BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048118
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 509 bits (1310), Expect = e-145, Method: Compositional matrix adjust.
Identities = 253/325 (77%), Positives = 271/325 (83%), Gaps = 26/325 (8%)
Query: 4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHS 63
GLVLKGTMRAHTDMVTAIATPIDN+D+IV+ASRDKSII+W LTK++K YGVA+RRLTGHS
Sbjct: 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS 430
Query: 64 HFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQIVSA 99
HFV+DVVLSSDGQF VGHTKDVLSVAFS+DNRQIVSA
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 100 SRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158
SRDRTIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSASWD+TVKVWNLSN
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 218
CKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCF
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF 610
Query: 219 SPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLN 278
SPNRYWLCAATE IKIWDLESKSIVEDLKVDL IYCTSLN
Sbjct: 611 SPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV-IYCTSLN 669
Query: 279 WSVDGSTLFSGYTDGVIRVWGIGRY 303
WS DGSTLFSGYTDGVIRVWGIGRY
Sbjct: 670 WSADGSTLFSGYTDGVIRVWGIGRY 694
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 382 bits (982), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/324 (58%), Positives = 227/324 (70%), Gaps = 36/324 (11%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
M E + L+GT++ H VT IAT DMI++ASRDK+II+W LT++E YG+ +R L
Sbjct: 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 83
Query: 61 GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
GHSHFV DVV+SSDGQF VGHTKDVLSVAFS DNRQI
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
VS SRD+TIKLWNTLG CKYT+Q+ ++H+EWVSCVRFSPN+ P IVS WD+ VKVWNL
Sbjct: 144 VSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
+NCKL+ GHTGY+NTV VSPDGSLCASGGKDG +LWDL EGK LY+LD G +I+AL
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTS 276
CFSPNRYWLCAAT SIKIWDLE K IV++LK ++ CTS
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-----------CTS 311
Query: 277 LNWSVDGSTLFSGYTDGVIRVWGI 300
L WS DG TLF+GYTD ++RVW +
Sbjct: 312 LAWSADGQTLFAGYTDNLVRVWQV 335
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 90/230 (39%), Gaps = 54/230 (23%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT--GHSHFVQDVV 70
HT V ++A DN IV+ SRDK+I +W+ T GV + + HS +V V
Sbjct: 126 GHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWN------TLGVCKYTVQDESHSEWVSCVR 178
Query: 71 LSSDG--------------------------QFVGHTKDVLSVAFSIDNRQIVSASRDRT 104
S + +GHT + +V S D S +D
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238
Query: 105 IKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR 162
LW+ L E K YT+ GD ++ + FSPN + A+ ++K+W+L +
Sbjct: 239 AMLWD-LNEGKHLYTLDGGDI----INALCFSPNRYW---LCAATGPSIKIWDLEGKIIV 290
Query: 163 ATLAGHTGYVNTVAVSP---------DGSLCASGGKDGVILLWDLAEGKR 203
L ++ A P DG +G D ++ +W + G R
Sbjct: 291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/324 (58%), Positives = 227/324 (70%), Gaps = 36/324 (11%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
M E + L+GT++ H VT IAT DMI++ASRDK+II+W LT++E YG+ +R L
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60
Query: 61 GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
GHSHFV DVV+SSDGQF VGHTKDVLSVAFS DNRQI
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
VS SRD+TIKLWNTLG CKYT+Q+ ++H+EWVSCVRFSPN+ P IVS WD+ VKVWNL
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
+NCKL+ GHTGY+NTV VSPDGSLCASGGKDG +LWDL EGK LY+LD G +I+AL
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTS 276
CFSPNRYWLCAAT SIKIWDLE K IV++LK ++ CTS
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-----------CTS 288
Query: 277 LNWSVDGSTLFSGYTDGVIRVWGI 300
L WS DG TLF+GYTD ++RVW +
Sbjct: 289 LAWSADGQTLFAGYTDNLVRVWQV 312
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 90/230 (39%), Gaps = 54/230 (23%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT--GHSHFVQDVV 70
HT V ++A DN IV+ SRDK+I +W+ T GV + + HS +V V
Sbjct: 103 GHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWN------TLGVCKYTVQDESHSEWVSCVR 155
Query: 71 LSSDG--------------------------QFVGHTKDVLSVAFSIDNRQIVSASRDRT 104
S + +GHT + +V S D S +D
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 215
Query: 105 IKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR 162
LW+ L E K YT+ GD ++ + FSPN + A+ ++K+W+L +
Sbjct: 216 AMLWD-LNEGKHLYTLDGGDI----INALCFSPNRYW---LCAATGPSIKIWDLEGKIIV 267
Query: 163 ATLA---------GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203
L ++A S DG +G D ++ +W + G R
Sbjct: 268 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 287 bits (734), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 153/326 (46%), Positives = 199/326 (61%), Gaps = 44/326 (13%)
Query: 5 LVLKGTMRAHTDMVTAIATP--IDNSDMIVTASRDKSIIVWHLTKE----EKTYGVARRR 58
+ +G + H VT++A P + + +V+ SRDK+++ W + E +YG+ RR
Sbjct: 3 VAYEGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRR 62
Query: 59 LTGHSHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNR 94
L GHS FV DV LS++G +F+GHTKDVLSVAFS DNR
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154
QIVS RD +++WN GEC +T+ G AHT+WVSCVRFSP+ P IVS WD VKVW
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRG-AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
+L+ +L L GHT YV +V VSPDGSLCAS KDGV LWDL +G+ L + AGA I+
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPIN 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
+CFSPNRYW+CAATE+ I+I+DLE+K I+ +L + C
Sbjct: 242 QICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE-------------C 288
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
S+ WS DGSTL+SGYTD VIRVWG+
Sbjct: 289 VSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 39/197 (19%)
Query: 13 AHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVL 71
AHTD V+ + +P ++ +IV+ D + VW L G L GH+++V V +
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLAT-----GRLVTDLKGHTNYVTSVTV 204
Query: 72 SSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSC 130
S DG S+ +D +LW+ T GE + G ++
Sbjct: 205 SPDGSLC------------------ASSDKDGVARLWDLTKGEALSEMAAGAP----INQ 242
Query: 131 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG-HTGYVN------TVAVSPDGSL 183
+ FSPN + A+ ++ +++++L N + LA H G ++A S DGS
Sbjct: 243 ICFSPNRYW---MCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGST 299
Query: 184 CASGGKDGVILLWDLAE 200
SG D VI +W ++E
Sbjct: 300 LYSGYTDNVIRVWGVSE 316
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 182/326 (55%), Gaps = 43/326 (13%)
Query: 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
E LVL+GT+ H VT++AT +++++ASRDK++I W LT +++ +GV R GH
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63 SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
SH VQD L++DG +FVGH DV+SV I+S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
SRD+TIK+W G+C T+ H +WVS VR PN TI+SA D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
NL+ ++ A GH +NT+ SPDG+L AS GKDG I+LW+LA K +Y+L A +
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
+L FSPNRYWL AAT IK++ L+ + +V+DL+ + +
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
SL WS DG TLF+GYTD VIRVW +
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 182/326 (55%), Gaps = 43/326 (13%)
Query: 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
E LVL+GT+ H VT++AT +++++ASRDK++I W LT +++ +GV R GH
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63 SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
SH VQD L++DG +FVGH DV+SV I+S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
SRD+TIK+W G+C T+ H +WVS VR PN TI+SA D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
NL+ ++ A GH +NT+ SPDG+L AS GKDG I+LW+LA K +Y+L A +
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
+L FSPNRYWL AAT IK++ L+ + +V+DL+ + +
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
SL WS DG TLF+GYTD VIRVW +
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 182/326 (55%), Gaps = 43/326 (13%)
Query: 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
E LVL+GT+ H VT++AT +++++ASRDK++I W LT +++ +GV R GH
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63 SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
SH VQD L++DG +FVGH DV+SV I+S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
SRD+TIK+W G+C T+ H +WVS VR PN TI+SA D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
NL+ ++ A GH +NT+ SPDG+L AS GKDG I+LW+LA K +Y+L A +
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
+L FSPNRYWL AAT IK++ L+ + +V+DL+ + +
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
SL WS DG TLF+GYTD VIRVW +
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 181/324 (55%), Gaps = 43/324 (13%)
Query: 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
E LVL+GT+ H VT++AT +++++ASRDK++I W LT +++ +GV R GH
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63 SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
SH VQD L++DG +FVGH DV+SV I+S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
SRD+TIK+W G+C T+ H +WVS VR PN TI+SA D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
NL+ ++ A GH +NT+ SPDG+L AS GKDG I+LW+LA K +Y+L A +
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
+L FSPNRYWL AAT IK++ L+ + +V+DL+ + +
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVW 298
SL WS DG TLF+GYTD VIRVW
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 244 bits (622), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 181/324 (55%), Gaps = 43/324 (13%)
Query: 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LVL+GT+ H VT++AT +++++ASRDK++I W LT +++ +GV R GHSH
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 65 FVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVSAS 100
VQD L++DG +FVGH DV+SV I+S S
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 101 RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVWNL 156
RD+TIK+W G+C T+ H +WVS VR PN TI+SA D+ VK WNL
Sbjct: 121 RDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
+ ++ A GH +NT+ SPDG+L AS GKDG I+LW+LA K +Y+L A + +L
Sbjct: 178 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 237
Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTS 276
FSPNRYWL AAT IK++ L+ + +V+DL+ + + S
Sbjct: 238 AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HAVS 285
Query: 277 LNWSVDGSTLFSGYTDGVIRVWGI 300
L WS DG TLF+GYTD VIRVW +
Sbjct: 286 LAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 240 bits (613), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 179/326 (54%), Gaps = 43/326 (13%)
Query: 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
E LVL+GT+ H VT++AT +++++ASRDK++I W LT +++ +GV R GH
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63 SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
SH VQD L++DG +FVGH DV SV I+S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
SRD+TIK+W G+C T+ H +WVS VR PN TI+SA D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
NL+ ++ A GH +NT+ SPDG+L AS GKDG I LW+LA K Y+L A +
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
+L FSPNRYWL AAT IK++ L+ + +V+DL+ + +
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
SL WS DG TLF+GYTD VIRVW +
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 187/338 (55%), Gaps = 52/338 (15%)
Query: 5 LVLKGTMRAHTDMVTAIATPI-----DNSDMIVTASRDKSIIVWHLTKEEKT--YGVARR 57
+V +G + H+D VT+I ++S ++++ SRDK++++W L +EE+ +G+ +
Sbjct: 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHK 70
Query: 58 RLTGHSHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDN 93
LTGH+HFV D+ LS + +FVGH +V SVAFS DN
Sbjct: 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN 130
Query: 94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP-----NTLQ---PTIVSA 145
RQI+SA +R IKLWN LGECK++ E + H++WVSCVR+SP N +Q P S
Sbjct: 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD---LAEGK 202
WD +KVWN +N ++R T H VN +++SP+G A+GGKD +L+WD L +
Sbjct: 191 GWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249
Query: 203 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXX 262
R + DAG+ I+ + F+P W+ T+Q +KI++L ++S ++
Sbjct: 250 REF--DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIE-------AEPIT 300
Query: 263 XXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
N CTSL W+ G LF+G+TDGVIR +
Sbjct: 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 127/253 (50%), Gaps = 39/253 (15%)
Query: 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV 69
T+ H+ V +A D I +AS DK++ +W+ G + LTGHS V+ V
Sbjct: 339 TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN------GQLLQTLTGHSSSVRGV 391
Query: 70 VLSSDGQ-----------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIK 106
S DGQ GH+ V VAFS D++ I SAS D+T+K
Sbjct: 392 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 107 LWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA 166
LWN G+ T+ H+ V V FSP+ TI SAS D+TVK+WN N +L TL
Sbjct: 452 LWNRNGQLLQTLT---GHSSSVRGVAFSPDG--QTIASASDDKTVKLWN-RNGQLLQTLT 505
Query: 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWL 225
GH+ V VA SPDG AS D + LW+ G+ L +L + + + FSP+ +
Sbjct: 506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTI 564
Query: 226 C-AATEQSIKIWD 237
A++++++K+W+
Sbjct: 565 ASASSDKTVKLWN 577
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 129/260 (49%), Gaps = 40/260 (15%)
Query: 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
G +L+ T+ H+ V +A D I +AS DK++ +W+ G + LTGH
Sbjct: 87 NGQLLQ-TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN------GQLLQTLTGH 138
Query: 63 SHFVQDVVLSSDGQ-----------------------FVGHTKDVLSVAFSIDNRQIVSA 99
S V V S DGQ GH+ V VAFS D + I SA
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 198
Query: 100 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC 159
S D+T+KLWN G+ T+ H+ V V FSP+ TI SAS D+TVK+WN N
Sbjct: 199 SDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDG--QTIASASDDKTVKLWN-RNG 252
Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCF 218
+L TL GH+ VN VA PDG AS D + LW+ G+ L +L + + + F
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 311
Query: 219 SPNRYWLCAAT-EQSIKIWD 237
SP+ + +A+ ++++K+W+
Sbjct: 312 SPDGQTIASASDDKTVKLWN 331
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 128/259 (49%), Gaps = 39/259 (15%)
Query: 4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHS 63
G+ + + AH+ V +A D I +AS DK++ +W+ G + LTGHS
Sbjct: 5 GVKERNRLEAHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN------GQLLQTLTGHS 57
Query: 64 HFVQDVVLSSDGQ-----------------------FVGHTKDVLSVAFSIDNRQIVSAS 100
V V S DGQ GH+ V VAFS D + I SAS
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 117
Query: 101 RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160
D+T+KLWN G+ T+ H+ V V FSP+ TI SAS D+TVK+WN N +
Sbjct: 118 DDKTVKLWNRNGQLLQTLT---GHSSSVWGVAFSPDG--QTIASASDDKTVKLWN-RNGQ 171
Query: 161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFS 219
L TL GH+ V VA SPDG AS D + LW+ G+ L +L + + + FS
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 230
Query: 220 PNRYWLCAAT-EQSIKIWD 237
P+ + +A+ ++++K+W+
Sbjct: 231 PDGQTIASASDDKTVKLWN 249
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 40/260 (15%)
Query: 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
G +L+ T+ H+ V +A D I +AS DK++ +W+ G + LTGH
Sbjct: 46 NGQLLQ-TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN------GQLLQTLTGH 97
Query: 63 SHFVQDVVLSSDGQ-----------------------FVGHTKDVLSVAFSIDNRQIVSA 99
S V+ V S DGQ GH+ V VAFS D + I SA
Sbjct: 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 157
Query: 100 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC 159
S D+T+KLWN G+ T+ H+ V V FSP+ TI SAS D+TVK+WN N
Sbjct: 158 SDDKTVKLWNRNGQLLQTLT---GHSSSVWGVAFSPDG--QTIASASDDKTVKLWN-RNG 211
Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCF 218
+L TL GH+ V VA SPDG AS D + LW+ G+ L +L + ++ + F
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAF 270
Query: 219 SPNRYWLCAAT-EQSIKIWD 237
P+ + +A+ ++++K+W+
Sbjct: 271 RPDGQTIASASDDKTVKLWN 290
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 128/260 (49%), Gaps = 40/260 (15%)
Query: 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
G +L+ T+ H+ V +A D I +AS DK++ +W+ G + LTGH
Sbjct: 210 NGQLLQ-TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN------GQLLQTLTGH 261
Query: 63 SHFVQDVVLSSDGQ-----------------------FVGHTKDVLSVAFSIDNRQIVSA 99
S V V DGQ GH+ V VAFS D + I SA
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 321
Query: 100 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC 159
S D+T+KLWN G+ T+ H+ V V FSP+ TI SAS D+TVK+WN N
Sbjct: 322 SDDKTVKLWNRNGQHLQTLT---GHSSSVWGVAFSPDG--QTIASASDDKTVKLWN-RNG 375
Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCF 218
+L TL GH+ V VA SPDG AS D + LW+ G+ L +L + + + F
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 434
Query: 219 SPNRYWLCAAT-EQSIKIWD 237
SP+ + +A+ ++++K+W+
Sbjct: 435 SPDDQTIASASDDKTVKLWN 454
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 131/315 (41%), Gaps = 75/315 (23%)
Query: 30 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV----------- 78
++V+AS D +I VW + G R L GH+ VQD+ G+ +
Sbjct: 122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176
Query: 79 -------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
GH +V SV+ + IVSASRD+TIK+W + Y ++ H
Sbjct: 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHR 234
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD----- 180
EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+
Sbjct: 235 EWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 292
Query: 181 ---------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRY 223
G SG +D I +WD++ G L +L V L S ++
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 224 WLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDG 283
L A ++++++WD ++K ++ L + TSL++
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTA 392
Query: 284 STLFSGYTDGVIRVW 298
+ +G D ++VW
Sbjct: 393 PYVVTGSVDQTVKVW 407
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 48/256 (18%)
Query: 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
+G TM H V++++ + N D IV+ASRDK+I +W E G + TGH
Sbjct: 180 QGFECIRTMHGHDHNVSSVSI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGH 233
Query: 63 SHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEG 121
+V+ V + DG I S S D+T+++W ECK ++E
Sbjct: 234 REWVRMVRPNQDGTL------------------IASCSNDQTVRVWVVATKECKAELRE- 274
Query: 122 DAHTEWVSCVRFSPNT------------------LQPTIVSASWDRTVKVWNLSNCKLRA 163
H V C+ ++P + P ++S S D+T+K+W++S
Sbjct: 275 --HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPN- 221
TL GH +V V G S D + +WD + + +L+A + +L F
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392
Query: 222 RYWLCAATEQSIKIWD 237
Y + + +Q++K+W+
Sbjct: 393 PYVVTGSVDQTVKVWE 408
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 10/226 (4%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNT 137
GH V V F +VSAS D TIK+W+ G+ + T++ HT+ V + F +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK---GHTDSVQDISFDHSG 162
Query: 138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
+ S S D T+K+W+ + T+ GH V++V++ P+G S +D I +W+
Sbjct: 163 --KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 198 LAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT---EQSIKIWDLESKSIVEDLKVDLXXX 254
+ G + + G PN+ A+ +Q++++W + +K +L+
Sbjct: 221 VQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 255 XXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
+ G L SG D I++W +
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 101 RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160
+ R K W KY + H V+ V F P + +VSAS D T+KVW+
Sbjct: 87 QKRDPKEWIPRPPEKYALS---GHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGD 141
Query: 161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFS 219
TL GHT V ++ G L AS D I LWD + + ++ + ++
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 220 PN-RYWLCAATEQSIKIWDLES 240
PN + + A+ +++IK+W++++
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQT 223
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 4/131 (3%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNT 137
H +VL AFS D+R I + S D+ +K+WN++ GE +T D H+E V+C F+ ++
Sbjct: 661 AHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY---DEHSEQVNCCHFTNSS 717
Query: 138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
+ + S D +K+W+L+ + R T+ GHT VN SPD L AS DG + LWD
Sbjct: 718 HHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Query: 198 LAEGKRLYSLD 208
S++
Sbjct: 778 ATSANERKSIN 788
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 59/201 (29%)
Query: 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTL 138
H K V + F+ D + ++S+S D I++WN L +C + H E V R N+
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFL----RGHQETVKDFRLLKNS- 1062
Query: 139 QPTIVSASWDRTVKVWNL-----------------------SNCKLRAT----------- 164
++S S+D TVKVWN+ K +T
Sbjct: 1063 --RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 165 --------LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL----DAGAV 212
L GH G V A S D +L A+G +G I +W+++ G+ L+ + GA
Sbjct: 1121 DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
Query: 213 IHA-----LCFSPNRYWLCAA 228
H LCFSP+ L +A
Sbjct: 1181 THGGWVTDLCFSPDGKMLISA 1201
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 23/194 (11%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
+ TM HT+ V D+ ++ + S D ++ +W + T R+ + F+
Sbjct: 742 RNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLW-----DATSANERKSINVKQFFLN 795
Query: 68 DVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRT----IKLWNTLGECKYTIQEGDA 123
D + + V ++S D +I+ A++++ I LGE I G
Sbjct: 796 LEDPQEDMEVI-----VKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGE----IHTG-- 844
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H + FSP + + + V++WN + A GH +V+ V SPDGS
Sbjct: 845 HHSTIQYCDFSPQNHLAVVALSQY--CVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 184 CASGGKDGVILLWD 197
+ D I LW+
Sbjct: 903 FLTSSDDQTIRLWE 916
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK 115
GH V V FS D +++S D+TI+LW T CK
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCK 922
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 205
W + NLS R + HT V S DG AS G D + ++ G++L
Sbjct: 602 EWINKKNITNLS----RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLL 657
Query: 206 SLDA--GAVIHALCFSPNRYWLCAATEQSIKIWD 237
+ A V+ + +R+ + ++ +KIW+
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN 691
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 30/181 (16%)
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN--LSNCKLRATLAGHTGYVNTVAVSPDG 181
H + V ++F+ + + T++S+S D ++VWN L C L GH V + +
Sbjct: 1008 HKKTVWHIQFTAD--EKTLISSSDDAEIQVWNWQLDKCIF---LRGHQETVKDFRLLKNS 1062
Query: 182 SLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLE 239
L S DG + +W++ G + + G V+ + + +++ KIW +
Sbjct: 1063 RL-LSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFD 1121
Query: 240 SKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299
+ +L+ + C++ +SVD + L +G +G IR+W
Sbjct: 1122 LLLPLHELR------------------GHNGCVRCSA--FSVDSTLLATGDDNGEIRIWN 1161
Query: 300 I 300
+
Sbjct: 1162 V 1162
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNT 137
H +VL AFS D+ I + S D+ +K+W++ G+ +T D H+E V+C F+ +
Sbjct: 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKS 711
Query: 138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
+ + S D +K+W+L+ + R T+ GHT VN SPD L AS DG + LWD
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 198 LAEGKRLYSLD 208
+ S++
Sbjct: 772 VRSANERKSIN 782
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 68/208 (32%)
Query: 78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD-----AHTEWVSCVR 132
VGH K V + F+ D + ++S+S D I++WN Q GD AH E V R
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW--------QTGDYVFLQAHQETVKDFR 1051
Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRA----------------------------- 163
++ ++S S+D TVKVWN+ ++
Sbjct: 1052 LLQDS---RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108
Query: 164 -------------TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY----- 205
L GH G V A S DG L A+G +G I +W++++G+ L+
Sbjct: 1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168
Query: 206 SLDAGAVIHA-----LCFSPNRYWLCAA 228
S++ G H +CFSP+ L +A
Sbjct: 1169 SVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 37/204 (18%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYT-----------IQEGDAHT-- 125
GH V V FS D ++AS D+TI++W T CK + QE +
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 126 ----------------------EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163
VSC SP+ + D +K+ L N ++ +
Sbjct: 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL--EYVAFGDEDGAIKIIELPNNRVFS 997
Query: 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY 223
+ GH V + + DG S +D VI +W+ G ++ + +
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1057
Query: 224 WLCAATEQSIKIWDLESKSIVEDL 247
L + + ++K+W++ + I D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDF 1081
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 26/182 (14%)
Query: 121 GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD 180
G H + V ++F+ + T++S+S D ++VWN L H V + D
Sbjct: 999 GVGHKKAVRHIQFTADG--KTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQD 1055
Query: 181 GSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL 238
L S DG + +W++ G+ R ++ G V+ S + + +++ KIW
Sbjct: 1056 SRL-LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Query: 239 ESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
+ S + +LK + C++ +S+DG L +G +G IR+W
Sbjct: 1115 DLLSPLHELK------------------GHNGCVRCSA--FSLDGILLATGDDNGEIRIW 1154
Query: 299 GI 300
+
Sbjct: 1155 NV 1156
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 19/192 (9%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHL--TKEEKTYGVARRRLTGHSHF 65
+ TM HT+ V D+ +++ + S D ++ +W + E K+ V R
Sbjct: 736 RNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKR--------- 785
Query: 66 VQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
LSS+ V ++S D +I+ A++++ + I G H
Sbjct: 786 ---FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG--HH 840
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
+ FSP I + + V++WN+ + A GH +V+ V SPDGS
Sbjct: 841 STIQYCDFSPYDHLAVIALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL 898
Query: 186 SGGKDGVILLWD 197
+ D I +W+
Sbjct: 899 TASDDQTIRVWE 910
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 205
W + NLS R + HT V S DG AS G D + ++ G++L
Sbjct: 596 EWINKKTIKNLS----RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL 651
Query: 206 SLDA--GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIV 244
+ A V+ S + Y + ++ +KIWD + +V
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 692
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNT 137
H +VL AFS D+ I + S D+ +K+W++ G+ +T D H+E V+C F+ +
Sbjct: 662 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKS 718
Query: 138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
+ + S D +K+W+L+ + R T+ GHT VN SPD L AS DG + LWD
Sbjct: 719 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Query: 198 LAEGKRLYSLD 208
+ S++
Sbjct: 779 VRSANERKSIN 789
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 68/208 (32%)
Query: 78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD-----AHTEWVSCVR 132
VGH K V + F+ D + ++S+S D I++WN Q GD AH E V R
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW--------QTGDYVFLQAHQETVKDFR 1058
Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRA----------------------------- 163
++ ++S S+D TVKVWN+ ++
Sbjct: 1059 LLQDS---RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1115
Query: 164 -------------TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY----- 205
L GH G V A S DG L A+G +G I +W++++G+ L+
Sbjct: 1116 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1175
Query: 206 SLDAGAVIHA-----LCFSPNRYWLCAA 228
S++ G H +CFSP+ L +A
Sbjct: 1176 SVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 37/204 (18%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYT-----------IQEGDAHT-- 125
GH V V FS D ++AS D+TI++W T CK + QE +
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 126 ----------------------EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163
VSC SP+ + D +K+ L N ++ +
Sbjct: 947 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL--EYVAFGDEDGAIKIIELPNNRVFS 1004
Query: 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY 223
+ GH V + + DG S +D VI +W+ G ++ + +
Sbjct: 1005 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1064
Query: 224 WLCAATEQSIKIWDLESKSIVEDL 247
L + + ++K+W++ + I D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDF 1088
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 26/182 (14%)
Query: 121 GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD 180
G H + V ++F+ + T++S+S D ++VWN L H V + D
Sbjct: 1006 GVGHKKAVRHIQFTADG--KTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQD 1062
Query: 181 GSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL 238
L S DG + +W++ G+ R ++ G V+ S + + +++ KIW
Sbjct: 1063 SRL-LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1121
Query: 239 ESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
+ S + +LK + C++ +S+DG L +G +G IR+W
Sbjct: 1122 DLLSPLHELK------------------GHNGCVRCSA--FSLDGILLATGDDNGEIRIW 1161
Query: 299 GI 300
+
Sbjct: 1162 NV 1163
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 19/192 (9%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHL--TKEEKTYGVARRRLTGHSHF 65
+ TM HT+ V D+ +++ + S D ++ +W + E K+ V R
Sbjct: 743 RNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKR--------- 792
Query: 66 VQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
LSS+ V ++S D +I+ A++++ + I G H
Sbjct: 793 ---FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG--HH 847
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
+ FSP I + + V++WN+ + A GH +V+ V SPDGS
Sbjct: 848 STIQYCDFSPYDHLAVIALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL 905
Query: 186 SGGKDGVILLWD 197
+ D I +W+
Sbjct: 906 TASDDQTIRVWE 917
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 205
W + NLS R + HT V S DG AS G D + ++ G++L
Sbjct: 603 EWINKKTIKNLS----RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL 658
Query: 206 SLDA--GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIV 244
+ A V+ S + Y + ++ +KIWD + +V
Sbjct: 659 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 699
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 17 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 69
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 70 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 108
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 109 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 227 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 79 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 97 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 148
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 266
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS 186
WNL ++ L GHT V + A P ++ AS
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 17 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 69
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 70 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 108
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 109 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 227 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 79 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 97 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 148
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 266
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS 186
WNL ++ L GHT V + A P ++ AS
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 125/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + +S DK I +W G + ++GH
Sbjct: 17 ALKFTLAGHTKAVSSVKFSP--NGEWLAASSADKLIKIWGAYD-----GKFEKTISGHKL 69
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 70 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 108
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 109 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 227 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + ++S D+ IK+W G+ + TI H +S V +S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 79 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 97 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 148
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 266
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G A+ D +I +W +GK ++ + I +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 31 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 83
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 84 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 122
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 123 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 180
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Query: 201 GKRLYSLDAGAVIHALCFSPNR-----YWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 241 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 92
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 93 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 252
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 111 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 162
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 222
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 223 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 280
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 281 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 130
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 131 NFN--PQSNLIVSGSFDESVRIWDV 153
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 14 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 66
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 67 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 105
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 106 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 224 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 75
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 76 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 235
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 94 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 145
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 263
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 113
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 114 NFN--PQSNLIVSGSFDESVRIWDV 136
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 15 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 67
