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.35 E-value=1.1e-10 Score=99.91 Aligned_cols=195 Identities=11% Similarity=0.014 Sum_probs=159.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN--GVTFIGLLHA 90 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a 90 (352)
.+.......|.+.|++++|...|+...+. +...|..+...+...|++++|+..|++..+..-.|+ ...|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34556677889999999999999987643 566899999999999999999999999987432222 3358889999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a 168 (352)
+...|++++|...++..... .+.+..++..+...|.+.|++++|.+.|++. ...|+ ...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998853 2335678999999999999999999999998 55554 45566666255556699999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccC---HHHHHHHHHHHHhc
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAER---WEDVARVRKLMRNL 212 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~ 212 (352)
...++.+.+..|.+...+..+...+...|+ +++|...+++..+.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 999999999999888888888888888888 88898888887654
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.35 E-value=7.4e-13 Score=119.60 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=35.4
Q ss_pred HHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 048117 26 VKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 105 (352)
-+.|++++|.++++++..|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37889999999999997665 999999999999999999999975 3688899999999999999999999777
Q ss_pred HhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 048117 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185 (352)
Q Consensus 106 ~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 185 (352)
...+ . .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..
T Consensus 86 ~ark--~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n 150 (449)
T 1b89_A 86 MARK--K-ARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC----C----------------CTTTHHHHHHHT--------TC
T ss_pred HHHH--h-CccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hh
Confidence 5553 2 45578899999999999999998888853 66678888888888888888888887765 25
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 048117 186 HVVLSNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~m 209 (352)
|..|++++.+.|++++|.+.++++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc
Confidence 566666666666666666666655
No 37
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=3e-11 Score=105.19 Aligned_cols=198 Identities=15% Similarity=0.121 Sum_probs=160.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--------C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--------R---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI------G 76 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 76 (352)
+..++..+...|...|++++|..+|+++.+ . ...+|..+...+...|++++|+..|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467788999999999999999999998765 2 3467889999999999999999999998754 2
Q ss_pred CCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC---
Q 048117 77 IKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-----GIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI--- 145 (352)
Q Consensus 77 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--- 145 (352)
-.| ...++..+...+...|++++|...++...... +-.| ....+..+...|.+.|++++|.+.|++. ..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 233 35578889999999999999999999887532 2223 3567888999999999999999999887 11
Q ss_pred -----CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------------------------------------
Q 048117 146 -----KP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQL----------------------------------------- 178 (352)
Q Consensus 146 -----~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------------------------------- 178 (352)
.| ...+|..+...+...|++++|...++++.+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 23 3446888889999999999999999988752
Q ss_pred --------CCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 179 --------DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 179 --------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
.|.....+..+..+|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233344566788999999999999999998765
No 38
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=9.6e-12 Score=116.03 Aligned_cols=192 Identities=11% Similarity=-0.021 Sum_probs=169.3
Q ss_pred CCHhHHHHHHHHHHHcCCH-HHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCL-EGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~-~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
.+...+..+-..|...|++ ++|.+.|++..+ | +...|..+...|.+.|++++|+..|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3678889999999999999 999999998764 3 6889999999999999999999999999875 58888899999
Q ss_pred HHHhcc---------CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC---
Q 048117 89 HACGHM---------GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA--------GFLQEAYEFIRNM-PIKP--- 147 (352)
Q Consensus 89 ~a~~~~---------g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p--- 147 (352)
.++... |++++|.+.+++..+. -+.+...|..+...|... |++++|.+.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999999 9999999999998843 233578899999999998 9999999999998 4445
Q ss_pred -CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 148 -NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 148 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
+...|..+...|...|++++|...|++..+..|.+...+..+..++...|++++|.+.+..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778999999999999999999999999999999888888999999999999999876543
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.35 E-value=8.3e-11 Score=98.68 Aligned_cols=175 Identities=14% Similarity=0.033 Sum_probs=150.7
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
+.+..++..+...|.+.|++++|...|+...+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+.
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 132 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLG 132 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34678899999999999999999999998764 377899999999999999999999999998753 44677888899
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHH
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNID 166 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~ 166 (352)
..+...|++++|...++..... .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|+.+
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence 9999999999999999998853 2346788999999999999999999999987 2233 5678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHH
Q 048117 167 LAEEASRQLDQLDPLNNGYHVVL 189 (352)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~l 189 (352)
+|...++++.+..|.+...+..+
T Consensus 211 ~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 211 KALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccCcchHHHHHHH
Confidence 99999999999999877665544
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.34 E-value=7.8e-11 Score=110.92 Aligned_cols=199 Identities=14% Similarity=0.032 Sum_probs=153.1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
.|+..++..+...|.+.|++++|...|+...+ .+..+|..+...+...|++++|+..|++..+.. +.+..++..+.
T Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 351 (537)
T 3fp2_A 273 HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA 351 (537)
T ss_dssp CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45677777888888888888888888887653 367788888888888888888888888887653 23456777888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCC----CcchHHHHHHHHH
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM----PIKP----NGVVWGALLGGCR 160 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~~~~~~li~~~~ 160 (352)
..+...|++++|...++..... .+.+...+..+...|.+.|++++|.+.|++. +..+ ....+......+.
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 8888888999888888888743 2344667888888888889999988888886 1111 1122334445666
Q ss_pred hc----------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 161 VH----------KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 161 ~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
+. |++++|...++...+..|.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 430 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 66 888999999999888888888888888899999999999999999887654
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.34 E-value=2e-10 Score=94.95 Aligned_cols=166 Identities=10% Similarity=-0.051 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++..... .+.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 56788999999999999999999999998753 345778889999999999999999999998853 234677899999
Q ss_pred HHHHhc-CCHHHHHHHHHhC-C--CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCH
Q 048117 125 DLLSRA-GFLQEAYEFIRNM-P--IKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERW 199 (352)
Q Consensus 125 ~~~~~~-g~~~~A~~~~~~m-~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (352)
..|... |++++|...++++ . ..| +...|..+...+...|+.++|...++++.+..|.+...+..+...|.+.|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 999999 9999999999988 3 333 2567888999999999999999999999998898888889999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 048117 200 EDVARVRKLMRNLG 213 (352)
Q Consensus 200 ~~a~~~~~~m~~~g 213 (352)
++|...++...+..
T Consensus 164 ~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 164 GDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987643
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=1.2e-10 Score=93.81 Aligned_cols=167 Identities=13% Similarity=0.028 Sum_probs=143.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
-+..+|..|-..|.+.|++++|.+.|++..+ .+..+|..+...+.+.|++++|+..+.+..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4678899999999999999999999998764 378899999999999999999999999998753 335667777888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHH
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDL 167 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 167 (352)
.+...++++.+...+...... .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...|.+.|+.++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999988742 3445778899999999999999999999988 4444 56789999999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 048117 168 AEEASRQLDQLDPLN 182 (352)
Q Consensus 168 a~~~~~~~~~~~~~~ 182 (352)
|...|++..+..|.+
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999887754
No 43
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=1.4e-10 Score=92.60 Aligned_cols=160 Identities=11% Similarity=-0.057 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 92 (352)
..+..+...|...|++++|...|+.+.+. +...|..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555566666666666666655432 44555556666666666666666666655431 223444445555555
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
..|++++|.+.++..... .+.+... |..+...+...|+.++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~--------------------------------~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNV--------------------------------RFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHH--------------------------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHH--------------------------------HHHHHHHHHHcCcHHHHHHHH
Confidence 555555555555554421 1223334 444444445555555555555
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 173 RQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
+.+.+..|.+...+..+...|...|++++|.+.++...
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55444444444444455555555555555555555443
No 44
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=2.1e-10 Score=91.58 Aligned_cols=128 Identities=16% Similarity=0.020 Sum_probs=109.4
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
.+..++..+...|.+.|++++|...|+...+ .+...|..+...+...|++++|.+.|+++.+. .+.+...+..+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~ 118 (186)
T 3as5_A 40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGV 118 (186)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHH
Confidence 4678899999999999999999999998764 36788999999999999999999999999876 3456778888999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
.+...|++++|...++..... .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999998853 2345677888888888888888888888776
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=1.8e-09 Score=92.63 Aligned_cols=191 Identities=10% Similarity=-0.002 Sum_probs=164.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccC-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAI----HGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
+..++..+-..|.+.|++++|...|+...++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5677888889999999999999999988766 67889999999999 999999999999998876 677788888
Q ss_pred HHHhc----cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCcchHHHHHHHH
Q 048117 89 HACGH----MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR----AGFLQEAYEFIRNM-PIKPNGVVWGALLGGC 159 (352)
Q Consensus 89 ~a~~~----~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~ 159 (352)
..|.. .+++++|...++..... + +...+..+...|.+ .+++++|.+.|++. ... +...+..+-..|
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~ 156 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 88888 99999999999988853 3 67889999999999 99999999999987 322 566788888888
Q ss_pred Hh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC
Q 048117 160 RV----HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE----AERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 160 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 214 (352)
.. .++.++|...+++..+.+ ++..+..+..+|.. .+++++|.+.|++..+.+.
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 88 899999999999988764 34577788889999 9999999999999887643
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.28 E-value=2.2e-10 Score=95.17 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=143.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHH
Q 048117 44 RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123 (352)
Q Consensus 44 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 123 (352)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++...+. -+.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 356788889999999999999999999998742 335778888999999999999999999998843 23346788999
Q ss_pred HHHHHhc-----------CCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 048117 124 VDLLSRA-----------GFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190 (352)
Q Consensus 124 i~~~~~~-----------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 190 (352)
...|.+. |++++|...|++. ...| +...|..+-..+...|+.++|...+++..+.. .++..+..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 9999999 9999999999988 4455 46678889999999999999999999999877 7788888999
Q ss_pred HHHHHccCHHHHHHHHHHHHhcC
Q 048117 191 NIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
.+|...|++++|...|++..+..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999988753
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.27 E-value=2.4e-10 Score=96.62 Aligned_cols=173 Identities=12% Similarity=-0.010 Sum_probs=146.1
Q ss_pred HhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---C-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048117 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---T-------VFTWSAMIQGLAIHGQAKEALTSFNKM 72 (352)
Q Consensus 3 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~-------~~~~~~li~~~~~~g~~~~A~~l~~~m 72 (352)
+..+.+.. .+..++..+...|.+.|++++|...|+...+. + ..+|..+...+...|++++|+..|++.
T Consensus 28 ~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 28 YNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS 105 (258)
T ss_dssp HHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44555655 78889999999999999999999999987642 2 688999999999999999999999999
Q ss_pred HHcC------------------------CCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHH
Q 048117 73 IEIG------------------------IKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127 (352)
Q Consensus 73 ~~~g------------------------~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~ 127 (352)
.+.. ..| +...+..+...+...|++++|...++..... .+.+..++..+...|
T Consensus 106 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~ 183 (258)
T 3uq3_A 106 LTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAAL 183 (258)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHH
Confidence 8732 233 3456788889999999999999999999853 244578899999999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048117 128 SRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179 (352)
Q Consensus 128 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 179 (352)
.+.|++++|...|++. ...| +...|..+...+...|+.++|...++...+..
T Consensus 184 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 184 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999988 3334 46789999999999999999999999988766
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.26 E-value=2.1e-09 Score=92.17 Aligned_cols=193 Identities=11% Similarity=-0.020 Sum_probs=165.5
Q ss_pred CCHhHHHHHHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCccHHH
Q 048117 13 RNIRVCNTLIDMYVK----CGCLEGARRVFIEMEER-TVFTWSAMIQGLAI----HGQAKEALTSFNKMIEIGIKPNGVT 83 (352)
Q Consensus 13 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 83 (352)
.+..++..|-..|.. .|++++|...|++..+. +..++..+...|.. .+++++|+..|++..+.+ +...
T Consensus 36 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 112 (273)
T 1ouv_A 36 KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEG 112 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccH
Confidence 356778889999999 99999999999987654 78899999999999 999999999999998875 6778
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCcchHHHH
Q 048117 84 FIGLLHACGH----MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR----AGFLQEAYEFIRNMPIKPNGVVWGAL 155 (352)
Q Consensus 84 ~~~ll~a~~~----~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l 155 (352)
+..+-..|.. .++.++|...++...+. + +...+..+...|.+ .+++++|...|++.-...+...+..+
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 188 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNA 188 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888 99999999999998853 4 56778888888888 99999999999987212356778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC
Q 048117 156 LGGCRV----HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE----AERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 156 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 214 (352)
-..|.. .++.++|...+++..+.+| ...+..+..+|.+ .+++++|.+.|++..+.|.
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 889999 9999999999999888765 4567788888988 9999999999999888764
No 49
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=1.2e-10 Score=113.36 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGC 122 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~ 122 (352)
+..+|+.|-..+.+.|++++|++.|++..+. .|+ ...+..+-.++.+.|++++|.+.|++..+- .|+ ...|+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456777777777777777777777777663 343 556777777777777777777777776632 343 567777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHH
Q 048117 123 MVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200 (352)
Q Consensus 123 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (352)
|...|.+.|++++|++.|++. .+.| +...|+.+-..|.+.|++++|...|++..+..|++...+..|..+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 777788888888887777776 4444 45567778888888888888888888888888887777888888888888888
Q ss_pred HHHHHHHHHHh
Q 048117 201 DVARVRKLMRN 211 (352)
Q Consensus 201 ~a~~~~~~m~~ 211 (352)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777776543
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.25 E-value=3.7e-10 Score=96.54 Aligned_cols=182 Identities=12% Similarity=-0.136 Sum_probs=151.2
Q ss_pred HcCCHHHHHHHHHhcccC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHH
Q 048117 27 KCGCLEGARRVFIEMEER-------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDE 99 (352)
Q Consensus 27 ~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 99 (352)
..|++++|...|+.+.+. +..+|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457899999999988753 46789999999999999999999999998753 3467889999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048117 100 GRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178 (352)
Q Consensus 100 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 178 (352)
|...++..... .+.+...+..+...|.+.|++++|.+.|+++ ...|+...+...+..+...|+.++|...+......
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999853 2345788999999999999999999999998 44566666666666677889999999999988887
Q ss_pred CCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.|++...+ .+...+...++.++|.+.++...+.
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 77665444 4667788889999999998877543
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=1.2e-09 Score=95.64 Aligned_cols=199 Identities=8% Similarity=-0.007 Sum_probs=158.8
Q ss_pred CCCHhHHHHHHHHHH-------HcCCH-------HHHHHHHHhccc---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYV-------KCGCL-------EGARRVFIEMEE---R-TVFTWSAMIQGLAIHGQAKEALTSFNKMI 73 (352)
Q Consensus 12 ~~~~~~~~~li~~~~-------~~g~~-------~~A~~~f~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 73 (352)
+.++.+|..+...+. +.|++ ++|..+|+...+ | +...|..+...+.+.|++++|..+|++..
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 346778888887776 35886 899999997654 3 66799999999999999999999999998
Q ss_pred HcCCCccH-H-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHhC-CCCC-C
Q 048117 74 EIGIKPNG-V-TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS-RAGFLQEAYEFIRNM-PIKP-N 148 (352)
Q Consensus 74 ~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m-~~~p-~ 148 (352)
+ +.|+. . .|..+...+.+.|++++|..+|+...+. .+++...|........ ..|++++|..+|++. ...| +
T Consensus 127 ~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 127 A--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp T--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred h--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 7 45643 3 7889999999999999999999998842 2334555554444432 369999999999987 2223 5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQL---DPL-NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 149 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
...|..++..+.+.|+.++|..+|++.... .|. ....+..++..+.+.|+.+.|..+++++.+...
T Consensus 203 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 678999999999999999999999999884 332 445777888889999999999999999887543
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=3.1e-09 Score=88.57 Aligned_cols=189 Identities=12% Similarity=-0.063 Sum_probs=136.6
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE----RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGL 87 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 87 (352)
.|+..+..+-..|.+.|++++|...|+...+ ++...|..+..++...|++++|+..|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4667888888899999999999999997663 67778888999999999999999999999874 45 45678889
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cchHHHHH
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQI-------EHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN---GVVWGALL 156 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li 156 (352)
..++...|++++|...++...+.. +.+. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+-
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999888531 2233 45778888888999999999999887 55665 45566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
..|...|+ ..++.+....+.....+..+. ....+.+++|...|++..+.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 66655544 334444444433333332222 23344556666666655543
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.18 E-value=3.9e-10 Score=101.84 Aligned_cols=192 Identities=11% Similarity=0.047 Sum_probs=164.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQ-AKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
..+|+.+-..+.+.|++++|...|+...+ | +...|+.+...+...|+ +++|+..|++..+.. +-+...|..+-.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 46788888999999999999999998774 3 67899999999999997 999999999998853 2356789999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHh-cCCHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRV-HKNIDL 167 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~-~g~~~~ 167 (352)
+...|++++|...|+..... -+-+...|..+..++.+.|++++|+..|+++ ...| +...|+.+-..+.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999842 2335788999999999999999999999998 4445 56789999999988 666577
Q ss_pred H-----HHHHHHHHhcCCCCcchHHHHHHHHHHcc--CHHHHHHHHHHH
Q 048117 168 A-----EEASRQLDQLDPLNNGYHVVLSNIYAEAE--RWEDVARVRKLM 209 (352)
Q Consensus 168 a-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m 209 (352)
| ...+++.....|.+...+..+...+...| ++++|.+.+.++
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 6 58899999999999999999988898888 689999988887
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=5.6e-09 Score=91.46 Aligned_cols=198 Identities=9% Similarity=-0.025 Sum_probs=155.7
Q ss_pred HhHHHHHHHHHHHc----CCH----HHHHHHHHhccc---CCHHHHHHHHHHHHH-------cCCH-------HHHHHHH
Q 048117 15 IRVCNTLIDMYVKC----GCL----EGARRVFIEMEE---RTVFTWSAMIQGLAI-------HGQA-------KEALTSF 69 (352)
Q Consensus 15 ~~~~~~li~~~~~~----g~~----~~A~~~f~~m~~---~~~~~~~~li~~~~~-------~g~~-------~~A~~l~ 69 (352)
...|...++.--+. ++. ++|..+|+.... .++..|..+...+.. .|+. ++|..+|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 45566666664443 233 678889988765 377889988888764 5886 8999999
Q ss_pred HHHHHcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 048117 70 NKMIEIGIKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IE-HYGCMVDLLSRAGFLQEAYEFIRNM-PI 145 (352)
Q Consensus 70 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~ 145 (352)
++..+. +.|+ ...|..+...+.+.|++++|.++|+...+ +.|+ .. +|..+...+.+.|++++|..+|++. ..
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999873 3454 55788999999999999999999999983 4565 33 8999999999999999999999998 43
Q ss_pred CC-CcchHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC-Ccc
Q 048117 146 KP-NGVVWGALLGGC-RVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG-VKK 216 (352)
Q Consensus 146 ~p-~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~~ 216 (352)
.| +...|....... ...|+.++|..+|+...+..|.++..+..++..+.+.|++++|..+|++..+.. +.|
T Consensus 164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 44 334454333332 237999999999999999889888899999999999999999999999998864 344
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=5.2e-10 Score=104.25 Aligned_cols=179 Identities=13% Similarity=0.043 Sum_probs=154.0
Q ss_pred HHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048117 31 LEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQA-KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS 106 (352)
Q Consensus 31 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 106 (352)
+++|...++.... .+...|..+...+...|++ ++|++.|++..+.. +-+...+..+..+|...|++++|.+.|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555566665443 3678999999999999999 99999999998752 23477899999999999999999999999
Q ss_pred hHHhcCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc--------CCHHH
Q 048117 107 MTTEYGIIPQIEHYGCMVDLLSRA---------GFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVH--------KNIDL 167 (352)
Q Consensus 107 m~~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~--------g~~~~ 167 (352)
.. .+.|+...+..+...|... |++++|.+.|++. ...| +...|..+..+|... |++++
T Consensus 163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 88 4468888899999999999 9999999999998 3344 567899999999988 99999
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 168 AEEASRQLDQLDP---LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 168 a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
|...|++..+..| .+...+..+..+|...|++++|.+.|++..+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999888 888899999999999999999999999987754
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.15 E-value=1e-09 Score=93.71 Aligned_cols=197 Identities=9% Similarity=-0.034 Sum_probs=156.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RT----VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGL 87 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 87 (352)
+..++..+...|.+.|++++|...|+...+ ++ ..+|..+...+...|++++|+..|++..+.. +.+..++..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 114 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQI 114 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 455888999999999999999999998765 22 3458999999999999999999999998753 3356788999
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCC-
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCRVHKN- 164 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~- 164 (352)
...+...|++++|...++..... .+.+...+..+...+...+++++|.+.|++. ...|+ ...|..+...+...|+
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPD 192 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcc
Confidence 99999999999999999988732 2334667777773444456999999999988 44454 5667778888888888
Q ss_pred --HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 165 --IDLAEEASRQLDQLD---PLN-----NGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 165 --~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
.++|...+++..+.. |+. ...+..+...|...|++++|.+.|++..+..
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 778888888877632 331 1456678889999999999999999998754
No 57
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=1.7e-09 Score=92.51 Aligned_cols=197 Identities=14% Similarity=0.131 Sum_probs=101.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcccC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEER-----------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI------GI 77 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 77 (352)
..++..+...|...|++++|...|++..+. ...+|..+...+...|++++|+..|.+..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445556666666666666666666554311 2345566666666666666666666665432 11
Q ss_pred Cc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-------
Q 048117 78 KP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-----GIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM------- 143 (352)
Q Consensus 78 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m------- 143 (352)
.| ...++..+...+...|++++|...++...... +-.| ...++..+...|.+.|++++|.+.+++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 23355556666666666666666666555320 0011 2345555666666666666666666554
Q ss_pred ---CCCCCcc-hHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 144 ---PIKPNGV-VWGALLGGCRVHKNI------DLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 144 ---~~~p~~~-~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
...+... .|..+...+...+.. ..+...+.......|.....+..+...|...|++++|.+.|++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0122222 222222222221111 1111111111111233334566788999999999999999998765
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.14 E-value=1.7e-09 Score=97.71 Aligned_cols=195 Identities=12% Similarity=0.097 Sum_probs=163.0
Q ss_pred CHhHHHHHHHHHHHcCC-HHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGC-LEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
+..+|+.+-..|.+.|+ +++|...|++..+ .+...|+.+..++...|++++|+..|+++.+.. +-+...|..+-.
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~ 208 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQW 208 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHH
Confidence 57889999999999997 9999999998875 378899999999999999999999999998753 336778999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh-cCCHHHH-----HHHHHhC-CCCC-CcchHHHHHHHHHh
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR-AGFLQEA-----YEFIRNM-PIKP-NGVVWGALLGGCRV 161 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m-~~~p-~~~~~~~li~~~~~ 161 (352)
++.+.|++++|...++.+.+. -+-+...|+.+...|.+ .|..++| ++.|++. ...| +...|+.+...+..
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 999999999999999999853 23357889999999999 6665777 4667666 4455 45678888888888
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc---------CHHHHHHHHHHH-Hhc
Q 048117 162 HK--NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE---------RWEDVARVRKLM-RNL 212 (352)
Q Consensus 162 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~~ 212 (352)
.| +.++|...+..+ +..|++...+..+..+|.+.| ..++|.++|+++ .+.
T Consensus 287 ~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 88 689999999888 778888888889999998875 358999999998 554
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=3.4e-09 Score=88.31 Aligned_cols=153 Identities=10% Similarity=-0.018 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHH
Q 048117 44 RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGC 122 (352)
Q Consensus 44 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~ 122 (352)
.|+..|......+...|++++|+..|++..+..-+++...+..+..++...|++++|...++.... ..| +...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 366788889999999999999999999998875447888888899999999999999999998884 344 4678999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-c-------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 048117 123 MVDLLSRAGFLQEAYEFIRNM-PIKPN-G-------VVWGALLGGCRVHKNIDLAEEASRQLDQLDPL--NNGYHVVLSN 191 (352)
Q Consensus 123 li~~~~~~g~~~~A~~~~~~m-~~~p~-~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 191 (352)
+...|.+.|++++|.+.|++. ...|+ . ..|..+-..+...|++++|...+++..+..|. ....+..+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999988 33443 3 45777778899999999999999999999998 7778888888
Q ss_pred HHHHccCH
Q 048117 192 IYAEAERW 199 (352)
Q Consensus 192 ~~~~~g~~ 199 (352)
.|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777665
No 60
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.07 E-value=2.3e-08 Score=94.37 Aligned_cols=195 Identities=8% Similarity=0.007 Sum_probs=155.7
Q ss_pred CCHhHHHHHHHHHHH-------cCCHH-------HHHHHHHhccc---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVK-------CGCLE-------GARRVFIEMEE---R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74 (352)
Q Consensus 13 ~~~~~~~~li~~~~~-------~g~~~-------~A~~~f~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 74 (352)
.+..+|..+...+.+ .|+++ +|..+|+...+ | +...|..++..+.+.|++++|..+|+++.+
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 467788888888876 69987 89999998763 4 688999999999999999999999999988
Q ss_pred cCCCccH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-C
Q 048117 75 IGIKPNG--VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDL-LSRAGFLQEAYEFIRNM-PIKP-N 148 (352)
Q Consensus 75 ~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~ 148 (352)
. .|+. ..|...+..+.+.|++++|.++|+...+. .|+ ...|...... +...|+.++|..+|++. ...| +
T Consensus 350 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 350 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp S--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred c--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 4 5652 47888888888999999999999988842 333 3333332222 34689999999999987 3334 5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG----YHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 149 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
...|..++..+.+.|+.++|..+|++.....|.++. .+...+......|+.+.+.++++++.+.
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999887665443 5666677778899999999999988764
No 61
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=6.4e-09 Score=90.38 Aligned_cols=194 Identities=12% Similarity=0.017 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccC-----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcc-H
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEER-----T----VFTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKPN-G 81 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 81 (352)
..|+.....|...|++++|...|++..+- + ..+|+.+...|.+.|++++|+..|++..+. |-.+. .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35777888899999999999999876531 2 568999999999999999999999998642 21111 3
Q ss_pred HHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc-----
Q 048117 82 VTFIGLLHACGHM-GWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV----- 150 (352)
Q Consensus 82 ~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----- 150 (352)
.+++.+...|... |++++|...|++...-..-..+ ..+++.+...|.+.|++++|...|++. ...|+..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788889999996 9999999999888742110111 356888999999999999999999987 3233221
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--HccCHHHHHHHHHHH
Q 048117 151 ---VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-----HVVLSNIYA--EAERWEDVARVRKLM 209 (352)
Q Consensus 151 ---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 209 (352)
.|..+..++...|+.++|...+++..+..|..... ...+..+|. ..+++++|.+.|+.+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 46777788999999999999999998877754332 234555564 456688888777554
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.04 E-value=2.3e-09 Score=93.18 Aligned_cols=168 Identities=13% Similarity=0.087 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----C
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI-------GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-----G 112 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----g 112 (352)
+..+|..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++...... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4578999999999999999999999999763 233345678889999999999999999998887431 2
Q ss_pred CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC--------CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 048117 113 IIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI--------KP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQL--- 178 (352)
Q Consensus 113 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 178 (352)
-.| ...++..+...|...|++++|.+.|++. .. .| ....|..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 222 3578889999999999999999999887 11 12 3456888889999999999999999998764
Q ss_pred -----CCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 179 -----DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 179 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.|.....+..+...|...|++++|.+.+++..+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333446678889999999999999999998763
No 63
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.1e-08 Score=76.75 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHH
Q 048117 49 WSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128 (352)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~ 128 (352)
|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++.+... + +.+...+..+...|.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHHH
Confidence 4444444444455555555555444321 123334444444444444444444444444421 1 122333344444444
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 129 RAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 129 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
+.|++++|.+.++++ ...| +...|..+...+.+.|+.++|...+.++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 444444444444433 1111 223333344444444444444444444333
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.03 E-value=5.3e-09 Score=101.94 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=140.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLH 89 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 89 (352)
+..+++.|-..|.+.|++++|.+.|++..+ | +..+|+.+..+|.+.|++++|+..|++..+. .|+ ...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 467899999999999999999999998764 3 6889999999999999999999999999874 454 678999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHH
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNID 166 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~ 166 (352)
++.+.|++++|.+.|++..+- .| +...|+.|...|.+.|++++|++.|++. ...| +...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999988842 44 4788999999999999999999999987 5556 4667999999999999999
Q ss_pred HHHHHHHHHHh
Q 048117 167 LAEEASRQLDQ 177 (352)
Q Consensus 167 ~a~~~~~~~~~ 177 (352)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 65
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=1.4e-08 Score=76.10 Aligned_cols=129 Identities=18% Similarity=0.198 Sum_probs=110.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 048117 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCR 160 (352)
Q Consensus 83 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 160 (352)
.+..+...+...|++++|..+++.+... . +.+...+..+...+...|++++|...++++ ...| +...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4567788889999999999999999853 2 345778888999999999999999999988 2223 5667888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..|++++|...++.+.+..|.+...+..+...|.+.|++++|.+.++++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999888888888889999999999999999999987653
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=1.2e-07 Score=80.54 Aligned_cols=182 Identities=9% Similarity=-0.054 Sum_probs=108.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-Ccc-HHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-T---VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI-KPN-GVTFI 85 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 85 (352)
+...+-.+-..+.+.|++++|...|+...+ | + ...|..+..++.+.|++++|+..|++..+..- .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344455555566666666666666666553 2 2 44556666666666666666666666655311 111 23444
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHH
Q 048117 86 GLLHACGH--------MGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156 (352)
Q Consensus 86 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li 156 (352)
.+..++.. .|++++|...|+..... .|+ .....++.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 45555555 66666666666666533 122 12222211111000000 01135667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHc----------cCHHHHHHHHHHHHhcC
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDPLNN---GYHVVLSNIYAEA----------ERWEDVARVRKLMRNLG 213 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g 213 (352)
..|.+.|++++|...|+.+.+..|.+. ..+..+..+|... |++++|...|++..+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 889999999999999999998888643 3566777788766 99999999999988753
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.96 E-value=1.3e-08 Score=91.85 Aligned_cols=126 Identities=10% Similarity=-0.020 Sum_probs=52.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----cch
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGFLQEAYEFIRNM-PI---KPN----GVV 151 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~ 151 (352)
+..+...+...|++++|...++.......-.++ ..++..+...|...|++++|...+++. .. .++ ..+
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 444444444455555555444444321100111 124444444555555555555444443 00 000 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHccCHHHHHHHHHHH
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQLDQLDPLN------NGYHVVLSNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 209 (352)
+..+...|...|++++|...++...+..+.. ...+..+...|...|++++|.+.+++.
