Query 048118
Match_columns 303
No_of_seqs 184 out of 2129
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 06:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0279 G protein beta subunit 100.0 1.8E-54 3.8E-59 330.2 30.6 291 1-303 1-315 (315)
2 KOG0272 U4/U6 small nuclear ri 100.0 1E-42 2.2E-47 279.3 19.4 249 4-299 206-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.2E-40 4.7E-45 263.2 25.5 259 10-299 110-479 (480)
4 KOG0286 G-protein beta subunit 100.0 1.5E-37 3.2E-42 239.1 29.1 265 5-299 45-343 (343)
5 KOG0645 WD40 repeat protein [G 100.0 5.9E-36 1.3E-40 228.1 28.4 279 3-301 2-311 (312)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-37 2.8E-42 250.1 19.0 247 6-300 166-417 (459)
7 KOG0315 G-protein beta subunit 100.0 2E-35 4.4E-40 222.7 28.5 246 27-301 9-288 (311)
8 KOG0263 Transcription initiati 100.0 4.1E-36 9E-41 258.3 21.6 262 15-301 378-649 (707)
9 KOG0263 Transcription initiati 100.0 5E-35 1.1E-39 251.7 22.5 255 7-289 443-703 (707)
10 KOG0284 Polyadenylation factor 100.0 8.2E-35 1.8E-39 233.1 17.2 260 13-301 94-380 (464)
11 KOG0295 WD40 repeat-containing 100.0 7.8E-33 1.7E-37 218.9 26.8 264 6-299 99-404 (406)
12 KOG0273 Beta-transducin family 100.0 4.5E-33 9.7E-38 226.9 25.3 237 16-302 236-483 (524)
13 KOG0291 WD40-repeat-containing 100.0 5.1E-32 1.1E-36 232.0 29.1 265 8-301 343-612 (893)
14 KOG0285 Pleiotropic regulator 100.0 2.4E-32 5.3E-37 215.9 25.0 272 6-300 142-438 (460)
15 KOG0283 WD40 repeat-containing 100.0 8.9E-33 1.9E-37 239.6 24.5 272 4-301 255-576 (712)
16 KOG0282 mRNA splicing factor [ 100.0 1.1E-33 2.4E-38 231.1 17.0 246 7-299 206-503 (503)
17 cd00200 WD40 WD40 domain, foun 100.0 8.5E-31 1.8E-35 215.7 33.8 262 8-299 2-289 (289)
18 KOG0271 Notchless-like WD40 re 100.0 6.9E-33 1.5E-37 220.6 19.5 221 76-300 110-396 (480)
19 KOG0296 Angio-associated migra 100.0 3.3E-31 7.2E-36 209.8 28.5 264 10-302 59-399 (399)
20 KOG0318 WD40 repeat stress pro 100.0 4.3E-31 9.4E-36 218.1 29.6 269 4-302 48-351 (603)
21 KOG0266 WD40 repeat-containing 100.0 2.8E-31 6.1E-36 231.9 30.0 252 8-301 151-409 (456)
22 KOG0319 WD40-repeat-containing 100.0 4.4E-32 9.5E-37 231.9 23.0 248 10-299 360-617 (775)
23 KOG0772 Uncharacterized conser 100.0 3.3E-32 7.1E-37 224.2 21.1 265 11-298 163-484 (641)
24 KOG0318 WD40 repeat stress pro 100.0 3.4E-30 7.3E-35 212.8 31.3 270 7-302 139-561 (603)
25 KOG0291 WD40-repeat-containing 100.0 3E-30 6.6E-35 221.2 30.8 270 3-300 133-507 (893)
26 KOG0279 G protein beta subunit 100.0 1.1E-30 2.4E-35 200.1 23.0 205 75-302 9-223 (315)
27 KOG0316 Conserved WD40 repeat- 100.0 6E-31 1.3E-35 197.2 21.0 243 10-301 12-257 (307)
28 KOG0293 WD40 repeat-containing 100.0 9.9E-31 2.1E-35 210.2 23.7 265 9-302 218-514 (519)
29 KOG0273 Beta-transducin family 100.0 3E-30 6.6E-35 210.4 25.3 244 6-300 267-522 (524)
30 PLN00181 protein SPA1-RELATED; 100.0 4.7E-29 1E-33 232.8 36.1 278 9-300 477-792 (793)
31 KOG0276 Vesicle coat complex C 100.0 2.1E-30 4.5E-35 218.1 22.4 251 5-303 3-259 (794)
32 KOG0266 WD40 repeat-containing 100.0 1.2E-29 2.7E-34 221.6 27.0 248 7-301 195-454 (456)
33 KOG0265 U5 snRNP-specific prot 100.0 3.3E-29 7.2E-34 193.9 25.0 260 10-299 42-336 (338)
34 KOG0643 Translation initiation 100.0 4.1E-29 8.9E-34 190.5 24.7 261 11-300 6-316 (327)
35 KOG0278 Serine/threonine kinas 100.0 8.2E-31 1.8E-35 198.1 14.9 245 7-300 51-296 (334)
36 PTZ00421 coronin; Provisional 100.0 2.7E-28 5.9E-33 212.8 32.4 256 16-302 21-291 (493)
37 KOG0277 Peroxisomal targeting 100.0 8E-30 1.7E-34 193.1 19.5 241 16-300 61-308 (311)
38 KOG0286 G-protein beta subunit 100.0 1.8E-28 3.9E-33 189.2 26.4 225 56-301 48-303 (343)
39 KOG0310 Conserved WD40 repeat- 100.0 2.8E-29 6.1E-34 205.6 23.2 244 14-303 25-270 (487)
40 KOG0640 mRNA cleavage stimulat 100.0 3.2E-29 7E-34 195.0 20.5 277 11-299 108-424 (430)
41 KOG0268 Sof1-like rRNA process 100.0 4.2E-30 9.2E-35 203.5 14.6 242 8-301 59-302 (433)
42 KOG0319 WD40-repeat-containing 100.0 7.8E-29 1.7E-33 212.1 23.1 254 3-301 311-577 (775)
43 KOG0275 Conserved WD40 repeat- 100.0 1.8E-30 3.8E-35 203.3 11.3 243 17-299 215-507 (508)
44 KOG0264 Nucleosome remodeling 100.0 1.1E-28 2.5E-33 200.5 21.8 269 12-301 121-404 (422)
45 KOG0313 Microtubule binding pr 100.0 2.5E-28 5.3E-33 194.5 22.9 251 8-301 137-418 (423)
46 KOG1332 Vesicle coat complex C 100.0 8.2E-29 1.8E-33 186.6 18.6 252 11-300 7-285 (299)
47 KOG2445 Nuclear pore complex c 100.0 6.9E-28 1.5E-32 187.2 24.1 268 11-300 9-317 (361)
48 KOG0313 Microtubule binding pr 100.0 2.2E-28 4.8E-33 194.7 21.8 240 14-300 104-375 (423)
49 KOG0281 Beta-TrCP (transducin 100.0 2.2E-29 4.8E-34 198.7 15.0 248 6-301 228-477 (499)
50 KOG0265 U5 snRNP-specific prot 100.0 2.8E-28 6.1E-33 188.7 20.2 206 75-303 41-248 (338)
51 KOG0315 G-protein beta subunit 100.0 4.6E-28 9.9E-33 183.1 20.8 205 81-303 40-247 (311)
52 KOG0305 Anaphase promoting com 100.0 1.1E-27 2.4E-32 202.7 25.3 238 15-301 217-461 (484)
53 PTZ00420 coronin; Provisional 100.0 4.3E-27 9.3E-32 206.5 29.6 206 76-301 69-293 (568)
54 KOG0276 Vesicle coat complex C 100.0 6.3E-28 1.4E-32 203.3 22.1 241 11-297 51-295 (794)
55 KOG0284 Polyadenylation factor 100.0 5.3E-29 1.2E-33 199.9 14.7 200 78-301 135-337 (464)
56 KOG0281 Beta-TrCP (transducin 100.0 2.5E-29 5.4E-34 198.4 12.6 227 16-301 198-428 (499)
57 KOG0289 mRNA splicing factor [ 100.0 2.4E-27 5.2E-32 191.9 23.3 247 7-300 253-505 (506)
58 KOG0645 WD40 repeat protein [G 100.0 1.2E-26 2.6E-31 177.4 25.6 205 76-299 9-223 (312)
59 KOG0295 WD40 repeat-containing 100.0 6.7E-28 1.5E-32 191.0 19.3 225 7-238 142-405 (406)
60 KOG0277 Peroxisomal targeting 100.0 2.5E-27 5.4E-32 179.6 21.3 200 81-301 60-265 (311)
61 PTZ00421 coronin; Provisional 100.0 1.2E-26 2.5E-31 202.6 28.8 218 10-247 70-298 (493)
62 KOG1407 WD40 repeat protein [F 100.0 1E-26 2.2E-31 177.0 24.1 248 5-302 54-312 (313)
63 KOG0306 WD40-repeat-containing 100.0 1.1E-26 2.5E-31 199.4 26.7 261 10-301 368-664 (888)
64 KOG0294 WD40 repeat-containing 100.0 1.2E-26 2.7E-31 180.8 23.9 242 8-301 36-281 (362)
65 KOG0299 U3 snoRNP-associated p 100.0 4.3E-27 9.4E-32 191.6 21.6 272 10-301 137-410 (479)
66 KOG0283 WD40 repeat-containing 100.0 3.3E-27 7.1E-32 205.2 21.3 206 79-300 265-531 (712)
67 KOG0300 WD40 repeat-containing 100.0 1.6E-26 3.6E-31 180.6 22.9 270 5-301 138-476 (481)
68 KOG0292 Vesicle coat complex C 100.0 4.6E-27 1E-31 205.0 21.8 246 11-302 5-281 (1202)
69 KOG2096 WD40 repeat protein [G 100.0 3.7E-26 8.1E-31 178.6 23.6 263 8-299 79-400 (420)
70 KOG0316 Conserved WD40 repeat- 100.0 1.5E-26 3.2E-31 173.7 20.0 243 6-298 50-296 (307)
71 KOG0274 Cdc4 and related F-box 100.0 3.2E-26 7E-31 200.3 25.0 243 4-301 238-482 (537)
72 KOG0647 mRNA export protein (c 100.0 9E-26 2E-30 175.1 24.4 249 15-301 27-281 (347)
73 KOG0288 WD40 repeat protein Ti 100.0 8.2E-27 1.8E-31 187.7 18.7 243 5-298 209-458 (459)
74 KOG1446 Histone H3 (Lys4) meth 100.0 5.4E-25 1.2E-29 171.9 27.1 260 11-299 10-301 (311)
75 KOG0285 Pleiotropic regulator 100.0 3.4E-26 7.5E-31 181.2 20.3 220 56-300 144-388 (460)
76 PTZ00420 coronin; Provisional 99.9 4.3E-25 9.3E-30 194.0 28.8 214 9-242 68-296 (568)
77 KOG0973 Histone transcription 99.9 1.1E-25 2.5E-30 200.4 24.7 277 11-301 8-355 (942)
78 KOG0292 Vesicle coat complex C 99.9 2.1E-25 4.6E-30 194.8 25.8 226 6-239 42-321 (1202)
79 KOG0264 Nucleosome remodeling 99.9 2.6E-26 5.5E-31 186.9 18.3 213 10-239 172-404 (422)
80 KOG0639 Transducin-like enhanc 99.9 1.2E-26 2.5E-31 191.3 16.2 250 7-300 412-662 (705)
81 KOG0301 Phospholipase A2-activ 99.9 2.1E-25 4.6E-30 190.1 23.9 260 2-301 1-288 (745)
82 KOG0310 Conserved WD40 repeat- 99.9 2.7E-25 5.9E-30 182.4 23.5 237 11-297 64-305 (487)
83 KOG0269 WD40 repeat-containing 99.9 1E-26 2.3E-31 200.1 16.0 233 20-296 92-335 (839)
84 KOG0278 Serine/threonine kinas 99.9 4.9E-27 1.1E-31 177.7 12.1 242 10-301 9-254 (334)
85 PLN00181 protein SPA1-RELATED; 99.9 8.5E-25 1.8E-29 204.4 29.3 205 75-301 477-690 (793)
86 KOG0282 mRNA splicing factor [ 99.9 1.5E-26 3.2E-31 189.6 14.3 221 76-300 209-461 (503)
87 KOG0308 Conserved WD40 repeat- 99.9 8.4E-26 1.8E-30 191.2 18.7 244 20-303 29-287 (735)
88 cd00200 WD40 WD40 domain, foun 99.9 2E-24 4.4E-29 177.6 26.6 202 76-301 4-207 (289)
89 KOG0289 mRNA splicing factor [ 99.9 9.8E-25 2.1E-29 176.8 23.7 237 16-299 220-460 (506)
90 KOG0288 WD40 repeat protein Ti 99.9 3.2E-26 7E-31 184.3 14.1 248 9-301 169-417 (459)
91 KOG1036 Mitotic spindle checkp 99.9 3.5E-24 7.6E-29 166.7 24.1 242 15-301 13-262 (323)
92 KOG0641 WD40 repeat protein [G 99.9 2.9E-23 6.2E-28 155.4 26.2 263 6-301 24-303 (350)
93 KOG0641 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 154.0 26.8 255 6-301 80-349 (350)
94 KOG0274 Cdc4 and related F-box 99.9 5.9E-24 1.3E-28 186.2 24.2 233 14-302 207-442 (537)
95 KOG1446 Histone H3 (Lys4) meth 99.9 2.8E-23 6.1E-28 162.3 24.3 217 79-301 12-262 (311)
96 KOG1407 WD40 repeat protein [F 99.9 5E-24 1.1E-28 162.3 19.3 205 76-302 15-220 (313)
97 KOG0302 Ribosome Assembly prot 99.9 7.3E-24 1.6E-28 169.1 20.6 280 9-298 145-436 (440)
98 KOG4283 Transcription-coupled 99.9 5.3E-23 1.1E-27 159.5 24.5 220 11-242 39-279 (397)
99 KOG1274 WD40 repeat protein [G 99.9 3.9E-23 8.6E-28 181.3 26.1 242 12-301 10-262 (933)
100 KOG0772 Uncharacterized conser 99.9 3E-24 6.4E-29 177.6 16.3 209 10-237 263-485 (641)
101 KOG0294 WD40 repeat-containing 99.9 7.7E-23 1.7E-27 159.8 21.8 205 71-301 33-237 (362)
102 KOG2055 WD40 repeat protein [G 99.9 9.9E-23 2.1E-27 166.5 23.4 262 16-303 214-514 (514)
103 KOG1332 Vesicle coat complex C 99.9 1.1E-23 2.5E-28 159.0 16.1 213 5-238 46-285 (299)
104 KOG0306 WD40-repeat-containing 99.9 2.5E-23 5.4E-28 179.0 20.2 217 8-240 447-665 (888)
105 KOG0268 Sof1-like rRNA process 99.9 7.2E-24 1.6E-28 168.3 14.9 241 6-300 100-344 (433)
106 KOG0267 Microtubule severing p 99.9 9.4E-25 2E-29 187.0 10.3 236 10-293 23-260 (825)
107 KOG0299 U3 snoRNP-associated p 99.9 1.8E-22 3.9E-27 164.9 22.5 237 12-295 199-450 (479)
108 KOG0301 Phospholipase A2-activ 99.9 3.9E-23 8.4E-28 176.4 19.0 195 8-240 94-289 (745)
109 KOG0293 WD40 repeat-containing 99.9 1.4E-22 3E-27 163.6 19.4 203 77-301 265-470 (519)
110 KOG0308 Conserved WD40 repeat- 99.9 7E-23 1.5E-27 173.7 18.2 210 8-241 66-287 (735)
111 KOG0650 WD40 repeat nucleolar 99.9 2.9E-22 6.3E-27 168.6 21.0 266 9-298 394-732 (733)
112 KOG0646 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 159.7 24.4 214 80-301 80-307 (476)
113 KOG0640 mRNA cleavage stimulat 99.9 1.2E-22 2.7E-27 158.5 16.0 205 77-301 108-335 (430)
114 KOG1009 Chromatin assembly com 99.9 5.9E-22 1.3E-26 159.6 19.8 182 5-203 4-199 (434)
115 KOG0643 Translation initiation 99.9 3.7E-21 7.9E-26 147.3 22.6 201 77-301 6-220 (327)
116 KOG0275 Conserved WD40 repeat- 99.9 3.4E-23 7.4E-28 162.6 11.8 221 79-301 211-467 (508)
117 KOG1539 WD repeat protein [Gen 99.9 1.7E-21 3.7E-26 169.6 22.9 269 6-300 235-605 (910)
118 KOG1063 RNA polymerase II elon 99.9 1.7E-21 3.6E-26 166.5 22.3 281 3-301 179-648 (764)
119 KOG0973 Histone transcription 99.9 1.1E-21 2.3E-26 175.3 21.9 223 9-243 63-359 (942)
120 KOG4328 WD40 protein [Function 99.9 1.3E-21 2.9E-26 159.8 20.5 257 10-300 181-449 (498)
121 KOG2096 WD40 repeat protein [G 99.9 1E-21 2.2E-26 153.9 18.8 211 76-301 81-308 (420)
122 KOG2106 Uncharacterized conser 99.9 2.3E-20 4.9E-25 154.4 27.6 264 6-302 191-478 (626)
123 KOG0269 WD40 repeat-containing 99.9 3.9E-22 8.4E-27 172.3 17.9 248 17-302 41-297 (839)
124 KOG0302 Ribosome Assembly prot 99.9 3E-22 6.5E-27 159.9 16.0 201 9-231 205-431 (440)
125 KOG0305 Anaphase promoting com 99.9 3.2E-21 6.9E-26 163.7 22.4 229 20-301 182-419 (484)
126 KOG0296 Angio-associated migra 99.9 5.7E-21 1.2E-25 152.0 21.4 169 76-248 59-229 (399)
127 KOG1273 WD40 repeat protein [G 99.9 5E-21 1.1E-25 149.8 20.2 238 18-301 26-322 (405)
128 KOG0321 WD40 repeat-containing 99.9 5.5E-21 1.2E-25 162.0 21.5 261 25-303 61-393 (720)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-19 4.2E-24 150.0 30.0 242 9-302 25-280 (300)
130 KOG0267 Microtubule severing p 99.9 7.5E-23 1.6E-27 175.4 8.4 200 78-301 25-226 (825)
131 KOG0270 WD40 repeat-containing 99.9 4.8E-21 1E-25 156.0 17.4 204 11-242 239-452 (463)
132 KOG0647 mRNA export protein (c 99.9 2.3E-20 4.9E-25 145.3 20.1 200 80-301 26-228 (347)
133 KOG4283 Transcription-coupled 99.9 2.3E-20 5E-25 144.9 20.0 229 64-300 25-275 (397)
134 KOG1034 Transcriptional repres 99.9 2.6E-21 5.6E-26 152.1 14.5 209 7-239 127-383 (385)
135 KOG2055 WD40 repeat protein [G 99.9 2.8E-20 6.2E-25 152.2 19.7 201 81-301 213-417 (514)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.8E-19 1.9E-23 146.1 29.3 232 29-302 2-238 (300)
137 KOG2445 Nuclear pore complex c 99.9 9.6E-20 2.1E-24 142.2 21.2 206 78-301 10-256 (361)
138 KOG2106 Uncharacterized conser 99.9 9.1E-19 2E-23 145.1 28.1 279 11-300 283-625 (626)
139 KOG1408 WD40 repeat protein [F 99.9 2.9E-20 6.3E-25 159.7 19.8 242 15-301 459-713 (1080)
140 KOG1408 WD40 repeat protein [F 99.9 2.4E-20 5.1E-25 160.3 18.8 201 81-300 459-670 (1080)
141 KOG2048 WD40 repeat protein [G 99.9 5.1E-19 1.1E-23 151.1 26.2 237 16-300 26-274 (691)
142 KOG1036 Mitotic spindle checkp 99.9 3E-19 6.5E-24 139.4 22.6 225 14-291 53-294 (323)
143 KOG0307 Vesicle coat complex C 99.9 4.4E-21 9.6E-26 172.3 14.1 246 17-301 66-327 (1049)
144 KOG1240 Protein kinase contain 99.9 5E-19 1.1E-23 160.1 25.3 280 3-301 1037-1334(1431)
145 KOG1188 WD40 repeat protein [G 99.9 7.1E-20 1.5E-24 144.8 17.5 246 29-299 41-344 (376)
146 KOG1539 WD repeat protein [Gen 99.9 6.6E-19 1.4E-23 153.6 24.9 193 82-298 449-645 (910)
147 KOG0646 WD40 repeat protein [G 99.9 2.7E-19 5.9E-24 146.7 21.2 209 15-248 81-316 (476)
148 KOG1063 RNA polymerase II elon 99.9 3.3E-19 7.2E-24 152.6 22.4 210 79-301 523-763 (764)
149 KOG1007 WD repeat protein TSSC 99.8 5.1E-19 1.1E-23 137.1 21.1 278 10-302 58-362 (370)
150 KOG0649 WD40 repeat protein [G 99.8 8.5E-19 1.9E-23 132.8 21.2 211 16-247 11-243 (325)
151 KOG1524 WD40 repeat-containing 99.8 3.2E-19 6.9E-24 148.8 20.2 245 13-297 12-282 (737)
152 KOG1274 WD40 repeat protein [G 99.8 1.1E-18 2.3E-23 153.8 24.4 197 14-240 55-263 (933)
153 KOG0270 WD40 repeat-containing 99.8 2.2E-19 4.7E-24 146.4 18.6 248 27-302 191-450 (463)
154 KOG0639 Transducin-like enhanc 99.8 9.3E-20 2E-24 150.9 16.3 233 20-300 470-703 (705)
155 KOG0307 Vesicle coat complex C 99.8 1.4E-20 3.1E-25 169.1 11.8 216 4-242 105-330 (1049)
156 KOG0300 WD40 repeat-containing 99.8 2.8E-19 6.1E-24 140.3 16.1 203 76-301 185-428 (481)
157 KOG0303 Actin-binding protein 99.8 6.3E-19 1.4E-23 141.9 17.9 205 77-302 77-295 (472)
158 KOG0290 Conserved WD40 repeat- 99.8 1.1E-18 2.5E-23 135.3 17.7 203 13-236 148-362 (364)
159 KOG4378 Nuclear protein COP1 [ 99.8 5.7E-19 1.2E-23 146.0 17.1 237 18-300 37-279 (673)
160 KOG2048 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 142.6 25.7 203 82-301 26-233 (691)
161 KOG0303 Actin-binding protein 99.8 2.1E-18 4.6E-23 138.9 19.4 212 10-242 76-297 (472)
162 KOG1587 Cytoplasmic dynein int 99.8 7.2E-18 1.6E-22 147.2 23.5 251 15-301 242-516 (555)
163 KOG4378 Nuclear protein COP1 [ 99.8 1.9E-18 4.2E-23 142.9 18.7 199 18-242 82-283 (673)
164 KOG0642 Cell-cycle nuclear pro 99.8 1E-18 2.2E-23 146.5 15.3 255 7-300 286-560 (577)
165 KOG2919 Guanine nucleotide-bin 99.8 2E-17 4.2E-22 130.3 21.3 252 20-303 54-329 (406)
166 KOG1538 Uncharacterized conser 99.8 1.2E-17 2.6E-22 142.9 21.4 223 6-238 44-292 (1081)
167 KOG1034 Transcriptional repres 99.8 6.6E-18 1.4E-22 133.1 16.7 264 11-302 34-338 (385)
168 KOG1538 Uncharacterized conser 99.8 1.1E-17 2.3E-22 143.2 19.0 249 17-300 14-292 (1081)
169 KOG1445 Tumor-specific antigen 99.8 3.4E-18 7.4E-23 145.4 14.4 184 35-240 600-799 (1012)
170 KOG4328 WD40 protein [Function 99.8 9.1E-18 2E-22 137.6 16.0 209 76-301 181-399 (498)
171 KOG0322 G-protein beta subunit 99.8 1.1E-17 2.4E-22 128.2 15.3 246 10-300 9-322 (323)
172 KOG0650 WD40 repeat nucleolar 99.8 5.3E-17 1.2E-21 137.2 20.2 200 77-301 396-637 (733)
173 KOG0321 WD40 repeat-containing 99.7 1E-16 2.2E-21 136.4 17.4 227 11-240 140-392 (720)
174 KOG4227 WD40 repeat protein [G 99.7 7E-16 1.5E-20 124.6 20.9 270 9-300 50-386 (609)
175 KOG1517 Guanine nucleotide bin 99.7 3.9E-16 8.5E-21 139.8 21.2 254 18-300 1112-1380(1387)
176 KOG1009 Chromatin assembly com 99.7 9.1E-17 2E-21 129.9 15.7 207 82-290 14-249 (434)
177 PRK11028 6-phosphogluconolacto 99.7 1E-14 2.2E-19 123.5 27.1 255 5-301 25-304 (330)
178 KOG1273 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 119.3 19.8 194 84-301 26-226 (405)
179 COG2319 FOG: WD40 repeat [Gene 99.7 4.4E-14 9.5E-19 122.4 29.9 244 10-301 60-314 (466)
180 KOG2110 Uncharacterized conser 99.7 6.6E-14 1.4E-18 112.4 27.9 235 15-302 5-249 (391)
181 KOG2919 Guanine nucleotide-bin 99.7 1.3E-15 2.7E-20 120.2 17.4 223 27-292 122-361 (406)
182 KOG1310 WD40 repeat protein [G 99.7 3E-16 6.4E-21 131.7 14.7 226 74-302 43-304 (758)
183 KOG1007 WD repeat protein TSSC 99.7 1.3E-15 2.9E-20 118.4 16.4 204 13-238 121-360 (370)
184 PRK01742 tolB translocation pr 99.7 3.9E-15 8.5E-20 130.0 21.4 193 78-300 200-400 (429)
185 KOG0644 Uncharacterized conser 99.7 4.1E-17 8.8E-22 142.7 8.4 241 8-300 183-467 (1113)
186 PRK11028 6-phosphogluconolacto 99.7 9.8E-14 2.1E-18 117.5 28.6 237 30-301 4-258 (330)
187 COG2319 FOG: WD40 repeat [Gene 99.7 1.8E-13 3.9E-18 118.6 31.1 241 17-302 111-360 (466)
188 KOG0771 Prolactin regulatory e 99.7 1.2E-15 2.7E-20 124.1 15.3 194 19-238 148-353 (398)
189 KOG0290 Conserved WD40 repeat- 99.7 3.3E-15 7.1E-20 116.3 15.9 202 79-302 94-319 (364)
190 KOG1524 WD40 repeat-containing 99.7 2E-15 4.3E-20 126.5 15.5 165 7-196 96-283 (737)
191 KOG0771 Prolactin regulatory e 99.7 2.7E-15 5.9E-20 122.1 15.6 192 85-300 148-353 (398)
192 KOG1963 WD40 repeat protein [G 99.7 6.8E-14 1.5E-18 123.5 25.2 167 79-248 203-384 (792)
193 KOG2110 Uncharacterized conser 99.7 6.4E-13 1.4E-17 106.8 28.4 156 82-242 88-251 (391)
194 KOG0642 Cell-cycle nuclear pro 99.7 1.7E-15 3.8E-20 127.3 14.5 184 6-205 335-567 (577)
195 KOG1523 Actin-related protein 99.7 2E-14 4.4E-19 113.3 18.4 214 81-300 10-235 (361)
196 KOG0649 WD40 repeat protein [G 99.7 2.4E-13 5.2E-18 103.6 22.8 208 10-239 57-274 (325)
197 KOG1310 WD40 repeat protein [G 99.6 3.7E-15 8E-20 125.2 13.6 222 1-246 36-310 (758)
198 KOG1188 WD40 repeat protein [G 99.6 4.8E-15 1E-19 117.7 12.8 143 140-301 41-196 (376)
199 PF08662 eIF2A: Eukaryotic tra 99.6 7.2E-14 1.6E-18 108.3 19.2 108 169-300 59-178 (194)
200 PF08662 eIF2A: Eukaryotic tra 99.6 1.1E-13 2.3E-18 107.3 19.3 117 125-246 59-185 (194)
201 KOG4227 WD40 repeat protein [G 99.6 3.5E-14 7.6E-19 114.9 16.3 164 76-241 51-227 (609)
202 KOG1523 Actin-related protein 99.6 1.2E-13 2.7E-18 108.9 18.6 208 11-241 6-238 (361)
203 KOG0644 Uncharacterized conser 99.6 1.5E-15 3.3E-20 133.1 5.8 116 76-199 185-300 (1113)
204 KOG1517 Guanine nucleotide bin 99.6 7.2E-13 1.6E-17 119.4 21.9 245 18-301 1067-1333(1387)
205 KOG2321 WD40 repeat protein [G 99.6 3.9E-13 8.4E-18 113.8 18.9 265 3-298 40-340 (703)
206 KOG2394 WD40 protein DMR-N9 [G 99.6 1.2E-13 2.6E-18 115.9 15.4 159 16-178 220-383 (636)
207 KOG1334 WD40 repeat protein [G 99.6 9E-14 1.9E-18 115.3 13.9 266 4-300 131-423 (559)
208 PRK03629 tolB translocation pr 99.6 1.1E-11 2.3E-16 108.3 27.6 194 80-300 197-405 (429)
209 KOG3881 Uncharacterized conser 99.5 2.9E-12 6.2E-17 103.8 20.8 244 16-302 56-321 (412)
210 KOG2139 WD40 repeat protein [G 99.5 1.4E-11 2.9E-16 99.2 24.0 253 16-300 141-430 (445)
211 KOG0322 G-protein beta subunit 99.5 4.6E-14 1E-18 108.5 9.4 168 16-198 151-322 (323)
212 KOG1963 WD40 repeat protein [G 99.5 6.4E-12 1.4E-16 111.3 23.9 202 13-239 203-438 (792)
213 KOG1354 Serine/threonine prote 99.5 4.7E-13 1E-17 106.7 15.1 224 16-242 85-362 (433)
214 KOG1587 Cytoplasmic dynein int 99.5 1.9E-12 4.1E-17 113.6 19.9 201 81-301 242-472 (555)
215 KOG2111 Uncharacterized conser 99.5 5.9E-11 1.3E-15 93.9 26.0 157 81-242 94-259 (346)
216 PRK01742 tolB translocation pr 99.5 1.4E-12 3E-17 114.1 18.9 194 11-238 199-400 (429)
217 KOG1445 Tumor-specific antigen 99.5 7.8E-13 1.7E-17 113.3 16.4 212 7-241 71-295 (1012)
218 PRK05137 tolB translocation pr 99.5 3.6E-11 7.7E-16 105.5 27.1 196 78-300 198-411 (435)
219 PRK04922 tolB translocation pr 99.5 1.3E-11 2.9E-16 108.1 24.3 195 79-300 201-410 (433)
220 KOG3881 Uncharacterized conser 99.5 7E-13 1.5E-17 107.3 14.7 186 17-221 150-342 (412)
221 KOG1272 WD40-repeat-containing 99.5 1E-13 2.2E-18 114.4 9.9 207 19-237 133-360 (545)
222 KOG2139 WD40 repeat protein [G 99.5 9.8E-12 2.1E-16 99.9 19.8 193 18-238 101-308 (445)
223 PRK02889 tolB translocation pr 99.5 3.1E-11 6.8E-16 105.5 24.0 188 79-293 193-392 (427)
224 KOG4497 Uncharacterized conser 99.5 2.6E-12 5.6E-17 102.1 15.1 209 86-299 13-238 (447)
225 KOG1354 Serine/threonine prote 99.5 8.9E-12 1.9E-16 99.6 18.1 271 14-302 24-360 (433)
226 KOG1409 Uncharacterized conser 99.5 3.7E-11 8E-16 96.1 20.4 228 6-241 15-272 (404)
227 KOG2394 WD40 protein DMR-N9 [G 99.4 1.1E-11 2.3E-16 104.4 16.7 138 81-220 219-384 (636)
228 KOG0974 WD-repeat protein WDR6 99.4 1.1E-11 2.5E-16 111.6 17.5 194 84-300 90-287 (967)
229 PRK04922 tolB translocation pr 99.4 1E-10 2.2E-15 102.6 22.5 199 11-241 199-413 (433)
230 TIGR02800 propeller_TolB tol-p 99.4 6.6E-10 1.4E-14 97.3 25.7 188 79-293 187-386 (417)
231 KOG4497 Uncharacterized conser 99.4 2.3E-10 5.1E-15 91.1 20.3 242 14-296 90-427 (447)
232 KOG2321 WD40 repeat protein [G 99.4 5.7E-11 1.2E-15 100.9 17.4 164 79-244 49-263 (703)
233 KOG0280 Uncharacterized conser 99.4 1.3E-10 2.8E-15 91.1 17.6 157 84-241 124-286 (339)
234 KOG2111 Uncharacterized conser 99.4 4.1E-10 8.8E-15 89.3 19.8 171 103-300 75-255 (346)
235 PF10282 Lactonase: Lactonase, 99.3 2.8E-08 6E-13 84.6 32.2 245 18-301 39-322 (345)
236 PRK03629 tolB translocation pr 99.3 9E-10 2E-14 96.3 23.7 197 13-241 196-408 (429)
237 PRK05137 tolB translocation pr 99.3 8.4E-10 1.8E-14 96.9 23.0 200 11-242 197-415 (435)
238 KOG4190 Uncharacterized conser 99.3 1.9E-11 4.1E-16 103.6 11.8 176 10-207 730-914 (1034)
239 PRK02889 tolB translocation pr 99.3 5E-10 1.1E-14 98.0 21.3 197 12-239 192-403 (427)
240 KOG1064 RAVE (regulator of V-A 99.3 2.4E-11 5.2E-16 115.0 12.3 197 14-248 2207-2407(2439)
241 PRK00178 tolB translocation pr 99.3 3.1E-09 6.7E-14 93.4 24.4 162 77-243 194-367 (430)
242 KOG0974 WD-repeat protein WDR6 99.3 7.1E-11 1.5E-15 106.6 13.8 145 27-200 144-289 (967)
243 KOG1334 WD40 repeat protein [G 99.3 6.7E-11 1.4E-15 98.6 12.4 249 11-300 181-465 (559)
244 KOG4547 WD40 repeat-containing 99.3 1.1E-09 2.5E-14 93.4 20.0 204 26-240 3-221 (541)
245 KOG1240 Protein kinase contain 99.3 7.8E-10 1.7E-14 101.7 19.4 168 78-247 1045-1233(1431)
246 PRK04792 tolB translocation pr 99.2 7.1E-09 1.5E-13 91.1 23.4 159 80-243 216-386 (448)
247 KOG1272 WD40-repeat-containing 99.2 3.3E-11 7.1E-16 99.9 7.9 193 83-303 131-325 (545)
248 KOG4547 WD40 repeat-containing 99.2 4.9E-09 1.1E-13 89.6 19.6 189 91-300 3-219 (541)
249 PF02239 Cytochrom_D1: Cytochr 99.2 8.4E-09 1.8E-13 87.9 20.8 108 142-249 9-118 (369)
250 KOG2315 Predicted translation 99.2 1.5E-08 3.3E-13 86.2 21.6 127 149-300 251-389 (566)
251 PF02239 Cytochrom_D1: Cytochr 99.2 2.4E-07 5.1E-12 79.1 29.2 190 31-248 9-211 (369)
252 TIGR02800 propeller_TolB tol-p 99.1 2.4E-08 5.2E-13 87.5 22.3 171 104-301 171-354 (417)
253 KOG0882 Cyclophilin-related pe 99.1 1.1E-09 2.3E-14 90.8 12.5 215 12-249 6-241 (558)
254 PF10282 Lactonase: Lactonase, 99.1 7.8E-07 1.7E-11 75.8 29.9 205 83-300 38-274 (345)
255 COG5170 CDC55 Serine/threonine 99.1 4.5E-09 9.8E-14 83.4 14.5 263 15-299 26-365 (460)
256 PLN02919 haloacid dehalogenase 99.1 5.3E-07 1.2E-11 86.8 30.8 262 20-301 572-888 (1057)
257 PRK01029 tolB translocation pr 99.1 4.7E-08 1E-12 85.4 21.9 195 81-300 184-402 (428)
258 KOG2315 Predicted translation 99.1 8.8E-08 1.9E-12 81.7 22.2 113 124-240 269-391 (566)
259 TIGR02658 TTQ_MADH_Hv methylam 99.1 7.7E-07 1.7E-11 74.6 27.6 249 6-302 38-331 (352)
260 PRK01029 tolB translocation pr 99.1 7.8E-08 1.7E-12 84.0 22.6 157 83-243 232-407 (428)
261 KOG1064 RAVE (regulator of V-A 99.0 2.5E-09 5.4E-14 101.9 11.8 186 80-302 2207-2399(2439)
262 PRK00178 tolB translocation pr 99.0 1.6E-07 3.5E-12 82.6 22.6 199 11-240 194-407 (430)
263 COG2706 3-carboxymuconate cycl 99.0 4.2E-06 9.2E-11 68.2 27.4 249 14-301 38-321 (346)
264 COG4946 Uncharacterized protei 99.0 2.9E-06 6.2E-11 71.5 25.9 142 79-225 357-503 (668)
265 KOG3914 WD repeat protein WDR4 98.9 1.6E-08 3.4E-13 82.8 12.0 164 84-248 65-232 (390)
266 PRK04792 tolB translocation pr 98.9 3.1E-07 6.7E-12 80.9 21.1 168 104-298 199-377 (448)
267 KOG2041 WD40 repeat protein [G 98.9 9.2E-07 2E-11 78.0 22.7 222 16-249 15-306 (1189)
268 COG2706 3-carboxymuconate cycl 98.9 5.1E-06 1.1E-10 67.7 25.1 209 79-300 37-273 (346)
269 PF04762 IKI3: IKI3 family; I 98.9 5.7E-06 1.2E-10 78.5 29.4 200 80-303 74-335 (928)
270 PF04762 IKI3: IKI3 family; I 98.9 3.3E-06 7.2E-11 80.1 27.7 284 5-300 113-455 (928)
271 KOG0309 Conserved WD40 repeat- 98.9 1.2E-08 2.6E-13 89.7 10.6 212 77-301 110-339 (1081)
272 PF00400 WD40: WD domain, G-be 98.9 7.9E-09 1.7E-13 57.7 6.3 38 160-197 2-39 (39)
273 COG5170 CDC55 Serine/threonine 98.9 5.4E-08 1.2E-12 77.4 13.1 215 81-301 26-309 (460)
274 KOG1409 Uncharacterized conser 98.9 8.1E-08 1.8E-12 77.3 13.9 205 76-301 19-227 (404)
275 KOG4532 WD40-like repeat conta 98.9 1.8E-06 3.9E-11 67.5 20.3 194 28-247 84-290 (344)
276 KOG4532 WD40-like repeat conta 98.9 7.3E-07 1.6E-11 69.7 18.0 154 84-239 161-331 (344)
277 COG5354 Uncharacterized protei 98.9 6.2E-06 1.4E-10 70.0 24.5 192 83-301 175-395 (561)
278 PLN02919 haloacid dehalogenase 98.8 4.1E-06 9E-11 80.8 26.6 160 84-244 685-893 (1057)
279 KOG4714 Nucleoporin [Nuclear s 98.8 5.3E-08 1.1E-12 75.5 10.8 73 127-200 181-255 (319)
280 COG4946 Uncharacterized protei 98.8 3.2E-06 6.9E-11 71.2 20.9 147 92-246 331-484 (668)
281 KOG2314 Translation initiation 98.8 3.8E-06 8.3E-11 72.0 21.5 111 169-300 445-572 (698)
282 KOG0280 Uncharacterized conser 98.8 1.1E-07 2.5E-12 74.9 11.2 170 5-198 155-332 (339)
283 KOG2041 WD40 repeat protein [G 98.8 7.5E-08 1.6E-12 84.6 10.7 156 82-240 15-187 (1189)
284 KOG4190 Uncharacterized conser 98.8 2.2E-08 4.8E-13 85.4 7.2 168 76-247 730-914 (1034)
285 KOG4714 Nucleoporin [Nuclear s 98.8 4.1E-07 8.8E-12 70.7 13.3 203 90-299 98-316 (319)
286 KOG0309 Conserved WD40 repeat- 98.8 6E-08 1.3E-12 85.4 9.8 200 82-301 25-232 (1081)
287 PRK04043 tolB translocation pr 98.8 7.5E-06 1.6E-10 71.3 22.8 153 83-242 189-360 (419)
288 PF00400 WD40: WD domain, G-be 98.7 5.7E-08 1.2E-12 54.2 5.5 34 76-109 6-39 (39)
289 PF15492 Nbas_N: Neuroblastoma 98.7 1.6E-05 3.6E-10 62.9 20.8 105 85-189 47-167 (282)
290 COG5354 Uncharacterized protei 98.7 1.4E-05 3.1E-10 67.9 21.3 114 125-242 274-398 (561)
291 KOG0882 Cyclophilin-related pe 98.7 1.5E-06 3.2E-11 72.7 14.6 218 3-247 41-313 (558)
292 PF08450 SGL: SMP-30/Gluconola 98.7 0.00012 2.7E-09 59.2 26.0 191 86-300 4-212 (246)
293 KOG3914 WD repeat protein WDR4 98.6 1.1E-06 2.5E-11 72.2 13.7 161 21-208 68-232 (390)
294 PF13360 PQQ_2: PQQ-like domai 98.6 5.2E-05 1.1E-09 61.0 23.1 180 92-302 35-231 (238)
295 TIGR03300 assembly_YfgL outer 98.6 3.7E-05 7.9E-10 66.5 22.7 214 28-300 65-296 (377)
296 KOG1912 WD40 repeat protein [G 98.6 2.6E-05 5.6E-10 69.7 21.3 254 6-299 8-302 (1062)
297 KOG2066 Vacuolar assembly/sort 98.6 4.2E-06 9.2E-11 74.7 16.0 183 15-239 39-233 (846)
298 PRK04043 tolB translocation pr 98.5 7.5E-05 1.6E-09 65.2 22.5 114 127-243 189-313 (419)
299 KOG1275 PAB-dependent poly(A) 98.5 5.8E-06 1.3E-10 74.9 15.5 181 92-299 146-340 (1118)
300 PF07433 DUF1513: Protein of u 98.5 0.00047 1E-08 56.4 26.4 206 19-248 8-256 (305)
301 KOG2695 WD40 repeat protein [G 98.4 6.3E-07 1.4E-11 72.4 6.9 145 97-249 228-386 (425)
302 TIGR02658 TTQ_MADH_Hv methylam 98.4 2.5E-05 5.3E-10 65.8 16.5 99 149-249 27-146 (352)
303 TIGR03300 assembly_YfgL outer 98.4 0.00021 4.6E-09 61.8 22.7 132 141-298 243-376 (377)
304 KOG2695 WD40 repeat protein [G 98.4 1.4E-06 3.1E-11 70.4 8.4 129 80-210 251-387 (425)
305 PF08450 SGL: SMP-30/Gluconola 98.4 0.00064 1.4E-08 55.0 30.2 217 20-289 4-243 (246)
306 KOG1832 HIV-1 Vpr-binding prot 98.4 1.9E-07 4E-12 84.1 3.0 198 9-247 1095-1299(1516)
307 PF15492 Nbas_N: Neuroblastoma 98.4 9.3E-05 2E-09 58.8 17.2 39 169-207 229-267 (282)
308 PF13360 PQQ_2: PQQ-like domai 98.4 0.00049 1.1E-08 55.3 22.4 186 28-245 36-236 (238)
309 KOG1912 WD40 repeat protein [G 98.4 1.7E-05 3.7E-10 70.8 14.2 152 83-238 17-185 (1062)
310 KOG2066 Vacuolar assembly/sort 98.3 8.6E-05 1.9E-09 66.7 17.2 150 82-249 40-197 (846)
311 KOG1645 RING-finger-containing 98.3 6.5E-05 1.4E-09 62.3 14.8 80 10-113 188-268 (463)
312 KOG1920 IkappaB kinase complex 98.2 0.0004 8.8E-09 65.4 20.7 199 82-303 69-324 (1265)
313 PF11768 DUF3312: Protein of u 98.2 4.8E-05 1E-09 66.2 12.7 72 168-240 258-330 (545)
314 KOG2114 Vacuolar assembly/sort 98.2 0.00097 2.1E-08 60.7 21.0 209 5-228 54-271 (933)
315 PF11768 DUF3312: Protein of u 98.1 0.00019 4.2E-09 62.6 15.7 77 79-161 257-333 (545)
316 PRK02888 nitrous-oxide reducta 98.0 0.00042 9E-09 62.0 16.1 92 148-240 295-405 (635)
317 PF07433 DUF1513: Protein of u 98.0 0.0053 1.2E-07 50.3 23.0 200 85-301 8-247 (305)
318 PF04053 Coatomer_WDAD: Coatom 98.0 0.0017 3.7E-08 56.9 19.3 142 83-241 34-175 (443)
319 KOG2114 Vacuolar assembly/sort 98.0 0.0081 1.7E-07 55.0 23.3 197 17-242 27-246 (933)
320 KOG2314 Translation initiation 97.9 0.00017 3.6E-09 62.3 11.3 111 129-244 214-339 (698)
321 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0027 5.8E-08 43.6 14.9 90 139-234 15-109 (111)
322 PRK11138 outer membrane biogen 97.9 0.013 2.9E-07 51.0 24.1 134 141-300 258-393 (394)
323 KOG4640 Anaphase-promoting com 97.9 0.00012 2.7E-09 64.1 9.8 90 128-220 23-115 (665)
324 PF04053 Coatomer_WDAD: Coatom 97.9 0.0007 1.5E-08 59.2 14.4 136 128-299 35-171 (443)
325 KOG1920 IkappaB kinase complex 97.9 0.0096 2.1E-07 56.6 22.2 112 130-244 200-327 (1265)
326 KOG1008 Uncharacterized conser 97.8 9E-06 2E-10 71.1 2.6 203 83-301 58-275 (783)
327 smart00320 WD40 WD40 repeats. 97.8 8.9E-05 1.9E-09 40.0 5.8 38 160-197 3-40 (40)
328 KOG3617 WD40 and TPR repeat-co 97.8 0.00021 4.6E-09 64.8 10.5 108 86-199 20-131 (1416)
329 KOG1275 PAB-dependent poly(A) 97.8 0.00049 1.1E-08 63.0 12.8 141 28-197 187-340 (1118)
330 PF08596 Lgl_C: Lethal giant l 97.8 0.02 4.3E-07 49.6 24.9 231 17-249 3-300 (395)
331 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0041 8.9E-08 42.7 13.9 65 172-238 2-70 (111)
332 PRK02888 nitrous-oxide reducta 97.7 0.0032 6.9E-08 56.5 16.3 104 190-302 295-405 (635)
333 PRK11138 outer membrane biogen 97.7 0.017 3.7E-07 50.3 20.4 147 93-246 120-281 (394)
334 PF06977 SdiA-regulated: SdiA- 97.7 0.02 4.4E-07 46.0 23.1 200 11-236 17-247 (248)
335 COG0823 TolB Periplasmic compo 97.6 0.0083 1.8E-07 52.4 17.6 155 83-243 194-362 (425)
336 KOG1645 RING-finger-containing 97.6 0.00024 5.2E-09 59.0 7.5 91 151-241 175-268 (463)
337 KOG3621 WD40 repeat-containing 97.6 0.00084 1.8E-08 59.8 10.6 113 175-301 39-154 (726)
338 KOG3617 WD40 and TPR repeat-co 97.6 0.0013 2.7E-08 60.1 11.8 150 18-199 62-220 (1416)
339 smart00320 WD40 WD40 repeats. 97.5 0.00024 5.2E-09 38.2 4.4 33 77-109 8-40 (40)
340 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00031 6.7E-09 64.2 6.1 120 122-246 1098-1221(1516)
341 COG0823 TolB Periplasmic compo 97.3 0.0063 1.4E-07 53.1 13.0 114 128-243 195-318 (425)
342 KOG3621 WD40 repeat-containing 97.3 0.0043 9.2E-08 55.5 11.7 116 82-200 34-155 (726)
343 KOG4640 Anaphase-promoting com 97.3 0.0017 3.6E-08 57.3 8.6 76 170-246 21-99 (665)
344 PF08553 VID27: VID27 cytoplas 97.1 0.028 6E-07 52.5 15.3 137 142-299 497-645 (794)
345 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.0015 3.2E-08 56.0 5.5 118 178-300 1-130 (353)
346 PF08596 Lgl_C: Lethal giant l 97.0 0.22 4.8E-06 43.2 19.6 210 11-237 82-333 (395)
347 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0041 8.9E-08 35.7 5.2 35 169-204 11-45 (47)
348 PF03178 CPSF_A: CPSF A subuni 96.9 0.2 4.4E-06 42.3 17.8 130 149-301 62-202 (321)
349 COG3391 Uncharacterized conser 96.8 0.29 6.3E-06 42.4 22.6 155 85-245 77-245 (381)
350 PF00780 CNH: CNH domain; Int 96.7 0.24 5.2E-06 40.7 16.6 97 140-240 8-123 (275)
351 PF06433 Me-amine-dh_H: Methyl 96.6 0.17 3.7E-06 42.4 14.5 99 149-249 17-136 (342)
352 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0084 1.8E-07 34.4 5.0 29 273-301 13-41 (47)
353 PF05694 SBP56: 56kDa selenium 96.5 0.48 1E-05 41.0 22.6 202 93-302 87-343 (461)
354 PF04841 Vps16_N: Vps16, N-ter 96.5 0.54 1.2E-05 41.2 27.0 159 82-249 81-256 (410)
355 KOG1008 Uncharacterized conser 96.5 0.001 2.2E-08 58.8 0.8 164 13-199 100-275 (783)
356 PF04841 Vps16_N: Vps16, N-ter 96.4 0.56 1.2E-05 41.1 20.6 51 104-160 62-112 (410)
357 PRK13616 lipoprotein LpqB; Pro 96.4 0.36 7.7E-06 44.3 16.5 103 127-235 351-472 (591)
358 KOG2444 WD40 repeat protein [G 96.4 0.022 4.7E-07 44.3 7.4 105 93-200 70-178 (238)
359 PF07569 Hira: TUP1-like enhan 96.4 0.034 7.4E-07 44.0 8.9 63 177-239 18-95 (219)
360 KOG4649 PQQ (pyrrolo-quinoline 96.3 0.22 4.8E-06 39.7 12.7 102 182-303 24-125 (354)
361 PF06977 SdiA-regulated: SdiA- 96.3 0.47 1E-05 38.3 23.6 202 80-298 20-247 (248)
362 cd00216 PQQ_DH Dehydrogenases 96.2 0.87 1.9E-05 41.0 21.1 154 94-248 111-328 (488)
363 KOG2395 Protein involved in va 96.1 0.8 1.7E-05 40.4 15.9 131 141-292 348-492 (644)
364 PF08553 VID27: VID27 cytoplas 96.0 0.099 2.1E-06 49.0 11.2 101 94-198 543-646 (794)
365 KOG2444 WD40 repeat protein [G 96.0 0.02 4.4E-07 44.5 5.7 66 140-205 71-138 (238)
366 PF00780 CNH: CNH domain; Int 96.0 0.74 1.6E-05 37.8 22.0 145 91-244 5-170 (275)
367 cd00216 PQQ_DH Dehydrogenases 95.9 0.55 1.2E-05 42.3 15.5 107 141-249 63-193 (488)
368 KOG2079 Vacuolar assembly/sort 95.9 0.045 9.8E-07 51.7 8.4 103 91-198 97-202 (1206)
369 COG3386 Gluconolactonase [Carb 95.8 0.97 2.1E-05 37.8 22.6 100 149-250 143-253 (307)
370 PRK13616 lipoprotein LpqB; Pro 95.7 0.69 1.5E-05 42.5 15.3 145 82-237 350-523 (591)
371 KOG2079 Vacuolar assembly/sort 95.6 0.094 2E-06 49.7 9.2 70 180-249 98-170 (1206)
372 PF03178 CPSF_A: CPSF A subuni 95.6 1.2 2.6E-05 37.6 18.0 149 80-236 87-262 (321)
373 KOG4649 PQQ (pyrrolo-quinoline 95.5 0.98 2.1E-05 36.2 19.5 134 94-234 24-160 (354)
374 PF10168 Nup88: Nuclear pore c 95.5 0.93 2E-05 42.6 15.3 71 171-242 86-182 (717)
375 PF08728 CRT10: CRT10; InterP 95.4 0.25 5.4E-06 45.7 11.1 135 18-156 103-245 (717)
376 PF02897 Peptidase_S9_N: Proly 95.4 0.29 6.3E-06 43.0 11.5 104 173-292 127-247 (414)
377 PHA02713 hypothetical protein; 95.4 1.4 3E-05 40.5 15.9 20 282-301 512-533 (557)
378 COG3391 Uncharacterized conser 95.3 1.7 3.8E-05 37.7 23.3 114 129-244 77-195 (381)
379 PF15390 DUF4613: Domain of un 95.3 1.5 3.3E-05 39.3 15.0 112 127-238 58-185 (671)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 1.9 4.2E-05 37.6 21.6 37 266-302 302-338 (415)
381 PF15390 DUF4613: Domain of un 95.0 2.2 4.7E-05 38.5 15.1 143 78-223 53-215 (671)
382 PF12234 Rav1p_C: RAVE protein 94.8 1.3 2.8E-05 40.7 13.8 69 170-238 30-103 (631)
383 KOG2395 Protein involved in va 94.8 0.82 1.8E-05 40.4 11.8 111 84-198 378-499 (644)
384 PF14727 PHTB1_N: PTHB1 N-term 94.6 2.8 6.1E-05 36.7 28.8 59 139-198 145-203 (418)
385 PHA02713 hypothetical protein; 94.5 3.8 8.1E-05 37.7 16.3 92 150-241 433-535 (557)
386 PF12657 TFIIIC_delta: Transcr 94.4 0.38 8.2E-06 36.6 8.3 28 273-300 87-120 (173)
387 PF14870 PSII_BNR: Photosynthe 94.2 2.9 6.2E-05 34.9 16.7 149 81-236 144-301 (302)
388 PF12234 Rav1p_C: RAVE protein 94.0 4.7 0.0001 37.2 15.6 109 87-198 35-155 (631)
389 PF14781 BBS2_N: Ciliary BBSom 94.0 1.6 3.5E-05 31.2 11.6 104 139-244 10-130 (136)
390 PF10313 DUF2415: Uncharacteri 93.9 0.43 9.3E-06 26.6 5.6 31 170-200 1-34 (43)
391 PF06433 Me-amine-dh_H: Methyl 93.5 4.1 8.8E-05 34.4 21.2 153 94-248 148-329 (342)
392 PF14870 PSII_BNR: Photosynthe 93.2 4.4 9.5E-05 33.8 28.5 116 165-295 140-256 (302)
393 PF10647 Gmad1: Lipoprotein Lp 93.1 4 8.7E-05 33.2 15.6 150 127-293 25-187 (253)
394 COG3490 Uncharacterized protei 93.0 4.4 9.5E-05 33.2 14.8 99 130-229 72-180 (366)
395 COG3204 Uncharacterized protei 93.0 4.5 9.7E-05 33.3 12.2 121 167-300 83-209 (316)
396 KOG1897 Damage-specific DNA bi 92.8 9.6 0.00021 36.7 18.0 152 83-239 776-942 (1096)
397 PF10168 Nup88: Nuclear pore c 92.8 4 8.7E-05 38.5 13.5 89 210-301 84-179 (717)
398 KOG3630 Nuclear pore complex, 92.7 2.1 4.5E-05 41.6 11.4 143 83-228 102-261 (1405)
399 KOG4499 Ca2+-binding protein R 92.6 4.3 9.4E-05 32.2 13.7 92 129-221 161-264 (310)
400 KOG4460 Nuclear pore complex, 92.4 7.6 0.00017 34.7 13.6 70 171-240 105-199 (741)
401 TIGR02276 beta_rpt_yvtn 40-res 92.4 0.89 1.9E-05 24.9 5.8 40 179-218 1-41 (42)
402 TIGR02604 Piru_Ver_Nterm putat 92.0 7.4 0.00016 33.6 15.1 140 83-229 15-202 (367)
403 PHA03098 kelch-like protein; P 91.9 9.9 0.00021 34.7 17.9 61 141-202 345-417 (534)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 91.6 2.9 6.4E-05 36.5 10.5 83 165-247 303-406 (415)
405 KOG4441 Proteins containing BT 91.3 12 0.00026 34.5 16.1 106 92-202 332-455 (571)
406 PF05694 SBP56: 56kDa selenium 91.1 10 0.00022 33.3 13.3 117 85-201 184-344 (461)
407 COG3490 Uncharacterized protei 91.1 7.6 0.00017 31.9 19.5 157 88-247 120-318 (366)
408 TIGR03074 PQQ_membr_DH membran 90.9 15 0.00034 35.1 18.3 108 141-248 196-353 (764)
409 PF08801 Nucleoporin_N: Nup133 90.3 12 0.00026 33.0 14.0 151 142-301 39-219 (422)
410 TIGR03606 non_repeat_PQQ dehyd 89.9 14 0.0003 32.9 14.5 54 169-222 29-90 (454)
411 PRK13684 Ycf48-like protein; P 89.8 12 0.00025 32.0 16.4 149 81-237 172-329 (334)
412 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.6 16 0.00035 33.3 16.0 107 141-249 71-199 (527)
413 PF10647 Gmad1: Lipoprotein Lp 89.4 10 0.00022 30.8 14.2 111 171-300 25-143 (253)
414 PF05096 Glu_cyclase_2: Glutam 89.4 10 0.00023 30.8 22.6 192 85-290 48-249 (264)
415 PF11715 Nup160: Nucleoporin N 89.1 2.7 5.8E-05 38.5 8.8 68 140-207 159-256 (547)
416 PF10313 DUF2415: Uncharacteri 89.1 1.6 3.5E-05 24.4 4.5 28 274-301 3-33 (43)
417 COG1520 FOG: WD40-like repeat 89.1 12 0.00026 32.3 12.3 106 141-247 70-179 (370)
418 KOG3630 Nuclear pore complex, 88.9 9.2 0.0002 37.5 11.8 93 146-238 121-227 (1405)
419 PF05096 Glu_cyclase_2: Glutam 88.8 12 0.00025 30.6 15.0 121 126-250 45-168 (264)
420 PF07569 Hira: TUP1-like enhan 88.8 6.7 0.00014 31.1 9.7 83 210-300 12-94 (219)
421 PF00930 DPPIV_N: Dipeptidyl p 88.0 16 0.00035 31.3 22.3 145 125-290 183-346 (353)
422 KOG1900 Nuclear pore complex, 87.8 19 0.00041 35.9 13.4 159 143-302 93-273 (1311)
423 KOG2247 WD40 repeat-containing 87.7 0.066 1.4E-06 46.4 -2.3 140 84-228 37-177 (615)
424 KOG2377 Uncharacterized conser 87.0 8.6 0.00019 33.8 9.6 101 80-184 65-168 (657)
425 PF07995 GSDH: Glucose / Sorbo 86.5 19 0.00042 30.6 11.8 49 171-221 3-59 (331)
426 PRK10115 protease 2; Provision 86.3 31 0.00067 32.8 14.7 108 172-299 129-253 (686)
427 PF14727 PHTB1_N: PTHB1 N-term 85.9 24 0.00051 31.1 13.4 58 181-238 37-104 (418)
428 COG3386 Gluconolactonase [Carb 85.6 21 0.00044 30.1 16.0 91 128-220 165-264 (307)
429 PF14583 Pectate_lyase22: Olig 85.0 25 0.00053 30.5 20.6 150 88-241 42-226 (386)
430 PF10214 Rrn6: RNA polymerase 84.9 39 0.00084 32.6 25.7 111 127-240 147-277 (765)
431 PHA03098 kelch-like protein; P 84.8 31 0.00068 31.5 13.9 53 149-202 406-467 (534)
432 KOG4441 Proteins containing BT 84.6 33 0.00071 31.8 13.0 106 92-203 380-503 (571)
433 PF08728 CRT10: CRT10; InterP 84.5 37 0.0008 32.1 14.4 116 83-198 102-245 (717)
434 KOG2377 Uncharacterized conser 84.3 29 0.00063 30.7 12.8 69 169-238 66-139 (657)
435 PF14583 Pectate_lyase22: Olig 84.2 27 0.00058 30.3 15.2 76 132-208 42-121 (386)
436 PF10214 Rrn6: RNA polymerase 83.4 40 0.00086 32.5 13.5 131 17-158 147-277 (765)
437 PF02897 Peptidase_S9_N: Proly 83.3 31 0.00067 30.2 26.2 199 18-242 126-360 (414)
438 KOG1916 Nuclear protein, conta 82.8 5.7 0.00012 37.8 7.3 79 19-110 184-264 (1283)
439 KOG2280 Vacuolar assembly/sort 81.3 49 0.0011 31.2 12.7 50 149-200 64-113 (829)
440 KOG4460 Nuclear pore complex, 81.2 42 0.00091 30.3 12.5 26 83-108 105-130 (741)
441 smart00564 PQQ beta-propeller 81.0 5.7 0.00012 20.2 4.2 24 183-206 8-31 (33)
442 COG5167 VID27 Protein involved 80.8 43 0.00092 30.2 12.8 96 141-238 482-590 (776)
443 PF07676 PD40: WD40-like Beta 80.3 7.1 0.00015 20.9 5.5 29 168-196 7-38 (39)
444 KOG2280 Vacuolar assembly/sort 80.0 55 0.0012 30.9 14.1 51 170-220 217-269 (829)
445 PHA02790 Kelch-like protein; P 79.2 49 0.0011 29.9 17.7 108 91-202 270-387 (480)
446 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.3 55 0.0012 30.0 22.8 66 141-207 122-197 (527)
447 COG5290 IkappaB kinase complex 78.2 6.5 0.00014 36.9 6.0 94 86-182 251-349 (1243)
448 PF12768 Rax2: Cortical protei 78.1 38 0.00082 28.1 10.6 88 150-238 17-122 (281)
449 PLN00033 photosystem II stabil 78.0 48 0.001 29.1 18.7 144 85-236 242-396 (398)
450 KOG3522 Predicted guanine nucl 77.8 16 0.00035 34.6 8.4 137 95-241 549-699 (925)
451 PF12657 TFIIIC_delta: Transcr 77.6 16 0.00036 27.6 7.4 31 170-200 86-122 (173)
452 PF03088 Str_synth: Strictosid 77.5 18 0.00039 24.0 6.8 45 187-231 33-77 (89)
453 PHA02790 Kelch-like protein; P 77.0 57 0.0012 29.5 14.3 104 91-203 317-427 (480)
454 PF13570 PQQ_3: PQQ-like domai 77.0 7.2 0.00016 21.1 4.0 19 221-239 21-39 (40)
455 COG3204 Uncharacterized protei 76.4 43 0.00094 27.8 18.3 113 125-239 85-210 (316)
456 COG5290 IkappaB kinase complex 75.9 76 0.0017 30.4 12.3 69 174-242 251-327 (1243)
457 PF01011 PQQ: PQQ enzyme repea 75.3 11 0.00023 20.2 4.4 26 184-209 3-28 (38)
458 TIGR03606 non_repeat_PQQ dehyd 74.7 63 0.0014 28.9 14.1 56 82-137 30-90 (454)
459 PF11715 Nup160: Nucleoporin N 71.5 37 0.00081 31.1 9.5 38 128-165 217-256 (547)
460 KOG1896 mRNA cleavage and poly 70.9 1.2E+02 0.0026 30.5 13.2 27 273-299 1183-1211(1366)
461 PF07995 GSDH: Glucose / Sorbo 70.5 67 0.0014 27.3 13.6 53 83-136 3-59 (331)
462 TIGR02604 Piru_Ver_Nterm putat 69.8 73 0.0016 27.5 16.7 61 164-226 66-139 (367)
463 PRK13684 Ycf48-like protein; P 69.7 70 0.0015 27.3 21.1 107 125-235 172-284 (334)
464 PF01731 Arylesterase: Arylest 69.3 30 0.00064 22.8 6.7 48 149-199 36-84 (86)
465 KOG1897 Damage-specific DNA bi 68.1 1.3E+02 0.0028 29.7 18.8 75 125-199 530-613 (1096)
466 PF14761 HPS3_N: Hermansky-Pud 67.9 30 0.00064 27.2 6.7 47 182-228 29-77 (215)
467 KOG3616 Selective LIM binding 67.4 12 0.00027 35.0 5.1 34 170-203 15-48 (1636)
468 COG5167 VID27 Protein involved 66.8 1E+02 0.0022 28.0 12.2 60 180-239 572-632 (776)
469 TIGR03074 PQQ_membr_DH membran 66.3 1.3E+02 0.0028 29.1 23.8 68 140-208 261-353 (764)
470 PF03088 Str_synth: Strictosid 66.3 29 0.00062 23.0 5.5 42 145-187 33-74 (89)
471 PF05935 Arylsulfotrans: Aryls 65.6 1.1E+02 0.0023 27.8 17.1 98 147-249 126-241 (477)
472 KOG3616 Selective LIM binding 65.3 1.3E+02 0.0027 28.8 10.9 66 83-156 16-82 (1636)
473 PF01436 NHL: NHL repeat; Int 64.8 16 0.00034 18.0 3.9 25 84-108 4-28 (28)
474 COG1520 FOG: WD40-like repeat 62.7 1E+02 0.0022 26.6 19.2 107 141-248 113-226 (370)
475 PF03022 MRJP: Major royal jel 62.3 91 0.002 25.9 12.4 29 273-301 187-215 (287)
476 KOG1916 Nuclear protein, conta 61.9 27 0.00058 33.7 6.3 77 88-169 190-282 (1283)
477 COG4590 ABC-type uncharacteriz 61.0 96 0.0021 27.6 9.0 156 84-242 223-389 (733)
478 COG5276 Uncharacterized conser 61.0 99 0.0021 25.9 18.5 139 83-229 88-232 (370)
479 KOG2100 Dipeptidyl aminopeptid 59.9 1.5E+02 0.0032 28.7 11.0 63 176-238 103-175 (755)
480 PF10395 Utp8: Utp8 family; I 59.4 1.6E+02 0.0035 27.8 15.8 161 81-248 129-314 (670)
481 KOG1898 Splicing factor 3b, su 59.0 2E+02 0.0043 28.7 12.1 98 148-247 852-970 (1205)
482 TIGR03118 PEPCTERM_chp_1 conse 58.2 1.1E+02 0.0025 25.7 23.5 217 19-248 26-288 (336)
483 PF14761 HPS3_N: Hermansky-Pud 58.0 92 0.002 24.6 9.9 47 142-189 31-79 (215)
484 KOG1983 Tomosyn and related SN 57.9 1.9E+02 0.0042 29.0 11.6 30 83-112 37-66 (993)
485 PF05935 Arylsulfotrans: Aryls 56.0 1.6E+02 0.0034 26.7 17.4 112 131-248 153-310 (477)
486 PF14781 BBS2_N: Ciliary BBSom 55.7 76 0.0017 23.0 12.9 111 93-207 10-133 (136)
487 PF14269 Arylsulfotran_2: Aryl 48.4 95 0.0021 26.0 7.1 37 172-208 146-182 (299)
488 PF12341 DUF3639: Protein of u 48.2 35 0.00076 16.9 3.8 24 127-154 3-26 (27)
489 PF03022 MRJP: Major royal jel 46.5 1.7E+02 0.0037 24.3 10.7 56 192-247 35-104 (287)
490 PF14779 BBS1: Ciliary BBSome 46.0 1.5E+02 0.0033 24.2 7.6 57 140-196 196-255 (257)
491 PF07250 Glyoxal_oxid_N: Glyox 45.8 1.6E+02 0.0035 23.8 9.9 48 152-199 49-99 (243)
492 KOG2247 WD40 repeat-containing 45.1 6.8 0.00015 34.7 -0.1 140 22-192 41-181 (615)
493 KOG2103 Uncharacterized conser 44.0 1.2E+02 0.0026 29.1 7.4 77 170-249 36-113 (910)
494 PF13449 Phytase-like: Esteras 42.7 2.1E+02 0.0045 24.3 12.6 118 170-293 20-168 (326)
495 KOG4499 Ca2+-binding protein R 41.9 1.9E+02 0.0041 23.5 16.4 80 171-250 159-252 (310)
496 PF14779 BBS1: Ciliary BBSome 39.3 1.6E+02 0.0034 24.1 6.7 68 169-236 176-255 (257)
497 KOG1896 mRNA cleavage and poly 39.1 4.3E+02 0.0092 27.1 10.4 118 12-156 1094-1212(1366)
498 PF08954 DUF1900: Domain of un 38.8 1.5E+02 0.0033 21.5 6.2 52 170-221 11-67 (136)
499 PF12768 Rax2: Cortical protei 38.1 2.4E+02 0.0051 23.5 10.6 80 81-160 36-126 (281)
500 TIGR03118 PEPCTERM_chp_1 conse 34.7 2.8E+02 0.0062 23.4 17.1 111 129-241 26-172 (336)
No 1
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-54 Score=330.16 Aligned_cols=291 Identities=71% Similarity=1.180 Sum_probs=269.8
Q ss_pred CccceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc----
Q 048118 1 MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ---- 76 (303)