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 68 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 106
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 107 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 164
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 225 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 76
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 77 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 236
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 95 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 146
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 206
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 207 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 264
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 265 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 114
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 115 NFN--PQSNLIVSGSFDESVRIWDV 137
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 13 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 65
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 66 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 104
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 105 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 162
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 223 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 74
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 75 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 234
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 93 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 144
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 204
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 205 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 262
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 263 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 112
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 113 NFN--PQSNLIVSGSFDESVRIWDV 135
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 14 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 66
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 67 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 105
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 106 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 201 GKRLYSLDAGAVIHALCFSPNR-----YWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 224 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 75
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 76 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 235
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 94 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 145
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 263
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 113
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 114 NFN--PQSNLIVSGSFDESVRIWDV 136
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 20 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 72
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 73 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 111
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 112 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 230 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 81
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 82 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 241
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 100 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 151
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 269
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 270 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 119
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 120 NFN--PQSNLIVSGSFDESVRIWDV 142
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 19 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 71
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 72 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 110
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 111 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 168
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 229 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 80
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 81 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 240
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 99 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 150
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 210
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 211 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 268
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 269 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 118
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 119 NFN--PQSNLIVSGSFDESVRIWDV 141
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 20 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 72
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 73 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 111
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 112 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 230 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 81
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 82 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 241
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 100 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 151
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 269
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 270 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 119
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 120 NFN--PQSNLIVSGSFDESVRIWDV 142
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 38 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 90
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 91 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 129
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 130 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 187
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 248 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 99
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 100 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 259
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + KT G + L
Sbjct: 118 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV----KT-GKCLKTL 169
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 287
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 288 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFC- 136
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
N++ + + SG D +R+W +
Sbjct: 137 -CNFNPQSNLIVSGSFDESVRIWDV 160
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 20 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 72
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 73 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 111
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 112 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 230 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 81
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 82 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 241
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 100 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 151
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 269
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 270 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 119
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 120 NFN--PQSNLIVSGSFDESVRIWDV 142
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 82/293 (27%)
Query: 7 LKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHF 65
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 11 LKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLG 63
Query: 66 VQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAH 124
+ DV SSD +VSAS D+T+K+W+ + G+C T++ H
Sbjct: 64 ISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---GH 102
Query: 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 184
+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 103 SNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 160
Query: 185 ASGGKDGV-------------------------------------------ILLWDLAEG 201
S DG+ + LWD ++G
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 220
Query: 202 KRLYSLDAGAVIHALCFSPNR-----YWLCAATEQS-IKIWDLESKSIVEDLK 248
K L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 221 KCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 71
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 72 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 231
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G + L
Sbjct: 90 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GKCLKTL 141
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 202 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 259
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 260 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 109
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 110 NFN--PQSNLIVSGSFDESVRIWDV 132
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
LK T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 36 ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 88
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 89 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 127
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ K TL H+ V+ V + DGSL
Sbjct: 128 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 185
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 246 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 97
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 98 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 257
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + KT G + L
Sbjct: 116 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV----KT-GKCLKTL 167
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYI 285
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 286 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L+ TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 135
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 136 NFN--PQSNLIVSGSFDESVRIWDV 158
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 79 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + ++K+WD ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 46/276 (16%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
L T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 17 ALMFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 69
Query: 65 FVQDVVLSSDGQFV------------------------GHTKDVLSVAFSIDNRQIVSAS 100
+ DV SSD + GH+ V F+ + IVS S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 101 RDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC 159
D ++++W+ G C T+ AH++ VS V F N IVS+S+D ++W+ ++
Sbjct: 130 FDESVRIWDVKTGMCLKTLP---AHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASG 184
Query: 160 K-LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 218
+ L+ + V+ V SP+G + D + LWD ++GK L + G C
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCI 243
Query: 219 SPNR-----YWLCAATEQS-IKIWDLESKSIVEDLK 248
N W+ + +E + + IW+L++K IV+ L+
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G+ + L
Sbjct: 97 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GMCLKTL 148
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D T+KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNMVYI 266
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 111/271 (40%), Gaps = 70/271 (25%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
GHTK V SV FS + + S+S D+ IK+W G+ + TI H +S V +S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
++ +VSAS D+T+K+W++S+ K TL GH+ YV +P
Sbjct: 79 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
DGSL S DG+ +WD A G+ L +L D
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
+ + FSPN +Y L A + +K+WD ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
YC N+SV G + SG D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 82/294 (27%)
Query: 6 VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
L T+ HT V+++ +P N + + ++S DK I +W G + ++GH
Sbjct: 17 ALMFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 69
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
+ DV SSD +VSAS D+T+K+W+ + G+C T++
Sbjct: 70 GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 108
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
H+ +V C F+P + IVS S+D +V++W++ TL H+ V+ V + DGSL
Sbjct: 109 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
S DG+ + LWD ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
Query: 201 GKRLYSLDAGAVIHALCFSPNR-----YWLCAATEQS-IKIWDLESKSIVEDLK 248
GK L + G C N W+ + +E + + IW+L++K IV+ L+
Sbjct: 227 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
++ G LK T++ H++ V P S++IV+ S D+S+ +W + G+ + L
Sbjct: 97 VSSGKCLK-TLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT-----GMCLKTL 148
Query: 60 TGHSHFVQDVVLSSDGQFV-------------------------GHTKDVLSVAFSIDNR 94
HS V V + DG + V V FS + +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 95 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
I++A+ D +KLW+ + G+C T G + ++ FS T IVS S D V +
Sbjct: 209 YILAATLDNDLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV-TGGKWIVSGSEDNMVYI 266
Query: 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLW 196
WNL ++ L GHT V + A P ++ AS D I LW
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
N L TLAGHT V++V SP+G AS D +I +W +GK ++ + I +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
+S + L +A+ ++++KIWD+ S ++ LK ++C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
+ N + + SG D +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 31 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHS------HFVQDVVL--SSD-------- 74
IV+ RD +I +W +K +R LTGH+ + + V++ SSD
Sbjct: 146 IVSGLRDNTIKIW-----DKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDV 200
Query: 75 ------GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEW 127
+ H + VL + F +N +V+ S+DR+I +W+ T++ H
Sbjct: 201 NTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG 187
V+ V F IVSAS DRT+KVWN S C+ TL GH + + L SG
Sbjct: 259 VNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG 312
Query: 188 GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL 238
D I LWD+ G L L+ + N+ + A + IK+WDL
Sbjct: 313 SSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 35/192 (18%)
Query: 27 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86
N+ M+VT S+D+SI VW + T RR L GH V V
Sbjct: 222 NNGMMVTCSKDRSIAVWDMA--SPTDITLRRVLVGHRAAVNVV----------------- 262
Query: 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS 146
D++ IVSAS DRTIK+WNT C++ ++ + H ++C+++ +VS S
Sbjct: 263 ---DFDDKYIVSASGDRTIKVWNT-STCEF-VRTLNGHKRGIACLQYRDR----LVVSGS 313
Query: 147 WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS 206
D T+++W++ L GH V + D SG DG I +WDL + +
Sbjct: 314 SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL-----VAA 366
Query: 207 LDAGAVIHALCF 218
LD A LC
Sbjct: 367 LDPRAPAGTLCL 378
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 17/165 (10%)
Query: 89 FSIDNRQIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS 146
D+++IVS RD TIK+W NTL ECK + HT V C+++ + I++ S
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILT---GHTGSVLCLQYD----ERVIITGS 190
Query: 147 WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK---- 202
D TV+VW+++ ++ TL H V + + + + + KD I +WD+A
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 203 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 247
R + A ++ + F ++Y + A+ +++IK+W+ + V L
Sbjct: 249 RRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTL 292
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
+ T+R H + A+ D S ++V+AS+D +I+W K + + R S +V
Sbjct: 59 RRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 112
Query: 68 DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
+ G +V G ++ S+ +++ R+ G + + +E HT
Sbjct: 113 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 154
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
++SC RF + IV++S D T +W++ + T GHTG V +++++PD L
Sbjct: 155 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 211
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
SG D LWD+ EG R + I+A+CF PN + + + + +++DL +
Sbjct: 212 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
+ D NI C TS+++S G L +GY D VW
Sbjct: 272 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 308
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136
F GH D+ ++ F + + S D T +L++ + + D ++ V FS +
Sbjct: 233 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 292
Query: 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
+++ D VW+ LAGH V+ + V+ DG A+G D + +W
Sbjct: 293 G--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Query: 197 D 197
+
Sbjct: 351 N 351
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCF 218
+ R TL GH + + D L S +DG +++WD +++++ + + +
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 219 SPN-RYWLCAATEQSIKIWDLESK 241
+P+ Y C + I++L+++
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTR 140
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