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444555555555555555443321100 123334444455555555555555443
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.95 E-value=8.3e-09 Score=93.65 Aligned_cols=196 Identities=14% Similarity=0.059 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-cH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEER---------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKP-NG 81 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~ 81 (352)
.++..+...|...|++++|...|++..+. ...+|..+...|...|++++|+..|++..+. +-.| ..
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 46777778888888888888887765431 3467777888888888888888888877542 1122 23
Q ss_pred HHHHHHHHHHhccCC-----------------HHHHHHHHHHhHHh---cCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 048117 82 VTFIGLLHACGHMGW-----------------VDEGRRFFYSMTTE---YGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFI 140 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~-----------------~~~a~~~~~~m~~~---~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 140 (352)
.++..+...+...|+ +++|.+.+++...- .+..+. ..++..+...|...|++++|.+.+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 366777777888888 88887777665421 121121 346777778888888888888888
Q ss_pred HhC-CCCC---C----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHccCHHHHHHHH
Q 048117 141 RNM-PIKP---N----GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN------NGYHVVLSNIYAEAERWEDVARVR 206 (352)
Q Consensus 141 ~~m-~~~p---~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~ 206 (352)
++. ...| + ..+|..+...|...|++++|...+++.....+.. ...+..+...|...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776 1111 1 2267777788888888888888888776533211 234556777888888888888888
Q ss_pred HHHHh
Q 048117 207 KLMRN 211 (352)
Q Consensus 207 ~~m~~ 211 (352)
++..+
T Consensus 327 ~~al~ 331 (411)
T 4a1s_A 327 NRHLA 331 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.94 E-value=6.4e-09 Score=90.96 Aligned_cols=195 Identities=12% Similarity=0.033 Sum_probs=98.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcc-
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE---------RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKPN- 80 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~- 80 (352)
..++..+...|...|++++|...|+...+ ....+|..+...+...|++++|...|++..+. +-.+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 66666666666666666666666665432 12455666666666666666666666665321 10111
Q ss_pred HHHHHHHHHHHhccCC--------------------HHHHHHHHHHhHHh---cCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 048117 81 GVTFIGLLHACGHMGW--------------------VDEGRRFFYSMTTE---YGIIPQ-IEHYGCMVDLLSRAGFLQEA 136 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~--------------------~~~a~~~~~~m~~~---~g~~~~-~~~~~~li~~~~~~g~~~~A 136 (352)
..++..+...+...|+ +++|.+.++..... .+..+. ..++..+...|...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2245555555556666 66666555544321 111111 23455555555666666666
Q ss_pred HHHHHhC-CC---CC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHccCHHHH
Q 048117 137 YEFIRNM-PI---KP----NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN------NGYHVVLSNIYAEAERWEDV 202 (352)
Q Consensus 137 ~~~~~~m-~~---~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a 202 (352)
.+.+++. .. .+ ...+|..+...+...|++++|...+++.....+.. ...+..+...|...|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555554 00 00 11245555555555566666665555554321111 22333455555555666655
Q ss_pred HHHHHHH
Q 048117 203 ARVRKLM 209 (352)
Q Consensus 203 ~~~~~~m 209 (352)
...+++.
T Consensus 283 ~~~~~~a 289 (338)
T 3ro2_A 283 IDYHLKH 289 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=6.7e-08 Score=82.21 Aligned_cols=149 Identities=11% Similarity=-0.016 Sum_probs=106.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc--C----CHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCcc
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE--R----TVFTWSAMIQGLAI--------HGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~----~~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
..++..+-..|.+.|++++|...|+...+ | ...++..+..++.. .|++++|+..|++..+. .|+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcC
Confidence 57788889999999999999999998774 2 24567788888888 99999999999999875 344
Q ss_pred HH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHH
Q 048117 81 GV-TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN----GVVWGA 154 (352)
Q Consensus 81 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ 154 (352)
.. .... ...+...... -...+..+...|.+.|++++|...|++. ...|+ ...+..
T Consensus 130 ~~~~~~a--------------~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 130 HELVDDA--------------TQKIRELRAK-----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp CTTHHHH--------------HHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred chhHHHH--------------HHHHHHHHHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 22 2111 1111111110 0123556777888899999999988887 22343 335666
Q ss_pred HHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcc
Q 048117 155 LLGGCRVH----------KNIDLAEEASRQLDQLDPLNNG 184 (352)
Q Consensus 155 li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~ 184 (352)
+..+|... |++++|...++.+.+..|+++.
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 77777755 8889999999999988887753
No 71
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.94 E-value=8e-09 Score=93.77 Aligned_cols=199 Identities=10% Similarity=-0.018 Sum_probs=155.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEER---------TVFTWSAMIQGLAIHGQ-----------------AKEALT 67 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~ 67 (352)
...++..+-..|...|++++|...|++..+. ...+|..+...|...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 4567888999999999999999999876532 34688899999999999 999999
Q ss_pred HHHHHHHc----CCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHH
Q 048117 68 SFNKMIEI----GIKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGFLQEAYE 138 (352)
Q Consensus 68 l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~ 138 (352)
.|++..+. +-.|. ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99887532 22222 347788889999999999999999888743111112 2378889999999999999999
Q ss_pred HHHhC-CCCC-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHHccCHHHHHH
Q 048117 139 FIRNM-PIKP-------NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL------NNGYHVVLSNIYAEAERWEDVAR 204 (352)
Q Consensus 139 ~~~~m-~~~p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~ 204 (352)
.+++. ...| ...+|..+...+...|+.++|...+++.....+. ....+..+...|.+.|++++|.+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99876 1111 2467888889999999999999999998763221 12356678899999999999999
Q ss_pred HHHHHHhc
Q 048117 205 VRKLMRNL 212 (352)
Q Consensus 205 ~~~~m~~~ 212 (352)
.|++..+.
T Consensus 365 ~~~~al~~ 372 (411)
T 4a1s_A 365 YAEQHLQL 372 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.93 E-value=2e-08 Score=87.79 Aligned_cols=196 Identities=14% Similarity=0.001 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcc-HHH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEE--R-T----VFTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKPN-GVT 83 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t 83 (352)
..+...-..+.+.|++++|...|++..+ | + ...|..+...+...|++++|+..|++..+. +-.|. ..+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455667778899999999999998764 3 3 467889999999999999999999987532 22332 457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGF--------------------LQEAYEF 139 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 139 (352)
+..+...+...|++++|...++.......-.++ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 888889999999999999999887642222233 4578889999999999 9999988
Q ss_pred HHhC-------CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHccCHHHHHHH
Q 048117 140 IRNM-------PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN------NGYHVVLSNIYAEAERWEDVARV 205 (352)
Q Consensus 140 ~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~ 205 (352)
+++. +..| ...++..+...+...|++++|...+++..+..+.. ...+..+...|...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8775 2112 23468888889999999999999999987632211 12666788899999999999999
Q ss_pred HHHHHh
Q 048117 206 RKLMRN 211 (352)
Q Consensus 206 ~~~m~~ 211 (352)
+++..+
T Consensus 246 ~~~al~ 251 (338)
T 3ro2_A 246 YKKTLL 251 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 73
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.93 E-value=1.5e-08 Score=91.49 Aligned_cols=200 Identities=14% Similarity=0.008 Sum_probs=147.5
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcc
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-T----VFTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKPN 80 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~ 80 (352)
.+....+..+-..+.+.|++++|...|+...+ | + ...|..+...+...|++++|+..|++.... +-.|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34556667778888899999999999987764 2 3 357888888999999999999999987532 22332
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCC--------------------HHH
Q 048117 81 -GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGF--------------------LQE 135 (352)
Q Consensus 81 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~--------------------~~~ 135 (352)
..++..+...+...|++++|...++.......-.++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 446777888888999999999988877642111112 4478888888889999 888
Q ss_pred HHHHHHhC-------CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHHccCHHH
Q 048117 136 AYEFIRNM-------PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN------GYHVVLSNIYAEAERWED 201 (352)
Q Consensus 136 A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~ 201 (352)
|.+.+++. +..| ...+|..+...+...|++++|...+++..+..+... ..+..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88877665 2112 234677888889999999999999998876333222 256678888899999999
Q ss_pred HHHHHHHHHh
Q 048117 202 VARVRKLMRN 211 (352)
Q Consensus 202 a~~~~~~m~~ 211 (352)
|...+++..+
T Consensus 246 A~~~~~~al~ 255 (406)
T 3sf4_A 246 ASEYYKKTLL 255 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=7.1e-09 Score=88.50 Aligned_cols=147 Identities=14% Similarity=0.049 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCc-cHHHHHHHHHHHhccCCHHH
Q 048117 31 LEGARRVFIEMEER----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI------GIKP-NGVTFIGLLHACGHMGWVDE 99 (352)
Q Consensus 31 ~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~ 99 (352)
+++|.++++....+ ...+|..+...+...|++++|+..|++..+. +-.| ...++..+...+...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 34555555554422 2445666666666666666666666665432 1122 23355566666666666666
Q ss_pred HHHHHHHhHHhc-----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC--------CC-CcchHHHHHHHHHhcC
Q 048117 100 GRRFFYSMTTEY-----G-IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI--------KP-NGVVWGALLGGCRVHK 163 (352)
Q Consensus 100 a~~~~~~m~~~~-----g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--------~p-~~~~~~~li~~~~~~g 163 (352)
|.+.+....... . -+....++..+...|...|++++|...|++. .. .| ...++..+...|...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 666665555321 1 0112445556666666666666666666554 11 22 2334555566666666
Q ss_pred CHHHHHHHHHHHHh
Q 048117 164 NIDLAEEASRQLDQ 177 (352)
Q Consensus 164 ~~~~a~~~~~~~~~ 177 (352)
+.++|...+++..+
T Consensus 184 ~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 184 KYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665543
No 75
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=9.8e-08 Score=82.59 Aligned_cols=162 Identities=11% Similarity=0.017 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-----Chh
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK-PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-----QIE 118 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-----~~~ 118 (352)
+..++..+..++...|++++|++++.+-...|-. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~ 175 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNE 175 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchH
Confidence 3344445555555555555555555554433221 13334445555555555555555555555422 33 123
Q ss_pred hHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCc
Q 048117 119 HYGCMVDL--LSRAG--FLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL----------DPLNN 183 (352)
Q Consensus 119 ~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~~~~~ 183 (352)
+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+. .|.++
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 33333333 11122 555555555555 22233222333344555555555555555544432 24444
Q ss_pred chHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 184 GYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
.+...+|..+...|+ +|.++++++.+
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 444344444444444 45555555544
No 76
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=3.7e-07 Score=75.87 Aligned_cols=181 Identities=9% Similarity=-0.019 Sum_probs=111.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH----HHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE--RT----VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG----VTF 84 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~ 84 (352)
...+-.+...+.+.|++++|...|+.+.+ |+ ...+..+..++.+.|++++|+..|++..+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 34455556667778888888888887764 32 2467777778888888888888888877642 322 123
Q ss_pred HHHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 048117 85 IGLLHACGH------------------MGWVDEGRRFFYSMTTEYGIIPQI-EHYGCMVDLLSRAGFLQEAYEFIRNMPI 145 (352)
Q Consensus 85 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 145 (352)
..+..++.. .|+.++|...|+.+.+. .|+. ..+.++... +.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH--------
Confidence 333333332 34455555555555421 2221 111111100 0000000
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 146 KPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN---GYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 146 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
....-.+...|.+.|++++|...|+.+.+..|.++ ..+..+..+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112345668889999999999999999888765 34667889999999999999999988876543
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.89 E-value=3.1e-08 Score=89.32 Aligned_cols=196 Identities=10% Similarity=0.010 Sum_probs=149.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc-----C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcc
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE-----R-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKPN 80 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~ 80 (352)
..++..+-..|...|+++.|...|++..+ + ...+++.+...|...|++++|+..|++..+. +-.+.
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 46788899999999999999998887653 1 2468899999999999999999999998642 21121
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CC-C
Q 048117 81 -GVTFIGLLHACGHMGWVDEGRRFFYSMTTE---YGI-IPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI-----KP-N 148 (352)
Q Consensus 81 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p-~ 148 (352)
..++..+...|...|++++|.+.++....- .+. +....++..+...|.+.|++++|...+++. .. .| .
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 237888999999999999999999887741 133 223577889999999999999999999886 11 12 2
Q ss_pred cchHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 149 GVVWGALLGGCRVHKN---IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 149 ~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
...+..+-..+...|+ .++|..+++... ..|.....+..+...|.+.|++++|...|++..+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2335667777888888 667777766652 2222334666788999999999999999998765
No 78
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=8.5e-08 Score=82.97 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=112.7
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----cH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-----RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-----NG 81 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~ 81 (352)
.++..+...+...|...|++++|.+++.+... .+...+-.++..+.+.|+.+.|.+.+++|++. .| +.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d 174 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN 174 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence 35555556777788888888888888887633 24567777888888888888888888888763 56 35
Q ss_pred HHHHHHHHHHhc--cC--CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC----------C
Q 048117 82 VTFIGLLHACGH--MG--WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI----------K 146 (352)
Q Consensus 82 ~t~~~ll~a~~~--~g--~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~ 146 (352)
.+...+..++.. .| +.++|..+|+++..+ .|+..+-..|++++.+.|++++|.+.++.+ .. .
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 555566655322 23 788888888887643 344334445555777888888888888764 21 1
Q ss_pred C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 147 P-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 147 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
| |+.+...+|......|+ ++.++++++.+..|+.+
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 3 55556455555555666 77888888888888765
No 79
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=7.6e-08 Score=83.37 Aligned_cols=176 Identities=11% Similarity=0.001 Sum_probs=135.6
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048117 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110 (352)
Q Consensus 31 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 110 (352)
.+.....++.....+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++.....
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3344455555544456677788888899999999999999998752 235667888899999999999999999887732
Q ss_pred cCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cch
Q 048117 111 YGIIPQIEHYGCM-VDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN--NGY 185 (352)
Q Consensus 111 ~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 185 (352)
.|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|+.++|...+.++.+..|.. ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4554433322 23366777888888888776 3344 56778889999999999999999999999988876 677
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 186 HVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
+..|...|...|+.++|...|++-.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8899999999999999988887643
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.7e-08 Score=98.22 Aligned_cols=169 Identities=9% Similarity=-0.110 Sum_probs=140.7
Q ss_pred HHcCCHHHHHHHHHhcc--------c---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcc
Q 048117 26 VKCGCLEGARRVFIEME--------E---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~--------~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 94 (352)
...|++++|.+.|++.. + .+...|..+...+.+.|++++|+..|++..+.. +-+...+..+-.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999876 2 367889999999999999999999999998752 33567888888999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHH
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
|++++|.+.|+...+. . +.+...|..+...|.+.|++++ .+.|++. ...| +...|..+-.++.+.|+.++|...+
T Consensus 481 g~~~~A~~~~~~al~l-~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT-F-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH-S-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998843 1 2346788999999999999999 9999887 4445 5667999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHccC
Q 048117 173 RQLDQLDPLNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (352)
++..+..|.+...+..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999887788888787766554
No 81
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.82 E-value=1.9e-07 Score=88.13 Aligned_cols=194 Identities=9% Similarity=-0.024 Sum_probs=149.8
Q ss_pred hHHHHHHHHHHHc----CCH----HHHHHHHHhccc--C-CHHHHHHHHHHHHH-------cCCHH-------HHHHHHH
Q 048117 16 RVCNTLIDMYVKC----GCL----EGARRVFIEMEE--R-TVFTWSAMIQGLAI-------HGQAK-------EALTSFN 70 (352)
Q Consensus 16 ~~~~~li~~~~~~----g~~----~~A~~~f~~m~~--~-~~~~~~~li~~~~~-------~g~~~-------~A~~l~~ 70 (352)
..|...+..-... ++. ..|..+|++... | +...|......+.+ .|+.+ +|..+|+
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 4566655443332 232 366778887664 3 77889988888876 69887 8999999
Q ss_pred HHHHcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-h-hhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 048117 71 KMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-I-EHYGCMVDLLSRAGFLQEAYEFIRNM-PIK 146 (352)
Q Consensus 71 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 146 (352)
+..+. +.| +...+..+...+.+.|++++|..+|+.... +.|+ . ..|..++..+.+.|++++|.++|++. ...
T Consensus 311 ~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 311 RAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp HHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 98753 345 577888899999999999999999999984 3554 2 58999999999999999999999998 433
Q ss_pred CC-cchHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 147 PN-GVVWGALLG-GCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 147 p~-~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
|+ ...|..... .+...|+.++|..+|+...+..|+++..+..++..+.+.|+.++|..+|++....+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 43 222322221 23468999999999999999889888899999999999999999999999998764
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.79 E-value=2.8e-07 Score=82.90 Aligned_cols=196 Identities=10% Similarity=0.040 Sum_probs=125.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc-----C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE-----R-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKP- 79 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p- 79 (352)
..++..+-..|...|+++.|...+++..+ + ...+++.+...|...|++++|++.|++..+. +-.+
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 35677777778888888887777766542 1 1356777888888888888888888877542 1111
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CC--CC-Cc
Q 048117 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTE---YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM----PI--KP-NG 149 (352)
Q Consensus 80 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p-~~ 149 (352)
...++..+-.+|...|++++|.+.++....- .+.+....++..+...|.+.|++++|...+++. .. .| ..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1235667777788888888888888776631 122222566777778888888888888887775 11 11 12
Q ss_pred chHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 150 VVWGALLGGCRVHKN---IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 150 ~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
..+..+-..+...++ .++|...++... ..|.....+..+...|.+.|++++|.+.|++..+
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234444455666666 555655555421 1122223455677888888888888888877643
No 83
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.78 E-value=4.3e-07 Score=83.89 Aligned_cols=198 Identities=14% Similarity=0.042 Sum_probs=145.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE------------RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI----- 75 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 75 (352)
.....||.|-..|...|+.++|.+.|++..+ ...++|+.+...|...|++++|...|++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3467899999999999999999999987532 24689999999999999999999999987542
Q ss_pred C-CCc-cHHHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHhC-CCC
Q 048117 76 G-IKP-NGVTFIGLLHACGH--MGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDL---LSRAGFLQEAYEFIRNM-PIK 146 (352)
Q Consensus 76 g-~~p-~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m-~~~ 146 (352)
+ ..+ ...++...-.++.. .+++++|.+.|+..... .|+ ...+..+... +...++.++|++.+++. ...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 112 24456555545544 45789999999988842 454 4555555554 34567778888888776 444
Q ss_pred C-CcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 147 P-NGVVWGALLGGCRV----HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 147 p-~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
| +...+..+...+.. .++.++|.+.+++.....|.....+..+...|...|++++|...+++..+..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 5 34455555544443 4677889999999999999988889999999999999999999999987653
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.78 E-value=1.6e-07 Score=81.43 Aligned_cols=171 Identities=12% Similarity=-0.008 Sum_probs=133.6
Q ss_pred CHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcc-HHHHHHHHHHHhccCCHHHHHHHH
Q 048117 30 CLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKPN-GVTFIGLLHACGHMGWVDEGRRFF 104 (352)
Q Consensus 30 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 104 (352)
++++|...|+.. ...|...|++++|+..|.+..+. |-+++ ..+|+.+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888877765 56788899999999999988642 33333 468999999999999999999999
Q ss_pred HHhHHhc---CCCCC-hhhHHHHHHHHHhc-CCHHHHHHHHHhC-CCCCC-------cchHHHHHHHHHhcCCHHHHHHH
Q 048117 105 YSMTTEY---GIIPQ-IEHYGCMVDLLSRA-GFLQEAYEFIRNM-PIKPN-------GVVWGALLGGCRVHKNIDLAEEA 171 (352)
Q Consensus 105 ~~m~~~~---g~~~~-~~~~~~li~~~~~~-g~~~~A~~~~~~m-~~~p~-------~~~~~~li~~~~~~g~~~~a~~~ 171 (352)
+....-. |-.+. ..+++.+...|... |++++|...|++. .+.|+ ..+|+.+...+.+.|++++|...
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 8776421 11111 45788899999996 9999999999887 22221 34688889999999999999999
Q ss_pred HHHHHhcCCCCcc-------hHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 172 SRQLDQLDPLNNG-------YHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 172 ~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
+++..+..|.+.. .+..+..+|...|++++|...|++..+
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999987765443 356677788999999999999998764
No 85
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=8.5e-07 Score=72.53 Aligned_cols=91 Identities=12% Similarity=-0.059 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCH
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
+..+-..|.+.|++++|...|++...++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44555566667777777777777666666677777777777777777777777666542 23455566666666666666
Q ss_pred HHHHHHHHHhHH
Q 048117 98 DEGRRFFYSMTT 109 (352)
Q Consensus 98 ~~a~~~~~~m~~ 109 (352)
++|.+.++...+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666653
No 86
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.77 E-value=2.9e-07 Score=82.90 Aligned_cols=189 Identities=10% Similarity=-0.068 Sum_probs=142.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhccc-----C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC---Cc-cHHHHH
Q 048117 21 LIDMYVKCGCLEGARRVFIEMEE-----R----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI--GI---KP-NGVTFI 85 (352)
Q Consensus 21 li~~~~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~p-~~~t~~ 85 (352)
.-..+...|++++|...|++..+ + ...+|..+...|...|++++|+..|.+..+. .. .| ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556788999999999998754 2 3468999999999999999999999998642 11 12 234788
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CcchHH
Q 048117 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGFLQEAYEFIRNM-------PIKP-NGVVWG 153 (352)
Q Consensus 86 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~ 153 (352)
.+-..|...|++++|...++....-..-.++ ..++..+...|...|++++|.+.|++. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999887742111122 247888999999999999999988876 2213 345688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCcchHHHHHHHHHHccC---HHHHHHHHHHH
Q 048117 154 ALLGGCRVHKNIDLAEEASRQLDQL-----DPLNNGYHVVLSNIYAEAER---WEDVARVRKLM 209 (352)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m 209 (352)
.+...+...|+.++|...+++..+. .|.....+..+...|...|+ +++|..++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 8889999999999999999998763 22222234567788888998 66666666554
No 87
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=1.1e-07 Score=90.60 Aligned_cols=160 Identities=10% Similarity=-0.023 Sum_probs=122.2
Q ss_pred cCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 048117 28 CGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104 (352)
Q Consensus 28 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 104 (352)
.|++++|.+.|++..+. +...|..+...+.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999987642 67899999999999999999999999998752 335778889999999999999999999
Q ss_pred HHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 048117 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVH---KNIDLAEEASRQLDQLD 179 (352)
Q Consensus 105 ~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 179 (352)
++..+. -+.+...+..+...|.+.|++++|.+.|++. ...| +...|..+...+... |+.++|...+++..+..
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998853 2335788999999999999999999999987 3344 466788899999999 99999999999999988
Q ss_pred CCCcchHHHHH
Q 048117 180 PLNNGYHVVLS 190 (352)
Q Consensus 180 ~~~~~~~~~l~ 190 (352)
|.....+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 88777766554
No 88
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=1.3e-06 Score=71.83 Aligned_cols=174 Identities=10% Similarity=-0.060 Sum_probs=134.4
Q ss_pred HHHHHHHhccc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccC----CHHHHHHHHHHh
Q 048117 33 GARRVFIEMEE-RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG----WVDEGRRFFYSM 107 (352)
Q Consensus 33 ~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m 107 (352)
+|.+.|+...+ .++.++..+-..|...+++++|+..|++..+.| +...+..+-..|.. + +.++|.+.|+..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 45666666554 478888888888988999999999999988765 45566667677777 6 899999999888
Q ss_pred HHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHHh----cCCHHHHHHHHHHH
Q 048117 108 TTEYGIIPQIEHYGCMVDLLSR----AGFLQEAYEFIRNM-PIKPN---GVVWGALLGGCRV----HKNIDLAEEASRQL 175 (352)
Q Consensus 108 ~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~----~g~~~~a~~~~~~~ 175 (352)
.. .| +...+..|-..|.. .+++++|.++|++. ...|+ ...+..|-..|.. .++.++|...|++.
T Consensus 80 ~~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VE-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HH-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HH-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 64 23 56677788888876 78999999999988 33342 6788888888888 78899999999998
Q ss_pred HhcCCCCcchHHHHHHHHHHc-c-----CHHHHHHHHHHHHhcCCc
Q 048117 176 DQLDPLNNGYHVVLSNIYAEA-E-----RWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~~ 215 (352)
.+. +.++.....|..+|... | +.++|...|+...+.|..
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 776 44445677777777654 3 899999999998887753
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=2.1e-07 Score=88.55 Aligned_cols=127 Identities=9% Similarity=-0.046 Sum_probs=98.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
+...+..+-..|.+.|++++|.+.|++..+ .+...|..+...+...|++++|.+.|++..+.. +-+...+..+..+
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 100 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHA 100 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 467788888888888888888888887664 256788888888888888888888888887652 3346677888888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHhC
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA---GFLQEAYEFIRNM 143 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m 143 (352)
+.+.|++++|.+.++...+. .+.+...+..+...|.+. |+.++|.+.+++.
T Consensus 101 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88888888888888887743 123466778888888888 8888888888877
No 90
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.76 E-value=4.8e-06 Score=77.59 Aligned_cols=192 Identities=14% Similarity=-0.046 Sum_probs=112.4
Q ss_pred CHhHHHHHHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCccHHHH
Q 048117 14 NIRVCNTLIDMYVK----CGCLEGARRVFIEMEER-TVFTWSAMIQGLAI----HGQAKEALTSFNKMIEIGIKPNGVTF 84 (352)
Q Consensus 14 ~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 84 (352)
++..+..|-.+|.. .+++++|...|+...+. +..++..|...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444455555555 55566666666554433 44555555555554 556666666666665543 34444
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCcchHHHHH
Q 048117 85 IGLLHACGH----MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR----AGFLQEAYEFIRNMPIKPNGVVWGALL 156 (352)
Q Consensus 85 ~~ll~a~~~----~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li 156 (352)
..+-..|.. .++.++|.+.|+..... | +...+..|...|.. .+++++|.++|++.-...+...+..+-
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455555554 56666666666655532 2 34555566666654 566777777776652122444555555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc-----cCHHHHHHHHHHHHhcCC
Q 048117 157 GGCRV----HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA-----ERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 157 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~ 214 (352)
..|.. .++.++|...|++..+.+ ++.....|..+|... +++++|...|++..+.|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~ 327 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD 327 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC
Confidence 56655 677777777777765543 334555666677666 788888888887776653
No 91
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.75 E-value=8.5e-07 Score=89.88 Aligned_cols=179 Identities=14% Similarity=0.130 Sum_probs=120.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 93 (352)
+..+|..+-.++.+.|++++|.+.|.+. .|...|..++.++.+.|++++|++.|...++.. ++....+.+..+|++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 4677888888888889999998888654 677788888999999999999999888766543 333333347777777
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048117 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 173 (352)
.+++++...+ .. .++...|..+.+.|...|++++|..+|... ..|..+...+.+.|+++.|.+.++
T Consensus 1180 l~rleele~f----I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1180 TNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred hcCHHHHHHH----Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7776643332 21 233444555666666666666666666653 256666666666666666666665
Q ss_pred HHHhcCC-------------------------CCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 174 QLDQLDP-------------------------LNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 174 ~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
+.....+ .++..+..++..|.+.|.+++|..+++.-.
T Consensus 1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5432111 123345578889999999999999996654
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.75 E-value=1.6e-06 Score=77.48 Aligned_cols=195 Identities=13% Similarity=0.050 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc-----CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--cc-
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEE-----RTV----FTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIK--PN- 80 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p~- 80 (352)
+++.+-..|...|++++|...+++..+ .+. .+++.+...+...|++++|...+++..+. +.. |.
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 566777888899999999999987653 222 34677888899999999999999998642 222 33
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC-cchHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI-IP--QIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPN-GVVWG 153 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~-~~~~~ 153 (352)
..++..+...+...|++++|...+++......- .+ ...++..+...+...|++++|...+++. ...++ ...|.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 345667788889999999999999887743111 11 2356778888999999999999999876 11222 12333
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCc----chHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 154 A-----LLGGCRVHKNIDLAEEASRQLDQLDPLNN----GYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 154 ~-----li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
. .+..+...|+.++|...++......+.+. ..+..+...+...|++++|...++...+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 22347789999999999998876544321 1345677889999999999999988754
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.73 E-value=4.3e-07 Score=75.45 Aligned_cols=148 Identities=15% Similarity=0.048 Sum_probs=101.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc--CC-H---HHHHHHHHHHHH------------------cCCHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE--RT-V---FTWSAMIQGLAI------------------HGQAKEALTSFN 70 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~---~~~~~li~~~~~------------------~g~~~~A~~l~~ 70 (352)
...+..+...|.+.|++++|...|+...+ |+ . .++-.+..++.+ .|+.++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 35778888999999999999999998764 32 2 245555555544 578999999999
Q ss_pred HHHHcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 048117 71 KMIEIGIKPNGV-TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN 148 (352)
Q Consensus 71 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 148 (352)
+..+. -|+.. ...... +. ..+...+. .....+...|.+.|++++|...|+++ ...|+
T Consensus 121 ~~l~~--~P~~~~a~~a~~----~l------~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 121 KLVRG--YPNSQYTTDATK----RL------VFLKDRLA---------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHTT--CTTCTTHHHHHH----HH------HHHHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHH--CcCChhHHHHHH----HH------HHHHHHHH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 99874 45543 221111 00 01111111 12234567788999999999999887 33344
Q ss_pred c----chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 149 G----VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 149 ~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
. ..+..+..++.+.|+.++|...++.+....|.+.
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 3 4677888999999999999999998888777653
No 94
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.73 E-value=4e-06 Score=78.16 Aligned_cols=192 Identities=10% Similarity=-0.068 Sum_probs=136.0
Q ss_pred CHhHHHHHHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCccHHHH
Q 048117 14 NIRVCNTLIDMYVK----CGCLEGARRVFIEMEER-TVFTWSAMIQGLAI----HGQAKEALTSFNKMIEIGIKPNGVTF 84 (352)
Q Consensus 14 ~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 84 (352)
+...+..|-..|.. .++.++|.+.|+...+. +..++..|-..|.. .+++++|+..|++..+.| +...+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 150 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ 150 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45566667777777 77777777777766554 56677777777776 677888888888777654 34455
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCcchHHHHH
Q 048117 85 IGLLHACGH----MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR----AGFLQEAYEFIRNMPIKPNGVVWGALL 156 (352)
Q Consensus 85 ~~ll~a~~~----~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li 156 (352)
..+-..|.. .++.++|.+.|+..... | +...+..|...|.+ .++.++|.++|++.-...+...+..+-
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 226 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555556655 67788888888777642 2 56677777777777 788888888888762223556666777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC
Q 048117 157 GGCRV----HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE----AERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 157 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 214 (352)
..|.. .++.++|...+++..+.++ +.....|..+|.. .++.++|.+.|++..+.|.