Q Consensus 1 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 76 (303)
|++++.++++|++|++-|+.++..+.+.+.+++++.|.++.+|++...+..++.+.+.+.+|+++|+.+.++++++
T Consensus 1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 8899999999999999999999999889999999999999999999888889999999999999999999998874
Q ss_pred --------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCC
Q 048118 77 --------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136 (303)
Q Consensus 77 --------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 136 (303)
|.+|+..|.+++|+++.+++++|+.|++|++|+..+.+++.+... .+.++|.|++|+|+
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~-~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED-SHREWVSCVRFSPN 159 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC-CCcCcEEEEEEcCC
Confidence 459999999999999999999999999999999999988877643 34889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEE
Q 048118 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216 (303)
Q Consensus 137 ~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~ 216 (303)
...+.++++++|++|++||+++.+....+.+|++.++.+.+||||.++++|+.||.+.+||++.++.++++.....|.++
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl 239 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSL 239 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeE
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR 296 (303)
Q Consensus 217 ~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~ 296 (303)
+|+|+.++|+.+.+..|+|||++++..+.+++.+.... ..+.....+.+++|++||..|+.|..||.|+
T Consensus 240 ~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-----------s~~~~~~~clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 240 CFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP-----------SSKAGDPICLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred EecCCceeEeeccCCceEEEeccchhhhhhcccccccc-----------ccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence 99999999999999999999999999998887654322 2344567889999999999999999999999
Q ss_pred EEecccC
Q 048118 297 VWGIGRY 303 (303)
Q Consensus 297 ~w~~~~~ 303 (303)
+|.+..|
T Consensus 309 v~qv~~~ 315 (315)
T KOG0279|consen 309 VWQVAKS 315 (315)
T ss_pred EEEeecC
Confidence 9999875
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=279.34 Aligned_cols=249 Identities=27% Similarity=0.438 Sum_probs=217.9
Q ss_pred ceeecccccccccceeeeecCCC-CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118 4 GLVLKGTMRAHTDMVTAIATPID-NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK 82 (303)
Q Consensus 4 ~~~~~~~~~~h~~~v~~v~~~~~-~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~ 82 (303)
+..++.+|++|...|.++.|+|. ...-+|||+.||++++|+....... .++.+|..
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l-----------------------~~l~gH~~ 262 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL-----------------------QDLEGHLA 262 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch-----------------------hhhhcchh
Confidence 44677789999999999999997 4568999999999999998653221 25678999
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR 162 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~ 162 (303)
+|..++|+|+|++|+|++.|.+.++||+..... ...+++|...|.+++|+|++ ..+++|+.|..-++||++++.++
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E--lL~QEGHs~~v~~iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~i 338 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE--LLLQEGHSKGVFSIAFQPDG--SLAATGGLDSLGRVWDLRTGRCI 338 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccchh--hHhhcccccccceeEecCCC--ceeeccCccchhheeecccCcEE
Confidence 999999999999999999999999999865432 34457899999999999997 57899999999999999999999
Q ss_pred EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcC-CCeEEE-EEcCCcEEEEeCC
Q 048118 163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSP-NRYWLC-AATEQSIKIWDLE 239 (303)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~-~~~~l~-~~~~~~i~iwd~~ 239 (303)
..+.+|..+|.++.|+|+|.+|||||.|++++|||++....+++++. ...|..+.|+| .|++|+ ++.|+.+++|..+
T Consensus 339 m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 99999999999999999999999999999999999999988988864 57899999999 466665 5569999999998
Q ss_pred CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
+...++. +.+|..-|.+++.+|++.++++++.|+++++|.
T Consensus 419 ~~~~~ks--------------------LaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKS--------------------LAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred Ccccchh--------------------hcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 8876654 456777789999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-40 Score=263.21 Aligned_cols=259 Identities=31% Similarity=0.525 Sum_probs=213.6
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------------
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ------------- 76 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------- 76 (303)
.+.||.++|.++.|+|++ ..+||||.|.++||||+.... +.....+|.++|.++.|+|+++
T Consensus 110 S~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeT-----p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTET-----PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred ccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCC-----cceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 588999999999999965 689999999999999997543 3455678999999999999874
Q ss_pred ------------eecccCCEEEEEEee-----CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCC
Q 048118 77 ------------FVGHTKDVLSVAFSI-----DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ 139 (303)
Q Consensus 77 ------------~~~h~~~i~~i~~~~-----~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 139 (303)
+.+|+.-|++++|.| ..++|++++.||.|+|||+....- +....+|+.+|+|++|.-+
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~--~~~lsgHT~~VTCvrwGG~--- 258 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC--VRTLSGHTASVTCVRWGGE--- 258 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE--EEEeccCccceEEEEEcCC---
Confidence 458999999999986 456899999999999999864322 2223579999999999754
Q ss_pred CEEEEEeCCCcEEEEECCCce-----------------------------------------------------------
Q 048118 140 PTIVSASWDRTVKVWNLSNCK----------------------------------------------------------- 160 (303)
Q Consensus 140 ~~~~~~~~dg~i~iwd~~~~~----------------------------------------------------------- 160 (303)
.++.+|+.|++|++|+...++
T Consensus 259 gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 259 GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 378888999999999753221
Q ss_pred --------------------eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEc
Q 048118 161 --------------------LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFS 219 (303)
Q Consensus 161 --------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s 219 (303)
++..+.+|..-|+.+.||||++++|++|.|..|++||.++|+.+.++. +-..|++++|+
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws 418 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS 418 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec
Confidence 111234788889999999999999999999999999999999988886 45789999999
Q ss_pred CCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118 220 PNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 220 ~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w 298 (303)
.|..+|++ +.|..+++|++++.++..++ .+|.-.+..++|+|||..+++|+.|..+++|
T Consensus 419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DL--------------------pGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDL--------------------PGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cCccEEEEcCCCceEEEEEeeeeeecccC--------------------CCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 99766655 56899999999998776543 3444556789999999999999999999999
Q ss_pred e
Q 048118 299 G 299 (303)
Q Consensus 299 ~ 299 (303)
.
T Consensus 479 ~ 479 (480)
T KOG0271|consen 479 R 479 (480)
T ss_pred c
Confidence 4
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=239.11 Aligned_cols=265 Identities=26% Similarity=0.399 Sum_probs=222.5
Q ss_pred eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc--------
Q 048118 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------- 76 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------- 76 (303)
+...++|++|...|+++.|+++. ++++++|.||.+.|||.....|.. -.+..+.+|-..+++|.++
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~h-----aipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVH-----AIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred eeeEEEecccccceeeeEecCCc-CeEEeeccCCeEEEEEccccccee-----EEecCceeEEEEEECCCCCeEEecCcC
Confidence 44567899999999999999875 689999999999999986544432 2333456666667777653
Q ss_pred ----------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEc
Q 048118 77 ----------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFS 134 (303)
Q Consensus 77 ----------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~ 134 (303)
+.+|++-+.++.|-++ .+|+|++.|.++-+||++.... +....+|...|.++.++
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~--~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ--TQVFHGHTGDVMSLSLS 195 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE--EEEecCCcccEEEEecC
Confidence 4589999999999885 4788999999999999966443 34456899999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC---C
Q 048118 135 PNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG---A 211 (303)
Q Consensus 135 ~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~ 211 (303)
|.. .+.+++|+.|++.++||++.+.++++|.+|...|++++|.|+|.-|++|++|+++++||++..+.+..+... .
T Consensus 196 p~~-~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 196 PSD-GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred CCC-CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 953 468999999999999999999999999999999999999999999999999999999999999988877643 5
Q ss_pred eEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118 212 VIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY 290 (303)
Q Consensus 212 ~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs 290 (303)
.|++++||..|.+|. +..|..+.+||.-.++.+.. +.+|...+.++..+|||..|+|||
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~--------------------L~GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV--------------------LAGHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEE--------------------eeccCCeeEEEEECCCCcEEEecc
Confidence 799999999987664 56789999999876665543 346777889999999999999999
Q ss_pred cCCeEEEEe
Q 048118 291 TDGVIRVWG 299 (303)
Q Consensus 291 ~Dg~v~~w~ 299 (303)
.|-++|+|.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 5
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-36 Score=228.05 Aligned_cols=279 Identities=22% Similarity=0.364 Sum_probs=216.9
Q ss_pred cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce-----
Q 048118 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF----- 77 (303)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----- 77 (303)
++|.+++.+.+|++.+..++|+|..+..|||||.|..||+|+... ............+|...|+.++++|.+++
T Consensus 2 ~~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 2 DRLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred ccceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence 447888899999999999999997556899999999999999874 22222222233468888999999998764
Q ss_pred ---------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcC
Q 048118 78 ---------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSP 135 (303)
Q Consensus 78 ---------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 135 (303)
.||..+|-+++|+++|.+||||+.|++|-+|...... .........|+..|..+.|||
T Consensus 81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 3899999999999999999999999999999875332 223334457888899999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECC---CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCe
Q 048118 136 NTLQPTIVSASWDRTVKVWNLS---NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV 212 (303)
Q Consensus 136 ~~~~~~~~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 212 (303)
.. ..|++++.|.+|++|+-. +..+..++.+|.+.|.+++|+|.|..|++++.|++++||-..+.- .......
T Consensus 161 t~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~ 235 (312)
T KOG0645|consen 161 TE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRA 235 (312)
T ss_pred Cc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccc
Confidence 63 579999999999999765 346889999999999999999999999999999999999765321 1122456
Q ss_pred EEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC-CCEEEEeec
Q 048118 213 IHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-GSTLFSGYT 291 (303)
Q Consensus 213 v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~gs~ 291 (303)
++.++|. ++.+..++.|+.|++|.-...-.-..++. ....-..|..-++++.|.|. ...|++|+.
T Consensus 236 ~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l-------------~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D 301 (312)
T KOG0645|consen 236 LYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNL-------------LAKKEGAHEVDVNSVQWNPKVSNRLASGGD 301 (312)
T ss_pred eEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHH-------------HHhhhcccccccceEEEcCCCCCceeecCC
Confidence 8889998 77777788899999997542100000100 01112345667899999995 679999999
Q ss_pred CCeEEEEecc
Q 048118 292 DGVIRVWGIG 301 (303)
Q Consensus 292 Dg~v~~w~~~ 301 (303)
||.|++|.+.
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999874
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=250.09 Aligned_cols=247 Identities=28% Similarity=0.460 Sum_probs=206.6
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~ 85 (303)
.+...=-+-..+|....|++++ ..|||||-+|.+++|+....... ..+.+|++.|.
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~-----------------------~~l~gH~~~v~ 221 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLL-----------------------QTLRGHTSRVG 221 (459)
T ss_pred hhhhhhccCCCcceeeEeecCC-CeEEEeecCCceeEeecCCccee-----------------------EEEecccccee
Confidence 3333344556788899999764 68999999999999987643211 14678999999
Q ss_pred EEEEeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118 86 SVAFSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163 (303)
Q Consensus 86 ~i~~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 163 (303)
++.|+|. +..+|||+.||++++|++..+. .+.....|...|..++|||++ .++++++.|.+-++||+.+++...
T Consensus 222 ~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 222 AAVFHPVDSDLNLATASADGTVKLWKLSQET--PLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred eEEEccCCCccceeeeccCCceeeeccCCCc--chhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhH
Confidence 9999997 5689999999999999987643 234446788889999999997 479999999999999999988777
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCC
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA-TEQSIKIWDLESK 241 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~ 241 (303)
...+|...|.+++|+|||.++++|+.|..-+|||++++.++-.+.. ...|.+++|+|+|+.+|++ .|+.++|||++..
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 7789999999999999999999999999999999999999877754 5689999999999888765 6999999999987
Q ss_pred ceeeeeeeccccccccccCccceeeccccceeEEEEEEcC-CCCEEEEeecCCeEEEEec
Q 048118 242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~gs~Dg~v~~w~~ 300 (303)
+.+. .+..|...|+.+.|+| .|.+|+|+|.|+++++|.-
T Consensus 378 ~~ly--------------------~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 378 SELY--------------------TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred ccce--------------------ecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 6543 2445666678899999 5779999999999999964
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-35 Score=222.69 Aligned_cols=246 Identities=24% Similarity=0.472 Sum_probs=200.9
Q ss_pred CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------------------------eeccc
Q 048118 27 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------------------------FVGHT 81 (303)
Q Consensus 27 ~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------------~~~h~ 81 (303)
.+-+|+|+|.|.+||||.... |.+.+..++...-|+.+.+.|+++ |.+|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~t-----G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALT-----GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred CceEEEeccCcceeeeeehhc-----CeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence 456899999999999998753 677888888888888888888763 45899
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~ 161 (303)
..|..+.|..+|++++||++||++||||.+.. ..+..-.+..+|+++..+|+. ..+++|..+|.|++||+....+
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~---~~qR~~~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---SCQRNYQHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCc---ccchhccCCCCcceEEecCCc--ceEEeecCCCcEEEEEccCCcc
Confidence 99999999999999999999999999998652 222223467889999999985 5799999999999999988766
Q ss_pred EEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce------EEEec-CCCeEEEEEEcCCCeEEEE-EcCCc
Q 048118 162 RATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR------LYSLD-AGAVIHALCFSPNRYWLCA-ATEQS 232 (303)
Q Consensus 162 ~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~ 232 (303)
...+. .-..+|.++.+.|+|.+++.+...|++++|++...+. +.+++ ....+..+.+||++++|++ ++|..
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence 55543 3346799999999999999999999999999976542 23333 2456888899999877765 56899
Q ss_pred EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
++||+.++- +..+ ..++++..++++.+||.|+.||+||++|+.+|+|++.
T Consensus 239 v~iwn~~~~-~kle------------------~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 239 VKIWNTDDF-FKLE------------------LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEEEecCCc-eeeE------------------EEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 999999876 2222 2345677899999999999999999999999999984
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.1e-36 Score=258.31 Aligned_cols=262 Identities=29% Similarity=0.438 Sum_probs=209.2
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcc--ccce-eeeeecCCCcceEEEEeCC-----CCceecccCCEEE
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEK--TYGV-ARRRLTGHSHFVQDVVLSS-----DGQFVGHTKDVLS 86 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~--~~~~-~~~~~~~~~~~i~~~~~~~-----~~~~~~h~~~i~~ 86 (303)
...++|..|++++ .++|-|-.|..|++|.+.+... .... ......--+.-+..-.... ...+.||+++|+.
T Consensus 378 ~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred CCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3568899999776 4899999999999999874210 0000 0000000000000000111 1237799999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA 166 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 166 (303)
+.|+|+.++|++|+.|+++|+|.+....- .....+|..+|..+.|+|.+ .+|++++.|++-++|.....++.+.+.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~--~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSC--LVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeecccccceeeccCCcceeeeeccccee--EEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999999999999999999865433 23335899999999999986 589999999999999998888899999
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCcee
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIV 244 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~ 244 (303)
+|.+.|.|+.|+|+..++++||.|++||+||+.+|..++.+. +..+|.+++|||.|.+|+++ .|+.|.+||+.+++++
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 999999999999999999999999999999999999988875 46799999999999888765 5899999999999887
Q ss_pred eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 245 EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
..+. +|...+.++.||.+|..||+|+.|..|++||+-
T Consensus 613 ~~l~--------------------~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 613 KQLK--------------------GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred hhhh--------------------cccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 6544 334456889999999999999999999999973
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5e-35 Score=251.68 Aligned_cols=255 Identities=28% Similarity=0.454 Sum_probs=197.2
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
...++.||.++|+..+|+|++ ++|++||.|+++|+|.+.... +++ .|.||..+|+.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s------------------~~V-----~y~GH~~PVwd 498 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS------------------CLV-----IYKGHLAPVWD 498 (707)
T ss_pred eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccce------------------eEE-----EecCCCcceee
Confidence 344689999999999999985 799999999999999875321 111 36789999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA 166 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 166 (303)
+.|+|-|-+|||++.|++.++|.... ........+|...+.|++|||+. .++++|+.|.++|+||..++..++.|.
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~--~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDH--NKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred EEecCCceEEEecCCCceeeeeeccc--CCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEec
Confidence 99999999999999999999998643 22333345788889999999996 689999999999999999999999999
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCcee
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIV 244 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~ 244 (303)
+|.++|++++|||+|++|++|+.||.|++||+..+..+..+ .+...+.++.|+.+|.+|+++ .|++|++||+......
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999999999999999999999999998887765 457889999999999877765 6899999998643222
Q ss_pred eee-eeccc--cccccc-cCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118 245 EDL-KVDLK--TEAEKS-EATTATTTIKKKNIYCTSLNWSVDGSTLFSG 289 (303)
Q Consensus 245 ~~~-~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g 289 (303)
..+ .+... ...... ........+..+...+..+.|...+-.|++|
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 655 LNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 000 00000 000001 1111223344445566778887666555555
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.2e-35 Score=233.12 Aligned_cols=260 Identities=22% Similarity=0.338 Sum_probs=212.1
Q ss_pred ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee--------------
Q 048118 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV-------------- 78 (303)
Q Consensus 13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------- 78 (303)
.-+..|+.|.|.|++ +.|+||+..|.+.+|+..... ..-.+++|..+|+...+++++.+.
T Consensus 94 Kvkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fn-----FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFN-----FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred ccccceeeEEEcCCC-ceeEeecccccEEEecCceee-----HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 334578999999986 579999999999999874321 122357899999999999887532
Q ss_pred ----------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118 79 ----------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD 148 (303)
Q Consensus 79 ----------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 148 (303)
.|...|.+++|+|+...|+||+.|+.|+|||........+ ..+|.-.|.+++|||.. ..+++++.|
T Consensus 168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwdVksvdWHP~k--gLiasgskD 243 (464)
T KOG0284|consen 168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWDVKSVDWHPTK--GLIASGSKD 243 (464)
T ss_pred chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--eccCCCCcceeccCCcc--ceeEEccCC
Confidence 4558999999999999999999999999999753221111 14677789999999974 589999999
Q ss_pred CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCC--CeEE
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPN--RYWL 225 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~--~~~l 225 (303)
..|++||.+++.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++.+.++++. +...+.++.|+|- +.+.
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee
Confidence 999999999999999999999999999999999999999999999999999877777775 5678999999995 4455
Q ss_pred EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 226 CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 226 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.++.||.|..|.+...+.+..+. ..|...+++++|+|-|..|++|+.|.++++|.-+
T Consensus 324 sgg~Dgsvvh~~v~~~~p~~~i~-------------------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPLGEIP-------------------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccCCCceEEEeccccccccCCC-------------------cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 66789999999986333222111 2344567999999999999999999999999654
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-33 Score=218.90 Aligned_cols=264 Identities=30% Similarity=0.548 Sum_probs=224.6
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce--------
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF-------- 77 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------- 77 (303)
.+...+.+|.-+|+.+-++|.. -.+++++.|.+|++||....+ ..+.+.+|...+.++.+...|++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~-----~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGE-----LERSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchh-----hhhhhhccccceeEEEEecCccEEEecCCcc
Confidence 5566788999999999999875 588999999999999997643 24567788888888887766542
Q ss_pred -----------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCC
Q 048118 78 -----------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP 140 (303)
Q Consensus 78 -----------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 140 (303)
.+|...|.+++|-|.|.++++++.|.+|+.|+... .+.+....+|.+++..++.+.++ .
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g~cv~t~~~h~ewvr~v~v~~DG--t 248 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT--GYCVKTFPGHSEWVRMVRVNQDG--T 248 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc--ceeEEeccCchHhEEEEEecCCe--e
Confidence 48999999999999999999999999999999854 23344446788999999998876 5
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCC---------------CCEEEEEeCCCeEEEEeCCCCceEE
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD---------------GSLCASGGKDGVILLWDLAEGKRLY 205 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~d~~v~iwd~~~~~~~~ 205 (303)
.+++++.|..+++|-+.++++...+++|.-+|.+++|-|. ++++.+++.|++|++||+.++.++.
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence 7899999999999999999888999999999999998653 2589999999999999999999999
Q ss_pred Eec-CCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC
Q 048118 206 SLD-AGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG 283 (303)
Q Consensus 206 ~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 283 (303)
++. +...|+.++|+|.|+++++ +.|+++++||+++++.++.+. .+..++++++|+.+.
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------------ah~hfvt~lDfh~~~ 388 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------------AHEHFVTSLDFHKTA 388 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--------------------CCcceeEEEecCCCC
Confidence 985 5789999999999977765 568899999999987765443 356788999999999
Q ss_pred CEEEEeecCCeEEEEe
Q 048118 284 STLFSGYTDGVIRVWG 299 (303)
Q Consensus 284 ~~l~~gs~Dg~v~~w~ 299 (303)
++++||+-|.++++|-
T Consensus 389 p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceEEeccccceeeeee
Confidence 9999999999999994
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-33 Score=226.89 Aligned_cols=237 Identities=24% Similarity=0.386 Sum_probs=193.7
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ 95 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 95 (303)
..|++++|+-+ +..||||+.||.+++|+.... ... .+..|+++|.++.|+..|.+
T Consensus 236 kdVT~L~Wn~~-G~~LatG~~~G~~riw~~~G~------l~~------------------tl~~HkgPI~slKWnk~G~y 290 (524)
T KOG0273|consen 236 KDVTSLDWNND-GTLLATGSEDGEARIWNKDGN------LIS------------------TLGQHKGPIFSLKWNKKGTY 290 (524)
T ss_pred CCcceEEecCC-CCeEEEeecCcEEEEEecCch------hhh------------------hhhccCCceEEEEEcCCCCE
Confidence 57999999965 478999999999999987521 111 24469999999999999999
Q ss_pred EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEE
Q 048118 96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 175 (303)
Q Consensus 96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 175 (303)
+++++.|+++.+||......++. ...|+.+-..+.|-.+ ..|++++.|+.|+++.+....+..++.+|.++|.++
T Consensus 291 ilS~~vD~ttilwd~~~g~~~q~--f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 291 ILSGGVDGTTILWDAHTGTVKQQ--FEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred EEeccCCccEEEEeccCceEEEe--eeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 99999999999999865544332 2345555455666544 369999999999999998888999999999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCC----------eEEEEEcCCcEEEEeCCCCcee
Q 048118 176 AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNR----------YWLCAATEQSIKIWDLESKSIV 244 (303)
Q Consensus 176 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~----------~~l~~~~~~~i~iwd~~~~~~~ 244 (303)
.|+|.+.+|+++|.|++++||+.........+.. ...|+.+.|+|.+ .+++++.|+.+++||+..+..+
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 9999999999999999999999877666555543 4578888898853 3456778999999999887654
Q ss_pred eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 245 EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
. .+.+|...+.+++|||+|+++|+|+-||.|++|++..
T Consensus 446 ~--------------------~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 446 H--------------------TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred E--------------------eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 3 3556777889999999999999999999999998743
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-32 Score=232.02 Aligned_cols=265 Identities=26% Similarity=0.441 Sum_probs=203.8
Q ss_pred cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+....+|-..+++++++|++ .++|||+.||.|++||... +.|.. .|..|+..|+.+
T Consensus 343 VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S-----gfC~v------------------TFteHts~Vt~v 398 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS-----GFCFV------------------TFTEHTSGVTAV 398 (893)
T ss_pred eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC-----ceEEE------------------EeccCCCceEEE
Confidence 33567899999999999975 6999999999999999854 34433 345688999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-cEEEEECCCceeEEEEc
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-TVKVWNLSNCKLRATLA 166 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-~i~iwd~~~~~~~~~~~ 166 (303)
+|+..|..+++.+.||+||.||+.....+.... .+......|++..|.+ ..+++|+.|. .|.+|+++++++...+.
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft-~P~p~QfscvavD~sG--elV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT-SPEPIQFSCVAVDPSG--ELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccceeeeec-CCCceeeeEEEEcCCC--CEEEeeccceEEEEEEEeecCeeeehhc
Confidence 999999999999999999999985433222211 1234456788888876 3455566554 59999999999999999
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCcee
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIV 244 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~ 244 (303)
+|.++|.+++|+|.+..|+++|.|.+|++||+-.. ..+-++...+-+..++|+|+|.-+|+++ ||+|.+||.+.+...
T Consensus 476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 99999999999999999999999999999998644 3445667778899999999997777665 999999999877665
Q ss_pred eeeee--ccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 245 EDLKV--DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 245 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
..+.. ++.......+..+... ....-..+.+++|+||+.+++|+..+.|.+|++.
T Consensus 556 ~~IdgrkD~~~gR~~~D~~ta~~--sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 556 GSIDGRKDLSGGRKETDRITAEN--SAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred ccccchhhccccccccceeehhh--cccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 44332 2222222222222211 1223456889999999999999999999999874
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=215.85 Aligned_cols=272 Identities=26% Similarity=0.420 Sum_probs=224.7
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ--------- 76 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------- 76 (303)
.+.+.+.+|.+=|-+|++.|.+ ..|+||+.|++++|||++. +.....+++|-..+..+.+++...
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat-----g~LkltltGhi~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT-----GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred eehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc-----CeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence 4566789999999999999975 7999999999999999986 345667888888888888887543
Q ss_pred ---------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE
Q 048118 77 ---------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT 141 (303)
Q Consensus 77 ---------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 141 (303)
|-||-+.|++++.+|.-..|+||+.|..+||||.+.. ..+....+|..+|..+.+.|-. +.
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~d--pq 291 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTD--PQ 291 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc--ceEEEecCCCCcceeEEeecCC--Cc
Confidence 4599999999999999999999999999999998653 3344456799999999988754 46
Q ss_pred EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcC
Q 048118 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSP 220 (303)
Q Consensus 142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~ 220 (303)
+++|+.|++|++||++.++...++..|+..+.+++.+|....||+++.| .++-|++..+..+..+. ....+++++.+.
T Consensus 292 vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc
Confidence 9999999999999999999999999999999999999999899999877 58999999998877764 356789999999
Q ss_pred CCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 221 NRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 221 ~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
|+.+++++..|.|.+||++++--.........+.... ....+.+.+|.-.|..|++|..|.+|++|.-
T Consensus 371 D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~------------sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 371 DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE------------SEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred CceEEEcCCceEEEEEecCcCcccccccccccCCccc------------cccceeEEeecccCceEEeccCCcceEEEec
Confidence 9999999999999999999886554432222221111 1123456778888999999999999999964
No 15
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-33 Score=239.61 Aligned_cols=272 Identities=28% Similarity=0.448 Sum_probs=202.0
Q ss_pred ceeeccccc-ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcccc------c------------eee--------
Q 048118 4 GLVLKGTMR-AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY------G------------VAR-------- 56 (303)
Q Consensus 4 ~~~~~~~~~-~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~------~------------~~~-------- 56 (303)
.+.+.+.+. +|.++|+++.|++++ .||||||.|+.|+||.+...+... . .+.
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence 356667777 999999999999875 699999999999999875511100 0 000
Q ss_pred eee----cC-CCcce----EEEEeC--CCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCC
Q 048118 57 RRL----TG-HSHFV----QDVVLS--SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAH 124 (303)
Q Consensus 57 ~~~----~~-~~~~i----~~~~~~--~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~ 124 (303)
... .+ ++..+ ....+. |-..|.||++.|..+.|+.++ +|++++.|++||||++.. .+...+ .|
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----~H 408 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----SH 408 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE----ec
Confidence 000 00 00000 000011 112478999999999999876 788999999999999853 344333 48
Q ss_pred ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE
Q 048118 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 204 (303)
Q Consensus 125 ~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 204 (303)
++.|+|++|+|.+ ..+|++|+-|+.+|+|++...+...-... ...|++++|.|+|+..++|+.+|.+++|+....+..
T Consensus 409 ndfVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 409 NDFVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred CCeeEEEEecccC-CCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 8999999999976 46899999999999999987776554333 478999999999999999999999999998876554
Q ss_pred EEec---------CCCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecccccee
Q 048118 205 YSLD---------AGAVIHALCFSPNR--YWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIY 273 (303)
Q Consensus 205 ~~~~---------~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (303)
..+. ....|+.+.|.|.. .+|+++.|.+|+|||.+..+++.+++-.... ...
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~-----------------~SQ 549 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT-----------------SSQ 549 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC-----------------Ccc
Confidence 3331 12379999999875 4899999999999999888887766532111 111
Q ss_pred EEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 274 CTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 274 ~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
....|+.||++|++|+.|.-|++|+..
T Consensus 550 -~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 550 -ISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred -eeeeEccCCCEEEEeecCceEEEEeCC
Confidence 346788999999999999999999963
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=231.09 Aligned_cols=246 Identities=22% Similarity=0.442 Sum_probs=200.5
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
++.++.+|++.|+++.|.|....+|++||.|+.|+||+.-... .+.+ .|.+|..+|..
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----~~lr------------------tf~gH~k~Vrd 263 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----RCLR------------------TFKGHRKPVRD 263 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----ceeh------------------hhhcchhhhhh
Confidence 4557999999999999999667899999999999999986422 1111 46789999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL 165 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 165 (303)
++|+++|..|++++.|+.|++||+.... ...+. -...+.|++|+|++ +..+++|+.|+.|+.||+++++.++++
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHH
Confidence 9999999999999999999999986432 22222 23357899999987 678999999999999999999999999
Q ss_pred cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--------------------------------c-----
Q 048118 166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--------------------------------D----- 208 (303)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--------------------------------~----- 208 (303)
..|-+.|..+.|-++++.++++++|+.++||+.+.+-.+..+ .
T Consensus 339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 999999999999999999999999999999998654221110 0
Q ss_pred ------------CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEE
Q 048118 209 ------------AGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCT 275 (303)
Q Consensus 209 ------------~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (303)
....-..+.|||||.+|+++ ++|.+++||+++.+++..++ .+...|.
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk--------------------ah~~~ci 478 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK--------------------AHDQPCI 478 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc--------------------cCCcceE
Confidence 01123458899999877766 59999999999988876554 3445678
Q ss_pred EEEEcCCCC-EEEEeecCCeEEEEe
Q 048118 276 SLNWSVDGS-TLFSGYTDGVIRVWG 299 (303)
Q Consensus 276 ~~~~sp~~~-~l~~gs~Dg~v~~w~ 299 (303)
.+.|+|... .||+|+.||.|++|+
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 899999865 899999999999996
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.5e-31 Score=215.67 Aligned_cols=262 Identities=43% Similarity=0.690 Sum_probs=208.6
Q ss_pred cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC------------
Q 048118 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG------------ 75 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------ 75 (303)
+.++++|.+.|+++.|+|++ +++++++.|+.+++|++.... ....+..|...+..+.+.+++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred chHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 34678999999999999874 689999999999999987543 122333444555555555443
Q ss_pred ------------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118 76 ------------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV 143 (303)
Q Consensus 76 ------------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 143 (303)
.+..|...|.++.|++++.++++++.|+.|++|+....... .....|...+.+++|+|+. ..++
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~--~~l~ 151 (289)
T cd00200 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL--TTLRGHTDWVNSVAFSPDG--TFVA 151 (289)
T ss_pred EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE--EEeccCCCcEEEEEEcCcC--CEEE
Confidence 13467778999999999889998888999999998632221 2223567789999999973 4666
Q ss_pred EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCC
Q 048118 144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNR 222 (303)
Q Consensus 144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~ 222 (303)
+++.++.|++||+++++....+..|...+.++.|+|+++.+++++.|+.+++||++.++.+..+ .....+.+++|+|++
T Consensus 152 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 6667999999999988888888888889999999999999999999999999999988887777 455689999999998
Q ss_pred eEEEEEc-CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 223 YWLCAAT-EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 223 ~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
.+++++. ++.|++||+++++.+..+. .+...+.+++|+|++.+|++++.||.+++|+
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQTLS--------------------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEEEcc--------------------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8887777 9999999998766554332 2233467899999999999999999999996
No 18
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-33 Score=220.62 Aligned_cols=221 Identities=26% Similarity=0.481 Sum_probs=178.2
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
.+.||.++|.+++|+|+|.+|+||+.|.++|+||+..+.- ....+.|..+|.|++|+|++ ..+++|+.||+|++||
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDg--k~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDG--KKIASGSKDGSIRLWD 185 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCc--chhhccccCCeEEEec
Confidence 3569999999999999999999999999999999865432 23345799999999999997 4699999999999999
Q ss_pred CCCcee-EEEEcCCCCCeeEEEECC-----CCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEE
Q 048118 156 LSNCKL-RATLAGHTGYVNTVAVSP-----DGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAA 228 (303)
Q Consensus 156 ~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 228 (303)
.++++. -..+.+|...|++++|.| .+++|++++.||.|+|||+..++++..+. +..+|.++.|-.++.+..++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 988764 467899999999999965 56799999999999999999999888775 46789999998888888888
Q ss_pred cCCcEEEEeCCCCceeeeeeecc--------cc-----------cccc-----------------------------cc-
Q 048118 229 TEQSIKIWDLESKSIVEDLKVDL--------KT-----------EAEK-----------------------------SE- 259 (303)
Q Consensus 229 ~~~~i~iwd~~~~~~~~~~~~~~--------~~-----------~~~~-----------------------------~~- 259 (303)
.|+.|++|+...+++..+++-+. +. .... .+
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 89999999998877766654211 00 0000 00
Q ss_pred ----------CccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 260 ----------ATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 260 ----------~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
...+.....+|...++.+.||||++++|++|-|..|++|+-
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 00011123456667899999999999999999999999974
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.3e-31 Score=209.77 Aligned_cols=264 Identities=18% Similarity=0.321 Sum_probs=196.8
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
++..|+++|++++.+| +.++++|||.|...-+|++..++.. ..+.+|++.|+++.|
T Consensus 59 tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~-----------------------~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFA-----------------------GELTGHKDSVTCCSF 114 (399)
T ss_pred ehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcce-----------------------eEecCCCCceEEEEE
Confidence 6899999999999999 5689999999999999999765411 145789999999999
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC
Q 048118 90 SIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH 168 (303)
Q Consensus 90 ~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 168 (303)
+.+|.+||||+.+|.|+||+..... ...+. ..-..+..++|||.. ..++.|+.||++.+|.+.++...+.+.+|
T Consensus 115 shdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 115 SHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred ccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCC
Confidence 9999999999999999999975432 22222 223458889999964 57899999999999999888888889999
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--------------C---------e-------------
Q 048118 169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--------------A---------V------------- 212 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------------~---------~------------- 212 (303)
+.++++=.|.|+|+.++++..||+|++||+.+++++..+... . .