+ T+R H + A+ D S ++V+AS+D +I+W K + + R S +V
Sbjct: 48 RRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 101
Query: 68 DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
+ G +V G ++ S+ +++ R+ G + + +E HT
Sbjct: 102 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 143
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
++SC RF + IV++S D T +W++ + T GHTG V +++++PD L
Sbjct: 144 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
SG D LWD+ EG R + I+A+CF PN + + + + +++DL +
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
+ D NI C TS+++S G L +GY D VW
Sbjct: 261 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136
F GH D+ ++ F + + S D T +L++ + + D ++ V FS +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
+++ D VW+ LAGH V+ + V+ DG A+G D + +W
Sbjct: 282 --GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 197 D 197
+
Sbjct: 340 N 340
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCF 218
+ R TL GH + + D L S +DG +++WD +++++ + + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 219 SPN-RYWLCAATEQSIKIWDLESK 241
+P+ Y C + I++L+++
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTR 129
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
+ T+R H + A+ D S ++V+AS+D +I+W K + + R S +V
Sbjct: 48 RRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 101
Query: 68 DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
+ G +V G ++ S+ +++ R+ G + + +E HT
Sbjct: 102 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 143
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
++SC RF + IV++S D T +W++ + T GHTG V +++++PD L
Sbjct: 144 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
SG D LWD+ EG R + I+A+CF PN + + + + +++DL +
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
+ D NI C TS+++S G L +GY D VW
Sbjct: 261 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136
F GH D+ ++ F + + S D T +L++ + + D ++ V FS +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
+++ D VW+ LAGH V+ + V+ DG A+G D + +W
Sbjct: 282 --GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 197 D 197
+
Sbjct: 340 N 340
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCF 218
+ R TL GH + + D L S +DG +++WD +++++ + + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 219 SPN-RYWLCAATEQSIKIWDLESK 241
+P+ Y C + I++L+++
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTR 129
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 30/247 (12%)
Query: 6 VLKGTMRAHTDMVTAIA---TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
+L +AH D + ++A +NS+ +VT S D + VW E RL
Sbjct: 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE---------RL--- 70
Query: 63 SHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD 122
D+ S +G +G V+SV S S+S D I+LW+ E I+ D
Sbjct: 71 -----DLQWSLEGHQLG----VVSVDISHTLPIAASSSLDAHIRLWDL--ENGKQIKSID 119
Query: 123 AHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 182
A + FSP++ + + + V ++ + + K +L ++ ++A SPDG
Sbjct: 120 AGPVDAWTLAFSPDS--QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177
Query: 183 LCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATEQS-IKIWDLES 240
ASG DG+I ++D+A GK L++L+ A+ I +L FSP+ L A++ IKI+D++
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Query: 241 KSIVEDL 247
++ L
Sbjct: 238 ANLAGTL 244
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 82 KDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQP 140
K +LS+A+S D + + S + D I +++ G+ +T++ H + + FSP++
Sbjct: 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSLTFSPDS--Q 219
Query: 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD 180
+V+AS D +K++++ + L TL+GH +V VA PD
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL 138
GH + S+ FS D++ +V+AS D IK+++ G H WV V F P+
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG--HASWVLNVAFCPDDT 261
Query: 139 QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
VS+S D++VKVW++ T H V V + +GS S G D I ++D
Sbjct: 262 H--FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
+ T+R H + A+ D S ++++AS+D +I+W K + + R S +V
Sbjct: 48 RRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 101
Query: 68 DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
+ G +V G ++ S+ +++ R+ G + + +E HT
Sbjct: 102 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 143
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
++SC RF + IV++S D T +W++ + T GHTG V +++++PD L
Sbjct: 144 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
SG D LWD+ EG R + I+A+CF PN + + + + +++DL +
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
+ D NI C TS+++S G L +GY D VW
Sbjct: 261 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136
F GH D+ ++ F + + S D T +L++ + + D ++ V FS +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
+++ D VW+ LAGH V+ + V+ DG A+G D + +W
Sbjct: 282 --GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 197 D 197
+
Sbjct: 340 N 340
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCF 218
+ R TL GH + + D L S +DG +++WD +++++ + + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 219 SPN-RYWLCAATEQSIKIWDLESK 241
+P+ Y C + I++L+++
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTR 129
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
+ T+R H + A+ D S ++++AS+D +I+W K + + R S +V
Sbjct: 48 RRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 101
Query: 68 DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
+ G +V G ++ S+ +++ R+ G + + +E HT
Sbjct: 102 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 143
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
++SC RF + IV++S D T +W++ + T GHTG V +++++PD L
Sbjct: 144 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
SG D LWD+ EG R + I+A+CF PN + + + + +++DL +
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
+ D NI C TS+++S G L +GY D VW
Sbjct: 261 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136
F GH D+ ++ F + + S D T +L++ + + D ++ V FS +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
+++ D VW+ LAGH V+ + V+ DG A+G D + +W
Sbjct: 282 --GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 197 D 197
+
Sbjct: 340 N 340
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-F 218
+ R TL GH + + D L S +DG +++WD +++++ + C +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 219 SPN-RYWLCAATEQSIKIWDLESK 241
+P+ Y C + I++L+++
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTR 129
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 26/228 (11%)
Query: 27 NSDMIVTASRDKSIIVWHLTK--------EEKTYGVARRRLTGHSHFVQDVVLSSDGQFV 78
N IVT SRD ++ VW L K EE Y + + +FV G
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV--------GVLR 267
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNT 137
GH V +V S +VS S D T+ +W+ +C Y + HT+ + +
Sbjct: 268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDHE- 321
Query: 138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
+ +SAS D T+++W+L N +L TL GHT V + +S S DG I WD
Sbjct: 322 -RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWD 378
Query: 198 LAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE 245
+ R +S + F + L + +E I++L S +V
Sbjct: 379 ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 40/226 (17%)
Query: 30 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89
++V+ S D+++ VW + K G GH+ V+ L +
Sbjct: 175 ILVSGSTDRTVRVWDIKK-----GCCTHVFEGHNSTVR----------------CLDIVE 213
Query: 90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAH------------TEWVSCVRFSPNT 137
+ + IV+ SRD T+ +W E G+ H +V +R +
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVP-DHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 138 LQPT------IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG 191
++ +VS S+D T+ VW+++ K L+GHT + + + C S D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 192 VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWD 237
I +WDL G+ +Y+L + L +++ + AA + SI+ WD
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 30/198 (15%)
Query: 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
Q GH V ++ ++ +VS S DRT+++W+ C + EG H V C+
Sbjct: 157 QLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEG--HNSTVRCLDIVE 213
Query: 136 NTLQPTIVSASWDRTVKVWNL-----------------------SNCKLRATLAGHTGYV 172
IV+ S D T+ VW L N L GH V
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273
Query: 173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYW-LCAATE 230
TV S G++ SG D +++WD+A+ K LY L I++ + R + A+ +
Sbjct: 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331
Query: 231 QSIKIWDLESKSIVEDLK 248
+I+IWDLE+ ++ L+
Sbjct: 332 TTIRIWDLENGELMYTLQ 349
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 184
T ++C++F N +++ + D+ ++V++ N K L+GH G V + + G +
Sbjct: 122 TSVITCLQFEDNY----VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGIL 176
Query: 185 ASGGKDGVILLWDLAEGKRLYSLDAG----AVIHALCFSPNRYWLCAATEQSIKIWDLES 240
SG D + +WD+ +G + + + + + +Y + + + ++ +W L
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 241 KSIVED 246
+S V D
Sbjct: 237 ESSVPD 242
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 26/228 (11%)
Query: 27 NSDMIVTASRDKSIIVWHLTK--------EEKTYGVARRRLTGHSHFVQDVVLSSDGQFV 78
N IVT SRD ++ VW L K EE Y + + +FV G
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV--------GVLR 267
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNT 137
GH V +V S +VS S D T+ +W+ +C Y + HT+ + +
Sbjct: 268 GHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILS---GHTDRIYSTIYDHE- 321
Query: 138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
+ +SAS D T+++W+L N +L TL GHT V + +S S DG I WD
Sbjct: 322 -RKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWD 378
Query: 198 LAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE 245
+ R +S + F + L + +E I++L S +V
Sbjct: 379 ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 40/226 (17%)
Query: 30 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89
++V+ S D+++ VW + K G GH+ V+ L +
Sbjct: 175 ILVSGSTDRTVRVWDIKK-----GCCTHVFEGHNSTVR----------------CLDIVE 213
Query: 90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAH------------TEWVSCVRFSPNT 137
+ + IV+ SRD T+ +W E G+ H +V +R +
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVP-DHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 138 LQPT------IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG 191
++ +VS S+D T+ VW+++ K L+GHT + + + C S D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 192 VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWD 237
I +WDL G+ Y+L + L +++ + AA + SI+ WD
Sbjct: 333 TIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 30/198 (15%)
Query: 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
Q GH V ++ ++ +VS S DRT+++W+ C + EG H V C+
Sbjct: 157 QLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEG--HNSTVRCLDIVE 213
Query: 136 NTLQPTIVSASWDRTVKVWNL-----------------------SNCKLRATLAGHTGYV 172
IV+ S D T+ VW L N L GH V
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV 273
Query: 173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYW-LCAATE 230
TV S G++ SG D +++WD+A+ K LY L I++ + R + A+ +
Sbjct: 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXD 331
Query: 231 QSIKIWDLESKSIVEDLK 248
+I+IWDLE+ + L+
Sbjct: 332 TTIRIWDLENGELXYTLQ 349
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 184
T ++C++F N +++ + D+ ++V++ N K L+GH G V + + G +
Sbjct: 122 TSVITCLQFEDNY----VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGIL 176
Query: 185 ASGGKDGVILLWDLAEGKRLYSLDAG----AVIHALCFSPNRYWLCAATEQSIKIWDLES 240
SG D + +WD+ +G + + + + + +Y + + + ++ +W L
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 241 KSIVED 246
+S V D
Sbjct: 237 ESSVPD 242
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Query: 96 IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154
I+ S D I+++N GE + + +AH +++ + P +P ++S S D TVK+W
Sbjct: 70 IIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLW 124
Query: 155 NLSNC-KLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV 212
N N L T GH +V VA +P D S ASG D + +W L + ++L G
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 213 --IHALCFSP---NRYWLCAATEQSIKIWDLESKSIVEDLK 248
++ + + P Y + A+ + +IKIWD ++KS V L+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 25/201 (12%)
Query: 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVV 70
AH D + +IA +++ S D ++ +W+ E + + + GH HFV
Sbjct: 93 FEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNW---ENNWAL-EQTFEGHEHFV---- 143
Query: 71 LSSDGQFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVS 129
+ VAF+ D S DRT+K+W +LG+ V+
Sbjct: 144 --------------MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVN 188
Query: 130 CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK 189
V + P +P +++AS D T+K+W+ ATL GH V+ P + SG +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 190 DGVILLWDLAEGKRLYSLDAG 210
DG + +W+ + K +L+ G
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVG 269
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSP 135
F H + S+A ++S S D T+KLWN E + +++ + H +V CV F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--WENNWALEQTFEGHEHFVMCVAFNP 150
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVS--PDGSLCASGGKDGV 192
T S DRTVKVW+L TL G VN V PD + D
Sbjct: 151 KD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 193 ILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVD 250
I +WD + +L+ + + F P + + +E ++KIW+ + + + L V
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 251 L 251
L
Sbjct: 270 L 270
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 40/169 (23%)
Query: 24 PIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD 83
P+ + ++TAS D +I +W + S GH +
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTK-----------------------SCVATLEGHMSN 230
Query: 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTI 142
V F I+S S D T+K+WN+ Y +++ + E C+ P T +
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNS---STYKVEKTLNVGLERSWCIATHP-TGRKNY 286
Query: 143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG 191
+++ +D V +L N + T+++ P G L SGGK+
Sbjct: 287 IASGFDNGFTVLSLGNDE------------PTLSLDPVGKLVWSGGKNA 323
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Query: 96 IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154
I+ S D I+++N GE + + +AH +++ + P +P ++S S D TVK+W
Sbjct: 70 IIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLW 124
Query: 155 NLSNC-KLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV 212
N N L T GH +V VA +P D S ASG D + +W L + ++L G
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 213 --IHALCFSP---NRYWLCAATEQSIKIWDLESKSIVEDLK 248
++ + + P Y + A+ + +IKIWD ++KS V L+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 25/201 (12%)
Query: 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVV 70
AH D + +IA +++ S D ++ +W+ E + + + GH HFV
Sbjct: 93 FEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNW---ENNWAL-EQTFEGHEHFV---- 143
Query: 71 LSSDGQFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVS 129
+ VAF+ D S DRT+K+W +LG+ V+
Sbjct: 144 --------------MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVN 188
Query: 130 CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK 189
V + P +P +++AS D T+K+W+ ATL GH V+ P + SG +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 190 DGVILLWDLAEGKRLYSLDAG 210
DG + +W+ + K +L+ G
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVG 269
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSP 135
F H + S+A ++S S D T+KLWN E + +++ + H +V CV F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--WENNWALEQTFEGHEHFVMCVAFNP 150
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVS--PDGSLCASGGKDGV 192
T S DRTVKVW+L TL G VN V PD + D
Sbjct: 151 KD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 193 ILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVD 250
I +WD + +L+ + + F P + + +E ++KIW+ + + + L V
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 251 L 251
L
Sbjct: 270 L 270
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 40/169 (23%)
Query: 24 PIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD 83
P+ + ++TAS D +I +W + S GH +
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTK-----------------------SCVATLEGHMSN 230
Query: 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTI 142
V F I+S S D T+K+WN+ Y +++ + E C+ P T +
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNS---STYKVEKTLNVGLERSWCIATHP-TGRKNY 286
Query: 143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG 191
+++ +D V +L N + T+++ P G L SGGK+
Sbjct: 287 IASGFDNGFTVLSLGNDE------------PTLSLDPVGKLVWSGGKNA 323
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Query: 96 IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154
I+ S D I+++N GE + + +AH +++ + P +P ++S S D TVK+W
Sbjct: 70 IIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLW 124
Query: 155 NLSNC-KLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV 212
N N L T GH +V VA +P D S ASG D + +W L + ++L G
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 213 --IHALCFSP---NRYWLCAATEQSIKIWDLESKSIVEDLK 248
++ + + P Y + A+ + +IKIWD ++KS V L+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 77 FVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
F GH V+ VAF+ D S DRT+K+W +LG+ V+ V + P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
+P +++AS D T+K+W+ ATL GH V+ P + SG +DG + +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 196 WDLAEGKRLYSLDAG 210
W+ + K +L+ G
Sbjct: 255 WNSSTYKVEKTLNVG 269
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSP 135