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~ 290 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN 290 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77765 7788888888888766433 3456667777777 8899999999998877654
No 95
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.72 E-value=3.8e-06 Score=75.10 Aligned_cols=196 Identities=17% Similarity=0.074 Sum_probs=142.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhccc----------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--c--c
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEE----------R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK--P--N 80 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~ 80 (352)
.+++.+-..|...|++++|...|++..+ + ....+..+...+...|++++|...+++.....-. | .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 3466778889999999999999987653 1 1346677888899999999999999998753221 1 2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----c
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-----CMVDLLSRAGFLQEAYEFIRNM-PIKPN-----G 149 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~ 149 (352)
..++..+...+...|++++|...+++......-..+...+. .++..+...|++++|...+++. ...|. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 35677888889999999999999998874312111111222 2334577999999999999998 22221 1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----C-cchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDPL-----N-NGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
..+..+...+...|+.++|...++......+. . ...+..+..++...|+.++|...+++..+
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 24567778899999999999999987652211 1 12455677888999999999999988764
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=5.3e-07 Score=78.76 Aligned_cols=187 Identities=14% Similarity=0.050 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccC-----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcc--H
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEER-----T----VFTWSAMIQGLAIHGQAKEALTSFNKMIEI---GIKPN--G 81 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~--~ 81 (352)
..|+.....|...|++++|...|.+..+- + ..+|+.+...|.+.|++++|+..|++..+. .-.|. .
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36777888899999999999999876531 2 458899999999999999999999987542 11222 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---C----c
Q 048117 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEY---GIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP---N----G 149 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~----~ 149 (352)
.++..+-..|.. |++++|...++....-. +-.+ ...+++.+...|.+.|++++|...|++. .+.| + .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 578888888988 99999999998876421 1111 1467888999999999999999999887 2111 1 2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHHHHHHccCHHHHHHH
Q 048117 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-----HVVLSNIYAEAERWEDVARV 205 (352)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~ 205 (352)
..|..+...+...|+.++|...|++.. ..|..... ...++.+| ..|+.+.+.++
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 256666777888899999999999998 77754322 23455555 56777666553
No 97
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.69 E-value=5.6e-07 Score=83.15 Aligned_cols=198 Identities=11% Similarity=-0.044 Sum_probs=123.4
Q ss_pred CHhHHHHHHHHHHH----cCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHH
Q 048117 14 NIRVCNTLIDMYVK----CGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFI 85 (352)
Q Consensus 14 ~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 85 (352)
+..++..+...+.+ .|+.++|.+.|++... .+..+|..+...|...|++++|+..|++..+. .|+ ..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 44555555545544 3567788888886553 36788889999999999999999999998874 343 45565
Q ss_pred HHHHHHhcc-------------------CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 048117 86 GLLHACGHM-------------------GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI 145 (352)
Q Consensus 86 ~ll~a~~~~-------------------g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 145 (352)
.+..+|... +..+.|...++..... -+.+..++..+...|.+.|++++|.+.|++. ..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 555544322 2345667777666532 2334677888999999999999999999886 33
Q ss_pred CCCcch----HHHHHH-HHHhcCCHHHHHHHHHHHHhc------------------------CCCCcchHHHHHHHHHHc
Q 048117 146 KPNGVV----WGALLG-GCRVHKNIDLAEEASRQLDQL------------------------DPLNNGYHVVLSNIYAEA 196 (352)
Q Consensus 146 ~p~~~~----~~~li~-~~~~~g~~~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~ 196 (352)
.|+... +..+.. ...+.|+.++|...+.+..+. .|.++.++..|...|...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN 443 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 443322 222222 235678888888888766543 566677888899999999
Q ss_pred cCHHHHHHHHHHHHhcCCc
Q 048117 197 ERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 197 g~~~~a~~~~~~m~~~g~~ 215 (352)
|++++|.+.|++..+.+-.
T Consensus 444 g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 444 EKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHCC---------------
T ss_pred CCHHHHHHHHHHHHhcCCC
Confidence 9999999999988776543
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.69 E-value=1.6e-08 Score=78.55 Aligned_cols=136 Identities=7% Similarity=-0.059 Sum_probs=78.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 048117 58 IHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A 136 (352)
..|++++|+..|.+... ..|+ ...+..+-..|.+.|++++|.+.|+...+. -+-+..+|..+...|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 34556666666665433 2232 223445566666666666666666666532 122355666666667777777777
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHHcc
Q 048117 137 YEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEE-ASRQLDQLDPLNNGYHVVLSNIYAEAE 197 (352)
Q Consensus 137 ~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (352)
...|++. ...| +...|..+...|.+.|+.+++.+ ++++..+..|.++..+......+...|
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 7766665 3344 34556666666777776654443 346666677766666665555555444
No 99
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=9.7e-07 Score=72.19 Aligned_cols=131 Identities=12% Similarity=-0.064 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
...+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++..... .+.+...+..+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 345667778888999999999999877 4678889999999999999999999999998853 2445778999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-Cc----------------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 126 LLSRAGFLQEAYEFIRNM-PIKP-NG----------------VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m-~~~p-~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
.|.+.|++++|.+.|++. ...| +. ..|..+..++...|+.++|...++...+..|.+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999887 2222 22 678888899999999999999999999888764
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.67 E-value=1.5e-07 Score=75.04 Aligned_cols=152 Identities=11% Similarity=-0.037 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-Hhc
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA-CGH 93 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~ 93 (352)
...+...+.+.|++++|...|+...+ .+...|..+...+.+.|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44555666777777777777776653 25667777777777777777777777776543 2333222111101 111
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHHhcCCHHHH
Q 048117 94 MGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN---GVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~~g~~~~a 168 (352)
.+...++...++...+. .| +...+..+...|.+.|++++|...|++. ...|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11112234444444321 22 2344444555555555555555555444 22332 22444444445555555444
Q ss_pred HHHHHH
Q 048117 169 EEASRQ 174 (352)
Q Consensus 169 ~~~~~~ 174 (352)
...|++
T Consensus 164 ~~~y~~ 169 (176)
T 2r5s_A 164 ASKYRR 169 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.67 E-value=8.1e-07 Score=72.87 Aligned_cols=158 Identities=6% Similarity=-0.062 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEER---TVFTWSA----------------MIQGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
.....+.+.|++++|...|+...+. +...|.. +...+.+.|++++|+..|++..+.. +-+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 3445566788888888888877653 3345555 7777777888888888888777642 224
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCc--chHHHHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF--LQEAYEFIRNMPIKPNG--VVWGALL 156 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~p~~--~~~~~li 156 (352)
...+..+..++...|++++|...|+...+. -+.+...+..+...|...|. ...+...++... .|+. ..|...-
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 566777777777888888888888777742 12235667777777655543 334455555542 2222 2333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDPL 181 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~ 181 (352)
.++...|+.++|...|++..+..|.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4555667777788888777777765
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=5e-07 Score=71.93 Aligned_cols=159 Identities=9% Similarity=0.010 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHH
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~ 126 (352)
.+..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|...++..... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3455667788999999999999998653 34 5667888999999999999999999987743 3344333322212
Q ss_pred -HHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHHccCHHH
Q 048117 127 -LSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN--NGYHVVLSNIYAEAERWED 201 (352)
Q Consensus 127 -~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 201 (352)
+.+.+...+|...+++. ...| +...+..+...+...|+.++|...++++.+..|.. ...+..+...|...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22222333467777776 3445 46788899999999999999999999999988764 4578889999999999999
Q ss_pred HHHHHHHHHh
Q 048117 202 VARVRKLMRN 211 (352)
Q Consensus 202 a~~~~~~m~~ 211 (352)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=5.7e-06 Score=71.54 Aligned_cols=196 Identities=5% Similarity=-0.099 Sum_probs=136.7
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCccHH----
Q 048117 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFT---WSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGV---- 82 (352)
Q Consensus 11 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~---- 82 (352)
..|+..+...+...+.-.- ..+|..-...+... +...+..+...|++++|..++++..+.. ..|+..
T Consensus 42 ~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 4567666666666554211 22444333333333 3344778889999999999999987632 234422
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-------CC-CC-c
Q 048117 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGFLQEAYEFIRNMP-------IK-PN-G 149 (352)
Q Consensus 83 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~-p~-~ 149 (352)
.+..+...+...|++++|...++.......-.++ ..+++.+...|...|++++|...|++.- .. +. .
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3345777778888999999999998852122223 2368999999999999999999888761 11 21 2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcchHHHHHHHHHHccC-HHHHHHHHHHHHh
Q 048117 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDP------LNNGYHVVLSNIYAEAER-WEDVARVRKLMRN 211 (352)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~ 211 (352)
.+|..+...|.+.|++++|...+++..+..+ .....+..+..+|.+.|+ +++|.+.|++..+
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3788889999999999999999998876321 113567788889999995 6999998887653
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.60 E-value=5.8e-07 Score=77.75 Aligned_cols=162 Identities=8% Similarity=-0.092 Sum_probs=129.7
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHH-HH
Q 048117 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF-IG 86 (352)
Q Consensus 11 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ 86 (352)
++.+...+..+...+.+.|++++|...|+...+ | +...+..+...+.+.|++++|...|++.... .|+.... ..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 345566777888889999999999999998764 3 6789999999999999999999999998664 4554432 22
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHHhc
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN---GVVWGALLGGCRVH 162 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~~ 162 (352)
....+...++.++|.+.++..... -+.+...+..+...|...|++++|...|++. ...|+ ...+..+...+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 333466777888888888888743 2445788999999999999999999999998 33443 66899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 048117 163 KNIDLAEEASRQLD 176 (352)
Q Consensus 163 g~~~~a~~~~~~~~ 176 (352)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999988887754
No 105
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.60 E-value=3e-06 Score=76.09 Aligned_cols=186 Identities=10% Similarity=-0.075 Sum_probs=139.2
Q ss_pred HHHHHcCCHHHHHHHHHhccc-----C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCc-cHHHHHHH
Q 048117 23 DMYVKCGCLEGARRVFIEMEE-----R----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI----G-IKP-NGVTFIGL 87 (352)
Q Consensus 23 ~~~~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p-~~~t~~~l 87 (352)
..+...|++++|...|++..+ + ...+|..+...|...|++++|+..+.+..+. + ..+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345688999999999998753 2 2468889999999999999999999998642 1 122 24478888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhc---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCC-CcchHHHHH
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEY---GIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-P-----IKP-NGVVWGALL 156 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~---g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~p-~~~~~~~li 156 (352)
-.+|...|++++|.+.++....-. +..+ ...+++.|...|...|++++|.+.|++. . ..| ...++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 999999999999999998876421 2111 1357888999999999999999999887 1 233 355677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC-----CCcchHHHHHHHHHHccC---HHHHHHHHHH
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDP-----LNNGYHVVLSNIYAEAER---WEDVARVRKL 208 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 208 (352)
..+.+.|+.++|...+++..+..+ .....+..+...|...|+ +.+|...+++
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 899999999999999999887322 112234456667777788 6666666654
No 106
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=3e-06 Score=73.32 Aligned_cols=166 Identities=6% Similarity=-0.124 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-H----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CCCC-
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-G----VTFIGLLHACGHMGWVDEGRRFFYSMTTEYG--IIPQ- 116 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g--~~~~- 116 (352)
....+...+..+...|++++|++.+.+..+..-..+ . ..+..+...+...|++++|...++....... ..+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345666778889999999999999998876532211 1 2244456667888999999999988763211 1112
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----
Q 048117 117 -IEHYGCMVDLLSRAGFLQEAYEFIRNM----PIKPN-----GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL----- 181 (352)
Q Consensus 117 -~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----- 181 (352)
..+|+.+...|...|++++|...|++. ...|+ ..+|..+...|...|++++|...+++..+..+.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 458889999999999999999999876 11122 257888999999999999999999998753211
Q ss_pred -CcchHHHHHHHHHHccCHHHH-HHHHHHHH
Q 048117 182 -NNGYHVVLSNIYAEAERWEDV-ARVRKLMR 210 (352)
Q Consensus 182 -~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 210 (352)
....+..+...|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 134567788899999999999 77777654
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.57 E-value=1.8e-07 Score=91.00 Aligned_cols=152 Identities=11% Similarity=-0.069 Sum_probs=130.9
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHH
Q 048117 57 AIHGQAKEALTSFNKMI--------EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128 (352)
Q Consensus 57 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~ 128 (352)
...|++++|++.|++.. +. -+.+...+..+..++.+.|++++|.+.++...+. -+.+...|..+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 67899999999999997 32 2335567888889999999999999999998853 2335678999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHH
Q 048117 129 RAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVR 206 (352)
Q Consensus 129 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (352)
+.|++++|.+.|++. ...| +...|..+-.++.+.|++++ ...|++..+..|.+...+..+..+|.+.|++++|.+.|
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999997 4445 56778999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 048117 207 KLMRNL 212 (352)
Q Consensus 207 ~~m~~~ 212 (352)
++..+.
T Consensus 558 ~~al~l 563 (681)
T 2pzi_A 558 DEVPPT 563 (681)
T ss_dssp HTSCTT
T ss_pred Hhhccc
Confidence 877654
No 108
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.56 E-value=6.1e-06 Score=83.81 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
+..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.+....+ ..++....+.++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk---~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK---KARESYVETELI 1174 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcccccccHHHH
Confidence 5678999999999999999999999653 4677888999999999999999999986553 234544555699
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHH
Q 048117 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVAR 204 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (352)
.+|++.+++++...+.+ .|+...|..+-..|...|++++|..+|... ..|..+...|.+.|++++|.+
T Consensus 1175 faYAKl~rleele~fI~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHHhhcCHHHHHHHHh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 99999999997555542 356677888999999999999999999985 478889999999999999999
Q ss_pred HHHHH
Q 048117 205 VRKLM 209 (352)
Q Consensus 205 ~~~~m 209 (352)
.+++.
T Consensus 1243 aarKA 1247 (1630)
T 1xi4_A 1243 GARKA 1247 (1630)
T ss_pred HHHHh
Confidence 98866
No 109
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=1.5e-06 Score=63.82 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 048117 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCR 160 (352)
Q Consensus 83 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 160 (352)
.+..+...+...|++++|.+.++.+... .+.+..++..+...|.+.|++++|..+|+++ ...| +..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444444455555555555444422 1223344455555555555555555555554 1112 3445555556666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (352)
..|+.++|...++++.+..|.+......+...+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 666666666666666655555544444444433
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=7e-07 Score=69.33 Aligned_cols=101 Identities=11% Similarity=-0.049 Sum_probs=81.5
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 048117 113 IIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189 (352)
Q Consensus 113 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 189 (352)
+.|+ ...+..+...|.+.|++++|...|++. ...| +...|..+-.+|...|++++|...|++..+..|+++..+..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 456777778888888888888888887 3344 566788888888888999999999988888888888888888
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcC
Q 048117 190 SNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..+|.+.|++++|...|++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888999999998888887654
No 111
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.52 E-value=3.1e-06 Score=65.91 Aligned_cols=125 Identities=8% Similarity=-0.057 Sum_probs=80.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHh
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRV 161 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 161 (352)
+..+...+...|++++|...++..... .+.+..++..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444555555666666666666655532 1223556666666677777777777776665 2223 44567777777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHH--HHHHHHHHccCHHHHHHHHHHHH
Q 048117 162 HKNIDLAEEASRQLDQLDPLNNGYHV--VLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.|+.++|...+++..+..|.+...+. .+...+.+.|++++|.+.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888777776665553 33344677788888888877654
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.51 E-value=1.5e-07 Score=72.95 Aligned_cols=121 Identities=14% Similarity=0.015 Sum_probs=99.8
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCH
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 165 (352)
..+...|++++|.+.+.... ...|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+-..|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 45567788999998887765 33443 556778899999999999999999998 4455 567899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHH-HHHHHhc
Q 048117 166 DLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARV-RKLMRNL 212 (352)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 212 (352)
++|...|+...+..|.++..+..+...|.+.|++++|.+. +++..+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999876665 4666653
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=6.5e-07 Score=77.19 Aligned_cols=192 Identities=9% Similarity=-0.034 Sum_probs=133.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
+...+..+-..|.+.|++++|...|+...+ | +...|..+...+.+.|++++|+..|++..+.. +-+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 566788888999999999999999998763 3 78899999999999999999999999987642 3356788889999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAE 169 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~ 169 (352)
+...|++++|...++...+. .|+ ...+...+....+......... .......++... ...+..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i-~~~l~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESEL-HSYLTRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHH-HHHHHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHH-HHHHHHHH-HHHHHHHH
Confidence 99999999999999887742 121 1112222222222111111111 222232233333 33344443 68889999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHc-cCHHHHHHHHHHHHhc
Q 048117 170 EASRQLDQLDPLNNGYHVVLSNIYAEA-ERWEDVARVRKLMRNL 212 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 212 (352)
+.++...+..|.+......+...+.+. +.+++|.++|....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999888888887655555565666665 7789999999887653
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.51 E-value=3.2e-06 Score=69.24 Aligned_cols=161 Identities=11% Similarity=0.024 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHH----------------HHHHHhccCCHHHHHHHHHHhHHh
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIG----------------LLHACGHMGWVDEGRRFFYSMTTE 110 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~ 110 (352)
.+-.....+.+.|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...++...+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444556678899999999999999874 464 345666 888999999999999999998853
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCcchH
Q 048117 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNI--DLAEEASRQLDQLDPLNNGYH 186 (352)
Q Consensus 111 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~ 186 (352)
-+-+...+..+...|...|++++|...|++. ...| +...|..+-..|...|.. +.+...+.......|. ...+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 2335788999999999999999999999998 4455 456788887777665543 3445555444322211 1123
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 187 VVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..+..++...|++++|...|++..+..
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 334456677899999999999987643
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=1.5e-05 Score=65.34 Aligned_cols=163 Identities=12% Similarity=-0.075 Sum_probs=131.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC-CHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCccHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHG----QAKEALTSFNKMIEIGIKPNGVTFIGL 87 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~l 87 (352)
-++..+..|-..|...|++++|...|+...+. +..++..|-..|.. + ++++|+.+|++..+.| +...+..|
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 47888999999999999999999999988765 77888888888887 6 8999999999998765 55667777
Q ss_pred HHHHhc----cCCHHHHHHHHHHhHHhcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCcchHHHHHH
Q 048117 88 LHACGH----MGWVDEGRRFFYSMTTEYGII-PQIEHYGCMVDLLSR----AGFLQEAYEFIRNM-PIKPNGVVWGALLG 157 (352)
Q Consensus 88 l~a~~~----~g~~~~a~~~~~~m~~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~li~ 157 (352)
-..|.. .+++++|...|+.... .|.. .+...+..|-.+|.. .+++++|..+|++. ...++...+..|-.
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGM 170 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 777877 8899999999998873 2321 126788889999988 88999999999998 32245667777777
Q ss_pred HHHhc-C-----CHHHHHHHHHHHHhcCC
Q 048117 158 GCRVH-K-----NIDLAEEASRQLDQLDP 180 (352)
Q Consensus 158 ~~~~~-g-----~~~~a~~~~~~~~~~~~ 180 (352)
.|... | +.++|...++...+.+.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77643 3 89999999999877654
No 116
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.9e-06 Score=69.66 Aligned_cols=152 Identities=14% Similarity=0.004 Sum_probs=92.2
Q ss_pred HHcCCHHHHHH---HHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-cHHHHHHHHHHHhccCCH
Q 048117 26 VKCGCLEGARR---VFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE----IGIKP-NGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 26 ~~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~ 97 (352)
...|++++|.+ ++..-+.....+++.+...+...|++++|+..|++..+ .+..| ...++..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35688888888 55443333567788888888888888888888888754 22222 234566677777778888
Q ss_pred HHHHHHHHHhHHh---cCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhC----C-C-CCC--cchHHHHHHHHHhcCC
Q 048117 98 DEGRRFFYSMTTE---YGIIP--QIEHYGCMVDLLSRAGFLQEAYEFIRNM----P-I-KPN--GVVWGALLGGCRVHKN 164 (352)
Q Consensus 98 ~~a~~~~~~m~~~---~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-~-~p~--~~~~~~li~~~~~~g~ 164 (352)
++|...+++.... .+-.| ....+..+...|...|++++|...+++. . . .+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8887777766532 12111 1344666667777777777777776654 0 0 111 1224455556666666
Q ss_pred HHHHHHHHHHHHh
Q 048117 165 IDLAEEASRQLDQ 177 (352)
Q Consensus 165 ~~~a~~~~~~~~~ 177 (352)
.++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=1.2e-06 Score=76.39 Aligned_cols=162 Identities=8% Similarity=-0.008 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-Chh
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEY---GIIP-QIE 118 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~~-~~~ 118 (352)
.|+.....|...|++++|...|.+..+. |-.+. ..+|+.+...|...|++++|...++....-+ |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555677888999999999999988542 21112 3478889999999999999999998766321 2111 145
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------c
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-------NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN------G 184 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~ 184 (352)
+++.+...|.+ |++++|+..|++. .+.| ...+++.+...|.+.|++++|...+++..+..|... .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 77888888988 9999999999876 1111 145788888999999999999999999887433221 2
Q ss_pred hHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 185 YHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.+..+...+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44556677788899999999999887
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=4.1e-06 Score=72.43 Aligned_cols=160 Identities=8% Similarity=-0.006 Sum_probs=119.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccC---C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---Ccc--HHH
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEER---T------VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI---KPN--GVT 83 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t 83 (352)
+...+..+...|++++|.+.++...+. + ...+..+...+...|++++|+..|++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 345677788999999999999865431 1 12344566667788999999999999875321 122 448
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------Ccc
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-----IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-------NGV 150 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------~~~ 150 (352)
++.+...|...|++++|...++.........|+ ..+++.+...|.+.|++++|...+++. .+.+ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 889999999999999999999988732111222 258889999999999999999999876 1111 145
Q ss_pred hHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 048117 151 VWGALLGGCRVHKNIDLA-EEASRQLDQ 177 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a-~~~~~~~~~ 177 (352)
+|..+-..|...|+.++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788888899999999999 777777654
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.46 E-value=1.2e-06 Score=65.75 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (352)
.+..+...|.+.|++++|.+.|++. ...| +...|..+-.++.+.|++++|...+++..+..|.+...+..+..+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444444555555555555555444 2222 3344444555555555555555555555555555444555555555555
Q ss_pred cCHHHHHHHHHHHHh
Q 048117 197 ERWEDVARVRKLMRN 211 (352)
Q Consensus 197 g~~~~a~~~~~~m~~ 211 (352)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555443
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=2e-05 Score=68.07 Aligned_cols=157 Identities=8% Similarity=-0.041 Sum_probs=119.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC-----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cc----HHHHHH
Q 048117 21 LIDMYVKCGCLEGARRVFIEMEER-----T----VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK-PN----GVTFIG 86 (352)
Q Consensus 21 li~~~~~~g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 86 (352)
.+..+.+.|++++|..+++...+. + ...+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788999999999999987642 1 123445666777778999999999999874322 23 336899
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-cchHH
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEY----GIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-------PIKPN-GVVWG 153 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 153 (352)
+..+|...|++++|...++...... +..+. ..+|..+...|.+.|++++|...+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999887421 22222 347889999999999999999998876 11121 45788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHh
Q 048117 154 ALLGGCRVHKN-IDLAEEASRQLDQ 177 (352)
Q Consensus 154 ~li~~~~~~g~-~~~a~~~~~~~~~ 177 (352)
.+-.++.+.|+ .++|...+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999994 6999999988764
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=7e-06 Score=60.15 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34555566666666666666666665542 245556666666666666666666666665432 23445555566666
Q ss_pred hccCCHHHHHHHHHHhH
Q 048117 92 GHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~ 108 (352)
...|++++|...++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 66666666666666555
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=1.6e-06 Score=76.86 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 048117 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----------------IEHYGCMVDLLSRAGFLQEAYEFIRNM-P 144 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 144 (352)
..+..+-..+.+.|++++|...|+..... .|+ ...|..+...|.+.|++++|...+++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555556666666666666666665532 122 468888999999999999999999887 3
Q ss_pred CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHH-HHHHHHHH
Q 048117 145 IKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDV-ARVRKLMR 210 (352)
Q Consensus 145 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 210 (352)
..| +...|..+-.+|...|++++|...|++..+..|.+...+..+..++.+.|+.++| ...|+.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 5678888999999999999999999999999999888888999999999999988 44566553
No 123
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=3e-06 Score=62.78 Aligned_cols=114 Identities=12% Similarity=-0.002 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 048117 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCR 160 (352)
Q Consensus 83 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 160 (352)
.+..+...+...|++++|...++..... .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 3444444455555555555555554422 1223444555555555555555555555554 1122 3445555556666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (352)
..|+.++|...++...+..|.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 66666666666666666666555555555555555544
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=6.4e-06 Score=64.03 Aligned_cols=127 Identities=10% Similarity=-0.051 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~ 126 (352)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++..... .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 445555666666666666666666665431 224555556666666666666666666665532 12334556666666
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CcchHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 048117 127 LSRAGFLQEAYEFIRNM-PIKP-NGVVWGA--LLGGCRVHKNIDLAEEASRQLD 176 (352)
Q Consensus 127 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--li~~~~~~g~~~~a~~~~~~~~ 176 (352)
|.+.|++++|...|++. ...| +...+.. ....+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666666665 2222 2223322 2223555666666666666543
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.42 E-value=2.5e-06 Score=63.85 Aligned_cols=105 Identities=11% Similarity=-0.065 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 048117 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCR 160 (352)
Q Consensus 83 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 160 (352)
.+...-..+.+.|++++|.+.|+...+. -+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+-.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555666666666666666665532 1234556666666666777777776666665 3233 3456666777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVL 189 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 189 (352)
..|++++|...|+...+..|.+......|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 77777777777777777777665544443
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=3.8e-06 Score=62.57 Aligned_cols=95 Identities=7% Similarity=-0.035 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+. .+.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 4455555555555566666666555555431 123444555555555555555555555554421 1122334444444
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 048117 126 LLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m 143 (352)
.|.+.|++++|.+.|++.
T Consensus 93 ~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 444444444444444443
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=8.9e-07 Score=68.45 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (352)
...+..+...+.+.|++++|...|++. ...| +...|..+-.+|...|++++|...|++.....|.++..+..+..+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455666677777788888888777776 3333 55667777777788888888888888887777777777777777888
Q ss_pred HccCHHHHHHHHHHHHhc
Q 048117 195 EAERWEDVARVRKLMRNL 212 (352)
Q Consensus 195 ~~g~~~~a~~~~~~m~~~ 212 (352)
..|++++|.+.|+...+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888776653
No 128
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.40 E-value=3.7e-05 Score=70.91 Aligned_cols=191 Identities=10% Similarity=0.018 Sum_probs=140.9
Q ss_pred HhHHHHHHHHHHHcC----CHHHHHHHHHhcccCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCccHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCG----CLEGARRVFIEMEERTVFTWSAMIQGLAIHG---QAKEALTSFNKMIEIGIKPNGVTFIGL 87 (352)
Q Consensus 15 ~~~~~~li~~~~~~g----~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~l 87 (352)
+.....|-..|...+ +.+.|..+++.....+..++..|...|.+.| +.++|+..|++..+.|. ++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 445556666666666 4556666777777777778999999999999 89999999999988763 455554556
Q ss_pred HHHHhcc----CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048117 88 LHACGHM----GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL-L--SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160 (352)
Q Consensus 88 l~a~~~~----g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 160 (352)
-..|... ++.++|...|+... +-+...+..|... | ...+++++|.++|++.-..-+...+..|-..|.
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666555 78999999988765 3355667777776 4 468899999999988721225666777777666
Q ss_pred hcC-----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCc
Q 048117 161 VHK-----NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE----AERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 161 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 215 (352)
.| +.++|...|++.. +.++.....|..+|.. ..+.++|.+.|++..+.|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 55 8999999998876 6666677777777766 33899999999998887653
No 129
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.35 E-value=1.3e-05 Score=77.45 Aligned_cols=202 Identities=6% Similarity=-0.106 Sum_probs=149.3
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHH-HHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CC
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGAR-RVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG---------IK 78 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~-~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~ 78 (352)
+.+..+|-..+..+-+.|+.++|. ++|+.... | +...|-..+...-+.|++++|.++|+++.... -.
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 346677777888888889998896 99987654 3 56668888888889999999999999997631 01
Q ss_pred cc------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhC-C
Q 048117 79 PN------------GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG-FLQEAYEFIRNM-P 144 (352)
Q Consensus 79 p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~ 144 (352)
|+ ...|...+....+.|.++.|.++|....+.. ..+...+|...+..-.+.+ +.+.|.++|+.. .