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 999999999999999999999999999999999887665310 0 0
Q ss_pred ----------------EEEEEEcC---CCeEEEE-EcCCcEEEEeCCCCceeeeeee-------ccccc------ccc--
Q 048118 213 ----------------IHALCFSP---NRYWLCA-ATEQSIKIWDLESKSIVEDLKV-------DLKTE------AEK-- 257 (303)
Q Consensus 213 ----------------v~~~~~s~---~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~-------~~~~~------~~~-- 257 (303)
+.++.+.| .-.+.|+ +-||+|.|||+...++...... .+.+. ...
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~ 349 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGK 349 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCce
Confidence 00011111 1122222 3478899999866544332211 11010 000
Q ss_pred -----ccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 258 -----SEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 258 -----~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
........+..+|...+.+++.+|+.++++|+|.|++.++|++.+
T Consensus 350 v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~~ 399 (399)
T KOG0296|consen 350 VRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVPN 399 (399)
T ss_pred EEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecCC
Confidence 011112345567888889999999999999999999999998753
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-31 Score=218.06 Aligned_cols=269 Identities=20% Similarity=0.342 Sum_probs=218.9
Q ss_pred ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC--------
Q 048118 4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG-------- 75 (303)
Q Consensus 4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 75 (303)
++.....+..|...++-..++|.+ .++|+|-..|+||||+....+... ...++....+|.++.|+.++
T Consensus 48 ~~~~~~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~hiL---Knef~v~aG~I~Di~Wd~ds~RI~avGE 123 (603)
T KOG0318|consen 48 NPASVDIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEHIL---KNEFQVLAGPIKDISWDFDSKRIAAVGE 123 (603)
T ss_pred CccceeeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcceee---eeeeeecccccccceeCCCCcEEEEEec
Confidence 334455678888889999999985 699999999999999987644322 23344445667777777654
Q ss_pred ------------------ceecccCCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCC
Q 048118 76 ------------------QFVGHTKDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136 (303)
Q Consensus 76 ------------------~~~~h~~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 136 (303)
.+.||...|++++|-|... +++||+.|+.|-+|+- .+.+.......|...|+|++|+|+
T Consensus 124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG--PPFKFk~s~r~HskFV~~VRysPD 201 (603)
T KOG0318|consen 124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEG--PPFKFKSSFREHSKFVNCVRYSPD 201 (603)
T ss_pred CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeC--CCeeeeecccccccceeeEEECCC
Confidence 3569999999999998754 7999999999999973 333333344568889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeEEEEc---CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC--
Q 048118 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLA---GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-- 211 (303)
Q Consensus 137 ~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-- 211 (303)
+ ..+++.+.||.+.+||-.+++.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+...+.++..+.
T Consensus 202 G--~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v 279 (603)
T KOG0318|consen 202 G--SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV 279 (603)
T ss_pred C--CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch
Confidence 7 579999999999999999999888887 899999999999999999999999999999999999988886543
Q ss_pred ---eEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEE
Q 048118 212 ---VIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFS 288 (303)
Q Consensus 212 ---~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~ 288 (303)
.+.+ -|. .+.++.++-+|.|.+++....+.+ ..+.+|.-.++++..+|++++|.+
T Consensus 280 ~dqqvG~-lWq-kd~lItVSl~G~in~ln~~d~~~~--------------------~~i~GHnK~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 280 EDQQVGC-LWQ-KDHLITVSLSGTINYLNPSDPSVL--------------------KVISGHNKSITALTVSPDGKTIYS 337 (603)
T ss_pred hceEEEE-EEe-CCeEEEEEcCcEEEEecccCCChh--------------------heecccccceeEEEEcCCCCEEEe
Confidence 3433 344 678889999999999998766533 235667777899999999999999
Q ss_pred eecCCeEEEEeccc
Q 048118 289 GYTDGVIRVWGIGR 302 (303)
Q Consensus 289 gs~Dg~v~~w~~~~ 302 (303)
|+.||.|.-|+++.
T Consensus 338 gsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 338 GSYDGHINSWDSGS 351 (603)
T ss_pred eccCceEEEEecCC
Confidence 99999999999863
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-31 Score=231.94 Aligned_cols=252 Identities=31% Similarity=0.514 Sum_probs=201.8
Q ss_pred ccccccc-ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 8 KGTMRAH-TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 8 ~~~~~~h-~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
...+..| ...|+++.|++++ +.+++++.|+.+++|+...... .. ...+.+|...|..
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~---~~------------------~~~l~~h~~~v~~ 208 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS---NL------------------LRELSGHTRGVSD 208 (456)
T ss_pred eeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc---hh------------------hccccccccceee
Confidence 4445554 6889999999876 5699999999999998843221 00 0123578899999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA 166 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 166 (303)
++|+|+++++++++.|++|++||.... ........+|...|.+++|+|.+ ..+++|+.|++|++||++++++...+.
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeee
Confidence 999999999999999999999998332 22333445899999999999987 589999999999999999999999999
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc--eEEEecC--CC-eEEEEEEcCCCeEEEEE-cCCcEEEEeCCC
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDA--GA-VIHALCFSPNRYWLCAA-TEQSIKIWDLES 240 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~--~~-~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~ 240 (303)
+|.+.|++++|++++++|++++.|+.|++||+.+++ ++..+.. .. +++.++|+|++.++.++ .|+.+++||++.
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS 365 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC
Confidence 999999999999999999999999999999999988 3444432 22 68999999998766554 577999999998
Q ss_pred CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
++.+..+..+... ...+.+...++.+.++.+|+.|+.|.+|+++
T Consensus 366 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 366 GKSVGTYTGHSNL-----------------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CcceeeecccCCc-----------------ceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 8777665533211 0112334457899999999999999999986
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-32 Score=231.87 Aligned_cols=248 Identities=29% Similarity=0.421 Sum_probs=204.6
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
.++||.+.|.++.....+ .+|+|||.|.++++|.++++..+. .+-.+..+|++.|.++++
T Consensus 360 ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~-------------------~~~a~~~gH~~svgava~ 419 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKS-------------------LCVAQANGHTNSVGAVAG 419 (775)
T ss_pred EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchh-------------------hhhhhhcccccccceeee
Confidence 478999999999844343 699999999999999984432111 111346789999999999
Q ss_pred eeCC-CEEEEEeCCCcEEEEecCC--ceeeee-----ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118 90 SIDN-RQIVSASRDRTIKLWNTLG--ECKYTI-----QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161 (303)
Q Consensus 90 ~~~~-~~l~t~~~d~~i~vw~~~~--~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~ 161 (303)
+..+ ..|+++|.|+++++|++.. +....+ .....|...|+|++.+|+. ..+++|+.|.+.++|++.....
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~~l 497 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQLRL 497 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC--ceEEecccccceeeecccCceE
Confidence 7654 5899999999999999854 111111 1234678889999999986 5899999999999999998899
Q ss_pred EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCC
Q 048118 162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YWLCAATEQSIKIWDLE 239 (303)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~ 239 (303)
..++.+|...|+++.|+|..+.++++|.|++|+||.+.+..++.++. +...|..+.|-.++ +++.+++||-|++||++
T Consensus 498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999997 56778888886665 67778899999999999
Q ss_pred CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
+...+..+ ..|+-.+++++-+|...+++||+.||.+.+|.
T Consensus 578 t~eC~~tl--------------------D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 578 TNECEMTL--------------------DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred chhhhhhh--------------------hhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 88765543 34566788999999999999999999999994
No 23
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.3e-32 Score=224.22 Aligned_cols=265 Identities=19% Similarity=0.332 Sum_probs=203.7
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc--------------
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------------- 76 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------- 76 (303)
|.+|...|.++++.|.+. .|+|||-|-+|++||++.+...+.-.+...++..+.|+.+.+++++.
T Consensus 163 l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred ccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 778999999999999875 69999999999999998776554444555667778888888887653
Q ss_pred ----------------------eecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCc--eeeee--ecCCCCccceE
Q 048118 77 ----------------------FVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGE--CKYTI--QEGDAHTEWVS 129 (303)
Q Consensus 77 ----------------------~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~--~~~~~--~~~~~~~~~i~ 129 (303)
-+||...+++-+|+|.. +.|+|++.|+++|+|++... ....+ ....+..-.+.
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 13899999999999975 57999999999999997532 11111 11223344578
Q ss_pred EEEEcCCCCCCEEEEEeCCCcEEEEECCCcee---EEEEcCCCC--CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc-e
Q 048118 130 CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL---RATLAGHTG--YVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-R 203 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~ 203 (303)
.++|+|++ ..+++|+.||+|++|+..+... ...-..|.. .|+++.||++|++|++-+.|+++++||++..+ +
T Consensus 322 sC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 322 SCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred eeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 89999987 4699999999999999754322 122245766 89999999999999999999999999998654 4
Q ss_pred EEEe---cCCCeEEEEEEcCCCeEEEEEc-------CCcEEEEeCCCCceeeeeeeccccccccccCccceeecccccee
Q 048118 204 LYSL---DAGAVIHALCFSPNRYWLCAAT-------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIY 273 (303)
Q Consensus 204 ~~~~---~~~~~v~~~~~s~~~~~l~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (303)
+... .....-..++|||+..++.+++ .|.+.+||..+-+.+..+.+. ...
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--------------------~aS 459 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--------------------TAS 459 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--------------------Cce
Confidence 4332 2234566789999988776653 467999998877766554432 234
Q ss_pred EEEEEEcCCCCEEEEeecCCeEEEE
Q 048118 274 CTSLNWSVDGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 274 ~~~~~~sp~~~~l~~gs~Dg~v~~w 298 (303)
|..+.|+|.-+.|++|+.||++++|
T Consensus 460 vv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 460 VVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEEeecchhhheeeecCCCceEEE
Confidence 5678899999999999999999887
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-30 Score=212.82 Aligned_cols=270 Identities=23% Similarity=0.400 Sum_probs=210.7
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce---------
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF--------- 77 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------- 77 (303)
-+|++-||...|+++.|-|..+=+++|||.|+++.||+=.+. .....+..|+.+|+++.++|++.+
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-----eeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 357889999999999999999989999999999999975432 223456789999999999998752
Q ss_pred ------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee------------------ee----
Q 048118 78 ------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK------------------YT---- 117 (303)
Q Consensus 78 ------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~------------------~~---- 117 (303)
.+|++.|++++|+||+++++|+++|++++|||...... ++
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 28999999999999999999999999999999632100 00
Q ss_pred -------------------eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE-----------E----
Q 048118 118 -------------------IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR-----------A---- 163 (303)
Q Consensus 118 -------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~-----------~---- 163 (303)
.....+|+..|+++..+|++ ..+++|+.||.|.-|+...+..- .
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG--KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC--CEEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence 11123688889999999987 57999999999999986432100 0
Q ss_pred ----------------E------------------------------------------EcCCC--------CCeeEEEE
Q 048118 164 ----------------T------------------------------------------LAGHT--------GYVNTVAV 177 (303)
Q Consensus 164 ----------------~------------------------------------------~~~~~--------~~i~~~~~ 177 (303)
. ++.+. -...++++
T Consensus 372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv 451 (603)
T KOG0318|consen 372 SESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV 451 (603)
T ss_pred cCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE
Confidence 0 00111 01347889
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCc---eEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeecccc
Q 048118 178 SPDGSLCASGGKDGVILLWDLAEGK---RLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLKT 253 (303)
Q Consensus 178 ~~~~~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~ 253 (303)
+|++..+++|+.|+.|++|.+.... ......+...+.+++|||++.+|+++. .+.+.+||+.+++...
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-------- 523 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-------- 523 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec--------
Confidence 9999999999999999999998654 234456788999999999999888775 6889999998876521
Q ss_pred ccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 254 EAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
.....|...+.+++|+|++.+|||||-|-+|.+|++.+
T Consensus 524 -----------~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 524 -----------NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred -----------ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 11233566788999999999999999999999999864
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-30 Score=221.21 Aligned_cols=270 Identities=26% Similarity=0.459 Sum_probs=209.2
Q ss_pred cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeC----------
Q 048118 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS---------- 72 (303)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------- 72 (303)
.++.+.+++.+|-+.|++|.|+.+ .++|++||.|.+.++|.+..... .....+.+|..+|-...+.
T Consensus 133 ~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~---~~~~~l~gHkd~VvacfF~~~~~~l~tvs 208 (893)
T KOG0291|consen 133 NPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKN---LFTYALNGHKDYVVACFFGANSLDLYTVS 208 (893)
T ss_pred CcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccc---cceEeccCCCcceEEEEeccCcceEEEEe
Confidence 467788899999999999999965 68999999999999998864332 1222333444333221111
Q ss_pred CCCc----------------------------------------------------------------------------
Q 048118 73 SDGQ---------------------------------------------------------------------------- 76 (303)
Q Consensus 73 ~~~~---------------------------------------------------------------------------- 76 (303)
.+|.
T Consensus 209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~ 288 (893)
T KOG0291|consen 209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGE 288 (893)
T ss_pred cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCe
Confidence 0000
Q ss_pred e---------ecc-----cCCEEEEEEeeCCCEEEEEeCC-CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE
Q 048118 77 F---------VGH-----TKDVLSVAFSIDNRQIVSASRD-RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT 141 (303)
Q Consensus 77 ~---------~~h-----~~~i~~i~~~~~~~~l~t~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 141 (303)
+ .-| ..+|..++|+..|.++|.|+.- |.+.||+...+. + +..+.+|...+.+++++|++ .+
T Consensus 289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-Y-VlKQQgH~~~i~~l~YSpDg--q~ 364 (893)
T KOG0291|consen 289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-Y-VLKQQGHSDRITSLAYSPDG--QL 364 (893)
T ss_pred eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-e-eeeccccccceeeEEECCCC--cE
Confidence 0 001 1346667777777777766543 677777765442 2 22345788889999999997 58
Q ss_pred EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC--eEEEEEEc
Q 048118 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA--VIHALCFS 219 (303)
Q Consensus 142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~s 219 (303)
+++|+.||.|++||...+-|..++..|+..|+.+.|+..|+.+++++.||+|+.||+......+++..+. ...+++..
T Consensus 365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999988888876554 45678888
Q ss_pred CCCeEEEEEcCC--cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118 220 PNRYWLCAATEQ--SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV 297 (303)
Q Consensus 220 ~~~~~l~~~~~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~ 297 (303)
|.|.++++++.. .|++|++++|+++..+ .+|...+.+++|+|++..|++||.|.+||+
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiL--------------------sGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDIL--------------------SGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehh--------------------cCCCCcceeeEEccccCeEEeccccceEEE
Confidence 889888777643 5999999999987654 456777888999999999999999999999
Q ss_pred Eec
Q 048118 298 WGI 300 (303)
Q Consensus 298 w~~ 300 (303)
||+
T Consensus 505 W~i 507 (893)
T KOG0291|consen 505 WDI 507 (893)
T ss_pred EEe
Confidence 997
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-30 Score=200.08 Aligned_cols=205 Identities=30% Similarity=0.495 Sum_probs=172.3
Q ss_pred CceecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCceee---eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118 75 GQFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECKY---TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150 (303)
Q Consensus 75 ~~~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~ 150 (303)
+.+.+|++.|+.++..+. ...+++++.|+.+.+|++...... ......+|+..|..+..++++ .+++++++|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccce
Confidence 457789999999998876 568999999999999998654222 244456789999999999986 57999999999
Q ss_pred EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--C-CCeEEEEEEcCC--CeEE
Q 048118 151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--A-GAVIHALCFSPN--RYWL 225 (303)
Q Consensus 151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~-~~~v~~~~~s~~--~~~l 225 (303)
+++||+.+++..+.|.+|...|.+++|+|+.+.+++|+.|.++++||.... +.+++. . ...|.++.|+|. ..++
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 999999999999999999999999999999999999999999999998754 444543 2 578999999998 4444
Q ss_pred -EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 226 -CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 226 -~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
.++.|+.+++||+++.++... +.+|..+++.+++||||.+.++|+.||.+.+||++.
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~--------------------~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTT--------------------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE 223 (315)
T ss_pred EEccCCceEEEEccCCcchhhc--------------------cccccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence 456799999999998776432 345677889999999999999999999999999863
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-31 Score=197.16 Aligned_cols=243 Identities=21% Similarity=0.386 Sum_probs=198.6
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
.+.+|.++|.++.++.++ +|.+||++|.++++|+...+ .++. .|.+|-.+|..++.
T Consensus 12 ~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg-----~lik------------------tYsghG~EVlD~~~ 67 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRG-----ALIK------------------TYSGHGHEVLDAAL 67 (307)
T ss_pred eecccccceEEEEEccCC-CEEEEcCCCceEEeeccccc-----ceee------------------eecCCCceeeeccc
Confidence 578899999999999874 79999999999999986432 2222 46788889999999
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC--ceeEEEEcC
Q 048118 90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN--CKLRATLAG 167 (303)
Q Consensus 90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~--~~~~~~~~~ 167 (303)
+.+...|++|+.|+.+.+||.... ........|...|+.++|+.+. ..+++|+.|.++++||.+. .++++.+..
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TG--kv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTG--KVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred cccccccccCCCCceEEEEEcccC--eeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhh
Confidence 999999999999999999998653 2344556889999999999765 5799999999999999876 456777777
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceeee
Q 048118 168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVED 246 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~ 246 (303)
....|.++.++ +..+++|+.||+++.||++.|+.... -.+.+|++++|+++++ .|+++-++.+++.|-+++++++.
T Consensus 144 a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred hcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 78889999886 46789999999999999998875322 2367899999999985 66777899999999999999887
Q ss_pred eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
++-+.+ ..+=...+++.....+++||+||.|.+||+-
T Consensus 221 YkGhkn------------------~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 221 YKGHKN------------------MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred hccccc------------------ceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 664321 1222456677777899999999999999984
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-31 Score=210.21 Aligned_cols=265 Identities=23% Similarity=0.385 Sum_probs=208.6
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee----------
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV---------- 78 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------- 78 (303)
..+..|.+.|+-+.|++++ .+|||++.|.+..+|+...+.. .....++.+|..+|..+.|+|+.++.
T Consensus 218 qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 4688999999999999765 7999999999999999876543 23456678999999999999997653
Q ss_pred ---------------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118 79 ---------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV 143 (303)
Q Consensus 79 ---------------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 143 (303)
+|...+.+++|.|||..+++|+.|+++..||+.++........ ....|.+++..+++. .++
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv--r~~~v~dlait~Dgk--~vl 370 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV--RDPKVHDLAITYDGK--YVL 370 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc--ccceeEEEEEcCCCc--EEE
Confidence 4456899999999999999999999999999987654433221 234588999999873 677
Q ss_pred EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC----CCeEEEEEEc
Q 048118 144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA----GAVIHALCFS 219 (303)
Q Consensus 144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s 219 (303)
..+.|..|++|+..+...+..+. ...+|+++.+|.+++++++.-.+..+.+||++....+..+.. ...|++ ||-
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS-CFg 448 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS-CFG 448 (519)
T ss_pred EEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe-ccC
Confidence 78899999999987655444333 346899999999999999999999999999997665555432 234554 343
Q ss_pred C-CCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEE
Q 048118 220 P-NRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIR 296 (303)
Q Consensus 220 ~-~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~ 296 (303)
- +..++ .++.|++|+||+.++++++..+ .+|...|+.++|+|..+ ++|+||+||+||
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~L--------------------sGHs~~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVL--------------------SGHSKTVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEee--------------------cCCcceeeEEecCCCCHHHhhccCCCCeEE
Confidence 3 22444 4556999999999999887654 45566788999999875 799999999999
Q ss_pred EEeccc
Q 048118 297 VWGIGR 302 (303)
Q Consensus 297 ~w~~~~ 302 (303)
+|.+++
T Consensus 509 IWg~~~ 514 (519)
T KOG0293|consen 509 IWGPSD 514 (519)
T ss_pred EecCCc
Confidence 999874
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-30 Score=210.43 Aligned_cols=244 Identities=22% Similarity=0.377 Sum_probs=203.1
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~ 85 (303)
.++.+|..|+++|+++.|+.. +.+|++++.|+++.+||..+++... ++.-|+.+-.
T Consensus 267 ~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~q-----------------------~f~~~s~~~l 322 (524)
T KOG0273|consen 267 NLISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVKQ-----------------------QFEFHSAPAL 322 (524)
T ss_pred hhhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEEE-----------------------eeeeccCCcc
Confidence 356679999999999999975 5799999999999999986543221 2333555555
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118 86 SVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT 164 (303)
Q Consensus 86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 164 (303)
.+.|-.+. -|++++.|+.|+|+.+... +..++ .+|...|.++.|+|.+ .+|++++.|+++++|......+...
T Consensus 323 DVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~---~GH~g~V~alk~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~ 396 (524)
T KOG0273|consen 323 DVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTF---IGHHGEVNALKWNPTG--SLLASCSDDGTLKIWSMGQSNSVHD 396 (524)
T ss_pred ceEEecCc-eEeecCCCceEEEEEecCCCcceee---ecccCceEEEEECCCC--ceEEEecCCCeeEeeecCCCcchhh
Confidence 67776543 6889999999999987432 22222 3588999999999986 5899999999999999888888888
Q ss_pred EcCCCCCeeEEEECCCC---------CEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEc-CCcE
Q 048118 165 LAGHTGYVNTVAVSPDG---------SLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAAT-EQSI 233 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~~---------~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~~~i 233 (303)
+..|+..|..+.|+|.| ..+++++.|++|++||+..+.++.++ .+..+|++++|+|++.+++.++ |+.|
T Consensus 397 l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 397 LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV 476 (524)
T ss_pred hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence 99999999999999875 46899999999999999999999998 7789999999999998888765 9999
Q ss_pred EEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 234 KIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
.+|+.+++++++.+.- ...+..++|+-+|.+|..+-.||.+++-|+
T Consensus 477 ~iws~~~~~l~~s~~~---------------------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 477 HIWSTKTGKLVKSYQG---------------------TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred EeccccchheeEeecC---------------------CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 9999999998876531 234678999999999999999999999886
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=4.7e-29 Score=232.84 Aligned_cols=278 Identities=21% Similarity=0.309 Sum_probs=198.4
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCc---cccceeeeeecCCCcceEEEEeCCC-----------
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEE---KTYGVARRRLTGHSHFVQDVVLSSD----------- 74 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~----------- 74 (303)
+.+..|...|++++|+|++ +++|||+.|++|++|+..... .....+...+.+ ...+..+.+++.
T Consensus 477 ~~~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~D 554 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFE 554 (793)
T ss_pred ccccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCC
Confidence 4566799999999999875 699999999999999975311 000011111121 223444444331
Q ss_pred C--------------ceecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCC
Q 048118 75 G--------------QFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ 139 (303)
Q Consensus 75 ~--------------~~~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 139 (303)
+ .+.+|.+.|++++|+| ++.+|++|+.|+.|++||+......... . +...+.++.|++.. .
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--~-~~~~v~~v~~~~~~-g 630 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI--K-TKANICCVQFPSES-G 630 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE--e-cCCCeEEEEEeCCC-C
Confidence 1 2458999999999997 7889999999999999998643222111 1 22458899996543 3
Q ss_pred CEEEEEeCCCcEEEEECCCce-eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC------ceEEEec-CCC
Q 048118 140 PTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG------KRLYSLD-AGA 211 (303)
Q Consensus 140 ~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~------~~~~~~~-~~~ 211 (303)
..+++|+.|+.|++||+++.+ ....+.+|...|..+.|. ++.+|++++.|++|++||++.+ ..+..+. +..
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence 579999999999999998765 456778899999999997 6789999999999999999743 3455554 345
Q ss_pred eEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118 212 VIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY 290 (303)
Q Consensus 212 ~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs 290 (303)
.+..++|+|++.++++ +.|+.|++|+......+.......... ........+...+.+++|+|++.+|++|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP-------VSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc-------ccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 6888999998876655 469999999987654332222110000 00011223445688999999999999999
Q ss_pred cCCeEEEEec
Q 048118 291 TDGVIRVWGI 300 (303)
Q Consensus 291 ~Dg~v~~w~~ 300 (303)
.||.|++|++
T Consensus 783 ~dG~I~i~~~ 792 (793)
T PLN00181 783 STGNIKILEM 792 (793)
T ss_pred CCCcEEEEec
Confidence 9999999986
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.1e-30 Score=218.12 Aligned_cols=251 Identities=24% Similarity=0.437 Sum_probs=207.4
Q ss_pred eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV 84 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i 84 (303)
+.+.+.+..|.+.|.+|.++|..+ .++++-..|.+.||+..+..... + +.-..-+|
T Consensus 3 l~~krk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVk---------------s--------feV~~~Pv 58 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVK---------------S--------FEVSEVPV 58 (794)
T ss_pred chhhhHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeee---------------e--------eeecccch
Confidence 345566778999999999999865 78888889999999987543211 1 11234577
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC-ceeEE
Q 048118 85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN-CKLRA 163 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~-~~~~~ 163 (303)
.++.|-+-..++++|+.|..||||+..+.++ +...++|.+.|+|++.||. .+++++++.|-.|++||-++ ..+.+
T Consensus 59 Ra~kfiaRknWiv~GsDD~~IrVfnynt~ek--V~~FeAH~DyIR~iavHPt--~P~vLtsSDDm~iKlW~we~~wa~~q 134 (794)
T KOG0276|consen 59 RAAKFIARKNWIVTGSDDMQIRVFNYNTGEK--VKTFEAHSDYIRSIAVHPT--LPYVLTSSDDMTIKLWDWENEWACEQ 134 (794)
T ss_pred hhheeeeccceEEEecCCceEEEEeccccee--eEEeeccccceeeeeecCC--CCeEEecCCccEEEEeeccCceeeee
Confidence 8888988889999999999999999866443 4556789999999999997 47999999999999999865 47889
Q ss_pred EEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCC---eEEEEEcCCcEEEEeC
Q 048118 164 TLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNR---YWLCAATEQSIKIWDL 238 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~---~~l~~~~~~~i~iwd~ 238 (303)
++.+|.-.|.+++|+| |.+.|++++.|++|+||.+.+..+.+++.. ...|+++.|-+.+ .++.++.|..|++||.
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence 9999999999999999 667999999999999999998888888864 5679999998876 5666677889999999
Q ss_pred CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118 239 ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~ 303 (303)
++...+..+ .+|..-+..+.|+|.-+.+++||+||+||+|.-..|
T Consensus 215 Qtk~CV~TL--------------------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 215 QTKSCVQTL--------------------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred chHHHHHHh--------------------hcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 887665543 445555677899999999999999999999987665
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=221.63 Aligned_cols=248 Identities=28% Similarity=0.486 Sum_probs=196.5
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
+...+.+|...|..++|+|++ .++++++.|++|++||+..... ... .+.+|...|++
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~----~~~------------------~l~gH~~~v~~ 251 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR----NLK------------------TLKGHSTYVTS 251 (456)
T ss_pred hhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe----EEE------------------EecCCCCceEE
Confidence 455678999999999999986 5999999999999999943211 111 35689999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--eEEE
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--LRAT 164 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--~~~~ 164 (303)
++|+|+++++++|+.|++|++||+.... .......|...|.+++|++++ ..+++++.|+.|++||+.++. +...
T Consensus 252 ~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~ 327 (456)
T KOG0266|consen 252 VAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKL 327 (456)
T ss_pred EEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeeccCCceEEEEECCCC--CEEEEcCCCccEEEEECCCCceeeeec
Confidence 9999999999999999999999987522 223335788899999999986 578999999999999999988 5567
Q ss_pred EcCCCCC--eeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--CC--eEEEEEEcCCCeEEE-EEcCCcEEEEe
Q 048118 165 LAGHTGY--VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GA--VIHALCFSPNRYWLC-AATEQSIKIWD 237 (303)
Q Consensus 165 ~~~~~~~--i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~--~v~~~~~s~~~~~l~-~~~~~~i~iwd 237 (303)
+.++... ++.+.|+|++.++++++.|+.+++||+..+..+..+.. .. .+.+...++.+.++. ++.|+.|++||
T Consensus 328 ~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 328 LSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred ccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence 7766555 99999999999999999999999999998877666532 11 333445566776654 55699999999
Q ss_pred CCCCceeeeeeeccccccccccCccceeecccc-ceeEEEEEEcCCCCEEEEee--cCCeEEEEecc
Q 048118 238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKK-NIYCTSLNWSVDGSTLFSGY--TDGVIRVWGIG 301 (303)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~l~~gs--~Dg~v~~w~~~ 301 (303)
+.++..+..+. ++ ...+..++++|...++++++ .|+.+++|...
T Consensus 408 ~~s~~~~~~l~--------------------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 408 SSSGGILQRLE--------------------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCccchhhhhc--------------------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 98765544332 22 33446788999999999998 79999999753
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3.3e-29 Score=193.86 Aligned_cols=260 Identities=22% Similarity=0.336 Sum_probs=200.1
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------------
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ------------- 76 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------- 76 (303)
.+.+|++.|+.+.|+|++ .+|||||.|..|-+|+....++. ...+.+|+++|-.+.+.+++.
T Consensus 42 ~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN----~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCEN----FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccc----eeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 477899999999999965 68999999999999997655433 234457888887777766542
Q ss_pred -----------eecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEE
Q 048118 77 -----------FVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS 144 (303)
Q Consensus 77 -----------~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 144 (303)
+++|..-|+.++-+.-| .++.+++.|++++|||.+...- ++. ......++++.|...+. .+.+
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~--~~t-~~~kyqltAv~f~d~s~--qv~s 191 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA--IKT-FENKYQLTAVGFKDTSD--QVIS 191 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch--hhc-cccceeEEEEEeccccc--ceee
Confidence 34677777777744333 4677788888888888754321 111 12345688999988763 5889
Q ss_pred EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC---ce-EEEecC-----CCeEEE
Q 048118 145 ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG---KR-LYSLDA-----GAVIHA 215 (303)
Q Consensus 145 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---~~-~~~~~~-----~~~v~~ 215 (303)
|+-|+.|++||++.+.....+.+|.++|+.+..+|+|.++++-+-|.++++||++.. ++ +..+.. +...-.
T Consensus 192 ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 999999999999999999999999999999999999999999999999999999753 32 444332 123445
Q ss_pred EEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe
Q 048118 216 LCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV 294 (303)
Q Consensus 216 ~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~ 294 (303)
++|+|++..+. .+.|..+++||..+..++.. +.+|..-++.++|+|..+.|.+++.|.+
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk--------------------lpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSRRILYK--------------------LPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred eeccCCCCccccccccceEEEeecccccEEEE--------------------cCCcceeEEEeeecCCCcEEEEeccCce
Confidence 78999987664 56799999999987766543 3456667889999999999999999999
Q ss_pred EEEEe
Q 048118 295 IRVWG 299 (303)
Q Consensus 295 v~~w~ 299 (303)
|.+=.
T Consensus 332 i~lge 336 (338)
T KOG0265|consen 332 IYLGE 336 (338)
T ss_pred eEeec
Confidence 98743
No 34
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=4.1e-29 Score=190.50 Aligned_cols=261 Identities=21% Similarity=0.352 Sum_probs=198.6
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
|.||..+++.|.++.++ ++|.||+.|.+..+|-...++.. |.|.||++.|++++.+
T Consensus 6 l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerl-----------------------Gty~GHtGavW~~Did 61 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERL-----------------------GTYDGHTGAVWCCDID 61 (327)
T ss_pred cccCccccceEEecCCC-cEEEEecCCCCceEEEecCCcee-----------------------eeecCCCceEEEEEec
Confidence 45699999999999765 79999999999999976444321 4688999999999999
Q ss_pred eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE-----eCCCcEEEEECC-------C
Q 048118 91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA-----SWDRTVKVWNLS-------N 158 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~dg~i~iwd~~-------~ 158 (303)
-+.++++||++|.++++||.......... .-..+|..+.|++++ .+++.. +..+.|.++|++ .
T Consensus 62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~---k~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s 136 (327)
T KOG0643|consen 62 WDSKHLITGSADQTAKLWDVETGKQLATW---KTNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDS 136 (327)
T ss_pred CCcceeeeccccceeEEEEcCCCcEEEEe---ecCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence 99999999999999999998643222221 234568889999986 333333 334679999987 3
Q ss_pred ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCCCe-EEEEEcCCcEEE
Q 048118 159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRY-WLCAATEQSIKI 235 (303)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~~~i~i 235 (303)
.++...+..+...++.+-|.|-++.|++|.+||.|.+||+++++.+..- .+...|+.++++++.. ++.++.|..-++
T Consensus 137 ~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 137 EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL 216 (327)
T ss_pred cCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence 4556777778889999999999999999999999999999998665443 3456899999999985 456667999999
Q ss_pred EeCCCCceeeeeeeccc----------------cccccccCccce-------------------eeccccceeEEEEEEc
Q 048118 236 WDLESKSIVEDLKVDLK----------------TEAEKSEATTAT-------------------TTIKKKNIYCTSLNWS 280 (303)
Q Consensus 236 wd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~s 280 (303)
||.++-++++.+....- ...+..+.++.. ...++|...+++++|+
T Consensus 217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 217 VDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred eeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 99998877776643210 011111111110 1234566778999999
Q ss_pred CCCCEEEEeecCCeEEEEec
Q 048118 281 VDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 281 p~~~~l~~gs~Dg~v~~w~~ 300 (303)
|+|+..++|+.||.||+.-.
T Consensus 297 PdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 297 PDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred CCCcccccCCCCceEEEEEe
Confidence 99999999999999998643
No 35
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=8.2e-31 Score=198.10 Aligned_cols=245 Identities=20% Similarity=0.305 Sum_probs=201.6
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
-++++++|+++|+....+.+ .-+-|+++.|-+-++||.-.+... . -..|+.-|..
T Consensus 51 wigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdel-----h-------------------sf~hkhivk~ 105 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDEL-----H-------------------SFEHKHIVKA 105 (334)
T ss_pred cEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhh-----h-------------------hhhhhheeee
Confidence 36789999999999888854 456899999999999997543221 1 1247888999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA 166 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 166 (303)
++|+.+..+|+||+.++.+||||++... -.......|+..|..+-|.... ..+++.+.|+.||+||.++++.++++.
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEe
Confidence 9999999999999999999999986432 2333446788889998887754 468888999999999999999888876
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCceee
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIVE 245 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~ 245 (303)
- +.+|+++.++++|++|.++ ..+.|+.||..+...++.......|.+.+++|+. .+++++.|..++.||..+++.+.
T Consensus 183 ~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 183 F-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred c-CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence 4 5689999999999887554 5678999999999999998888899999999986 55666789999999999987665
Q ss_pred eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
.+ .++|...+.++.|+|+|...++||+||+||+|..
T Consensus 261 ~~-------------------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 261 SY-------------------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred ec-------------------ccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 32 2455667788999999999999999999999975
No 36
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.7e-28 Score=212.81 Aligned_cols=256 Identities=21% Similarity=0.287 Sum_probs=181.8
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee-CCC
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI-DNR 94 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~-~~~ 94 (303)
..|......+++ ..+++++.+.....|+...... +. .+.. .+.+. .....+.+|.+.|.+++|+| ++.
T Consensus 21 ~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~---v~--~~~~-~G~~~----~~~~~l~GH~~~V~~v~fsP~d~~ 89 (493)
T PTZ00421 21 LNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTA---VL--KHTD-YGKLA----SNPPILLGQEGPIIDVAFNPFDPQ 89 (493)
T ss_pred eccccccccCCC-CCcEeECCceEEEEEecCCceE---Ee--eccc-cccCC----CCCceEeCCCCCEEEEEEcCCCCC
Confidence 344444444443 3478888888888997643210 00 0000 00000 00113678999999999999 788
Q ss_pred EEEEEeCCCcEEEEecCCcee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC
Q 048118 95 QIVSASRDRTIKLWNTLGECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT 169 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 169 (303)
+|++++.|+.|++||+..... ..+.....|...|.+++|+|.. ...+++++.|+.|++||+.+++....+.+|.
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 999999999999999854211 1122335688899999999975 3579999999999999999998888899999
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--CeEEEEEEcCCCe-EEEEE----cCCcEEEEeCCCCc
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALCFSPNRY-WLCAA----TEQSIKIWDLESKS 242 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~-~l~~~----~~~~i~iwd~~~~~ 242 (303)
..|.+++|+|++.+|++++.|++|++||+++++.+..+... .....+.|.+++. +++++ .|+.|++||+++..
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999999999999999999999999999999888776432 2344567888754 44443 36899999997643
Q ss_pred e-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEeccc
Q 048118 243 I-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGIGR 302 (303)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~~~ 302 (303)
. +..... .....+....|+|++.+|++|+ .||.|++||+..
T Consensus 249 ~p~~~~~~-------------------d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 249 SPYSTVDL-------------------DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CceeEecc-------------------CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 2 111000 0011223456899999998887 599999999853
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8e-30 Score=193.06 Aligned_cols=241 Identities=25% Similarity=0.428 Sum_probs=189.4
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC-CC
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID-NR 94 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~-~~ 94 (303)
+..+.|+|++..++.+++++.||++++||....++ |-..++.|+.+|.++.|++. +.
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----------------------Pi~~~kEH~~EV~Svdwn~~~r~ 118 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----------------------PIHKFKEHKREVYSVDWNTVRRR 118 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCc----------------------chhHHHhhhhheEEeccccccce
Confidence 67889999999999999999999999999653221 11256789999999999985 56
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118 95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 174 (303)
.+++++.|++|++|+..... .+....+|+.-|...+|+|.. .+.+++++.|+.+++||++..-....+..|...|.+
T Consensus 119 ~~ltsSWD~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~ 195 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC 195 (311)
T ss_pred eEEeeccCCceEeecCCCCc--ceEeecCCccEEEEEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence 78899999999999964322 233356788899999999975 578999999999999999764334448889999999
Q ss_pred EEECC-CCCEEEEEeCCCeEEEEeCCCC-ceEEEec-CCCeEEEEEEcCCC-eEEEE-EcCCcEEEEeCCCCceeeeeee
Q 048118 175 VAVSP-DGSLCASGGKDGVILLWDLAEG-KRLYSLD-AGAVIHALCFSPNR-YWLCA-ATEQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 175 ~~~~~-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~~-~~l~~-~~~~~i~iwd~~~~~~~~~~~~ 249 (303)
+.|+. +.+.+++|+.|+.|++||++.- .++..+. ++..|+.+.|||.. .+|++ +-|-++++||...+.-..+
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e--- 272 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE--- 272 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh---
Confidence 99987 6678999999999999999864 4555553 35689999999984 45554 4589999999874432110
Q ss_pred ccccccccccCccceeeccccceeEEEEEEcCC-CCEEEEeecCCeEEEEec
Q 048118 250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-GSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~gs~Dg~v~~w~~ 300 (303)
+...|..++-.++||+. ..++|+++-|+.+.+|+.
T Consensus 273 ----------------~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 ----------------TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ----------------hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 12235667788999985 569999999999999984
No 38
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=189.18 Aligned_cols=225 Identities=25% Similarity=0.419 Sum_probs=181.8
Q ss_pred eeeecCCCcceEEEEeCCCCcee-------------cc-----------cCCEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 048118 56 RRRLTGHSHFVQDVVLSSDGQFV-------------GH-----------TKDVLSVAFSIDNRQIVSASRDRTIKLWNTL 111 (303)
Q Consensus 56 ~~~~~~~~~~i~~~~~~~~~~~~-------------~h-----------~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~ 111 (303)
++.+.+|.+.|++..|+++.+.. .+ ..=|-.++|+|.|.++|.|+.|+.+.||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 46677888888888877765421 11 1125678888888888888888888888875
Q ss_pred Ccee----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC-CCCEEEE
Q 048118 112 GECK----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCAS 186 (303)
Q Consensus 112 ~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 186 (303)
.... ........|+..+.|+.|-++. .+++++.|.+.-+||+++++....|.+|.+.|.+++++| +++.|++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~---~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN---HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCC---ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 3211 1223345789999999998853 699999999999999999999999999999999999999 9999999
Q ss_pred EeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccce
Q 048118 187 GGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTAT 264 (303)
Q Consensus 187 ~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (303)
|+-|+..++||++.+..+++|.. .+-|++++|.|+|.-+++ +.|+.+++||+|..+.+..+..
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~--------------- 269 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH--------------- 269 (343)
T ss_pred cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---------------
Confidence 99999999999999999999864 678999999999976655 5588999999998776654431
Q ss_pred eeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 265 TTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 265 ~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
......+++++||-.|++|+.|..|.++.+||.-
T Consensus 270 ---~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 270 ---DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred ---CcccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence 1123346889999999999999999999999963
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=205.62 Aligned_cols=244 Identities=25% Similarity=0.416 Sum_probs=196.6
Q ss_pred cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
..++|.+++|+|..+.-+|+.+. -.+.||+....+.. ..+......+.+++|-.||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-----------------------k~~srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-----------------------KTFSRFKDVVYSVDFRSDG 80 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-----------------------hhHHhhccceeEEEeecCC
Confidence 33689999999977754555444 36888876543211 0122245678999999999
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCee
Q 048118 94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN 173 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 173 (303)
++++.|+..|.|+++|... +........|+.++..+.|+|.+ ...+++|+.|+.+++||+.+......+.+|++.|.
T Consensus 81 ~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~~d-~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSPQD-NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred eEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecccC-CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 9999999999999999543 22233446789999999999986 35788999999999999998887668999999999
Q ss_pred EEEECCCC-CEEEEEeCCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118 174 TVAVSPDG-SLCASGGKDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDL 251 (303)
Q Consensus 174 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~ 251 (303)
+.+|+|.. ..+++||.||+|++||.+.. ..+.+++++.+|.++.+-|.|..++++..+.+++||+-+|...-.
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~----- 232 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT----- 232 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh-----
Confidence 99999955 47899999999999999977 788899999999999999999999999999999999985543211
Q ss_pred ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118 252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~ 303 (303)
....|.-.++++++..++..|++|+-||.|++||+++|
T Consensus 233 --------------~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 233 --------------SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred --------------hhhcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 12235556788999999999999999999999999887
No 40
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.2e-29 Score=194.97 Aligned_cols=277 Identities=19% Similarity=0.303 Sum_probs=204.4
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCc---cccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEE---KTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+..|+.++-+.+|+|++ .++||||.|..|+|.|.+.+- +.........+.+...|+ .+-.|.++|+++
T Consensus 108 lt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--------TlYDH~devn~l 178 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--------TLYDHVDEVNDL 178 (430)
T ss_pred EeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--------ehhhccCcccce
Confidence 56788899999999986 699999999999999986321 100111111111212222 345799999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCceeee-eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYT-IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL- 165 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~- 165 (303)
.|+|....|++++.|++|++||+.....+. ++. -....++.++.|+|.+ .+++.|..--.+++||+++.++...-
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~-~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV-FQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHH-hhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecC
Confidence 999999999999999999999985432211 111 1234679999999987 46888888899999999988765432
Q ss_pred --cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec---CCCeEEEEEEcCCCeEE-EEEcCCcEEEEeCC
Q 048118 166 --AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD---AGAVIHALCFSPNRYWL-CAATEQSIKIWDLE 239 (303)
Q Consensus 166 --~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~ 239 (303)
..|.+.|+++.+++.+++.++++.||.|++||--+++++.++. .++.|.+..|..++.++ .++.|..+++|.+.
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 3588999999999999999999999999999999888887773 46789999999998654 56679999999999
Q ss_pred CCceeeeeeecccccc-----------------------------ccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118 240 SKSIVEDLKVDLKTEA-----------------------------EKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY 290 (303)
Q Consensus 240 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs 290 (303)
+++.+..+.-.-.... .............+|+..+..+.-||.++-+++||
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcs 415 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCS 415 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeec
Confidence 9988776542100000 00000111112235666677788899999999999
Q ss_pred cCCeEEEEe
Q 048118 291 TDGVIRVWG 299 (303)
Q Consensus 291 ~Dg~v~~w~ 299 (303)
.|-+.|+|-
T Consensus 416 dD~raRFWy 424 (430)
T KOG0640|consen 416 DDFRARFWY 424 (430)
T ss_pred ccceeeeee
Confidence 999999994
No 41
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.2e-30 Score=203.47 Aligned_cols=242 Identities=18% Similarity=0.337 Sum_probs=193.0
Q ss_pred cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
++.|.||.+-|.+++=+|.....++||+.||.|++||++..+.. ..+.+|.+.|..|
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-----------------------~~f~AH~G~V~Gi 115 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-----------------------RTFKAHEGLVRGI 115 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-----------------------heeecccCceeeE
Confidence 45689999999999999987788999999999999999764421 1356788899999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG 167 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 167 (303)
++.. ..+++++.|++|+.|...+.....+. ....+..+..+.. ...++++|. .|.|||..-..++..+..
T Consensus 116 ~v~~--~~~~tvgdDKtvK~wk~~~~p~~til----g~s~~~gIdh~~~--~~~FaTcGe--~i~IWD~~R~~Pv~smsw 185 (433)
T KOG0268|consen 116 CVTQ--TSFFTVGDDKTVKQWKIDGPPLHTIL----GKSVYLGIDHHRK--NSVFATCGE--QIDIWDEQRDNPVSSMSW 185 (433)
T ss_pred Eecc--cceEEecCCcceeeeeccCCcceeee----ccccccccccccc--cccccccCc--eeeecccccCCccceeec
Confidence 8887 67899999999999987664332221 1233444544432 245777765 499999988888888888
Q ss_pred CCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceee
Q 048118 168 HTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVE 245 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~ 245 (303)
..+.|.++.|+|... .|++++.|+.|.++|++.+.++..+......+.++|+|+.. +.++..|..++.||++.-+.
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-- 263 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-- 263 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcc--
Confidence 888999999999654 67888899999999999999999888888889999999765 44556789999999875321
Q ss_pred eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+....++|...+++++|||.|.-+++||.|.+||+|.+.
T Consensus 264 -----------------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 264 -----------------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred -----------------cchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 122346677888999999999999999999999999875
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.8e-29 Score=212.11 Aligned_cols=254 Identities=24% Similarity=0.401 Sum_probs=208.1
Q ss_pred cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK 82 (303)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~ 82 (303)
+.|.+...+-|-.+.|..+.|-.+..+++|.+++.+.+|+++...+.-. -+.||+.
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------------------------ii~GH~e 366 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------------------------IIPGHTE 366 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE------------------------EEeCchh
Confidence 5678888899999999999876666789999999999999977543211 2468999
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 160 (303)
.|.+++...+|-+|+||+.|+++++|.+...+. ........|+..|.+++++..+ ...|++++.|.++++|++...+
T Consensus 367 ~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~-asffvsvS~D~tlK~W~l~~s~ 445 (775)
T KOG0319|consen 367 AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG-ASFFVSVSQDCTLKLWDLPKSK 445 (775)
T ss_pred heeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC-ccEEEEecCCceEEEecCCCcc
Confidence 999999777788999999999999998743332 2234556799999999997655 4689999999999999986511
Q ss_pred ---------eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEE-Ec
Q 048118 161 ---------LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCA-AT 229 (303)
Q Consensus 161 ---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~ 229 (303)
+..+...|...|++++++|+..++||||.|++.++|+++..+.+.++.. .-.+.++.|+|..+++++ +.
T Consensus 446 ~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg 525 (775)
T KOG0319|consen 446 ETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG 525 (775)
T ss_pred cccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccC
Confidence 1223457889999999999999999999999999999998777777753 457999999998876655 56
Q ss_pred CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
|..|+||.+.+.+.++. +.+|...+....|-.+++.|++++.||.+++|++.
T Consensus 526 D~TvKIW~is~fSClkT--------------------~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 526 DKTVKIWSISTFSCLKT--------------------FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred CceEEEEEeccceeeee--------------------ecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99999999998877654 45566677888999999999999999999999984
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=203.29 Aligned_cols=243 Identities=26% Similarity=0.454 Sum_probs=187.6
Q ss_pred ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118 17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI 96 (303)
Q Consensus 17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l 96 (303)
-+.|..|+|++ .++++||.||-|.+|+...+... .++.+..+..+.-+..+|.|++|+.+.+.+
T Consensus 215 h~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlr---------------KDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 215 HVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLR---------------KDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred chhheeeCCCC-ceEeeccccceeeeehhccchhh---------------hhhhhhhhcceeecccceEEEeecccHHHh
Confidence 36788899975 79999999999999998654211 112233445667789999999999999999
Q ss_pred EEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEE
Q 048118 97 VSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 175 (303)
Q Consensus 97 ~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 175 (303)
|+|+.||.|++|.+.. .+...+ ..+|+..|.|+.|+.++. .+++++.|.++++.-++.+++..++++|...|+..