F H + S+A ++S S D T+KLWN E + +++ + H +V CV F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--WENNWALEQTFEGHEHFVMCVAFNP 150
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVS--PDGSLCASGGKDGV 192
T S DRTVKVW+L TL G VN V PD + D
Sbjct: 151 KDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 193 ILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVD 250
I +WD + +L+ + + F P + + +E ++KIW+ + + + L V
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 251 L 251
L
Sbjct: 270 L 270
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Query: 96 IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154
I+ S D I+++N GE + + +AH +++ + P +P ++S S D TVK+W
Sbjct: 70 IIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLW 124
Query: 155 NLSNC-KLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV 212
N N L T GH +V VA +P D S ASG D + +W L + ++L G
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 213 --IHALCFSP---NRYWLCAATEQSIKIWDLESKSIVEDLK 248
++ + + P Y + A+ + +IKIWD ++KS V L+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 77 FVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
F GH V+ VAF+ D S DRT+K+W +LG+ V+ V + P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
+P +++AS D T+K+W+ ATL GH V+ P + SG +DG + +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 196 WDLAEGKRLYSLDAG 210
W+ + K +L+ G
Sbjct: 255 WNSSTYKVEKTLNVG 269
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSP 135
F H + S+A ++S S D T+KLWN E + +++ + H +V CV F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--WENNWALEQTFEGHEHFVMCVAFNP 150
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVS--PDGSLCASGGKDGV 192
T S DRTVKVW+L TL G VN V PD + D
Sbjct: 151 KDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 193 ILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVD 250
I +WD + +L+ + + F P + + +E ++KIW+ + + + L V
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 251 L 251
L
Sbjct: 270 L 270
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSP 135
VGHT V S DN I+S S DRT+K+WN GEC +T+ HT V C+
Sbjct: 155 LVGHTGGVWSSQMR-DN-IIISGSTDRTLKVWNAETGECIHTLY---GHTSTVRCMHLH- 208
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
+ +VS S D T++VW++ + L GH V V DG SG D ++ +
Sbjct: 209 ---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKV 263
Query: 196 WDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 247
WD L++L +++L F + + + + SI++WD+E+ + + L
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 29 DMIVTASRDKSIIVWHLTKEE---KTYGVARRRLTGHSHFVQDVVLSSD----------G 75
++I++ S D+++ VW+ E YG H H + V S D G
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 229
Query: 76 Q----FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSC 130
Q +GH V V + D R++VS + D +K+W+ E C +T+Q HT V
Sbjct: 230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYS 284
Query: 131 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD 190
++F +VS S D +++VW++ TL GH T + ++ SG D
Sbjct: 285 LQFDG----IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL--TSGMELKDNILVSGNAD 338
Query: 191 GVILLWDLAEGKRLYSLDA----GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVED 246
+ +WD+ G+ L +L + + L F+ N + + ++ + ++K+WDL++ + +
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTGEFIRN 397
Query: 247 L 247
L
Sbjct: 398 L 398
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 35/232 (15%)
Query: 71 LSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVS 129
L S GH V++ NR IVS S D T+K+W+ + G+C T+ G W S
Sbjct: 108 LKSPKVLKGHDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSS 165
Query: 130 CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK 189
+R I+S S DRT+KVWN + TL GHT V + + SG +
Sbjct: 166 QMR------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 217
Query: 190 DGVILLWDLAEGKRLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLK 248
D + +WD+ G+ L+ L G V C + R + A + +K+WD E+++ + L+
Sbjct: 218 DATLRVWDIETGQCLHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Query: 249 VDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
+Y SL + DG + SG D IRVW +
Sbjct: 277 ------------------GHTNRVY--SLQF--DGIHVVSGSLDTSIRVWDV 306
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 44/232 (18%)
Query: 31 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90
+++AS D +I +W + K + V + + F GHT V VA+
Sbjct: 201 LLSASDDHTICLWDINATPKEHRV----------------IDAKNIFTGHTAVVEDVAWH 244
Query: 91 IDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
+ + + S + D+ + +W N + +T+ DAHT V+C+ F+P + + + +
Sbjct: 245 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNCLSFNPYS-EFILATG 300
Query: 146 SWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE-GK 202
S D+TV +W+L N KL+ + H + V SP + ++ AS G D + +WDL++ G+
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 360
Query: 203 RLYSLDAG--------------AVIHALCFSPNRYW-LCAATEQSI-KIWDL 238
+ DA A I ++PN W +C+ +E +I ++W +
Sbjct: 361 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 17/182 (9%)
Query: 72 SSDGQFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLW--NTLGECKYTIQEGD---AHT 125
D + GH K+ ++++ + N ++SAS D TI LW N + I + HT
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 126 EWVSCVRFSPNTLQPTIV-SASWDRTVKVWNLSN---CKLRATLAGHTGYVNTVAVSPDG 181
V V + + L ++ S + D+ + +W+ N K T+ HT VN ++ +P
Sbjct: 236 AVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 182 S-LCASGGKDGVILLWDLAEGK-RLYSLDAGA-VIHALCFSPNRYWLCAA--TEQSIKIW 236
+ A+G D + LWDL K +L+S ++ I + +SP+ + A+ T++ + +W
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 237 DL 238
DL
Sbjct: 354 DL 355
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 90/210 (42%), Gaps = 38/210 (18%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
K HT +V +A + + + + + D+ +++W + SH V
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW---------DTRNNNTSKPSHTVD 278
Query: 68 DVVLSSDGQFVGHTKDVLSVAFSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTE 126
HT +V ++F+ + I+ + S D+T+ LW+ L K + ++H +
Sbjct: 279 -----------AHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKLHSFESHKD 326
Query: 127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC--------------KLRATLAGHTGYV 172
+ V++SP+ + + S+ DR + VW+LS +L GHT +
Sbjct: 327 EIFQVQWSPHN-ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 173 NTVAVSPDGS-LCASGGKDGVILLWDLAEG 201
+ + +P+ + S +D ++ +W +AE
Sbjct: 386 SDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 44/232 (18%)
Query: 31 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90
+++AS D +I +W + K + V + + F GHT V VA+
Sbjct: 197 LLSASDDHTICLWDINATPKEHRV----------------IDAKNIFTGHTAVVEDVAWH 240
Query: 91 IDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
+ + + S + D+ + +W N + +T+ DAHT V+C+ F+P + + + +
Sbjct: 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNCLSFNPYS-EFILATG 296
Query: 146 SWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE-GK 202
S D+TV +W+L N KL+ + H + V SP + ++ AS G D + +WDL++ G+
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356
Query: 203 RLYSLDAG--------------AVIHALCFSPNRYW-LCAATEQSI-KIWDL 238
+ DA A I ++PN W +C+ +E +I ++W +
Sbjct: 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 74 DGQFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLW--NTLGECKYTIQEGD---AHTEW 127
D + GH K+ ++++ + N ++SAS D TI LW N + I + HT
Sbjct: 174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV 233
Query: 128 VSCVRFSPNTLQPTIV-SASWDRTVKVWNLSN---CKLRATLAGHTGYVNTVAVSPDGS- 182
V V + + L ++ S + D+ + +W+ N K T+ HT VN ++ +P
Sbjct: 234 VEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 183 LCASGGKDGVILLWDLAEGK-RLYSLDAGA-VIHALCFSPNRYWLCAA--TEQSIKIWDL 238
+ A+G D + LWDL K +L+S ++ I + +SP+ + A+ T++ + +WDL
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 90/210 (42%), Gaps = 38/210 (18%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
K HT +V +A + + + + + D+ +++W + SH V
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW---------DTRNNNTSKPSHTVD 274
Query: 68 DVVLSSDGQFVGHTKDVLSVAFSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTE 126
HT +V ++F+ + I+ + S D+T+ LW+ L K + ++H +
Sbjct: 275 -----------AHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKLHSFESHKD 322
Query: 127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC--------------KLRATLAGHTGYV 172
+ V++SP+ + + S+ DR + VW+LS +L GHT +
Sbjct: 323 EIFQVQWSPHN-ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 173 NTVAVSPDGS-LCASGGKDGVILLWDLAEG 201
+ + +P+ + S +D ++ +W +AE
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 44/232 (18%)
Query: 31 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90
+++AS D +I +W + K + V + + F GHT V VA+
Sbjct: 199 LLSASDDHTICLWDINATPKEHRV----------------IDAKNIFTGHTAVVEDVAWH 242
Query: 91 IDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
+ + + S + D+ + +W N + +T+ DAHT V+C+ F+P + + + +
Sbjct: 243 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNCLSFNPYS-EFILATG 298
Query: 146 SWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE-GK 202
S D+TV +W+L N KL+ + H + V SP + ++ AS G D + +WDL++ G+
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 358
Query: 203 RLYSLDAG--------------AVIHALCFSPNRYW-LCAATEQSI-KIWDL 238
+ DA A I ++PN W +C+ +E +I ++W +
Sbjct: 359 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 74 DGQFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLW--NTLGECKYTIQEGD---AHTEW 127
D + GH K+ ++++ + N ++SAS D TI LW N + I + HT
Sbjct: 176 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV 235
Query: 128 VSCVRFSPNTLQPTIV-SASWDRTVKVWNLSN---CKLRATLAGHTGYVNTVAVSPDGS- 182
V V + + L ++ S + D+ + +W+ N K T+ HT VN ++ +P
Sbjct: 236 VEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 183 LCASGGKDGVILLWDLAEGK-RLYSLDAGA-VIHALCFSPNRYWLCAA--TEQSIKIWDL 238
+ A+G D + LWDL K +L+S ++ I + +SP+ + A+ T++ + +WDL
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 90/210 (42%), Gaps = 38/210 (18%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
K HT +V +A + + + + + D+ +++W + SH V
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW---------DTRNNNTSKPSHTVD 276
Query: 68 DVVLSSDGQFVGHTKDVLSVAFSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTE 126
HT +V ++F+ + I+ + S D+T+ LW+ L K + ++H +
Sbjct: 277 -----------AHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKLHSFESHKD 324
Query: 127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC--------------KLRATLAGHTGYV 172
+ V++SP+ + + S+ DR + VW+LS +L GHT +
Sbjct: 325 EIFQVQWSPHN-ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 173 NTVAVSPDGS-LCASGGKDGVILLWDLAEG 201
+ + +P+ + S +D ++ +W +AE
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 35/206 (16%)
Query: 128 VSCVRFSPNTLQP-TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS 186
++ V F P+ +P I+S S D TV ++ K ++T HT +V++V +PDGSL AS
Sbjct: 150 MNSVDFKPS--RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 207
Query: 187 GGKDGVILLWDLAEGKR--------LYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWD 237
G DG I+L++ +G + L ++ + L +SP+ + +A+ +++IKIW+
Sbjct: 208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Query: 238 LESKSI---------VEDLKVDLXXXXXXXXXXXXXXXXXXXNI--------------YC 274
+ + + +ED ++ + N
Sbjct: 268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAI 327
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
T+L+ S DG TLFS +G I W I
Sbjct: 328 TALSSSADGKTLFSADAEGHINSWDI 353
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 22/196 (11%)
Query: 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV 66
K T HT V ++ D S + + D +I++++ KT GV F
Sbjct: 182 FKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKT-GV----------FE 229
Query: 67 QDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHT 125
D + + V H+ V + +S D +I SAS D+TIK+WN + + TI G
Sbjct: 230 DDSL-----KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 284
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
+ + ++ L VS S + + N + GH + ++ S DG
Sbjct: 285 DQQLGIIWTKQAL----VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340
Query: 186 SGGKDGVILLWDLAEG 201
S +G I WD++ G
Sbjct: 341 SADAEGHINSWDISTG 356
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 83/212 (39%), Gaps = 32/212 (15%)
Query: 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG 75
D A+A + + + + S D I V K Y + S+ V LS+D
Sbjct: 401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK 460
Query: 76 QFVG-------------------------HTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 110
QFV H ++ SVAFS + +V+ + R + ++
Sbjct: 461 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520
Query: 111 LGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL---A 166
+ HT V+CV +SP+ ++ + + S D +V VWN++ + A
Sbjct: 521 ANNFELAHTNSWTFHTAKVACVSWSPDNVR--LATGSLDNSVIVWNMNKPSDHPIIIKGA 578
Query: 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 198
VN+V + + + S G+D I W++
Sbjct: 579 HAMSSVNSV-IWLNETTIVSAGQDSNIKFWNV 609
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS 146
VA S D + + +D + ++ G ++ H ++ V FS N +V+
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGA--FLVATD 510
Query: 147 WDRTVKVWNLSNCKLRATLAG---HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203
R V ++++N A HT V V+ SPD A+G D +++W++ +
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
Query: 204 LYSLDAGAVIHALCFSPNRYWL------CAATEQSIKIWDLE 239
+ GA HA+ + WL A + +IK W++
Sbjct: 571 HPIIIKGA--HAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 610
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 48/237 (20%)
Query: 28 SDMIVTASRDKSIIVWHLTKEEKTYGV--ARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85
S +++AS D ++ +W + K + A+ TGHS V+DV
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV---------------- 235
Query: 86 SVAFSIDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP 140
A+ + + + S + D+ + +W NT + + + DAHT V+C+ F+P + +
Sbjct: 236 --AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLV---DAHTAEVNCLSFNPYS-EF 289
Query: 141 TIVSASWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDL 198
+ + S D+TV +W+L N KL+ T H + V SP + ++ AS G D + +WDL
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 199 AE-GKRLYSLDAG--------------AVIHALCFSPNRYW-LCAATEQSI-KIWDL 238
++ G+ + DA A I ++PN W +C+ +E +I +IW +
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 89/223 (39%), Gaps = 26/223 (11%)
Query: 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ 139
HT + + +F+ + QI++AS D T LW+ E +Q H V C+ +P+
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDV--ESGQLLQSFHGHGADVLCLDLAPSETG 210
Query: 140 PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 199
T VS D+ VW++ + + H VN+V P G ASG D L+DL
Sbjct: 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Query: 200 EGKRLYSLDAGAVIH---ALCFS-PNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXX 255
+ + ++I ++ FS R + +I +WD+ S V L
Sbjct: 271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-------- 322
Query: 256 XXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
++L S DG+ SG D +RVW
Sbjct: 323 ------------FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 52/271 (19%)
Query: 75 GQFV--------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT- 125
GQFV GH VL + + D R+IVS+S+D + +W++ +T + A T
Sbjct: 50 GQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-----FTTNKEHAVTM 104
Query: 126 --EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK------LRATLAGHTGYVNTVAV 177
WV ++P+ I D V+ L+ K + ++A HT Y++ +
Sbjct: 105 PCTWVMACAYAPSGC--AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162
Query: 178 SPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNR---YWLCAATEQSI 233
+ + DG LWD+ G+ L S GA + L +P+ ++ ++
Sbjct: 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 234 KIWDLESKSIVEDLK-----VDLXXXXXXXXXXXXXXXXXXXNIY--------------- 273
+WD+ S V+ + V+ +Y
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES 282
Query: 274 ----CTSLNWSVDGSTLFSGYTDGVIRVWGI 300
+S+++S+ G LF+GY D I VW +
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 38/217 (17%)
Query: 8 KGTMRAHTDMVTAIATPIDNSDM-IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV 66
K ++ HT+ ++A + NSDM I+TAS D + +W + G + GH V
Sbjct: 147 KKSVAMHTNYLSACS--FTNSDMQILTASGDGTCALWDVES-----GQLLQSFHGHGADV 199
Query: 67 Q--DVVLSSDGQ------------------------FVGHTKDVLSVAFSIDNRQIVSAS 100
D+ S G F H DV SV + S S
Sbjct: 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 101 RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-DRTVKVWNLSNC 159
D T +L++ + + I ++ S V FS L ++ A + D T+ VW++
Sbjct: 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFS---LSGRLLFAGYNDYTINVWDVLKG 316
Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
+ L GH V+T+ VSPDG+ SG D + +W
Sbjct: 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 48/252 (19%)
Query: 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGV--ARRRLTGHSHFVQD 68
+R H ++ + S +++AS D ++ +W + K + A+ TGHS V+D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 69 VVLSSDGQFVGHTKDVLSVAFSIDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDA 123
V A+ + + + S + D+ + +W NT + + + DA
Sbjct: 235 V------------------AWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLV---DA 273
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DG 181
HT V+C+ F+P + + + + S D+TV +W+L N KL+ T H + V SP +
Sbjct: 274 HTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 182 SLCASGGKDGVILLWDLAE-GKRLYSLDAG--------------AVIHALCFSPNRYW-L 225
++ AS G D + +WDL++ G+ + DA A I ++PN W +
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 226 CAATEQSI-KIW 236