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 32 3367778888888899999999999988531 1122334444433444554 589999999887 2
Q ss_pred CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 145 IKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL---NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 145 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
.-| +...|...+.-....|+.+.|..+|++..+..|+ ....+...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 499 ~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 499 YFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 122 4556778888888899999999999999886653 334566777777889999999999999987643
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=2.3e-05 Score=63.07 Aligned_cols=155 Identities=10% Similarity=-0.040 Sum_probs=111.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCC-ChhhHHHHHHHHHhcC
Q 048117 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE---YGIIP-QIEHYGCMVDLLSRAG 131 (352)
Q Consensus 56 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~g~~~-~~~~~~~li~~~~~~g 131 (352)
....|++++|.++++..... ......++..+...+...|++++|...+++...- .+..| ...++..+...|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35689999999955555331 2235668888999999999999999999887742 12222 2467888889999999
Q ss_pred CHHHHHHHHHhC-------CCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCc----chHHHHHHHHHHc
Q 048117 132 FLQEAYEFIRNM-------PIKP--NGVVWGALLGGCRVHKNIDLAEEASRQLDQL--DPLNN----GYHVVLSNIYAEA 196 (352)
Q Consensus 132 ~~~~A~~~~~~m-------~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~l~~~~~~~ 196 (352)
++++|.+.+++. +..| ....+..+-..+...|++++|...+++.... ...+. ..+..+...|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999988876 2111 1345777888899999999999999987652 11222 2245778889999
Q ss_pred cCHHHHHHHHHHHHh
Q 048117 197 ERWEDVARVRKLMRN 211 (352)
Q Consensus 197 g~~~~a~~~~~~m~~ 211 (352)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999987764
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=5.2e-06 Score=63.37 Aligned_cols=96 Identities=9% Similarity=-0.030 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (352)
...+..+...+.+.|++++|...|++. ...| +...|..+-.++.+.|++++|...++......|.++..+..+..+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344555666677777888887777776 3333 45567777777777888888888888877777777777777777788
Q ss_pred HccCHHHHHHHHHHHHhc
Q 048117 195 EAERWEDVARVRKLMRNL 212 (352)
Q Consensus 195 ~~g~~~~a~~~~~~m~~~ 212 (352)
..|++++|.+.|+...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888887776653
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.30 E-value=1e-05 Score=62.70 Aligned_cols=104 Identities=11% Similarity=-0.074 Sum_probs=79.6
Q ss_pred CCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHH
Q 048117 77 IKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWG 153 (352)
Q Consensus 77 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 153 (352)
+.|+ ...+..+-..+.+.|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. ...| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3454 335667777888888888888888888742 2335677888888888888999988888887 3344 566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 154 ALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
.+-.+|.+.|+.++|...|+...+..|++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 88888888899999999988888877764
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.30 E-value=1.8e-05 Score=58.80 Aligned_cols=117 Identities=9% Similarity=-0.080 Sum_probs=96.2
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
+.+...+..+...|.+.|++++|...|+...+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 45677889999999999999999999998764 367899999999999999999999999998753 34677888899
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g 131 (352)
.++.+.|++++|.+.++..... . +.+...+..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL-D-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-C-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHh-C-CCchHHHHHHHHHHHHhc
Confidence 9999999999999999988843 1 223556677777776655
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.27 E-value=2.7e-06 Score=67.41 Aligned_cols=117 Identities=8% Similarity=-0.012 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHH-HHhcCCH--HHH
Q 048117 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGG-CRVHKNI--DLA 168 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~-~~~~g~~--~~a 168 (352)
.|++++|...++..... -+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|+. ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444454444444421 1223344555555555555555555555544 1112 23344444444 4455555 555
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
...++...+..|.+...+..+...|...|++++|...|+...+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555443
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.27 E-value=6.1e-06 Score=59.30 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL--NNGYHVVLSNI 192 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 192 (352)
...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...+++..+..|. +...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345555666666666666666666665 2222 3445666666666777777777777776666666 55666666666
Q ss_pred HHHc-cCHHHHHHHHHHHHhcC
Q 048117 193 YAEA-ERWEDVARVRKLMRNLG 213 (352)
Q Consensus 193 ~~~~-g~~~~a~~~~~~m~~~g 213 (352)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 6777 77777777776665543
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.26 E-value=1.3e-05 Score=68.29 Aligned_cols=182 Identities=7% Similarity=-0.046 Sum_probs=135.5
Q ss_pred HcCCHHHHHHHHHhccc--C-CHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCccHH--------------
Q 048117 27 KCGCLEGARRVFIEMEE--R-TVFTWSAM-------IQGLAIHGQAKEALTSFNKMIEIGIKPNGV-------------- 82 (352)
Q Consensus 27 ~~g~~~~A~~~f~~m~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 82 (352)
..++...|.+.|.+.-+ | ....|+.+ ...+...++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 58999999999998875 3 56788888 5677777777777666665433 333221
Q ss_pred --------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCc----c
Q 048117 83 --------TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG----V 150 (352)
Q Consensus 83 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 150 (352)
........+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 223456678889999999999988873 2354436666777899999999999999877433322 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQLD--PL-NNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
.+..+-.++.+.|+.++|...|++..... |. ..........++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67778888999999999999999987532 33 22344566678899999999999999998753
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=2.1e-05 Score=58.00 Aligned_cols=114 Identities=10% Similarity=-0.028 Sum_probs=55.4
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
...+..+...+...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34445555555555555555555554432 244555555555555555555555555554431 22344444555555
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g 131 (352)
...|++++|...++..... . +.+...+..+...+.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL-D-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhc-C-ccchHHHHHHHHHHHHHh
Confidence 5555555555555554422 1 112334444444444444
No 138
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.24 E-value=0.00035 Score=64.31 Aligned_cols=192 Identities=11% Similarity=-0.004 Sum_probs=145.5
Q ss_pred CCCHhHHHHHHHHHHHcC---CHHHHHHHHHhcccC---CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCccH
Q 048117 12 RRNIRVCNTLIDMYVKCG---CLEGARRVFIEMEER---TVFTWSAMIQGLAIH----GQAKEALTSFNKMIEIGIKPNG 81 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g---~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~ 81 (352)
..++..+..|-.+|.+.| +.++|.+.|+...+. +...+..+...|... +++++|+.+|++.. .| +.
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~ 248 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YP 248 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---ST
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CH
Confidence 445558899999999999 999999999987653 445556677777554 68999999999987 43 33
Q ss_pred HHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCcchHH
Q 048117 82 VTFIGLLHA-C--GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG-----FLQEAYEFIRNMPIKPNGVVWG 153 (352)
Q Consensus 82 ~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~ 153 (352)
..+..+-.. + ...++.++|.+.|+.... .| +...+..|-.+|. .| ++++|.++|++.- .-+...+.
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~ 322 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADY 322 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHH
Confidence 444444444 3 468999999999998884 35 6677788888887 55 9999999999987 54666777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCc
Q 048117 154 ALLGGCRV----HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE----AERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 154 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 215 (352)
.|-..|.. ..+.++|...|++..+.+. +.....|..+|.. ..+.++|...|+.-.+.|..
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 77766665 3489999999999876543 3466677777764 45899999999998887753
No 139
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=4.7e-05 Score=69.24 Aligned_cols=190 Identities=7% Similarity=-0.111 Sum_probs=136.9
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCC--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcc
Q 048117 22 IDMYVKCGCLEGARRVFIEMEERT--------------------VFTWSAMIQGLAIHGQAKEALTSFNKMIEI-GIKPN 80 (352)
Q Consensus 22 i~~~~~~g~~~~A~~~f~~m~~~~--------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~ 80 (352)
...+.+.|++++|.+.|....+.+ ..++..+...|.+.|++++|.+.+.+.... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345678999999999999876421 135788999999999999999999998642 11222
Q ss_pred HH----HHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-----C--C
Q 048117 81 GV----TFIGLLHACGHMGWVDEGRRFFYSMTTE---YGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-----P--I 145 (352)
Q Consensus 81 ~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-----~--~ 145 (352)
.. +.+.+-..+...|..+.+..++...... .+..+. ..++..|...|...|++++|..++++. + .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2333334455678999999988776532 122333 467888999999999999999998876 1 1
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCc----chHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 146 KP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQL---DPLNN----GYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 146 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
+| ...+|..++..|...|++++|..+++..... .+.+. ..+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 2447888899999999999999999987652 22221 2344566677888999999888876643
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=1.3e-05 Score=61.20 Aligned_cols=100 Identities=10% Similarity=-0.058 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHh
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRV 161 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 161 (352)
+..+...+.+.|++++|...|+..... -+.+...|..+...|.+.|++++|...|++. ...| +...|..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 444445555666666666666655532 1223455556666666666666666666655 2222 34455566666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcch
Q 048117 162 HKNIDLAEEASRQLDQLDPLNNGY 185 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~ 185 (352)
.|++++|...++...+..|.++..
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred cCCHHHHHHHHHHHHHhCCCCcch
Confidence 666666666666666655554433
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.2e-05 Score=59.78 Aligned_cols=95 Identities=8% Similarity=-0.066 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 048117 118 EHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195 (352)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (352)
..+..+...+.+.|++++|...|++. ...| +...|..+..++.+.|++++|...+++..+..|.+...+..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666677777777777777665 2233 455677777777777777777777777777777777777777777777
Q ss_pred ccCHHHHHHHHHHHHhc
Q 048117 196 AERWEDVARVRKLMRNL 212 (352)
Q Consensus 196 ~g~~~~a~~~~~~m~~~ 212 (352)
.|++++|...|++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 77777777777776653
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=2.8e-05 Score=56.20 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~ 126 (352)
..|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++..... .+.+...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 344445555555555555555555554431 123344444444444555555555555444421 11123334444444
Q ss_pred HHhcCCHHHHHHHHHhC
Q 048117 127 LSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 127 ~~~~g~~~~A~~~~~~m 143 (352)
|.+.|++++|.+.+++.
T Consensus 82 ~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 44444444444444443
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=1.8e-05 Score=59.39 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=71.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048117 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193 (352)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (352)
+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++...+..|.+...+..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777777777777777777777765 2233 4556777777777888888888888887777777777777777788
Q ss_pred HHccCHHHHHHHHHHHHhc
Q 048117 194 AEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 194 ~~~g~~~~a~~~~~~m~~~ 212 (352)
...|++++|...|+...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888776653
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.21 E-value=1.3e-05 Score=63.39 Aligned_cols=123 Identities=11% Similarity=0.015 Sum_probs=70.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHH-HHhcCCH--H
Q 048117 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL-LSRAGFL--Q 134 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~-~~~~g~~--~ 134 (352)
..|++++|+..|++..+.. +.+...+..+...+...|++++|...++...... +.+...+..+... |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666665432 2344556666666666666666666666665321 2234555556655 5566666 7
Q ss_pred HHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 135 EAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 135 ~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
+|...|++. ...| +...|..+...+...|+.++|...++.+.+..|.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 777666665 2233 344566666667777777777777777766666554
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2.1e-05 Score=59.67 Aligned_cols=95 Identities=12% Similarity=-0.026 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN----GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 191 (352)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++...+..|.+...+..+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 445555555566666666666666555 33444 4455555566666666666666666666655655555555666
Q ss_pred HHHHccCHHHHHHHHHHHHh
Q 048117 192 IYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 192 ~~~~~g~~~~a~~~~~~m~~ 211 (352)
+|...|++++|.+.|++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.20 E-value=1.9e-05 Score=60.77 Aligned_cols=92 Identities=16% Similarity=0.044 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHH
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~ 127 (352)
.+..+...+.+.|++++|+..|++..... +.+...+..+-.++...|++++|...|+..... -+.+...+..+..+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHH
Confidence 33334444444444444444444443321 113333334444444444444444444444321 011233334444444
Q ss_pred HhcCCHHHHHHHHHh
Q 048117 128 SRAGFLQEAYEFIRN 142 (352)
Q Consensus 128 ~~~g~~~~A~~~~~~ 142 (352)
...|++++|.+.|++
T Consensus 100 ~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 100 LQXGELAEAESGLFL 114 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 444444444444433
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=1.1e-05 Score=63.14 Aligned_cols=94 Identities=10% Similarity=0.036 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 048117 118 EHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195 (352)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (352)
..+..+...|.+.|++++|.+.|++. ...| +...|..+..+|.+.|++++|...+++..+..|.+...+..+..+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445555555555555555555554 2222 344455555555566666666666666555555555555555555666
Q ss_pred ccCHHHHHHHHHHHHh
Q 048117 196 AERWEDVARVRKLMRN 211 (352)
Q Consensus 196 ~g~~~~a~~~~~~m~~ 211 (352)
.|++++|.+.|++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6666666666655544
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=1.8e-05 Score=57.24 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 048117 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGC 159 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 159 (352)
..+..+...+...|++++|...++..... .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555555555555555555432 1223444555555555555555555555544 1122 233445555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 160 RVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
...|+.++|...++...+..|.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 555555555555555555555443
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.18 E-value=2.1e-05 Score=69.47 Aligned_cols=128 Identities=8% Similarity=-0.105 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN----------------GVTFIGLLHACGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 108 (352)
+...|..+...+.+.|++++|+..|++..+.. |+ ...|..+..++.+.|++++|...++...
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999999999998753 43 4788899999999999999999999988
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048117 109 TEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLA-EEASRQLD 176 (352)
Q Consensus 109 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 176 (352)
.. -+.+...|..+..+|...|++++|...|++. ...| +...+..+...+.+.|+.+++ ...+..|.
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2345788999999999999999999999987 4445 456788888888888988887 44555543
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=2.7e-06 Score=68.89 Aligned_cols=176 Identities=9% Similarity=-0.018 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcc
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 94 (352)
.+..+......|++++|.+.|+.-.+. ....|..+...+...|++++|+..|++..+. .|+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~------- 77 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ------- 77 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH-------
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh-------
Confidence 344555566677788888777654432 4567888888889999999999999998763 2221100000
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHH
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
..+.- ...+ ....|..+...|.+.|++++|...+++. ...| +...|..+..++...|++++|...|
T Consensus 78 -~~~~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 78 -ILLDK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp -HHHHH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -hHHHH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00000 0000 1345666667777777777777777766 2233 4556777777788888888888888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHccCHHHHH-HHHHHHHhcCC
Q 048117 173 RQLDQLDPLNNGYHVVLSNIYAEAERWEDVA-RVRKLMRNLGV 214 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g~ 214 (352)
+...+..|.+...+..+..++...++.+++. ..|+.|-..+.
T Consensus 146 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888777877777777777777777777776 55666655443
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=2.3e-05 Score=63.33 Aligned_cols=122 Identities=8% Similarity=-0.093 Sum_probs=84.9
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------cch
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-N----------------GVV 151 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~----------------~~~ 151 (352)
.....|.++.+.+.++.-.. ........+..+...+.+.|++++|...|++. ...| + ...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444555555555432221 11113456666777777778888887777766 2222 1 267
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
|..+..+|...|++++|...++...+..|.+...+..+..+|...|++++|.+.|++..+..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 88888999999999999999999999999988899999999999999999999999887653
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.16 E-value=9.9e-06 Score=60.07 Aligned_cols=94 Identities=15% Similarity=-0.004 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (352)
.+..+...+.+.|++++|...|++. ...| +...|..+-.++...|+.++|...+++..+..|.+...+..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556667788899999999999887 3345 5667888888899999999999999999999998888888898999999
Q ss_pred cCHHHHHHHHHHHHhc
Q 048117 197 ERWEDVARVRKLMRNL 212 (352)
Q Consensus 197 g~~~~a~~~~~~m~~~ 212 (352)
|++++|...|++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999888754
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=4.1e-05 Score=58.05 Aligned_cols=95 Identities=12% Similarity=0.002 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN----GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 120 (352)
+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++..... .+.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 4455555555555556666666666555542 333 334444444455555555555555444421 11123334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 048117 121 GCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 121 ~~li~~~~~~g~~~~A~~~~~~m 143 (352)
..+...|.+.|++++|...|++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444444433
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=2.1e-05 Score=61.47 Aligned_cols=103 Identities=11% Similarity=-0.078 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGG 158 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 158 (352)
...+..+...+.+.|++++|...|+..... .+.+...|..+...|.+.|++++|...|++. ...| +...|..+-.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345555666666667777777666666632 1224566777777777777777777777766 3333 45567777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcch
Q 048117 159 CRVHKNIDLAEEASRQLDQLDPLNNGY 185 (352)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ 185 (352)
+...|++++|...|++..+..|.+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 888888888888888887777766553
No 155
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.14 E-value=6.2e-05 Score=72.66 Aligned_cols=186 Identities=8% Similarity=0.009 Sum_probs=138.9
Q ss_pred HhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc-------------CC------------HHHHHHHHHHHH
Q 048117 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-------------RT------------VFTWSAMIQGLA 57 (352)
Q Consensus 3 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------------~~------------~~~~~~li~~~~ 57 (352)
++..++. .+.+...|-..+...-+.|+++.|+++|+.+.+ |+ ...|-..+....
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 3444432 345677788899999999999999999998764 21 236888888888
Q ss_pred HcCCHHHHHHHHHHHHHc-C-CCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 048117 58 IHGQAKEALTSFNKMIEI-G-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~ 135 (352)
+.|..+.|..+|.+..+. + ..+......+.+.-. ..++.+.|..+|+...+.+ +-+...+...++.....|+.+.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHH
Confidence 899999999999999875 2 233333333334322 2356899999999998653 3355667888888889999999
Q ss_pred HHHHHHhC-CCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048117 136 AYEFIRNM-PIKP----NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193 (352)
Q Consensus 136 A~~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (352)
|..+|+.. ...| ....|...+.--.+.|+.+.+..+.+++.+..|++. ....+++-|
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99999997 3233 345799999999999999999999999999888764 334444444
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.3e-05 Score=58.12 Aligned_cols=91 Identities=11% Similarity=-0.089 Sum_probs=40.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKN 164 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~ 164 (352)
.-..+.+.|++++|...|+..... -+.+...|..+...|.+.|++++|...|++. ...| +...|..+..++...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 333444444444444444444321 1122344444444455555555555544444 2222 23344445555555555
Q ss_pred HHHHHHHHHHHHhcC
Q 048117 165 IDLAEEASRQLDQLD 179 (352)
Q Consensus 165 ~~~a~~~~~~~~~~~ 179 (352)
.++|...+++..+..
T Consensus 88 ~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 88 YASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 555555555554444
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.08 E-value=1.7e-05 Score=56.86 Aligned_cols=92 Identities=15% Similarity=-0.038 Sum_probs=40.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CcchHHHHHHHHHhc
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP---NGVVWGALLGGCRVH 162 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~li~~~~~~ 162 (352)
+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 333444444444444444444321 1122334444444444455555554444444 1122 233444444455555
Q ss_pred -CCHHHHHHHHHHHHhcCC
Q 048117 163 -KNIDLAEEASRQLDQLDP 180 (352)
Q Consensus 163 -g~~~~a~~~~~~~~~~~~ 180 (352)
|+.++|.+.+.......|
T Consensus 90 ~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp SSCSHHHHHHHHHHGGGCC
T ss_pred hCCHHHHHHHHHHHhhccc
Confidence 555555555555544444
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=3.8e-05 Score=56.91 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=51.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 048117 123 MVDLLSRAGFLQEAYEFIRNM-PIKPNG----VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN---NGYHVVLSNIYA 194 (352)
Q Consensus 123 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 194 (352)
+...+.+.|++++|...|++. ...|+. ..+..+..++...|++++|...++.+.+..|.+ +..+..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455566666666666555 222322 245555556666666666666666666655555 334555556666
Q ss_pred HccCHHHHHHHHHHHHhc
Q 048117 195 EAERWEDVARVRKLMRNL 212 (352)
Q Consensus 195 ~~g~~~~a~~~~~~m~~~ 212 (352)
..|++++|...|+...+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666543
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=2.9e-05 Score=58.03 Aligned_cols=96 Identities=9% Similarity=-0.013 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCC----hhhHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQ----IEHYG 121 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-g~~~~----~~~~~ 121 (352)
.+|..+...+.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.++....-. ...++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345555666666666666666666655431 2234455555566666666666666555554210 00011 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 048117 122 CMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 122 ~li~~~~~~g~~~~A~~~~~~m 143 (352)
.+...|...|++++|.+.|++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555443
No 160
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=7.6e-05 Score=57.12 Aligned_cols=126 Identities=10% Similarity=-0.009 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccC-----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcc-H
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEER-----T----VFTWSAMIQGLAIHGQAKEALTSFNKMIEI----GIKPN-G 81 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 81 (352)
.++..+-..|...|++++|...|++..+. + ..++..+...+...|++++|...|++..+. +-.+. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666666777777777777777665431 1 135666667777777777777777765431 11111 2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 048117 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEY---GIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIR 141 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 141 (352)
..+..+...+...|++++|.+.++...... +..+. ...+..+...|...|++++|.+.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 244455555556666666666555544210 10000 2234444444445555555544444
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=3.6e-05 Score=56.81 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 107 (352)
..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333334444444444444444443321 122333333333344444444444444333
No 162
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.05 E-value=0.00033 Score=60.78 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=136.5
Q ss_pred CHhHHHHHHHHHHHcC--CHHHHHHHHHhcccC---CHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCccH
Q 048117 14 NIRVCNTLIDMYVKCG--CLEGARRVFIEMEER---TVFTWSAMIQGL----AIH---GQAKEALTSFNKMIEIGIKPNG 81 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~~---~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~ 81 (352)
+..+|+.-=..+...| +++++.++++.+... +..+|+.--..+ ... +++++++++++++.+.. +-|.
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny 144 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNH 144 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCH
Confidence 3455666666666677 888888888877642 556677655554 444 67888888888887653 3366
Q ss_pred HHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-Ccch
Q 048117 82 VTFIGLLHACGHMGWVD--EGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF------LQEAYEFIRNM-PIKP-NGVV 151 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~p-~~~~ 151 (352)
..++.---.+.+.|..+ ++.+.++.+... . +-|-..|+--...+.+.|. ++++++.++++ ...| |...
T Consensus 145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~Sa 222 (306)
T 3dra_A 145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPST 222 (306)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccH
Confidence 67766666666777777 888888888843 2 3355667666666666666 78888888776 3344 6667
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 152 WGALLGGCRVHKNI-DLAEEASRQLDQLD---PLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 152 ~~~li~~~~~~g~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
|+-+-..+.+.|.. +....+...+...+ |..+.....+.+.|.+.|+.++|.++++.+.+
T Consensus 223 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 223 WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88877777777764 44555666665544 55666677888999999999999999999875
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.03 E-value=1.8e-05 Score=59.16 Aligned_cols=93 Identities=5% Similarity=-0.070 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHHH
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG-------YHVVL 189 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l 189 (352)
.+..|.+.|.+.|++++|++.|++. .+.| +...|+.+-.+|.+.|++++|...++...+..|.... .+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4455556666666666666666655 3333 3445666666666666666666666666554443221 33345
Q ss_pred HHHHHHccCHHHHHHHHHHHHh
Q 048117 190 SNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
..+|...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5556666677777776666544
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=2.4e-05 Score=57.80 Aligned_cols=108 Identities=5% Similarity=-0.105 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----C----cch
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP----N----GVV 151 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~----~~~ 151 (352)
...+..+...+...|++++|...++..... .+.+...+..+...|.+.|++++|...+++. ...| + ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345677788888999999999999988853 2445778888899999999999999999887 2212 2 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 191 (352)
|..+...+...|++++|...++...+..| +......+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 88888889999999999999999888776 3444444433
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=3.6e-05 Score=59.04 Aligned_cols=96 Identities=7% Similarity=0.096 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----h
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK-PN----GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----I 117 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----~ 117 (352)
.++..+...+...|++++|+..|++..+..-. ++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45667777777788888888888776532100 11 124555555666666666666666554421100011 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHh
Q 048117 118 EHYGCMVDLLSRAGFLQEAYEFIRN 142 (352)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~~~~~ 142 (352)
.++..+...|...|++++|.+.+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2344444444455555555444433
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.01 E-value=6.5e-05 Score=56.26 Aligned_cols=96 Identities=8% Similarity=-0.070 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++..... . +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-chhHHHHHHHH
Confidence 44455555555555555555555555554431 123344444455555555555555555544421 1 11233444444
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 048117 125 DLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m 143 (352)
..|...|++++|...|++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4444444444444444443
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=7.2e-05 Score=69.04 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (352)
...|..+..+|.+.|++++|+..+++. ...| +...|..+-.+|...|++++|...|++..+..|.+...+..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888888999999999999999887 3334 56678888999999999999999999999999988888889999999
Q ss_pred HccCHHHHHH-HHHHHH
Q 048117 195 EAERWEDVAR-VRKLMR 210 (352)
Q Consensus 195 ~~g~~~~a~~-~~~~m~ 210 (352)
+.++.+++.+ .++.|-
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999887764 455543
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.97 E-value=1.9e-05 Score=73.35 Aligned_cols=115 Identities=7% Similarity=-0.055 Sum_probs=56.3
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 168 (352)
+.+.|++++|.+.+++..+. -+.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..+|.+.|+.++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33445555555555554421 1122445555555555555555555555554 2223 334455555555556666666
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHH--HHHccCHHHHHHHHH
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNI--YAEAERWEDVARVRK 207 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 207 (352)
...+++..+..|.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666555555544444444333 555555665555554
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.95 E-value=6e-05 Score=64.25 Aligned_cols=135 Identities=10% Similarity=-0.104 Sum_probs=98.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hhhHHHHHHHH
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ--IEHYGCMVDLL 127 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~ 127 (352)
-.....+...|++++|.++|..+... .|+......+-..+.+.+++++|+..|+..... . .|. ...+..|-.++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34567778889999999999888764 365545555566788899999999998755421 1 111 23677788889
Q ss_pred HhcCCHHHHHHHHHhC--C-CCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 048117 128 SRAGFLQEAYEFIRNM--P-IKPN--GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189 (352)
Q Consensus 128 ~~~g~~~~A~~~~~~m--~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 189 (352)
.+.|++++|+..|++. + ..|. ...+...-.++.+.|+.++|...|+++....|. ......|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 9999999999999987 2 1142 235566677788999999999999999988887 5544444
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=0.00019 Score=66.52 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=96.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhcC--C---CCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-cchHH
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYG--I---IPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM---------PIKPN-GVVWG 153 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g--~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 153 (352)
.+...|++++|..++++...... + .|+ ..+++.|...|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999998877764321 1 222 467899999999999999999888776 23354 44688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchH---HHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 154 ALLGGCRVHKNIDLAEEASRQLDQ-----LDPLNNGYH---VVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.|-..|...|++++|+.++++... .+|+.+.+. ..|..++...+.+++|+.+|..+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 577665443 46777888999999999999999874
No 171
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.89 E-value=9.1e-05 Score=63.58 Aligned_cols=102 Identities=9% Similarity=-0.191 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 048117 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLG 157 (352)
Q Consensus 80 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 157 (352)
+...+..+...+.+.|++++|...++..... .+.+...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567777888889999999999999988843 2335778888899999999999999999886 5555 4567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 158 GCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
++...|++++|...++...+..|.+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccch
Confidence 89999999999999999887666543
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.88 E-value=0.00023 Score=52.50 Aligned_cols=93 Identities=14% Similarity=0.024 Sum_probs=50.9
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHH
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQI---EHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN----GVVWGALLGGCR 160 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~ 160 (352)
..+...|++++|...++...... +.+. ..+..+...|.+.|++++|...|++. ...|+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445556666666555555321 1111 34555555666666666666666555 22232 234555566666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCc
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
..|+.++|...++.+.+..|.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCh
Confidence 66777777777776666666544
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00026 Score=64.25 Aligned_cols=158 Identities=12% Similarity=-0.026 Sum_probs=114.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIGIKPN----------------GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~ 117 (352)
..+.+.|++++|++.|.+..+..-... ...+..+...|...|++++|.+++.......+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 446788999999999999986432211 1247788999999999999999998887533333332
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC--
Q 048117 118 ----EHYGCMVDLLSRAGFLQEAYEFIRNM-------PIKPN-GVVWGALLGGCRVHKNIDLAEEASRQLDQ--LDPL-- 181 (352)
Q Consensus 118 ----~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~-- 181 (352)
.+.+.+-..+...|+.++|.+++++. +..+. ..++..+...+...|++++|..+++.+.. ...+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22333434445678899998888765 22222 34677888999999999999999998765 1211
Q ss_pred --CcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 182 --NNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 182 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
....+..++..|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 224567788999999999999999987754
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=6.3e-05 Score=66.50 Aligned_cols=147 Identities=11% Similarity=-0.032 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 355777777888889999999999987763 355432 22233333332211 1 125667777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHHccCHHHH
Q 048117 126 LLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI-YAEAERWEDV 202 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 202 (352)
.|.+.|++++|+..+++. ...| +...|..+-.+|...|++++|...|++..+..|.+...+..|... ....+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766 3333 455677777777777888888887777777777666555555544 2345566677
Q ss_pred HHHHHHHHhc
Q 048117 203 ARVRKLMRNL 212 (352)
Q Consensus 203 ~~~~~~m~~~ 212 (352)
.+.|+.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777776543
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=0.00016 Score=64.66 Aligned_cols=136 Identities=11% Similarity=0.042 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVD 125 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~ 125 (352)
..|..+...+.+.|++++|+..|++..+. .|+.. .....++ .. ...| +..+|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~-------~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDAD-------GA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHH-------HG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHH-------HH---HHHHHHHHHHHHHHH
Confidence 45666677777777777777777776542 01100 0000111 10 1122 3567888889
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHH
Q 048117 126 LLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (352)
.|.+.|++++|++.+++. ...| +...|..+-.+|...|++++|...+++..+..|.+......+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5555 46678888899999999999999999999999988877778888888888777765
Q ss_pred H
Q 048117 204 R 204 (352)
Q Consensus 204 ~ 204 (352)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.77 E-value=3.2e-05 Score=56.71 Aligned_cols=87 Identities=10% Similarity=-0.029 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHH
Q 048117 94 MGWVDEGRRFFYSMTTEYG--IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAE 169 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~ 169 (352)
.|++++|...|+...+. + -+.+...+..+...|.+.|++++|...|++. ...| +...|..+..++.+.|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34445555555544421 1 0112334444444555555555555555444 1122 2334444444445555555555
Q ss_pred HHHHHHHhcCCC
Q 048117 170 EASRQLDQLDPL 181 (352)
Q Consensus 170 ~~~~~~~~~~~~ 181 (352)
..+++.....|.
T Consensus 82 ~~~~~al~~~p~ 93 (117)
T 3k9i_A 82 ELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhCCC
Confidence 555544444443
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.76 E-value=0.00025 Score=52.26 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKM 72 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m 72 (352)
..|..+..++...|++++|+..|++.
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333344444444444444333
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.76 E-value=4e-05 Score=56.17 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHHHcCC-Cc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 048117 59 HGQAKEALTSFNKMIEIGI-KP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136 (352)
Q Consensus 59 ~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A 136 (352)
.|++++|+..|++..+.+. .| +...+..+..++...|++++|...++...+. .+-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 3445555555555544320 12 2234445555555555555555555555422 112244455555555555555555
Q ss_pred HHHHHhC
Q 048117 137 YEFIRNM 143 (352)
Q Consensus 137 ~~~~~~m 143 (352)
...|++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.75 E-value=0.00043 Score=63.81 Aligned_cols=127 Identities=7% Similarity=-0.081 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN----------------GVTFIGLLHACGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 108 (352)
+...|..+...+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|...++...