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccCcc--hhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 9999999999999753 333222 247888999999999874 58899999999999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---CCeEEE-------------------------------------
Q 048118 176 AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---GAVIHA------------------------------------- 215 (303)
Q Consensus 176 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~------------------------------------- 215 (303)
.|.++|.++++++.||+|++|+.++.+++.++.. ..+|++
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk 434 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK 434 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCC
Confidence 9999999999999999999999988766555421 112222
Q ss_pred --------EEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118 216 --------LCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL 286 (303)
Q Consensus 216 --------~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l 286 (303)
++.||.|.|+ +.+.|+.+++|...+|++...+.++ .-.+..++-+|..+.|
T Consensus 435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh--------------------EkdvIGl~HHPHqNll 494 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH--------------------EKDVIGLTHHPHQNLL 494 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc--------------------cccccccccCcccchh
Confidence 3445666554 3455666777776666665554432 2223456678999999
Q ss_pred EEeecCCeEEEEe
Q 048118 287 FSGYTDGVIRVWG 299 (303)
Q Consensus 287 ~~gs~Dg~v~~w~ 299 (303)
|+-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999995
No 44
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.1e-28 Score=200.49 Aligned_cols=269 Identities=20% Similarity=0.349 Sum_probs=205.5
Q ss_pred cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118 12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI 91 (303)
Q Consensus 12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~ 91 (303)
--|.+.|+.+..-|.++.++||.+..+.+.|||..+........ . ...|+-++.+|+++-++++|++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------------~-~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------------G-ECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------------c-cCCCceEEEeeccccccccccc
Confidence 34889999999999999999999999999999997643221100 0 2335557889999889999998
Q ss_pred CC-CEEEEEeCCCcEEEEecCCcee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC--CceeEE
Q 048118 92 DN-RQIVSASRDRTIKLWNTLGECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS--NCKLRA 163 (303)
Q Consensus 92 ~~-~~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~--~~~~~~ 163 (303)
.. .++++++.|+.|++||+..... ........|...|..++|+|-. ...|++++.|+.+.|||.+ +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCCCCCCcc
Confidence 64 5899999999999999854322 2233456789999999999965 3578999999999999999 566777
Q ss_pred EEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCC-ceEEEec-CCCeEEEEEEcCCC-eEEEE-EcCCcEEEEeC
Q 048118 164 TLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEG-KRLYSLD-AGAVIHALCFSPNR-YWLCA-ATEQSIKIWDL 238 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~~-~~l~~-~~~~~i~iwd~ 238 (303)
...+|.+++++++|+| ++..||+||.|++|.+||+|.- ++++++. +...|.++.|||+. .+||+ ++|+.+.+||+
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 7889999999999999 5567899999999999999864 3566664 46789999999985 45554 56999999998
Q ss_pred CCCceeeeeeecccccccccc-CccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEecc
Q 048118 239 ESKSIVEDLKVDLKTEAEKSE-ATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~ 301 (303)
..-..... ...... ..-..+.-.+|...+..++|+|..+ .|++.+.|+.+.||..+
T Consensus 347 s~ig~eq~-------~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 347 SRIGEEQS-------PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccC-------hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 54221110 000001 1112244567788899999999988 57899999999999865
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.5e-28 Score=194.48 Aligned_cols=251 Identities=29% Similarity=0.453 Sum_probs=194.2
Q ss_pred cccccccccceeeeecCCCC--CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118 8 KGTMRAHTDMVTAIATPIDN--SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~--~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~ 85 (303)
...+.||.++|..+++...+ ...|+++|.|.++++|.++..+..... .....||+..|-
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~-------------------~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA-------------------LKVCRGHKRSVD 197 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH-------------------HhHhccccccee
Confidence 44688999999977765433 246999999999999998765432110 112348999999
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEecCCce-----------------------eeeeecCCCCccceEEEEEcCCCCCCEE
Q 048118 86 SVAFSIDNRQIVSASRDRTIKLWNTLGEC-----------------------KYTIQEGDAHTEWVSCVRFSPNTLQPTI 142 (303)
Q Consensus 86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 142 (303)
+++..++|.++++|+.|.+|++|+...+. +..+....+|..+|.++.|.+. ..+
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~ 274 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVI 274 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---Cce
Confidence 99999999999999999999999831110 0112233578999999999884 368
Q ss_pred EEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---EEEe-cCCCeEEEEEE
Q 048118 143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---LYSL-DAGAVIHALCF 218 (303)
Q Consensus 143 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~-~~~~~v~~~~~ 218 (303)
.++++|-+|+.||+.++....++.+ +..++++..+|..++|++|+.|..+++||.+++.. .+++ .+...|.++.|
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred EeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence 9999999999999999988877775 45789999999999999999999999999987642 2233 34678999999
Q ss_pred cCCC--eEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118 219 SPNR--YWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR 296 (303)
Q Consensus 219 s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~ 296 (303)
+|.. +++.++.|+.+++||+|+.+- +.+.+.+|.-.+.++.|+ ++.++++|+.|.+++
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k~-------------------plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTKA-------------------PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCCC-------------------cceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 9975 344556799999999987641 223455566667889997 567999999999999
Q ss_pred EEecc
Q 048118 297 VWGIG 301 (303)
Q Consensus 297 ~w~~~ 301 (303)
++.-.
T Consensus 414 i~~~~ 418 (423)
T KOG0313|consen 414 IFKGS 418 (423)
T ss_pred Eeccc
Confidence 98643
No 46
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.2e-29 Score=186.62 Aligned_cols=252 Identities=20% Similarity=0.312 Sum_probs=189.7
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
...|.+.|..+..+.-+ .+||||+.|++|||+...+..+.. .. -.+.||+++|+.++|.
T Consensus 7 dt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~--ll------------------~~L~Gh~GPVwqv~wa 65 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSK--LL------------------AELTGHSGPVWKVAWA 65 (299)
T ss_pred hhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCce--ee------------------eEecCCCCCeeEEeec
Confidence 56799999988877655 579999999999999886543211 11 1467899999999998
Q ss_pred e--CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc---eeEEEE
Q 048118 91 I--DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC---KLRATL 165 (303)
Q Consensus 91 ~--~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~---~~~~~~ 165 (303)
. .|.+||+|+.|+.|.||...+...........|...|++++|.|......|++++.||.|.+.+.+.. ......
T Consensus 66 hPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 66 HPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred ccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence 6 69999999999999999876543323333456888899999999877778999999999999887653 122335
Q ss_pred cCCCCCeeEEEECCC---C-----------CEEEEEeCCCeEEEEeCCCCceE--EEe-cCCCeEEEEEEcCCC-----e
Q 048118 166 AGHTGYVNTVAVSPD---G-----------SLCASGGKDGVILLWDLAEGKRL--YSL-DAGAVIHALCFSPNR-----Y 223 (303)
Q Consensus 166 ~~~~~~i~~~~~~~~---~-----------~~l~~~~~d~~v~iwd~~~~~~~--~~~-~~~~~v~~~~~s~~~-----~ 223 (303)
..|.-.|++++|.|. | +.|++|+.|..|+||+...++-+ .++ .+...|+.++|.|.- .
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~ 225 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST 225 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence 678889999999886 4 56999999999999999876422 122 245789999999962 3
Q ss_pred EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 224 WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 224 ~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
+..++.||++.||..+.. ....+. ..++.....+++++||+.|..|++++.|+.|.+|.-
T Consensus 226 iAS~SqDg~viIwt~~~e--~e~wk~---------------tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 226 IASCSQDGTVIIWTKDEE--YEPWKK---------------TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred eEEecCCCcEEEEEecCc--cCcccc---------------cccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 445567999999986521 111110 011222345688999999999999999999999964
No 47
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.9e-28 Score=187.23 Aligned_cols=268 Identities=19% Similarity=0.357 Sum_probs=185.5
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
-.+|.+.|+++.|++.+ +.+||||.|++++|||..+...+. .-+..++.|.+.|..+.|.
T Consensus 9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W-------------------~~Ts~Wrah~~Si~rV~WA 68 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTW-------------------SCTSSWRAHDGSIWRVVWA 68 (361)
T ss_pred ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCce-------------------EEeeeEEecCCcEEEEEec
Confidence 35789999999999875 679999999999999975443221 1123577899999999997
Q ss_pred e--CCCEEEEEeCCCcEEEEecCCc-------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC---
Q 048118 91 I--DNRQIVSASRDRTIKLWNTLGE-------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN--- 158 (303)
Q Consensus 91 ~--~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~--- 158 (303)
+ -|+.+|+|+.|++++||+.... ..............|..++|.|......+++++.||++|||+.-+
T Consensus 69 hPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 69 HPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred CccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence 5 4899999999999999975211 111111112234568999999987667899999999999997532
Q ss_pred ---ceeEEEEc-------CCCCCeeEEEECCC---CCEEEEEeCC-----CeEEEEeCCCCc-eEE---Ee-cCCCeEEE
Q 048118 159 ---CKLRATLA-------GHTGYVNTVAVSPD---GSLCASGGKD-----GVILLWDLAEGK-RLY---SL-DAGAVIHA 215 (303)
Q Consensus 159 ---~~~~~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~d-----~~v~iwd~~~~~-~~~---~~-~~~~~v~~ 215 (303)
..+..+++ .+..+..|+.|+|. .++|++|+.+ +.++||...... ... ++ ....+|++
T Consensus 149 Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~d 228 (361)
T KOG2445|consen 149 LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRD 228 (361)
T ss_pred cccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCccee
Confidence 23333333 35668889999984 3578888765 488999875443 222 22 45689999
Q ss_pred EEEcCC-C---eEEEEE-cCCcEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118 216 LCFSPN-R---YWLCAA-TEQSIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG 289 (303)
Q Consensus 216 ~~~s~~-~---~~l~~~-~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g 289 (303)
++|.|. | .++|++ .|| |+||+++... .+.+-.+ ..+.............+.+|+..++.+.|+..|..|++.
T Consensus 229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~-~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEV-LAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST 306 (361)
T ss_pred eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcc-cCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence 999997 2 455554 467 9999986421 1100000 000000001111233467788889999999999999999
Q ss_pred ecCCeEEEEec
Q 048118 290 YTDGVIRVWGI 300 (303)
Q Consensus 290 s~Dg~v~~w~~ 300 (303)
+.||+||+|.-
T Consensus 307 GdDG~VRLWka 317 (361)
T KOG2445|consen 307 GDDGCVRLWKA 317 (361)
T ss_pred CCCceeeehhh
Confidence 99999999963
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.2e-28 Score=194.72 Aligned_cols=240 Identities=28% Similarity=0.472 Sum_probs=187.8
Q ss_pred cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
|.+=|.+|... ++.++||+.||++++|+...... .++.||+++|.+++|.-..
T Consensus 104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~~------------------------~~~~Ght~~ik~v~~v~~n 156 (423)
T KOG0313|consen 104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKSI------------------------KTIVGHTGPIKSVAWVIKN 156 (423)
T ss_pred chhhhhhhccc---CceEEEeecCCeeEEEecCCceE------------------------EEEecCCcceeeeEEEecC
Confidence 45556666554 46899999999999999863221 1356889999888876543
Q ss_pred C---EEEEEeCCCcEEEEecCCceee--eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC----------
Q 048118 94 R---QIVSASRDRTIKLWNTLGECKY--TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN---------- 158 (303)
Q Consensus 94 ~---~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~---------- 158 (303)
. .|++++.|.++++|........ ..+...+|...|.+++..+++ ..+++|++|.+|.+|+...
T Consensus 157 ~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 157 SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC--CeEEeecccceeeecccCCCccccccccc
Confidence 3 5999999999999986533221 222334789999999988876 5799999999999998210
Q ss_pred ---------------ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe
Q 048118 159 ---------------CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY 223 (303)
Q Consensus 159 ---------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~ 223 (303)
..+..++.+|.++|.++.|++ ...+.+++.|.+|+.||+.++..+.++.......++.++|...
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccc
Confidence 123456889999999999988 6688999999999999999999998888889999999999865
Q ss_pred EE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEec
Q 048118 224 WL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGI 300 (303)
Q Consensus 224 ~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~ 300 (303)
++ ++++|..|++||.+++.-. .....+.+|..++.++.|+|... +|++|+.||++++||+
T Consensus 314 Ll~~gssdr~irl~DPR~~~gs-----------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDGS-----------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred eeeecCCCCceeecCCCCCCCc-----------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 55 5567999999999876311 11234566777899999999876 6889999999999997
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=198.68 Aligned_cols=248 Identities=29% Similarity=0.454 Sum_probs=192.7
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~ 85 (303)
.....|.||.++|.|+.++ .+.+++||.|.+|++||.+.++.. ..+.+|...|.
T Consensus 228 ~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l-----------------------~tlihHceaVL 281 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPL-----------------------NTLIHHCEAVL 281 (499)
T ss_pred HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchh-----------------------hHHhhhcceeE
Confidence 3456789999999999986 358999999999999999866532 24567899999
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEecCCceeeee-ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118 86 SVAFSIDNRQIVSASRDRTIKLWNTLGECKYTI-QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT 164 (303)
Q Consensus 86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 164 (303)
.+.|+. .+++|++.|.++.+||......... ....+|.+.|+.+.|+. .++++++.|.+|++|+..+.+++.+
T Consensus 282 hlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~----kyIVsASgDRTikvW~~st~efvRt 355 (499)
T KOG0281|consen 282 HLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIVSASGDRTIKVWSTSTCEFVRT 355 (499)
T ss_pred EEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----ceEEEecCCceEEEEeccceeeehh
Confidence 999874 4899999999999999765432221 22346888899999874 3899999999999999999999999
Q ss_pred EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCce
Q 048118 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSI 243 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~ 243 (303)
+.+|...|-++.+ .++++++|+.|.+|++||+..|.++..++. ...|+++.|. ++.++.++.||+|++||+.++.-
T Consensus 356 l~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 356 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred hhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-CceeeeccccceEEEEecccccC
Confidence 9999998877765 588999999999999999999998887754 5689999996 56677788899999999976532
Q ss_pred eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 244 VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
-.... . +.-..++..+...+..+.| |...+++++.|-+|.+||.-
T Consensus 433 pra~~---------~--~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 433 PRAPA---------S--TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred Ccccc---------c--chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence 11100 0 0001122234445666776 45689999999999999964
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=188.74 Aligned_cols=206 Identities=27% Similarity=0.460 Sum_probs=176.7
Q ss_pred CceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118 75 GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154 (303)
Q Consensus 75 ~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw 154 (303)
..+.+|+++|+.+.|+|+|..|+||+.|..|.+|+..+++..... .+.|+..|..+.|.+++ ..+++++.|..++.|
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-lkgHsgAVM~l~~~~d~--s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-LKGHSGAVMELHGMRDG--SHILSCGTDKTVRGW 117 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee-eccccceeEeeeeccCC--CEEEEecCCceEEEE
Confidence 456789999999999999999999999999999997666543322 24799999999999986 579999999999999
Q ss_pred ECCCceeEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCC-eEEEEEcCCc
Q 048118 155 NLSNCKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR-YWLCAATEQS 232 (303)
Q Consensus 155 d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~ 232 (303)
|.++++....+++|..-++++.-..-|. ++.+++.|+++++||+++...++++....++.++.|...+ +.+.++-|+.
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 9999999999999999999887444444 5678889999999999999999999888999999999875 6677778999
Q ss_pred EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118 233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~ 303 (303)
|++||++..+.... +++|.-.++.+..+|+|.++.+-+.|.++++||+--|
T Consensus 198 ikvWd~r~~d~~~~--------------------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYT--------------------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred eeeeccccCcceEE--------------------eecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 99999988765443 3455566788999999999999999999999998543
No 51
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=4.6e-28 Score=183.09 Aligned_cols=205 Identities=22% Similarity=0.370 Sum_probs=166.9
Q ss_pred cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118 81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 160 (303)
.+.|+.+...|+++.||+++. ..||+||+.+.....+...+.|+..|.++.|..++ ..+.+|+.||+++|||++...
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg--rWMyTgseDgt~kIWdlR~~~ 116 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG--RWMYTGSEDGTVKIWDLRSLS 116 (311)
T ss_pred ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecC--eEEEecCCCceEEEEeccCcc
Confidence 457999999999999998877 67999998754333455557888889999999886 479999999999999999866
Q ss_pred eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCCCeEEEEE-cCCcEEEEe
Q 048118 161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAA-TEQSIKIWD 237 (303)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd 237 (303)
+.+.++ |..+|+++..+|+...|++|..+|.|++||+.+......+ +....++++...|+|.++++. ..|++++|+
T Consensus 117 ~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 117 CQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWR 195 (311)
T ss_pred cchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEE
Confidence 655555 6789999999999999999999999999999877554433 335689999999999877666 469999999
Q ss_pred CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118 238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~ 303 (303)
+-+......+. +...++.|..++..+.+|||+++||++|.|.++++|++..+
T Consensus 196 l~~~~~~s~l~--------------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 196 LLNHQTASELE--------------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ccCCCccccce--------------EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 97654433322 22336778888999999999999999999999999998653
No 52
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-27 Score=202.71 Aligned_cols=238 Identities=25% Similarity=0.417 Sum_probs=197.9
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceec-ccCCEEEEEEeeCC
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVG-HTKDVLSVAFSIDN 93 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-h~~~i~~i~~~~~~ 93 (303)
.+.|+++.|++++ .+|+.|-.+|.+.|||.....+.. .+.+ |...|-+++|+ +
T Consensus 217 ~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~-----------------------~~~~~h~~rvg~laW~--~ 270 (484)
T KOG0305|consen 217 EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTR-----------------------TLRGSHASRVGSLAWN--S 270 (484)
T ss_pred CCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccc-----------------------cccCCcCceeEEEecc--C
Confidence 6889999999875 689999999999999987543221 2234 88899999998 6
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCee
Q 048118 94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN 173 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 173 (303)
..+.+|+.|+.|..+|+.......- ....|...|..++|++++ ..+++|+.|+.+.|||....++...+..|...|.
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCC--CeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 6899999999999999854322111 245688899999999986 5799999999999999988888889999999999
Q ss_pred EEEECC-CCCEEEEEe--CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE---cCCcEEEEeCCCCceeeee
Q 048118 174 TVAVSP-DGSLCASGG--KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA---TEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 174 ~~~~~~-~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~~~i~iwd~~~~~~~~~~ 247 (303)
.++|+| ...+||+|+ .|++|++||..++..+..+..++.|.++.|++...-++++ .++.|.||+..+.+.+.
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~-- 425 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA-- 425 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee--
Confidence 999999 556888875 6999999999999999999999999999999986433332 46789999987644332
Q ss_pred eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.+.+|...+..+++||||..+++|+.|.++++|++-
T Consensus 426 ------------------~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 426 ------------------ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred ------------------eecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 356677888999999999999999999999999874
No 53
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.3e-27 Score=206.50 Aligned_cols=206 Identities=18% Similarity=0.248 Sum_probs=151.1
Q ss_pred ceecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCcee------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118 76 QFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECK------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD 148 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 148 (303)
.+.+|.+.|.+++|+|+ +.+|++|+.|+.|++|++..... ........|...|.+++|+|++ ...+++++.|
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g-~~iLaSgS~D 147 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN-YYIMCSSGFD 147 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC-CeEEEEEeCC
Confidence 35689999999999997 78999999999999999853211 0111234678889999999975 3456789999
Q ss_pred CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-Ce-----EEEEEEcCCC
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AV-----IHALCFSPNR 222 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~-----v~~~~~s~~~ 222 (303)
+.|++||+++++....+. |...|.+++|+|+|.+|++++.|++|++||+++++.+.++... .. +....|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999888766665 5578999999999999999999999999999999888776432 22 2223456776
Q ss_pred e-EEEEEcCC----cEEEEeCCC-CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118 223 Y-WLCAATEQ----SIKIWDLES-KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR 296 (303)
Q Consensus 223 ~-~l~~~~~~----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~ 296 (303)
. +++++.++ .|++||+++ .+.+.....+. ....+.-...++++.++++|+.|++|+
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~------------------~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN------------------ASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC------------------CccceEEeeeCCCCCEEEEEECCCeEE
Confidence 5 45555553 699999985 33333222110 111111122355688999999999999
Q ss_pred EEecc
Q 048118 297 VWGIG 301 (303)
Q Consensus 297 ~w~~~ 301 (303)
+|++.
T Consensus 289 ~~e~~ 293 (568)
T PTZ00420 289 YYQHS 293 (568)
T ss_pred EEEcc
Confidence 99974
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.3e-28 Score=203.28 Aligned_cols=241 Identities=27% Similarity=0.366 Sum_probs=197.3
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
++-...+|-+..|-+ ..+.+++||.|..|++|+.++.++. ..|.+|.+-|.+++.+
T Consensus 51 feV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV-----------------------~~FeAH~DyIR~iavH 106 (794)
T KOG0276|consen 51 FEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKV-----------------------KTFEAHSDYIRSIAVH 106 (794)
T ss_pred eeecccchhhheeee-ccceEEEecCCceEEEEecccceee-----------------------EEeeccccceeeeeec
Confidence 333344455545543 4689999999999999999876643 1467899999999999
Q ss_pred eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118 91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG 170 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 170 (303)
|...+++|++.|-.|++|+..+. ....+...+|+..|.+++|+|.+ .+.+++++-|++|++|.+....+..++.+|..
T Consensus 107 Pt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek 184 (794)
T KOG0276|consen 107 PTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKD-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEK 184 (794)
T ss_pred CCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCC-ccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence 99999999999999999998654 33445567899999999999986 46899999999999999988888999999999
Q ss_pred CeeEEEECCCC--CEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeee
Q 048118 171 YVNTVAVSPDG--SLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWL-CAATEQSIKIWDLESKSIVED 246 (303)
Q Consensus 171 ~i~~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~ 246 (303)
.|+++.+-+.| .+|++|+.|.+++|||.++.+++.++. +...|..++|+|.-.++ .++.||++++|+..+.++.+.
T Consensus 185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 99999998744 699999999999999999999999886 45789999999987655 456799999999988777655
Q ss_pred eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118 247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV 297 (303)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~ 297 (303)
+... ...+++++-.+.++.+++|.+.|.+.+
T Consensus 265 Ln~g--------------------leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 265 LNYG--------------------LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhcC--------------------CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 4432 234567887788888999998887743
No 55
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=5.3e-29 Score=199.91 Aligned_cols=200 Identities=30% Similarity=0.471 Sum_probs=169.1
Q ss_pred ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118 78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS 157 (303)
Q Consensus 78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~ 157 (303)
.+|..+|.++.|++++.++++|+.+|.|++|+..-.....+ ...|.+.|++++|+|++ ..|++++.||+|+|||..
T Consensus 135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~--~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII--QAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred hhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh--hHhhhhhhheeccCCCC--ceeEEecCCCeEEEEecc
Confidence 48999999999999999999999999999999754322222 23455889999999975 579999999999999998
Q ss_pred CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEE-EcCCcEEE
Q 048118 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCA-ATEQSIKI 235 (303)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~i 235 (303)
..+....+.+|.-.|.++.|+|...++++++.|..|++||.++++++.++. +...|..+.|+|++.+|++ +.|..+++
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 888778889999999999999999999999999999999999999998874 4678999999999987755 56999999
Q ss_pred EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC-CEEEEeecCCeEEEEecc
Q 048118 236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG-STLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~gs~Dg~v~~w~~~ 301 (303)
||+++-+.+. .+++|.-.++++.|+|-. .+|.+|+.||.|..|.+.
T Consensus 291 ~DiR~mkEl~--------------------~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 291 FDIRTMKELF--------------------TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred EehhHhHHHH--------------------HhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 9998543322 234556667889999975 488899999999999875
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.5e-29 Score=198.36 Aligned_cols=227 Identities=26% Similarity=0.466 Sum_probs=179.4
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ 95 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 95 (303)
+.|+|+.++ ++.+++|..|.+|++||.+..+-. ..+.||++.|.|+.|.. +.
T Consensus 198 kgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~-----------------------~~L~GHtGSVLCLqyd~--rv 249 (499)
T KOG0281|consen 198 KGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECL-----------------------KILTGHTGSVLCLQYDE--RV 249 (499)
T ss_pred CceEEEEec---chhhhcccccCceEEeccccHHHH-----------------------HhhhcCCCcEEeeeccc--eE
Confidence 568999885 467999999999999998653211 13568999999998864 48
Q ss_pred EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---eEEEEcCCCCCe
Q 048118 96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---LRATLAGHTGYV 172 (303)
Q Consensus 96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i 172 (303)
+++|+.|.+|++||....+- +...-.|.+.|..+.|+. .++++++.|.++.+||+.... +...+.+|...|
T Consensus 250 iisGSSDsTvrvWDv~tge~--l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 250 IVSGSSDSTVRVWDVNTGEP--LNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred EEecCCCceEEEEeccCCch--hhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 99999999999999865432 222235778899999985 479999999999999996543 445678999999
Q ss_pred eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118 173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDL 251 (303)
Q Consensus 173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~ 251 (303)
+.+.|+ .+++++++.|++|++|+..+.+.+.++... -.|-++.+. +..++.+++|..|++||++.|..+..
T Consensus 324 NvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G~cLRv----- 395 (499)
T KOG0281|consen 324 NVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRV----- 395 (499)
T ss_pred eeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-CeEEEecCCCceEEEEeccccHHHHH-----
Confidence 999986 569999999999999999999998887643 345566653 45555667899999999999877653
Q ss_pred ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+++|...+..+.|. .+.+++|..||+|++||+.
T Consensus 396 ---------------LeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 396 ---------------LEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred ---------------HhchHHhhhheeec--CceeeeccccceEEEEecc
Confidence 34556666778885 5789999999999999985
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=191.85 Aligned_cols=247 Identities=22% Similarity=0.365 Sum_probs=193.7
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
++.+++||...|+.+.++|.. +.+++++.|..|++|........ .....|.++|+.
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~-----------------------~~~~~h~~~V~~ 308 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEP-----------------------TSSRPHEEPVTG 308 (506)
T ss_pred hhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCc-----------------------ccccccccccee
Confidence 355799999999999999875 57999999999999976432100 023469999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA 166 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 166 (303)
+..+|.|+||++++.|+.....|......+.....+...-.+.+..|||++ ..|.+|..||.++|||++.+.....|.
T Consensus 309 ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fp 386 (506)
T KOG0289|consen 309 LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFP 386 (506)
T ss_pred eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceEEEEEcCCccccccCC
Confidence 999999999999999999999888765554444333223357899999997 578899999999999999998889999
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--CeEEEEEEcCCCeEEEEEcCCcEEEEeCC----C
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALCFSPNRYWLCAATEQSIKIWDLE----S 240 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~i~iwd~~----~ 240 (303)
+|.++|..++|+.+|-+|+++++|+.|++||+|..+...++... ..+.+++|.+.|.+|+.+ ...+++|-.. +
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKS 465 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEeccccc
Confidence 99999999999999999999999999999999988776666543 469999999999887766 3345444432 1
Q ss_pred CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
...+.. +..+....+.+.|.....+++++|.|..++++.+
T Consensus 466 W~~~~~--------------------~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKE--------------------LADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeeh--------------------hhhcccccceeeecccceEEeeccchhheEEeec
Confidence 111111 1222223456788888899999999999998864
No 58
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=177.43 Aligned_cols=205 Identities=26% Similarity=0.438 Sum_probs=163.2
Q ss_pred ceecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCceeee--eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118 76 QFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECKYT--IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK 152 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~ 152 (303)
.+.+|++++..++|+|. |..||||+.|+.||+|+..+...+. ....+.|+..|++++|+|.+ .++++++.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g--~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG--RYLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC--cEEEEeeccceEE
Confidence 34689999999999998 8899999999999999986321122 12335788999999999987 4899999999999
Q ss_pred EEECCC--ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---EEEec-CCCeEEEEEEcCCCeEEE
Q 048118 153 VWNLSN--CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---LYSLD-AGAVIHALCFSPNRYWLC 226 (303)
Q Consensus 153 iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~-~~~~v~~~~~s~~~~~l~ 226 (303)
||.-.. .++..++.+|.+.|.+++|+++|++||++++|+.|-||.+..+.. +..++ +..-|..+.|+|..-+|+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 997653 468889999999999999999999999999999999999875443 33332 345688899999865555
Q ss_pred -EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 227 -AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 227 -~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
++.|++|++|+-....- .. -...+.++...+++++|+|.|..|++++.|++|++|.
T Consensus 167 S~SYDnTIk~~~~~~ddd---W~--------------c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDDDD---WE--------------CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred EeccCCeEEEEeecCCCC---ee--------------EEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 55699999998652110 00 0123455666788999999999999999999999997
No 59
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-28 Score=191.04 Aligned_cols=225 Identities=29% Similarity=0.472 Sum_probs=186.8
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC-----------
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG----------- 75 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------- 75 (303)
+...|+||.++|..|+|+..+ .++||+|.|-.+++||..+. ..+.+.+.+|++.|+++.+-|.+
T Consensus 142 ~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~----~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTF----FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred hhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHH----HHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 466799999999999999765 79999999999999998742 23445566777778777765543
Q ss_pred -------------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC----
Q 048118 76 -------------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL---- 138 (303)
Q Consensus 76 -------------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 138 (303)
+|.+|..=|..++.+.||.++++|+.|.+|++|-..... .......|..+|.|++|-|...
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i 294 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSI 294 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcch
Confidence 245888889999999999999999999999999875431 1233456888899999987421
Q ss_pred ---------CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC
Q 048118 139 ---------QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 209 (303)
Q Consensus 139 ---------~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 209 (303)
..++.++++|++|++||+.++.++.++.+|.+.|..++|+|.|++|+++.+|+++++||++++++..++..
T Consensus 295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred hhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 13788999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred -CCeEEEEEEcCCCeEEEEEc-CCcEEEEeC
Q 048118 210 -GAVIHALCFSPNRYWLCAAT-EQSIKIWDL 238 (303)
Q Consensus 210 -~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~ 238 (303)
..-+.++.|..+..++++++ |..+++|.-
T Consensus 375 h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 56789999988876666554 888999864
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-27 Score=179.60 Aligned_cols=200 Identities=23% Similarity=0.387 Sum_probs=161.9
Q ss_pred cCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118 81 TKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC 159 (303)
Q Consensus 81 ~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~ 159 (303)
.+.+..++|++.. ..+++++.||++++||+.. ...++...+.|...|.++.|++... ..++++++|++|++|+..-.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r-~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRR-RIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccc-eeEEeeccCCceEeecCCCC
Confidence 4678899999875 5789999999999999643 3345555567888999999998653 46778899999999999888
Q ss_pred eeEEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCC-CeEEEE-EcCCcEEE
Q 048118 160 KLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPN-RYWLCA-ATEQSIKI 235 (303)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~-~~~l~~-~~~~~i~i 235 (303)
+.+.++.+|+..|...+|+| ..+.++++|.|+++++||++..-....+. +...+.++.|+.- ..+++. +.|+.|++
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 89999999999999999999 56799999999999999998543322344 3468999999874 345544 46999999
Q ss_pred EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC-CEEEEeecCCeEEEEecc
Q 048118 236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG-STLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~gs~Dg~v~~w~~~ 301 (303)
||+++-+ ++...+.+|...+..+.|||.. ..|+++|.|-++|+||..
T Consensus 218 wDir~~r-------------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 218 WDIRNLR-------------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred Eehhhcc-------------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 9997643 2345667888899999999985 489999999999999975
No 61
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.2e-26 Score=202.60 Aligned_cols=218 Identities=17% Similarity=0.270 Sum_probs=165.6
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
.+.+|.+.|++++|+|.++++|+||+.|++|++|++........ ... +-..+.+|...|.+++|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--------~~~--------~l~~L~gH~~~V~~l~f 133 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--------ISD--------PIVHLQGHTKKVGIVSF 133 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--------cCc--------ceEEecCCCCcEEEEEe
Confidence 37899999999999995567999999999999999865321100 000 11235689999999999
Q ss_pred eeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC
Q 048118 90 SIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH 168 (303)
Q Consensus 90 ~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 168 (303)
+|++ .+|++++.|+.|++||+..... ......|...|.+++|+|++ ..+++++.|+.|++||+++++...++.+|
T Consensus 134 ~P~~~~iLaSgs~DgtVrIWDl~tg~~--~~~l~~h~~~V~sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 134 HPSAMNVLASAGADMVVNVWDVERGKA--VEVIKCHSDQITSLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred CcCCCCEEEEEeCCCEEEEEECCCCeE--EEEEcCCCCceEEEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 9985 6899999999999999865432 22234577889999999986 57999999999999999999888888888
Q ss_pred CCC-eeEEEECCCCCEEEEEe----CCCeEEEEeCCCCc-eEEEe--cCCCeEEEEEEcCCCeEEEE-E-cCCcEEEEeC
Q 048118 169 TGY-VNTVAVSPDGSLCASGG----KDGVILLWDLAEGK-RLYSL--DAGAVIHALCFSPNRYWLCA-A-TEQSIKIWDL 238 (303)
Q Consensus 169 ~~~-i~~~~~~~~~~~l~~~~----~d~~v~iwd~~~~~-~~~~~--~~~~~v~~~~~s~~~~~l~~-~-~~~~i~iwd~ 238 (303)
.+. ...+.|.+++..+++++ .|++|++||+++.. ++... .....+....|++++.++++ + .|+.|++||+
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 764 45677888877776654 47999999998654 33333 22345556678998866554 3 4899999999
Q ss_pred CCCceeeee
Q 048118 239 ESKSIVEDL 247 (303)
Q Consensus 239 ~~~~~~~~~ 247 (303)
++++++...
T Consensus 290 ~~~~~~~~~ 298 (493)
T PTZ00421 290 MNERLTFCS 298 (493)
T ss_pred eCCceEEEe
Confidence 988766543
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1e-26 Score=176.97 Aligned_cols=248 Identities=19% Similarity=0.300 Sum_probs=192.8
Q ss_pred eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV 84 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i 84 (303)
+.+....++|.+.|-.++|+|..+++|+|++.|.+|++||+....... . ...++.-
T Consensus 54 ~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~-----~-------------------i~~~~en 109 (313)
T KOG1407|consen 54 FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA-----R-------------------IETKGEN 109 (313)
T ss_pred hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE-----E-------------------eeccCcc
Confidence 344556899999999999999999999999999999999986432211 0 1123344
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118 85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT 164 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 164 (303)
..++|+|+|++++.++.|..|...|....... ........+.-++|+.+. ..++.-...|.|.|...-.-++++.
T Consensus 110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~---~~~~~~~e~ne~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~s 184 (313)
T KOG1407|consen 110 INITWSPDGEYIAVGNKDDRITFIDARTYKIV---NEEQFKFEVNEISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQS 184 (313)
T ss_pred eEEEEcCCCCEEEEecCcccEEEEEeccccee---ehhcccceeeeeeecCCC--CEEEEecCCceEEEEeccccccccc
Confidence 56899999999999999999999987543211 111223345667787432 3444445668999987777788999
Q ss_pred EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCc
Q 048118 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKS 242 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~ 242 (303)
++.|...+.++.|+|+|++||+|+.|..+.+||+..--+++.+. ..-+|+.++||-+|.+||+++ |..|-|-++++|.
T Consensus 185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 99999999999999999999999999999999998877777774 467899999999999998765 7889999999999
Q ss_pred eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC---------CeEEEEeccc
Q 048118 243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD---------GVIRVWGIGR 302 (303)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D---------g~v~~w~~~~ 302 (303)
.+.+++.. .....++|+|...+||-+++| |.|++|++.+
T Consensus 265 ~~~eI~~~---------------------~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 265 RVWEIPCE---------------------GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred eEEEeecc---------------------CCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 88776542 112568999999999977664 6888887753
No 63
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.1e-26 Score=199.36 Aligned_cols=261 Identities=24% Similarity=0.385 Sum_probs=199.7
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC--------------
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG-------------- 75 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------- 75 (303)
++-||+..|-+++++.++ ..+++| ..+.|+||+..... +.+++... .+.+..+.|..
T Consensus 368 ~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~k-----ciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLK-----CIRTITCG--YILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred eeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccCcc-----eeEEeccc--cEEEEEecCCCceEEEeccCCceEE
Confidence 356899999999998543 344444 45799999986432 22222211 22222333322
Q ss_pred ----------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecC------CceeeeeecCC----CCccceEEEEEcC
Q 048118 76 ----------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL------GECKYTIQEGD----AHTEWVSCVRFSP 135 (303)
Q Consensus 76 ----------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~------~~~~~~~~~~~----~~~~~i~~~~~~~ 135 (303)
...+|.+.|+.++.+|+++.++|||+|++|++|+.. +..++.+.... .-++.|.|++++|
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 234899999999999999999999999999999852 11111111000 1134689999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEE
Q 048118 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIH 214 (303)
Q Consensus 136 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~ 214 (303)
++ .+++.+--|.++++|-+.+.+..-.+.||.=||.++.++||++.++|||.|..|+||-+.-|.+-..+ .+...|.
T Consensus 519 dg--k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 519 DG--KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred CC--cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 97 57888999999999999999988899999999999999999999999999999999999988887665 4567899
Q ss_pred EEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118 215 ALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 215 ~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg 293 (303)
++.|-|... +++++.|+.|+-||-+.-+.+..+ .+|..-+++++.+|+|.+++++|.|.
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L--------------------~~H~~ev~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL--------------------DGHHSEVWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheee--------------------ccchheeeeeEEcCCCCeEEeccCCc
Confidence 999999865 556778999999998766555433 34556678899999999999999999
Q ss_pred eEEEEecc
Q 048118 294 VIRVWGIG 301 (303)
Q Consensus 294 ~v~~w~~~ 301 (303)
.+|+|.-.
T Consensus 657 sIRlwE~t 664 (888)
T KOG0306|consen 657 SIRLWERT 664 (888)
T ss_pred eeEeeecc
Confidence 99999643
No 64
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-26 Score=180.83 Aligned_cols=242 Identities=19% Similarity=0.314 Sum_probs=186.1
Q ss_pred cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
...+.+|..+|++++.+ ..++|+||.|.+|+|||+.+..+. +.+..|++.|+++
T Consensus 36 lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql-----------------------g~ll~HagsitaL 89 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL-----------------------GILLSHAGSITAL 89 (362)
T ss_pred cccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh-----------------------cceeccccceEEE
Confidence 34688999999999986 469999999999999999754221 2345689999999
Q ss_pred EEeeCCC--EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118 88 AFSIDNR--QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL 165 (303)
Q Consensus 88 ~~~~~~~--~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 165 (303)
.|.++-. .|++|+.||.|.+|+... .......++|...|+.++.||.+ ...++.+.|+.++.|++-.++.....
T Consensus 90 ~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 90 KFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred EecCCcchhheeeecCCCcEEEEEcCC--eEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceee
Confidence 9998765 899999999999999754 23445567888889999999986 35678899999999999877654433
Q ss_pred cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceee
Q 048118 166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE 245 (303)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~ 245 (303)
+- ....+.+.|+|.|.+|+.++.+ .|-+|.+..-.....+.....+.++.|-..+.++++..++.|.+||......+.
T Consensus 166 ~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 166 NL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred cc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccce
Confidence 32 2344559999999999888765 688998876555444444556777888777888888899999999987643322
Q ss_pred eeeeccccccccccCccceeeccccceeEEEEE--EcCCCCEEEEeecCCeEEEEecc
Q 048118 246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLN--WSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.+..|...+.++. -.|++.+|+|+|+||.|++||+.
T Consensus 244 --------------------~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 244 --------------------EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred --------------------eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 2334455555555 25788899999999999999984
No 65
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.3e-27 Score=191.60 Aligned_cols=272 Identities=26% Similarity=0.414 Sum_probs=207.6
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeee--ecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRR--LTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
.+..|.-+|++++++|++ .+.++++.|++|.=|+...+.+........ +..|-.+ +.+ .. .+|...|.++
T Consensus 137 ~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~-----~k~-~r-~~h~keil~~ 208 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNP-----LKE-SR-KGHVKEILTL 208 (479)
T ss_pred eeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCC-----CCc-cc-ccccceeEEE
Confidence 456788899999999875 589999999999999986543321111110 0001110 001 11 4899999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG 167 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 167 (303)
+.+++|++|++|+.|..|.||+..+.. .++....|...|.+++|-... ..+.+++.|++|++|++.....+.++.+
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyG 284 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYG 284 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccc--hhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhC
Confidence 999999999999999999999986533 233346788999999998654 3688999999999999988888888999
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118 168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~ 247 (303)
|.+.|.++....-++.+.+|+.|+++++|++.....+.-......+-+++|-.+..++.++.+|.|.+|++...+.+...
T Consensus 285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred CccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEe
Confidence 99999999887777788888899999999997655554445567889999988888999999999999999887776554
Q ss_pred eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+.......... --+++.++++++..|...++|+||.+|.||+|.+.
T Consensus 365 ~~AHgv~~~~~--------~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 365 RLAHGVIPELD--------PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eccccccCCcc--------ccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 43222111110 01223688999999999999999999999999874
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.3e-27 Score=205.21 Aligned_cols=206 Identities=25% Similarity=0.415 Sum_probs=167.6
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce------------------------------e-------------
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC------------------------------K------------- 115 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~------------------------------~------------- 115 (303)
+|.+.|+++.|+++|+|||+||.|+.|+||.+...+ .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 899999999999999999999999999999753300 0
Q ss_pred ---------------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC-
Q 048118 116 ---------------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP- 179 (303)
Q Consensus 116 ---------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~- 179 (303)
..+....+|.+.|..+.|+.+ .+|++++.|.+||+|++...+++..|. |.+.|+|++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC---CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 001122367778889999986 479999999999999999999998887 899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccc
Q 048118 180 DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKS 258 (303)
Q Consensus 180 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (303)
|.++|++|+.||.||||++...+.+.-.+....|++++|.|+|+..++ +.+|.+++|+.+.-++.....+......
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K--- 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK--- 497 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc---
Confidence 788999999999999999998887776677889999999999976655 5599999999998877766555433211
Q ss_pred cCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEec
Q 048118 259 EATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGI 300 (303)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~ 300 (303)
-..+. .|+.+.|.|... .|++.+.|..|||||+
T Consensus 498 --------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 498 --------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred --------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 01122 678899987654 6889999999999997
No 67
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-26 Score=180.63 Aligned_cols=270 Identities=23% Similarity=0.390 Sum_probs=219.9
Q ss_pred eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc--------
Q 048118 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------- 76 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------- 76 (303)
..+++.+.||++-|+.++..... .++.|+|.|.+.+||.++. +.++..+++|.+.|+++.+.+.+.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Es-----g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLES-----GACLATYTGHTGSVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred EeehhhhcccccceeeehhhcCC-cceeecccccceeEEeecc-----ccceeeecccccceeeEEeccccceEEEccCC
Confidence 35777899999999999988655 4899999999999999864 567888899999888888776542
Q ss_pred --------------------------------------------------------eecccCCEEEEEEeeCCCEEEEEe
Q 048118 77 --------------------------------------------------------FVGHTKDVLSVAFSIDNRQIVSAS 100 (303)
Q Consensus 77 --------------------------------------------------------~~~h~~~i~~i~~~~~~~~l~t~~ 100 (303)
+++|.+.|.++.|...|++++|++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 348899999999999999999999
Q ss_pred CCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeEEEECC
Q 048118 101 RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNTVAVSP 179 (303)
Q Consensus 101 ~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~ 179 (303)
.|.+..+||....+. +....+|....+.++-+|. +..+++.+.|.+.++||++.. +.+..|++|.+.|+++.|.-
T Consensus 292 WDRTAnlwDVEtge~--v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 292 WDRTANLWDVETGEV--VNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred ccccceeeeeccCce--eccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 999999999865443 3333467777788888886 457889999999999999743 45678999999999999986
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEcC-CcEEEEeCCCCceeeeeeecccccccc
Q 048118 180 DGSLCASGGKDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLKTEAEK 257 (303)
Q Consensus 180 ~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (303)
+ ..+++|+.|.+|++||+++. .++.++...++++.++.+..+.+++.-.| ..|++||+...++..
T Consensus 368 d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR------------ 434 (481)
T KOG0300|consen 368 D-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR------------ 434 (481)
T ss_pred C-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc------------
Confidence 5 46789999999999999864 46788888899999999988888888765 579999997655422
Q ss_pred ccCccceeeccccceeEEEEEEcCCCC--EEEEeecCCeEEEEecc
Q 048118 258 SEATTATTTIKKKNIYCTSLNWSVDGS--TLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~sp~~~--~l~~gs~Dg~v~~w~~~ 301 (303)
.+....++|.--+.+.+|..+.+ .|++++-|..+.-|+++
T Consensus 435 ----lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 435 ----LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ----CCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 12233466777778899987654 69999999999999885
No 68
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-27 Score=205.04 Aligned_cols=246 Identities=24% Similarity=0.390 Sum_probs=193.8
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
++.-...|..++|+|..+ .++|+--.|.|++||..- +.++ .+|..|.++|..++|+
T Consensus 5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM-----~tli------------------~rFdeHdGpVRgv~FH 60 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM-----GTLI------------------DRFDEHDGPVRGVDFH 60 (1202)
T ss_pred hhcccccccceecCCCCC-EEEEeecCceeeeehhhh-----hhHH------------------hhhhccCCccceeeec
Confidence 344446789999999864 899999999999999742 2222 2466799999999999
Q ss_pred eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118 91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG 170 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 170 (303)
|.+.+|++||.|..|+||+.... ..+...-+|-+.|+.+.||+. .+.+++++.|.+|+||+..+.+++..+.+|+-
T Consensus 61 ~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnH 136 (1202)
T KOG0292|consen 61 PTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNH 136 (1202)
T ss_pred CCCCeEEecCCccEEEEEecccc--eehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence 99999999999999999997542 222333478899999999986 47899999999999999999999999999999
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---------------------------EEEe--c-CCCeEEEEEEcC
Q 048118 171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---------------------------LYSL--D-AGAVIHALCFSP 220 (303)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---------------------------~~~~--~-~~~~v~~~~~s~ 220 (303)
.|.|..|+|....++++|.|.+|||||+..-+. +... . +.-.|+-++|+|
T Consensus 137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 999999999999999999999999999843110 0000 0 122467789999
Q ss_pred CCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 221 NRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 221 ~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
.-.+++++ .|..|++|.+...+.=. + .+..+|...+.++-|+|...++++.|+|+++|+||
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKaWE---v---------------DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKAWE---V---------------DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred CcceEEecCCcceeeEEEecccccee---e---------------hhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 87666554 57889999986544211 1 12345555678899999999999999999999999
Q ss_pred ccc
Q 048118 300 IGR 302 (303)
Q Consensus 300 ~~~ 302 (303)
..+
T Consensus 279 m~k 281 (1202)
T KOG0292|consen 279 MTK 281 (1202)
T ss_pred ccc
Confidence 854
No 69
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=178.56 Aligned_cols=263 Identities=24% Similarity=0.328 Sum_probs=187.5
Q ss_pred cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcccc-ceeeeeecCCCcceEEEEeCCC------------
Q 048118 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY-GVARRRLTGHSHFVQDVVLSSD------------ 74 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~------------ 74 (303)
...|++|.+.|++++|+.++ .+|+|++.|++|++|+....+..- ...+..+... -...+.++|+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d--hpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD--HPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCC--CceEEEECCCcceEEEEEccCC
Confidence 34699999999999999765 689999999999999986543211 1111111110 0112222222
Q ss_pred ------------Cce-------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceE
Q 048118 75 ------------GQF-------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVS 129 (303)
Q Consensus 75 ------------~~~-------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~ 129 (303)
|.+ ..|+-.|..+-....+.++++++.|..|.+|++.+.....+. .....-.
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~id---tnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSID---TNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeec---ccccccc
Confidence 211 145567777878888899999999999999999765433322 2222234
Q ss_pred EEEEcCCCCCCEEEEEeCCCcEEEEEC---CCce-----eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 048118 130 CVRFSPNTLQPTIVSASWDRTVKVWNL---SNCK-----LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 201 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~dg~i~iwd~---~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~ 201 (303)
..+.+|++ .++++++..--|++|.. +++. ...++++|...|+.++|+|+.+.+++.|.||++++||..-.
T Consensus 233 ~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 233 DAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred ceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 57789987 46788888888999975 2222 34578899999999999999999999999999999997432
Q ss_pred ----c---eEEEe-----cCC-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecc
Q 048118 202 ----K---RLYSL-----DAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIK 268 (303)
Q Consensus 202 ----~---~~~~~-----~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (303)
+ .+... ..+ .++ .++.+|.+..|+++....|.+|..+.++.+..++ .
T Consensus 311 Y~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-------------------~ 370 (420)
T KOG2096|consen 311 YEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-------------------D 370 (420)
T ss_pred EecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecCCceEEEEcccCccchhHH-------------------H
Confidence 2 12222 112 344 6899999999999999999999999887665442 2
Q ss_pred ccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 269 KKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 269 ~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
.|...+.+++|+|+|+++++++ |..++++.
T Consensus 371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 2445578899999999999987 77777764
No 70
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=173.72 Aligned_cols=243 Identities=23% Similarity=0.356 Sum_probs=190.1
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~ 85 (303)
.++.++.+|...|..++...++. .|++|+.|..+.+||.+.+... .++.+|.+.|+
T Consensus 50 ~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGkv~-----------------------Rr~rgH~aqVN 105 (307)
T KOG0316|consen 50 ALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNTGKVD-----------------------RRFRGHLAQVN 105 (307)
T ss_pred ceeeeecCCCceeeecccccccc-ccccCCCCceEEEEEcccCeee-----------------------eecccccceee
Confidence 46678999999999988876664 6999999999999999764321 25678999999
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118 86 SVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL 165 (303)
Q Consensus 86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 165 (303)
.+.|+.+...+++|+.|.++++||.......+++..+.....|.++..... .+++|+.||.+|.||++.+++...+
T Consensus 106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h----eIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 106 TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH----EIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc----EEEeeccCCcEEEEEeecceeehhh
Confidence 999999999999999999999999877655566655556677888887643 6999999999999999999877666
Q ss_pred cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---CCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCC
Q 048118 166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---GAVIHALCFSPNRY-WLCAATEQSIKIWDLESK 241 (303)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~ 241 (303)
-+ .+|++++|+++++..+.++.|+++++.|-.+|+.+..... ...-..++++.... .+.++.||.+++||+...
T Consensus 182 ~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 182 FG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred cC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 55 5899999999999999999999999999999987766532 12233455665544 445667999999999988
Q ss_pred ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118 242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w 298 (303)
.++..+... ..+-+.+++++|.-.-|+++..-+ +..|
T Consensus 260 ~~~sk~~~~-------------------~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 260 TQISKLSVV-------------------STVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred eeeeeeccC-------------------CceeEEeeecccCccceeEecCCc-eece
Confidence 877665432 123357899999877677666433 3344
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=200.31 Aligned_cols=243 Identities=28% Similarity=0.496 Sum_probs=189.2
Q ss_pred ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118 4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD 83 (303)
Q Consensus 4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~ 83 (303)
+..+...+.||.+.|.++.++- +++++++|+.|.++++||..+++ +... +.+|.+.
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~-----C~~~------------------l~gh~st 293 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGE-----CTHS------------------LQGHTSS 293 (537)
T ss_pred ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCc-----EEEE------------------ecCCCce
Confidence 3344545999999999999974 67899999999999999976543 3332 3467777
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 163 (303)
|.++... +.++++|+.|.+|++|++........ ..+|..+|.++..+. .++++|+.|++|++||..+++++.
T Consensus 294 v~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l--~~~h~~~V~~v~~~~----~~lvsgs~d~~v~VW~~~~~~cl~ 365 (537)
T KOG0274|consen 294 VRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNL--LRGHTGPVNCVQLDE----PLLVSGSYDGTVKVWDPRTGKCLK 365 (537)
T ss_pred EEEEEcc--CceEeeccCCceEEEEeccCcceEEE--eccccccEEEEEecC----CEEEEEecCceEEEEEhhhceeee
Confidence 7776654 34678899999999999874433222 234899999999882 489999999999999999999999
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-KRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLESK 241 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~ 241 (303)
++.+|...|.++.+.+. ..+++|+.|++|++||+++. +++.++.. ...+..+.+. +..++..+.|+.|++||.+++
T Consensus 366 sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 366 SLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred eecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-cceeEeccccccEEEeecccC
Confidence 99999999999988765 88999999999999999999 88877754 3455555443 445666678999999999999
Q ss_pred ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+.+..+... +...+..+.+. ...+++++.||.+++||+.