C+ +E +I +IW
Sbjct: 393 CSVSEDNIXQIW 404
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 135/343 (39%), Gaps = 72/343 (20%)
Query: 5 LVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHS 63
LV T++ H+ V ++ TP N IV+AS+D +IVW+ +KT+ + H
Sbjct: 56 LVCCRTLQGHSGKVYSLDWTPEKN--WIVSASQDGRLIVWNALTSQKTHAIKL-----HC 108
Query: 64 HFVQDVVLSSDGQFV-------------------------------GHTKDVLSVAFSID 92
+V + + +GQ V GH S + D
Sbjct: 109 PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168
Query: 93 NR-QIVSASRDRTIKLWNTLGECKYTI---QEGDAHTEWVSCVRFSPNTLQPTI-VSASW 147
++++ S D+T LW+ + +I + HT V + S N+L + +S S
Sbjct: 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV--LSLSINSLNANMFISGSC 226
Query: 148 DRTVKVWNLS-NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL-- 204
D TV++W+L + T GH G +N+V PDG +G DG L+D+ G +L
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 205 YSLDAG------AVIHALCFS-PNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXX 257
Y+ + ++ ++ FS R + +WD +V +L
Sbjct: 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-------- 338
Query: 258 XXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
I C L S DGS L +G D +++W
Sbjct: 339 ------LQNSHEGRISCLGL--SSDGSALCTGSWDKNLKIWAF 373
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203
S + RT +N ++ TL GH+G V ++ +P+ + S +DG +++W+ ++
Sbjct: 41 SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 204 LYSLDAGAV-IHALCFSPN-RYWLCAATEQSIKIWDLESKS 242
+++ + F+PN + C + + I++L S++
Sbjct: 101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA 141
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 29/199 (14%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS 72
HT V +++ N++M ++ S D ++ +W L R+T S V+
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDL------------RIT--SRAVR----- 243
Query: 73 SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN--TLGECKYTIQEGDAHTEWVSC 130
+ GH D+ SV F D ++ + S D T +L++ T + + +E D + +
Sbjct: 244 ---TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 131 VRFSPNTLQPTIVSASW-DRTVKVWNLSNCKLRATLA----GHTGYVNTVAVSPDGSLCA 185
V ++ ++ A + + VW+ ++ L H G ++ + +S DGS
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360
Query: 186 SGGKDGVILLWDLAEGKRL 204
+G D + +W + +++
Sbjct: 361 TGSWDKNLKIWAFSGHRKI 379
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 38/249 (15%)
Query: 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVV 70
+R H ++ + S +++AS D +I +W ++ K V +
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI---------- 222
Query: 71 LSSDGQFVGHTKDVLSVAFSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEG-DAHTEWV 128
F GHT V V++ + + + S + D+ + +W+T DAHT V
Sbjct: 223 ------FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEV 276
Query: 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCAS 186
+C+ F+P + + + + S D+TV +W+L N KL+ + H + V SP + ++ AS
Sbjct: 277 NCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 187 GGKDGVILLWDLAE-GKRLYSLDAG--------------AVIHALCFSPNRYW-LCAATE 230
G D + +WDL++ G+ DA A I ++PN W +C+ +E
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 395
Query: 231 QSI-KIWDL 238
+I ++W +
Sbjct: 396 DNIMQVWQM 404
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 38/162 (23%)
Query: 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV 69
++ AHT V ++ + ++ T S DK++ +W L +L HS
Sbjct: 268 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---------NLKLKLHS------ 312
Query: 70 VLSSDGQFVGHTKDVLSVAFSIDNRQIVSAS-RDRTIKLWN--TLGECKYTIQEGD---- 122
F H ++ V +S N I+++S DR + +W+ +GE + D
Sbjct: 313 -------FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPE 365
Query: 123 ------AHTEWVSCVRFSPNTLQP-TIVSASWDRTVKVWNLS 157
HT +S ++PN +P I S S D ++VW ++
Sbjct: 366 LLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQVWQMA 405
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS 186
++ V FSP+ + + + DR +++W++ N K+ L GH + ++ P G S
Sbjct: 125 YIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 187 GGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIV 244
G D + +WDL G+ S++ G A+ +Y + ++++++WD E+ +V
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 245 EDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
E L + ++Y S+ ++ DG ++ SG D +++W +
Sbjct: 243 ERLDSE-----------NESGTGHKDSVY--SVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 24/144 (16%)
Query: 84 VLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQE-------GDAHTEWVSCVRFSP 135
V +VA S D + I + S DR +++W++ E + ++ G H + V V F+
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDS--ETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRA------------TLAGHTGYVNTVAVSPDGSL 183
+ ++VS S DR+VK+WNL N ++ T GH +V +VA + +
Sbjct: 267 DGQ--SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 324
Query: 184 CASGGKDGVILLWDLAEGKRLYSL 207
SG KD +L WD G L L
Sbjct: 325 ILSGSKDRGVLFWDKKSGNPLLML 348
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 40/200 (20%)
Query: 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG 75
D VT +A + I S D+++ VW + F+ + + S +
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWD----------------SETGFLVERLDSENE 250
Query: 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-------------TLGECKYTIQEGD 122
GH V SV F+ D + +VS S DR++KLWN G C+ T
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI--- 307
Query: 123 AHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS---- 178
H ++V V + N I+S S DR V W+ + L GH V +VAV+
Sbjct: 308 GHKDFVLSVATTQN--DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 365
Query: 179 --PDGSLCASGGKDGVILLW 196
P+ ++ A+G D +W
Sbjct: 366 LGPEYNVFATGSGDCKARIW 385
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 33/225 (14%)
Query: 1 MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
M + LVL G + AH D ++ + D+ I +W E ++
Sbjct: 1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIW--GTEGDSWICKSVLSE 58
Query: 61 GHSHFVQDVVLSSDGQFV--------------------------GHTKDVLSVAFSIDNR 94
GH V+ V S G ++ GH +V SVA++
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 95 QIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
+ + SRD+++ +W E +Y + ++HT+ V V + P+ Q + SAS+D TVK+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS--QELLASASYDDTVKL 176
Query: 154 W--NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
+ + ATL GH V ++A P G AS D + +W
Sbjct: 177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 96 IVSASRDRTIKLWNTLGE---CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK 152
+ S DR I++W T G+ CK + EG H V V +SP + SAS+D T
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEG--HQRTVRKVAWSP--CGNYLASASFDATTC 86
Query: 153 VW--NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 200
+W N + + TL GH V +VA +P G+L A+ +D + +W++ E
Sbjct: 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 148 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 207
D + VW+L N L GHT + + +S DG+ +GG D + WDL EG++L
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 208 DAGAVIHALCFSPNRYWLCAATEQS 232
D + I +L + P WL E S
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESS 246
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 151 VKVWNLSNCKLRATLA-----GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 205
VKVW++S+ ++ ++ Y+ + + PDG GG+ + +WDLA
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 206 SLD---AGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXX 261
+ + +AL SP+ + ++ +I +WDL ++++V +
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA------- 186
Query: 262 XXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
+ ++ S DG+ L++G D +R W +
Sbjct: 187 -------------SCIDISNDGTKLWTGGLDNTVRSWDL 212
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Query: 56 RRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV-AFSIDNRQIVSASRDRTIKLWNTLGEC 114
+ RL GH ++ DG + D +V + R+ + + + IK+ ++
Sbjct: 70 KARLDGHDFLFNTII--RDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 127
Query: 115 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174
+ I + AH ++ ++F P+ ++S+S D +K+W++ + TL GH V
Sbjct: 128 QREIDQ--AHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 183
Query: 175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
+A+ G S DG I LW+ G +++ + H
Sbjct: 184 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH 223
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Query: 56 RRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV-AFSIDNRQIVSASRDRTIKLWNTLGEC 114
+ RL GH ++ DG + D +V + R+ + + + IK+ ++
Sbjct: 73 KARLDGHDFLFNTII--RDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 130
Query: 115 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174
+ I + AH ++ ++F P+ ++S+S D +K+W++ + TL GH V
Sbjct: 131 QREIDQ--AHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186
Query: 175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
+A+ G S DG I LW+ G +++ + H
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH 226
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 15/166 (9%)
Query: 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 201
+ S S D + VW N + TL GHTG + ++ V C +G D I LWD++ G
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106
Query: 202 KRLYSLDAGAVIHALCFSP-NRYWLC-----AATEQSIKIWDLESKSIVEDL-KVDLXXX 254
+ + + + + + FSP Y+L SI I+++E S +L KV
Sbjct: 107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166
Query: 255 XXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
T WS G + +G+ DG I + +
Sbjct: 167 HKIITHEGLDA--------ATVAGWSTKGKYIIAGHKDGKISKYDV 204
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
+ GH G +NTVA+SP G+ ASGG+DG I L
Sbjct: 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAV--IHALCFSP 220
L GH + V + +G L S KD +W G+RL +LD G + I CF+
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT- 86
Query: 221 NRYWLCAATEQSIKIWDLESKSIV 244
+Y + + + SIK+WD+ + V
Sbjct: 87 -KYCVTGSADYSIKLWDVSNGQCV 109
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEW---VSCVR 132
+ GH + + V ++ + + S S+D + +W +L + +G T W V C
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-- 84
Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT 164
V+ S D ++K+W++SN + AT
Sbjct: 85 -----FTKYCVTGSADYSIKLWDVSNGQCVAT 111
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 24/87 (27%)
Query: 29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88
D++ + S+D S VW Y + RL G GHT + S+
Sbjct: 45 DLLFSCSKDSSASVW--------YSLNGERL---------------GTLDGHTGTIWSID 81
Query: 89 FSIDNRQIVSASRDRTIKLWN-TLGEC 114
+ V+ S D +IKLW+ + G+C
Sbjct: 82 VDCFTKYCVTGSADYSIKLWDVSNGQC 108
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVS---ASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVR 132
F H V +VA+ +++ + DR I++WN G C + DAH++ V +
Sbjct: 192 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQ-VCSIL 247
Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 192
+SP+ + + +W A L GHT V ++ +SPDG+ AS D
Sbjct: 248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 193 ILLWDLAEGKRLYSLD 208
+ LW R + LD
Sbjct: 308 LRLW------RCFELD 317
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK------RLYSLDAGAVIHAL 216
ATL+GH+ V + +PDG ASGG D ++ +W A G+ + ++ GAV A+
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV-KAV 202
Query: 217 CFSPNRYWLCA----ATEQSIKIWDL 238
+ P + + A +++ I+IW++
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNV 228
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTG--YVNTVAVSPDGSLCASGGKDGVILLWDL 198
+++ + D +V +W+ S+ + L Y+++VA +G+ A G + LWD+
Sbjct: 37 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 199 AEGKRLYSL 207
+ KRL ++
Sbjct: 97 QQQKRLRNM 105
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVS---ASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVR 132
F H V +VA+ +++ + DR I++WN G C + DAH++ V +
Sbjct: 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQ-VCSIL 327
Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 192
+SP+ + + +W A L GHT V ++ +SPDG+ AS D
Sbjct: 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 193 ILLWDLAEGKRLYSLD 208
+ LW R + LD
Sbjct: 388 LRLW------RCFELD 397
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK------RLYSLDAGAVIHAL 216
ATL+GH+ V + +PDG ASGG D ++ +W A G+ + ++ GAV A+
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV-KAV 282
Query: 217 CFSPNRYWLCA----ATEQSIKIWDL 238
+ P + + A +++ I+IW++
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTG--YVNTVAVSPDGSLCASGGKDGVILLWDL 198
+++ + D +V +W+ S+ + L Y+++VA +G+ A G + LWD+
Sbjct: 117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 199 AEGKRLYSL 207
+ KRL ++
Sbjct: 177 QQQKRLRNM 185
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVS---ASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVR 132
F H V +VA+ +++ + DR I++WN G C + DAH++ V +
Sbjct: 283 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQ-VCSIL 338
Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 192
+SP+ + + +W A L GHT V ++ +SPDG+ AS D
Sbjct: 339 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 398
Query: 193 ILLWDLAEGKRLYSLD 208
+ LW R + LD
Sbjct: 399 LRLW------RCFELD 408
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK------RLYSLDAGAVIHAL 216
ATL+GH+ V + +PDG ASGG D ++ +W A G+ + ++ GAV A+
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV-KAV 293
Query: 217 CFSPNRYWLCA----ATEQSIKIWDL 238
+ P + + A +++ I+IW++
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTG--YVNTVAVSPDGSLCASGGKDGVILLWDL 198
+++ + D +V +W+ S+ + L Y+++VA +G+ A G + LWD+
Sbjct: 128 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 199 AEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQS-IKIWDLESKSIVEDLKVDLXXXXX 256
+ KRL ++ + A + +L + N Y L + + I D+ + E L
Sbjct: 188 QQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVR---VAEHHVATLSGHSQ 242
Query: 257 XXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
L W+ DG L SG D ++ VW
Sbjct: 243 E----------------VCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 91 IDNRQIVSASRDRTIKLWNTLGE-----CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
+ + I+ AS ++LW L + K+ E D + +S FS T VS
Sbjct: 103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV--FSDGT---QAVSG 157
Query: 146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRL 204
D +VKVW+LS + + H+ VN VA P ++ S G+DG ILLWD + K
Sbjct: 158 GKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217
Query: 205 YSLD 208
+D
Sbjct: 218 TRID 221
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV---IHALCFSPNRYW 224
H V T++V DG+ SGGKD + +WDL++ L S +A + A C + +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 225 LCAATEQSIKIWD 237
L + I +WD
Sbjct: 198 LSCGEDGRILLWD 210
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-----LGECKYTIQEGDAHTEWVSCVRF 133
GH +V VA+S D + + SRD+++ +W T EC +QE H++ V V +
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE---HSQDVKHVIW 161
Query: 134 SPNTLQPTIVSASWDRTVKVWN--LSNCKLRATLAGHTGYVNTVAVSPDGS---LCASGG 188
P+ + + S+S+D TV++W + + A L GH G V + LC SG
Sbjct: 162 HPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC-SGS 218
Query: 189 KDGVILLW 196
D + +W
Sbjct: 219 DDSTVRVW 226
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD--AHTEWVSCVRFSPNTLQPTIVSA 145
+F + + S DR IKL + + I D AH + + V + P+T + +
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT--SLLAAG 76
Query: 146 SWDRTVKVWNLSNCKLR-------ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 198
S+D TV +W R A + GH V VA S DG A+ +D + +W+
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Query: 199 AEGKRLYS 206
E Y
Sbjct: 137 DESGEEYE 144
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 54/240 (22%)
Query: 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV 66
L + H + V +A D + T SRDKS+ +W + + Y L HS V
Sbjct: 99 LLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISV-LQEHSQDV 156
Query: 67 QDVVLSSDGQFV--------------------------GHTKDVLSVAFSIDN--RQIVS 98
+ V+ + GH V S F ++ S
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216
Query: 99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW----------- 147
S D T+++W +G+ + D EWV C P+ + + + +W
Sbjct: 217 GSDDSTVRVWKYMGD------DEDDQQEWV-CEAILPDVHKRQVYNVAWGFNGLIASVGA 269
Query: 148 DRTVKVWNLSNCKLRA----TLAGHTGYVNTVA-VSPDG-SLCASGGKDGVILLWDLAEG 201
D + V+ + + + L +N V + +G ++ A+GG DG++ W L +
Sbjct: 270 DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTE---WVSCVRFSPN 136
HT VL V +S D ++ +AS D+T K+W+ I + DA + W+ +S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS-- 142
Query: 137 TLQPTIVSASWDRTVKVWN 155
+++ SWD+T+K W+
Sbjct: 143 ----CVMTGSWDKTLKFWD 157
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 128 VSCVRFSPNTLQPT-IVSASWDRTVKVWNL--SNCKLRATLAGHTGYVNTVAVSPDGSLC 184
+ C+ FSP TL +++ SW V+ W + S + HTG V V S DGS
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 185 ASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT---EQSIKIWDLESK 241
+ D +WDL+ + + A + + + + C T ++++K WD S
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161
Query: 242 SIVEDLKV 249
+ + L++
Sbjct: 162 NPMMVLQL 169
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 32/157 (20%)
Query: 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY-GVARRRLTGHSHFVQD 68
++AH V + + +TAS DK+I +W K KT+ G+ H+ V+
Sbjct: 137 NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI-------HNDVVRH 189
Query: 69 VVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWV 128
+ + DG F+ S S D IKL + ++ + H +V
Sbjct: 190 LAVVDDGHFI-------------------SCSNDGLIKLVDX--HTGDVLRTYEGHESFV 228
Query: 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL 165
C++ PN IVS DRTV++W+ N L+ +