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4567888999999999999999999999764 233 4788889999999999999999999988
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHH-HHHHH
Q 048117 109 TEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEE-ASRQL 175 (352)
Q Consensus 109 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~-~~~~~ 175 (352)
.. -+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+...+.+.++.+++.+ .+..|
T Consensus 345 ~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 345 GL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2335788999999999999999999999998 5566 55678888888888888876654 34443
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00011 Score=57.10 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=41.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
..|..+..+|.+.|++++|...++...+..|.+...+..+..+|...|++++|...|+...+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456666666666677777777776666666666666666666667777777777666666543
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.73 E-value=5.1e-05 Score=67.07 Aligned_cols=113 Identities=8% Similarity=-0.132 Sum_probs=85.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 048117 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162 (352)
Q Consensus 83 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~ 162 (352)
.+..+-..+.+.|++++|...|+..... .|+.. .+...|+.+++...+. ...|..+..+|.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 4556667777888888888888776632 23322 1223344444444332 23788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 163 KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 163 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
|++++|...++...+..|.+...+..+..+|...|++++|...|++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999987654
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=0.00017 Score=55.73 Aligned_cols=92 Identities=12% Similarity=-0.055 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------------cchHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 048117 120 YGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-------------GVVWGALLGGCRVHKNIDLAEEASRQLDQL------- 178 (352)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------- 178 (352)
+......+.+.|++++|...|++. .+.|+ ...|+.+-.++.+.|++++|...+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555666666666666555 22222 227888888888888888888888888887
Q ss_pred CCCCcchH----HHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 179 DPLNNGYH----VVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 179 ~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
.|++...| ...-.++...|++++|...|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88887788 8888889999999999999988765
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.70 E-value=0.00015 Score=67.32 Aligned_cols=118 Identities=11% Similarity=-0.001 Sum_probs=90.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCH
Q 048117 21 LIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 21 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
+-..|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33456678999999999997764 368899999999999999999999999998852 33567888899999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 048117 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDL--LSRAGFLQEAYEFIR 141 (352)
Q Consensus 98 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 141 (352)
++|.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999888531 2234455555555 788899999999998
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.61 E-value=0.0008 Score=60.15 Aligned_cols=119 Identities=8% Similarity=-0.049 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhccc----------------C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEE----------------R---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~----------------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 76 (352)
..+..+-..|.+.|++++|.+.|++..+ . +...|+.+..+|.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4477788889999999999999987654 1 34667777777777777777777777776532
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 048117 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137 (352)
Q Consensus 77 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 137 (352)
+-+...+..+..++...|++++|...++...+. .+.+...+..+...+.+.++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 224556666777777777777777777766632 1223455556666666666665554
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.56 E-value=0.0016 Score=50.37 Aligned_cols=119 Identities=18% Similarity=0.064 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
...|......+.+.|++++|+..|.+.... .|+ ........... ...+. +.+...|..+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~~----------~~~~~~~~~~~--~~~~~-----~~~~~~~~nla~ 71 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--LDT----------LILREKPGEPE--WVELD-----RKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHTSCTTSHH--HHHHH-----HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------hcccCCCCHHH--HHHHH-----HHHHHHHHHHHH
Confidence 345667777888888888888888877642 000 00000000000 00000 112345566666
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 126 LLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
+|.+.|++++|...+++. ...| +...|..+-.+|...|++++|...++...+..|.+.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 666666666666666655 2233 344566666666666677777666666666666554
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00016 Score=51.73 Aligned_cols=93 Identities=12% Similarity=0.006 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-------hh
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-------IE 118 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-------~~ 118 (352)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++... .+.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHHH
Confidence 3455666666666677777777776666541 2245556666666666777777777666665 22333 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHh
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRN 142 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~ 142 (352)
.+..+..++...|+.+.|.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 344444444444544444444433
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.46 E-value=0.0041 Score=54.68 Aligned_cols=195 Identities=15% Similarity=0.081 Sum_probs=122.2
Q ss_pred CHhHHHHHHHHHHHcC-CHHHHHHHHHhcccC---CHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCccHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCG-CLEGARRVFIEMEER---TVFTWSAMIQGLAIH-G-QAKEALTSFNKMIEIGIKPNGVTFIGL 87 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~l 87 (352)
+..+|+.--..+...| +++++.++++.+... +..+|+.--..+.+. + ++++++++++++.+.. +-|...++.-
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R 165 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYL 165 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3445665555556667 488888888877643 567777776666665 6 7788888888887643 2355566554
Q ss_pred HHHHhccCCHH--------HHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-Ccc
Q 048117 88 LHACGHMGWVD--------EGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF-------LQEAYEFIRNM-PIKP-NGV 150 (352)
Q Consensus 88 l~a~~~~g~~~--------~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m-~~~p-~~~ 150 (352)
.-.+.+.|..+ ++.+.++.+.+. -.-|...|+-....+.+.+. ++++++.+++. ...| |..
T Consensus 166 ~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 166 HWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 44444444444 777778877743 23356777777777777765 67788877776 3344 555
Q ss_pred hHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCcchHHHHHHHHHHccCHHHHHH
Q 048117 151 VWGALLGGCRVHKNI--------------------DLAEEASRQLDQLD------PLNNGYHVVLSNIYAEAERWEDVAR 204 (352)
Q Consensus 151 ~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (352)
.|+-+-..+.+.|.. .....+...+.... +..+.....|++.|...|+.++|.+
T Consensus 244 aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~ 323 (349)
T 3q7a_A 244 AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAK 323 (349)
T ss_dssp HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHH
Confidence 677665555555543 22223322222221 2333444578899999999999999
Q ss_pred HHHHHHh
Q 048117 205 VRKLMRN 211 (352)
Q Consensus 205 ~~~~m~~ 211 (352)
+++.+.+
T Consensus 324 ~~~~l~~ 330 (349)
T 3q7a_A 324 VFEKLSS 330 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00031 Score=50.23 Aligned_cols=86 Identities=13% Similarity=0.007 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN------NGYHVV 188 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~ 188 (352)
...+..+...+.+.|++++|.+.|++. ...| +...|..+-.++.+.|++++|...++...+..|.+ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445666666777777777777777665 2233 45566667777777777777777777777766665 333334
Q ss_pred HHHHHHHccCHHHH
Q 048117 189 LSNIYAEAERWEDV 202 (352)
Q Consensus 189 l~~~~~~~g~~~~a 202 (352)
+..++...|+.+.|
T Consensus 84 ~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 84 LELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhHhhh
Confidence 44444444444333
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.43 E-value=0.0015 Score=50.48 Aligned_cols=111 Identities=11% Similarity=0.005 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChhhHHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII-PQIEHYGCMVD 125 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~-~~~~~~~~li~ 125 (352)
..+......+.+.|++++|+..|++..+. .|+... . . +. ... .+...|+.+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~--~------~------a~----------~~~~~~a~a~~n~g~ 65 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPP--E------E------AF----------DHAGFDAFCHAGLAE 65 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCT--T------S------CC----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcc--h------h------hh----------hhccchHHHHHHHHH
Confidence 34555566667777777777777777653 222000 0 0 00 000 01124444455
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-------CCC-cchH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 126 LLSRAGFLQEAYEFIRNM-PI-------KPN-GVVW----GALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
++.+.|++++|+..+++. .+ .|+ ...| ...-.++...|++++|...|++..+..|.+.
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 555555555554444443 22 553 3356 6666677777777777777777776655443
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.43 E-value=0.00082 Score=45.95 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (352)
...+..+...|.+.|++++|...|++. ...| +...|..+...+.+.|+.++|...+++..+..|.+...+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666667777777777777777766 2223 45567777777788888888888888877777776666666655554
Q ss_pred H
Q 048117 195 E 195 (352)
Q Consensus 195 ~ 195 (352)
+
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 4
No 191
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.39 E-value=0.01 Score=51.33 Aligned_cols=183 Identities=10% Similarity=-0.083 Sum_probs=134.6
Q ss_pred HHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHH----hcc--
Q 048117 26 VKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHG--QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC----GHM-- 94 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----~~~-- 94 (352)
.+...-++|.++++.+.. | +...||.--..+...| .+++++++++.+....- -+...++.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccc
Confidence 334445689999998775 3 5678998888888888 99999999999987532 2333444333333 334
Q ss_pred -CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC-----
Q 048117 95 -GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ--EAYEFIRNM-PIKP-NGVVWGALLGGCRVHKN----- 164 (352)
Q Consensus 95 -g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~----- 164 (352)
++++++..+++.+... -+-+-.+|+--.-.+.+.|.++ ++++.++++ ...| |...|+.--..+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhh
Confidence 7899999999999853 3446677887777788888888 999999988 3333 66778876666666666
Q ss_pred -HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHH-HHHHHHHHHh
Q 048117 165 -IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWED-VARVRKLMRN 211 (352)
Q Consensus 165 -~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 211 (352)
++++.+.++.+....|.+...++-+-..+.+.|+... +..+..++.+
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 8899999999999999999999888888888887443 4445554443
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.37 E-value=0.0012 Score=47.69 Aligned_cols=76 Identities=14% Similarity=-0.004 Sum_probs=51.0
Q ss_pred HHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 136 AYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 136 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
|...|++. ...| +...|..+...+...|++++|...+++..+..|.....+..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444 3333 4456666667777777777777777777777777666777777777777777777777776654
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.0011 Score=46.74 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=51.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 148 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
+...|..+-..|.+.|++++|...|++..+..|.+...+..+..+|...|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567777788888888888888888888888877777888888888888888888888876643
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.31 E-value=0.00091 Score=62.01 Aligned_cols=120 Identities=10% Similarity=-0.080 Sum_probs=73.1
Q ss_pred HcCCHHHHHHHHHHHHHc---CCCc---c-HHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCC-CCC-hhhHHHHH
Q 048117 58 IHGQAKEALTSFNKMIEI---GIKP---N-GVTFIGLLHACGHMGWVDEGRRFFYSMTT----EYGI-IPQ-IEHYGCMV 124 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~---g~~p---~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~g~-~~~-~~~~~~li 124 (352)
..|++++|+.++++..+. -+.| + ..+++.|..+|...|++++|..++++... .+|- .|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 567777777777666431 1222 2 23567777777777777777776665542 1221 233 45677777
Q ss_pred HHHHhcCCHHHHHHHHHhC--------C-CCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 125 DLLSRAGFLQEAYEFIRNM--------P-IKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m--------~-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
..|...|++++|+.++++. | -.|++. +.+.+-.++...+..+.|+.++.++++
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888777777665 2 223322 344455566677777888888877764
No 195
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.25 E-value=0.019 Score=42.48 Aligned_cols=140 Identities=11% Similarity=-0.018 Sum_probs=102.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 048117 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136 (352)
Q Consensus 57 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A 136 (352)
.-.|..++..++..+.... .+..-||-+|--....-+=+...++++.+-+- -| ...||++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHHH
Confidence 3456777777777776653 34455666665555555666666666655421 12 2357777777
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 137 ~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
...+-.++ .+.......+......|..+...++...+....++.+.....+.++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77777776 357778889999999999999999999977766767778889999999999999999999999999985
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.24 E-value=0.03 Score=52.97 Aligned_cols=172 Identities=10% Similarity=-0.028 Sum_probs=132.7
Q ss_pred HcCC-HHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 048117 27 KCGC-LEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQ----------AKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92 (352)
Q Consensus 27 ~~g~-~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 92 (352)
+.|+ -++|.+.++.+.+ | +..+|+.--..+...|+ ++++++.++++.+.. +=+...|..---++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444 4678999998875 3 56788877777777777 899999999998753 235667887777888
Q ss_pred ccC--CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc-----
Q 048117 93 HMG--WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG-FLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVH----- 162 (352)
Q Consensus 93 ~~g--~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~----- 162 (352)
+.| +++++.+.++.+.+. -+-+-..|+--.-.+.+.| ..+++++.++++ ...| |...|+..-..+...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 888 779999999999953 2345778888777888888 899999999998 5555 566788776666553
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHH
Q 048117 163 ---------KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWED 201 (352)
Q Consensus 163 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (352)
+.++++.+.+.......|.+...|..+-..+.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999888777777666433
No 197
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.24 E-value=0.023 Score=49.55 Aligned_cols=196 Identities=9% Similarity=-0.003 Sum_probs=138.1
Q ss_pred HhHHHHHHHHH---HHcCCHH-HHHHHHHhcccC---CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCC
Q 048117 15 IRVCNTLIDMY---VKCGCLE-GARRVFIEMEER---TVFTWSAMIQGLAIHGQ----------AKEALTSFNKMIEIGI 77 (352)
Q Consensus 15 ~~~~~~li~~~---~~~g~~~-~A~~~f~~m~~~---~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~ 77 (352)
+..|..+++.+ .+.|.++ +|..+++.+... +..+||.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~- 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN- 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-
Confidence 34455554443 3566665 789999988754 45667754444433333 678999999998753
Q ss_pred CccHHHHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHhC-CCCC-CcchH
Q 048117 78 KPNGVTFIGLLHACGHMG--WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF-LQEAYEFIRNM-PIKP-NGVVW 152 (352)
Q Consensus 78 ~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m-~~~p-~~~~~ 152 (352)
+-+..+|+.---.+.+.| .++++..+++.+... -+-|-..|+--.-.+.+.|. ++++++.++++ ...| |...|
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 336667776666666677 489999999999853 24456777777777778888 58999998888 3344 56678
Q ss_pred HHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc-----------cCHHHHHHHHH
Q 048117 153 GALLGGCRVH--------------KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA-----------ERWEDVARVRK 207 (352)
Q Consensus 153 ~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~ 207 (352)
+..-..+... +.++++.+.+.......|.+...++-+-..+.+. +.++++.+.++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 7766655544 4578899999999999999998887665555555 56888999999
Q ss_pred HHHhcC
Q 048117 208 LMRNLG 213 (352)
Q Consensus 208 ~m~~~g 213 (352)
++.+..
T Consensus 263 elle~~ 268 (331)
T 3dss_A 263 ELQELE 268 (331)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 888654
No 198
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.18 E-value=0.058 Score=47.07 Aligned_cols=180 Identities=12% Similarity=0.066 Sum_probs=129.5
Q ss_pred HHHHHHHHHhccc---CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC-HHHHHHHH
Q 048117 31 LEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQ--AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW-VDEGRRFF 104 (352)
Q Consensus 31 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 104 (352)
++++..+++.+.. ++..+|+.-.-.+...|. +++++.+++++.+.. +-|...|+.---.+...|. .+++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6778888887764 477889988888888884 899999999998764 3467777776667777787 58999999
Q ss_pred HHhHHhcCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc------
Q 048117 105 YSMTTEYGIIPQIEHYGCMVDLLSRA--------------GFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVH------ 162 (352)
Q Consensus 105 ~~m~~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~------ 162 (352)
+.+... -+-|...|+-....+.+. +.++++++.+++. ...| |...|+-+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999853 244667787766666655 4578888888887 3345 566676554444444
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCcchHHHHHH---HHHHccCHHHHHHHHHHHHhcC
Q 048117 163 -----KNIDLAEEASRQLDQLDPLNNGYHVVLSN---IYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 163 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~g 213 (352)
+.++++.+.++++.+..|++.-.+..++. .....|..+++...+.++.+.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 45789999999999999987544333322 1224577788888999888754
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.18 E-value=0.0021 Score=45.31 Aligned_cols=59 Identities=17% Similarity=0.082 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMI 73 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 73 (352)
..++..+-..|.+.|++++|...|+...+ | +...|..+..+|...|++++|++.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555555555554432 1 33445555555555555555555555443
No 200
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.13 E-value=0.028 Score=49.39 Aligned_cols=178 Identities=11% Similarity=-0.035 Sum_probs=127.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcc
Q 048117 19 NTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHG-QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94 (352)
Q Consensus 19 ~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 94 (352)
+.+-....+.+.-++|.++++.+... +..+||.--..+...| .+++++++++.+.... +-+...++.--..+.+.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence 33333344455567899999988753 5678888888888888 5999999999998753 23555676665555555
Q ss_pred -C-CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHhC-CCCC-CcchHHHHHHHHHhc
Q 048117 95 -G-WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ--------EAYEFIRNM-PIKP-NGVVWGALLGGCRVH 162 (352)
Q Consensus 95 -g-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m-~~~p-~~~~~~~li~~~~~~ 162 (352)
+ +.+++.++++.+.. .-+-|-..|+--.-.+.+.|.++ ++++.++++ ...| |...|+---..+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 6 78899999998883 22345666665555555555555 888888887 3334 677788887777777
Q ss_pred CC-------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCH
Q 048117 163 KN-------IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERW 199 (352)
Q Consensus 163 g~-------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (352)
+. ++++.+.++......|.+...++-+-..+.+.|+-
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 75 68889999998999999998888776666666653
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.07 E-value=0.0047 Score=44.45 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 108 (352)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|+.++|...++...
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555556666666666666666666655432 2234455555555556666666666555554
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.02 E-value=0.0089 Score=40.50 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 108 (352)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444445555555555555555554331 1233344444555555555555555555444
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.89 E-value=0.0067 Score=45.64 Aligned_cols=110 Identities=13% Similarity=-0.045 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh----cCCHHH
Q 048117 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR----AGFLQE 135 (352)
Q Consensus 60 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~----~g~~~~ 135 (352)
+++++|++.|++..+.| .|+.. +-..|...+.+++|.+.|+...+. -+...+..|-.+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35667777777776665 23333 444555556666677766666532 244556666666665 566666
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 048117 136 AYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDLAEEASRQLDQL 178 (352)
Q Consensus 136 A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~ 178 (352)
|.++|++.-..-+...+..|-..|.. .++.++|...+++..+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 66666665111234445555555555 55566666665555443
No 204
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.87 E-value=0.03 Score=52.00 Aligned_cols=184 Identities=10% Similarity=-0.044 Sum_probs=92.9
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------C-Cc-
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RT-VFTWSAMIQGLAIHGQAKEALTSFNKMIEIG---------I-KP- 79 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~-~p- 79 (352)
.+..+|-..+..+.+.|+++.|+.+|+.... |+ ...|. .|+...+.++. ++.+.+.- . .+
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhccc
Confidence 3455666666666677777777777774432 21 11121 22221111111 22222110 0 01
Q ss_pred -cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CcchHHHH
Q 048117 80 -NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG-FLQEAYEFIRNM-PIKP-NGVVWGAL 155 (352)
Q Consensus 80 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~l 155 (352)
....|...+....+.+.++.|..+|+.. +..+ .+..+|......-.+.+ +.+.|..+|+.. ..-| +...|...
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y 360 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 1234555555555566677777777766 2211 23333432222222233 577777777665 1112 22345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 156 LGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
+.-....|+.+.|..+|+.+. .....+...++.-...|+.+.+.+++++..
T Consensus 361 id~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666777777777777752 223445555555566677777777776655
No 205
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.86 E-value=0.013 Score=57.61 Aligned_cols=154 Identities=13% Similarity=-0.011 Sum_probs=106.0
Q ss_pred HHHHcCCHHHHHH-HHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 048117 24 MYVKCGCLEGARR-VFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102 (352)
Q Consensus 24 ~~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 102 (352)
.....|++++|.+ ++..++. ......++..+.+.|.+++|+++.++-. . -.......|++++|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------~-----~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD-------Q-----KFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH-------H-----HHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc-------h-----heehhhhcCCHHHHHH
Confidence 3346899999988 6655441 2233788888899999999988774321 1 1233456799999998
Q ss_pred HHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 103 FFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 103 ~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
+.+.+ .+...|..|...+.+.|+++.|.+.|.+++ -|..+...+...|+.+...++.+.....+.
T Consensus 674 ~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~------d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 674 LLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH------DLESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT------CHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc------ChhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 75433 356799999999999999999999999886 244566666667777776666555544321
Q ss_pred cchHHHHHHHHHHccCHHHHHHHHHHH
Q 048117 183 NGYHVVLSNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 209 (352)
+.....+|.+.|++++|.+++.++
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 223334466677777777776654
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.81 E-value=0.0094 Score=54.28 Aligned_cols=84 Identities=10% Similarity=-0.073 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCC---C-hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-cchHHHHHH
Q 048117 94 MGWVDEGRRFFYSMTTEYG--IIP---Q-IEHYGCMVDLLSRAGFLQEAYEFIRNM---------PIKPN-GVVWGALLG 157 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g--~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~ 157 (352)
.|++++|..++++...... +-| + ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777776665543211 112 2 356667777777777777777666655 22343 334666777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 048117 158 GCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~ 177 (352)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777766543
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.012 Score=53.64 Aligned_cols=99 Identities=11% Similarity=-0.020 Sum_probs=66.2
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-cch
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEYG--IIPQ----IEHYGCMVDLLSRAGFLQEAYEFIRNM---------PIKPN-GVV 151 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~g--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 151 (352)
+..+.+.|++++|..+++....... +.|+ ..+++.|...|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4455567788888888777663211 1222 456778888888888888888777765 23343 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchH
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQLDQ-----LDPLNNGYH 186 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 186 (352)
++.|-..|...|++++|..++++..+ .+|+.+.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 77788888888888888888887654 566655433
No 208
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.80 E-value=0.023 Score=52.68 Aligned_cols=168 Identities=8% Similarity=-0.114 Sum_probs=110.3
Q ss_pred HHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048117 32 EGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 32 ~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 108 (352)
+.+..+|+.+.. | +...|-..+.-+.+.|+.++|..+|++.... |+...+.. +|+.....++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHH
Confidence 446677887664 2 5778888888888999999999999999886 54433222 22222111221 22232
Q ss_pred Hhc---C-----CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCC--cchHHHHHHHHH-hcCCHHHHHHHHHH
Q 048117 109 TEY---G-----IIP---QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN--GVVWGALLGGCR-VHKNIDLAEEASRQ 174 (352)
Q Consensus 109 ~~~---g-----~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~li~~~~-~~g~~~~a~~~~~~ 174 (352)
... . ..+ ...+|...+..+.+.+.++.|..+|++. ..|. ...|......-. ..++.+.|..+|+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 211 0 011 1245777777777788999999999998 3343 223322111112 23469999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHH
Q 048117 175 LDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 209 (352)
..+..|..+..+...++...+.|+.+.|+.+|+..
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98866776666667778888999999999999986
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.76 E-value=0.0049 Score=56.16 Aligned_cols=116 Identities=8% Similarity=0.044 Sum_probs=85.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C--------CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---ch
Q 048117 124 VDLLSRAGFLQEAYEFIRNM-P--------IKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQ-----LDPLNN---GY 185 (352)
Q Consensus 124 i~~~~~~g~~~~A~~~~~~m-~--------~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~ 185 (352)
+.-+.+.|++++|+.++++. . ..| ...+++.+...|...|++++|..++++... .+|..+ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566789999999998776 1 122 244788999999999999999999998764 455444 45
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhHHHHHHHHHHHHHHHH
Q 048117 186 HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMK 257 (352)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 257 (352)
++.|...|...|++++|+.++++..+.-.. .-+..||...+....+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999987652111 113367888887777666665554
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.62 E-value=0.026 Score=42.30 Aligned_cols=113 Identities=8% Similarity=-0.024 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHHH
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDLAEE 170 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~ 170 (352)
++.++|.+.|+...+. | .|+. . |-..|...+.+++|.++|++.-..-+...+..|-..|.. .++.++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999988843 5 3333 3 777777888899999999988223467788888888887 899999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCc
Q 048117 171 ASRQLDQLDPLNNGYHVVLSNIYAE----AERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 215 (352)
.|++..+.+ ++.....|..+|.. .+++++|.+.|++..+.|..
T Consensus 83 ~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999987753 35677788888988 89999999999999888764
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.58 E-value=0.0016 Score=50.12 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=58.9
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 048117 129 RAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKN----------IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196 (352)
Q Consensus 129 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (352)
|.+.+++|.+.++.. ...| +...|..+-.++...++ +++|...|++..+..|.....+..+-.+|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555555444 2222 33344444444444433 67999999999999999988999999999877
Q ss_pred c-----------CHHHHHHHHHHHHhcC
Q 048117 197 E-----------RWEDVARVRKLMRNLG 213 (352)
Q Consensus 197 g-----------~~~~a~~~~~~m~~~g 213 (352)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 4 8999999999988754
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.51 E-value=0.089 Score=49.70 Aligned_cols=148 Identities=11% Similarity=-0.064 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCCCChhhHHHHHHHHH
Q 048117 60 GQAKEALTSFNKMIEIGIKPNG-VTFIGLLHACGHMGW----------VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128 (352)
Q Consensus 60 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~ 128 (352)
...++|++.++++... .|+. ..|+.--.++...|+ ++++.+.++.+.+. -+-+..+|+.-.-.+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3467889999999874 4654 446655555555566 89999999999853 2345677887777888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc-------
Q 048117 129 RAG--FLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHK-NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA------- 196 (352)
Q Consensus 129 ~~g--~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 196 (352)
+.| +++++++.++++ ...| |...|+.---.+.+.| ..+++.+.++.+.+..|.+...|......+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999999 3333 6778888777788888 889999999999999999988888665555553
Q ss_pred -------cCHHHHHHHHHHHHh
Q 048117 197 -------ERWEDVARVRKLMRN 211 (352)
Q Consensus 197 -------g~~~~a~~~~~~m~~ 211 (352)
+.++++.+.+++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888887776654
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.49 E-value=0.0022 Score=49.39 Aligned_cols=73 Identities=21% Similarity=0.152 Sum_probs=42.9
Q ss_pred HHHHHHHHhC-CCCC-CcchHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHH
Q 048117 134 QEAYEFIRNM-PIKP-NGVVWGALLGGCRVH-----------KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200 (352)
Q Consensus 134 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (352)
++|...|++. .+.| +...|..+-.+|... |++++|...|++..+..|.+..+..++ . ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al-~------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL-E------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-H------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH-H------HHH
Confidence 3555555554 3333 233455555555544 589999999999999999875333332 2 334
Q ss_pred HHHHHHHHHHhcC
Q 048117 201 DVARVRKLMRNLG 213 (352)
Q Consensus 201 ~a~~~~~~m~~~g 213 (352)
+|.+++-++...+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 5555655555443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.45 E-value=0.069 Score=47.05 Aligned_cols=138 Identities=12% Similarity=-0.049 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHH--cCC---HHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhc---cC--CHHHHHH---HHHHhHH
Q 048117 44 RTVFTWSAMIQGLAI--HGQ---AKEALTSFNKMIEIGIKPN-GVTFIGLLHACGH---MG--WVDEGRR---FFYSMTT 109 (352)
Q Consensus 44 ~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~---~g--~~~~a~~---~~~~m~~ 109 (352)
.|..+|...+.+... .+. ..+|..+|++..+. .|+ ...+..+.-++.. .+ ....... -+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 367788888776543 233 57899999998874 565 3344433333321 00 1111111 1111110
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 110 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
....+.+..+|.++...+...|++++|...+++. ...|+...|..+-..+.-.|+.++|...+++...+.|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0122445677777776666678888888888877 4446666666666677788888888888888887777653
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.37 E-value=0.022 Score=39.57 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=51.4
Q ss_pred CcchHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 148 NGVVWGALLGGCRVHKN---IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 148 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
|...+..+-.++...++ .++|..++++..+..|.++.....+...+.+.|++++|...|+.+.+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45566666666654444 58888888888888888888888888888888888888888888877644
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.33 E-value=0.0069 Score=55.16 Aligned_cols=82 Identities=11% Similarity=-0.014 Sum_probs=65.6
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chHHHHHH
Q 048117 130 AGFLQEAYEFIRNM---------PIKPN-GVVWGALLGGCRVHKNIDLAEEASRQLDQ-----LDPLNN---GYHVVLSN 191 (352)
Q Consensus 130 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~~~~l~~ 191 (352)
.|++++|+.++++. +..|+ ..+++.|...|...|++++|..++++... .+|+.+ ..++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57889999888775 22343 35799999999999999999999998764 455544 45667889
Q ss_pred HHHHccCHHHHHHHHHHHHh
Q 048117 192 IYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 192 ~~~~~g~~~~a~~~~~~m~~ 211 (352)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.15 E-value=0.019 Score=39.74 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-Ccc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 048117 124 VDLLSRAGFLQEAYEFIRNM-PIKP-NGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185 (352)
Q Consensus 124 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 185 (352)
...+.+.|++++|.+.|++. ...| +.. .|..+-.++...|+.++|...|+...+..|.+...
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 34455666666666666665 2233 334 56666666666777777777777766666655443
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.34 Score=37.77 Aligned_cols=129 Identities=17% Similarity=0.121 Sum_probs=90.6
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 048117 23 DMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102 (352)
Q Consensus 23 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 102 (352)
+...++|+++.|.++-+.+ .+...|..|-......|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3446789999999988766 4678899999999999999999999988653 3445556667788777665
Q ss_pred HHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 103 FFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 103 ~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
+-+....+ | -++.-...+.-.|+++++.++|.+.+.-|. ..-.....|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 54433322 2 355555667778999999999988864331 222234467777888877665
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.04 E-value=0.025 Score=39.11 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=53.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 155 LLGGCRVHKNIDLAEEASRQLDQLDPLNNG-YHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
....+.+.|++++|...++...+..|.+.. .+..+..+|...|++++|.+.|++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445678899999999999999999998888 88899999999999999999999988764
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.40 E-value=0.52 Score=46.07 Aligned_cols=131 Identities=9% Similarity=-0.034 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCH
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
...++..+.+.|.++.|.++.+.-. .-.....+.|++++|+++.+.+ .+...|..+...+.+.|++
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~~--------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQD--------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCHH--------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCChHHheecCCCcc--------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCH
Confidence 3777788888888888887664221 1123345678888888876543 4567788888888888888
Q ss_pred HHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 98 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
+.|.+.|..+.. |..+...|...|+.+...++-+..... .-++....+|.+.|++++|.+++..+
T Consensus 698 ~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~---~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 698 KLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETT---GKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHc---CchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 888888876641 344455555555555444433332111 12334444455566666666665554
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.36 E-value=0.1 Score=36.70 Aligned_cols=70 Identities=13% Similarity=0.005 Sum_probs=50.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 048117 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNM-----P----IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185 (352)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 185 (352)
+..-+-.|...+.+.|+++.|..+|+.. + -.+....+..+..++.+.|+.+.|...++++.+..|.+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4445566777777788888887777665 1 01234567788888888999999999998888888877544
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.28 E-value=0.1 Score=36.00 Aligned_cols=67 Identities=9% Similarity=-0.003 Sum_probs=39.6
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048117 115 PQIEHYGCMVDLLSRAGF---LQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181 (352)
Q Consensus 115 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 181 (352)
.|...+..+..++...++ .++|..+|++. ...| ++..+..+-..+.+.|++++|...|+.+.+..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345555555555544333 56676666665 3334 3344555556667777777777777777666665
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.06 E-value=0.35 Score=42.59 Aligned_cols=142 Identities=10% Similarity=0.007 Sum_probs=94.4
Q ss_pred hCCCCCHhHHHHHHHHHHH--cCC---HHHHHHHHHhcccCC---HHHHHHHHHHHHH----cCC-HHHHHHHHHHHHH-
Q 048117 9 SGFRRNIRVCNTLIDMYVK--CGC---LEGARRVFIEMEERT---VFTWSAMIQGLAI----HGQ-AKEALTSFNKMIE- 74 (352)
Q Consensus 9 ~g~~~~~~~~~~li~~~~~--~g~---~~~A~~~f~~m~~~~---~~~~~~li~~~~~----~g~-~~~A~~l~~~m~~- 74 (352)
.+.+.|...|...+.+... .++ ..+|..+|++..+.| ...|..+.-+|.. .+. ......+-..+..