T Consensus 444 ~~~~~~~~~-------------------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 444 ECLRTLEGR-------------------HVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred ceeeeeccC-------------------CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 887765431 11223444443 4689999999999999984
No 72
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9e-26 Score=175.08 Aligned_cols=249 Identities=18% Similarity=0.300 Sum_probs=185.4
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR 94 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 94 (303)
.|.|.+|+|+|....+++.+|-|++||+|++.......+ .....|.++|.+++|+.+|.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~---------------------ka~~~~~~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP---------------------KAQQSHDGPVLDVCWSDDGS 85 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc---------------------hhhhccCCCeEEEEEccCCc
Confidence 478999999997677888999999999999975321110 12345889999999999999
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118 95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 174 (303)
.+++|+.|+.+++||+.......+ ..|..+|.++.|-+......+++|++|.+|++||.+...+..++.- .+.+.+
T Consensus 86 kVf~g~~Dk~~k~wDL~S~Q~~~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa 161 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASGQVSQV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYA 161 (347)
T ss_pred eEEeeccCCceEEEEccCCCeeee---eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeee
Confidence 999999999999999977644333 4688899999998765455899999999999999998777766654 356666
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCceEEE-e--cCCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCceeee--ee
Q 048118 175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYS-L--DAGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIVED--LK 248 (303)
Q Consensus 175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~--~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~--~~ 248 (303)
+..- ..+++++..++.|.+++++.+...+. + +..-.+++++..+++ .++.++-+|++.+..+..+....+ ++
T Consensus 162 ~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 162 ADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred hhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 5542 35778888899999999987654332 2 234568888877775 345566799999998877533222 23
Q ss_pred eccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 249 VDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.+..... ..+.-..+++++|+|....|+|+++||+..+||-+
T Consensus 240 CHR~~~~-----------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 240 CHRSTNS-----------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EeccCCC-----------CCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 3322110 01112347899999999999999999999999863
No 73
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=8.2e-27 Score=187.66 Aligned_cols=243 Identities=25% Similarity=0.438 Sum_probs=193.3
Q ss_pred eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV 84 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i 84 (303)
.+++++|.|..+.|+.+.+.+++ ..++++++|+.+++|+...... + .++.||++.|
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~-----~------------------~TLsGHtdkV 264 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRL-----R------------------HTLSGHTDKV 264 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhh-----h------------------hhhcccccce
Confidence 45678899999999999999886 4788999999999999864211 0 2466899999
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118 85 LSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 163 (303)
+++.|......+++|+.|.+|++||+.. .+...+... .....+..++ ..+++|=.|+.|++||.+...+..
T Consensus 265 t~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~----S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 265 TAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG----SQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred eeehhhccccceeeccccchhhhhhhhhhheecccccc----ccccceEecc----eeeeecccccceEEEeccCCceee
Confidence 9999998887899999999999999853 232222211 1223333332 247788899999999999988888
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-----CCeEEEEEEcCCCeEEE-EEcCCcEEEEe
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-----GAVIHALCFSPNRYWLC-AATEQSIKIWD 237 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~-~~~~~~i~iwd 237 (303)
+...+. .|+++..++++..+++++.|.++++.|+++.+....+.. .+-++.+.|||++.+++ ++.||+|+||+
T Consensus 337 sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 337 SVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred EeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEE
Confidence 887754 899999999999999999999999999999887766642 34577889999986664 56799999999
Q ss_pred CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118 238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w 298 (303)
+.++++.+.+..... ...+++++|+|.|..|++++.++.+++|
T Consensus 416 v~tgKlE~~l~~s~s------------------~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 416 VFTGKLEKVLSLSTS------------------NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccCceEEEEeccCCC------------------CcceEEEEEcCCCchhhcccCCcceEec
Confidence 999998877654211 1256889999999999999999999999
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-25 Score=171.91 Aligned_cols=260 Identities=21% Similarity=0.337 Sum_probs=186.8
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccC-------ccccceeeeeecCCCcce-----------EEEEeC
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKE-------EKTYGVARRRLTGHSHFV-----------QDVVLS 72 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~-------~~~~~~~~~~~~~~~~~i-----------~~~~~~ 72 (303)
++.-...|+++.|++++ +.+++++.|.+|++||.... .+++++....+.+|+..+ +.+.+.
T Consensus 10 f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred cccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 44445679999999765 68899999999999998754 355677777777765533 222222
Q ss_pred CCC---ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118 73 SDG---QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD 148 (303)
Q Consensus 73 ~~~---~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 148 (303)
.+. -|.||...|++++.+|-+..+++++.|++|++||++. .+...+ +...-..++|.|++ .+++.+...
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l-----~~~~~pi~AfDp~G--LifA~~~~~ 161 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL-----NLSGRPIAAFDPEG--LIFALANGS 161 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE-----ecCCCcceeECCCC--cEEEEecCC
Confidence 111 1469999999999999999999999999999999863 222212 12223467899987 366777666
Q ss_pred CcEEEEECCCc--eeEEEEc---CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC----CCeEEEEEEc
Q 048118 149 RTVKVWNLSNC--KLRATLA---GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA----GAVIHALCFS 219 (303)
Q Consensus 149 g~i~iwd~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s 219 (303)
+.|++||++.. .+-.++. +-....+.+.|||+|++++.+...+.+.+.|.-+|..+.++.. ...--..+|+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 69999999763 2223332 2356789999999999999999999999999999998777642 1122467899
Q ss_pred CCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118 220 PNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 220 ~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w 298 (303)
||++++.++ .||+|.+|+++++..+..++.. ....+..+.|+|...++++++. .+.+|
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------------------~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------------------NGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------------------CCCCccccccCCceeeeeecCc--eEEEE
Confidence 999776555 5799999999999877654421 1222345779998877777654 45566
Q ss_pred e
Q 048118 299 G 299 (303)
Q Consensus 299 ~ 299 (303)
=
T Consensus 301 ~ 301 (311)
T KOG1446|consen 301 L 301 (311)
T ss_pred e
Confidence 3
No 75
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=181.20 Aligned_cols=220 Identities=28% Similarity=0.519 Sum_probs=179.3
Q ss_pred eeeecCCCcceEEEEeCCCCc------------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 048118 56 RRRLTGHSHFVQDVVLSSDGQ------------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL 111 (303)
Q Consensus 56 ~~~~~~~~~~i~~~~~~~~~~------------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~ 111 (303)
.+.+.+|.++|.++.+.|..+ +.||...|..+++++-..|+.+++.|+.|+-||+.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 344567788888887776543 24677778888888888888888888888888875
Q ss_pred CceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCC
Q 048118 112 GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 191 (303)
.+ ..+....+|-..|.|++.+|.. ..+++|+.|..+|+||+++...+..+.+|..+|..+.+.|....+++||.|+
T Consensus 224 ~n--kvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 224 YN--KVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred hh--hhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 43 2344445788889999999974 4799999999999999999999999999999999999999888999999999
Q ss_pred eEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecccc
Q 048118 192 VILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKK 270 (303)
Q Consensus 192 ~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (303)
+|++||++.++...++ .+...+++++.+|....+|+++...|+.|++-.++++.++ .++
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nl--------------------sgh 359 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNL--------------------SGH 359 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcc--------------------ccc
Confidence 9999999998877665 4567899999999999999999999999999888776543 233
Q ss_pred ceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 271 NIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 271 ~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
+.-++.++-..| .++++|++.|.+..||.
T Consensus 360 ~~iintl~~nsD-~v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 360 NAIINTLSVNSD-GVLVSGGDNGSIMFWDW 388 (460)
T ss_pred cceeeeeeeccC-ceEEEcCCceEEEEEec
Confidence 444566665544 58899999999999986
No 76
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.3e-25 Score=193.95 Aligned_cols=214 Identities=14% Similarity=0.223 Sum_probs=156.5
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~ 88 (303)
..+++|.+.|.+++|+|..+++|+||+.|++|++|++........ .. .. +...+.+|...|.+++
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----~i---~~--------p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----EI---KD--------PQCILKGHKKKISIID 132 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----cc---cc--------ceEEeecCCCcEEEEE
Confidence 468899999999999997678999999999999999864321000 00 00 1113567999999999
Q ss_pred EeeCCCE-EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118 89 FSIDNRQ-IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG 167 (303)
Q Consensus 89 ~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 167 (303)
|+|++.. +++++.|+.|++||+......... .+...|.+++|+|++ ..+++++.|+.|++||+++++...++.+
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i---~~~~~V~SlswspdG--~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI---NMPKKLSSLKWNIKG--NLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE---ecCCcEEEEEECCCC--CEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 9999875 578999999999998654322111 134569999999986 4788889999999999999998888999
Q ss_pred CCCCeeE-----EEECCCCCEEEEEeCCC----eEEEEeCCC-CceEEEecCCC---eEEEEEEcCCCeEE-EEEcCCcE
Q 048118 168 HTGYVNT-----VAVSPDGSLCASGGKDG----VILLWDLAE-GKRLYSLDAGA---VIHALCFSPNRYWL-CAATEQSI 233 (303)
Q Consensus 168 ~~~~i~~-----~~~~~~~~~l~~~~~d~----~v~iwd~~~-~~~~~~~~~~~---~v~~~~~s~~~~~l-~~~~~~~i 233 (303)
|.+.+.. ..|++++.+|++++.|+ +|++||++. ++++..+.... .+......+++.++ ++..|+.|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 9876433 33568888998887664 799999985 55665543322 22222223446544 55689999
Q ss_pred EEEeCCCCc
Q 048118 234 KIWDLESKS 242 (303)
Q Consensus 234 ~iwd~~~~~ 242 (303)
++|++..+.
T Consensus 288 r~~e~~~~~ 296 (568)
T PTZ00420 288 RYYQHSLGS 296 (568)
T ss_pred EEEEccCCc
Confidence 999997654
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.1e-25 Score=200.43 Aligned_cols=277 Identities=22% Similarity=0.319 Sum_probs=190.5
Q ss_pred ccccc-cceeeeecCCCCCcEEEEec--CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 11 MRAHT-DMVTAIATPIDNSDMIVTAS--RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 11 ~~~h~-~~v~~v~~~~~~~~~~~t~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+-+|. ..|++|..+|++. .|+||+ .|+.++||+...--.......-.++.+ -.+...|.+.|+|+
T Consensus 8 wv~H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~-----------l~~m~~h~~sv~CV 75 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKH-----------LCTMDDHDGSVNCV 75 (942)
T ss_pred ccccCCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchh-----------heeeccccCceeEE
Confidence 33444 5699999999874 799999 899999998754211100000001101 12345799999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCC-----c-----------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLG-----E-----------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV 151 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~-----~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i 151 (303)
.|+|+|++||+|+.|+.|.+|+... . ....+.....|...|..++|+|++ .++++++.|++|
T Consensus 76 R~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsV 153 (942)
T KOG0973|consen 76 RFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSV 153 (942)
T ss_pred EECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceE
Confidence 9999999999999999999998641 0 011223345688899999999976 589999999999
Q ss_pred EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-------CCCeEEEEEEcCCCeE
Q 048118 152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-------AGAVIHALCFSPNRYW 224 (303)
Q Consensus 152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~~~~ 224 (303)
.+|+..+.+....+.+|.+.|..+.|.|-|++||+-+.|++|+||+..+-...+.+. .....+.+.|||||.+
T Consensus 154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred EEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence 999999999999999999999999999999999999999999999966544444432 2346778899999988
Q ss_pred EEEEc-----CCcEEEEeCCCCceeee----------eeecc---ccccc---cccCc----c-----------------
Q 048118 225 LCAAT-----EQSIKIWDLESKSIVED----------LKVDL---KTEAE---KSEAT----T----------------- 262 (303)
Q Consensus 225 l~~~~-----~~~i~iwd~~~~~~~~~----------~~~~~---~~~~~---~~~~~----~----------------- 262 (303)
|++.. ...+.|.+-.+.+.-.+ .+... ..... ..... .
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 87642 22466655443321111 11100 00000 00000 0
Q ss_pred --ceeec-cccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 263 --ATTTI-KKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 263 --~~~~~-~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+...+ .-....+.+++|+|||..|+++|.||+|.+....
T Consensus 314 ~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 314 PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 00000 0012236899999999999999999999998653
No 78
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-25 Score=194.79 Aligned_cols=226 Identities=26% Similarity=0.414 Sum_probs=189.1
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ--------- 76 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------- 76 (303)
+++..+..|.++|-.|.|+|.. .+|++||.|-+|++|+... ..++-.+.+|..+|+.+.+.++-.
T Consensus 42 tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~-----rrclftL~GHlDYVRt~~FHheyPWIlSASDDQ 115 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKT-----RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQ 115 (1202)
T ss_pred hHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEeccc-----ceehhhhccccceeEEeeccCCCceEEEccCCC
Confidence 3556788999999999999986 5999999999999999864 345667788888888887765321
Q ss_pred ---------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-------------------------
Q 048118 77 ---------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY------------------------- 116 (303)
Q Consensus 77 ---------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~------------------------- 116 (303)
++||..-|-|.+|+|...+++++|-|.+|||||+.+-.+.
T Consensus 116 TIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D 195 (1202)
T KOG0292|consen 116 TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD 195 (1202)
T ss_pred eEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence 4699999999999999999999999999999997432111
Q ss_pred --eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee--EEEEcCCCCCeeEEEECCCCCEEEEEeCCCe
Q 048118 117 --TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL--RATLAGHTGYVNTVAVSPDGSLCASGGKDGV 192 (303)
Q Consensus 117 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 192 (303)
.....++|...|+.++|+|.- +.+++|+.|.-|++|.+...+. +.+..+|.+.|+++-|+|...++++.|+|++
T Consensus 196 aVVK~VLEGHDRGVNwaAfhpTl--pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks 273 (1202)
T KOG0292|consen 196 AVVKHVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS 273 (1202)
T ss_pred eeeeeeecccccccceEEecCCc--ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc
Confidence 011235688889999999964 6899999999999999876553 3567899999999999999999999999999
Q ss_pred EEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118 193 ILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 239 (303)
Q Consensus 193 v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 239 (303)
|+|||+...+.+.++.. ......++-+|..++++++.|+-+.+|-++
T Consensus 274 irVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 274 IRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred EEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 99999999999998854 568888999999999999999988888875
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.6e-26 Score=186.89 Aligned_cols=213 Identities=26% Similarity=0.453 Sum_probs=169.8
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
+|++|.+.=+.++|++.....+++++.|++|++||+....... -...+...+.+|+..|..++|
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~----------------~~~~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED----------------KVVDPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC----------------ccccceEEeecCCcceehhhc
Confidence 5788988889999999988999999999999999997433210 012233457899999999999
Q ss_pred eeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcC
Q 048118 90 SIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAG 167 (303)
Q Consensus 90 ~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~ 167 (303)
++.. .+|++++.|+.+.|||++..........++|...+.|++|+|.. ...|++|+.|++|.+||+++. ++..++.+
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccC
Confidence 9864 58999999999999998753333344556899999999999976 468999999999999999874 56788999
Q ss_pred CCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCce--------------EEEe-cCCCeEEEEEEcCCCeEEEE--Ec
Q 048118 168 HTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKR--------------LYSL-DAGAVIHALCFSPNRYWLCA--AT 229 (303)
Q Consensus 168 ~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~--------------~~~~-~~~~~v~~~~~s~~~~~l~~--~~ 229 (303)
|...|..+.|+|.. ..||+++.|+++.|||+..-.. ++.. .+...|..+.|+|...++.+ +.
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 99999999999965 5789999999999999853111 1111 13467999999999876644 46
Q ss_pred CCcEEEEeCC
Q 048118 230 EQSIKIWDLE 239 (303)
Q Consensus 230 ~~~i~iwd~~ 239 (303)
|+.+.||...
T Consensus 395 DN~LqIW~~s 404 (422)
T KOG0264|consen 395 DNILQIWQMA 404 (422)
T ss_pred CceEEEeecc
Confidence 8999999974
No 80
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.2e-26 Score=191.25 Aligned_cols=250 Identities=20% Similarity=0.364 Sum_probs=192.6
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
.+++| .|.+.|.++.++... +.+.||+. |.|++||+...+. ..+++.+.... ...-|.+
T Consensus 412 q~~tL-~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~------------k~PvsqLdcl~------rdnyiRS 470 (705)
T KOG0639|consen 412 QINTL-AHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN------------KSPVSQLDCLN------RDNYIRS 470 (705)
T ss_pred hhhhh-ccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCC------------CCccccccccC------cccceee
Confidence 34444 488899999888654 57899887 6899999975422 12222222111 2234678
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA 166 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 166 (303)
+...|+|+.|++|+.-.++.|||+...................+++.+|+. ...++++.||.|.|||+.++..+..++
T Consensus 471 ckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDa--kvcFsccsdGnI~vwDLhnq~~Vrqfq 548 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA--KVCFSCCSDGNIAVWDLHNQTLVRQFQ 548 (705)
T ss_pred eEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc--ceeeeeccCCcEEEEEcccceeeeccc
Confidence 999999999999999999999998654322111111111234568888875 467889999999999999999999999
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceee
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVE 245 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~ 245 (303)
+|.+.+.++.++++|..|=+|+.|.+||.||++++..+...+-.+.|.++.++|.+.|++++. ++.+.+-.....+.
T Consensus 549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-- 626 (705)
T KOG0639|consen 549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-- 626 (705)
T ss_pred CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc--
Confidence 999999999999999999999999999999999999888777778999999999999999886 56677766543322
Q ss_pred eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
+-+..|...+.++.|++.|+++++.+.|+.+..|..
T Consensus 627 -------------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 627 -------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred -------------------eeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 223446677889999999999999999999999853
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.1e-25 Score=190.06 Aligned_cols=260 Identities=26% Similarity=0.420 Sum_probs=192.8
Q ss_pred ccceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEE-EEeCC-------
Q 048118 2 AEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQD-VVLSS------- 73 (303)
Q Consensus 2 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~------- 73 (303)
|.+..+...+++|...|..+++.+ +..++++|.|+++++|+-...+- .....+.++.++|.. +++.+
T Consensus 1 ~~~Y~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~---l~~~~~~~~~g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 1 MPQYKLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQY---LETHAFEGPKGFIANSICYAESDKGRLV 75 (745)
T ss_pred CCcceeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCccc---ccceecccCcceeeccceeccccCcceE
Confidence 356688899999999999888764 34799999999999997633211 111223344455544 33332
Q ss_pred ------------------CCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcC
Q 048118 74 ------------------DGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135 (303)
Q Consensus 74 ------------------~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~ 135 (303)
-..+.+|+..|.+++...++. +++|+.|.++++|... +.... ..+|+..|.+++.-|
T Consensus 76 ~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-~l~~~---l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-ELVYS---LQGHTASVWAVASLP 150 (745)
T ss_pred eecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch-hhhcc---cCCcchheeeeeecC
Confidence 123579999999999888877 9999999999999763 22222 358999999999988
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEE
Q 048118 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIH 214 (303)
Q Consensus 136 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~ 214 (303)
+. .+++|+.|..|++|.- +++.+++.+|++.|..+++-+++ .|++++.||.|+.|++ +++.+... .+.+.++
T Consensus 151 e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vY 223 (745)
T KOG0301|consen 151 EN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVY 223 (745)
T ss_pred CC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEE
Confidence 74 6999999999999964 77889999999999999998764 6789999999999999 56666554 5577899
Q ss_pred EEE-EcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118 215 ALC-FSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 215 ~~~-~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg 293 (303)
+++ ..+++.+++++.|+++++|+.. +....+..+ . .-++++.+-+.| -+++|++||
T Consensus 224 sis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP------------------t--tsiWsa~~L~Ng-DIvvg~SDG 280 (745)
T KOG0301|consen 224 SISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP------------------T--TSIWSAKVLLNG-DIVVGGSDG 280 (745)
T ss_pred EEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC------------------c--cceEEEEEeeCC-CEEEeccCc
Confidence 998 5556777888899999999976 333333221 1 123445544443 478899999
Q ss_pred eEEEEecc
Q 048118 294 VIRVWGIG 301 (303)
Q Consensus 294 ~v~~w~~~ 301 (303)
.||+|-..
T Consensus 281 ~VrVfT~~ 288 (745)
T KOG0301|consen 281 RVRVFTVD 288 (745)
T ss_pred eEEEEEec
Confidence 99999654
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-25 Score=182.41 Aligned_cols=237 Identities=24% Similarity=0.416 Sum_probs=186.7
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
+.--++.|+++.|..+ +++++.|...|.|++||+.+.. .++ .+.+|+.+|..+.|+
T Consensus 64 ~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~-----iLR------------------~~~ah~apv~~~~f~ 119 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRV-----ILR------------------QLYAHQAPVHVTKFS 119 (487)
T ss_pred HHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHH-----HHH------------------HHhhccCceeEEEec
Confidence 4445678999999866 4789999999999999954311 111 356799999999999
Q ss_pred eCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCC
Q 048118 91 IDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGH 168 (303)
Q Consensus 91 ~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~ 168 (303)
|.+ ..+++|+.|+.+++||+.+... ......|++.|.|.+|+|... ..+++|+.||.|++||.+.. ....++ .|
T Consensus 120 ~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~el-nh 195 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVEL-NH 195 (487)
T ss_pred ccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCC-eEEEecCCCceEEEEEeccCCceeEEe-cC
Confidence 865 5788889999999999866442 334568999999999999653 37899999999999999876 444444 47
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceEEEe-cCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceee
Q 048118 169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-KRLYSL-DAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVE 245 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~ 245 (303)
..+|..+.+-|.|..+++++. ..|++||+.+| +.+... ++...|+|+++..++. +++++-|+.+++||+.+.+++.
T Consensus 196 g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence 889999999999999988864 58999999854 444444 3678999999998875 5566679999999988888776
Q ss_pred eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118 246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV 297 (303)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~ 297 (303)
.++.. ..+.+++.+|++..++.|-.||.+-+
T Consensus 275 s~~~~---------------------~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 275 SWKYP---------------------GPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred eeecc---------------------cceeeEEecCCCceEEEecccceeee
Confidence 65532 24578999999999999999998854
No 83
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=200.14 Aligned_cols=233 Identities=24% Similarity=0.422 Sum_probs=179.3
Q ss_pred eeecCCCCCcEEEEecCCCcEEEEEcccC--ccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC-CCEE
Q 048118 20 AIATPIDNSDMIVTASRDKSIIVWHLTKE--EKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID-NRQI 96 (303)
Q Consensus 20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~-~~~l 96 (303)
.|.|..-..++|||++..|.|.+||+... ++.. --|..|+-.+++++|++. ..+|
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l----------------------~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL----------------------TVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhh----------------------hHhhhhccceeeeeeccCCccEE
Confidence 45566555689999999999999999752 1110 025678999999999985 5689
Q ss_pred EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeEE
Q 048118 97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNTV 175 (303)
Q Consensus 97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~ 175 (303)
++|++||.|++||++... .........+.|+.++|+|.. ...|+++...|.+++||++.. ++...+..|.++|.++
T Consensus 150 iSGSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred EecCCCceEEEEeeeccc--ccccccccchhhhceeeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence 999999999999985432 222233456779999999975 578999999999999999764 4667788999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCc--eEEEecCCCeEEEEEEcCCC-eEEEEEc---CCcEEEEeCCCCceeeeeee
Q 048118 176 AVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNR-YWLCAAT---EQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 176 ~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~-~~l~~~~---~~~i~iwd~~~~~~~~~~~~ 249 (303)
.|+|++.+||+|++|++|+|||..+++ .+.++....++..+.|.|.. ..|+.++ |-.|++||++..-+.
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP----- 301 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP----- 301 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc-----
Confidence 999999999999999999999997543 46677778899999999986 4555543 778999999764321
Q ss_pred ccccccccccCccceeeccccceeEEEEEEcC-CCCEEEEeecCCeEE
Q 048118 250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSGYTDGVIR 296 (303)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~gs~Dg~v~ 296 (303)
..++..|...++.++|-. |...|.+++.||+|.
T Consensus 302 --------------~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 302 --------------YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred --------------ceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 122333444456677854 456788999999873
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=4.9e-27 Score=177.74 Aligned_cols=242 Identities=23% Similarity=0.355 Sum_probs=199.1
Q ss_pred cccccccceeeeecCC--CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 10 TMRAHTDMVTAIATPI--DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~--~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+-++|..+|-.++|+| +.+=+|++++.|+.-.+=+-.. ..+| |.|.+|++.|++.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t---------------gdwi--------gtfeghkgavw~~ 65 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT---------------GDWI--------GTFEGHKGAVWSA 65 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC---------------CCcE--------EeeeccCcceeee
Confidence 3678999999999988 3445778888887544322111 1222 4678999999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEEEE
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATL 165 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~ 165 (303)
+.+.+..+.+++++|-+.++||... .+...+ .|...|.+++|+.+. .++++|+.+..+|+||++..+ +..++
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhsf----~hkhivk~~af~~ds--~~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHSF----EHKHIVKAVAFSQDS--NYLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhhh----hhhheeeeEEecccc--hhhhccchHHHhhhhhccCCCCCchhh
Confidence 9999999999999999999999643 222222 366678999999886 579999999999999997643 56788
Q ss_pred cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceee
Q 048118 166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE 245 (303)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~ 245 (303)
.+|.+.|..+-|-...+.+++++.|++||+||.+++..++++...++|.++.++++|.+++.+..+.|.+||.++-.+++
T Consensus 140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee
Confidence 99999999999887778888889999999999999999999999999999999999999999999999999999998888
Q ss_pred eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.++++.. +.+.+.+|+...+++|+.|+.++.||..
T Consensus 220 s~k~P~n---------------------V~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 220 SYKMPCN---------------------VESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred eccCccc---------------------cccccccCCCceEEecCcceEEEEEecc
Confidence 7776422 3456778999999999999999999864
No 85
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=8.5e-25 Score=204.37 Aligned_cols=205 Identities=22% Similarity=0.411 Sum_probs=162.5
Q ss_pred CceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118 75 GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD 148 (303)
Q Consensus 75 ~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 148 (303)
+.+..|.+.|.+++|+|++.++++|+.|+.|+||+...... ...... .+...+.+++|+|.. ...+++++.|
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~-~~~las~~~D 554 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYI-KSQVASSNFE 554 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCC-CCEEEEEeCC
Confidence 44567999999999999999999999999999999642110 001111 123468899998854 3579999999
Q ss_pred CcEEEEECCCceeEEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcC-CCeEE-
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSP-NRYWL- 225 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l- 225 (303)
|.|++||+.+++....+.+|.+.|++++|+| ++.+|++|+.|++|++||+++++.+..+.....+.++.|++ ++.++
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA 634 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence 9999999999988889999999999999997 78899999999999999999998888877667888999954 56555
Q ss_pred EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 226 CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 226 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+++.|+.|++||+++.+... ..+.+|...+..+.|. ++.+|++|+.|++|++||+.
T Consensus 635 tgs~dg~I~iwD~~~~~~~~-------------------~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPL-------------------CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EEeCCCeEEEEECCCCCccc-------------------eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 45579999999997653210 1123344556788886 67899999999999999974
No 86
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=1.5e-26 Score=189.60 Aligned_cols=221 Identities=23% Similarity=0.415 Sum_probs=170.4
Q ss_pred ceecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118 76 QFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw 154 (303)
.+.+|+..|.++.|.| .+.+|++++.|+.|+||++-.. ...+....+|+.+|..++|++++ ..+++++.|+.+++|
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g--~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCG--TSFLSASFDRFLKLW 285 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccC--Ceeeeeecceeeeee
Confidence 4679999999999999 8899999999999999998552 23344456899999999999987 469999999999999
Q ss_pred ECCCceeEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCC-eEEEEEcCC
Q 048118 155 NLSNCKLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNR-YWLCAATEQ 231 (303)
Q Consensus 155 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~~ 231 (303)
|.+++++...+.. ...++++.|+|++ +.|++|+.|+.|+-||+++++.++.+.. -..|..+.|-+++ .++.++.|+
T Consensus 286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 9999999888864 3467999999988 7889999999999999999998777654 3678899999987 456667789
Q ss_pred cEEEEeCCCCceeeeeee---ccccc-----------cccccCcccee------------ecccc--ceeEEEEEEcCCC
Q 048118 232 SIKIWDLESKSIVEDLKV---DLKTE-----------AEKSEATTATT------------TIKKK--NIYCTSLNWSVDG 283 (303)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~---~~~~~-----------~~~~~~~~~~~------------~~~~~--~~~~~~~~~sp~~ 283 (303)
++++|+.+....++...- ...+. ++.....+..+ .+.+| ..+...+.|||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 999999987755543211 00000 01111111111 11122 2345678999999
Q ss_pred CEEEEeecCCeEEEEec
Q 048118 284 STLFSGYTDGVIRVWGI 300 (303)
Q Consensus 284 ~~l~~gs~Dg~v~~w~~ 300 (303)
.+|++|+.||.+.+||.
T Consensus 445 ~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDW 461 (503)
T ss_pred CeEEeecCCccEEEeec
Confidence 99999999999999986
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.4e-26 Score=191.24 Aligned_cols=244 Identities=22% Similarity=0.399 Sum_probs=188.5
Q ss_pred eeecCCCCCcEEEEecCCCcEEEEEcccCccccc-eeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEE
Q 048118 20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYG-VARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVS 98 (303)
Q Consensus 20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t 98 (303)
.+..+++++++|.|||.||.|++|+......... .....+.+ |.+=|+.+....+++.|++
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~------------------HsDWVNDiiL~~~~~tlIS 90 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH------------------HSDWVNDIILCGNGKTLIS 90 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh------------------hHhHHhhHHhhcCCCceEE
Confidence 4556677788999999999999999865432111 12333444 4445556666677889999
Q ss_pred EeCCCcEEEEecCCceeeeeecCCCCccceEEEEE-cCCCCCCEEEEEeCCCcEEEEECCCcee--E--------EEEc-
Q 048118 99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRF-SPNTLQPTIVSASWDRTVKVWNLSNCKL--R--------ATLA- 166 (303)
Q Consensus 99 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~dg~i~iwd~~~~~~--~--------~~~~- 166 (303)
++.|-+|++|+........+.....|.++|.|++. -++ ...+++||-|+.|.+||++.+.. . ..+.
T Consensus 91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred ecCCceEEEeecccCcchhHhhhhcccchheeeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 99999999999765433334444568999999998 444 35799999999999999986521 1 2233
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCcee
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIV 244 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~ 244 (303)
++..+|.+++.++.|..+++|+..+.+++||.++++.+-.+. +..-|+.+..++|| .++.+++||.|++||+..++.+
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 778899999999999999999999999999999988776664 45789999999998 5777889999999999988776
Q ss_pred eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118 245 EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~ 303 (303)
..+.+ |...++++.-+|+-.++.+|+.||.|..=|+.+|
T Consensus 249 ~T~~v--------------------H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 249 ATYIV--------------------HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeEEe--------------------ccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 65443 2233677888899999999999999988887654
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=2e-24 Score=177.58 Aligned_cols=202 Identities=34% Similarity=0.578 Sum_probs=167.7
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
.+.+|.++|.+++|+|+++++++++.|+.+++|+...... ......|...+..+.|.|++ ..+++++.++.|++|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LRTLKGHTGPVRDVAASADG--TYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--EEEEecCCcceeEEEECCCC--CEEEEEcCCCeEEEEE
Confidence 4568999999999999999999999999999999864322 12223466678899999975 4789999999999999
Q ss_pred CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEc-CCcE
Q 048118 156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAAT-EQSI 233 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i 233 (303)
+.+++....+..|...+.++.|+|+++++++++.|+.+++||+++++.+..+. ....+.+++|+|++.+++++. ++.|
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 99877778888888899999999998888888889999999999888777765 456799999999988887777 9999
Q ss_pred EEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 234 KIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
++||+++++.+..+. .+...+.++.|+|++..+++++.||.+++||+.
T Consensus 160 ~i~d~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 160 KLWDLRTGKCVATLT--------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred EEEEccccccceeEe--------------------cCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 999998766544332 122345779999999999999999999999985
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=9.8e-25 Score=176.85 Aligned_cols=237 Identities=26% Similarity=0.401 Sum_probs=190.6
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ 95 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 95 (303)
..++++...|. ...++||+.|.++.++|....... ..|.||+..|+.+.++++...
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l-----------------------~~~~Gh~kki~~v~~~~~~~~ 275 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQIL-----------------------ATLKGHTKKITSVKFHKDLDT 275 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhh-----------------------hhccCcceEEEEEEeccchhh
Confidence 45777777776 568999999999999997643211 146789999999999999999
Q ss_pred EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC--CCCee
Q 048118 96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH--TGYVN 173 (303)
Q Consensus 96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~ 173 (303)
+++++.|..|++|...... .......|..+|+.+..+|.+ .++++++.|+..-+.|++++......... .-.++
T Consensus 276 v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred eeecCCcceEEeecccccc--CccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 9999999999999864322 223345789999999999987 58999999999999999998876555432 23589
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeecc
Q 048118 174 TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDL 251 (303)
Q Consensus 174 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~ 251 (303)
+.+|+|||..|.+|..|+.|+|||+.++..+..|+ +..+|..++|+.+|+||+++. |+.|++||+|.-+..+.+..+-
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999988777775 467999999999999998765 5669999998766555443221
Q ss_pred ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
. ..+.++.|.+.|.+|+.+++|=.|++++
T Consensus 432 ------------------~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 432 ------------------K-KEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ------------------c-ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 1 1356789999999999999888887775
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3.2e-26 Score=184.25 Aligned_cols=248 Identities=25% Similarity=0.407 Sum_probs=193.8
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~ 88 (303)
..+..|...|..+-|-++ .+.|+||+.|..|++|+....... . .+.+.|-.++|+++.
T Consensus 169 ~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~-------------~--------~~tLaGs~g~it~~d 226 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSE-------------L--------ISTLAGSLGNITSID 226 (459)
T ss_pred hhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhh-------------h--------hhhhhccCCCcceee
Confidence 357889999999999875 468999999999999987432100 0 012345567899999
Q ss_pred EeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC
Q 048118 89 FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH 168 (303)
Q Consensus 89 ~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 168 (303)
|.+++.++++.+.|+.+++|+...... .....+|++.|.++.|.... ..+++|+.|.+|+.||+....+..++-.
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~--~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~- 301 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRL--RHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP- 301 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhh--hhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-
Confidence 999999999999999999999854322 22234699999999998764 3489999999999999988777665442
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeee
Q 048118 169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~ 247 (303)
...+..+..+ ...+++|-.|++|+.||.++..+....+.+..|.++..++++. +++++-|..+.+.|+++.++...+
T Consensus 302 ~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 302 GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 3456677766 4567888899999999999999999999999999999999985 556666999999999988776554
Q ss_pred eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.-.-. ....-++.+.|||++.|+++||.||.|++|++.
T Consensus 380 sA~g~----------------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 380 SAEGF----------------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred ecccc----------------ccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 32110 011225678899999999999999999999874
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.5e-24 Score=166.73 Aligned_cols=242 Identities=18% Similarity=0.314 Sum_probs=175.2
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR 94 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 94 (303)
.+.|..+.|+|.+ +.|+.++-||++++|+....+... ...|..++.+++|.++ .
T Consensus 13 ~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~------------------------~~~~~~plL~c~F~d~-~ 66 (323)
T KOG1036|consen 13 EDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKL------------------------KFKHGAPLLDCAFADE-S 66 (323)
T ss_pred hhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhh------------------------heecCCceeeeeccCC-c
Confidence 4679999999765 456667799999999987543211 1237889999999874 4
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118 95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 174 (303)
.+++|+.||.|+++|+.......+ ..|..+|.|+...+.. ..+++|++|+.|++||.+.......+.. ...|.+
T Consensus 67 ~~~~G~~dg~vr~~Dln~~~~~~i---gth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~ 140 (323)
T KOG1036|consen 67 TIVTGGLDGQVRRYDLNTGNEDQI---GTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC 140 (323)
T ss_pred eEEEeccCceEEEEEecCCcceee---ccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence 688999999999999976554433 3578889999999753 5799999999999999986444444432 347777
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---cCCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCce----eee
Q 048118 175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL---DAGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSI----VED 246 (303)
Q Consensus 175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~----~~~ 246 (303)
+..+ +..|++|+.|..+.+||++......+. .....++++++-|++ -+++++-+|+|.+=.++..+. .-.
T Consensus 141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 7664 678999999999999999876543322 234679999999965 466777799887755444311 111
Q ss_pred eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.+.+.... .. ..-...+++++|+|-..+|+||+.||.|.+||+.
T Consensus 219 FkCHr~~~----~~-------~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 219 FKCHRLSE----KD-------TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred EEeeeccc----CC-------ceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 22221111 00 0012346899999999999999999999999985
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-23 Score=155.42 Aligned_cols=263 Identities=18% Similarity=0.225 Sum_probs=190.0
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEE--EEeCCCCceecccCC
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQD--VVLSSDGQFVGHTKD 83 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~h~~~ 83 (303)
+-+.+|+. ..+|-+++|+|.+ .+.+.||+..++++-......... .+|..+.+. +.+ .+-+-|.+.
T Consensus 24 ~~i~~l~d-sqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r-------~~hea~~~pp~v~~---kr~khhkgs 91 (350)
T KOG0641|consen 24 EAINILED-SQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLR-------HAHEAAKQPPSVLC---KRNKHHKGS 91 (350)
T ss_pred EEEEEecc-hhheeeEEecCCC-ceEEeccCCceEEEEccccccCcc-------cccccccCCCeEEe---eeccccCcc
Confidence 33444443 3578899999986 578999999999987654221110 112221110 111 123458999
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeee---eecCCCCccceEEEEEcCCC--CCCEEEEE-eCCCcEEEEECC
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYT---IQEGDAHTEWVSCVRFSPNT--LQPTIVSA-SWDRTVKVWNLS 157 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~--~~~~~~~~-~~dg~i~iwd~~ 157 (303)
|+|.+|+|+|++++||++|+.|++..+..+.-.. -....-|...|..++|-.++ ....++++ ..|-.|++-|..
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~ 171 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG 171 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC
Confidence 9999999999999999999999997654332110 11223467789999986443 23344543 345567777888
Q ss_pred CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--------CCeEEEEEEcCCCeEEEEEc
Q 048118 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--------GAVIHALCFSPNRYWLCAAT 229 (303)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~ 229 (303)
.++..+.+.+|.+-|.++ ++-++-.+++|+.|.+|++||++-...+.++.. .+.|.+++..|.|.+|+.+.
T Consensus 172 ~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 172 RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 888888999999999876 344678999999999999999998877776532 25789999999999888774
Q ss_pred -CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 230 -EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 230 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
|.+..+||++.++.+..+. .|...+.++.|||...||++||.|..|++-|++
T Consensus 251 ~dssc~lydirg~r~iq~f~--------------------phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQRFH--------------------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCCceEEEEeeCCceeeeeC--------------------CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 7899999999988776442 233456789999999999999999999998874
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.2e-23 Score=154.05 Aligned_cols=255 Identities=25% Similarity=0.368 Sum_probs=184.1
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~ 85 (303)
.+..+.+.|+++|+|.+|+|.+ ++++|||+|.+|++..++..... ..+ ++-++.-|.+.|.
T Consensus 80 v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~-------~~g-----------~dle~nmhdgtir 140 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCN-------ATG-----------HDLEFNMHDGTIR 140 (350)
T ss_pred EEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEeccccccc-------ccC-----------cceeeeecCCcee
Confidence 3445577899999999999875 79999999999999877543211 111 2235667999999
Q ss_pred EEEEeeC----CCEEEEEeCCCcEEEE--ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118 86 SVAFSID----NRQIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC 159 (303)
Q Consensus 86 ~i~~~~~----~~~l~t~~~d~~i~vw--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~ 159 (303)
.++|-.+ +..|+++++ |-.++| |.... ..++...+|+.-|.++ ++.++ ..+++|+.|.+|++||++-.
T Consensus 141 dl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g--~~~~a~sghtghilal-yswn~--~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 141 DLAFLDDPESGGAILASAGA-GDCKIYITDCGRG--QGFHALSGHTGHILAL-YSWNG--AMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred eeEEecCCCcCceEEEecCC-CcceEEEeecCCC--CcceeecCCcccEEEE-EEecC--cEEEccCCCceEEEEeeecc
Confidence 9999754 346666654 445555 43222 1233445677777776 22332 47899999999999999887
Q ss_pred eeEEEEcC--C-----CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCe-EEEEEcC
Q 048118 160 KLRATLAG--H-----TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRY-WLCAATE 230 (303)
Q Consensus 160 ~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~ 230 (303)
.++.++.. | ...|.+++..|.|++|++|-.|..+.+||++.+++++.+ ++...|+++.|+|... +|.++.|
T Consensus 215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc
Confidence 77766532 1 256899999999999999999999999999999999887 4567899999999975 4566679
Q ss_pred CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.+|++-|+.. .+.+++.+- ....|.--+..+.|+|+.--+++.|.|.++.+|-+.
T Consensus 295 ~~ikltdlqg-dla~el~~~---------------vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 295 MKIKLTDLQG-DLAHELPIM---------------VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEeeccc-chhhcCceE---------------EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999853 333333211 011111223457899998889999999999999763
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=5.9e-24 Score=186.17 Aligned_cols=233 Identities=30% Similarity=0.523 Sum_probs=186.8
Q ss_pred cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
|...+.+..+. ++++++++.|++|++|+...... .. .++.||.+.|.++++..-+
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~----i~------------------~~l~GH~g~V~~l~~~~~~ 261 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYL----IL------------------TRLVGHFGGVWGLAFPSGG 261 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccceE----EE------------------eeccCCCCCceeEEEecCC
Confidence 44557777776 46899999999999999864321 00 1356899999999999878
Q ss_pred CEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCe
Q 048118 94 RQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV 172 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 172 (303)
..+++|+.|.++++||... .+... ...|...+.++...+ ..+++|+.|.+|++|++.+++++..+.+|.++|
T Consensus 262 ~~lvsgS~D~t~rvWd~~sg~C~~~---l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V 334 (537)
T KOG0274|consen 262 DKLVSGSTDKTERVWDCSTGECTHS---LQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV 334 (537)
T ss_pred CEEEEEecCCcEEeEecCCCcEEEE---ecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccE
Confidence 8999999999999999754 33333 347888899988765 368889999999999999999999999999999
Q ss_pred eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC-ceeeeeeec
Q 048118 173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLESK-SIVEDLKVD 250 (303)
Q Consensus 173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~-~~~~~~~~~ 250 (303)
.++.++ +.++++|+.|++|++||..+++++.++.. ...|+++.+.+...++.++.|+.|++||+++. +.+..+
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl--- 409 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTL--- 409 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhh---
Confidence 999997 78999999999999999999999998864 57899998876556677788999999999987 444333
Q ss_pred cccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 251 LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
+.+...+..+ ...+.+|++++.||+|++||...
T Consensus 410 -----------------~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 410 -----------------QGHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred -----------------cCCccccccc--ccccceeEeccccccEEEeeccc
Confidence 3333344333 34678999999999999999754
No 95
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-23 Score=162.33 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=153.4
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC--CCcEEEEE
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW--DRTVKVWN 155 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--dg~i~iwd 155 (303)
...+.|+++.|+++|.++++++.|..++|||.... ....+. .+...+..++|-... ..++.++. |.+||.-+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~--~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHS--NTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCC--ceEEEccCCCCCceEEEE
Confidence 34678999999999999999999999999997543 222222 233346667776543 34555555 88999999
Q ss_pred CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCC-cEE
Q 048118 156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIK 234 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~ 234 (303)
+.+++.++.+.||...|.+++.+|-+..+++++.|++|++||++..++...+.... -..++|.|+|.++|++.++ .|+
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEE
Confidence 99999999999999999999999999999999999999999999777655444322 2346899999999888765 899
Q ss_pred EEeCCCCceeee--eeec-----------ccccccccc------------Cc--cceeecc---ccceeEEEEEEcCCCC
Q 048118 235 IWDLESKSIVED--LKVD-----------LKTEAEKSE------------AT--TATTTIK---KKNIYCTSLNWSVDGS 284 (303)
Q Consensus 235 iwd~~~~~~~~~--~~~~-----------~~~~~~~~~------------~~--~~~~~~~---~~~~~~~~~~~sp~~~ 284 (303)
+||+|.-..-.. ..+. ..+.++... +. ....++. .......+..|+||++
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 999986422111 1111 000000000 00 0000110 1111124678999999
Q ss_pred EEEEeecCCeEEEEecc
Q 048118 285 TLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 285 ~l~~gs~Dg~v~~w~~~ 301 (303)
++++|+.||+|++|++.
T Consensus 246 Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEEEecCCCcEEEEEcC
Confidence 99999999999999974
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=5e-24 Score=162.34 Aligned_cols=205 Identities=22% Similarity=0.363 Sum_probs=164.9
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
.+.+|.+.+.+++|+.+|..+++|+.|+++++|++.......-.....|...|-.++|+|.. ...+++++.|.+|++||
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIWD 93 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEEE
Confidence 45688999999999999999999999999999998654322223345677778889999865 45799999999999999
Q ss_pred CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EEEcCCcEE
Q 048118 156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CAATEQSIK 234 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~ 234 (303)
.+.+++...+....+. ..+.|+|+|++++++..|..|...|.++.+.....+....++-++|+.++.++ .....|.|.
T Consensus 94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999988777654333 45789999999999999999999999998888777777788888998666544 444558888
Q ss_pred EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
|...-.-+ +..+++.|...|.++.|+|+|+++|+|+.|-.+-+||++.
T Consensus 173 ILsypsLk--------------------pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 173 ILSYPSLK--------------------PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred EEeccccc--------------------cccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence 86653222 1234567778889999999999999999999999999863
No 97
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=7.3e-24 Score=169.05 Aligned_cols=280 Identities=19% Similarity=0.300 Sum_probs=191.0
Q ss_pred ccccccccceeeeecCCC-CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 9 GTMRAHTDMVTAIATPID-NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~-~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
...-+|.+-++.+...+- +.-+.++.+..|.+++|++.+.-+.. ......+......|-..+.+|.+.-+.+
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l-------~~~~~~~~~s~~~Pl~t~~ghk~EGy~L 217 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNAL-------SEPGLEVKDSEFRPLFTFNGHKGEGYGL 217 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhh-------cCccccccccccCceEEecccCccceee
Confidence 345678888888776663 56788888999999999997532111 0011111112223334677899999999
Q ss_pred EEeeC-CCEEEEEeCCCcEEEEecCCceeee-eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--eEE
Q 048118 88 AFSID-NRQIVSASRDRTIKLWNTLGECKYT-IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--LRA 163 (303)
Q Consensus 88 ~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--~~~ 163 (303)
+|+|- ...++||.--+.|++|......... ....-.|+..|..++|+|.- ...|++|+.||+|+|||++.++ ...
T Consensus 218 dWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE-~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 218 DWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE-DGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred ecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCcc-CceEEeeecCceEEEEEecCCCcccee
Confidence 99993 3468888878889999875432211 12234588889999999975 4689999999999999998863 223
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC---CceEEEec-CCCeEEEEEEcCC--CeEEEEEcCCcEEEEe
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE---GKRLYSLD-AGAVIHALCFSPN--RYWLCAATEQSIKIWD 237 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd 237 (303)
..+.|.+.|+.+.|+-.-.+||+|+.||+++|||++. ++++.++. +..+|+++.|+|. ..+++++.|++|.+||
T Consensus 297 ~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 297 STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 3478999999999998777999999999999999975 45666664 4689999999996 4566778899999999
Q ss_pred CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEE
Q 048118 238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVW 298 (303)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w 298 (303)
+.--.-..+.... ......+.+.+........-.+..+.|+++-+ +|++.+.||.-.+.
T Consensus 377 lsvE~D~ee~~~~--a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 377 LSVEADEEEIDQE--AAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred eeccCChhhhccc--cccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 8422111000000 00000112222222333333456789999854 88899999976443
No 98
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=5.3e-23 Score=159.46 Aligned_cols=220 Identities=23% Similarity=0.360 Sum_probs=163.4
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcce-EEEEeCCCCceecccCCEEEEEE
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV-QDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
.+.|.+.|+++.+.+..++++++|+.||.|.+||++...... .+..| ..+.+.....-.+|+-.|..+.|
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e---------~s~li~k~~c~v~~~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE---------ASGLIAKHKCIVAKQHENGHKYAISSAIW 109 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchh---------hccceeheeeeccccCCccceeeeeeeEE
Confidence 467889999999999888999999999999999997532110 00000 00111111233578889999999
Q ss_pred ee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC-CCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118 90 SI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL-QPTIVSASWDRTVKVWNLSNCKLRATLAG 167 (303)
Q Consensus 90 ~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 167 (303)
-| |...|.+++.|+.++|||......-.. ...++.|.+-+++|-.. +-.+++|..+-.|++.|+..+.+...+.+
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~---F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVD---FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG 186 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEE---eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence 98 567899999999999999864322111 12345577777777432 34677888889999999999999999999
Q ss_pred CCCCeeEEEECCCCCE-EEEEeCCCeEEEEeCCCC-ceEEEe---------------cCCCeEEEEEEcCCCeEE-EEEc
Q 048118 168 HTGYVNTVAVSPDGSL-CASGGKDGVILLWDLAEG-KRLYSL---------------DAGAVIHALCFSPNRYWL-CAAT 229 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~-~~~~~~---------------~~~~~v~~~~~s~~~~~l-~~~~ 229 (303)
|.+.|.++.|+|..++ |++|+.||.|++||++.- -+...+ .....++.++|+.++..+ ..+.
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 9999999999998775 689999999999999753 222221 123578999999998655 5678
Q ss_pred CCcEEEEeCCCCc
Q 048118 230 EQSIKIWDLESKS 242 (303)
Q Consensus 230 ~~~i~iwd~~~~~ 242 (303)
|.++++|+..+|+
T Consensus 267 d~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 267 DDRIRVWNMESGR 279 (397)
T ss_pred ccceEEeecccCc
Confidence 9999999987653
No 99
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.9e-23 Score=181.33 Aligned_cols=242 Identities=23% Similarity=0.340 Sum_probs=188.8
Q ss_pred cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceec-ccCCEEEEEEe
Q 048118 12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVG-HTKDVLSVAFS 90 (303)
Q Consensus 12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-h~~~i~~i~~~ 90 (303)
.+|+.--+.|++.|++ +++.||+.||.|++|+....+... .... +...|.+++.
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P-----------------------~ti~~~g~~v~~ia~- 64 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEP-----------------------ETIDISGELVSSIAC- 64 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCC-----------------------chhhccCceeEEEee-
Confidence 4677778999999886 599999999999999876442100 0111 3445555553
Q ss_pred eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118 91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG 170 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 170 (303)
...+|++|+.++.|.+|.+.......+. ..-+.++.+++++-++ ..++.|+.|-.|++-++.+......+++|.+
T Consensus 65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL--~Rftlp~r~~~v~g~g--~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 65 -YSNHFLTGSEQNTVLRYKFPSGEEDTIL--ARFTLPIRDLAVSGSG--KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred -cccceEEeeccceEEEeeCCCCCcccee--eeeeccceEEEEecCC--cEEEeecCceeEEEEeccccchheeecccCC
Confidence 4458999999999999987543221111 1234568899998876 4789999999999999988888888999999
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec---------CCCeEEEEEEcCC-CeEEEEEcCCcEEEEeCCC
Q 048118 171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD---------AGAVIHALCFSPN-RYWLCAATEQSIKIWDLES 240 (303)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~ 240 (303)
+|.++.|+|.+++||+.+-||+|++||+.++....++. ....+..++|+|+ |.+++.+.++.|.+|+..+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 99999999999999999999999999999887665542 1345778999999 6888999999999999998
Q ss_pred CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.+....+..+.. ...+..+.|+|.|+|||+++.||.|.|||+.