Sbjct: 229 YCIKLLPN---GDIVSCGEDRTVRIWSKENGSLKQVI 262
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 51/205 (24%)
Query: 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136
+GH +V S++F + ++S S D+T K+W G Y +Q +A V FS N
Sbjct: 100 LIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWKE-GSLVYNLQAHNASVWDAKVVSFSEN 156
Query: 137 TLQPTIVSASWDRTVKVWN----------LSNCKLR------------------------ 162
++AS D+T+K+W + N +R
Sbjct: 157 KF----LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDX 212
Query: 163 ------ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG--KRLYSLDAGAVIH 214
T GH +V + + P+G + S G+D + +W G K++ +L A ++
Sbjct: 213 HTGDVLRTYEGHESFVYCIKLLPNGDI-VSCGEDRTVRIWSKENGSLKQVITLPAISIWS 271
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLE 239
C S N + +++ ++I+ E
Sbjct: 272 VDCXS-NGDIIVGSSDNLVRIFSQE 295
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYV---NTVAVSPDGSLCASGGKDGVILLWDL 198
++S SWD+T KVW + L L H V V+ S + L AS D I LW
Sbjct: 117 VISGSWDKTAKVWKEGS--LVYNLQAHNASVWDAKVVSFSENKFLTASA--DKTIKLWQN 172
Query: 199 AEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIV 244
+ + +S V+ L + +++ + + IK+ D + ++
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVL 218
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVI 193
+ S S D TV++W+ + L + G++N+V + L GGKD I
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXI 83
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 24/204 (11%)
Query: 26 DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85
D S +I A DKS++V+ + K K R+R S + ++ D V D
Sbjct: 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC-FSKRPNAISIAEDDTTVI-IADKF 170
Query: 86 SVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL-QPTIVS 144
+SID N++ E K+T + H ++ V ++ I++
Sbjct: 171 GDVYSID---------------INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT 215
Query: 145 ASWDRTVKVWNLSNCKLRAT-LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203
+ D +K+ + C + L GH +V+++ D L ++GG D I WD GK
Sbjct: 216 SDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDK-IFAWDWKTGKN 274
Query: 204 LYSLDAGAVIHALC----FSPNRY 223
L + D ++I +P R+
Sbjct: 275 LSTFDYNSLIKPYLNDQHLAPPRF 298
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 92 DNRQIVSASRDRTIKLWNTLGECKYTIQEG--DAHTEWVSCVRFSPNT-LQPTIVSASWD 148
++R+ V+ D +K+W + + + E + H++WV V +SP L+ + S S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 149 RTVKVWNLSNCK--LRATLAGHTGYVNTV---AVSPDGSLCASGGKDGVILLW-DLAEGK 202
RT +W N + + TL + + + + S G++ A G D + LW + EGK
Sbjct: 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
+++ + S D+TIK++ GE I H V V ++ + S S+D V +
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81
Query: 154 WNLSNCKLR--ATLAGHTGYVNTVAVSPD--GSLCASGGKDGVILLWDLAEG 201
W N + A A H+ VN+V +P G L DG + + + E
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 92 DNRQIVSASRDRTIKLWNTLGECKYTIQEG--DAHTEWVSCVRFSPNT-LQPTIVSASWD 148
++R+ V+ D +K+W + + + E + H++WV V +SP L+ + S S D
Sbjct: 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230
Query: 149 RTVKVWNLSNCK--LRATLAGHTGYVNTV---AVSPDGSLCASGGKDGVILLW-DLAEGK 202
RT +W N + + TL + + + + S G++ A G D + LW + EGK
Sbjct: 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
+++ + S D+TIK++ GE I H V V ++ + S S+D V +
Sbjct: 24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83
Query: 154 WNLSNCKLR--ATLAGHTGYVNTVAVSPD--GSLCASGGKDGVILLWDLAE 200
W N + A A H+ VN+V +P G L DG + + + E
Sbjct: 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 142 IVSASWDRTVKVWNLSN----CKLRA---TLAGHTGYVNTVAVSPDG-SLCASGGKDGVI 193
I S S D TV VW + + LR TL GHT V VA P ++ S G D VI
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 194 LLWDLAEGKRLYSLDAGAVIHA 215
L+WD+ G + +L G +H
Sbjct: 157 LVWDVGTGAAVLTL--GPDVHP 176
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 31/242 (12%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS 72
HT V IA N ++I + S D +++VW + G +++ V++
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPD------------GGLVLPLREPVIT 126
Query: 73 SDGQFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCV 131
+ GHTK V VA+ + + +SA D I +W+ D H + + V
Sbjct: 127 LE----GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 132 RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTG--YVNTVAVSPDGSLCASG- 187
+S + I ++ D+ V+V + A H G V+ V VS +G + +G
Sbjct: 183 DWSRDGA--LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGF 239
Query: 188 --GKDGVILLWD---LAEGKRLYSLDAGAVIHALCFSP--NRYWLCAATEQSIKIWDLES 240
+ + LWD L E L LD + + F P N +LC + SI+ +++ S
Sbjct: 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 241 KS 242
++
Sbjct: 300 EA 301
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 29/144 (20%)
Query: 165 LAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------I 213
+ GHT V +A P + ++ ASG +D +++W++ +G + L + I
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 214 HALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIY 273
A + L A + I +WD+ + + V L D+ IY
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPD----------------TIY 180
Query: 274 CTSLNWSVDGSTLFSGYTDGVIRV 297
S++WS DG+ + + D +RV
Sbjct: 181 --SVDWSRDGALICTSCRDKRVRV 202
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 92 DNRQIVSASRDRTIKLWNTLGECKYTIQEG--DAHTEWVSCVRFSPNT-LQPTIVSASWD 148
++R+ V+ D +K+W + + + E + H++WV V +SP L+ + S S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 149 RTVKVWNLSNCK--LRATLAGHTGYVNTV---AVSPDGSLCASGGKDGVILLW-DLAEGK 202
RT +W N + + TL + + + + S G++ A G D + LW + EGK
Sbjct: 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
+++ + S D+TIK++ GE I H V V ++ + S S+D V +
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81
Query: 154 WNLSNCKLR--ATLAGHTGYVNTVAVSPD--GSLCASGGKDGVILLWDLAE 200
W N + A A H+ VN+V +P G L DG + + + E
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 92 DNRQIVSASRDRTIKLWNTLGECKYTIQEG--DAHTEWVSCVRFSPNT-LQPTIVSASWD 148
++R+ V+ D +K+W + + + E + H++WV V +SP L+ + S S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228
Query: 149 RTVKVWNLSNCK--LRATLAGHTGYVNTV---AVSPDGSLCASGGKDGVILLW-DLAEGK 202
RT +W N + + TL + + + + S G++ A G D + LW + EGK
Sbjct: 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL 138
H + + +++ + S D+TIK++ GE I H V V ++
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 139 QPTIVSASWDRTVKVWNLSNCKLR--ATLAGHTGYVNTVAVSPD--GSLCASGGKDGVIL 194
+ S S+D V +W N + A A H+ VN+V +P G + DG +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 195 LWDLAE 200
+ + E
Sbjct: 127 VVEFKE 132
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 13/130 (10%)
Query: 75 GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN----TLGECKYTIQEGDAHTEWVSC 130
G+ +GH + + F+ N+ ++SAS D T+++W+ C Y + WV
Sbjct: 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG- 299
Query: 131 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD 190
++S S D +V++W+L L A + +S DG A D
Sbjct: 300 --------DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351
Query: 191 GVILLWDLAE 200
G + ++DL +
Sbjct: 352 GQVNVYDLKK 361
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 31/186 (16%)
Query: 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-------ECKYT--------IQEGDA- 123
H ++SV ++ D I+S + LWN + E K T GD
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 124 ---HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD 180
EWV +F V + V+ ++ L GH G ++ + +
Sbjct: 208 LGVDVEWVDDDKF---------VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258
Query: 181 GSLCASGGKDGVILLWDLAEG--KRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL 238
L S DG + +W G + + + +++ A ++ C + + S+++W L
Sbjct: 259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISC-SMDGSVRLWSL 317
Query: 239 ESKSIV 244
+ +++
Sbjct: 318 KQNTLL 323
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 91 IDNRQIVSASRDRTIKLWN-TLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW 147
+D+++ + D TI++W+ T +C K+T+ + + V V T I+S S
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA----TGNGRIISLSL 317
Query: 148 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
D T+ + L + ++ T++GH + + V+P SG DG I+ W
Sbjct: 318 DGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEW 362
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 15/159 (9%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD---AHTEWVSCVRFSP 135
GH V V + R + + S D+ IK++ L + + D AH + + ++
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFK-LDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 136 NTLQPTIVSASWDRTVKVW----NLSNCKLR-----ATLAGHTGYVNTVAVSPD--GSLC 184
I SAS+D+TVK+W + C R TL G + +V +P G
Sbjct: 66 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 125
Query: 185 ASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY 223
A G DG++ L+D E L S + + L P +
Sbjct: 126 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 164
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 15/159 (9%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD---AHTEWVSCVRFSP 135
GH V V + R + + S D+ IK++ L + + D AH + + ++
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFK-LDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 136 NTLQPTIVSASWDRTVKVW----NLSNCKLR-----ATLAGHTGYVNTVAVSPD--GSLC 184
I SAS+D+TVK+W + C R TL G + +V +P G
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 185 ASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY 223
A G DG++ L+D E L S + + L P +
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 142 IVSASWDRTVKVWNLSN----CKLRA---TLAGHTGYVNTVAVSPDG-SLCASGGKDGVI 193
I S S D TV VW + + LR TL GHT V VA P ++ S G D VI
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 194 LLWDLAEGKRLYSLDAGAVIHA 215
L+WD+ G + +L G +H
Sbjct: 157 LVWDVGTGAAVLTL--GPDVHP 176
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 31/242 (12%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS 72
HT V IA N ++I + S D +++VW + G +++ V++
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD------------GGLVLPLREPVIT 126
Query: 73 SDGQFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCV 131
+ GHTK V VA+ + + +SA D I +W+ D H + + V
Sbjct: 127 LE----GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 132 RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTG--YVNTVAVSPDGSLCASG- 187
+S + I ++ D+ V+V + A H G V+ V VS +G + +G
Sbjct: 183 DWSRDGA--LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGF 239
Query: 188 --GKDGVILLWD---LAEGKRLYSLDAGAVIHALCFSP--NRYWLCAATEQSIKIWDLES 240
+ + LWD L E L LD + + F P N +LC + SI+ +++ S
Sbjct: 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 241 KS 242
++
Sbjct: 300 EA 301
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 29/144 (20%)
Query: 165 LAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------I 213
+ GHT V +A P + ++ ASG +D +++W++ +G + L + I
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 214 HALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIY 273
A + L A + I +WD+ + + V L D+ IY
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD----------------TIY 180
Query: 274 CTSLNWSVDGSTLFSGYTDGVIRV 297
S++WS DG+ + + D +RV
Sbjct: 181 --SVDWSRDGALICTSCRDKRVRV 202
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 92 DNRQIVSASRDRTIKLWNTLGECKYTIQEG--DAHTEWVSCVRFSPNT-LQPTIVSASWD 148
++R+ V+ D +K+W + + + E + H++WV V +SP L+ S S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQD 228
Query: 149 RTVKVWNLSNCK--LRATLAGHTGYVNTV---AVSPDGSLCASGGKDGVILLW-DLAEGK 202
RT +W N + + TL + + + + S G++ A G D + LW + EGK
Sbjct: 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ 139
H + + ++ + S D+TIK++ GE I H V V ++
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 140 PTIVSASWDRTVKVWNLSNCKLR--ATLAGHTGYVNTVAVSP 179
+ S S+D V +W N + A A H+ VN+V +P
Sbjct: 68 TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 41/219 (18%)
Query: 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQD 68
G + H+ + A T D S++ + + + R FV+D
Sbjct: 154 GEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQ--GPPFKFSASDRTHHKQGSFVRD 211
Query: 69 VVLSSD---------------------GQFVGHTKD----VLSVAFSI---DNRQIVSAS 100
V S D G+F+ + +D V F++ D+++ +
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG 271
Query: 101 RDRTIKLWN-TLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS 157
D TI++W+ T +C K+T+ + + V V T I+S S D T+ + L
Sbjct: 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA----TGNGRIISLSLDGTLNFYELG 327
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
+ ++ T++GH + + V+P SG DG I W
Sbjct: 328 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD---AHTEWVSCVRFSP 135
GH V V + R + + S D+ IK++ L + + D AH + + ++
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFK-LDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 136 NTLQPTIVSASWDRTVKVW----NLSNCKLR-----ATLAGHTGYVNTVAVSPD--GSLC 184
I SAS+D+TVK+W + C R TL G + +V +P G
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 185 ASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY 223
A G DG++ L+D E L S + L P +
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANH 166
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 148 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKR 203
+ T +V L K R H G +NT+ + P +G SGG DGVI+L+DL R
Sbjct: 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR 78
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 42/193 (21%)
Query: 27 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86
++ M ++S DK++ VW T +T V T +SH + V TK L
Sbjct: 111 DTGMFTSSSFDKTLKVWD-TNTLQTADVFNFEETVYSHHMSPV----------STKHCL- 158
Query: 87 VAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
+ +R ++L + G C + +Q H + + V +SP + +A
Sbjct: 159 ---------VAVGTRGPKVQLCDLKSGSCSHILQ---GHRQEILAVSWSPR-YDYILATA 205
Query: 146 SWDRTVKVWNL---SNC-------------KLRATLAGHTGYVNTVAVSPDGSLCASGGK 189
S D VK+W++ S C + + H G VN + + DG + G
Sbjct: 206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265
Query: 190 DGVILLWDLAEGK 202
D + LW+ + G+
Sbjct: 266 DNRMRLWNSSNGE 278
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 79 GHTKDVLSVAF-SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT 137
GH K +LS+ + D ++S+ RD T+ LWN E + + A W +F+P
Sbjct: 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP--ESAEQLSQFPARGNWCFKTKFAPEA 317
Query: 138 LQPTIVS-ASWDRTVKVWNLSN 158
P + + AS+D ++V L N
Sbjct: 318 --PDLFACASFDNKIEVQTLQN 337
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 148 DRTVKVWNL--SNCKLRATLAGHT-GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 204
D ++ +W+L +N L+ GH G ++ D L S G+D +LLW+ ++L
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298
Query: 205 YSLDA-GAVIHALCFSPNR--YWLCAATEQSIKIWDLES 240
A G F+P + CA+ + I++ L++
Sbjct: 299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 163 ATLAGHTGYVNTVAV-SPDGSLCASGGKDGVILLWD-------------LAEGKRLYSLD 208
A + H+ V TV + ++ ASGG +G I +WD L G+ + S+D
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 209 AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIV 244
+ A S + A + IWDL++K V
Sbjct: 167 E-VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 39/270 (14%)
Query: 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL-------TGHSHFV 66
H D++ AI ++ T S ++ + +T+E++T V +L HS +
Sbjct: 77 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 136
Query: 67 QDVVLSSDGQFVGH---TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDA 123
S+D + + H DV + S T+ W+ E + T++
Sbjct: 137 LKWGASND-RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMT 194
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS------NCKLRATLAGHTGYVNTVAV 177
+++ + V S L I + + TV++ LS N + + ++ ++ + +V
Sbjct: 195 PSQFATSVDISERGL---IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 251
Query: 178 SPDGSLCA---SGGKDGVILLWDLAEGKRLYSLDA---------GAVIH-----ALCFSP 220
SP GSL A G I L++ G+R+ SL G H +L F+
Sbjct: 252 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 311
Query: 221 NRYWLCAAT-EQSIKIWDLESKSIVEDLKV 249
+ LC+A + ++ WD+++K + L +
Sbjct: 312 SGETLCSAGWDGKLRFWDVKTKERITTLNM 341
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 5 LVLKGTMRAHTDMVTAIATPIDNSD--MIVTASRDKSIIVWHLTKEEKTYGV-ARRRLTG 61
L L+GT+ + + AT +D S+ +I T + ++ + L+ Y ++ +
Sbjct: 183 LELQGTVESPM-TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN 241
Query: 62 HSHFVQDVVLSSDGQFVGHTKDVLSVA----FSIDNRQIVSASRDRTIKLWNTLGECKYT 117
+S+ ++ V S G + D S + + + + + T +LGE
Sbjct: 242 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF--- 298
Query: 118 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH 168
AH+ WV + F N T+ SA WD ++ W++ + TL H
Sbjct: 299 -----AHSSWVMSLSF--NDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 39/270 (14%)
Query: 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL-------TGHSHFV 66
H D++ AI ++ T S ++ + +T+E++T V +L HS +
Sbjct: 67 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 126
Query: 67 QDVVLSSDGQFVGH---TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDA 123
S+D + + H DV + S T+ W+ E + T++
Sbjct: 127 LKWGASND-RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMT 184
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS------NCKLRATLAGHTGYVNTVAV 177
+++ + V S L I + + TV++ LS N + + ++ ++ + +V
Sbjct: 185 PSQFATSVDISERGL---IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241
Query: 178 SPDGSLCA---SGGKDGVILLWDLAEGKRLYSLDA---------GAVIH-----ALCFSP 220
SP GSL A G I L++ G+R+ SL G H +L F+
Sbjct: 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 301
Query: 221 NRYWLCAAT-EQSIKIWDLESKSIVEDLKV 249
+ LC+A + ++ WD+++K + L +
Sbjct: 302 SGETLCSAGWDGKLRFWDVKTKERITTLNM 331