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3456678888888877643 333 578999999887543 3445443333321 111 1111111111111
Q ss_pred ---cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc
Q 048117 75 ---IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV 150 (352)
Q Consensus 75 ---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 150 (352)
...+.+..+|..+...+...|++++|...+++...- + |+...|..+-..+.-.|++++|.+.|++. ...|...
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 123567778887777777789999999999999954 4 78888888888999999999999999877 5567666
Q ss_pred hHH
Q 048117 151 VWG 153 (352)
Q Consensus 151 ~~~ 153 (352)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.67 E-value=0.3 Score=37.07 Aligned_cols=66 Identities=9% Similarity=-0.104 Sum_probs=37.5
Q ss_pred CCcchHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 147 PNGVVWGALLGGCRVHK---NIDLAEEASRQLDQLD-P-LNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 147 p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
++..+.-.+-.++.+++ +.+++..+++.+.+.. | ........|.-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34555555555666655 4446666666665544 3 22233344555566777777777777766653
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.28 E-value=0.45 Score=36.11 Aligned_cols=30 Identities=33% Similarity=0.217 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 154 ALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
.+--+|.+.|++++|.+.++.+.+..|.+.
T Consensus 76 ~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 76 YLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 334445566666666666666666666554
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.52 E-value=0.4 Score=33.55 Aligned_cols=61 Identities=7% Similarity=-0.160 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCccHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIG------IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 108 (352)
.+-.|...+.+.|++..|...|++..+.- -.+....+..+..++.+.|+++.|..+++...
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455566666666666666666654320 11233344455555555555555555555444
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.73 E-value=1.4 Score=42.85 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=80.1
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCChhh--HHHHHHHHHhcCC-HHHHHHHHHhC---------CCCCCcc-
Q 048117 85 IGLLHACGHMGW-VDEGRRFFYSMTTEYGIIPQIEH--YGCMVDLLSRAGF-LQEAYEFIRNM---------PIKPNGV- 150 (352)
Q Consensus 85 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~g~-~~~A~~~~~~m---------~~~p~~~- 150 (352)
..++..+...++ .+.|..+++.+..+ .|...+ ..+++..+.+.+. --+|.+++.+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 456666666666 58899999988854 343322 2344444444332 12343333222 1111111
Q ss_pred -----hH-HHHHH----HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 151 -----VW-GALLG----GCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 151 -----~~-~~li~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.+ ..|+. -|...|+++.|..+.++....-|.+..+|..|...|.+.|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 01 11222 25678999999999999999999999999999999999999999999999874
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.54 E-value=0.44 Score=40.39 Aligned_cols=83 Identities=12% Similarity=0.177 Sum_probs=67.0
Q ss_pred HHHHHHHHHhC-CCCCC---cchHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHc-cCHHH
Q 048117 133 LQEAYEFIRNM-PIKPN---GVVWGALLGGCRV-----HKNIDLAEEASRQLDQLDPLN-NGYHVVLSNIYAEA-ERWED 201 (352)
Q Consensus 133 ~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 201 (352)
...|...+++. .+.|+ ...|..+...|.+ -|+.++|.+.|++..++.|.. ..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555556555 45565 5578888888988 499999999999999999964 77888888888884 99999
Q ss_pred HHHHHHHHHhcCCc
Q 048117 202 VARVRKLMRNLGVK 215 (352)
Q Consensus 202 a~~~~~~m~~~g~~ 215 (352)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999887766
No 229
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.15 E-value=0.96 Score=31.42 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 61 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++++.++.+.|.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 445666667777777889999999999999999999999999999888654433 456777664
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.58 E-value=0.47 Score=42.37 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCccCCce
Q 048117 153 GALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN-----LGVKKTPGW 220 (352)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 220 (352)
..++..+...|+.+++...+..+....|-+...+..|+.+|.+.|+..+|.+.|+..++ .|+.|.+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 35667788899999999999999999998888999999999999999999999988754 588886543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.56 E-value=0.75 Score=39.00 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhHHhcCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHhC-CCCCC--cchHHHHHHHHHhc-CC
Q 048117 97 VDEGRRFFYSMTTEYGIIPQ---IEHYGCMVDLLSRA-----GFLQEAYEFIRNM-PIKPN--GVVWGALLGGCRVH-KN 164 (352)
Q Consensus 97 ~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~p~--~~~~~~li~~~~~~-g~ 164 (352)
...|...+++.. .+.|+ ...|..|...|.+. |+.++|.+.|++. .+.|+ ..++......+++. |+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345555555554 45676 56899999999995 9999999999998 56663 66777778888885 99
Q ss_pred HHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 165 IDLAEEASRQLDQLDPLN-NGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.+++.+.+++..+..|.. +. ..+. ..+.-.+|..++.+..
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKLL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHHH----HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhHH----HHHHHHHHHHHHHHhH
Confidence 999999999999866542 21 1222 2334456666665543
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.12 E-value=1.4 Score=39.25 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=49.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCcch
Q 048117 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM--------PIKPNGVV 151 (352)
Q Consensus 85 ~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~ 151 (352)
..++.++...|+.+++...+..+... -+.+...|..||.+|.++|+..+|++.|+.. ++.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34667777888888888888777742 3446778888999999999988888877665 78886655
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.85 E-value=4.7 Score=31.32 Aligned_cols=100 Identities=6% Similarity=-0.100 Sum_probs=60.5
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~ 170 (352)
..+.|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|.+.+ -|..+.-.|...|+.+...+
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH------SFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHHHHHHHHHHhCCHHHHHH
Confidence 34567888887776544 245678888888888888888888888775 23445555566677666555
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 171 ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
+.+.....+- ++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444333221 12222334456677776666643
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.91 E-value=1.7 Score=31.68 Aligned_cols=27 Identities=33% Similarity=0.234 Sum_probs=14.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
-++.+.|++++|.+.++.+.+..|.+.
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 344555555555555555555555443
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.74 E-value=9.3 Score=33.03 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCccHHHHHHHHHHHh
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF----NKMIEIGIKPNGVTFIGLLHACG 92 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~ 92 (352)
.|.++..=|.+.+++++|.+++-. -...+.+.|+...|.++- +-..+.++++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455556666666666666655422 133456678877666665 44457889999998888888887
Q ss_pred ccCCHH-HHHHHHHHhHH---hcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 048117 93 HMGWVD-EGRRFFYSMTT---EYG--IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166 (352)
Q Consensus 93 ~~g~~~-~a~~~~~~m~~---~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~ 166 (352)
....-+ .=..+.+.+.+ +.| -.-|......+...|.+.+++.+|..-|= .+..+++..+..++--+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 765421 11223333331 223 33467778888899999999999998883 3544444666555554444332
Q ss_pred HHHHHHHHHHhcCCCCcchH-HHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 167 LAEEASRQLDQLDPLNNGYH-VVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
|.....+ .-.+--|.-.+++..|..+|+.+.+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2111122 2233446778899999998877664
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.01 E-value=3.8 Score=29.86 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=63.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHH---HHHHHHHhHHhcCCCC--ChhhHHHHHHH
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDE---GRRFFYSMTTEYGIIP--QIEHYGCMVDL 126 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~g~~~--~~~~~~~li~~ 126 (352)
++..-........+.+-|.+....|. |+..|--.+.-++.++....+ |..++++..+. + .| .....-.|.-+
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHH
Confidence 33444444455566667776666554 666665566677888877665 88999888843 2 23 23334456668
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCc
Q 048117 127 LSRAGFLQEAYEFIRNM-PIKPNG 149 (352)
Q Consensus 127 ~~~~g~~~~A~~~~~~m-~~~p~~ 149 (352)
+.|.|++++|++.++.+ .++|+.
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhhHHHHHHHHHHHHHhCCCC
Confidence 89999999999999988 556654
No 237
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.06 E-value=2.9 Score=30.77 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 62 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++.+.| +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 445556666666777889999999999999999999999999988876544 33556776654
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.12 E-value=3.7 Score=39.91 Aligned_cols=124 Identities=12% Similarity=0.038 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHhcccCCH--HH--HHHHHHHHHHcC-CHHHHHHHHHHHHHc------CCCccHH---
Q 048117 18 CNTLIDMYVKCGC-LEGARRVFIEMEERTV--FT--WSAMIQGLAIHG-QAKEALTSFNKMIEI------GIKPNGV--- 82 (352)
Q Consensus 18 ~~~li~~~~~~g~-~~~A~~~f~~m~~~~~--~~--~~~li~~~~~~g-~~~~A~~l~~~m~~~------g~~p~~~--- 82 (352)
-.+|+..+...|+ .+.|..+|+++.+.+. .. ..++|..+.+.+ +--+|+++..+..+. ...+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555666 5789999998876543 22 223333333333 233566666665421 1222111
Q ss_pred --------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 048117 83 --------TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNMP 144 (352)
Q Consensus 83 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 144 (352)
....=.+.|...|+++.|+++-+..+ ...|+ -.+|..|...|.+.|+++.|+-.+..+|
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111344567899999999998877 33455 6899999999999999999999999986
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.64 E-value=14 Score=31.54 Aligned_cols=143 Identities=9% Similarity=0.019 Sum_probs=84.5
Q ss_pred HHHHHcCCHHHHHHH----HHHHHHcCCCccHHHHHHHHHHHhccCCHH-HHHHHHHHhHH---hcC--CCCChhhHHHH
Q 048117 54 QGLAIHGQAKEALTS----FNKMIEIGIKPNGVTFIGLLHACGHMGWVD-EGRRFFYSMTT---EYG--IIPQIEHYGCM 123 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~~~~~~m~~---~~g--~~~~~~~~~~l 123 (352)
..+.++|+...|.++ .+-..+.++++|..+..-++..+.....-+ .=.++.+.+.+ +.| -..++.....+
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 345567887776665 344456788899888888887776643211 11233333332 112 22467778888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHH
Q 048117 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH---KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200 (352)
Q Consensus 124 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (352)
...|.+.|++.+|..-|- .+..-|...+..++--+... |...++-.+. .-.+--|.-.|+..
T Consensus 141 a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~RaVL~yL~l~n~~ 205 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRLVFNYLFISNIS 205 (312)
T ss_dssp HHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHHHHHHHHTTBHH
T ss_pred HHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHHHHHHHHhcCHH
Confidence 888999999999988775 33211345555555544443 4444332221 11223356778999
Q ss_pred HHHHHHHHHHh
Q 048117 201 DVARVRKLMRN 211 (352)
Q Consensus 201 ~a~~~~~~m~~ 211 (352)
.|..+|+...+
T Consensus 206 ~A~~~~~~f~~ 216 (312)
T 2wpv_A 206 FAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.16 E-value=18 Score=32.13 Aligned_cols=159 Identities=11% Similarity=-0.036 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhccc--------CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCccHHHH--
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEE--------RTVFTWSAMIQGLAIH-GQAKEALTSFNKMIEIGIKPNGVTF-- 84 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~-- 84 (352)
.....|...|.+.|+.++..+++..... +....-..||..+... +..+.-.++..+..+.. +-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4556788899999999999999987763 2455677788888764 44555666666665421 1122233
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCcch
Q 048117 85 ----IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGFLQEAYEFIRNM-----PIKPNGVV 151 (352)
Q Consensus 85 ----~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~ 151 (352)
.-+...|...|++.+|.+++..+.++..-..| ..+|..-+.+|...+++.++...+... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25788899999999999999988865433222 456777888899999999998888766 12122222
Q ss_pred HHHHHHH-----HH-hcCCHHHHHHHHHHHH
Q 048117 152 WGALLGG-----CR-VHKNIDLAEEASRQLD 176 (352)
Q Consensus 152 ~~~li~~-----~~-~~g~~~~a~~~~~~~~ 176 (352)
.+.+.. +. ..+++..|...|-+..
T Consensus 179 -~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 -QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp -HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 222322 34 6788888877776653
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.23 E-value=4.4 Score=30.57 Aligned_cols=54 Identities=7% Similarity=-0.069 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Q 048117 163 KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216 (352)
Q Consensus 163 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 216 (352)
+++++|.++|+.+.+....-...+.....--.+.|++..|.+++..-...+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 566677777777665422223344444455567777777777777777665543
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.15 E-value=21 Score=32.18 Aligned_cols=183 Identities=11% Similarity=0.090 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHhccc-----C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCccHHHH--HHHHHHHhccCC
Q 048117 29 GCLEGARRVFIEMEE-----R----TVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTF--IGLLHACGHMGW 96 (352)
Q Consensus 29 g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~--~~ll~a~~~~g~ 96 (352)
|+++.|.+.+-.+.+ . .......++..|.+.|+++...+.+.-+. ..|..+..++. ..++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 667788777665543 1 34567789999999999999888877664 44555544432 223333333333
Q ss_pred HHH--HHHHHHHhHH--hcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---CCC-----cchHHHHHHHHHh
Q 048117 97 VDE--GRRFFYSMTT--EYGIIP---QIEHYGCMVDLLSRAGFLQEAYEFIRNMPI---KPN-----GVVWGALLGGCRV 161 (352)
Q Consensus 97 ~~~--a~~~~~~m~~--~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~-----~~~~~~li~~~~~ 161 (352)
.+. -..+.+.... +..+-. .......|...|-..|++.+|.+++.++.+ ..+ ...|..-+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332 2222221110 001111 123346788899999999999999998721 111 3456677788999
Q ss_pred cCCHHHHHHHHHHHHh---cCCCCc----chHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 162 HKNIDLAEEASRQLDQ---LDPLNN----GYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
.+++..|..+...+.. ..+.++ .++...+..+...+++.+|-+.|.+.-+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999998753 222222 3455677777888888888877776643
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.74 E-value=4.3 Score=28.19 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=32.7
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 048117 144 PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190 (352)
Q Consensus 144 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 190 (352)
..-|++....+.+.+|.+.+++..|.++++-++....+....|..++
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 55678888888888888888888888888887753332234455443
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.08 E-value=10 Score=28.62 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 048117 131 GFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185 (352)
Q Consensus 131 g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 185 (352)
+++++|.++|+.+ ..+- ...|-....--.+.|++..|.+++.......|.+...
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 5556666666555 1111 3445455555566777777777777777766655433
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.82 E-value=14 Score=27.47 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=89.6
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHhcccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcc
Q 048117 18 CNTLIDMY--VKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94 (352)
Q Consensus 18 ~~~li~~~--~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 94 (352)
...|+++= .-.|.+++..++..+...+ +..-||=.|.-....-+-+-.+++++..=. -.| ....
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C 74 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKC 74 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhh
Confidence 34455442 3468888888888877654 555666666666666666666665555421 111 1233
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh-C-CCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRN-M-PIKPNGVVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
|.+......+-.+ | .+......-++.+...|+-|.-.++..+ + ..+|++...-.+..+|.+.|+..++.+++
T Consensus 75 ~NlKrVi~C~~~~----n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVIN----N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHT----T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHh----c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 4444444333211 1 2345566667778888888888888888 3 44567777778888888888888888888
Q ss_pred HHHHhcCC
Q 048117 173 RQLDQLDP 180 (352)
Q Consensus 173 ~~~~~~~~ 180 (352)
.+.-+.+.
T Consensus 149 ~~AC~kG~ 156 (172)
T 1wy6_A 149 IEACKKGE 156 (172)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhh
Confidence 87765443
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.47 E-value=12 Score=28.55 Aligned_cols=125 Identities=9% Similarity=0.008 Sum_probs=63.3
Q ss_pred HhCCCCCHhHHH--HHHHHHHHcCCHHHHHHHHHhccc-----CCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048117 8 QSGFRRNIRVCN--TLIDMYVKCGCLEGARRVFIEMEE-----RTV-------FTWSAMIQGLAIHGQAKEALTSFNKMI 73 (352)
Q Consensus 8 ~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~f~~m~~-----~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~ 73 (352)
.+|+.|....|+ .-+..+...|.++.|+-+.+.+.. +++ .+...+.+++...|++..|...|++..
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 356666554444 447777788888888877776442 332 255667778888888888888888864
Q ss_pred Hc-CCCccHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 048117 74 EI-GIKPNGV-TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146 (352)
Q Consensus 74 ~~-g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 146 (352)
+. ..-|... +.+++- ....... .....++...---+..+|.+.+++++|+.+++.++.+
T Consensus 91 q~~k~l~k~~s~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 91 QQKKALSKTSKVRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHhcCCCcccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 21 1112111 111110 0000000 0012233444445667778888888888888887544
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.44 E-value=19 Score=36.89 Aligned_cols=192 Identities=8% Similarity=-0.014 Sum_probs=114.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------------------
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP------------------ 79 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------------------ 79 (352)
...++..+.+.|..+-|.++....+ .+..+--.+..++...|++++|.+.|.+.- .|+.+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccc
Confidence 3356666777788877777665554 344444456667888999999999997752 11111
Q ss_pred -----cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCcc
Q 048117 80 -----NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ---IEHYGCMVDLLSRAGFLQEAYEFIRNMPIK-PNGV 150 (352)
Q Consensus 80 -----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~ 150 (352)
-..=|..++..+-+.+.++.+.++-....+..+-.++ ...|..+...+...|++++|...+-.++-. --..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 1122667788888888888888776655533221111 225788888888999999998888776311 1234
Q ss_pred hHHHHHHHHHhcCCHHHH------------HHHHHH-HHhc-CCCC-cchHHHHHHHHHHccCHHHHHHH-HHHHHh
Q 048117 151 VWGALLGGCRVHKNIDLA------------EEASRQ-LDQL-DPLN-NGYHVVLSNIYAEAERWEDVARV-RKLMRN 211 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a------------~~~~~~-~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 211 (352)
....++..++..|..+.- ..++.. .++. .+.. +.+|..|=..+...|++..|-.+ |+...+
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 566677777766665443 222222 1111 2222 23555555555677777655443 555443
No 248
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=78.00 E-value=5.6 Score=33.31 Aligned_cols=187 Identities=6% Similarity=-0.050 Sum_probs=101.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHhccC
Q 048117 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV---TFIGLLHACGHMG 95 (352)
Q Consensus 19 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g 95 (352)
.+.+...++.|+.+-+..+++.=...+...-.+.+...+..|+.+-+ +.+.+.|..|+.. -.+. +...+..|
T Consensus 32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g 106 (285)
T 3kea_A 32 HSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTA-LYYAVDSG 106 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcH-HHHHHHcC
Confidence 34556667789999888888864433222123344455567776543 4444556665532 2223 33445667
Q ss_pred CHHHHHHHHHHhHHhcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048117 96 WVDEGRRFFYSMTTEYGIIPQIE---HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
+.+-+..+++. |..++.. -+.+.+...+..|+.+-+..+++.-....+...-.+.+...+..|+.+-+..++
T Consensus 107 ~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 107 NMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp CHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 77665555442 5544432 223445555677888776666655432223323445555667789988888777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCc
Q 048117 173 RQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPG 219 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 219 (352)
+.-......+..-.+..+..-+..|..+ +.+.+.+.|..++..
T Consensus 182 ~~gad~n~~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 182 DYMTSTNTNNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTCTTCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTT
T ss_pred HcCCCCCcccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCC
Confidence 7644322222111112123334566654 455566778776554
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.48 E-value=15 Score=25.39 Aligned_cols=48 Identities=10% Similarity=-0.037 Sum_probs=21.4
Q ss_pred HHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048117 26 VKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 75 (352)
...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..+
T Consensus 50 mNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 34444555544444444445544444322 2344444444444444333
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.72 E-value=43 Score=30.18 Aligned_cols=152 Identities=9% Similarity=0.082 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHH-----cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhh--HHHHHHHHHhcCC
Q 048117 60 GQAKEALTSFNKMIE-----IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH--YGCMVDLLSRAGF 132 (352)
Q Consensus 60 g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~g~ 132 (352)
|++++|++.+..+.+ ............++..|...|+++...+.+..+.++.|..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 668888888877653 234456777889999999999999998888877765565443322 2333344444444
Q ss_pred HH--HHHHHHHhC-CCCCC--------cchHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCc----chHHHHHHHHHH
Q 048117 133 LQ--EAYEFIRNM-PIKPN--------GVVWGALLGGCRVHKNIDLAEEASRQLDQ--LDPLNN----GYHVVLSNIYAE 195 (352)
Q Consensus 133 ~~--~A~~~~~~m-~~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~----~~~~~l~~~~~~ 195 (352)
.+ .-..+.+.. .+..+ ......|...+-..|++.+|..++..+.. .+..+. ..+..-+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 33 334455544 11111 11234677889999999999999999864 333222 345567788999
Q ss_pred ccCHHHHHHHHHHHHh
Q 048117 196 AERWEDVARVRKLMRN 211 (352)
Q Consensus 196 ~g~~~~a~~~~~~m~~ 211 (352)
.+++..|..+.++...
T Consensus 190 ~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 190 KGDYSQATVLSRKILK 205 (445)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988753
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.53 E-value=16 Score=25.28 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=19.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 048117 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107 (352)
Q Consensus 57 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 107 (352)
...|++++|..+.+.+ ..||...+..|- -.+.|..+.+..-+.++
T Consensus 51 mNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 51 MNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLNRL 95 (116)
T ss_dssp HHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHHHH
T ss_pred HcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 3445555555444433 245555543332 22444444444444333
No 252
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=76.22 E-value=2.9 Score=33.48 Aligned_cols=197 Identities=7% Similarity=-0.018 Sum_probs=88.1
Q ss_pred HhHHHHhCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHhcccCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048117 3 HEYSNQSGFRRNIR--VCNTLIDMYVKCGCLEGARRVFIEMEERT----VFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76 (352)
Q Consensus 3 ~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 76 (352)
...+.+.|..++.. ...+.+...++.|+++-+..+++.-...+ ...++. +...+..|+.+ +++.+.+.|
T Consensus 25 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~~----~v~~Ll~~g 99 (240)
T 3eu9_A 25 CRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQGHLS----MVVQLMKYG 99 (240)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH-HHHHHHHTCHH----HHHHHHHTT
T ss_pred HHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh-hHHHHHcCCHH----HHHHHHHcC
Confidence 44556666554332 23345566667777777777776544321 112222 33334455543 333344455
Q ss_pred CCccHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcc
Q 048117 77 IKPNGV---TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI---EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150 (352)
Q Consensus 77 ~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 150 (352)
..|+.. ..+ .+...+..|+.+-+..+++ .|..++. .-.+.|..+ +..+...+..+++.+.+..++..
T Consensus 100 ~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~~L~~~~~~~~~~ 172 (240)
T 3eu9_A 100 ADPSLIDGEGCS-CIHLAAQFGHTSIVAYLIA-----KGQDVDMMDQNGMTPLMWA-AYRTHSVDPTRLLLTFNVSVNLG 172 (240)
T ss_dssp CCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHH-HHHCCSSTTHHHHHHTTCCTTCC
T ss_pred CCCcccCCCCCC-HHHHHHHcCHHHHHHHHHh-----cCCCccccCCCCCcHHHHH-HHhCChHHHHHHHHhcCCCcchh
Confidence 554432 112 2333344566654444332 2444332 222333333 33344444555555554333322
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 151 ---VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 151 ---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.-.+.+...+..|+.+-+..+++.-......+..-. .-+....+.|+.+-+..+++...+.
T Consensus 173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC---
T ss_pred hccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 112344555667777766555544211111111111 1223445677777666665554443
No 253
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=75.29 E-value=16 Score=26.55 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcc
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQ--AKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 80 (352)
..+.++.-|...|+.++|.+.++++..| ..+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567889999999999999999998766 23455555556555432 4567888888877765443
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.81 E-value=58 Score=30.80 Aligned_cols=114 Identities=11% Similarity=-0.043 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcC-CCccHHH--HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 048117 61 QAKEALTSFNKMIEIG-IKPNGVT--FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137 (352)
Q Consensus 61 ~~~~A~~l~~~m~~~g-~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 137 (352)
+++.|..+|....... ..+.... ...+.......+...++...+...... .++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 5566666666664332 2222111 112222233333233444444443321 122222223333334557777777
Q ss_pred HHHHhCCCCC-Ccch-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 138 EFIRNMPIKP-NGVV-WGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 138 ~~~~~m~~~p-~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
..|+.|+..+ +..- .--+-.++...|+.++|..+|..+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777774332 1111 12233455566777777777766653
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.72 E-value=45 Score=29.50 Aligned_cols=162 Identities=9% Similarity=-0.126 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcc---HHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCChh---
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEI-GIKPN---GVTFIGLLHACGHM-GWVDEGRRFFYSMTTEYGIIPQIE--- 118 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~---~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~g~~~~~~--- 118 (352)
.+...|...|.+.|+.++..+++...+.- +.-|- ......+++.+... +..+.-.++..+..+...-+--..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999887521 12232 33467888888775 444545555554443211111111
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCcchH
Q 048117 119 -HYGCMVDLLSRAGFLQEAYEFIRNM----PIKPN----GVVWGALLGGCRVHKNIDLAEEASRQLDQ---LDPLNNGYH 186 (352)
Q Consensus 119 -~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~ 186 (352)
+-.-|+..|...|++.+|.+++.++ ..-.| ...|-.-+..|...++..++...+..... ..+.++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i- 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV- 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH-
Confidence 2236889999999999999988888 21111 22355566678899999999999988765 22222322
Q ss_pred HHHHH-----HHH-HccCHHHHHHHHHHH
Q 048117 187 VVLSN-----IYA-EAERWEDVARVRKLM 209 (352)
Q Consensus 187 ~~l~~-----~~~-~~g~~~~a~~~~~~m 209 (352)
..-++ ++. ..++|..|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22222 345 788999998877654
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.68 E-value=13 Score=27.45 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=37.1
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 048117 142 NMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190 (352)
Q Consensus 142 ~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 190 (352)
.+..-|++....+.+.+|.+.+++..|.++++-++....+....|..++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3466789999999999999999999999999988863333344565544
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.94 E-value=22 Score=29.65 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=69.4
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CcchHHHHHHHHHhcC
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP----NGVVWGALLGGCRVHK 163 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~li~~~~~~g 163 (352)
....+.|.++++++....-++ .-+.|...-..|+..+|-.|+++.|.+-++.. ...| ....|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~--- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ--- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH---
Confidence 345677888888888877774 44667788888999999999999997766655 2233 3334555554421
Q ss_pred CHHHHHHHHHHHHh--cCC---CC-cchHHHHHHHH--HHccCHHHHHHHHHHHHhc
Q 048117 164 NIDLAEEASRQLDQ--LDP---LN-NGYHVVLSNIY--AEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 164 ~~~~a~~~~~~~~~--~~~---~~-~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~ 212 (352)
.=..+.. ..| .. ......|+.+. ...|+.++|..+.....+.
T Consensus 80 -------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 -------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1122221 111 11 22333555554 3468999999988887553
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.71 E-value=12 Score=31.10 Aligned_cols=55 Identities=9% Similarity=0.020 Sum_probs=33.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 158 GCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
...+.|+++.+......-.+..|.+...-..|+..+|-.|+|+.|.+=++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445566666666666655666666555556666666666666666655555443
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.63 E-value=70 Score=32.77 Aligned_cols=120 Identities=13% Similarity=-0.016 Sum_probs=83.1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC--------------------------CHHHHHHHHHHHHHcCCHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEER--------------------------TVFTWSAMIQGLAIHGQAKEAL 66 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------------------------~~~~~~~li~~~~~~g~~~~A~ 66 (352)
.++..-=.+-.+|..+|++++|...|.+.... -..-|..++..+-+.|.++.++
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 34443334455677899999999999876421 0123677888899999999999
Q ss_pred HHHHHHHHcCC-C-ccHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 048117 67 TSFNKMIEIGI-K-PNGV--TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135 (352)
Q Consensus 67 ~l~~~m~~~g~-~-p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~ 135 (352)
++-+...+..- . ++.. .|..+.+++...|++++|...+-.+... . .-......||..+|..|.++.
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCChhh
Confidence 88777664322 1 2222 4788999999999999998888766532 2 234567778877777766554
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.81 E-value=33 Score=26.20 Aligned_cols=79 Identities=5% Similarity=-0.104 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEE------RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
+..-+.+.+...|++..|...|++..+ ++..+..++- .....+ .. ....++...---+-.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~---~~ss~p-~s---------~~~~~e~Elkykia~C 131 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG---NSASTP-QS---------QCLPSEIEVKYKLAEC 131 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------------------------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc---ccCCCc-cc---------ccccchHHHHHHHHHH
Confidence 566778888999999999999988431 1211121110 000000 00 0122233332336778
Q ss_pred HhccCCHHHHHHHHHHhH
Q 048117 91 CGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~ 108 (352)
|.+.++.++|..+++.+.
T Consensus 132 ~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 132 YTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHTTCHHHHHHHHHTSC
T ss_pred HHHHCCHHHHHHHHhcCC
Confidence 889999999999877554
No 261
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=70.64 E-value=0.019 Score=52.23 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=86.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcc
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 94 (352)
+.+|+-|-.++.+.|.+.+|.+-| ++..|+..|..+|.+..+.|.+++-+..+.-.++..-.|. .=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhh
Confidence 344666666666666666665543 3344556677777777777777777666654444322332 223567777777
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-----------------------CCCCcch
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP-----------------------IKPNGVV 151 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------~~p~~~~ 151 (352)
+++.+-.+++ -.||..-...+.+-|...|.++.|.-+|..++ ...++.|
T Consensus 130 ~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 130 NRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp CSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred CcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 7765433221 12444445555566666666666666655541 1246788
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 048117 152 WGALLGGCRVHKNIDLAEEA 171 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~ 171 (352)
|-.+-.+|...+.+..|...
T Consensus 202 WKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHH
T ss_pred HHHHHHHHhCchHHHHHHHh
Confidence 99999999888876665444
No 262
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=68.63 E-value=15 Score=27.63 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcc
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQ--AKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 80 (352)
..+.++.-|...|++++|.+.++++..| ..+...++..++=+.+. .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567888899999999999999998766 23455555555554332 4567788888876665433
No 263
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=68.27 E-value=55 Score=27.80 Aligned_cols=196 Identities=9% Similarity=-0.012 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCC--HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCccHH--HHHHHHHHH
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEERT--VFTWSAMIQGLAIHGQ--AKEALTSFNKMIEIGIKPNGV--TFIGLLHAC 91 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~~--~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~ 91 (352)
..++|.-|...|+.++|...++++..|. ...-..+|......++ -+.+-.++..+...-+.++.. .|..++..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 4678999999999999999999998763 2222333443333332 345666777776433343333 244444433
Q ss_pred hccC-CHHHHH----HHHHHhHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHh------C----CCCCC------
Q 048117 92 GHMG-WVDEGR----RFFYSMTTEYGIIPQIEHYGCMVDLLSRAG--FLQEAYEFIRN------M----PIKPN------ 148 (352)
Q Consensus 92 ~~~g-~~~~a~----~~~~~m~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~------m----~~~p~------ 148 (352)
-... +...|. .++.+.+.+..++|.. .....-..-...| -+..|..++.. . |. ++
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~-l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~-~~~~~~~e 163 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTY-IDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGS-GGGQQSVN 163 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTT-TGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCC-CSTTSCHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHH-HHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCC-CCCCCCHH
Confidence 2221 111222 2233333332333321 1110000000000 12233333311 1 10 11
Q ss_pred --cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC--HHHHHHHHHHHHhcCCc
Q 048117 149 --GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER--WEDVARVRKLMRNLGVK 215 (352)
Q Consensus 149 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~ 215 (352)
....+.+|.-|...|+.++|.+.++++..-.........++..+.-+.++ .+.+.+++..+.+.|+.