T Consensus 220 we~~f~Lr~~~~------------------ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 220 WELQFKLRDKLS------------------SSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ceeheeeccccc------------------ccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 877665543211 1114679999999999999999999999986
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=3e-24 Score=177.57 Aligned_cols=209 Identities=21% Similarity=0.347 Sum_probs=161.0
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
.-+||...+++.+|+|.+.+.|+|+|.||++|+|+.....+...+...+.. .+-.-+++.++|
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~-----------------~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA-----------------GGKRVPVTSCAW 325 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC-----------------CCcccCceeeec
Confidence 357999999999999999999999999999999998754332222111110 123346889999
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCcc--ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEEEE
Q 048118 90 SIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTE--WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATL 165 (303)
Q Consensus 90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~ 165 (303)
+++|.++|+|+.||+|.+|+..+.... .....++|.. .|.|+.|++++ ++|++-+.|+++++||++..+ ++.+.
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg--~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG--NYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc--chhhhccCCCceeeeeccccccchhhh
Confidence 999999999999999999997433221 1223356665 79999999987 579999999999999998743 44433
Q ss_pred cCC--CCCeeEEEECCCCCEEEEEeC------CCeEEEEeCCCCceEEEecC-CCeEEEEEEcCC-CeEEEEEcCCcEEE
Q 048118 166 AGH--TGYVNTVAVSPDGSLCASGGK------DGVILLWDLAEGKRLYSLDA-GAVIHALCFSPN-RYWLCAATEQSIKI 235 (303)
Q Consensus 166 ~~~--~~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~-~~~l~~~~~~~i~i 235 (303)
.+- .-+-+.++|||+.+++++|+. .|++.++|..+-+.++.+.. ...|..+.|+|. .++++++.||.+++
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 332 124577899999999999853 46899999999888888754 567888999997 67888899999998
Q ss_pred Ee
Q 048118 236 WD 237 (303)
Q Consensus 236 wd 237 (303)
|=
T Consensus 484 yY 485 (641)
T KOG0772|consen 484 YY 485 (641)
T ss_pred EE
Confidence 74
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.7e-23 Score=159.76 Aligned_cols=205 Identities=22% Similarity=0.383 Sum_probs=167.4
Q ss_pred eCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118 71 LSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150 (303)
Q Consensus 71 ~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~ 150 (303)
+.|...+.+|.++|++++.+ +.++++|+.|.+|+|||...... ....-.|.+.|+++.|.+......+++|+.||.
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q--lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ--LGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh--hcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 44556778999999999875 78999999999999999854322 222234788899999998765457999999999
Q ss_pred EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC
Q 048118 151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE 230 (303)
Q Consensus 151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 230 (303)
|.+|+.....+...+++|.+.|+.++++|.+++-++.+.|+.+++||+-+|+.-+..........+.|+|.|..++.+..
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999998887666666666666999999988888888
Q ss_pred CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+.|-+|.+++.++...+..+. .+.++.| -++.+|++|.+|+.+++||-+
T Consensus 189 ~~i~i~q~d~A~v~~~i~~~~---------------------r~l~~~~-l~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIENPK---------------------RILCATF-LDGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred cEEEEEecccHhHhhhhhccc---------------------cceeeee-cCCceEEEecCCceEEEeccC
Confidence 999999998887765543220 1122333 367899999999999999875
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.9e-23 Score=166.46 Aligned_cols=262 Identities=17% Similarity=0.249 Sum_probs=180.5
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------------------
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ------------------- 76 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------- 76 (303)
..|+++.|+|.. ..+++|+.|++++||.+....+. ....+--...+|....+.|+|+
T Consensus 214 ~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~---~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 214 GGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNP---KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CCceEEEecCCC-ceEEEecCCCcEEEEEecCccCh---hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 679999999875 68999999999999988532111 1111111223444444544443
Q ss_pred --------eeccc-CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC
Q 048118 77 --------FVGHT-KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW 147 (303)
Q Consensus 77 --------~~~h~-~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 147 (303)
..++. ..+....+++++.+++..|..|.|.|-...+.+..... .-++.+..++|+.++ ..++.++.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---KieG~v~~~~fsSds--k~l~~~~~ 364 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---KIEGVVSDFTFSSDS--KELLASGG 364 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---eeccEEeeEEEecCC--cEEEEEcC
Confidence 01222 13445566677777777777777776543322221111 124457889999776 46777888
Q ss_pred CCcEEEEECCCceeEEEEcCCCC-CeeEEEECCCCCEEEEEeCCCeEEEEeCCC------CceEEEe-cCCCeEEEEEEc
Q 048118 148 DRTVKVWNLSNCKLRATLAGHTG-YVNTVAVSPDGSLCASGGKDGVILLWDLAE------GKRLYSL-DAGAVIHALCFS 219 (303)
Q Consensus 148 dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~------~~~~~~~-~~~~~v~~~~~s 219 (303)
+|.|.+||++...+...+....+ .-++++.++++.+||+|+..|.|.|||..+ .+++.++ +....|.+++|+
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 99999999999988887765322 236788899999999999999999999653 3455544 345789999999
Q ss_pred CCCeEEEEEc---CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118 220 PNRYWLCAAT---EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR 296 (303)
Q Consensus 220 ~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~ 296 (303)
++.++||.++ .+.+++=.+-+..+.++.... ...-.++++++|||.+.+||.|..+|.|+
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-----------------n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-----------------NTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCC-----------------CCcccceEEEEecCCCceEEeecCCCcee
Confidence 9999998765 456777766655554443321 11234678999999999999999999999
Q ss_pred EEecccC
Q 048118 297 VWGIGRY 303 (303)
Q Consensus 297 ~w~~~~~ 303 (303)
+|.+.+|
T Consensus 508 l~kL~hy 514 (514)
T KOG2055|consen 508 LFKLHHY 514 (514)
T ss_pred eEeeccC
Confidence 9999998
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-23 Score=159.01 Aligned_cols=213 Identities=23% Similarity=0.334 Sum_probs=163.1
Q ss_pred eeecccccccccceeeeec-CCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118 5 LVLKGTMRAHTDMVTAIAT-PIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD 83 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~-~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~ 83 (303)
..++.+|.||.++|+.++| +|.-+.+||+|+.||.+.||+-..+. +.....+..|...
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~---------------------w~k~~e~~~h~~S 104 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR---------------------WTKAYEHAAHSAS 104 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc---------------------hhhhhhhhhhccc
Confidence 4677889999999999986 45566899999999999999764321 1111234579999
Q ss_pred EEEEEEeeC--CCEEEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCC------------CEEEEEeCC
Q 048118 84 VLSVAFSID--NRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQ------------PTIVSASWD 148 (303)
Q Consensus 84 i~~i~~~~~--~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~d 148 (303)
|++++|.|. |-.|++++.||.|.|.+.... ..........|.-.+++++|.|.... ..|++|+.|
T Consensus 105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD 184 (299)
T KOG1332|consen 105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD 184 (299)
T ss_pred ceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc
Confidence 999999986 468999999999999987654 22222334578888999999986321 359999999
Q ss_pred CcEEEEECCCce--eEEEEcCCCCCeeEEEECCCC----CEEEEEeCCCeEEEEeCCCCceE--EEe--cCCCeEEEEEE
Q 048118 149 RTVKVWNLSNCK--LRATLAGHTGYVNTVAVSPDG----SLCASGGKDGVILLWDLAEGKRL--YSL--DAGAVIHALCF 218 (303)
Q Consensus 149 g~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~v~iwd~~~~~~~--~~~--~~~~~v~~~~~ 218 (303)
..|+||+..++. ...++.+|.+.|..++|.|.- .++++++.||+|.||-.+..... .++ .-...+..++|
T Consensus 185 n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW 264 (299)
T KOG1332|consen 185 NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW 264 (299)
T ss_pred cceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE
Confidence 999999987753 445688999999999999953 37899999999999987532111 111 12467999999
Q ss_pred cCCCeEEEEE-cCCcEEEEeC
Q 048118 219 SPNRYWLCAA-TEQSIKIWDL 238 (303)
Q Consensus 219 s~~~~~l~~~-~~~~i~iwd~ 238 (303)
|..|++|+++ .|+++.+|.-
T Consensus 265 S~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 265 SLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred eccccEEEEecCCcEEEEEEe
Confidence 9999988766 5889999964
No 104
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.5e-23 Score=179.04 Aligned_cols=217 Identities=26% Similarity=0.373 Sum_probs=173.2
Q ss_pred cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+-+.++|.++|+.++..|++. .++|||.|.+|++|+..-.....+.....+.-+ ..+...-+..|.|+
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~-----------~~rtLel~ddvL~v 514 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK-----------HTRTLELEDDVLCV 514 (888)
T ss_pred hhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeec-----------cceEEeccccEEEE
Confidence 345779999999999999875 699999999999999852211111111111111 11223356789999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG 167 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 167 (303)
.++|+|++|+.+--|++|+||=+.+ .+.....-+|.-+|.|+..+|++ ..+++|+.|..|++|-+.-+.|...+-+
T Consensus 515 ~~Spdgk~LaVsLLdnTVkVyflDt--lKFflsLYGHkLPV~smDIS~DS--klivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 515 SVSPDGKLLAVSLLDNTVKVYFLDT--LKFFLSLYGHKLPVLSMDISPDS--KLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred EEcCCCcEEEEEeccCeEEEEEecc--eeeeeeecccccceeEEeccCCc--CeEEeccCCCceEEeccccchhhhhhhc
Confidence 9999999999999999999997643 22233335789999999999986 5799999999999999999999999999
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCC
Q 048118 168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCA-ATEQSIKIWDLES 240 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~ 240 (303)
|.+.|.++.|-|....+.+++.|+.|+-||....+.++.+.. ...|++++.+|+|.++++ +.|.+|++|....
T Consensus 591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999999999999999999988888888754 578999999999866554 5689999998643
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7.2e-24 Score=168.31 Aligned_cols=241 Identities=18% Similarity=0.317 Sum_probs=176.9
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~ 85 (303)
+...++++|.+.|..|++.. +.++|+|.|.+|+.|.+... +... +. -.+.+.
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~------p~~t------------------il-g~s~~~ 151 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP------PLHT------------------IL-GKSVYL 151 (433)
T ss_pred hhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC------ccee------------------ee-cccccc
Confidence 45668999999999999874 46999999999999987531 1111 11 134556
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118 86 SVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT 164 (303)
Q Consensus 86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 164 (303)
.|+-+..+..++|||++ |.|||..-. +...+. -....|.+++|+|.- ...|++++.|++|.+||++..+++..
T Consensus 152 gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~sms---wG~Dti~svkfNpvE-TsILas~~sDrsIvLyD~R~~~Pl~K 225 (433)
T KOG0268|consen 152 GIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMS---WGADSISSVKFNPVE-TSILASCASDRSIVLYDLRQASPLKK 225 (433)
T ss_pred ccccccccccccccCce--eeecccccCCccceee---cCCCceeEEecCCCc-chheeeeccCCceEEEecccCCccce
Confidence 77777778899999975 899997432 222222 234568999999964 45788888999999999998877655
Q ss_pred EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc-eEEEe-cCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCC
Q 048118 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSL-DAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESK 241 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~ 241 (303)
+.- ...-+.++|+|++--|.+|++|..++.+|++.-+ ++... .+.+.|.++.|||.|+ +++++.|.+|+||..+.+
T Consensus 226 Vi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 226 VIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred eee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 432 2345679999987788999999999999998644 33332 4467899999999986 555667999999998765
Q ss_pred ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
.--..+- ...--.+.++.||.|.+++++||+|+.||+|.-
T Consensus 305 ~SRdiYh-------------------tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 305 HSRDIYH-------------------TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred cchhhhh-------------------HhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 3221110 001123567999999999999999999999964
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=9.4e-25 Score=186.95 Aligned_cols=236 Identities=26% Similarity=0.462 Sum_probs=193.1
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
+.-+|..+|.++.. ....+.+++|+.|..+-+|.+.+.... -.|.+|+++|-++.|
T Consensus 23 ~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i-----------------------~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAI-----------------------TSLTGHESPIESLTF 78 (825)
T ss_pred hhhhhhhhhceeee-eccceeeccCCCceeeccccccCCchh-----------------------heeeccCCcceeeec
Confidence 56678888888876 345678999999999999987542211 126789999999999
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC
Q 048118 90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT 169 (303)
Q Consensus 90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 169 (303)
++...++++|.++|+|++||+.. .+.+...-+|...+..+.|+|.+ .++++|+.|..+.+||.+..-+...+.+|.
T Consensus 79 ~~~E~LlaagsasgtiK~wDlee--Ak~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEE--AKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred CcchhhhcccccCCceeeeehhh--hhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCc
Confidence 99999999999999999999853 22222334677788999999986 367889999999999999888999999999
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeee
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~ 247 (303)
..+..++|+|+|++++++++|.+++|||+..|+.+..|. ....+.++.|+|...+++. +.|+.+++||+++-+++...
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence 999999999999999999999999999999999988887 5678999999999887765 56999999999988776544
Q ss_pred eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118 248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg 293 (303)
+.. ...+.+..|+|+++.+++|.++.
T Consensus 235 ~~~--------------------~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 235 KPE--------------------TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCc--------------------cCCceeeeecCCceeeecCchhh
Confidence 321 12346788999999998887654
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.8e-22 Score=164.85 Aligned_cols=237 Identities=22% Similarity=0.406 Sum_probs=177.8
Q ss_pred cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118 12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI 91 (303)
Q Consensus 12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~ 91 (303)
++|.+.|.+++.++++ .+||||+.|..|.||+..+.+.. ..+.+|.+.|.+++|-.
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~ehv-----------------------~~~~ghr~~V~~L~fr~ 254 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEHV-----------------------KVFKGHRGAVSSLAFRK 254 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccchh-----------------------hcccccccceeeeeeec
Confidence 4899999999999876 69999999999999998765421 23678999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC
Q 048118 92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171 (303)
Q Consensus 92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 171 (303)
....+++++.|.+|++|++.... .+....+|...|..+.-..- ...+-+|+.|+++++|++ .......+.++.+.
T Consensus 255 gt~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~r--eR~vtVGgrDrT~rlwKi-~eesqlifrg~~~s 329 (479)
T KOG0299|consen 255 GTSELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALSR--ERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGS 329 (479)
T ss_pred CccceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhcc--cceEEeccccceeEEEec-cccceeeeeCCCCC
Confidence 88999999999999999975322 22233467777887755432 234555669999999999 44445567888889
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-------------CCeEEEEEEcCCCeEEEEEc-CCcEEEEe
Q 048118 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-------------GAVIHALCFSPNRYWLCAAT-EQSIKIWD 237 (303)
Q Consensus 172 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~-~~~i~iwd 237 (303)
+.+++|-. ..+|++|+.+|.|.+|++.+.+++++... ..+|++++..|...++|+++ +|.|++|-
T Consensus 330 idcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 330 IDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred eeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 99999975 46889999999999999999888876521 12788999999888887765 89999999
Q ss_pred CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe-ecCCeE
Q 048118 238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG-YTDGVI 295 (303)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g-s~Dg~v 295 (303)
+..+.-- +.+ ...++ -..++++++|+++|+.+++| +...++
T Consensus 409 i~~g~r~--i~~--------------l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 409 IEDGLRA--INL--------------LYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred ecCCccc--cce--------------eeecc-cccEEEEEEEccCCCEEEEeccccccc
Confidence 8766210 100 01111 23478999999999966655 444443
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=3.9e-23 Score=176.36 Aligned_cols=195 Identities=21% Similarity=0.384 Sum_probs=163.8
Q ss_pred cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
..+|++|...|++++..- ...+++||-|.++++|.+.+... .+.+|+.+|+++
T Consensus 94 ~~~LkgH~snVC~ls~~~--~~~~iSgSWD~TakvW~~~~l~~-------------------------~l~gH~asVWAv 146 (745)
T KOG0301|consen 94 LYTLKGHKSNVCSLSIGE--DGTLISGSWDSTAKVWRIGELVY-------------------------SLQGHTASVWAV 146 (745)
T ss_pred hhhhhccccceeeeecCC--cCceEecccccceEEecchhhhc-------------------------ccCCcchheeee
Confidence 457999999999998653 34599999999999997753211 256899999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG 167 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 167 (303)
..-|++ .++||++|+.|++|.-. .. .....+|++.|+.+++-++. -|++++.||.|+.|++ +++++.++.+
T Consensus 147 ~~l~e~-~~vTgsaDKtIklWk~~-~~---l~tf~gHtD~VRgL~vl~~~---~flScsNDg~Ir~w~~-~ge~l~~~~g 217 (745)
T KOG0301|consen 147 ASLPEN-TYVTGSADKTIKLWKGG-TL---LKTFSGHTDCVRGLAVLDDS---HFLSCSNDGSIRLWDL-DGEVLLEMHG 217 (745)
T ss_pred eecCCC-cEEeccCcceeeeccCC-ch---hhhhccchhheeeeEEecCC---CeEeecCCceEEEEec-cCceeeeeec
Confidence 999988 78899999999999752 22 23345799999999998874 4899999999999999 7788888999
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCC
Q 048118 168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLES 240 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~ 240 (303)
|+..+.+++..+++..++++++|++++||+.. ++.+.+..+ ..+.++.+-++|.++++++||.|++|-.+.
T Consensus 218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999999988888899999999999999875 666666554 478888888999999999999999998763
No 109
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=163.56 Aligned_cols=203 Identities=21% Similarity=0.293 Sum_probs=156.6
Q ss_pred eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
+.+|..+|..+.|+||.+++++|+.|..+++||..+........ ..+...+.+++|.|++ ..+++|+.|+.+..||+
T Consensus 265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDL 341 (519)
T ss_pred eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEccCC--ceeEecCCCCcEEEecC
Confidence 45899999999999999999999999999999986543322211 2244568899999997 46999999999999998
Q ss_pred CCceeEEEEcCC-CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EEEcCCcEE
Q 048118 157 SNCKLRATLAGH-TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CAATEQSIK 234 (303)
Q Consensus 157 ~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~ 234 (303)
..+. ....++- ...|.++++.+||+++++.+.|..+++++.++......+....++++++.|.++.++ +.-.++.|+
T Consensus 342 Dgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 342 DGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred Ccch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence 6543 3333332 356899999999999999999999999999877666566667899999999998655 455789999
Q ss_pred EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC-CCCEEEEeecCCeEEEEecc
Q 048118 235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+||++..+++.++.-+ ....++-.-+|.- +..++++||+|+.|++|+.-
T Consensus 421 LWDl~e~~lv~kY~Gh------------------kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGH------------------KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred EeecchhhHHHHhhcc------------------cccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 9999987776554321 1122333344544 34799999999999999853
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7e-23 Score=173.69 Aligned_cols=210 Identities=26% Similarity=0.392 Sum_probs=169.3
Q ss_pred cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
...|+.|.+=|+.+...-. ++.|+++|.|-+|++|+...+. . .+.. .+..|++-|.|+
T Consensus 66 ~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~-~--~c~s------------------tir~H~DYVkcl 123 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDN-T--FCMS------------------TIRTHKDYVKCL 123 (735)
T ss_pred hhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCc-c--hhHh------------------hhhcccchheee
Confidence 5578889988888877644 4689999999999999987542 1 1222 234577778888
Q ss_pred EE-eeCCCEEEEEeCCCcEEEEecCCcee--------eee-ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118 88 AF-SIDNRQIVSASRDRTIKLWNTLGECK--------YTI-QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS 157 (303)
Q Consensus 88 ~~-~~~~~~l~t~~~d~~i~vw~~~~~~~--------~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~ 157 (303)
++ .++..++|+||.|+.|.+||+..... .+. ....++...|.+++.++.+ ..+++|+.++.+++||.+
T Consensus 124 a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~--t~ivsGgtek~lr~wDpr 201 (735)
T KOG0308|consen 124 AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG--TIIVSGGTEKDLRLWDPR 201 (735)
T ss_pred eecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc--eEEEecCcccceEEeccc
Confidence 88 77888999999999999999863311 111 1122567789999999986 579999999999999999
Q ss_pred CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCe-EEEEEcCCcEEE
Q 048118 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRY-WLCAATEQSIKI 235 (303)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~~~i~i 235 (303)
+++....+++|...|..+..+++|..++++|.||+|++||+...+++.++. +...|.++..+|+-. +.+++.||.|+.
T Consensus 202 t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 202 TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 999999999999999999999999999999999999999999999998874 345699998888754 445667999999
Q ss_pred EeCCCC
Q 048118 236 WDLESK 241 (303)
Q Consensus 236 wd~~~~ 241 (303)
=|+++.
T Consensus 282 Tdl~n~ 287 (735)
T KOG0308|consen 282 TDLRNP 287 (735)
T ss_pred cccCCc
Confidence 999875
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.9e-22 Score=168.60 Aligned_cols=266 Identities=16% Similarity=0.304 Sum_probs=186.9
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc------------
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ------------ 76 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 76 (303)
..++||++.|.+|+..|. +..|++||.||++++|.+..+- +....+ ....|.+++|.|...
T Consensus 394 lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgR-----cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGR-----CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecce-----EEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 348999999999999985 5799999999999999987532 222211 111233333333210
Q ss_pred --------------------------------------------------eecccCCEEEEEEeeCCCEEEEEeCC---C
Q 048118 77 --------------------------------------------------FVGHTKDVLSVAFSIDNRQIVSASRD---R 103 (303)
Q Consensus 77 --------------------------------------------------~~~h~~~i~~i~~~~~~~~l~t~~~d---~ 103 (303)
.+.|...|..+.|+..|.||+|...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 12567789999999999999998775 4
Q ss_pred cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCE
Q 048118 104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183 (303)
Q Consensus 104 ~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 183 (303)
.|.|.++..... ...+....+.+.++.|+|.. .+++.+ ....|++||+..+.++.++......|..++++|.|..
T Consensus 547 ~VliHQLSK~~s--Q~PF~kskG~vq~v~FHPs~--p~lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 547 SVLIHQLSKRKS--QSPFRKSKGLVQRVKFHPSK--PYLFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred eEEEEecccccc--cCchhhcCCceeEEEecCCC--ceEEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence 677888743211 12222344568999999975 455544 5679999999888777777666778999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCc-eEEEe-cCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCC-CCceeeeeeecccccccccc
Q 048118 184 CASGGKDGVILLWDLAEGK-RLYSL-DAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLE-SKSIVEDLKVDLKTEAEKSE 259 (303)
Q Consensus 184 l~~~~~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 259 (303)
|+.++.|+.+..+|+.-+. +.+++ .+...+++++|++.-.++|+++ ||.+.+|--. ...++.+ +
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn------------p 689 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN------------P 689 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC------------C
Confidence 9999999999999997543 33333 2456789999999888888776 5888887521 1111100 0
Q ss_pred Cccceeeccccc----eeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118 260 ATTATTTIKKKN----IYCTSLNWSVDGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 260 ~~~~~~~~~~~~----~~~~~~~~sp~~~~l~~gs~Dg~v~~w 298 (303)
.-.+...+++|. ..+.+..|+|...+|++++.||+|++|
T Consensus 690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 011122233333 347788899999999999999999998
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=159.71 Aligned_cols=214 Identities=24% Similarity=0.323 Sum_probs=165.8
Q ss_pred ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC--
Q 048118 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-- 157 (303)
Q Consensus 80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-- 157 (303)
-.++|.+++-+|.|.+++.|+..+.|.+|.+.......+. .+|-..|+|+.|+-++ ..+++|+.||.|.+|++-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~dg--s~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQSITCLKFSDDG--SHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH--HhhccceeEEEEeCCC--cEEEecCCCccEEEEEEEee
Confidence 3467999999999999998889999999998765443332 5677889999999886 579999999999999762
Q ss_pred -------CceeEEEEcCCCCCeeEEEECCCC--CEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EE
Q 048118 158 -------NCKLRATLAGHTGYVNTVAVSPDG--SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CA 227 (303)
Q Consensus 158 -------~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~ 227 (303)
+-++...+..|.-+|+++...+.| ..++++|.|.++++||+..+..+.++..+..+.+++.+|.+..+ ++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG 235 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence 235678889999999999987753 58999999999999999999999999888999999999987655 55
Q ss_pred EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccce--eEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 228 ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNI--YCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 228 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+.+|.|++.++.+-.--. ..... .......+....+.+|.. .+++++.+-||.+|++|+.||.|++||+.
T Consensus 236 t~~G~I~~~~~~~~~~~~---~~v~~-k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQS---AGVNQ-KGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred CCcceEEeeehhcCCccc---ccccc-cccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 679999998875432100 00000 011112222333444444 78999999999999999999999999985
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.2e-22 Score=158.46 Aligned_cols=205 Identities=22% Similarity=0.352 Sum_probs=158.0
Q ss_pred eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc-----ee-----------eeeecCCCCccceEEEEEcCCCCCC
Q 048118 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-----CK-----------YTIQEGDAHTEWVSCVRFSPNTLQP 140 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~-----~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~ 140 (303)
+..|+++..+.+|++||.+++||+.|.+|++.|.... .+ ..+...-.|.+.|+++.|+|.. .
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre--~ 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE--T 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh--h
Confidence 4679999999999999999999999999999996410 00 0111223477889999999974 5
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEc--CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeEE
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLA--GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVIH 214 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~ 214 (303)
.+++|+.|++|++||+.+....+.++ ....+|.++.|+|.|.+|++|..-.++++||+.+-|+..... ....|.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 79999999999999997543322221 134689999999999999999999999999999988765543 346799
Q ss_pred EEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118 215 ALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 215 ~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg 293 (303)
++.+++.+. ++.++.||.|++||--+++.+..+... . ....+.+..|.-+++++++.+.|.
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-----------------H-~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-----------------H-GGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh-----------------c-CCceeeeEEEccCCeEEeecCCcc
Confidence 999999975 556667999999996655544433210 1 123356778999999999999999
Q ss_pred eEEEEecc
Q 048118 294 VIRVWGIG 301 (303)
Q Consensus 294 ~v~~w~~~ 301 (303)
.|++|.++
T Consensus 328 ~vkLWEi~ 335 (430)
T KOG0640|consen 328 TVKLWEIS 335 (430)
T ss_pred eeeeeeec
Confidence 99999885
No 114
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=5.9e-22 Score=159.61 Aligned_cols=182 Identities=24% Similarity=0.315 Sum_probs=142.2
Q ss_pred eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV 84 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i 84 (303)
..+....+.| .+|+.+.|.+...+.++||+.|..|++|.+...+...+. ..|..+ ..+..|...|
T Consensus 4 ~~~ei~wH~~-~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------~~V~y~-----s~Ls~H~~aV 68 (434)
T KOG1009|consen 4 YPIEISWHDH-EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------MKVEYL-----SSLSRHTRAV 68 (434)
T ss_pred eeeEEEecCC-CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------eeEEEe-----ecccCCccee
Confidence 3444456655 589999999877779999999999999998765432211 111111 1355799999
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEecC--------C-----ceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118 85 LSVAFSIDNRQIVSASRDRTIKLWNTL--------G-----ECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~--------~-----~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~ 150 (303)
+.+.|+|+|+++++|+.++.|.+|... . .+.+ .......|...|..++|+|++ ..+++++.|.+
T Consensus 69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--~~l~s~s~dns 146 (434)
T KOG1009|consen 69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--NFLVSGSVDNS 146 (434)
T ss_pred EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--ceeeeeeccce
Confidence 999999999999999999999999754 1 1112 122234577788999999986 67999999999
Q ss_pred EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Q 048118 151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203 (303)
Q Consensus 151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 203 (303)
+++||+..++....+..|...+..++|.|.++++++-+.|+..+++.+...+.
T Consensus 147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred EEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 99999999999999999999999999999999999999998777777655443
No 115
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=3.7e-21 Score=147.31 Aligned_cols=201 Identities=19% Similarity=0.313 Sum_probs=161.3
Q ss_pred eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
+.||+-+++.+.++.+|.+|.+|+.|....||-....+.. -..++|+..|.|+..+.+. ..+++|+.|.++++||.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~GHtGavW~~Did~~s--~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLWDV 81 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeecCCCceEEEEEecCCc--ceeeeccccceeEEEEc
Confidence 4689999999999999999999999999999975333332 2336899999999998875 47999999999999999
Q ss_pred CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-----CCeEEEEeCC-------CCceEEEec-CCCeEEEEEEcCCCe
Q 048118 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-----DGVILLWDLA-------EGKRLYSLD-AGAVIHALCFSPNRY 223 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~iwd~~-------~~~~~~~~~-~~~~v~~~~~s~~~~ 223 (303)
.+++.+.+++- ..+|..+.|+++|++++.... .+.|.++|++ ..+++..+. ..+.+..+-|.|-+.
T Consensus 82 ~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 82 ETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 99999888774 568999999999998876654 3689999998 334455554 357788899999875
Q ss_pred EE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 224 WL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 224 ~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.+ ++..+|+|..||+++++.+-+. .+.|...++++.++||..++++||.|.+.++||..
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s-------------------~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDS-------------------DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeec-------------------hhhhccccccccccCCcceEEecccCccceeeecc
Confidence 55 5557999999999998554321 12234457889999999999999999999999974
No 116
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3.4e-23 Score=162.62 Aligned_cols=221 Identities=22% Similarity=0.317 Sum_probs=165.7
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc-e----eeeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-C----KYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK 152 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~----~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~ 152 (303)
+.++-+-|..|+|+|.++++|+.||.|.+|+.... . +++.+ ...-+..+|.|+.|+.+. ..+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs--EMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS--EMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH--HHhhccCcCCcEE
Confidence 45566789999999999999999999999996422 1 11111 112356789999999986 4689999999999
Q ss_pred EEECCCceeEEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCe-EEEEEc
Q 048118 153 VWNLSNCKLRATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRY-WLCAAT 229 (303)
Q Consensus 153 iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~-~l~~~~ 229 (303)
+|.+.++++...+. .|...|+++.|+.|+..+++++.|.++++-.+++|+++..+.. .+.|+...|.++|. ++.+++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 99999999988886 7999999999999999999999999999999999999888854 57899999999985 556778
Q ss_pred CCcEEEEeCCCCceeeeeeecccc----------c-ccc-----ccCccceeecc-----------ccceeEEEEEEcCC
Q 048118 230 EQSIKIWDLESKSIVEDLKVDLKT----------E-AEK-----SEATTATTTIK-----------KKNIYCTSLNWSVD 282 (303)
Q Consensus 230 ~~~i~iwd~~~~~~~~~~~~~~~~----------~-~~~-----~~~~~~~~~~~-----------~~~~~~~~~~~sp~ 282 (303)
||.|++|+.++.+.+..++..... . .+. ...+.....++ .......+...||.
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCC
Confidence 999999999887666554321100 0 000 00000000011 01111245668999
Q ss_pred CCEEEEeecCCeEEEEecc
Q 048118 283 GSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 283 ~~~l~~gs~Dg~v~~w~~~ 301 (303)
|.++.+.+.|+.+..|.+.
T Consensus 449 GewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred CcEEEEEccCcEEEEEEee
Confidence 9999999999999998763
No 117
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=169.57 Aligned_cols=269 Identities=22% Similarity=0.322 Sum_probs=197.7
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEe--------------
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVL-------------- 71 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------- 71 (303)
+++..++.-.+.|+.++|..++...+|+|+..|.+.+||+.+..... .....|...+....+
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~----v~~nah~~sv~~~~fl~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN----VTRNAHYGSVTGATFLPGEPVLVTAGADN 310 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee----eeeccccCCcccceecCCCceEeeccCCC
Confidence 34556664458999999999888999999999999999997542211 111122111111111
Q ss_pred --------CCCC--c----eecccCCEEEEEEe-eCCCEEEEEeCCCcEEEEecCCc-------e---------e--e--
Q 048118 72 --------SSDG--Q----FVGHTKDVLSVAFS-IDNRQIVSASRDRTIKLWNTLGE-------C---------K--Y-- 116 (303)
Q Consensus 72 --------~~~~--~----~~~h~~~i~~i~~~-~~~~~l~t~~~d~~i~vw~~~~~-------~---------~--~-- 116 (303)
+++| + -.||..+..+|.|. .+|..+.+++.|++.+.+.+..+ . . .
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 1122 1 13899999999998 67888999999998887753100 0 0 0
Q ss_pred -------------------------eee----------c--------------CCCCccceEEEEEcCCCCCCEEEEEeC
Q 048118 117 -------------------------TIQ----------E--------------GDAHTEWVSCVRFSPNTLQPTIVSASW 147 (303)
Q Consensus 117 -------------------------~~~----------~--------------~~~~~~~i~~~~~~~~~~~~~~~~~~~ 147 (303)
... . .+.....+.+++.++.+ +..+.|..
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG--NF~~IG~S 468 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG--NFVFIGYS 468 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC--ceEEEecc
Confidence 000 0 00011235566666654 56677889
Q ss_pred CCcEEEEECCCceeEEEE---cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeE
Q 048118 148 DRTVKVWNLSNCKLRATL---AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW 224 (303)
Q Consensus 148 dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~ 224 (303)
.|.|-+|+++.+-.+..+ ..|.++|++++....++.+++++.+|.+++||+.++..+..+..+..+..+.++....+
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL 548 (910)
T ss_pred CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh
Confidence 999999999999888888 57999999999999899999999999999999999888888888888888877776544
Q ss_pred E-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 225 L-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 225 l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
+ ++..+-.|.++|..+.++++++ .+|...+++++|||||++|++++.|++||+||+
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f--------------------~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREF--------------------WGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHh--------------------hccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 4 5567789999999988876654 345667899999999999999999999999998
No 118
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.7e-21 Score=166.50 Aligned_cols=281 Identities=22% Similarity=0.375 Sum_probs=204.0
Q ss_pred cceeecccccccccceeeeecCCCC--CcEEEEecCCCcEEEEEcccCc--c-------------c-cceee--------
Q 048118 3 EGLVLKGTMRAHTDMVTAIATPIDN--SDMIVTASRDKSIIVWHLTKEE--K-------------T-YGVAR-------- 56 (303)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~v~~~~~~--~~~~~t~s~d~~i~iw~~~~~~--~-------------~-~~~~~-------- 56 (303)
+.+..+..++||.|-|..++|...+ .-+++++|.|..||||++.... . . .....
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 4566778899999999999998743 3589999999999999985321 0 0 00111
Q ss_pred --eeecCCCcceEEEEeCCCCc-e--------------------------------------------------------
Q 048118 57 --RRLTGHSHFVQDVVLSSDGQ-F-------------------------------------------------------- 77 (303)
Q Consensus 57 --~~~~~~~~~i~~~~~~~~~~-~-------------------------------------------------------- 77 (303)
..+.+|.++|+.+.|.|++. +
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 22348999999999887651 0
Q ss_pred -------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee--eeeecCCCCccceEEEEEcCC
Q 048118 78 -------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPN 136 (303)
Q Consensus 78 -------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 136 (303)
-||.+.|..++|+|.|+++++.|.|.+=|++-..+... -.+..-..|-....|++|-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 18899999999999999999999999999986432211 112222245556889988774
Q ss_pred CCCCEEEEEeCCCcEEEEECC-------------------------------------------Ccee------------
Q 048118 137 TLQPTIVSASWDRTVKVWNLS-------------------------------------------NCKL------------ 161 (303)
Q Consensus 137 ~~~~~~~~~~~dg~i~iwd~~-------------------------------------------~~~~------------ 161 (303)
. ..+++|..+..+|+|+.- ++..
T Consensus 419 ~--~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 419 D--LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred C--ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 3 468899999999998631 0000
Q ss_pred ---------------------EEEEcCCCCCeeEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceEEEec-CCCeEE
Q 048118 162 ---------------------RATLAGHTGYVNTVAVSPDGSLCASGGKDG-----VILLWDLAEGKRLYSLD-AGAVIH 214 (303)
Q Consensus 162 ---------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~-~~~~v~ 214 (303)
.+++.+|.-.|++++.+|+++++|+++... .|++|+..+-..++.+. +...|.
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT 576 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence 011347888899999999999999987653 68899987655555443 456899
Q ss_pred EEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118 215 ALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 215 ~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg 293 (303)
.++||||+. +|+++-|....+|....... ...+ ....+.|..-+++.+|+|++++++|+|.|.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~e~~---------------fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-DEFR---------------FACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccc-hhhh---------------hccccccceEEEEcccCcccceeEEecCCc
Confidence 999999985 55677899999999743211 1111 112456777789999999999999999999
Q ss_pred eEEEEecc
Q 048118 294 VIRVWGIG 301 (303)
Q Consensus 294 ~v~~w~~~ 301 (303)
+|++|.+.
T Consensus 641 ~VkVW~~~ 648 (764)
T KOG1063|consen 641 KVKVWEEP 648 (764)
T ss_pred eEEEEecc
Confidence 99999764
No 119
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=1.1e-21 Score=175.32 Aligned_cols=223 Identities=24% Similarity=0.407 Sum_probs=167.9
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceee--eeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVAR--RRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
..+..|.+.|+|+.|+|++ .+||+||.|+.|.+|+.... ....... ........+ .+ -..+.+|...|..
T Consensus 63 ~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~w-k~-----~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESW-KV-----VSILRGHDSDVLD 134 (942)
T ss_pred eeeccccCceeEEEECCCC-CeEeeccCcceEEEeeeccc-CCccccccccccccccee-eE-----EEEEecCCCccce
Confidence 4578899999999999875 69999999999999998741 1000110 001111111 01 1146789999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee-----
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL----- 161 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~----- 161 (303)
++|+|++.++++++.|++|.+|+..+- ......+.|...|..+.|.|-+ .+|++-+.|++|++|+..+...
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccc--eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeec
Confidence 999999999999999999999997543 2233446788889999999976 5899999999999998543211
Q ss_pred -----------------------------------------------EEEEcCCCCCeeEEEECCC-----CC-------
Q 048118 162 -----------------------------------------------RATLAGHTGYVNTVAVSPD-----GS------- 182 (303)
Q Consensus 162 -----------------------------------------------~~~~~~~~~~i~~~~~~~~-----~~------- 182 (303)
-..+.+|..++.+++|+|. .+
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 1125689999999999872 11
Q ss_pred -----EEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCce
Q 048118 183 -----LCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSI 243 (303)
Q Consensus 183 -----~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~ 243 (303)
.+|+|+.|++|.||.....+++..+. ....|.+++|+|||. +++++.||+|.++..+..++
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 56889999999999987777766553 357899999999995 66778899999999876543
No 120
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=159.78 Aligned_cols=257 Identities=20% Similarity=0.267 Sum_probs=180.1
Q ss_pred cccccccceeeeecCCCCC-cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNS-DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~-~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~ 88 (303)
..+-+...|++++|+|... .++|+|..-|+|-+||+...++.... +. -+..|.++|.+|.
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~-----------v~--------~f~~hs~~Vs~l~ 241 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG-----------VY--------LFTPHSGPVSGLK 241 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc-----------eE--------EeccCCccccceE
Confidence 3566778999999999655 78999999999999999522221100 00 2457899999999
Q ss_pred EeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee-EEEEc
Q 048118 89 FSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL-RATLA 166 (303)
Q Consensus 89 ~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~-~~~~~ 166 (303)
|+|.. ..+++.+.||+|++-|+.+.....+...+.....+..+.|+.+. ..++.+..=|...+||++.... ...+.
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~--~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES--RSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC--ccEEEeecccceEEEEeecCCccchhhh
Confidence 99964 68999999999999998654322222222234456667776653 3456666667999999987654 45566
Q ss_pred CCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCc-----eEEEecCCCeEEEEEEcCC-CeEEEEEcCCcEEEEeCC
Q 048118 167 GHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGK-----RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLE 239 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~ 239 (303)
-|...|.+++++|... +||+++.|++++|||++.-. .+.+..+.-.|.+..|||. +.+++.+.|..|+|||..
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 7888999999999665 68999999999999997522 2566677889999999997 477788899999999974
Q ss_pred C--CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 240 S--KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 240 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
- ........+. +. .....+ ....-..|.|+..++++|-.-..|-++|-
T Consensus 400 ~~sa~~~p~~~I~--Hn---~~t~Rw--------lT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 400 CISAKDEPLGTIP--HN---NRTGRW--------LTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred cccccCCccceee--cc---Cccccc--------ccchhheeCCCccEEEEeccCcceeEEcC
Confidence 0 0000000000 00 000001 11123569999999999988888888864
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-21 Score=153.87 Aligned_cols=211 Identities=21% Similarity=0.336 Sum_probs=153.3
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee---eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY---TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK 152 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~ 152 (303)
.+++|.++|++++|+.+|++|+|++.|+.|++|++..-... .+.. ...-+-.+.+.|.|+.. ..+++.-....++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~-s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCK-SVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcc-eEEEEEccCCEEE
Confidence 46799999999999999999999999999999997532111 1110 01111246788999863 4666777778899
Q ss_pred EEECCCce---eEE---------EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-CeEEEEEEc
Q 048118 153 VWNLSNCK---LRA---------TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFS 219 (303)
Q Consensus 153 iwd~~~~~---~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s 219 (303)
+|.+...+ ... -.+.|.-.+-.+.....+.+|++++.|..|.+|+++ |+.+..++.. ..-+..+.|
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 99764321 110 012345566677777788999999999999999998 8888888653 455678899
Q ss_pred CCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118 220 PNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 220 ~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w 298 (303)
|+|.+++++ ..-.+++|..--++-- . -........+++|...+..++|||+...+++.|.||++|+|
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG---~---------fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDG---T---------FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCc---c---------hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 999887665 4678999986322110 0 01112235678889999999999999999999999999999
Q ss_pred ecc
Q 048118 299 GIG 301 (303)
Q Consensus 299 ~~~ 301 (303)
|++
T Consensus 306 dtd 308 (420)
T KOG2096|consen 306 DTD 308 (420)
T ss_pred ecc
Confidence 984
No 122
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=2.3e-20 Score=154.43 Aligned_cols=264 Identities=19% Similarity=0.236 Sum_probs=189.4
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeec-CCCcceEEEEeCCCCc--------
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT-GHSHFVQDVVLSSDGQ-------- 76 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-------- 76 (303)
+..+..+..++.|....|+|..+++++|++. +.+.+|+...+.... ....+. .....|.++.+.+++.
T Consensus 191 ~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k--~~~~fek~ekk~Vl~v~F~engdviTgDS~G 267 (626)
T KOG2106|consen 191 AKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVK--RQGIFEKREKKFVLCVTFLENGDVITGDSGG 267 (626)
T ss_pred hccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEE--EeeccccccceEEEEEEEcCCCCEEeecCCc
Confidence 3455667777889999999999999999988 689999887543211 111111 1125667777766553
Q ss_pred ---------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE
Q 048118 77 ---------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT 141 (303)
Q Consensus 77 ---------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 141 (303)
..+|.+.|.+++...+|.++ +|+.|..|..||-.- .+............|+.+.-.. ..
T Consensus 268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~----~d 341 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGK----GD 341 (626)
T ss_pred eEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc-cccccccCchhcCCeeEEecCC----Cc
Confidence 23899999999999998765 499999999998321 1111111112234566664332 12
Q ss_pred EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCC
Q 048118 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN 221 (303)
Q Consensus 142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~ 221 (303)
++.|.....|..=.++++- .....+|....+.++.+|+.+++++++.|+.+++|+ ..+.+.+.....++.++.|+|.
T Consensus 342 i~vGTtrN~iL~Gt~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhps 418 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPS 418 (626)
T ss_pred EEEeeccceEEEeeecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCc
Confidence 6666666666544444332 334567888999999999999999999999999999 6677777777889999999999
Q ss_pred CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 222 RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 222 ~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+.+++....|...+.|.++..++..-. .+..++.++|+|+|.+||+|+.|+.|.+|.++
T Consensus 419 g~va~Gt~~G~w~V~d~e~~~lv~~~~---------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 419 GVVAVGTATGRWFVLDTETQDLVTIHT---------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred ceEEEeeccceEEEEecccceeEEEEe---------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 955555678999999999876654211 13345779999999999999999999999875
Q ss_pred c
Q 048118 302 R 302 (303)
Q Consensus 302 ~ 302 (303)
+
T Consensus 478 ~ 478 (626)
T KOG2106|consen 478 A 478 (626)
T ss_pred C
Confidence 3
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.9e-22 Score=172.25 Aligned_cols=248 Identities=22% Similarity=0.355 Sum_probs=177.7
Q ss_pred ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee-CCCE
Q 048118 17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI-DNRQ 95 (303)
Q Consensus 17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~ 95 (303)
...+|+.+++. ..++-++. ..++++.+.+........... ..... -.-....+.|+. ...+
T Consensus 41 ~~nAIs~nr~~-~qiv~AGr-s~lklyai~~~~~~~~~~~~~-k~kqn---------------~~~S~~DVkW~~~~~Nl 102 (839)
T KOG0269|consen 41 KANAISVNRDI-NQIVVAGR-SLLKLYAINPNDFSEKCNHRF-KTKQN---------------KFYSAADVKWGQLYSNL 102 (839)
T ss_pred ccceEeecCCc-ceeEEecc-cceeeEeeCcccCCcceeeec-ccccc---------------eeeehhhcccccchhhh
Confidence 35667777664 45555555 488999887644332222110 00000 001234566764 3568
Q ss_pred EEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118 96 IVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174 (303)
Q Consensus 96 l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 174 (303)
|||++..|.|.+||+... ....+.....|+..+.++.|++.. ..++++|+.||.|++||++..+...++.+..+.|..
T Consensus 103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred heeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence 999999999999998542 112223445688889999999864 468999999999999999999888889888899999
Q ss_pred EEECC-CCCEEEEEeCCCeEEEEeCCCCc-eEEEe-cCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeec
Q 048118 175 VAVSP-DGSLCASGGKDGVILLWDLAEGK-RLYSL-DAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVD 250 (303)
Q Consensus 175 ~~~~~-~~~~l~~~~~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~ 250 (303)
++|+| .+.+|+++.+.|.+++||++... +..++ .+.++|.++.|+|++.|||++. |+.|+|||+.+.+......+.
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn 261 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN 261 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe
Confidence 99999 56789999999999999998643 33333 3568999999999999988765 899999999766544333221
Q ss_pred cccccccccCccceeeccccceeEEEEEEcCCCC-EEEEee--cCCeEEEEeccc
Q 048118 251 LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGY--TDGVIRVWGIGR 302 (303)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs--~Dg~v~~w~~~~ 302 (303)
....+..+.|-|... +||+++ .|-.|+|||+-|
T Consensus 262 -------------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 262 -------------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred -------------------ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 012346789999876 566665 488999999965
No 124
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=3e-22 Score=159.91 Aligned_cols=201 Identities=21% Similarity=0.347 Sum_probs=154.0
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~ 88 (303)
.++++|...=+++.|+|-....++||-.-+.|.+|....+. ..+. ...+.+|+..|-.++
T Consensus 205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~--W~vd------------------~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS--WKVD------------------QRPFTGHTKSVEDLQ 264 (440)
T ss_pred EEecccCccceeeecccccccccccCccccceEeeeeccCc--eeec------------------Cccccccccchhhhc
Confidence 35788999999999999666678998888899999876521 1111 123567999999999
Q ss_pred EeeC-CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc---eeEEE
Q 048118 89 FSID-NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC---KLRAT 164 (303)
Q Consensus 89 ~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~---~~~~~ 164 (303)
|+|. ...|++|+-|++|+|||++...+......++|...|+.+.|+..- +.|++|+.||+++|||++.. +++.+
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCccee
Confidence 9996 468999999999999999776554444447788899999998753 58999999999999999764 56788
Q ss_pred EcCCCCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCc-------------------eEEEecCCCeEEEEEEcCC--C
Q 048118 165 LAGHTGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGK-------------------RLYSLDAGAVIHALCFSPN--R 222 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~-------------------~~~~~~~~~~v~~~~~s~~--~ 222 (303)
++.|..+|+++.|+|. ...|++++.|.+|.+||+.-.. .++.......+..+.|++. |
T Consensus 343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 9999999999999994 4578889999999999984321 1111123345666788876 5
Q ss_pred eEEEEEcCC
Q 048118 223 YWLCAATEQ 231 (303)
Q Consensus 223 ~~l~~~~~~ 231 (303)
.++.++.+|
T Consensus 423 ~lvsTa~dG 431 (440)
T KOG0302|consen 423 LLVSTAIDG 431 (440)
T ss_pred eEEEecccc
Confidence 666666665
No 125
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.2e-21 Score=163.72 Aligned_cols=229 Identities=22% Similarity=0.414 Sum_probs=175.2
Q ss_pred eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEE
Q 048118 20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSA 99 (303)
Q Consensus 20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~ 99 (303)
.+.|+. .+.++.| -+..+.+|+..... +..+. ..+...|+++.|+++|.+|+.|
T Consensus 182 lldWss--~n~laVa-lg~~vylW~~~s~~----------------v~~l~-------~~~~~~vtSv~ws~~G~~LavG 235 (484)
T KOG0305|consen 182 LLDWSS--ANVLAVA-LGQSVYLWSASSGS----------------VTELC-------SFGEELVTSVKWSPDGSHLAVG 235 (484)
T ss_pred Hhhccc--CCeEEEE-ecceEEEEecCCCc----------------eEEeE-------ecCCCceEEEEECCCCCEEEEe
Confidence 356763 3445544 44689999865432 11110 1126789999999999999999
Q ss_pred eCCCcEEEEecCCceeeeeecCCC-CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE-EcCCCCCeeEEEE
Q 048118 100 SRDRTIKLWNTLGECKYTIQEGDA-HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LAGHTGYVNTVAV 177 (303)
Q Consensus 100 ~~d~~i~vw~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~ 177 (303)
..+|.|.|||..... .+..... |...|.+++|+. ..+.+|+.++.|..+|++..+.... +.+|...|..++|
T Consensus 236 ~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred ecCCeEEEEehhhcc--ccccccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 999999999974321 1222233 788899999984 3689999999999999987664444 8889999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCC-CeEEEEE---cCCcEEEEeCCCCceeeeeeeccc
Q 048118 178 SPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPN-RYWLCAA---TEQSIKIWDLESKSIVEDLKVDLK 252 (303)
Q Consensus 178 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~-~~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~ 252 (303)
++++++||+|+.|+.+.|||....+++..+ .+...|.+++|+|- ..+||++ .|+.|++||..+++.+..+.
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---- 385 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD---- 385 (484)
T ss_pred CCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----
Confidence 999999999999999999999776666665 56789999999996 4566654 48899999999888776443
Q ss_pred cccccccCccceeeccccceeEEEEEEcCCCCEEE--EeecCCeEEEEecc
Q 048118 253 TEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLF--SGYTDGVIRVWGIG 301 (303)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~--~gs~Dg~v~~w~~~ 301 (303)
...+|.+|.|++..+-|+ .|..++.|.||+..
T Consensus 386 -----------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 386 -----------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred -----------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 245678899999987665 45778899999863
No 126
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=5.7e-21 Score=152.02 Aligned_cols=169 Identities=17% Similarity=0.297 Sum_probs=141.4
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
.|..|+++|.+++.+|+..+++||+.|....||+...... ......|...|.++.|+.++ .++++|+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~Fshdg--tlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDG--TLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCc--eEEEecCCCccEEEEE
Confidence 4678999999999999999999999999999999865442 22234688899999999986 5899999999999999
Q ss_pred CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEE-EEEcCCcE
Q 048118 156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWL-CAATEQSI 233 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~i 233 (303)
..++.....+...-+.+.=+.|+|.+..|+.|+.||.+-+|.+.++...+.+. +..++.+=.|.|+|+.+ ++..||.|
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 99988877776545667778999999999999999999999998865555554 45678888899998655 45579999
Q ss_pred EEEeCCCCceeeeee
Q 048118 234 KIWDLESKSIVEDLK 248 (303)
Q Consensus 234 ~iwd~~~~~~~~~~~ 248 (303)
++||.++++.+..+.