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 5 LVLKGTMRAHTDMVTAIATPIDNSD--MIVTASRDKSIIVWHLTKEEKTYGV-ARRRLTG 61
L L+GT+ + + AT +D S+ +I T + ++ + L+ Y ++ +
Sbjct: 173 LELQGTVESPM-TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN 231
Query: 62 HSHFVQDVVLSSDGQFVGHTKDVLSVA----FSIDNRQIVSASRDRTIKLWNTLGECKYT 117
+S+ ++ V S G + D S + + + + + T +LGE
Sbjct: 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF--- 288
Query: 118 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH 168
AH+ WV + F N T+ SA WD ++ W++ + TL H
Sbjct: 289 -----AHSSWVMSLSF--NDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNR--YW 224
H V+TV+V G+ SG KD I +WDLA+ L S A A + + SP++ +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 225 LCAATEQSIKIWD 237
L + + I +WD
Sbjct: 186 LSCSEDNRILLWD 198
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 36/219 (16%)
Query: 31 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90
I+ AS ++ +W L E +T V++ H V V + S G
Sbjct: 96 ILVASDSGAVELWEL-DENETLIVSKFCKYEHDDIVSTVSVLSSGT-------------- 140
Query: 91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150
Q VS S+D IK+W+ + + AH V+CV SP+ +S S D
Sbjct: 141 ----QAVSGSKDICIKVWDLAQQ--VVLSSYRAHAAQVTCVAASPHK-DSVFLSCSEDNR 193
Query: 151 VKVWNLSNCKLRATLAG--HTGYVNT-VAVSPDGS-LCASGGKDGVILLWDLAEGKRLYS 206
+ +W+ + C A+ G GY+ T +A P S + G ++G + L D + S
Sbjct: 194 ILLWD-TRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252
Query: 207 LDAGAVIHALC-----FSPNRYWLCAATEQSIKIWDLES 240
+ +H+ C FSP+ A+ + + L+S
Sbjct: 253 ----SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS 287
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 25/107 (23%)
Query: 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
+V K H D+V+ ++ + + V+ S+D I VW L
Sbjct: 117 IVSKFCKYEHDDIVSTVSV-LSSGTQAVSGSKDICIKVWDL------------------- 156
Query: 65 FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKLWNT 110
Q VVLSS + H V VA S + +S S D I LW+T
Sbjct: 157 -AQQVVLSS---YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 94 RQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQP--TIVSASWDRT 150
++ S D IKLW + ++ ++ +AH++WV V ++P+ P TI S S D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 151 VKVWNL----SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
V +W SN L V V+ S ++ A G D + LW
Sbjct: 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNR 222
TL GH+ V +A DG ASGG D V+ +WD + + A + A+ + P +
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 223 YWLCA----ATEQSIKIWD 237
L A ++ I W+
Sbjct: 272 SNLLATGGGTMDKQIHFWN 290
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 102 DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161
D+ I WN + + DA ++ V+ + +SP++ + D + +W+ S+ L
Sbjct: 283 DKQIHFWNAATGAR--VNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339
Query: 162 --RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 204
+ + H V A+SPDG + ++ D + W + +G +
Sbjct: 340 TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 142 IVSASWDRTVKVWNLSNCKLRATL---AGHTGYVNTVAVSPDGS 182
+ +AS D+TVK+W+L + +A+ H VN SPDG+
Sbjct: 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP-NTLQPTIVSASWDRTVKVW 154
+ S+ I LWN + K T +G ++ ++F+P NT Q ++S + T ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ--FYASSMEGTTRLQ 192
Query: 155 NLSNCKLRATLAGHTGYV--NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAG 210
+ LR + T + ++ VS + +G G ++L ++ +GK L++L
Sbjct: 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKK 251
Query: 211 AVIHALCFSPNRYWLCA--ATEQSIKIWDLE 239
V H + +P W A + +Q++KIWDL
Sbjct: 252 KVTH-VALNPCCDWFLATASVDQTVKIWDLR 281
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 164 TLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAE--GKR--LYSLDAGAVIHALCF 218
L H V VA++P A+ D + +WDL + GK LYSL ++A CF
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 219 SPNRYWLCAATEQS 232
SP+ L ++S
Sbjct: 305 SPDGARLLTTDQKS 318
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 142 IVSASWDRTVKVWNLSNCKLRATL---AGHTGYVNTVAVSPDGS 182
+ +AS D+TVK+W+L + +A+ H VN SPDG+
Sbjct: 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP-NTLQPTIVSASWDRTVKVW 154
+ S+ I LWN + K T +G ++ ++F+P NT Q ++S + T ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ--FYASSMEGTTRLQ 192
Query: 155 NLSNCKLRATLAGHTG--YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAG 210
+ LR + T + ++ VS + +G G ++L ++ +GK L++L
Sbjct: 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKK 251
Query: 211 AVIHALCFSPNRYWLCA--ATEQSIKIWDLE 239
V H + +P W A + +Q++KIWDL
Sbjct: 252 KVTH-VALNPCCDWFLATASVDQTVKIWDLR 281
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 164 TLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAE--GKR--LYSLDAGAVIHALCF 218
L H V VA++P A+ D + +WDL + GK LYSL ++A CF
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 219 SPNRYWLCAATEQS 232
SP+ L ++S
Sbjct: 305 SPDGARLLTTDQKS 318
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 142 IVSASWDRTVKVWNLSNCKLRATL---AGHTGYVNTVAVSPDGS 182
+ +AS D+TVK+W+L + +A+ H VN SPDG+
Sbjct: 267 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 310
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP-NTLQPTIVSASWDRTVKVW 154
+ S+ I LWN + K T +G ++ ++F+P NT Q ++S + T ++
Sbjct: 136 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ--FYASSMEGTTRLQ 193
Query: 155 NLSNCKLRATLAGHTGYV--NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAG 210
+ LR + T + ++ VS + +G G ++L ++ +GK L++L
Sbjct: 194 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKK 252
Query: 211 AVIHALCFSPNRYWLCA--ATEQSIKIWDLE 239
V H + +P W A + +Q++KIWDL
Sbjct: 253 KVTH-VALNPCCDWFLATASVDQTVKIWDLR 282
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 164 TLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAE--GKR--LYSLDAGAVIHALCF 218
L H V VA++P A+ D + +WDL + GK LYSL ++A CF
Sbjct: 246 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 305
Query: 219 SPNRYWLCAATEQS 232
SP+ L ++S
Sbjct: 306 SPDGARLLTTDQKS 319
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 66 VQDVVLSSDGQFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEG-DA 123
+ + + +VGH + + F D ++S S+D ++LWN + I G +
Sbjct: 100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171
H + V + + L I+S D ++K+W +++ ++ + Y
Sbjct: 160 HRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 120 EGDAHTEWVSCV-RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS 178
+ DA + +C + NT P + A +++ N + GH +N +
Sbjct: 65 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 124
Query: 179 P-DGSLCASGGKDGVILLWDL-----------AEGKRLYSLDAGAVIHALCFSPNRYWLC 226
P D +L S KD + LW++ EG R L A + +
Sbjct: 125 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG------EKIMS 178
Query: 227 AATEQSIKIWDLESKSIVEDLK 248
+ S+K+W + SK ++ +K
Sbjct: 179 CGMDHSLKLWRINSKRMMNAIK 200
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS 72
H + + + + +++++ S+D ++ +W++ D +++
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ--------------------TDTLVA 152
Query: 73 SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLW 108
G GH +VLS + + +I+S D ++KLW
Sbjct: 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 66 VQDVVLSSDGQFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEG-DA 123
+ + + +VGH + + F D ++S S+D ++LWN + I G +
Sbjct: 95 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 154
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171
H + V + + L I+S D ++K+W +++ ++ + Y
Sbjct: 155 HRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 200
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 120 EGDAHTEWVSCV-RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS 178
+ DA + +C + NT P + A +++ N + GH +N +
Sbjct: 60 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 119
Query: 179 P-DGSLCASGGKDGVILLWDL-----------AEGKRLYSLDAGAVIHALCFSPNRYWLC 226
P D +L S KD + LW++ EG R L A + +
Sbjct: 120 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG------EKIMS 173
Query: 227 AATEQSIKIWDLESKSIVEDLK 248
+ S+K+W + SK ++ +K
Sbjct: 174 CGMDHSLKLWRINSKRMMNAIK 195
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS 72
H + + + + +++++ S+D ++ +W++ D +++
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ--------------------TDTLVA 147
Query: 73 SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLW 108
G GH +VLS + + +I+S D ++KLW
Sbjct: 148 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 66 VQDVVLSSDGQFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEG-DA 123
+ + + +VGH + + F D ++S S+D ++LWN + I G +
Sbjct: 136 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 195
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171
H + V + + L I+S D ++K+W +++ ++ + Y
Sbjct: 196 HRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 241
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 120 EGDAHTEWVSCV-RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS 178
+ DA + +C + NT P + A +++ N + GH +N +
Sbjct: 101 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 160
Query: 179 P-DGSLCASGGKDGVILLWDL-----------AEGKRLYSLDAGAVIHALCFSPNRYWLC 226
P D +L S KD + LW++ EG R L A + +
Sbjct: 161 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG------EKIMS 214
Query: 227 AATEQSIKIWDLESKSIVEDLK 248
+ S+K+W + SK ++ +K
Sbjct: 215 CGMDHSLKLWRINSKRMMNAIK 236
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS 72
H + + + + +++++ S+D ++ +W++ D +++
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ--------------------TDTLVA 188
Query: 73 SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLW 108
G GH +VLS + + +I+S D ++KLW
Sbjct: 189 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 66 VQDVVLSSDGQFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEG-DA 123
+ + + +VGH + + F D ++S S+D ++LWN + I G +
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 158
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171
H + V + + L I+S D ++K+W +++ ++ + Y
Sbjct: 159 HRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 204
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 120 EGDAHTEWVSCV-RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS 178
+ DA + +C + NT P + A +++ N + GH +N +
Sbjct: 64 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 123
Query: 179 P-DGSLCASGGKDGVILLWDL-----------AEGKRLYSLDAGAVIHALCFSPNRYWLC 226
P D +L S KD + LW++ EG R L A + +
Sbjct: 124 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG------EKIMS 177
Query: 227 AATEQSIKIWDLESKSIVEDLK 248
+ S+K+W + SK ++ +K
Sbjct: 178 CGMDHSLKLWRINSKRMMNAIK 199
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS 72
H + + + + +++++ S+D ++ +W++ D +++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ--------------------TDTLVA 151
Query: 73 SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLW 108
G GH +VLS + + +I+S D ++KLW
Sbjct: 152 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 66 VQDVVLSSDGQFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEG-DA 123
+ + + +VGH + + F D ++S S+D ++LWN + I G +
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 158
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171
H + V + + L I+S D ++K+W +++ ++ + Y
Sbjct: 159 HRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 204
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 120 EGDAHTEWVSCV-RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS 178
+ DA + +C + NT P + A +++ N + GH +N +
Sbjct: 64 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 123
Query: 179 P-DGSLCASGGKDGVILLWDL-----------AEGKRLYSLDAGAVIHALCFSPNRYWLC 226
P D +L S KD + LW++ EG R L A + +
Sbjct: 124 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG------EKIMS 177
Query: 227 AATEQSIKIWDLESKSIVEDLK 248
+ S+K+W + SK ++ +K
Sbjct: 178 CGMDHSLKLWRINSKRMMNAIK 199
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS 72
H + + + + +++++ S+D ++ +W++ D +++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ--------------------TDTLVA 151
Query: 73 SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLW 108
G GH +VLS + + +I+S D ++KLW
Sbjct: 152 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 20/187 (10%)
Query: 27 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86
+ + IV AS + V+ +T V ++ T H H S G
Sbjct: 103 DQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHTGPGSPSYSSAPCTG------- 155
Query: 87 VAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
+N +IV+ D I L+ E TI D+ T + V F P I++
Sbjct: 156 --VVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSST--LHAVTF---LRTPEILTV 208
Query: 146 SWDRTVKVWNLSNCKLRAT----LAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAE 200
+ +K+W+ + L G ++ V P+ + A+GG+DG++ +WD+ +
Sbjct: 209 NSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ 268
Query: 201 GKRLYSL 207
G SL
Sbjct: 269 GTMPVSL 275
>pdb|3LRV|A Chain A, The Prp19 Wd40 Domain Contains A Conserved Protein
Interaction Region Essential For Its Function
Length = 343
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 180 DGSLCASGGKDGVILLWDLA---EGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIW 236
D L A DG++ +++L+ + + +D A I + F+ N YW+ +Q++ +
Sbjct: 181 DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCF 240
Query: 237 DL 238
DL
Sbjct: 241 DL 242
>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Protein Kinase B Beta (PkbAKT)
Length = 111
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 70 VLSSDGQFVGHTKDVLSV--------AFSIDNRQIVSASRDRTIKL------WNTLGECK 115
+L SDG F+G+ + + FS+ Q++ R R W T+ E
Sbjct: 28 LLKSDGSFIGYKERPEAPDQTLPPLNNFSVAECQLMKTERPRPNTFVIRCLQWTTVIERT 87
Query: 116 YTIQEGDAHTEWVSCVRFSPNTLQ 139
+ + D EW+ ++ N+L+
Sbjct: 88 FHVDSPDEREEWMRAIQMVANSLK 111
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 11 MRAHTDMVTAIATPIDNS-DMIVTASRDKSII 41
MRA+ D++T ATPI + +M ++ RD SII
Sbjct: 748 MRANVDILTLTATPIPRTLNMAMSGMRDLSII 779
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 22/164 (13%)
Query: 95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154
Q + ++ D+TIKLW I E D E + PT V+ +
Sbjct: 109 QFLLSTNDKTIKLW--------KISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPM 160
Query: 155 NL--SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL----- 207
+L R HT ++N+++++ D S D I LW L R +++
Sbjct: 161 DLMVEASPRRIFANAHTYHINSISINSDYETYLSAD-DLRINLWHLEITDRSFNIVDIKP 219
Query: 208 ----DAGAVIHALCFSPN--RYWLCAATEQSIKIWDLESKSIVE 245
+ VI A F PN ++ ++++ +I++ D+ + ++ +
Sbjct: 220 ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263
>pdb|3O98|A Chain A, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
pdb|3O98|B Chain B, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
Length = 619
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 37 DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGH---TKDVLSVAFSIDN 93
D +I+ W + E+ Y + + + G + L + GQF G KD L A+ N
Sbjct: 182 DTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQAN 241
Query: 94 RQIVS 98
Q+++
Sbjct: 242 GQVIN 246
>pdb|2IO7|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO7|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO8|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO8|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO9|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IO9|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IOA|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOA|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOB|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
pdb|2IOB|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
Length = 619
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 37 DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGH---TKDVLSVAFSIDN 93
D +I+ W + E+ Y + + + G + L + GQF G KD L A+ N
Sbjct: 182 DTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQAN 241
Query: 94 RQIVS 98
Q+++
Sbjct: 242 GQVIN 246
>pdb|1HWM|A Chain A, Ebulin,Orthorhombic Crystal Form Model
pdb|1HWN|A Chain A, Ebulin Complexed With Galactose, Trigonal Crystal Form
pdb|1HWO|A Chain A, Ebulin Complexed With Lactose, Trigonal Crystal Form
pdb|1HWP|A Chain A, Ebulin Complexed With Pteroic Acid, Trigonal Crystal Form
Length = 254
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 61 GHSHFVQDVV-LSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKL 107
G+S+F +D L F+G T+ LS + DN + + +R +I+L
Sbjct: 85 GNSYFFKDATELQKSNLFLGTTQHTLSFTGNYDNLETAAGTRRESIEL 132
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS---LDAGAVIHALCFSPNRYWLCAA 228
VN++ SP + G DG+I W+L K++ + + +V+ C S N LC A
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDN--ILCLA 310
Query: 229 T 229
T
Sbjct: 311 T 311
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS---LDAGAVIHALCFSPNRYWLCAA 228
VN++ SP + G DG+I W+L K++ + + +V+ C S N LC A
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDN--ILCLA 310
Query: 229 T 229
T
Sbjct: 311 T 311
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS---LDAGAVIHALCFSPNRYWLCAA 228
VN++ SP + G DG+I W+L K++ + + +V+ C S N LC A
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDN--ILCLA 310
Query: 229 T 229
T
Sbjct: 311 T 311
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS---LDAGAVIHALCFSPNRYWLCAA 228
VN++ SP + G DG+I W+L K++ + + +V+ C S N LC A
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDN--ILCLA 310
Query: 229 T 229
T
Sbjct: 311 T 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,860,876
Number of Sequences: 62578
Number of extensions: 330276
Number of successful extensions: 1913
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 431
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)