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 11345788889999999999999988753111111222344444444333 46677888888888876
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.81 E-value=57 Score=29.10 Aligned_cols=96 Identities=9% Similarity=-0.039 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH-
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN--GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV- 124 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li- 124 (352)
++..+...|.+.|+.++|.+.|.+++..-..+. ...+-.++..+...+++..+...+........-.++...-+.+=
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455678888899999999999999986533333 34677788888899999999888887764322233332222111
Q ss_pred ---HHHHhcCCHHHHHHHHHhC
Q 048117 125 ---DLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 125 ---~~~~~~g~~~~A~~~~~~m 143 (352)
-.+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1123567888888877765
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.55 E-value=28 Score=31.16 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCccHHHH--H
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEER------TVFTWSAMIQGLAIHGQAKEALTSFNKMIE---IGIKPNGVTF--I 85 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~--~ 85 (352)
+...+...|.++|+++.|.+.|.++... -+..|-.+|..+...+++..+...+.+... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5678899999999999999999999853 346788889999999999999999999853 3333443321 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhc
Q 048117 86 GLLHACGHMGWVDEGRRFFYSMTTEY 111 (352)
Q Consensus 86 ~ll~a~~~~g~~~~a~~~~~~m~~~~ 111 (352)
.-...+...+++..|.+.|-+....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11223446788999888887776543
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.41 E-value=61 Score=25.59 Aligned_cols=85 Identities=8% Similarity=0.118 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCE
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQ--LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGV 228 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~ 228 (352)
.|-..+..+ ..++......+|..|.. .+..-...|......+...|++.+|.++|+.-.+++-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~----------- 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY----------- 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH-----------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH-----------
Confidence 344444443 23447788899999876 5555567788888899999999999999999988887761
Q ss_pred EEEEEeCCCCchhHHHHHHHHHHHHHHHHHcCc
Q 048117 229 VHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 261 (352)
+...+...+...+|...++
T Consensus 150 --------------~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 150 --------------NRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHHHHHHHHhcCC
Confidence 3333444456678888877
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.15 E-value=39 Score=27.34 Aligned_cols=187 Identities=10% Similarity=-0.029 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH--HHHHHHHHh
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVF---TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT--FIGLLHACG 92 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~ 92 (352)
.++.+...++.|+++....+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 456677778899999988888864433211 1123455556677764 4444555666654321 112333444
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcc-------------hHHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIPQI---EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-------------VWGALL 156 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-------------~~~~li 156 (352)
..|+.+-...+++ .|..++. .-++.| ...++.|+.+-+..+++.- ..++.. -+ +.+
T Consensus 81 ~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~-t~L 152 (285)
T 1wdy_A 81 IAGSVKLLKLFLS-----KGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGA-TAL 152 (285)
T ss_dssp HHTCHHHHHHHHH-----TTCCTTCBCTTCCBHH-HHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCC-CHH
T ss_pred HcCCHHHHHHHHH-----cCCCCCccCcccCCHH-HHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCC-cHH
Confidence 5677665444433 3555442 223333 3446778877666666553 222211 12 344
Q ss_pred HHHHhcCCHHHHHHHHHHHH-hcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 157 GGCRVHKNIDLAEEASRQLD-QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
...+..|+.+....+++... .....+..-.+.| ...+..|......++.+.+.+.|..++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCC
Confidence 44556778776666655411 1111111111223 233456776666677788888887654
No 268
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.32 E-value=51 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 048117 121 GCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 121 ~~li~~~~~~g~~~~A~~~~~~m 143 (352)
+.++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33444444444455554444444
No 269
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=57.11 E-value=3.5 Score=22.93 Aligned_cols=11 Identities=45% Similarity=1.229 Sum_probs=9.0
Q ss_pred ccCccccCCCC
Q 048117 341 FQAGSCSCGDY 351 (352)
Q Consensus 341 ~~~g~c~c~~~ 351 (352)
-++|.|||+-|
T Consensus 19 ~~~~~C~CG~y 29 (42)
T 2l0z_A 19 NSLGGCRCGKY 29 (42)
T ss_dssp CTTSSBTTTTB
T ss_pred cCCceeccccc
Confidence 46899999976
No 270
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=55.61 E-value=44 Score=28.63 Aligned_cols=80 Identities=11% Similarity=-0.083 Sum_probs=34.9
Q ss_pred HHhcCCHHHHHHHHHhCC------CC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCH
Q 048117 127 LSRAGFLQEAYEFIRNMP------IK-PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERW 199 (352)
Q Consensus 127 ~~~~g~~~~A~~~~~~m~------~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (352)
-++.|+.+-+..+++.-. +. .|..-++. +...+..|+.+-+..+++.-......+..-.+.| ..-+..|..
T Consensus 180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~ 257 (364)
T 3ljn_A 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMV 257 (364)
T ss_dssp HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCH
T ss_pred HHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChH
Confidence 346677766666665431 11 12222222 3334456666655444432111111111111222 333466777
Q ss_pred HHHHHHHHH
Q 048117 200 EDVARVRKL 208 (352)
Q Consensus 200 ~~a~~~~~~ 208 (352)
+-+.-+++.
T Consensus 258 ~~v~~Ll~~ 266 (364)
T 3ljn_A 258 LLTKELLQK 266 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 766666554
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.51 E-value=39 Score=27.35 Aligned_cols=193 Identities=12% Similarity=0.032 Sum_probs=99.2
Q ss_pred hHhHHHHhCCCCCHh---HHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048117 2 VHEYSNQSGFRRNIR---VCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75 (352)
Q Consensus 2 i~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 75 (352)
+...+++.|..++.. ...+.+...++.|+.+-+..+++.-..+ |...++.+ ...+..|+.+ +++.+.+.
T Consensus 20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ 94 (285)
T 1wdy_A 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF-LLAAIAGSVK----LLKLFLSK 94 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHTCHH----HHHHHHHT
T ss_pred HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCCHH----HHHHHHHc
Confidence 345667777665532 2345667778889998888888754332 22233333 3344566654 44455556
Q ss_pred CCCccHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh------------hHHHHHHHHHhcCCHHHHHHHH
Q 048117 76 GIKPNGV---TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE------------HYGCMVDLLSRAGFLQEAYEFI 140 (352)
Q Consensus 76 g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~------------~~~~li~~~~~~g~~~~A~~~~ 140 (352)
|..++.. ..+ .+...+..|+.+-...+++ .|..++.. ...+.+...++.|+.+-+..++
T Consensus 95 g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 168 (285)
T 1wdy_A 95 GADVNECDFYGFT-AFMEAAVYGKVKALKFLYK-----RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168 (285)
T ss_dssp TCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHH-----TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCccCcccCC-HHHHHHHhCCHHHHHHHHH-----hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHH
Confidence 6665432 122 3334456677665544443 25444322 0113344456788998888888
Q ss_pred HhCCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCcchHHHHHHHHHHccCHHHHHHHHH
Q 048117 141 RNMPIKPN---GVVWGALLGGCRVHKNIDLAEEASRQLDQLDP----LNNGYHVVLSNIYAEAERWEDVARVRK 207 (352)
Q Consensus 141 ~~m~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (352)
+..+..++ ..-++.+..+ +..++.+....+.+.+.+.+. .+..-.+. +...++.|..+-+..+++
T Consensus 169 ~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 169 DEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH-HHHHHHTTCHHHHHHHHH
T ss_pred HhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHh
Confidence 87544433 3334444444 345553333444444444222 11111122 334456787765554443
No 272
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=53.90 E-value=20 Score=24.48 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHH
Q 048117 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66 (352)
Q Consensus 29 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 66 (352)
...+.|+++++.++.++..+|..++.++.+.|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788889999888888888999999887777765553
No 273
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=53.09 E-value=55 Score=25.61 Aligned_cols=178 Identities=11% Similarity=0.101 Sum_probs=91.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHhc
Q 048117 21 LIDMYVKCGCLEGARRVFIEMEE----RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV---TFIGLLHACGH 93 (352)
Q Consensus 21 li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~ 93 (352)
.+...++.|+++....+++.-+. +|...++.|. ..+..|+.+ +++.+.+.|..++.. ..+. +...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTE----IVEFLLQLGVPVNDKDDAGWSP-LHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCH-HHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCH-HHHHHH
Confidence 46667789999999999886442 3444444444 345567654 444445566655432 2223 334445
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCCHHH
Q 048117 94 MGWVDEGRRFFYSMTTEYGIIPQI---EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN---GVVWGALLGGCRVHKNIDL 167 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~---~~~~~~li~~~~~~g~~~~ 167 (352)
.|+.+-+..+++ .|..++. .-.+.| ...++.|+.+-+..+++. +..++ ..-+ +.+...+..|+.+-
T Consensus 83 ~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~-t~L~~A~~~~~~~~ 154 (231)
T 3aji_A 83 AGXDEIVKALLV-----KGAHVNAVNQNGCTPL-HYAASKNRHEIAVMLLEG-GANPDAKDHYDA-TAMHRAAAKGNLKM 154 (231)
T ss_dssp HTCHHHHHHHHH-----TTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHT-TCCTTCCCTTSC-CHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHH-----cCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHc-CCCCCCcCCCCC-cHHHHHHHcCCHHH
Confidence 677765444432 3554432 223333 344567888776666654 32332 2222 33444556778776
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
...+++.-......+..-.+.| ...+..|+.+- .+.+.+.|..++
T Consensus 155 v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~ga~~~ 199 (231)
T 3aji_A 155 VHILLFYKASTNIQDTEGNTPL-HLACDEERVEE----AKFLVTQGASIY 199 (231)
T ss_dssp HHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTTCCSC
T ss_pred HHHHHhcCCCccccCCCCCCHH-HHHHHCCCHHH----HHHHHHCCCCCC
Confidence 6665543211111111111222 33456677654 444556676553
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.99 E-value=67 Score=23.79 Aligned_cols=45 Identities=7% Similarity=-0.073 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCCcc-hHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 167 LAEEASRQLDQLDPLNNG-YHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
++..+++.+.+..|.... ....|.-++.+.|++++|++..+.+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444455554444442221 222344445555555555555555544
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.13 E-value=58 Score=24.74 Aligned_cols=49 Identities=6% Similarity=0.038 Sum_probs=39.5
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Q 048117 168 AEEASRQLDQ--LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216 (352)
Q Consensus 168 a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 216 (352)
...+|..|.. .+......|......+...|++.+|.+||+.-.+.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 6667888775 445556677888888999999999999999998888776
No 276
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=50.36 E-value=71 Score=23.32 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 048117 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN 148 (352)
Q Consensus 97 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 148 (352)
...|..+++++.+. +-.-.....--|.-++.|.|++++|++..+.+ .++|+
T Consensus 59 ~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 59 ERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 34555555555532 21111233333444555666666666655555 44454
No 277
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.28 E-value=72 Score=23.82 Aligned_cols=25 Identities=12% Similarity=0.192 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 048117 120 YGCMVDLLSRAGFLQEAYEFIRNMP 144 (352)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~~~~~m~ 144 (352)
.+.++.-|...|+.++|.+.+++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445555555555555555555553
No 278
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=50.18 E-value=54 Score=21.92 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHH
Q 048117 28 CGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65 (352)
Q Consensus 28 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 65 (352)
....+.|+++++.++.++..+|..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 35567788888888888888888888888777754433
No 279
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=48.54 E-value=16 Score=29.01 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=8.1
Q ss_pred HHHHHcCCHHHHHHHHH
Q 048117 23 DMYVKCGCLEGARRVFI 39 (352)
Q Consensus 23 ~~~~~~g~~~~A~~~f~ 39 (352)
...++.|+.+....+++
T Consensus 16 ~~A~~~g~~~~v~~Ll~ 32 (237)
T 3b7b_A 16 HAAAEAGHVDICHMLVQ 32 (237)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHH
Confidence 33344555555444444
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.53 E-value=83 Score=23.54 Aligned_cols=50 Identities=6% Similarity=-0.053 Sum_probs=40.3
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Q 048117 167 LAEEASRQLDQ--LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216 (352)
Q Consensus 167 ~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 216 (352)
....+|..|.. .+......|......+...|++.+|.++|+.-.+++-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 37788888876 444555677788888999999999999999988887776
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.50 E-value=56 Score=25.67 Aligned_cols=85 Identities=11% Similarity=-0.060 Sum_probs=36.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCccHHH--HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhh--HHHHHHHHHh
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIGIKPNGVT--FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH--YGCMVDLLSR 129 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~ 129 (352)
...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-...+++ .|..++... ..+.+...++
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-----AGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-----cCCCccccCCCCCCHHHHHHH
Confidence 334455666555555555555554443221 1112333334555543333322 244433211 1122333345
Q ss_pred cCCHHHHHHHHHhC
Q 048117 130 AGFLQEAYEFIRNM 143 (352)
Q Consensus 130 ~g~~~~A~~~~~~m 143 (352)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 66666666666554
No 282
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=48.43 E-value=15 Score=24.76 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHHHHHHHHcCcccCCccc
Q 048117 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVV 268 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~m~~~g~~p~~~t~ 268 (352)
.|+..+++..+++-.++++..|+.||...+
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 467788888888999999999999998754
No 283
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=45.64 E-value=76 Score=23.49 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=33.9
Q ss_pred HHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 048117 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134 (352)
Q Consensus 71 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~ 134 (352)
.|++.|++++..=. .++..+...+..-.|.++++.+.++ +...+..|.---++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 34566666655433 3444444555555677777777644 44455555555556677777654
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.53 E-value=93 Score=24.97 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHh--cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Q 048117 166 DLAEEASRQLDQ--LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216 (352)
Q Consensus 166 ~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 216 (352)
+....+|..|.. .+......|......+...|++.+|.+||+.-.+++-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466788888876 455556678888889999999999999999998888776
No 285
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.34 E-value=55 Score=24.09 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=40.9
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 048117 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135 (352)
Q Consensus 70 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~ 135 (352)
+.|++.|++++..=. .++..+...+..-.|.++++.+.++ +...+..|..--++.+...|-+.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEEE
Confidence 345677877766543 3445555555566778888888754 555566666666677888886643
No 286
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.52 E-value=58 Score=27.84 Aligned_cols=186 Identities=12% Similarity=0.036 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcc
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 94 (352)
..+.+...+..|+++.+..+++.=..+ |..-++.| ...+..|+.+-+ +.+.+.|..++...-.+.+...+..
T Consensus 20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHHHHc
Confidence 345556667789999999998863332 33334444 444556776443 3344445544442222234445567
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCh--------------------hhHHHHHHHHHhcC--CHHHHHHHHHhCCCCCCc---
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQI--------------------EHYGCMVDLLSRAG--FLQEAYEFIRNMPIKPNG--- 149 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~~--------------------~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~~--- 149 (352)
|+.+-+..+++.... .|..++. .-.+.|. ..+..| ..+-+..+++. +..++.
T Consensus 95 g~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~ 171 (364)
T 3ljn_A 95 NKTDLVVALVEGAKE-RGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIKILVQL-GASPTAKDK 171 (364)
T ss_dssp TCHHHHHHHHHHHHH-HTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHHHHHHH-TCCTTCCCT
T ss_pred CCHHHHHHHHHhccc-cCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHHHHHHc-CCCCcccCC
Confidence 888888777776442 2444332 1233444 345667 66666666655 433332
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 150 VVWGALLGGCRVHKNIDLAEEASRQLDQ-----LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
.-++. +...+..|+.+-+..+++.-.. ....+..-.+.| ...+..|..+- .+.+.+.|..++
T Consensus 172 ~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~gad~~ 238 (364)
T 3ljn_A 172 ADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDV----AMRFVEMGIDVN 238 (364)
T ss_dssp TSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHH----HHHHHTTTCCTT
T ss_pred CCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHH----HHHHHHcCCCCC
Confidence 22334 4444677888877777765322 111111111222 23346677654 444556676654
No 287
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=42.79 E-value=71 Score=26.54 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhHHHHHHHHHHHHHHHHHcCcccC
Q 048117 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPN 264 (352)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~ 264 (352)
....|.+.+...|++.++.++-+.+.+....- +. .| ..++..+.+..+.+.-..|.+.|..|-
T Consensus 202 lvl~Lh~vl~~a~~~~~~~~LA~~VA~e~~~l----y~--------~F-----~k~rL~Ell~~ia~sSl~ll~~~~dp~ 264 (270)
T 3cqc_A 202 LCFLLHTILHSTGQYQECLQLADMVSSERHKL----YL--------VF-----SKEELRKLLQKLRESSLMLLDQGLDPL 264 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHTHHHHHHCTTTCG----GG--------GS-----CHHHHHHHHHHHHHHHHHHHTTTBCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccH----HH--------Hh-----hHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 55577788999999999999998887655431 11 11 224666666666666666666666554
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.45 E-value=78 Score=27.57 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 048117 19 NTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHG--QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93 (352)
Q Consensus 19 ~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 93 (352)
+.++.=|...|++++|.+.++++..| ..+...++..++-+.+ ..+...+++..+...|+-+.......+...+..
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ 300 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNE 300 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh
Q ss_pred cCCHH
Q 048117 94 MGWVD 98 (352)
Q Consensus 94 ~g~~~ 98 (352)
..++.
T Consensus 301 ldDl~ 305 (358)
T 3eiq_C 301 IPDIN 305 (358)
T ss_dssp HHHHH
T ss_pred ccHhh
No 289
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=42.05 E-value=28 Score=27.17 Aligned_cols=197 Identities=8% Similarity=-0.020 Sum_probs=98.2
Q ss_pred hHHHHhCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048117 4 EYSNQSGFRRNI---RVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77 (352)
Q Consensus 4 ~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 77 (352)
..+++.|..++. ....+.+...++.|+.+-+..+++.-..+ |...++. +...+..|+.+-+..++ +.+.
T Consensus 8 ~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll----~~~~ 82 (223)
T 2f8y_A 8 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP-LHAAVSADAQGVFQILI----RNRA 82 (223)
T ss_dssp ETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HBTT
T ss_pred HHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHH----HcCC
Confidence 344555655432 23445666678899999988888764433 3333333 34445677765443333 3332
Q ss_pred -Cc---cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHhCCCCCC---
Q 048117 78 -KP---NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH--YGCMVDLLSRAGFLQEAYEFIRNMPIKPN--- 148 (352)
Q Consensus 78 -~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~p~--- 148 (352)
.+ +....+. +...+..|+.+-...+++ .|..++... -.+.+...++.|+.+-+..+++. +..++
T Consensus 83 ~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~ 155 (223)
T 2f8y_A 83 TDLDARMHDGTTP-LILAARLAVEGMLEDLIN-----SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQN 155 (223)
T ss_dssp SCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH-----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred CCcccCCCCCCcH-HHHHHHhCcHHHHHHHHH-----cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcC
Confidence 12 1122222 333345667665444443 355544221 12333444677888777766665 33332
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCC
Q 048117 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTP 218 (352)
Q Consensus 149 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 218 (352)
..-.+ .+...++.|+.+-...+++.-......+..-.+. +....+.|..+ +.+.+.+.|..+++
T Consensus 156 ~~g~t-~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~-l~~A~~~~~~~----i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 156 NREET-PLFLAAREGSYETAKVLLDHFANRDITDHMDRLP-RDIAQERMHHD----IVRLLDEYNLVRSP 219 (223)
T ss_dssp TTCCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHH----HHHHHHHTTCSSCC
T ss_pred CCCcC-HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCH-HHHHHHhcchH----HHHHHHHcCCCccc
Confidence 22233 3444466788776666555422211111111112 23345666655 45556667776544
No 290
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=41.35 E-value=1.1e+02 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 048117 154 ALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185 (352)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 185 (352)
-|.-++.+.|++++|.++.+.+.+..|.+...
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 34456677777777777777777777766433
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.22 E-value=1.1e+02 Score=23.77 Aligned_cols=185 Identities=8% Similarity=-0.009 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH--HHHHHHH
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEE-------RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT--FIGLLHA 90 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a 90 (352)
+.+...++.|+++....+++...+ +|..-++. +...+..|+.+ +++.+.+.|..|+... -.+.+..
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHH
Confidence 345566778999988888874332 23333333 44445677764 4445555676664332 1123444
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCC
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQ---IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG---VVWGALLGGCRVHKN 164 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~---~~~~~li~~~~~~g~ 164 (352)
.+..|+.+-...+++.... .++.++ ..-.+.| ...++.|+.+-+..+++.- ..++. ..-.+.+...+..|+
T Consensus 86 A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAP-GTLDLEARNYDGLTAL-HVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCT-TSCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCCC-ccccccccCcCCCcHH-HHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcCC
Confidence 4567888776666654321 111222 2222333 3345677777666666553 23322 122344555567888
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 165 IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
.+-...+++.-......+..-.+.| ...+..|..+- .+.+.+.|..++
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSAL-HSASGRGLLPL----VRTLVRSGADSS 210 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHHTCHHH----HHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHH----HHHHHhcCCCCC
Confidence 8776666654211111111111222 33456677664 444455666543
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.00 E-value=76 Score=26.92 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCC
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQ--AKEALTSFNKMIEIGIK 78 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 78 (352)
.+.++.-|...|++++|.+.++++..| ..+...++..++-+.++ .+....++..+...|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 446677777777777777777777655 22344444444443322 34556666666655543
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.74 E-value=24 Score=29.27 Aligned_cols=160 Identities=7% Similarity=-0.071 Sum_probs=86.2
Q ss_pred hHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048117 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 78 (352)
+...+++.|..++..-..+.+...+..|+.+-+..+++.=..+ |...++.|. ..+..|+.+-+.. +.+.|..
T Consensus 46 ~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~----Ll~~ga~ 120 (285)
T 3kea_A 46 LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTVKL----FVKKNWR 120 (285)
T ss_dssp HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHH----HHHHCGG
T ss_pred HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHHH----HHhcCCC
Confidence 3456667776665544456666777889998888888754332 333344444 3456777654433 3344665
Q ss_pred ccHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchH
Q 048117 79 PNGVTF---IGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVW 152 (352)
Q Consensus 79 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~ 152 (352)
|+.... .+.+...+..|..+-+..+++ .|..+ +...-.+.+...++.|..+-+..+++.- .-..|..-+
T Consensus 121 ~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~ 195 (285)
T 3kea_A 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-----EIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF 195 (285)
T ss_dssp GGGCSSSGGGSHHHHHHHTTCHHHHHHHHT-----TSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBC
T ss_pred CCccCCCCCCCHHHHHHHcCCHHHHHHHHh-----CCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCC
Confidence 554321 234455566777765554443 24333 2213344445556788888777776553 111233333
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 048117 153 GALLGGCRVHKNIDLAEEA 171 (352)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~ 171 (352)
+..+...+..|+.+-+..+
T Consensus 196 t~~L~~A~~~~~~~~v~~L 214 (285)
T 3kea_A 196 IPDIKLAIDNKDIEMLQAL 214 (285)
T ss_dssp CTTHHHHHHHTCHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHH
Confidence 3334444556776544433
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.53 E-value=1.2e+02 Score=23.07 Aligned_cols=143 Identities=12% Similarity=0.039 Sum_probs=68.1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
.+|..+-...+..+++.|+.+....+.+.+..+|...-...+.++...|.. ++...+.++.. .||...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 355555556666666666654455555555555655555555566655544 23333333332 24555555555555
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~ 164 (352)
.+.+..+....+.. +.. .++..+-...+.++++.+..+....+...+. .++...=...+.++.+.|.
T Consensus 101 ~~~~~~~~~~~L~~-~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 101 GQIGDERAVEPLIK-ALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHCCGGGHHHHHH-HTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS
T ss_pred HHhCcHHHHHHHHH-HHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc
Confidence 55555432222222 221 2455555555555555554332222222222 2344444444445554444
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.97 E-value=1e+02 Score=23.25 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=7.4
Q ss_pred HHHHHHHHhcCCcc
Q 048117 203 ARVRKLMRNLGVKK 216 (352)
Q Consensus 203 ~~~~~~m~~~g~~~ 216 (352)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 44555555556554
No 296
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=38.41 E-value=42 Score=24.32 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=8.1
Q ss_pred HHHcCCHHHHHHHHHh
Q 048117 25 YVKCGCLEGARRVFIE 40 (352)
Q Consensus 25 ~~~~g~~~~A~~~f~~ 40 (352)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555555544
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.32 E-value=61 Score=24.46 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=46.5
Q ss_pred HHHHHHHHHHH-HHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCChhhHHHHHHHHHhcCCHH
Q 048117 62 AKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEHYGCMVDLLSRAGFLQ 134 (352)
Q Consensus 62 ~~~A~~l~~~m-~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-g~~~~~~~~~~li~~~~~~g~~~ 134 (352)
.+.+++-+.+. ++.|++++..-. .++..+...+..-.|.++++.+.++. +...+..|.---++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR~-~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQRE-VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34555555554 567888866543 46677777777778888998887431 33445555555557788888654
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.72 E-value=1.4e+02 Score=22.94 Aligned_cols=120 Identities=11% Similarity=0.008 Sum_probs=46.9
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 048117 35 RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114 (352)
Q Consensus 35 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 114 (352)
..+.+.+..+|...-...+..+.+.|.. ++...+.++.. .+|...-...+.++.+.+..+....+.+ +.. .
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~----~ 92 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK----D 92 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT----C
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc----C
Confidence 3344444444444444444455544442 22222323322 1344333344444444444322222222 111 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 048117 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164 (352)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~ 164 (352)
++..+-...+.++++.|..+....+.+.+. .++...=...+.++.+.|+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALK-DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCC
Confidence 344444444455555554332222222222 2343333344444444444
No 299
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.30 E-value=60 Score=23.12 Aligned_cols=43 Identities=9% Similarity=-0.164 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048117 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT 109 (352)
Q Consensus 67 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 109 (352)
-+|+.+....+.|+...-..-|..+...++++.|.+++-.+..
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566666667777766655556666778899999999887774
No 300
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=36.40 E-value=3e+02 Score=27.51 Aligned_cols=150 Identities=9% Similarity=-0.033 Sum_probs=70.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHH--HHHHHHHhcCCHHH
Q 048117 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG--CMVDLLSRAGFLQE 135 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~--~li~~~~~~g~~~~ 135 (352)
-.|+.+-...++..+.+. ..-+..-+..+--++...|+.+.+..+.+.+.. .-.|...--. ++.-+|+..|+...
T Consensus 502 GTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGRQELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred ccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 445665556666655543 111222233333344467787877777777763 2222222222 23345667778776
Q ss_pred HHHHHHhCCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCH-HHHHHHHHHHH
Q 048117 136 AYEFIRNMPIKP--NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERW-EDVARVRKLMR 210 (352)
Q Consensus 136 A~~~~~~m~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 210 (352)
..++++.+.-.+ ++.....+--++...|+.+.+.++++.+.+..-+....-..+.-+....|.. .++..++..+.
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 666777762122 2222222222344456655555665544442211112222232233333332 45555666664
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.78 E-value=1.7e+02 Score=23.55 Aligned_cols=25 Identities=8% Similarity=-0.235 Sum_probs=14.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 186 HVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
....+..+.+.|+-++|.++|=+.+
T Consensus 94 ~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 94 LKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3344455666677777766665444
No 302
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=35.56 E-value=2e+02 Score=24.30 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHc-----CCCccHHHHH---HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC
Q 048117 61 QAKEALTSFNKMIEI-----GIKPNGVTFI---GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132 (352)
Q Consensus 61 ~~~~A~~l~~~m~~~-----g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~ 132 (352)
.-++|..+|..+... -..|+..... ..+..+.+.-+. +++..+. +.|+.|...++.-++..+++.=.
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~-~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHR----DLYNHLE-EHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHH-HTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHH-HcCCChHHHHHHHHHHHhhhhCC
Confidence 457889999888643 2334432221 122222222222 4556666 45999988899999999988888
Q ss_pred HHHHHHHHHhC
Q 048117 133 LQEAYEFIRNM 143 (352)
Q Consensus 133 ~~~A~~~~~~m 143 (352)
++.+.++++..
T Consensus 239 ~~~~lrlwD~~ 249 (331)
T 3qye_A 239 LGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999988
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.35 E-value=2.7e+02 Score=25.62 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcccCCH-------HHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTV-------FTWS-AMIQGLAIHGQAKEALTSFNKMIE 74 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-------~~~~-~li~~~~~~g~~~~A~~l~~~m~~ 74 (352)
..++|.|+..|...+.++.|..+.....-|.. ..|. -+...+.-.+++.+|.+.|.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35677777777777777777777777654411 2222 123444556777777777766543
No 304
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=35.08 E-value=13 Score=23.57 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=17.8
Q ss_pred ceEEEecCCccccccCccccCC
Q 048117 328 REIVVRDRNRFHCFQAGSCSCG 349 (352)
Q Consensus 328 ~~i~~~d~~~~~~~~~g~c~c~ 349 (352)
+.|-+.|.+..|+|+||+-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566789999999999986544
No 305
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=34.76 E-value=99 Score=27.11 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=52.1
Q ss_pred CcchHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 148 NGVVWGALLGGCRVHKNI--DLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 148 ~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
+..||..+|.-.....++ +++..+++.+.....++...-..|+-.+.+--..++...+.+-|++.+.+
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~ 91 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHP 91 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCc
Confidence 456899999998887775 88999999988866655555556667777877888888888999887754
No 306
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.60 E-value=61 Score=23.29 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCH
Q 048117 51 AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 51 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
.++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555555556666666666665555666655555555555543
No 307
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=34.32 E-value=1.1e+02 Score=21.08 Aligned_cols=45 Identities=24% Similarity=0.155 Sum_probs=20.6
Q ss_pred HhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 128 ~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
...|++++|..+.+.+. -||...|-+|-. .+.|..+++..-+.++
T Consensus 50 mNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 34555555555555544 345555544332 2344444444444333
No 308
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=33.22 E-value=1.2e+02 Score=21.01 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=13.2
Q ss_pred HhcCCHHHHHHHHHhCCCCCCcchHHHH
Q 048117 128 SRAGFLQEAYEFIRNMPIKPNGVVWGAL 155 (352)
Q Consensus 128 ~~~g~~~~A~~~~~~m~~~p~~~~~~~l 155 (352)
...|++++|..+.+.+. -||...|-+|
T Consensus 51 mNrG~Yq~Al~l~~~~c-~pdlepw~AL 77 (116)
T 2p58_C 51 MNRGDYASALQQGNKLA-YPDLEPWLAL 77 (116)
T ss_dssp HHTTCHHHHHHHHTTSC-CGGGHHHHHH
T ss_pred HcchhHHHHHHhcCCCC-CchHHHHHHH
Confidence 34455555555555544 3455555443
No 309
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.44 E-value=1.8e+02 Score=25.23 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCC----HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCc
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEERT----VFTWSAMIQGLAIHGQ--AKEALTSFNKMIEIGIKP 79 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 79 (352)
...++|.=|...||+++|...++++..|+ .+.+..+..++ ..++ -+.+..++..+...|+-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999998874 23444444443 3332 356677777777766533
No 310
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=32.41 E-value=1.1 Score=40.95 Aligned_cols=80 Identities=9% Similarity=0.050 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc
Q 048117 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE 197 (352)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (352)
.+|.-|..++.+.+++.+|.+.|=+.+ |+..|..+|.+..+.|.+++-.+++...++.. .++..-+.|+-+|++.+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTN 130 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHHHHHHHHTSC
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHHHHHHHHhhC
Confidence 345555555555555555554443222 44455555555555555555555555444321 11223344555555555
Q ss_pred CHHH
Q 048117 198 RWED 201 (352)
Q Consensus 198 ~~~~ 201 (352)
+..+
T Consensus 131 rL~e 134 (624)
T 3lvg_A 131 RLAE 134 (624)
T ss_dssp SSST
T ss_pred cHHH
Confidence 5443
No 311
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=32.37 E-value=1.5e+02 Score=21.95 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=17.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHh
Q 048117 188 VLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
.-+..+++.|+.+.+...+..+..