T Consensus 215 ~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEecCCCceeEEec
Confidence 999999998877665
No 127
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5e-21 Score=149.82 Aligned_cols=238 Identities=18% Similarity=0.310 Sum_probs=172.3
Q ss_pred eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118 18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV 97 (303)
Q Consensus 18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~ 97 (303)
-+++.|++- +.++|.|..||.+-|||+..... ..-+.+|..+|.+++|+++|+.|+
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~i-----------------------ar~lsaH~~pi~sl~WS~dgr~Ll 81 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRI-----------------------ARMLSAHVRPITSLCWSRDGRKLL 81 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccch-----------------------hhhhhccccceeEEEecCCCCEee
Confidence 467889976 47999999999999999975321 113457999999999999999999
Q ss_pred EEeCCCcEEEEecCCc-eeeeee---------cCCC-Cccce--------EEEE-------------------------E
Q 048118 98 SASRDRTIKLWNTLGE-CKYTIQ---------EGDA-HTEWV--------SCVR-------------------------F 133 (303)
Q Consensus 98 t~~~d~~i~vw~~~~~-~~~~~~---------~~~~-~~~~i--------~~~~-------------------------~ 133 (303)
|++.|..|++||+... +...+. .... .+..| .-+. |
T Consensus 82 tsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~f 161 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVF 161 (405)
T ss_pred eecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccc
Confidence 9999999999997432 111110 0000 00000 0111 2
Q ss_pred cCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC-CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-------c--e
Q 048118 134 SPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT-GYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-------K--R 203 (303)
Q Consensus 134 ~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~--~ 203 (303)
++. ..++++|...|.+.++|..+.+++..++-.. ..|..+.++-.|+.|+.-+.|+.||.|+++.- + +
T Consensus 162 dr~--g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~ 239 (405)
T KOG1273|consen 162 DRR--GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEP 239 (405)
T ss_pred cCC--CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcCh
Confidence 222 2478999999999999999999888776555 67889999999999999999999999998521 1 1
Q ss_pred EEEe---cCCCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEE
Q 048118 204 LYSL---DAGAVIHALCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLN 278 (303)
Q Consensus 204 ~~~~---~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (303)
.+.+ .......+++||.+|.++++++ ...+++|....|.+++.+.-. ++....++.
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-------------------kgE~l~DV~ 300 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-------------------KGEELLDVN 300 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC-------------------chhheeecc
Confidence 1111 1234567889999998887765 567999999999988766421 112235688
Q ss_pred EcCCCCEEEEeecCCeEEEEecc
Q 048118 279 WSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 279 ~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
|+|-.+.+++- ..|.|++|...
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cccceeeeeec-cCCceEEEEee
Confidence 99998888877 78999999753
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=5.5e-21 Score=161.98 Aligned_cols=261 Identities=18% Similarity=0.275 Sum_probs=173.5
Q ss_pred CCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCc
Q 048118 25 IDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRT 104 (303)
Q Consensus 25 ~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~ 104 (303)
|..+.+|+.+-.||.|.++|..+..-.. ..+.+ ..+.+|...|..+.|.|....|++.+.|.+
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~--ee~~l---------------k~~~aH~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRL--EERQL---------------KKPLAHKNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcch--hhhhh---------------cccccccceeEeeccCCCceeEEEccCCce
Confidence 3566889999999999999875321000 00000 135679999999999997778999999999
Q ss_pred EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--------------------e---
Q 048118 105 IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--------------------L--- 161 (303)
Q Consensus 105 i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--------------------~--- 161 (303)
+++||+............+|...+.+++|.|.. ...|++|+.||.|.+||++-.. .
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 999998655443333345788889999999975 4689999999999999975221 0
Q ss_pred ----EEEEcCCCCCeeE---EEECCCCCEEEEEeC-CCeEEEEeCCCCceEEEec--------C----CCeEEEEEEcCC
Q 048118 162 ----RATLAGHTGYVNT---VAVSPDGSLCASGGK-DGVILLWDLAEGKRLYSLD--------A----GAVIHALCFSPN 221 (303)
Q Consensus 162 ----~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~--------~----~~~v~~~~~s~~ 221 (303)
......+...|.+ +-+..|...||+++. |+.|+|||++..+..+... . ...+.++.....
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 0111223333444 445567788999887 9999999998765543321 1 112445555555
Q ss_pred C-eEEEEEcCCcEEEEeCCCCce----------eeeeeeccccc-----------------cccccCccceeecccccee
Q 048118 222 R-YWLCAATEQSIKIWDLESKSI----------VEDLKVDLKTE-----------------AEKSEATTATTTIKKKNIY 273 (303)
Q Consensus 222 ~-~~l~~~~~~~i~iwd~~~~~~----------~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 273 (303)
| .++|.++|++|++||+..-.. ...+.+..... ........+...+.+|...
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e 362 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE 362 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE
Confidence 5 566888999999999864321 11111110000 0001111223345677888
Q ss_pred EEEEEEcCCCC-EEEEeecCCeEEEEecccC
Q 048118 274 CTSLNWSVDGS-TLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 274 ~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~~~ 303 (303)
++.++|.|... -+++++.|-++++|++.+|
T Consensus 363 Vt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 363 VTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 89999988653 5788899999999999664
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=1.9e-19 Score=150.03 Aligned_cols=242 Identities=13% Similarity=0.082 Sum_probs=161.6
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~ 88 (303)
..+..|. .+..+.|+|++..++++++.|+.|++|+....+.. ..+ ..+ ..+..++
T Consensus 25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~------------------~~~-~~~~~~~ 79 (300)
T TIGR03866 25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-----GTL------------------PSG-PDPELFA 79 (300)
T ss_pred EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-----Eec------------------cCC-CCccEEE
Confidence 3444443 46778999876555578888999999998643211 111 111 1245678
Q ss_pred EeeCCCEEE-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-cEEEEECCCceeEEEEc
Q 048118 89 FSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-TVKVWNLSNCKLRATLA 166 (303)
Q Consensus 89 ~~~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-~i~iwd~~~~~~~~~~~ 166 (303)
|+|+++.++ +++.|+.+++||+......... . ....+.+++|+|++ ..++++..++ .+..||..+++......
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~--~-~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEI--P-VGVEPEGMAVSPDG--KIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe--e-CCCCcceEEECCCC--CEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 999998665 4556899999998653221111 1 11235679999986 3566666654 56778988776655443
Q ss_pred CCCCCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCCceEEEecC--------CCeEEEEEEcCCCeEEE--EEcCCcEEE
Q 048118 167 GHTGYVNTVAVSPDGSLCASG-GKDGVILLWDLAEGKRLYSLDA--------GAVIHALCFSPNRYWLC--AATEQSIKI 235 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~--~~~~~~i~i 235 (303)
. ......+.|+|+++.|+++ ..++.|++||+++++.+..+.. ......++|+|++..+. .+.++.|.+
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 2 2345778999999988554 4699999999998877655431 11234688999987543 345678999
Q ss_pred EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe-ecCCeEEEEeccc
Q 048118 236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG-YTDGVIRVWGIGR 302 (303)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g-s~Dg~v~~w~~~~ 302 (303)
||+++++++..+.. ...+..++|+|++.+|+++ +.+|.|++||+..
T Consensus 234 ~d~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 234 VDAKTYEVLDYLLV---------------------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EECCCCcEEEEEEe---------------------CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 99988776543321 0124568999999999876 5699999999854
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.5e-23 Score=175.42 Aligned_cols=200 Identities=25% Similarity=0.466 Sum_probs=165.9
Q ss_pred ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118 78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS 157 (303)
Q Consensus 78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~ 157 (303)
.+|...+.++..-..++.+++|+.|..+-+|.+....- +....+|..+|.++.|++.. ..+++|..+|+|++||+.
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--i~S~~~hespIeSl~f~~~E--~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--ITSLTGHESPIESLTFDTSE--RLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCch--hheeeccCCcceeeecCcch--hhhcccccCCceeeeehh
Confidence 45666777776666678899999999999998743211 12245789999999999863 578899999999999999
Q ss_pred CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-CeEEEEEEcCCCeEEEEEc-CCcEEE
Q 048118 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAAT-EQSIKI 235 (303)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~~~i~i 235 (303)
..+..+++.+|...+.++.|+|-+.+++.|+.|+-+++||.+..-+.+.+... ..+..+.|+|+|.|++.+. |..+++
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki 180 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI 180 (825)
T ss_pred hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence 99988999999999999999999999999999999999999988888887653 4578899999999988776 599999
Q ss_pred EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
||+..|+++++++ .|...+.++.|+|..-++++||.|++|++||+-
T Consensus 181 ~d~~agk~~~ef~--------------------~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 181 WDLTAGKLSKEFK--------------------SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ecccccccccccc--------------------cccccccccccCchhhhhccCCCCceeeeeccc
Confidence 9999998876554 233344567799988899999999999999985
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.8e-21 Score=155.96 Aligned_cols=204 Identities=20% Similarity=0.320 Sum_probs=154.9
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
..+|+++|..++|+....+.||+||.|.+|++||+....... .+..|.+.|.++.|+
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-----------------------s~~~~~k~Vq~l~wh 295 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-----------------------SITHHGKKVQTLEWH 295 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-----------------------ehhhcCCceeEEEec
Confidence 558999999999999888999999999999999998654321 123478899999999
Q ss_pred eC-CCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcC
Q 048118 91 ID-NRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAG 167 (303)
Q Consensus 91 ~~-~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~ 167 (303)
|. +..|++|+.|++|.+.|.+..... .... -.+.|..++|+|... ..++++..||.++-+|++.. +++.+++.
T Consensus 296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk---~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~A 371 (463)
T KOG0270|consen 296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK---FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKA 371 (463)
T ss_pred CCCceEEEeccccceEEeeeccCccccCceEE---eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEe
Confidence 85 678999999999999998631111 1111 134578899999764 47888999999999999874 88999999
Q ss_pred CCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCce--EEE--ecCCCeEEEEEEcCCC-eEEEE-EcCCcEEEEeCCC
Q 048118 168 HTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKR--LYS--LDAGAVIHALCFSPNR-YWLCA-ATEQSIKIWDLES 240 (303)
Q Consensus 168 ~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~--~~~--~~~~~~v~~~~~s~~~-~~l~~-~~~~~i~iwd~~~ 240 (303)
|.++|.++++++.- .++++++.|+.|++|++....+ ++. +.. ....|+++.|+- .+++. +..+.+++||+.+
T Consensus 372 Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 372 HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCccceEEEeeccc
Confidence 99999999999855 4788999999999999864433 211 111 235666777763 44444 4556799999866
Q ss_pred Cc
Q 048118 241 KS 242 (303)
Q Consensus 241 ~~ 242 (303)
..
T Consensus 451 ~~ 452 (463)
T KOG0270|consen 451 NS 452 (463)
T ss_pred Ch
Confidence 53
No 132
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.3e-20 Score=145.28 Aligned_cols=200 Identities=19% Similarity=0.273 Sum_probs=152.0
Q ss_pred ccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118 80 HTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158 (303)
Q Consensus 80 h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~ 158 (303)
..+.|-+++|+|. ..+++.++.|++||+|++.......-.....|..++.+++|+.++ ..+++|+.|+.+++||+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg--skVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG--SKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC--ceEEeeccCCceEEEEccC
Confidence 3567889999994 456669999999999998653222223344678899999999887 5789999999999999999
Q ss_pred ceeEEEEcCCCCCeeEEEECCCCC--EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEE
Q 048118 159 CKLRATLAGHTGYVNTVAVSPDGS--LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIW 236 (303)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw 236 (303)
++. .++..|.++|..+.|-+... .|++||-|.+|+.||.+..+++.+++....++++..- ....+++..+..|.+|
T Consensus 104 ~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~-~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 104 GQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL-YPMAVVATAERHIAVY 181 (347)
T ss_pred CCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc-CceeEEEecCCcEEEE
Confidence 864 45778999999999977554 7899999999999999999999999988889887542 2234455668899999
Q ss_pred eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+++++-....... + .+ .-.+.+++..+|....+.|+-+|++-+..++
T Consensus 182 nL~n~~te~k~~~--------S-------pL---k~Q~R~va~f~d~~~~alGsiEGrv~iq~id 228 (347)
T KOG0647|consen 182 NLENPPTEFKRIE--------S-------PL---KWQTRCVACFQDKDGFALGSIEGRVAIQYID 228 (347)
T ss_pred EcCCCcchhhhhc--------C-------cc---cceeeEEEEEecCCceEeeeecceEEEEecC
Confidence 9987643221100 0 01 1223556777788778999999999887764
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=2.3e-20 Score=144.90 Aligned_cols=229 Identities=24% Similarity=0.379 Sum_probs=169.3
Q ss_pred cceEEEEeCCCCcee-cccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCce-------------eeeeecCCCCccce
Q 048118 64 HFVQDVVLSSDGQFV-GHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGEC-------------KYTIQEGDAHTEWV 128 (303)
Q Consensus 64 ~~i~~~~~~~~~~~~-~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~-------------~~~~~~~~~~~~~i 128 (303)
..|..+.++++..+. .|.+.|+.+...+ .|+++++|++|+.|-+||+.... ....+....|...|
T Consensus 25 rRil~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~i 104 (397)
T KOG4283|consen 25 RRILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAI 104 (397)
T ss_pred hhhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeee
Confidence 345667777776654 6999999999998 48899999999999999974321 11123345677789
Q ss_pred EEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCC---CEEEEEeCCCeEEEEeCCCCceEE
Q 048118 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG---SLCASGGKDGVILLWDLAEGKRLY 205 (303)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~ 205 (303)
..+.|-|-+. ..+.+++.|.++++||.++-+....|+- .+.|.+-+++|-. .++|+|..|-+|++.|+.+|...+
T Consensus 105 ss~~WyP~Dt-GmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 105 SSAIWYPIDT-GMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred eeeEEeeecC-ceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 9999999653 4788999999999999988777666653 5678888888843 467888889999999999998877
Q ss_pred Eec-CCCeEEEEEEcCCCeEE-E-EEcCCcEEEEeCCCC-ceeeeeeeccccccccccCccceeeccccceeEEEEEEcC
Q 048118 206 SLD-AGAVIHALCFSPNRYWL-C-AATEQSIKIWDLESK-SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV 281 (303)
Q Consensus 206 ~~~-~~~~v~~~~~s~~~~~l-~-~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 281 (303)
++. +...|.++.|+|...++ + ++.||.|++||++.. .....+..+-. ...+. ......+...+..++|+.
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~---k~~p~---~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT---KRPPI---LKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC---ccCcc---ccccccccceeeeeeecc
Confidence 775 35789999999987554 3 346999999999754 22222221110 00000 001234555678999999
Q ss_pred CCCEEEEeecCCeEEEEec
Q 048118 282 DGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 282 ~~~~l~~gs~Dg~v~~w~~ 300 (303)
++.++++.+.|.++++|+-
T Consensus 257 d~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNM 275 (397)
T ss_pred cchhhhhccCccceEEeec
Confidence 9999999999999999975
No 134
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=2.6e-21 Score=152.09 Aligned_cols=209 Identities=23% Similarity=0.422 Sum_probs=154.3
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
..+.+++|.++|+.|.+.|.+++++++||.|.+||+|++..+ .+...+ |.+.||.+.|.+
T Consensus 127 ~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-----~Cv~Vf---------------GG~egHrdeVLS 186 (385)
T KOG1034|consen 127 CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-----VCVAVF---------------GGVEGHRDEVLS 186 (385)
T ss_pred hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-----eEEEEe---------------cccccccCcEEE
Confidence 346789999999999999999999999999999999999753 222222 456789999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceee--------------------------eeecCCCCccceEEEEEcCCCCCC
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKY--------------------------TIQEGDAHTEWVSCVRFSPNTLQP 140 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~ 140 (303)
++|+++|.++++||.|.++++|++...... .....+.|..+|-|+.|-- .
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d 262 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----D 262 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh----h
Confidence 999999999999999999999997521100 0012234555566666653 3
Q ss_pred EEEEEeCCCcEEEEECCC-c---------e----eEEEEcCCCCCeeEEE--ECCCCCEEEEEeCCCeEEEEeCCCCceE
Q 048118 141 TIVSASWDRTVKVWNLSN-C---------K----LRATLAGHTGYVNTVA--VSPDGSLCASGGKDGVILLWDLAEGKRL 204 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~-~---------~----~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 204 (303)
++++-+.++.|..|.... . + ...++.-....|+-+. |.|-++.|+.|...|.|.+||++..++.
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 678888899999997611 1 1 1223333345566654 5677889999999999999999876552
Q ss_pred E--E---ecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCC
Q 048118 205 Y--S---LDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLE 239 (303)
Q Consensus 205 ~--~---~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~ 239 (303)
. + -.....|++.+|+.++. +++++.++.|.-||..
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1 1 13467899999999985 5567889999999963
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.8e-20 Score=152.21 Aligned_cols=201 Identities=20% Similarity=0.313 Sum_probs=164.3
Q ss_pred cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118 81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 160 (303)
.+.|+++.|+|...++++++.|+.+++|.+.+.....++.......+|.+.+|.|++. ..+++++.....+.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccccc
Confidence 4689999999999999999999999999987765544544445567899999999874 478899999999999998766
Q ss_pred eE--EEEcCCC-CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEE
Q 048118 161 LR--ATLAGHT-GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIW 236 (303)
Q Consensus 161 ~~--~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iw 236 (303)
.. ....++. ..+..+.++|++++|+..+..|.|.+.-..+++.+.++.....+..++|+.++. +++++.+|.|++|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 43 2233333 356778899999999999999999999999999999999999999999999875 5567789999999
Q ss_pred eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
|++....+....-+ ..+.-++++.|+++.+||+||..|.|.+||..
T Consensus 372 nl~~~~~~~rf~D~-------------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDD-------------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ecCCcceEEEEeec-------------------CccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 99988665543321 12233678889999999999999999999854
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=8.8e-19 Score=146.06 Aligned_cols=232 Identities=16% Similarity=0.151 Sum_probs=157.4
Q ss_pred cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE-EEEeCCCcEEE
Q 048118 29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKL 107 (303)
Q Consensus 29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l-~t~~~d~~i~v 107 (303)
++++|++.|+.+++||...... ... +..+ ..+..++|+|+++.+ ++++.++.|++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~-----~~~------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV-----TRT------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQV 57 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce-----EEE------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEE
Confidence 4789999999999999864321 111 1112 235678999999876 56778899999
Q ss_pred EecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE
Q 048118 108 WNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG 187 (303)
Q Consensus 108 w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 187 (303)
||.......... ..+. .+..+.|+|++. ..+++++.++.+++||+.+.+....+..+ ..+..++|+|+++.++++
T Consensus 58 ~d~~~~~~~~~~--~~~~-~~~~~~~~~~g~-~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~ 132 (300)
T TIGR03866 58 IDLATGEVIGTL--PSGP-DPELFALHPNGK-ILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNT 132 (300)
T ss_pred EECCCCcEEEec--cCCC-CccEEEECCCCC-EEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEE
Confidence 998653322111 1122 245688999862 23455567899999999887776666532 346789999999999988
Q ss_pred eCCC-eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCceeeeeeeccccccccccCccce
Q 048118 188 GKDG-VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTAT 264 (303)
Q Consensus 188 ~~d~-~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (303)
+.++ .+.+||.++++.+...........++|+|++.+++++ .++.|++||+++++.+..+.......
T Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~---------- 202 (300)
T TIGR03866 133 SETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV---------- 202 (300)
T ss_pred ecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc----------
Confidence 8765 5677899887766555444456778999998766433 47899999999887766554221000
Q ss_pred eeccccceeEEEEEEcCCCCEEEE-eecCCeEEEEeccc
Q 048118 265 TTIKKKNIYCTSLNWSVDGSTLFS-GYTDGVIRVWGIGR 302 (303)
Q Consensus 265 ~~~~~~~~~~~~~~~sp~~~~l~~-gs~Dg~v~~w~~~~ 302 (303)
.........++|+|+++++++ .+.++.+.+||+..
T Consensus 203 ---~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 203 ---HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ---ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 000112345789999997554 45677899999853
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.6e-20 Score=142.19 Aligned_cols=206 Identities=19% Similarity=0.393 Sum_probs=150.8
Q ss_pred ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc-eee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
.+|.+.|+++.|.+-|+++|||+.|.+++|||.... ..+ .....+.|...|..+.|.+......+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 368899999999999999999999999999995322 222 223345678888888886644456899999999999997
Q ss_pred CCC---------ceeEEEEcCCCCCeeEEEECC--CCCEEEEEeCCCeEEEEeCCCCceEEEe------c--------CC
Q 048118 156 LSN---------CKLRATLAGHTGYVNTVAVSP--DGSLCASGGKDGVILLWDLAEGKRLYSL------D--------AG 210 (303)
Q Consensus 156 ~~~---------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~------~--------~~ 210 (303)
-.. .....++......|+++.|.| -|-.|++++.||.+|||+....-.+..+ + ..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 123455666778999999999 4668999999999999998654333222 1 23
Q ss_pred CeEEEEEEcCC---CeEEEEEcCC------cEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeEEEEEEc
Q 048118 211 AVIHALCFSPN---RYWLCAATEQ------SIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS 280 (303)
Q Consensus 211 ~~v~~~~~s~~---~~~l~~~~~~------~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 280 (303)
.+..++.|+|. ..+++++.+. +++||...... ... ...++.++...+.+++|.
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~-----------------kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL-----------------KVAELPDHTDPIRDISWA 232 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee-----------------eehhcCCCCCcceeeeec
Confidence 46778899986 4678888776 78888754322 111 112334566778999999
Q ss_pred CC-C---CEEEEeecCCeEEEEecc
Q 048118 281 VD-G---STLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 281 p~-~---~~l~~gs~Dg~v~~w~~~ 301 (303)
|. | .+||+++.|| |++|.+.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEe
Confidence 95 2 4799999999 9999874
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=9.1e-19 Score=145.05 Aligned_cols=279 Identities=20% Similarity=0.338 Sum_probs=191.1
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccC-------ccccceeeeeecCCCcc--------eEEEEeCCCC
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKE-------EKTYGVARRRLTGHSHF--------VQDVVLSSDG 75 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~-------~~~~~~~~~~~~~~~~~--------i~~~~~~~~~ 75 (303)
.++|.+.|++++.-.+ ..|++|+.|..|..||-.-. ....+..+....++... |..-.+....
T Consensus 283 ~~aH~ggv~~L~~lr~--GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLRD--GTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eeecCCceEEEEEecC--ccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 4489999999998754 47899999999999983210 01123333333333331 1111122222
Q ss_pred c--eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118 76 Q--FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153 (303)
Q Consensus 76 ~--~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i 153 (303)
+ ..+|....+.++.+|+..+++|++.|+.+++|+- ....+.... ..+..|+.|+|.+ .++.|...|...+
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~-~k~~wt~~~----~d~~~~~~fhpsg---~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND-HKLEWTKII----EDPAECADFHPSG---VVAVGTATGRWFV 432 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEccC-CceeEEEEe----cCceeEeeccCcc---eEEEeeccceEEE
Confidence 1 3489999999999999999999999999999993 333333322 3457899999985 6899999999999
Q ss_pred EECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---cCCCeEEEEEEcCCCeEEEE-Ec
Q 048118 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL---DAGAVIHALCFSPNRYWLCA-AT 229 (303)
Q Consensus 154 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~-~~ 229 (303)
.|.++...+..-.. +++++.++|+|+|.+||.|+.|+.|++|-+......+.. -..+++..+.||+|++++.+ +.
T Consensus 433 ~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 433 LDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred EecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC
Confidence 99988766655454 789999999999999999999999999998654332221 12489999999999987765 45
Q ss_pred CCcEEEEeCCCCcee---eeeeecccc------------------c----cc------------------cccCccceee
Q 048118 230 EQSIKIWDLESKSIV---EDLKVDLKT------------------E----AE------------------KSEATTATTT 266 (303)
Q Consensus 230 ~~~i~iwd~~~~~~~---~~~~~~~~~------------------~----~~------------------~~~~~~~~~~ 266 (303)
|-.|-.|.....+.+ ++++-.... . .. -.....+...
T Consensus 512 d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he 591 (626)
T KOG2106|consen 512 DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE 591 (626)
T ss_pred ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccccee
Confidence 778888954333222 111100000 0 00 0011112334
Q ss_pred ccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 267 IKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 267 ~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
..+|...+++++|..+..+|.+.+.|..|..|++
T Consensus 592 ~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 592 YGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 4567777899999987777776669999999986
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=2.9e-20 Score=159.72 Aligned_cols=242 Identities=21% Similarity=0.326 Sum_probs=188.6
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC--
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID-- 92 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~-- 92 (303)
+--+-+++++|++ .+||+|...|+|++|++...+... .+.+|..+|.|+.|+..
T Consensus 459 r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~-----------------------~~eAHesEilcLeyS~p~~ 514 (1080)
T KOG1408|consen 459 RFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTC-----------------------FMEAHESEILCLEYSFPVL 514 (1080)
T ss_pred ccceEEEEECCCc-ceecccCccCceEEEEehhhhhhh-----------------------heecccceeEEEeecCchh
Confidence 3457789999875 689999999999999997543221 24579999999999853
Q ss_pred -CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc-----
Q 048118 93 -NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA----- 166 (303)
Q Consensus 93 -~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~----- 166 (303)
.++||+++.|.-|.|+|...+. ..++..+.|...|++++|-.++.+..+++++.|..|.+--.++......+.
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny-~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNY-DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred hhHhhhhccCCceEEEEeccccc-chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence 4689999999999999985432 234555788999999999998877889999999988753322111111111
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC----CCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCC
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA----GAVIHALCFSPNRYWLCA-ATEQSIKIWDLESK 241 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~ 241 (303)
.....+..++..|..+++++++.|+.|+|||+.+++..+.|.. ....-.+...|.+.++++ ++|..+.++|.-++
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 1235688999999999999999999999999999999888853 233445778999977765 57999999999888
Q ss_pred ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+.+... .+|...++.+.|.||=+.|++.+.||.|.+|.+.
T Consensus 674 EcvA~m--------------------~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 674 ECVAQM--------------------TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhhhhh--------------------cCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 765432 4566678899999999999999999999999874
No 140
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=2.4e-20 Score=160.27 Aligned_cols=201 Identities=19% Similarity=0.268 Sum_probs=151.4
Q ss_pred cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCC-CCCEEEEEeCCCcEEEEECCC-
Q 048118 81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT-LQPTIVSASWDRTVKVWNLSN- 158 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~dg~i~iwd~~~- 158 (303)
.-.+.+++.+|+|++||+|..-|.++||++...... -..++|...|.|+.++... ....+++++.|..|++||...
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~--~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT--CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhh--hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 346899999999999999999999999998653222 2235788999999998533 234688999999999999854
Q ss_pred ceeEEEEcCCCCCeeEEEECCCC--CEEEEEeCCCeEEEEeCCCCc--eEEE----ecCCCeEEEEEEcCCC-eEEEEEc
Q 048118 159 CKLRATLAGHTGYVNTVAVSPDG--SLCASGGKDGVILLWDLAEGK--RLYS----LDAGAVIHALCFSPNR-YWLCAAT 229 (303)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~--~~~~----~~~~~~v~~~~~s~~~-~~l~~~~ 229 (303)
..+++++.+|...|++++|-.+| ..+++++.|..|.+--.+... .+.. ......++.++..|.. ..+.++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 46778899999999999998776 578899999876543222111 1111 1224578999999985 5667788
Q ss_pred CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
|.+|+|||+++++..+.++-.... .....-+...|.|.||++.+.|.++.++|.
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~-----------------eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDH-----------------EGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ccceEEEeccccceeeeecccccC-----------------CCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 999999999999988876643221 111123556799999999999999999986
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.1e-19 Score=151.07 Aligned_cols=237 Identities=16% Similarity=0.282 Sum_probs=180.5
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecc-cCCEEEEEEeeCCC
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGH-TKDVLSVAFSIDNR 94 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h-~~~i~~i~~~~~~~ 94 (303)
..|.+++++-. .+.||.+-.||.|.||++....- +.. .+.++ ...|-+++|++ +.
T Consensus 26 s~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~----~~~------------------vi~g~~drsIE~L~W~e-~~ 81 (691)
T KOG2048|consen 26 SEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWF----LEP------------------VIHGPEDRSIESLAWAE-GG 81 (691)
T ss_pred cceEEEEEecc-CCceeeeccCCcEEEEccCCCce----eeE------------------EEecCCCCceeeEEEcc-CC
Confidence 46889999865 46799999999999999864321 000 11122 34688999994 55
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE--EEcCCCCCe
Q 048118 95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYV 172 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~i 172 (303)
+|.+.+.+|.|.-||+.+.. .....+.-...|.+++.+|.. ..++.||.||.+..++...++... .+.-.++++
T Consensus 82 RLFS~g~sg~i~EwDl~~lk--~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDLHTLK--QKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred eEEeecCCceEEEEecccCc--eeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence 67788899999999985432 222234455679999999976 468889999988888877766543 344456899
Q ss_pred eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec---------CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCce
Q 048118 173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD---------AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSI 243 (303)
Q Consensus 173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~ 243 (303)
.+++|+|++..++.|+.||.|++||+.+++.++... ....|.++.|-.++.++++-+.|.|.+||...+.+
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcch
Confidence 999999999999999999999999999998776221 13468889888889988888999999999998877
Q ss_pred eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 244 VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
+...+. +...+.+++-.+++.++++++-|+.+..|..
T Consensus 238 iqS~~~--------------------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 238 IQSHSC--------------------HDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred hhhhhh--------------------hhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 654432 2334567888899999999999999988764
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3e-19 Score=139.42 Aligned_cols=225 Identities=21% Similarity=0.311 Sum_probs=166.2
Q ss_pred cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
|..++.+.+|.+ ...+++|+.||.|+.+|+..+... ++-.|..+|.+|.+++..
T Consensus 53 ~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~------------------------~igth~~~i~ci~~~~~~ 106 (323)
T KOG1036|consen 53 HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNED------------------------QIGTHDEGIRCIEYSYEV 106 (323)
T ss_pred cCCceeeeeccC--CceEEEeccCceEEEEEecCCcce------------------------eeccCCCceEEEEeeccC
Confidence 778899999976 357999999999999999754321 234588999999999988
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc--CCCCC
Q 048118 94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA--GHTGY 171 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~ 171 (303)
..+++|+.|+.|++||......... .+ ....|.|+...- ..|+.|+.+..+.+||+++.....+.. .-+-.
T Consensus 107 ~~vIsgsWD~~ik~wD~R~~~~~~~--~d-~~kkVy~~~v~g----~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyq 179 (323)
T KOG1036|consen 107 GCVISGSWDKTIKFWDPRNKVVVGT--FD-QGKKVYCMDVSG----NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQ 179 (323)
T ss_pred CeEEEcccCccEEEEeccccccccc--cc-cCceEEEEeccC----CEEEEeecCceEEEEEcccccchhhhccccceeE
Confidence 8999999999999999864221111 11 223688877654 368999999999999998765332211 12235
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEeCCCCc----eEEEec----------CCCeEEEEEEcCC-CeEEEEEcCCcEEEE
Q 048118 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGK----RLYSLD----------AGAVIHALCFSPN-RYWLCAATEQSIKIW 236 (303)
Q Consensus 172 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~----------~~~~v~~~~~s~~-~~~l~~~~~~~i~iw 236 (303)
+.++++.|++.=+++++-||+|.+=.+...+ .-+.+. ...+|++++|+|- +.++++++||.|.+|
T Consensus 180 tR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 180 TRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW 259 (323)
T ss_pred EEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc
Confidence 7899999988878899999999986665542 222332 1247999999997 566677889999999
Q ss_pred eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118 237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT 291 (303)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~ 291 (303)
|+.+++.+.++.- ...-+.+++|+.+|..||+|++
T Consensus 260 d~~~rKrl~q~~~--------------------~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 260 DLFNRKRLKQLAK--------------------YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCcchhhhhhccC--------------------CCCceEEEEeccCCCeEEEEec
Confidence 9998877665431 1123577999999999999875
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.4e-21 Score=172.30 Aligned_cols=246 Identities=19% Similarity=0.312 Sum_probs=181.6
Q ss_pred ceeeeecCCCCCc---EEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 17 MVTAIATPIDNSD---MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 17 ~v~~v~~~~~~~~---~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
..+.++|.+.+.+ ++|.|..||.|-+|+..+..+.. ... .-.++..|++.|..+.|++..
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~--~~~---------------~la~~~~h~G~V~gLDfN~~q 128 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA--SEE---------------VLATKSKHTGPVLGLDFNPFQ 128 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCc--chH---------------HHhhhcccCCceeeeeccccC
Confidence 4567888776554 69999999999999976521000 000 001345799999999999976
Q ss_pred C-EEEEEeCCCcEEEEecCCceeeeeec-CCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC-
Q 048118 94 R-QIVSASRDRTIKLWNTLGECKYTIQE-GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG- 170 (303)
Q Consensus 94 ~-~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 170 (303)
. +||+|+.||.|.|||+..... .... ...-.+.|.+++|+... +..|++++.+|.+.|||++..+.+-.+..+.+
T Consensus 129 ~nlLASGa~~geI~iWDlnn~~t-P~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~ 206 (1049)
T KOG0307|consen 129 GNLLASGADDGEILIWDLNKPET-PFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR 206 (1049)
T ss_pred CceeeccCCCCcEEEeccCCcCC-CCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcccccccCCCc
Confidence 5 999999999999999865221 2221 12235679999999764 44789999999999999998877666655543
Q ss_pred -CeeEEEECCCC-CEEEEEeCC---CeEEEEeCCCC-ceEEEe-cCCCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCCC
Q 048118 171 -YVNTVAVSPDG-SLCASGGKD---GVILLWDLAEG-KRLYSL-DAGAVIHALCFSPNR--YWLCAATEQSIKIWDLESK 241 (303)
Q Consensus 171 -~i~~~~~~~~~-~~l~~~~~d---~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~ 241 (303)
.+..+.|+|+. ..+++++.| -.|.+||+|.- .+++.+ .+...|.++.|++.+ .++.++.|++|.+||.+++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 47889999976 456666654 38999999853 344444 345678899999875 4556677999999999999
Q ss_pred ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEecc
Q 048118 242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~ 301 (303)
+++.++.. ...++..+.|.|... .++.++-||.|-+|.+.
T Consensus 287 Evl~~~p~--------------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 287 EVLGELPA--------------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred eEeeecCC--------------------CCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 98876542 245678899999887 88899999999999873
No 144
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.85 E-value=5e-19 Score=160.06 Aligned_cols=280 Identities=20% Similarity=0.264 Sum_probs=182.2
Q ss_pred cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK 82 (303)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~ 82 (303)
+| .++.+++.|..+|..++.+++...+|+|||.||+||+|+..+.+...+..+ +.+.+++ -..
T Consensus 1037 ~G-~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r----------S~ltys~------~~s 1099 (1431)
T KOG1240|consen 1037 RG-ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR----------SELTYSP------EGS 1099 (1431)
T ss_pred cc-eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee----------eeEEEec------cCC
Confidence 45 566789999999999999988768999999999999999876543322221 2333433 345
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCC--ceeee-----eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLG--ECKYT-----IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
++.++...+.+.++|.++.||.|++.++.. ..+.. +...+.....+..-++........++.+...+.|..||
T Consensus 1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred ceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec
Confidence 778888999999999999999999998743 11111 11111111223333443332223688888899999999
Q ss_pred CCCceeEEEE--cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--CCeEEEEEEcCCC---eEEEE-
Q 048118 156 LSNCKLRATL--AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAVIHALCFSPNR---YWLCA- 227 (303)
Q Consensus 156 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~---~~l~~- 227 (303)
.+.......+ ....+.|++++.+|.+++++.|+..|.+.+||++-+.++..+.. ..+++.++.+|-. .+.++
T Consensus 1180 ~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1180 TRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred chhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 9765433222 23457899999999999999999999999999999998887754 4566666666542 33332
Q ss_pred -E-cCCcEEEEeCCCCceeeeeeeccccccccccCcccee-eccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 228 -A-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATT-TIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 228 -~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
. ..+.|.+|++.++.--..+... +.........+.. ..+..........+...++.+.+|+.|+.||.||..
T Consensus 1260 ~~~~~nevs~wn~~~g~~~~vl~~s--~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWAS--DGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred cccCCCceeeeecccCcceEEEEcC--CCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 2 4678999999988443333222 1100000000000 000111111223344456799999999999999975
No 145
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.1e-20 Score=144.75 Aligned_cols=246 Identities=18% Similarity=0.327 Sum_probs=166.7
Q ss_pred cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee--CCCEEEEEeCCCcEE
Q 048118 29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI--DNRQIVSASRDRTIK 106 (303)
Q Consensus 29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~--~~~~l~t~~~d~~i~ 106 (303)
..+|++-..|+|++||...... + +.+.+|...++.+.|.. .+..+.+|+.||.||
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-----l------------------~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-----L------------------EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-----h------------------heecCCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence 3578888889999999765321 1 23556677777888876 467899999999999
Q ss_pred EEecCCceeeeeecCCCCc-cceEEEEEcCCCCCCEEEEEe----CCCcEEEEECCCcee--EEEEcCCCCCeeEEEECC
Q 048118 107 LWNTLGECKYTIQEGDAHT-EWVSCVRFSPNTLQPTIVSAS----WDRTVKVWNLSNCKL--RATLAGHTGYVNTVAVSP 179 (303)
Q Consensus 107 vw~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~----~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~ 179 (303)
+||++............+. .+..|++.+... ..+++|. .+..+.+||.+..+. ......|...|++++|+|
T Consensus 98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~--~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 98 LWDIRSQAESARISWTQQSGTPFICLDLNCKK--NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEEeecchhhhheeccCCCCCcceEeeccCcC--CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 9998654332222222222 445666665432 3555553 356799999987543 334567999999999999
Q ss_pred C-CCEEEEEeCCCeEEEEeCCCCc----eEEEecCCCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCCCceeeeeeecc-
Q 048118 180 D-GSLCASGGKDGVILLWDLAEGK----RLYSLDAGAVIHALCFSPNR--YWLCAATEQSIKIWDLESKSIVEDLKVDL- 251 (303)
Q Consensus 180 ~-~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~- 251 (303)
. -++|++||.||-|.++|++... .+..+...+.|..+.|...+ ++.+.+..+...+|+++.++....+..+.
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 5 4689999999999999997543 34556778899999999887 78888899999999998765432221110
Q ss_pred -----------------c-ccc----------------------ccccCccceeeccc-cceeEEEEEEcCCCCEEEEee
Q 048118 252 -----------------K-TEA----------------------EKSEATTATTTIKK-KNIYCTSLNWSVDGSTLFSGY 290 (303)
Q Consensus 252 -----------------~-~~~----------------------~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~gs 290 (303)
. +.. ......+....+++ +...|.++.|...+..+.||+
T Consensus 256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG 335 (376)
T KOG1188|consen 256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG 335 (376)
T ss_pred hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC
Confidence 0 000 00011111122222 333456677777788999999
Q ss_pred cCCeEEEEe
Q 048118 291 TDGVIRVWG 299 (303)
Q Consensus 291 ~Dg~v~~w~ 299 (303)
.||.+.+|.
T Consensus 336 EDG~l~~Wk 344 (376)
T KOG1188|consen 336 EDGLLQAWK 344 (376)
T ss_pred CCceEEEEe
Confidence 999999997
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=6.6e-19 Score=153.65 Aligned_cols=193 Identities=24% Similarity=0.349 Sum_probs=158.9
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 160 (303)
..+.+++.++.|...+.|...|.|-+|+..+.... ..-....|..+|..++...- ...+++++.+|.+.+||+++..
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC--CceEEEccCcceEEEEecCCcc
Confidence 46888999999999999999999999998654322 11122468888999988653 4579999999999999998877
Q ss_pred eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeC
Q 048118 161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAA-TEQSIKIWDL 238 (303)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~ 238 (303)
+...+.- ...+..+..+.....++.+..|-.|+++|..+.+.++.+. ++..+++++|||||.|++++ .|++|++||+
T Consensus 527 l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 527 LKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 7666654 3467788888888889999999999999999988888775 67899999999999998765 5899999999
Q ss_pred CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC-CeEEEE
Q 048118 239 ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-GVIRVW 298 (303)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-g~v~~w 298 (303)
-++.++.-+.++ ..++++.|||.|.+|||...| .-|.+|
T Consensus 606 pt~~lID~~~vd---------------------~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 606 PTGTLIDGLLVD---------------------SPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cCcceeeeEecC---------------------CcceeeEECCCCCEEEEEEecCceEEEE
Confidence 999988766542 245789999999999999999 778888
No 147
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.7e-19 Score=146.68 Aligned_cols=209 Identities=21% Similarity=0.314 Sum_probs=161.9
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR 94 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 94 (303)
.+.|.++.-+|. +.+++.|..-+.|.+|.+..+.... .+.+|-.+|+++.|+.||.
T Consensus 81 Pg~v~al~s~n~-G~~l~ag~i~g~lYlWelssG~LL~-----------------------v~~aHYQ~ITcL~fs~dgs 136 (476)
T KOG0646|consen 81 PGPVHALASSNL-GYFLLAGTISGNLYLWELSSGILLN-----------------------VLSAHYQSITCLKFSDDGS 136 (476)
T ss_pred ccceeeeecCCC-ceEEEeecccCcEEEEEeccccHHH-----------------------HHHhhccceeEEEEeCCCc
Confidence 466889987765 4566666699999999997654221 2346888999999999999
Q ss_pred EEEEEeCCCcEEEEecCC-------ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118 95 QIVSASRDRTIKLWNTLG-------ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG 167 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 167 (303)
+|+|||.||.|.+|.+.. ...........|.-.|..+...+.+...++++++.|.++++||+..+.+..++.-
T Consensus 137 ~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f 216 (476)
T KOG0646|consen 137 HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF 216 (476)
T ss_pred EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec
Confidence 999999999999997521 1122333445688889999988877778999999999999999999988776653
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------------eEEEec-C--CCeEEEEEEcCCCeEEEEE
Q 048118 168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK----------------RLYSLD-A--GAVIHALCFSPNRYWLCAA 228 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~----------------~~~~~~-~--~~~v~~~~~s~~~~~l~~~ 228 (303)
...+.+++++|.++.+..|+++|.|.+.++..-. .+..+. + +..|.+++++-||.+|+++
T Consensus 217 -p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG 295 (476)
T KOG0646|consen 217 -PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG 295 (476)
T ss_pred -CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence 4678999999999999999999999988874311 111221 1 2589999999999877665
Q ss_pred -cCCcEEEEeCCCCceeeeee
Q 048118 229 -TEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 229 -~~~~i~iwd~~~~~~~~~~~ 248 (303)
.||++.+||+.+.+.++.+.
T Consensus 296 d~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 296 DEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CCCCCEEEEecchHHHHHHHh
Confidence 59999999998877665543
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=3.3e-19 Score=152.60 Aligned_cols=210 Identities=24% Similarity=0.358 Sum_probs=148.8
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCCC-----cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRDR-----TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i 153 (303)
||--+|++++.+|++.++||++... .|++|+.... ...+....|+-.|+-++|+|++ .++++.+.|+.+.+
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W--~~~~~L~~HsLTVT~l~FSpdg--~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW--LQVQELEGHSLTVTRLAFSPDG--RYLLSVSRDRTVSL 598 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch--hhhheecccceEEEEEEECCCC--cEEEEeecCceEEe
Confidence 8889999999999999999998754 5889987442 2233345788899999999997 58999999999999
Q ss_pred EECCCce-eE---EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC--ceEEE---ecCCCeEEEEEEcCC---
Q 048118 154 WNLSNCK-LR---ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG--KRLYS---LDAGAVIHALCFSPN--- 221 (303)
Q Consensus 154 wd~~~~~-~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~---~~~~~~v~~~~~s~~--- 221 (303)
|...... .. ...+.|+..|.+..|+|++.+|+|+|+|.+|++|..... +.+.. ++....|+.+++.|-
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~ 678 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN 678 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence 9864322 11 225679999999999999999999999999999998776 33322 344678888888763
Q ss_pred --CeEEEEE-cCCcEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeEEEEEEcCC--------C--CEEE
Q 048118 222 --RYWLCAA-TEQSIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD--------G--STLF 287 (303)
Q Consensus 222 --~~~l~~~-~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--------~--~~l~ 287 (303)
+.+++++ ..|.|.+|....-. ........+. +.......+...++.+.|+|. . ..|+
T Consensus 679 e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la 749 (764)
T KOG1063|consen 679 EKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLD---------TRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA 749 (764)
T ss_pred cccceEEEEecccEEEEEecccccccccceeeeec---------cccccccChHHhhheeEeccccccccccccceeEEe
Confidence 2355555 57999999964211 1111100000 000011122334567888875 2 2479
Q ss_pred EeecCCeEEEEecc
Q 048118 288 SGYTDGVIRVWGIG 301 (303)
Q Consensus 288 ~gs~Dg~v~~w~~~ 301 (303)
+|++|..+|++++.
T Consensus 750 ~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 750 VGGDDESVRIFNVD 763 (764)
T ss_pred eecccceeEEeecc
Confidence 99999999999875
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=5.1e-19 Score=137.11 Aligned_cols=278 Identities=17% Similarity=0.265 Sum_probs=182.9
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCC-------cEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDK-------SIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK 82 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~ 82 (303)
.+..|.+.|..++-+|.+.++|+|+.+|. .+.||.+.+.-.... ..+ ...+..+ -..+.+
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~t----lE~v~~L-------dteavg 124 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SST----LECVASL-------DTEAVG 124 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cch----hhHhhcC-------CHHHhC
Confidence 46778899999999999899999998742 477998864321100 000 0000000 024567
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeee----ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTI----QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~ 158 (303)
.|.|+.|.|++..+++-. |..|.+|+......... .....+.....+-+|+|.... ..+....|++++.||+++
T Consensus 125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-nqv~tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-NQVATTSDSTLQFWDLRT 202 (370)
T ss_pred ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc-ceEEEeCCCcEEEEEccc
Confidence 899999999998888654 88999999754333111 111123445678889995432 345567899999999998
Q ss_pred ceeEEEE-cCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCC-ceEEEec-CCCeEEEEEEcCC--CeEEEEEcCCc
Q 048118 159 CKLRATL-AGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEG-KRLYSLD-AGAVIHALCFSPN--RYWLCAATEQS 232 (303)
Q Consensus 159 ~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~~~ 232 (303)
.+....+ ..|...+..+.|+|+.+ +|++|+.||.|++||.+.- .++..+. +...|.++.|+|. ..+|.+++|..
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 8766555 35778899999999876 5789999999999999854 4566554 4578999999995 45667788999
Q ss_pred EEEEeCCCCceeeeeeecccccc-------cc--ccCccceeeccccceeEEEEEEcCCCCE-EEEeecCCeEEEEeccc
Q 048118 233 IKIWDLESKSIVEDLKVDLKTEA-------EK--SEATTATTTIKKKNIYCTSLNWSVDGST-LFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~gs~Dg~v~~w~~~~ 302 (303)
+.+|....-.-...+........ +. ........++..|.--+.+++||.-.++ +|+=|.||++.+=.+.+
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 99998643221111111100000 00 0001112234445556788999987775 66779999998866543
No 150
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=8.5e-19 Score=132.82 Aligned_cols=211 Identities=21% Similarity=0.325 Sum_probs=148.5
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ 95 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 95 (303)
..|+.-+++|. ..+|+.|+.+|+|.++.+........ ..++....+ ...+|.++|+.++|+ ..+
T Consensus 11 ~tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk~~iv---------~eqahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 11 NTVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGKLKIV---------PEQAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhcccc----CCCCCccee---------eccccCCCeeeeeee--hhh
Confidence 35777788886 47999999999999999864221110 001111111 236899999999998 335
Q ss_pred EEEEeCCCcEEEEecCCcee-------e----eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118 96 IVSASRDRTIKLWNTLGECK-------Y----TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT 164 (303)
Q Consensus 96 l~t~~~d~~i~vw~~~~~~~-------~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 164 (303)
|++|+ ||.|+=|....... + ..+.....-..|+++...|.. +-++.++.|+.++.||+++++..++
T Consensus 75 Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 75 LLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred eeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEE
Confidence 66655 59999886432111 0 111111122347788888764 3466667999999999999999999
Q ss_pred EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-----------CCeEEEEEEcCCCeEEEEEcCCcE
Q 048118 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-----------GAVIHALCFSPNRYWLCAATEQSI 233 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~~~~~~i 233 (303)
+++|++.+.++.--.....+++|++||++|+||.++++.+.++.. +..|.+++- +..|++++....+
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~l 229 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKL 229 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCce
Confidence 999999999998855555778999999999999999998877632 234666654 4568999999999
Q ss_pred EEEeCCCCceeeee
Q 048118 234 KIWDLESKSIVEDL 247 (303)
Q Consensus 234 ~iwd~~~~~~~~~~ 247 (303)
.+|+++..+....+
T Consensus 230 slwhLrsse~t~vf 243 (325)
T KOG0649|consen 230 SLWHLRSSESTCVF 243 (325)
T ss_pred eEEeccCCCceEEE
Confidence 99999876654433
No 151
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=3.2e-19 Score=148.81 Aligned_cols=245 Identities=20% Similarity=0.327 Sum_probs=164.3
Q ss_pred ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceee------------eeecCCCcceEEEEeCCCCce---
Q 048118 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVAR------------RRLTGHSHFVQDVVLSSDGQF--- 77 (303)
Q Consensus 13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~--- 77 (303)
.|...|.++.|... .+.+.+++.+..+.-|+....+....... +........=..+.-+.+|++
T Consensus 12 r~~e~vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeeccccc-ceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46677889998854 45455454444555555443321110000 000001111122334455554
Q ss_pred ----------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC
Q 048118 78 ----------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW 147 (303)
Q Consensus 78 ----------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 147 (303)
.+|.+.|.+-.|+|+|.-|+|.+.||.|++|...+..+..+.+ ...+|.|++|.|+.. ..+.+ .