T Consensus 98 ~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 98 VAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667788888888888777764
No 312
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.28 E-value=67 Score=23.15 Aligned_cols=141 Identities=12% Similarity=0.096 Sum_probs=72.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh---hhHHHHHH
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPN---GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI---EHYGCMVD 125 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~ 125 (352)
.+...+..|+.+.+..+++. .+..|+ ..-.+ .+.. +..|+.+-+..+++ .|..++. .-.+.|.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t-~L~~-~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~- 73 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKT-ALQV-MMFGSTAIALELLK-----QGASPNVQDTSGTSPVH- 73 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSCC-HHHH-SCTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHH-
T ss_pred HHHHHHHhCCHHHHHHHHHh---hCcCccccCCCCCc-HHHH-HHcCCHHHHHHHHH-----CCCCCCCcCCCCCCHHH-
Confidence 44556678888888777766 222222 22222 3444 77788876655543 2554442 2333443
Q ss_pred HHHhcCCHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHH
Q 048117 126 LLSRAGFLQEAYEFIRNMPIKP---NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (352)
..++.|+.+-+..+++. +..+ |..-++.+ ...+..|+.+-...+++. ......+..-.+.| ..-+..|+.+-+
T Consensus 74 ~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l-~~A~~~~~~~~v 149 (156)
T 1bd8_A 74 DAARTGFLDTLKVLVEH-GADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL-ELALQRGAQDLV 149 (156)
T ss_dssp HHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHH-HHHHHSCCHHHH
T ss_pred HHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHH-HHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHH-HHHHHcCcHHHH
Confidence 34567888766666554 3332 33333344 444567788777666655 22211111111223 334566777665
Q ss_pred HHHHH
Q 048117 203 ARVRK 207 (352)
Q Consensus 203 ~~~~~ 207 (352)
.-+++
T Consensus 150 ~~Ll~ 154 (156)
T 1bd8_A 150 DILQG 154 (156)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55443
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.67 E-value=2e+02 Score=23.13 Aligned_cols=88 Identities=9% Similarity=0.058 Sum_probs=50.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCc----cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIE--IGIKP----NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
-++.+....++++|+++.++.++ .++++ +.......+..-.....-.-+..+.+++. . .++...-...+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHH
Confidence 46677788888888888887753 22332 11122223333333233333344444442 1 445555666778
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 048117 126 LLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m 143 (352)
.+.|.|..++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888999999998888554
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.53 E-value=1.5e+02 Score=22.94 Aligned_cols=180 Identities=13% Similarity=0.049 Sum_probs=84.9
Q ss_pred HHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHhccC
Q 048117 22 IDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT---FIGLLHACGHMG 95 (352)
Q Consensus 22 i~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g 95 (352)
+...++.|+++....+++.-... |...+ +.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 33457789999988888754332 32222 345555677876544 44444554433211 112344445567
Q ss_pred CHHHHHHHHHHhHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCCHHHHH
Q 048117 96 WVDEGRRFFYSMTTEYGIIPQI---EHYGCMVDLLSRAGFLQEAYEFIRNMPIKP---NGVVWGALLGGCRVHKNIDLAE 169 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~li~~~~~~g~~~~a~ 169 (352)
+.+-...+++ .|..++. ...+. +...++.|+.+-+..+++. +..+ +..-.+.+..++...+..+...
T Consensus 88 ~~~~v~~Ll~-----~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 88 HLSMVVQLMK-----YGADPSLIDGEGCSC-IHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp CHHHHHHHHH-----TTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred CHHHHHHHHH-----cCCCCcccCCCCCCH-HHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence 7765544442 3555542 22233 3444667887766666654 2222 3333445555544444333222
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 170 EASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
.+.+.-......+...-...+...+..|+.+-+..+ .+.|..++
T Consensus 161 ~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~ 204 (240)
T 3eu9_A 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL----LEAGANVD 204 (240)
T ss_dssp HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHH----HHHTCCTT
T ss_pred HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHH----HHcCCCCC
Confidence 222211111111110011123344567777654444 44565543
No 315
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.35 E-value=1.1e+02 Score=22.11 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=33.6
Q ss_pred HHHcCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 048117 72 MIEIGIKPNGVTFIGLLHACGHMG-WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134 (352)
Q Consensus 72 m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~ 134 (352)
|++.|++++..-. .++..+...+ ..-.|.++++.+.++ +...+..|..--++.+...|-+.
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 4556666665543 2444444444 455667777777643 44455555555556667766554
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.79 E-value=1.6e+02 Score=21.42 Aligned_cols=56 Identities=11% Similarity=-0.028 Sum_probs=36.0
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCCHH
Q 048117 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNID 166 (352)
Q Consensus 110 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~ 166 (352)
+.|+.++.. -..++..+...+..-.|.++++.+ ....+..|.--.|..+...|-+.
T Consensus 15 ~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 15 ETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 458777653 445566666666666788888777 22335566666678888888654
No 317
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.50 E-value=1.5e+02 Score=23.61 Aligned_cols=119 Identities=5% Similarity=-0.106 Sum_probs=63.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCccHHH-------HHHHHHHHh--ccCCHHHHHHHHHHhHHh--------cCC-C
Q 048117 53 IQGLAIHGQAKEALTSFNKMIEIGIKPNGVT-------FIGLLHACG--HMGWVDEGRRFFYSMTTE--------YGI-I 114 (352)
Q Consensus 53 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~--~~g~~~~a~~~~~~m~~~--------~g~-~ 114 (352)
+...++.|+.+....+++.+.+.|..++... .+.|..|.. +.|+.+-+..+++.-... ..+ .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 4445567888777777777776666665332 234444442 567777766666543310 001 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcch----------------HHHHHHHHHhcCCHHHHHHHHH
Q 048117 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV----------------WGALLGGCRVHKNIDLAEEASR 173 (352)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~----------------~~~li~~~~~~g~~~~a~~~~~ 173 (352)
.|..-.+.|. .-+..|+.+-+..+++. +..++... -.+.+...+..|+.+-+..+++
T Consensus 89 ~d~~g~t~L~-~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 89 VYYRGQTALH-IAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SSEESBCHHH-HHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCCHHH-HHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1112233343 34567887766666654 33333221 2234445566788777666665
No 318
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.42 E-value=83 Score=23.09 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 048117 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134 (352)
Q Consensus 71 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~ 134 (352)
.+++.|++++..-. .++..+...+ .-.|.++++.+.++ +...+..|.---++.+...|-+.
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcEE
Confidence 34566777665532 2334444444 45677777777643 44555555555556777777653
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.27 E-value=52 Score=24.04 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=21.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~ 133 (352)
++..+...+..-.|.++++.+.++ +...+..|.---++.+...|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCCE
Confidence 344444444444455555555432 3334444444444555555543
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.99 E-value=2.7e+02 Score=23.73 Aligned_cols=62 Identities=11% Similarity=0.189 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEERT---VFTWSAMIQGLAIHG-QAKEALTSFNKMIEIGIK 78 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~ 78 (352)
-..+++.-|...|++++|...++++..|. .+....+..++-+.. ..+.+..++..+.+.|+-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 35678999999999999999999998763 233333333332211 245667777777766653
No 321
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.48 E-value=1.3e+02 Score=23.85 Aligned_cols=119 Identities=9% Similarity=-0.138 Sum_probs=62.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCC--------
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNG-------VTFIGLLHACGH--MGWVDEGRRFFYSMTTEYGII-------- 114 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~g~~-------- 114 (352)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|..|+.. .|+.+-+..+++.-.......
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 344556678887777777777666665543 223344444332 277766666665433210011
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcc----------------hHHHHHHHHHhcCCHHHHHHHHH
Q 048117 115 -PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV----------------VWGALLGGCRVHKNIDLAEEASR 173 (352)
Q Consensus 115 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~----------------~~~~li~~~~~~g~~~~a~~~~~ 173 (352)
.|..-.+.|. .-++.|+.+-+..+++. +..++.. -++ .+...+..|+.+-+..+++
T Consensus 85 ~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g~t-pL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 85 DEFYQGHSALH-IAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFGEL-PLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp STTTTTCCHHH-HHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSCSS-HHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCHHH-HHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccCCCC-HHHHHHHcCCHHHHHHHHh
Confidence 1122333443 34567787777666665 3333322 233 3444456788877666665
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.93 E-value=1.5e+02 Score=21.22 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=30.3
Q ss_pred hcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCCH
Q 048117 110 EYGIIPQIEHYGCMVDLLSRAG-FLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 110 ~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~ 165 (352)
+.|+.++.. -..++..+...+ ..-.|.++++.+ ....+..|.-.-|..+...|-+
T Consensus 11 ~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 11 KAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 347766543 344555555554 555666776666 2233455555556666666654
No 323
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=27.80 E-value=91 Score=20.51 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 97 ~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
.+++...|..|..+.++.|+. +|...+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~ 42 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKEL 42 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHH
Confidence 355555555555555555543 344333
No 324
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.75 E-value=1.6e+02 Score=27.07 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCC
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGAL-------LGGCRVHKNIDLAEEASRQLDQLDP 180 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~~~~~~ 180 (352)
..++|.++..|...+.++.|..+..+.....+..+-+.. -..+.-.+++.+|.+.+......-|
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 567888888888899999999999888432222222222 2345667778888777777655444
No 325
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.62 E-value=1.1e+02 Score=28.49 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 048117 20 TLIDMYVKCGCLEGARRVFIE 40 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~ 40 (352)
.+|..+.-.|.++.|..+++.
T Consensus 247 ~~v~~LvLRGl~~qA~~~L~~ 267 (570)
T 3f3f_C 247 KLLNQLVLRGLLSQAIGCIER 267 (570)
T ss_dssp HHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHh
Confidence 455555666666666666653
No 326
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.58 E-value=1.5e+02 Score=22.19 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 048117 63 KEALTSFNKMIEIGIKPNGV-TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117 (352)
Q Consensus 63 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~ 117 (352)
+++.++|..|...||--... -|..-...+-..|++.+|.++|..-++. +..|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 44889999999888766544 5777777888899999999999877753 666643
No 327
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.29 E-value=2.1e+02 Score=21.83 Aligned_cols=144 Identities=12% Similarity=0.037 Sum_probs=96.6
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
.+|..+-...+..+++.|+.+....+.+.+.++|...-...+.++.+.|.. ++...+.++.. .||..+-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 578888888888888888866667777777788887777888888888865 44455555543 36777777788888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~ 165 (352)
.+.|..+....+. .+.. .++..+-...+.++++.|..+....+.+-+. .++...=...+.++.+.+..
T Consensus 106 ~~~~~~~~~~~L~-~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 106 GQIGDERAVEPLI-KALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp HHHCCGGGHHHHH-HHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSH
T ss_pred HHhCcHHHHHHHH-HHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCch
Confidence 8888754433333 3332 4677777778888888887543333333333 45555555666666666653
No 328
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=26.79 E-value=3e+02 Score=23.58 Aligned_cols=142 Identities=9% Similarity=-0.026 Sum_probs=82.6
Q ss_pred HHHcCCH---HHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHH--
Q 048117 25 YVKCGCL---EGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDE-- 99 (352)
Q Consensus 25 ~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-- 99 (352)
-...|++ =+|.+. |-++..-|.+.+++++|++++.+=-. .+.+.|+..-
T Consensus 22 ~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGG 75 (336)
T ss_dssp HHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHH
T ss_pred HHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHH
Confidence 3456676 566655 44566778899999999998765321 2223344333
Q ss_pred --HHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC--------HHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHH
Q 048117 100 --GRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF--------LQEAYEFIRNMPI--KPNGVVWGALLGGCRVHKNIDL 167 (352)
Q Consensus 100 --a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~--~p~~~~~~~li~~~~~~g~~~~ 167 (352)
+.-+++-+. +.++++|......|+..+..... +++|.++=.+-+. .-|+.....+-..|.+.+++.+
T Consensus 76 DL~~llvevy~-~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 76 DLAVLLVDTFR-QAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 333344444 44788887777777777766553 2223333332221 1255666677788999999998
Q ss_pred HHHHHHHHHhcCCCC--cchHHHHHHHHHHcc
Q 048117 168 AEEASRQLDQLDPLN--NGYHVVLSNIYAEAE 197 (352)
Q Consensus 168 a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 197 (352)
|+.-|- . +.++ ......|.+.+.+.+
T Consensus 155 Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 155 AEKHLV--L--GTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp HHHHHT--T--SCTTHHHHHHHHHHHHHHTSC
T ss_pred HHHHHH--h--cCCchHHHHHHHHHHHHHhcC
Confidence 888762 2 2222 233356666655544
No 329
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.74 E-value=96 Score=27.22 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=18.7
Q ss_pred HhHHHHhCCCCCHhH--HHHHHHHHHHcCCHHHHHHHHHh
Q 048117 3 HEYSNQSGFRRNIRV--CNTLIDMYVKCGCLEGARRVFIE 40 (352)
Q Consensus 3 ~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~ 40 (352)
...+++.|..|+... ..+.+...++.|+.+-+..+++.
T Consensus 30 v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 30 VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 344555555544321 22334444556666666666554
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.25 E-value=5e+02 Score=25.89 Aligned_cols=51 Identities=4% Similarity=-0.162 Sum_probs=31.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
++..|...|..+-+.++.. -++-+...--.+..+|..+|++++|.+.|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666666665544322 22333333234566777888888888888887
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.96 E-value=1.8e+02 Score=21.32 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=15.9
Q ss_pred HHHcCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHhH
Q 048117 72 MIEIGIKPNGVTFIGLLHACGHMG-WVDEGRRFFYSMT 108 (352)
Q Consensus 72 m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~m~ 108 (352)
|++.|++++..=. .++..+...+ ..-.|.++++.+.
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~ 44 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLI 44 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHH
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHH
Confidence 3445555444332 2333333333 3344555555554
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.78 E-value=2e+02 Score=21.11 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=33.1
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCCHH
Q 048117 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNID 166 (352)
Q Consensus 110 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~ 166 (352)
+.|+.++.. -..++..+...+..-.|.++++.+ ....+..|.--.|..+...|-+.
T Consensus 20 ~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 20 KNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 457766543 445566666666666677777776 22345556556677777777643
No 333
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.56 E-value=2.2e+02 Score=21.63 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=9.8
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHhC
Q 048117 121 GCMVDLLSRAG-FLQEAYEFIRNM 143 (352)
Q Consensus 121 ~~li~~~~~~g-~~~~A~~~~~~m 143 (352)
.-++..+.+.| .++.+..+++++
T Consensus 140 ~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 140 NKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHC
Confidence 34444444444 333344444444
No 334
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=24.74 E-value=2.6e+02 Score=22.02 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 048117 60 GQAKEALTSFNKMIEIGIKPNGV-TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115 (352)
Q Consensus 60 g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~ 115 (352)
+...++.++|..|...||--... -|......+-..|++.+|.++|+.-++. +..|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 33556677777776666554433 4555555666667777777777655532 5455
No 335
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.67 E-value=33 Score=21.06 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 63 KEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 63 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
++|.+.|.+|++..-.+..-||.-+|..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 46666666665332223334555555554
No 336
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.60 E-value=1.1e+02 Score=26.11 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcC-----CCccH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC
Q 048117 61 QAKEALTSFNKMIEIG-----IKPNG---VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132 (352)
Q Consensus 61 ~~~~A~~l~~~m~~~g-----~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~ 132 (352)
.-++|.-+|..+...- ..|+. ..+...+..+.+.-+. +++..+. +.|+.|...++.-++..+++.=.
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~-~~~i~~~~~~~~W~ltlF~~~lp 243 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFK-KNNLTPDIYLIDWIFTLYSKSLP 243 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHH-HTTCCGGGTHHHHHHTTTTTTSC
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHH-HcCCCccchHHHHHHHHhcccCC
Confidence 3567777777765321 22222 2223333333333333 3455555 35888888888888888888778
Q ss_pred HHHHHHHHHhC
Q 048117 133 LQEAYEFIRNM 143 (352)
Q Consensus 133 ~~~A~~~~~~m 143 (352)
++.+.++++-+
T Consensus 244 ~~~~lriWD~~ 254 (334)
T 2qq8_A 244 LDLACRIWDVF 254 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888877
No 337
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=23.85 E-value=2.2e+02 Score=20.96 Aligned_cols=39 Identities=21% Similarity=0.139 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048117 134 QEAYEFIRNMPI-KPNGVVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 134 ~~A~~~~~~m~~-~p~~~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
+++.++|+.+.. ....++|.-++..+.+...+-.....+
T Consensus 140 ~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~l~~~ 179 (183)
T 1s6c_A 140 QHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQLF 179 (183)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHhcChHHHHHHHHh
Confidence 344455555421 123445555555554444444444333
No 338
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.24 E-value=4.2e+02 Score=24.01 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=32.8
Q ss_pred HHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048117 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76 (352)
Q Consensus 7 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 76 (352)
.+.|++--...|.--.+.+...|++++|-++--..+. |+..|.+.+-..=...|+..--+.+|.-+.+.|
T Consensus 353 ~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 353 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 3444444444444444555555555555555544443 344444443333333444444455555544443
No 339
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=23.16 E-value=3.4e+02 Score=22.93 Aligned_cols=139 Identities=8% Similarity=-0.085 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHH----HHHHhHHhcCCCCChhhHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR----FFYSMTTEYGIIPQIEHYGC 122 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~----~~~~m~~~~g~~~~~~~~~~ 122 (352)
..|-++..-|.+.+++++|++++.+-- ..+.+.|+..-|-+ +.+-.. +.+++++......
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~-~~~~~~~~~~~~r 97 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYD-LAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHH-HTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHH-HcCCCCCHHHHHH
Confidence 357788888888899999988876532 12333455444433 454444 4589999888888
Q ss_pred HHHHHHhcCC--------HHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHH
Q 048117 123 MVDLLSRAGF--------LQEAYEFIRNMPIK--PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN-GYHVVLSN 191 (352)
Q Consensus 123 li~~~~~~g~--------~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~ 191 (352)
++..+..... +.+|.++=.+.+.. -|+.....+-..|.+.|++.+|+.-|-.- ..+++ .....+.+
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHH
Confidence 8888876432 23444444444321 26667788888899999999988876421 11112 34446666
Q ss_pred HHHHc--cCHHHHHH
Q 048117 192 IYAEA--ERWEDVAR 204 (352)
Q Consensus 192 ~~~~~--g~~~~a~~ 204 (352)
.+... |...++--
T Consensus 175 w~~~~~~~~~~e~dl 189 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAE 189 (312)
T ss_dssp HHHHTTCCCHHHHHH
T ss_pred HHHhcCCCCcchHHH
Confidence 66554 66665543
No 340
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=22.40 E-value=4.6e+02 Score=24.10 Aligned_cols=67 Identities=6% Similarity=-0.047 Sum_probs=38.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHH-----HHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 148 NGVVWGALLGGCRVHKNIDLAEEA-----SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 148 ~~~~~~~li~~~~~~g~~~~a~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
|......+-.-+...|..++-.++ ...+.+..|++......|...|.+.|++-+|-+++..+...+.
T Consensus 177 DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 177 DRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred hHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 444444444555555554432221 1111223344555667888999999999999999999887744
No 341
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=22.13 E-value=3.8e+02 Score=23.12 Aligned_cols=44 Identities=7% Similarity=-0.082 Sum_probs=19.7
Q ss_pred HhcCCHHHHHHHHHhCCCC-----CCcchHHHHHHHHHhcCCHHHHHHHH
Q 048117 128 SRAGFLQEAYEFIRNMPIK-----PNGVVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 128 ~~~g~~~~A~~~~~~m~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
++.|..+-+.-+++. +.. .|..-++.|..+....|+.+-+..++
T Consensus 171 a~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll 219 (376)
T 2aja_A 171 AENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 219 (376)
T ss_dssp HHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHT
T ss_pred HHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 455666555544443 222 12222344443332566665554443
No 342
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.81 E-value=2.7e+02 Score=21.51 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048117 50 SAMIQGLAIHGQAK---EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110 (352)
Q Consensus 50 ~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 110 (352)
.+++.-+.+.|.++ +|-.+.+.|... +...-.-+-........+..-.+++.+|...
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~~----d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~ 94 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQE----DQKRMEKISKRVNAIEEVNNNVKLLTEMVMS 94 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666676654 677777777532 1221111222222333344556677777753
No 343
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.81 E-value=2.1e+02 Score=21.96 Aligned_cols=152 Identities=12% Similarity=0.013 Sum_probs=74.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh---hhHHHHHHHHH
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI---EHYGCMVDLLS 128 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~ 128 (352)
.+...+..|+.+....++..-...--.+|..-.+. +...+..|+.+-...+++ .|..++. .-++.| ...+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t~L-~~A~ 81 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIVEFLLQ-----LGVPVNDKDDAGWSPL-HIAA 81 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHH-----TTCCSCCCCTTSCCHH-HHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHHHHHHH-----hCCCCCCcCCCCCCHH-HHHH
Confidence 46667788998888777765322111122222223 334456677765554443 2554442 233344 3445
Q ss_pred hcCCHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHH
Q 048117 129 RAGFLQEAYEFIRNMPIKP---NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARV 205 (352)
Q Consensus 129 ~~g~~~~A~~~~~~m~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (352)
+.|+.+-+..+++.- ..+ +..-++. +...+..|+.+.+..+++.-......+..-.+. +...+..|+.+-+..
T Consensus 82 ~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~- 157 (231)
T 3aji_A 82 SAGXDEIVKALLVKG-AHVNAVNQNGCTP-LHYAASKNRHEIAVMLLEGGANPDAKDHYDATA-MHRAAAKGNLKMVHI- 157 (231)
T ss_dssp HHTCHHHHHHHHHTT-CCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHHTCHHHHHH-
T ss_pred HcCHHHHHHHHHHcC-CCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHHHH-
Confidence 678887666666543 222 2222333 444456788876666554321111111111122 233456677765544
Q ss_pred HHHHHhcCCccC
Q 048117 206 RKLMRNLGVKKT 217 (352)
Q Consensus 206 ~~~m~~~g~~~~ 217 (352)
+.+.|..++
T Consensus 158 ---Ll~~g~~~~ 166 (231)
T 3aji_A 158 ---LLFYKASTN 166 (231)
T ss_dssp ---HHHTTCCSC
T ss_pred ---HHhcCCCcc
Confidence 444565543
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.67 E-value=1.2e+02 Score=22.34 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCH
Q 048117 46 VFTWSAMIQGLAIHG-QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 46 ~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
+..=-.++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+...|-+
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 334445566666555 6667889999998887777888776677777776654
No 345
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.49 E-value=2.6e+02 Score=20.84 Aligned_cols=131 Identities=7% Similarity=-0.054 Sum_probs=70.3
Q ss_pred HHHHHHcCCHHHHHHHHHhcc-c---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHhcc
Q 048117 22 IDMYVKCGCLEGARRVFIEME-E---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT---FIGLLHACGHM 94 (352)
Q Consensus 22 i~~~~~~g~~~~A~~~f~~m~-~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~ 94 (352)
+...+..|+.+....++..-. . +|...++.|.. .+..|+.+ +++.+.+.|..|+... .+. +...+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSP-YLYAGAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCH-HHHHHHc
Confidence 344467899999999987654 2 23333444444 44567654 4444555676665332 223 3344556
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCC
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQ---IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP---NGVVWGALLGGCRVHKN 164 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~li~~~~~~g~ 164 (352)
|+.+-+..+++. .+..++ ..-.+. +...++.|+.+-+..+++.-+..+ |..-++.+..++. .++
T Consensus 83 ~~~~~~~~Ll~~----~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~-~~~ 152 (201)
T 3hra_A 83 GRTEILAYMLKH----ATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG-LRE 152 (201)
T ss_dssp TCHHHHHHHHHH----SCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH-SSC
T ss_pred CCHHHHHHHHhc----cCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH-hcc
Confidence 777766665543 233332 222223 334467788888887877652222 3334445554443 443
No 346
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.48 E-value=2.6e+02 Score=20.98 Aligned_cols=165 Identities=11% Similarity=-0.001 Sum_probs=98.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048117 32 EGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY 111 (352)
Q Consensus 32 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 111 (352)
..-..+++.+..+|...-...+.++.+.|... +...+.++.. .+|...-...+.++...|..+....+.. +..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~-- 86 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK-- 86 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT--
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc--
Confidence 34445666677778777777788888888643 3444444443 3566666667777777776544433333 331
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048117 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191 (352)
Q Consensus 112 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 191 (352)
.++..+-...+.++++.|..+....+.+.+. .++...=...+.++.+.++.+... .+..+.+ . .+...-...+.
T Consensus 87 --d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~-~L~~~l~-d-~~~~vr~~A~~ 160 (201)
T 3ltj_A 87 --DEDGWVRQSAAVALGQIGDERAVEPLIKALK-DEDWFVRIAAAFALGEIGDERAVE-PLIKALK-D-EDGWVRQSAAD 160 (201)
T ss_dssp --CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHTCGGGHH-HHHHHTT-C-SSHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHc-C-CCHHHHHHHHH
Confidence 3677788888888888887654455555554 456666666777777777644332 2323222 2 23344456667
Q ss_pred HHHHccCHHHHHHHHHHHH
Q 048117 192 IYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 192 ~~~~~g~~~~a~~~~~~m~ 210 (352)
++.+.|..+ +...+..+.
T Consensus 161 aL~~~~~~~-~~~~L~~~l 178 (201)
T 3ltj_A 161 ALGEIGGER-VRAAMEKLA 178 (201)
T ss_dssp HHHHHCSHH-HHHHHHHHH
T ss_pred HHHHhCchh-HHHHHHHHH
Confidence 777777644 444554444
No 347
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.37 E-value=1.2e+02 Score=19.73 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=21.4
Q ss_pred HHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048117 138 EFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174 (352)
Q Consensus 138 ~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (352)
.++.++ +..|++.||+-+...+.+.--...+..+.++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455566 4567888888777665544433444444443
No 348
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.22 E-value=2.4e+02 Score=20.48 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=53.2
Q ss_pred HHHHHHHHHh-c-ccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCc-c-HHHHHHHHHHHhccCCHHHHHHH
Q 048117 31 LEGARRVFIE-M-EERTVFTWSAMIQGLAIHGQ---AKEALTSFNKMIEIGIKP-N-GVTFIGLLHACGHMGWVDEGRRF 103 (352)
Q Consensus 31 ~~~A~~~f~~-m-~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~ 103 (352)
+...++-|+. . ..++..+=-...-+++++.+ ..+++.++.+..+.+ | . ....-.+.-++.+.|+++.|.+.
T Consensus 23 L~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y 100 (134)
T 3o48_A 23 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRY 100 (134)
T ss_dssp HHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444433 2 23455444444556666654 457899999988765 4 2 33444566788999999999999
Q ss_pred HHHhHHhcCCCCChh
Q 048117 104 FYSMTTEYGIIPQIE 118 (352)
Q Consensus 104 ~~~m~~~~g~~~~~~ 118 (352)
.+.+. .++|+..
T Consensus 101 ~d~lL---~~eP~N~ 112 (134)
T 3o48_A 101 VDTLF---EHERNNK 112 (134)
T ss_dssp HHHHH---TTCTTCH
T ss_pred HHHHH---hhCCCCH
Confidence 98887 4577643
No 349
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.14 E-value=1.2e+02 Score=19.26 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHHhcCCCCC
Q 048117 97 VDEGRRFFYSMTTEYGIIPQ 116 (352)
Q Consensus 97 ~~~a~~~~~~m~~~~g~~~~ 116 (352)
.++|.+.|..|..+.++.|+
T Consensus 14 ~eea~~~F~~LL~e~~V~~~ 33 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN 33 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHcCcCCC
Confidence 34555555555555444443
No 350
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.00 E-value=1.7e+02 Score=18.56 Aligned_cols=60 Identities=10% Similarity=0.105 Sum_probs=33.5
Q ss_pred HHHHcCCCccHHHHHHHHHHHhccC-CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC
Q 048117 71 KMIEIGIKPNGVTFIGLLHACGHMG-WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132 (352)
Q Consensus 71 ~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~ 132 (352)
.|.+.|++++..-. .++..+...+ ..-.+.++++.+.++ +...+..|..-.++.+.+.|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCC
Confidence 35566766665543 4555555543 344556666666543 444455555555666666654
No 351
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.72 E-value=76 Score=19.34 Aligned_cols=13 Identities=8% Similarity=0.232 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHH
Q 048117 61 QAKEALTSFNKMI 73 (352)
Q Consensus 61 ~~~~A~~l~~~m~ 73 (352)
+++.|+..|.++.
T Consensus 35 d~~~A~~~F~~l~ 47 (59)
T 1oai_A 35 DYTRSAQAFTHLK 47 (59)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4445555555444
Done!