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q---~~~~v~c~~W~p~S~-~vl~c--~ 164 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ---NEESIRCARWAPNSN-SIVFC--Q 164 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh---cCceeEEEEECCCCC-ceEEe--c
Confidence 3799999999999999999999999999999876654433322 245699999999873 34443 3
Q ss_pred CCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEE
Q 048118 148 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLC 226 (303)
Q Consensus 148 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~ 226 (303)
.+-+.|=.+..+...-..+.|.+.|.++.|+|....+++|++|-+.++||.. |+.+++- ....+|++++|+|+. .++
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~-~~~ 242 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK-DYL 242 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc-cee
Confidence 4556666666665566788999999999999999999999999999999975 4455443 456799999999994 444
Q ss_pred EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118 227 AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV 297 (303)
Q Consensus 227 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~ 297 (303)
..+-+..++=..+. ..+..++|||||..++.|...|-|.+
T Consensus 243 v~S~nt~R~~~p~~-------------------------------GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 243 LWSYNTARFSSPRV-------------------------------GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeeeecCCCc-------------------------------cceEEEEEcCCCceeeccccCceEEE
Confidence 44444444211111 12467999999999999999998754
No 152
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=153.81 Aligned_cols=197 Identities=21% Similarity=0.338 Sum_probs=156.2
Q ss_pred cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
|.+.|.+++.. ..+|++|+.+++|.+|.+..++.. +-+...+-++..++|+.+|
T Consensus 55 ~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~-----------------------~iL~Rftlp~r~~~v~g~g 108 (933)
T KOG1274|consen 55 SGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEED-----------------------TILARFTLPIRDLAVSGSG 108 (933)
T ss_pred cCceeEEEeec---ccceEEeeccceEEEeeCCCCCcc-----------------------ceeeeeeccceEEEEecCC
Confidence 66778888764 358999999999999998765421 1122334578899999999
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC------
Q 048118 94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG------ 167 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~------ 167 (303)
+++|.||.|-.|++-+...... .....+|.++|.++.|+|++ ..+++.+.||.|++||+.++.+..++.+
T Consensus 109 ~~iaagsdD~~vK~~~~~D~s~--~~~lrgh~apVl~l~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 109 KMIAAGSDDTAVKLLNLDDSSQ--EKVLRGHDAPVLQLSYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE 184 (933)
T ss_pred cEEEeecCceeEEEEeccccch--heeecccCCceeeeeEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCcccc
Confidence 9999999999999988654322 22335789999999999986 5899999999999999998876554432
Q ss_pred --CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCC
Q 048118 168 --HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---GAVIHALCFSPNRYWLCAA-TEQSIKIWDLES 240 (303)
Q Consensus 168 --~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~ 240 (303)
....+..++|+|++..|+..+.|+.|++++..+.+..+.+.. .+.+..++|+|.|.+||++ .+|.|-+||+++
T Consensus 185 ~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 134577899999998999999999999999988777666532 3458899999999888776 499999999985
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.2e-19 Score=146.39 Aligned_cols=248 Identities=22% Similarity=0.350 Sum_probs=166.3
Q ss_pred CCcEEEEecCCCcEEEEEcccCcccc-ceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC-CCEEEEEeCCCc
Q 048118 27 NSDMIVTASRDKSIIVWHLTKEEKTY-GVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID-NRQIVSASRDRT 104 (303)
Q Consensus 27 ~~~~~~t~s~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~-~~~l~t~~~d~~ 104 (303)
.++|+|.|..|..|.|||+.-..... .+.+....... ....--....-.+|++.|..++|+.. ...||+||.|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~---~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKK---KKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhh---hhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 34799999999999999985321111 00110000000 00000001112479999999999875 468999999999
Q ss_pred EEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEEEEcCCCCCeeEEEECCCCC
Q 048118 105 IKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGS 182 (303)
Q Consensus 105 i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~ 182 (303)
|++||+.. .+...+ ..|...|.++.|+|.. ...+++|+.|++|.+.|.+.-. .-..++ -.+.|-.++|.|...
T Consensus 268 V~lWD~~~g~p~~s~---~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSI---THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSE 342 (463)
T ss_pred EEEEEcCCCCcceeh---hhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCc
Confidence 99999853 333322 3577889999999975 4589999999999999998421 111121 246788999999664
Q ss_pred -EEEEEeCCCeEEEEeCCCC-ceEEEec-CCCeEEEEEEcCC--CeEEEEEcCCcEEEEeCCCCce--eeeeeecccccc
Q 048118 183 -LCASGGKDGVILLWDLAEG-KRLYSLD-AGAVIHALCFSPN--RYWLCAATEQSIKIWDLESKSI--VEDLKVDLKTEA 255 (303)
Q Consensus 183 -~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~ 255 (303)
.++++..||+|+-+|+|.. ++++++. +...|.++++++. +.+.++++++.+++|++..... +..-.+
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~------ 416 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF------ 416 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc------
Confidence 6778889999999999965 7888875 4678999999987 4455667899999999854321 111100
Q ss_pred ccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEeccc
Q 048118 256 EKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~~ 302 (303)
.-... .+.++.|+-. +|+.|+..+.+++||+-.
T Consensus 417 ------------~~~rl--~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 417 ------------KLGRL--HCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ------------cccce--eecccCCCcceEEEecCccceEEEeeccc
Confidence 00111 2345556644 788999999999999854
No 154
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=9.3e-20 Score=150.86 Aligned_cols=233 Identities=15% Similarity=0.282 Sum_probs=177.7
Q ss_pred eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEE
Q 048118 20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSA 99 (303)
Q Consensus 20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~ 99 (303)
+....|+ ++.|++|+.-.++.|||++...+..... +..-.-.-+.++.+||.+...+|
T Consensus 470 SckL~pd-grtLivGGeastlsiWDLAapTprikae---------------------ltssapaCyALa~spDakvcFsc 527 (705)
T KOG0639|consen 470 SCKLLPD-GRTLIVGGEASTLSIWDLAAPTPRIKAE---------------------LTSSAPACYALAISPDAKVCFSC 527 (705)
T ss_pred eeEecCC-CceEEeccccceeeeeeccCCCcchhhh---------------------cCCcchhhhhhhcCCccceeeee
Confidence 3345555 4689999999999999997544322111 11111233567889999999999
Q ss_pred eCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC
Q 048118 100 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP 179 (303)
Q Consensus 100 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 179 (303)
..||.|.|||+.... .+....+|++...||..++++ ..+-+|+-|.+||.||++.+....... ....|.++.+.|
T Consensus 528 csdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~dG--tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP 602 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISKDG--TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP 602 (705)
T ss_pred ccCCcEEEEEcccce--eeecccCCCCCceeEEecCCC--ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC
Confidence 999999999997643 344556899999999999987 368899999999999998875433221 246799999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccc
Q 048118 180 DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKS 258 (303)
Q Consensus 180 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (303)
++.++++|-+.+.+-+-.....+.-..-.+.+.|.++.|.+-|+|+++ +.|+-+..|..-.+..+...+.
T Consensus 603 ~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE--------- 673 (705)
T KOG0639|consen 603 TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--------- 673 (705)
T ss_pred CccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------
Confidence 999999999999998887766555444456789999999999988765 5689999999877765544331
Q ss_pred cCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 259 EATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
...+.+++.|-|.++++|||.|....||.+
T Consensus 674 ------------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 ------------SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ------------cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 223567888899999999999999999875
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.4e-20 Score=169.06 Aligned_cols=216 Identities=19% Similarity=0.329 Sum_probs=165.4
Q ss_pred ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118 4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD 83 (303)
Q Consensus 4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~ 83 (303)
.+.++.+...|+++|..+.|++..++.+|+|++||.|.|||+++.+.-+... .....+.
T Consensus 105 ~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------------------~~~~~~e 163 (1049)
T KOG0307|consen 105 SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------------------SQAPPSE 163 (1049)
T ss_pred chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---------------------CCCCccc
Confidence 3567888999999999999999988899999999999999998643221100 0123468
Q ss_pred EEEEEEeeC-CCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC---CcEEEEECCC
Q 048118 84 VLSVAFSID-NRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD---RTVKVWNLSN 158 (303)
Q Consensus 84 i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d---g~i~iwd~~~ 158 (303)
|.+++|+.. .+.|++++.++.+.|||++... ...+... .....+..+.|||+... .+++++.| -.|.+||++.
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccc
Confidence 999999975 4578999999999999997642 1111111 11133678999998754 45555444 3599999976
Q ss_pred c-eeEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCe--EEEEEcCCcE
Q 048118 159 C-KLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRY--WLCAATEQSI 233 (303)
Q Consensus 159 ~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~--~l~~~~~~~i 233 (303)
- ...+.+.+|...|.++.|.+.+ ++|++++.|++|.+||.++++.+..+.. +..+..+.|.|... +.+++-+|.|
T Consensus 242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence 3 4567778999999999999966 7889999999999999999999998865 57899999999854 3455669999
Q ss_pred EEEeCCCCc
Q 048118 234 KIWDLESKS 242 (303)
Q Consensus 234 ~iwd~~~~~ 242 (303)
.||.+.+..
T Consensus 322 ~I~sl~~~~ 330 (1049)
T KOG0307|consen 322 SIYSLQGTD 330 (1049)
T ss_pred eeeeeecCC
Confidence 999987654
No 156
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.8e-19 Score=140.34 Aligned_cols=203 Identities=20% Similarity=0.421 Sum_probs=156.0
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEec------CC---------cee-----------------------ee
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT------LG---------ECK-----------------------YT 117 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~------~~---------~~~-----------------------~~ 117 (303)
+|.||.+.|++|.|++.+.+++|++.|++..||.. .. ++. ..
T Consensus 185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP 264 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP 264 (481)
T ss_pred eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence 58899999999999999999999999999999962 00 000 00
Q ss_pred eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEe
Q 048118 118 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197 (303)
Q Consensus 118 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd 197 (303)
+-...+|...|.+..|-..+ ..++++++|.+-.+||+++++++..+.+|....+-++-+|..+++++++.|-+.++||
T Consensus 265 l~~ltgH~~vV~a~dWL~gg--~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWD 342 (481)
T KOG0300|consen 265 LMRLTGHRAVVSACDWLAGG--QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWD 342 (481)
T ss_pred eeeeeccccceEehhhhcCc--ceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEecc
Confidence 01112355556666666554 3589999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCce-EEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeE
Q 048118 198 LAEGKR-LYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYC 274 (303)
Q Consensus 198 ~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (303)
++.... +..|+ +...|.+..|..+..++.++.|..|++||+++-+ .+..++.+ ..+
T Consensus 343 FReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd---------------------S~~ 401 (481)
T KOG0300|consen 343 FREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD---------------------SPA 401 (481)
T ss_pred chhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecC---------------------Ccc
Confidence 985432 33343 3578999999999998888899999999998642 12222211 123
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 275 TSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 275 ~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+.++.+-.++.++.--.+.-||+||++
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecC
Confidence 456667667788888888899999984
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=6.3e-19 Score=141.89 Aligned_cols=205 Identities=24% Similarity=0.316 Sum_probs=150.3
Q ss_pred eecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCcee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118 77 FVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~ 150 (303)
+.||+++|..++|+|. ...+|+|+.|.+|.||++..... ..+....+|...|.-+.|||.. .+.+++++.|..
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-PNVLLSAGSDNT 155 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-hhhHhhccCCce
Confidence 4589999999999995 56899999999999999743211 1233345788889999999975 568999999999
Q ss_pred EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEEEEE
Q 048118 151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWLCAA 228 (303)
Q Consensus 151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~ 228 (303)
|.+|++.+++...++. |.+.|.++.|+.+|.+|++++.|..|+|||.++++.+..-. .+..-..+.|-.++.+++++
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999998877777 99999999999999999999999999999999998876642 12333344566677766665
Q ss_pred ----cCCcEEEEeCCCCcee-eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCE-EEEeecCCeEEEEeccc
Q 048118 229 ----TEQSIKIWDLESKSIV-EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGST-LFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 229 ----~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~gs~Dg~v~~w~~~~ 302 (303)
++.++.+||..+-+.- ....++ .... +.-==|.||-.. .++|-.|+.||.|.+.+
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD------------------tSnG-vl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD------------------TSNG-VLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred cccccccceeccCcccccCcceeEEec------------------cCCc-eEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 4678999997543211 000000 0000 000114566664 45777899999998753
No 158
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=135.28 Aligned_cols=203 Identities=20% Similarity=0.332 Sum_probs=157.8
Q ss_pred ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC
Q 048118 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID 92 (303)
Q Consensus 13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~ 92 (303)
.+..++++..|+.-.++++.|+|-|-+..|||+..+.. +.| ..++.+|..+|+.|+|...
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-------------~~v-------kTQLIAHDKEV~DIaf~~~ 207 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-------------GTV-------KTQLIAHDKEVYDIAFLKG 207 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-------------cce-------eeEEEecCcceeEEEeccC
Confidence 34567889999987889999999999999999975310 001 1257789999999999986
Q ss_pred C-CEEEEEeCCCcEEEEecCCceeeeeecCCCC-ccceEEEEEcCCCCCCEEEEEeCC-CcEEEEECCC-ceeEEEEcCC
Q 048118 93 N-RQIVSASRDRTIKLWNTLGECKYTIQEGDAH-TEWVSCVRFSPNTLQPTIVSASWD-RTVKVWNLSN-CKLRATLAGH 168 (303)
Q Consensus 93 ~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~d-g~i~iwd~~~-~~~~~~~~~~ 168 (303)
+ ..||++|+||+||+||++.....++...++. ..+..-++|++.. .+++++-..| ..|.+.|++. ...+..+++|
T Consensus 208 s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-pnymATf~~dS~~V~iLDiR~P~tpva~L~~H 286 (364)
T KOG0290|consen 208 SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-PNYMATFAMDSNKVVILDIRVPCTPVARLRNH 286 (364)
T ss_pred ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-chHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence 5 4799999999999999977665666655554 5567778888865 3566665444 5688999975 4567889999
Q ss_pred CCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCc------eEEEecCCCeEEEEEEcCC-CeEEEEEcCCcEEEE
Q 048118 169 TGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGK------RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIW 236 (303)
Q Consensus 169 ~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~------~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~i~iw 236 (303)
.+.|+.++|.|. ..+|++++.|.++-+||+...- ++.....+..|+.+.|++. ..|++.+.+.++.+-
T Consensus 287 ~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 287 QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 999999999995 4689999999999999996532 2333456788999999975 579998888776653
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=5.7e-19 Score=146.02 Aligned_cols=237 Identities=18% Similarity=0.274 Sum_probs=169.6
Q ss_pred eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118 18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV 97 (303)
Q Consensus 18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~ 97 (303)
++.+.|...+--.+++.+.|..+++|.-.. ++..+++.... .+. .-.|++......+++
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g--~~~~Vp~~~k~-----------------~gd--~~~Cv~~~s~S~y~~ 95 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDG--KTPEVPRVRKL-----------------TGD--NAFCVACASQSLYEI 95 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccC--CCCccceeecc-----------------ccc--hHHHHhhhhcceeee
Confidence 678888754322334446688999996432 22112211111 111 112333334447899
Q ss_pred EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC-CCeeEEE
Q 048118 98 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT-GYVNTVA 176 (303)
Q Consensus 98 t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~ 176 (303)
+|+..+.|+|||+... ......+.|...|.++.++..+ .++++++..|.|.+..+.++....++.... ..|.-+.
T Consensus 96 sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred ccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 9999999999998642 2333445688899999999875 479999999999999998887777776543 4566899
Q ss_pred ECCCCCE-EEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCe--EEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118 177 VSPDGSL-CASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRY--WLCAATEQSIKIWDLESKSIVEDLKVDL 251 (303)
Q Consensus 177 ~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~--~l~~~~~~~i~iwd~~~~~~~~~~~~~~ 251 (303)
|+|..++ |.+++.+|.|.+||+....++..+. +..+...+||+|... ++.++.|.+|++||.+.++..+.+...
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~- 250 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS- 250 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec-
Confidence 9997775 5778899999999998877776653 467888999999753 445678999999999877665544321
Q ss_pred ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
.....++|+|+|.+|+.|+..|.|..||+
T Consensus 251 --------------------~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 251 --------------------HPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred --------------------CCcceeeecCCceEEEeecCCceEEEEec
Confidence 11256899999999999999999999997
No 160
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.3e-17 Score=142.61 Aligned_cols=203 Identities=20% Similarity=0.395 Sum_probs=159.8
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 160 (303)
.+|.+++++.+...||.+-.||.|-+|++...... .+... +....|.+++|.+. ..+.+.+.+|+|.-||+.+.+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAEG---GRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEccC---CeEEeecCCceEEEEecccCc
Confidence 57899999999999999999999999998654221 22222 44567999999965 479999999999999999999
Q ss_pred eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---cCCCeEEEEEEcCCCe-EEEEEcCCcEEEE
Q 048118 161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL---DAGAVIHALCFSPNRY-WLCAATEQSIKIW 236 (303)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~~~-~l~~~~~~~i~iw 236 (303)
....+....+.|++++.+|.+..++.|++||.+..++...+...+.. ...+.+-+++|+|++. ++.++.||.|++|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 98888888899999999999999999999998888887776655443 2357899999999998 5556679999999
Q ss_pred eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
|...+..+....+.+... .+....-++++.|-.+ ..|++|.+-|+|.+||-.
T Consensus 182 d~~~~~t~~~~~~~~d~l------------~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRL------------SKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSI 233 (691)
T ss_pred EcCCCceEEEeeeccccc------------ccCCceEEEEEEEeec-CcEEEecCCceEEEEccc
Confidence 999988776444332211 1123445677777644 589999999999999864
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=2.1e-18 Score=138.91 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=159.2
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
.+.||+++|..+.|+|.++..+|+||.|.+|++|.+........ ...++ ..+.+|+..|-.++|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~--------ltepv--------v~L~gH~rrVg~V~w 139 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD--------LTEPV--------VELYGHQRRVGLVQW 139 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC--------cccce--------EEEeecceeEEEEee
Confidence 36899999999999999999999999999999999976543221 11222 246789999999999
Q ss_pred eeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC
Q 048118 90 SIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH 168 (303)
Q Consensus 90 ~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 168 (303)
+|.. ..|++++.|..|.+|+........ ..+ |...|.++.|+.++ ..+++.+.|..||+||.++++.+.+-.+|
T Consensus 140 HPtA~NVLlsag~Dn~v~iWnv~tgeali--~l~-hpd~i~S~sfn~dG--s~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 140 HPTAPNVLLSAGSDNTVSIWNVGTGEALI--TLD-HPDMVYSMSFNRDG--SLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred cccchhhHhhccCCceEEEEeccCCceee--ecC-CCCeEEEEEeccCC--ceeeeecccceeEEEcCCCCcEeeecccc
Confidence 9974 578999999999999985443221 122 88899999999987 57999999999999999999988877777
Q ss_pred CCC-eeEEEECCCCCEEEEEe---CCCeEEEEeCCCC---ceEEEecCCCeEEEEEEcCCCeE--EEEEcCCcEEEEeCC
Q 048118 169 TGY-VNTVAVSPDGSLCASGG---KDGVILLWDLAEG---KRLYSLDAGAVIHALCFSPNRYW--LCAATEQSIKIWDLE 239 (303)
Q Consensus 169 ~~~-i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~~~i~iwd~~ 239 (303)
.+. -.-+.|-.++..+.+|. .++++-+||...- -.+..++..+.|.---|.++..+ |++-.|+.|+-|.+.
T Consensus 215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 642 33455666787665554 4789999987543 23445555555654556777544 445579999999986
Q ss_pred CCc
Q 048118 240 SKS 242 (303)
Q Consensus 240 ~~~ 242 (303)
+..
T Consensus 295 ~d~ 297 (472)
T KOG0303|consen 295 NEP 297 (472)
T ss_pred CCC
Confidence 543
No 162
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=7.2e-18 Score=147.20 Aligned_cols=251 Identities=19% Similarity=0.252 Sum_probs=173.4
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR 94 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 94 (303)
...|.++.|+|..+.++|.|..+|+|.+||+....... ...+ +. .-..|..++..+.|..+..
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---~s~l-------s~-------~~~sh~~~v~~vvW~~~~~ 304 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---PSGL-------SA-------LEVSHSEPVTAVVWLQNEH 304 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---Cccc-------cc-------ccccCCcCeEEEEEeccCC
Confidence 35789999999999999999999999999997543211 0101 00 1235888999999987654
Q ss_pred E--EEEEeCCCcEEEEecCCcee--e-----ee---ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc---
Q 048118 95 Q--IVSASRDRTIKLWNTLGECK--Y-----TI---QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC--- 159 (303)
Q Consensus 95 ~--l~t~~~d~~i~vw~~~~~~~--~-----~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~--- 159 (303)
- |++++.||.|..|++..... . .. .........+.+++|.+.. ...++.|+.+|.|..-.-.+.
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCccc
Confidence 4 99999999999998632110 0 00 0011123457889998865 357889999999987443222
Q ss_pred -----eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC-CCceEEEecC-CCeEEEEEEcCCCe--EEEEEcC
Q 048118 160 -----KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA-EGKRLYSLDA-GAVIHALCFSPNRY--WLCAATE 230 (303)
Q Consensus 160 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~-~~~v~~~~~s~~~~--~l~~~~~ 230 (303)
+....+..|.++|.++.++|-+..+...+.|-++++|.-. ...++..+.. ...+.+++|||... ++++..+
T Consensus 384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~ 463 (555)
T KOG1587|consen 384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGD 463 (555)
T ss_pred ccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCC
Confidence 1233556788999999999977655444449999999876 4455555543 45699999999873 3344568
Q ss_pred CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
|.|.+||+.........+.. .+......+.|++.|+.|++|...|.+++|+++
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~------------------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQK------------------VCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CceehhhhhccccCCccccc------------------ccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 99999999755432222211 111223457789999999999999999999985
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.9e-18 Score=142.95 Aligned_cols=199 Identities=20% Similarity=0.271 Sum_probs=155.2
Q ss_pred eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118 18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV 97 (303)
Q Consensus 18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~ 97 (303)
-+||+.... ..++++||..++++|||+... .+. ..+++|++.|+++.++...+++|
T Consensus 82 ~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~k-----l~h------------------r~lkdh~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 82 AFCVACASQ-SLYEISGGQSGCVKIWDLRAK-----LIH------------------RFLKDHQSTVTYVDYNNTDEYIA 137 (673)
T ss_pred HHHHhhhhc-ceeeeccCcCceeeehhhHHH-----HHh------------------hhccCCcceeEEEEecCCcceeE
Confidence 345554433 379999999999999998521 111 13467999999999999999999
Q ss_pred EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-cCCCCCeeEEE
Q 048118 98 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVA 176 (303)
Q Consensus 98 t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~ 176 (303)
+++..|-|.|..+....+.... .......++-++++|.. ...+.+++.+|.|.+||.....+...+ ..|..+...++
T Consensus 138 svs~gGdiiih~~~t~~~tt~f-~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic 215 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTF-TIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC 215 (673)
T ss_pred EeccCCcEEEEecccCccccce-ecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce
Confidence 9999999999987544332211 12223456789999975 457888999999999999877665544 56899999999
Q ss_pred ECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCc
Q 048118 177 VSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKS 242 (303)
Q Consensus 177 ~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~ 242 (303)
|+|..+ +|++.+.|.+|.+||.+.......+....+...++|+++|.+|+++ ..|.|..||++..+
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 999654 6788999999999999987777777778889999999999888776 58999999998643
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1e-18 Score=146.46 Aligned_cols=255 Identities=24% Similarity=0.336 Sum_probs=172.8
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
+..+++.|.+-|..+.|+|..+ -|+||+.|++|++|++.+..+ ... ..+-|--.|.+|.++|.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~-s~~--------------~~~epi~tfraH~gPVl~ 349 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKK-SAE--------------KDVEPILTFRAHEGPVLC 349 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCC-ccc--------------cceeeeEEEecccCceEE
Confidence 3447889999999999998754 699999999999999943110 000 000111257899999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCce----ee----eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGEC----KY----TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~----~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~ 158 (303)
+++.++++.+++|+.||+|+.|++.... .+ .....-+|.+.+..+++|+.. ..+++++.||+++.|....
T Consensus 350 v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 350 VVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred EEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCC
Confidence 9999999999999999999999653110 00 011123688889999999865 4589999999999998765
Q ss_pred ceeEEEEcCC--CCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEecC--------CCeEEEEEEcCCCeE-EE
Q 048118 159 CKLRATLAGH--TGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDA--------GAVIHALCFSPNRYW-LC 226 (303)
Q Consensus 159 ~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~-l~ 226 (303)
... .++... .+.-+++.+-... .+.++...-+.-.+.++...+.+..+.. ...++-+.++|...+ +.
T Consensus 428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~ 506 (577)
T KOG0642|consen 428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT 506 (577)
T ss_pred cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence 444 333221 2233455553322 1223333334444445554444444321 134666777887644 44
Q ss_pred EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 227 AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 227 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
+-.++.|+++|..+++++..... +...++++++-|.|.+|++|+.||.+++|.+
T Consensus 507 ~hed~~Ir~~dn~~~~~l~s~~a--------------------~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILHSMVA--------------------HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cccCCceecccccccccchheee--------------------ccceecceeecCCCceEEeecCCceeehhhc
Confidence 55789999999998887654332 3345678999999999999999999999987
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=2e-17 Score=130.28 Aligned_cols=252 Identities=21% Similarity=0.311 Sum_probs=163.7
Q ss_pred eeecCCCCCcEEEEecCCCcEEEEEcccCccccc-eeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe-------e
Q 048118 20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYG-VARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS-------I 91 (303)
Q Consensus 20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~-------~ 91 (303)
...|+|++. .|++-+.|..+.+|++....-..+ .....+.. ...+. +. ....|+..+|- |
T Consensus 54 gckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~----~~~~r------~~-eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 54 GCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSK----HLSYR------YQ-EGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred cceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCcccccc----ceeEE------ec-cCCEEEEEEeeeccccCCC
Confidence 467999875 688899999999999865321111 00000000 00111 10 12346666665 5
Q ss_pred CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCc---cceEEEEEcCCCCCCEEEEEeCCCcEEEEEC-CCce---eEEE
Q 048118 92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT---EWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCK---LRAT 164 (303)
Q Consensus 92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~-~~~~---~~~~ 164 (303)
+..++++.+.|.-|++||............-.|. ....+++|+|++.+ +.++.+..|++||. +.+. ...+
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq---lfaGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ---LFAGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe---EeecccceEEEeeccCCCCCCcchhh
Confidence 6679999999999999997543222111111122 23468999999843 44678999999998 4432 1111
Q ss_pred E----cCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEc--CCcEEEE
Q 048118 165 L----AGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAAT--EQSIKIW 236 (303)
Q Consensus 165 ~----~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~~~i~iw 236 (303)
+ .+..+.+.+++|+|.. ..+++++...++-|+.-..+.+++.+ ..+..|+.++|.++|..+.++. +..|.+|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 1 2346788999999954 58899999999999988777777766 3467899999999998776664 7899999
Q ss_pred eCCCCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118 237 DLESKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 237 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~ 303 (303)
|+|..+. +-.+.-+ ...+. ..+ -.+..|++.+|++|+.||.|++||+..|
T Consensus 279 DiR~~~~pv~~L~rh-------v~~TN-------QRI---~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 279 DIRYSRDPVYALERH-------VGDTN-------QRI---LFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred eehhccchhhhhhhh-------ccCcc-------ceE---EEecCCCCceeeccCCCccEEEEecCCC
Confidence 9986432 1111100 00011 111 1345689999999999999999998653
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=142.92 Aligned_cols=223 Identities=20% Similarity=0.329 Sum_probs=170.7
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ--------- 76 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------- 76 (303)
.++.++++|++.|++++++.++ ..||+|+.|..+.+|.-.- + +. .+. .|...|++..++|-.+
T Consensus 44 ~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~kl-E---G~--LkY-SH~D~IQCMsFNP~~h~LasCsLsd 115 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKL-E---GI--LKY-SHNDAIQCMSFNPITHQLASCSLSD 115 (1081)
T ss_pred ccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccc-c---ce--eee-ccCCeeeEeecCchHHHhhhcchhh
Confidence 6778999999999999999765 6899999999999997531 1 11 111 3666777777766322
Q ss_pred ----------eecc--cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC---CCE
Q 048118 77 ----------FVGH--TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL---QPT 141 (303)
Q Consensus 77 ----------~~~h--~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~ 141 (303)
...| ...+.+++|..||.+++.|-.+|+|.+-+..++++..+....+.+.+|.+++|+|+.. ...
T Consensus 116 FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 116 FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccce
Confidence 1123 3468899999999999999999999999888877777766556788999999999643 236
Q ss_pred EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcC
Q 048118 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSP 220 (303)
Q Consensus 142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~ 220 (303)
++...+..++.+|.+... ....-+.-.-.-.++.+-|+|++++.|+.|+.++++- +.|-.+.+. +....|..++..|
T Consensus 196 ~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred EEEEeccceeEEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc
Confidence 788899999999988543 3322222223456788999999999999999999996 556666666 3467999999999
Q ss_pred CCeEEE-EEcCCcEEEEeC
Q 048118 221 NRYWLC-AATEQSIKIWDL 238 (303)
Q Consensus 221 ~~~~l~-~~~~~~i~iwd~ 238 (303)
+++.++ ++.||.|..||+
T Consensus 274 NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCceEEEEEccCeeehhhh
Confidence 987665 567999999996
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=6.6e-18 Score=133.11 Aligned_cols=264 Identities=17% Similarity=0.277 Sum_probs=174.1
Q ss_pred ccccccceeeeecCC----CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118 11 MRAHTDMVTAIATPI----DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~----~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~ 86 (303)
.+.|+.+|+.+.|++ +....|+|+|.+ .+.+|+...+.... ..+.. ..+ .|...-+.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir--~lq~y-----------~D~-----d~~Esfyt 94 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIR--LLQSY-----------ADE-----DHDESFYT 94 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCcccee--eeeec-----------cCC-----CCCcceEE
Confidence 466878999999874 344667777664 78888876432100 00100 001 25566677
Q ss_pred EEEeeCC----CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118 87 VAFSIDN----RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR 162 (303)
Q Consensus 87 i~~~~~~----~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~ 162 (303)
++|+.+. -++|.+|.-|.|+|.|...... .....+|-..|+.++++|... +++++++.|.+||+|++++..++
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCV 171 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEE
Confidence 8887653 3788888999999999854321 223346778899999999863 58999999999999999999988
Q ss_pred EEE---cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce------EEEecC-----------------------C
Q 048118 163 ATL---AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR------LYSLDA-----------------------G 210 (303)
Q Consensus 163 ~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~-----------------------~ 210 (303)
..+ .+|.+.|.++.|+++|.+|++++-|.++++|++...+. ...+.. .
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr 251 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR 251 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence 765 56999999999999999999999999999999974321 111110 0
Q ss_pred CeEEEEEEcCCCeEEEEEcCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118 211 AVIHALCFSPNRYWLCAATEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG 289 (303)
Q Consensus 211 ~~v~~~~~s~~~~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g 289 (303)
..|.++.|-- ..+|.-+.++.|.+|... -.+-+.+.+. .+...........+....+....+|.|-+++||.|
T Consensus 252 nyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp-----~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 252 NYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKP-----PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred chHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCC-----CccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 1122222221 233444567899999862 2221111111 11111111223334445555667778889999999
Q ss_pred ecCCeEEEEeccc
Q 048118 290 YTDGVIRVWGIGR 302 (303)
Q Consensus 290 s~Dg~v~~w~~~~ 302 (303)
.+.|.|.+||+..
T Consensus 326 nq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 326 NQSGKVYVWDLDN 338 (385)
T ss_pred cCCCcEEEEECCC
Confidence 9999999999864
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=143.23 Aligned_cols=249 Identities=19% Similarity=0.358 Sum_probs=169.1
Q ss_pred ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118 17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI 96 (303)
Q Consensus 17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l 96 (303)
.|+.++|-|++..++++++ ..+.+||.+.+... ..+++|++.|++++|+.+|+++
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~ll-----------------------qtLKgHKDtVycVAys~dGkrF 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLL-----------------------QPLKGHKDTVYCVAYAKDGKRF 68 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccc-----------------------cccccccceEEEEEEccCCcee
Confidence 6899999999887766654 47889998765421 1457899999999999999999
Q ss_pred EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEE
Q 048118 97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVA 176 (303)
Q Consensus 97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 176 (303)
++|+.|+.|.+|...-+... . -.|.+.|.|..|+|-.. .+++++- ...-+|..... .+.+.+ ....+.+.+
T Consensus 69 ASG~aDK~VI~W~~klEG~L--k--YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK-~V~K~k-ss~R~~~Cs 139 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEGIL--K--YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQK-SVSKHK-SSSRIICCS 139 (1081)
T ss_pred ccCCCceeEEEeccccccee--e--eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhh-hHHhhh-hheeEEEee
Confidence 99999999999985332221 1 24788899999999652 3555443 34556765332 222222 235788899
Q ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeEEEEEEcCCC-----eEEEEE-cCCcEEEEeCCCCceeee
Q 048118 177 VSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVIHALCFSPNR-----YWLCAA-TEQSIKIWDLESKSIVED 246 (303)
Q Consensus 177 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~-----~~l~~~-~~~~i~iwd~~~~~~~~~ 246 (303)
|..||++|+.|-.+|+|.+-+-...+.+ .++ ..++|.+++|+|.. ..+++. -...+.+|.+....+-++
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~gEek~-~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~ 218 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNGEEKV-KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD 218 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCCCcce-EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc
Confidence 9999999999999999999875443333 332 35789999999962 344443 466788888754433222
Q ss_pred eeecccccccc------------cc--------CccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 247 LKVDLKTEAEK------------SE--------ATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 247 ~~~~~~~~~~~------------~~--------~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
-.....+.+.. .+ ......+......+++.+...|.+.+++.|+.||++-.|++
T Consensus 219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 22211111100 00 00011223345567899999999999999999999998876
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=3.4e-18 Score=145.44 Aligned_cols=184 Identities=23% Similarity=0.391 Sum_probs=133.2
Q ss_pred cCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce--ecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecC
Q 048118 35 SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF--VGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTL 111 (303)
Q Consensus 35 s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~ 111 (303)
|..|.|.||++....+.. ++-+ .-....|..+.|+| |.++|+.++.|+.|++|.+.
T Consensus 600 g~gG~iai~el~~PGrLP---------------------Dgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~ 658 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLP---------------------DGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLT 658 (1012)
T ss_pred CCCceEEEEEcCCCCCCC---------------------cccccccccCceeeecccCCCChHHeeecccCceEEEEEec
Confidence 556889999887543221 1111 11345788999998 56789999999999999874
Q ss_pred Ccee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEE
Q 048118 112 GECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS 186 (303)
Q Consensus 112 ~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 186 (303)
.+.. ........|.+.|.++.|||-. ...+++++.|.+|++||+.+.+....+.+|.+.|.+++|||+|+.+++
T Consensus 659 a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 659 ANGLPENEMTPEKILTIHGEKITSLRFHPLA-ADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred cCCCCcccCCcceeeecccceEEEEEecchh-hhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence 3211 1111223578889999999954 347889999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEeCCCCc-eEEEecC--CCeEEEEEEcCCCe-EEEEEc----CCcEEEEeCCC
Q 048118 187 GGKDGVILLWDLAEGK-RLYSLDA--GAVIHALCFSPNRY-WLCAAT----EQSIKIWDLES 240 (303)
Q Consensus 187 ~~~d~~v~iwd~~~~~-~~~~~~~--~~~v~~~~~s~~~~-~l~~~~----~~~i~iwd~~~ 240 (303)
.+.||++++|+.++++ +++.-.. +..--.+.|--+|. +++++. ..+|.+||.++
T Consensus 738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 9999999999998764 3433221 22222344555665 445543 45688888654
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=9.1e-18 Score=137.55 Aligned_cols=209 Identities=21% Similarity=0.266 Sum_probs=155.4
Q ss_pred ceecccCCEEEEEEeeCC--CEEEEEeCCCcEEEEecCCc--eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118 76 QFVGHTKDVLSVAFSIDN--RQIVSASRDRTIKLWNTLGE--CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV 151 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~--~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i 151 (303)
.+.-+.++|.+++|+|.. +++|+|+.-|.|-+||+... ....+..+.+|..+|.++.|+|... ..+++.+.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 355688999999999975 58899999999999998422 2223445567899999999999764 468889999999
Q ss_pred EEEECCCceeEEEEcC--CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE-Ee-cCCCeEEEEEEcCCC--eEE
Q 048118 152 KVWNLSNCKLRATLAG--HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY-SL-DAGAVIHALCFSPNR--YWL 225 (303)
Q Consensus 152 ~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~s~~~--~~l 225 (303)
+.-|+++......+.. -...+.++.|+.+.+.++.+..=|...+||++++...+ .+ .+...|.+++++|-. .++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999987654333322 33456778888888888888887899999998765422 22 234489999999975 344
Q ss_pred EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 226 CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 226 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
+++.|+..+|||++.-..... +....-.|...|.+..|||.+..|+|.+.|..|||||.+
T Consensus 340 T~s~D~T~kIWD~R~l~~K~s----------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKAS----------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ecccCcceeeeehhhhcCCCC----------------cceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 556799999999975221110 011223456667889999999899999999999999974
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=128.15 Aligned_cols=246 Identities=16% Similarity=0.258 Sum_probs=160.7
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
.|++|..+|+++.|..+ ++|.+|..-|.+++|.+..+.... .+.. .|...|+.+..
T Consensus 9 vLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~~~-----~~r~-----------------~g~~~it~lq~ 64 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERDLP-----LIRL-----------------FGRLFITNLQS 64 (323)
T ss_pred Eeccccchheehhhccc--hhhhcccccceEEEEEeecCccch-----hhhh-----------------hccceeeceee
Confidence 46699999999999743 469999999999999987542110 0110 12333444444
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCc---------------eee--------------------------------eee---
Q 048118 90 SIDNRQIVSASRDRTIKLWNTLGE---------------CKY--------------------------------TIQ--- 119 (303)
Q Consensus 90 ~~~~~~l~t~~~d~~i~vw~~~~~---------------~~~--------------------------------~~~--- 119 (303)
-|+ ..+.+-+.|..+.+|++... +.. .+.
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 443 23444455555555543110 000 000
Q ss_pred -cCCCCccceEEEEEcCC-CCCCEEEEEeCCCcEEEEECCCc----------eeEEEEcCCCCCeeEEEECCCCCEEEEE
Q 048118 120 -EGDAHTEWVSCVRFSPN-TLQPTIVSASWDRTVKVWNLSNC----------KLRATLAGHTGYVNTVAVSPDGSLCASG 187 (303)
Q Consensus 120 -~~~~~~~~i~~~~~~~~-~~~~~~~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 187 (303)
......+.+.|..+... .....+++|..+|.+.+||+.++ +....+..|.++|.++.+.+....=++|
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 01122334555554332 23446778889999999999886 3334456789999999998755555778
Q ss_pred eCCCeEEEEeCCCCce---EE-Ee-cCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCc
Q 048118 188 GKDGVILLWDLAEGKR---LY-SL-DAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEAT 261 (303)
Q Consensus 188 ~~d~~v~iwd~~~~~~---~~-~~-~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 261 (303)
+.+..+.+|++..... +. .+ .....+..+.+.||++++|++ -|++|++|+.++...+..+
T Consensus 224 ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL-------------- 289 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL-------------- 289 (323)
T ss_pred CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh--------------
Confidence 8888899999864321 11 11 123446677888999888765 5999999999887655433
Q ss_pred cceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 262 TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
+.|...+++++|+|+...+|.+|.|++|-+|++
T Consensus 290 ------kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 ------KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 445566899999999999999999999999986
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.3e-17 Score=137.24 Aligned_cols=200 Identities=22% Similarity=0.331 Sum_probs=149.1
Q ss_pred eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
|.||++.|.+|+..|.|.+|++|+.||+||||.+.+ .+.+.++. ...|.|++|+|.+....++++-.+ .+.+-+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 679999999999999999999999999999999854 44444432 235999999998754444444333 233332
Q ss_pred C---------------------------------CCc----eeEEEEcCCCCCeeEEEECCCCCEEEEEeCC---CeEEE
Q 048118 156 L---------------------------------SNC----KLRATLAGHTGYVNTVAVSPDGSLCASGGKD---GVILL 195 (303)
Q Consensus 156 ~---------------------------------~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~i 195 (303)
. ... .-+.....|...|..+.|+-.|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 1 100 0011233467789999999999999987654 47888
Q ss_pred EeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeE
Q 048118 196 WDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYC 274 (303)
Q Consensus 196 wd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (303)
.++........+ .....+..+.|+|....+.+++...|++||+..+.+++++.. ..-++
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t--------------------g~kwi 610 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT--------------------GSKWI 610 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc--------------------CCeee
Confidence 888655433333 345788999999999999999999999999988877766532 12356
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 275 TSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 275 ~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
..++.+|.|..|+.|+.|+.+..||++
T Consensus 611 S~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 611 SSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred eeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 778999999999999999999999885
No 173
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=1e-16 Score=136.40 Aligned_cols=227 Identities=17% Similarity=0.245 Sum_probs=146.8
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCc--cccceeeeeecCCCcc---eEEEEeCCCCceecccCCEE
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEE--KTYGVARRRLTGHSHF---VQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~h~~~i~ 85 (303)
+.||...|.+++|.|.+...|+||+.||.|.|||+.... .....+......|... ...+ -....+.++|...|.
T Consensus 140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~-~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL-KKRIRKWKAASNTIF 218 (720)
T ss_pred ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh-hccccccccccCcee
Confidence 889999999999999999999999999999999985322 1101111111111110 0000 001123456666666
Q ss_pred E---EEEeeCCCEEEEEeC-CCcEEEEecCCceeee------eecCCCC---ccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118 86 S---VAFSIDNRQIVSASR-DRTIKLWNTLGECKYT------IQEGDAH---TEWVSCVRFSPNTLQPTIVSASWDRTVK 152 (303)
Q Consensus 86 ~---i~~~~~~~~l~t~~~-d~~i~vw~~~~~~~~~------~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~dg~i~ 152 (303)
+ +-+..|...||++++ |+.|+|||+....... ......+ .-.+.++..... ..++.+.+.|+.|+
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss--Gt~L~AsCtD~sIy 296 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS--GTYLFASCTDNSIY 296 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC--CCeEEEEecCCcEE
Confidence 6 667788889999988 9999999986432110 0000111 223455555443 35677777799999
Q ss_pred EEECCCce--eEEEEcCCCCC-e-eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCC--CeE
Q 048118 153 VWNLSNCK--LRATLAGHTGY-V-NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN--RYW 224 (303)
Q Consensus 153 iwd~~~~~--~~~~~~~~~~~-i-~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~--~~~ 224 (303)
+|++.... +...+.++... + ..-..+|++.+|++|+.|...++|.+...+.--.. -+.-.|.+++|.|. ..+
T Consensus 297 ~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v 376 (720)
T KOG0321|consen 297 FYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPV 376 (720)
T ss_pred EEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCc
Confidence 99986532 33344443321 1 12246899999999999999999998765432222 23456888999775 577
Q ss_pred EEEEcCCcEEEEeCCC
Q 048118 225 LCAATEQSIKIWDLES 240 (303)
Q Consensus 225 l~~~~~~~i~iwd~~~ 240 (303)
++++.|..+.+|++..
T Consensus 377 ~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 377 ATCSDDFRVKIWRLSN 392 (720)
T ss_pred eeeccCcceEEEeccC
Confidence 8888899999999854
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7e-16 Score=124.63 Aligned_cols=270 Identities=15% Similarity=0.197 Sum_probs=175.8
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccc-eeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYG-VARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
..+.+|.+-|+++.|+- ++++||+|+.|..+++|++...-.... .+.. + .-..|...|.++
T Consensus 50 KD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~----------------~~~~H~SNIF~L 111 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-V----------------MEHPHRSNIFSL 111 (609)
T ss_pred hhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCce-e----------------ccCccccceEEE
Confidence 35889999999999995 478999999999999999853210000 0000 0 011367899999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEE--E
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRA--T 164 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~--~ 164 (303)
+|......+.+|+.+++|.+.|+.......+.........|..+..+|. .+.+++.+.++.|.+||.+..+ ... -
T Consensus 112 ~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 112 EFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred EEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceee
Confidence 9999999999999999999999876555444433333447889988886 3689999999999999997654 211 1
Q ss_pred EcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCce-EEE------ecC-C-------------------------
Q 048118 165 LAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKR-LYS------LDA-G------------------------- 210 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~-~~~------~~~-~------------------------- 210 (303)
..........+.|+|.. .+|++.+..+-+.+||.+..+. ++. ++. .
T Consensus 190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence 22233456778899965 5778888999999999865321 000 000 0
Q ss_pred ------------------------CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc-eeeeeeeccccccccc----cCc
Q 048118 211 ------------------------AVIHALCFSPNRYWLCAATEQSIKIWDLESKS-IVEDLKVDLKTEAEKS----EAT 261 (303)
Q Consensus 211 ------------------------~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~----~~~ 261 (303)
..+.+++|-.+..++.++.+=.|++|.+-..- ...-. ++....+.. -..
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~--~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFT--QIGHDEEEMPSEIFIE 347 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCcc--ccCcchhhCchhheec
Confidence 02333444433333333334467777763210 00000 011100011 112
Q ss_pred cceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 262 TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
.....+++|...++.+.|+|...+|++.+-.+.+++|.-
T Consensus 348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 233467788888999999999999999999999999964
No 175
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.9e-16 Score=139.83 Aligned_cols=254 Identities=19% Similarity=0.279 Sum_probs=166.5
Q ss_pred eeeee-cCCCCCcEEEEecCCCcEEEEEcccCc-cccceeeeeecCCCcceEEEEeCC-CCceecccCCEEEEEEeeCCC
Q 048118 18 VTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEE-KTYGVARRRLTGHSHFVQDVVLSS-DGQFVGHTKDVLSVAFSIDNR 94 (303)
Q Consensus 18 v~~v~-~~~~~~~~~~t~s~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~h~~~i~~i~~~~~~~ 94 (303)
|+.+. .+-.+..++++|+.||.||||+-.... ++... |+ +|.+ .+...+-.+.-.-++|.....
T Consensus 1112 Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eL-----------VT--aw~~Ls~~~~~~r~~~~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1112 VSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPEL-----------VT--AWSSLSDQLPGARGTGLVVDWQQQSG 1178 (1387)
T ss_pred cceeeeecccchhheeeeccCceEEEecccccccCCcee-----------EE--eeccccccCccCCCCCeeeehhhhCC
Confidence 44443 344456799999999999999754321 11100 00 1111 122222222224468888777
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---eEEEEcCCCCC
Q 048118 95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---LRATLAGHTGY 171 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~ 171 (303)
+|+++|.-..|+|||...+....-... ..+.-++++.-+... .+.+++|..||+|++||.+... .+...+.|+..
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~-~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPY-GSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeeccc-CCCccceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 777777789999999865433221111 122334554433322 3678999999999999987532 45667788876
Q ss_pred --eeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceE--EEe----cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc
Q 048118 172 --VNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRL--YSL----DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKS 242 (303)
Q Consensus 172 --i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~--~~~----~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~ 242 (303)
|..+.+.+.|- .|++|+.+|.|++||++..... .++ +.++..+++..+++..++|+++.+.|.||++...+
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence 99999988764 5999999999999999874221 122 23556889999999999999888999999986543
Q ss_pred eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
+..++.. ...+......+.+++|+|...++|+|+.|.+|.+|.-
T Consensus 1337 -l~~~k~n-------------~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1337 -LNIIKYN-------------PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred -hcccccC-------------cccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 3222211 0011112223478999999999999999999999964
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=9.1e-17 Score=129.95 Aligned_cols=207 Identities=22% Similarity=0.380 Sum_probs=148.2
Q ss_pred CCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCc-------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118 82 KDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGE-------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153 (303)
Q Consensus 82 ~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i 153 (303)
.++..+.|.++.. .++||+.|..|++|.+... ..........|...|+++.|+|++ ..+++|+.+|.|.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g--elLASg~D~g~v~l 91 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG--ELLASGGDGGEVFL 91 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc--CeeeecCCCceEEE
Confidence 4788899998876 9999999999999976321 111223344688889999999987 47999999999999
Q ss_pred EECC--------C--------ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEE
Q 048118 154 WNLS--------N--------CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHAL 216 (303)
Q Consensus 154 wd~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 216 (303)
|... + ......+.+|...|..++|+|+++++++++-|..+++||+..|+.+.... +...++.+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9765 2 22345677899999999999999999999999999999999999887764 46789999
Q ss_pred EEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeecccccc-ccccCccceeecc--ccceeEEEEEEcCCCCEEEEee
Q 048118 217 CFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEA-EKSEATTATTTIK--KKNIYCTSLNWSVDGSTLFSGY 290 (303)
Q Consensus 217 ~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~l~~gs 290 (303)
+|.|-.++++. +.|...+.+.+...+.+........... ..+........++ ....+...++|+|+|.+|++..
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99998877765 5576677777665555444331111111 0111111111111 1223456789999999998764
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1e-14 Score=123.46 Aligned_cols=255 Identities=14% Similarity=0.172 Sum_probs=154.7
Q ss_pred eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV 84 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i 84 (303)
++++.++.. ......+.++|++..+++++..++.|.+|++..... .... . .. ...+..
T Consensus 25 l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~-~----------~~---------~~~~~p 82 (330)
T PRK11028 25 LTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFA-A----------ES---------PLPGSP 82 (330)
T ss_pred eeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEe-e----------ee---------cCCCCc
Confidence 344555542 345667888987654445556688999999863211 0000 0 00 011235
Q ss_pred EEEEEeeCCCEEEEEeC-CCcEEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118 85 LSVAFSIDNRQIVSASR-DRTIKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~-d~~i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~ 161 (303)
..++++|+++++++++. ++.|.+|++..... ...... .+.....+++++|++ ...+++...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDN-RTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCC-CEEEEeeCCCCEEEEEEECCCCc
Confidence 67999999998887764 78999998753211 111111 122235678899986 33446666779999999976321
Q ss_pred EE-------EEcCCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeCCC--Cc--eEEEecC-------CCeEEEEEEcCCC
Q 048118 162 RA-------TLAGHTGYVNTVAVSPDGSLCASGGK-DGVILLWDLAE--GK--RLYSLDA-------GAVIHALCFSPNR 222 (303)
Q Consensus 162 ~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~--~~--~~~~~~~-------~~~v~~~~~s~~~ 222 (303)
.. .... ......+.|+|++++++++.. +++|.+|++.. ++ .+..+.. ......+.++|++
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 11 1111 233567899999999987776 89999999973 22 2333221 1123358899998
Q ss_pred eEEEEEc--CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec-CCeEEEEe
Q 048118 223 YWLCAAT--EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT-DGVIRVWG 299 (303)
Q Consensus 223 ~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~-Dg~v~~w~ 299 (303)
.++.++. ++.|.+|+++.......+.-.... ......+.++|+|++|++++. +++|.+|+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-----------------~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-----------------ETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-----------------cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 8776653 678999998543211111100000 012245789999999998775 99999998
Q ss_pred cc
Q 048118 300 IG 301 (303)
Q Consensus 300 ~~ 301 (303)
++
T Consensus 303 ~~ 304 (330)
T PRK11028 303 ID 304 (330)
T ss_pred Ec
Confidence 74
No 178
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=119.26 Aligned_cols=194 Identities=14% Similarity=0.188 Sum_probs=141.2
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 163 (303)
-.++.|++.|.+||.|+.||.|.+||..+.... ....+|..+|.+++|++++ ..+++++.|.+|.+||+..+.+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~lsaH~~pi~sl~WS~dg--r~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLSAHVRPITSLCWSRDG--RKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhhccccceeEEEecCCC--CEeeeecCCceeEEEeccCCCcee
Confidence 568999999999999999999999998543221 2234688899999999997 479999999999999999998887
Q ss_pred EEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCce-EEEecC----CCeEEEEEEcCCCeEEEE-EcCCcEEEE
Q 048118 164 TLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKR-LYSLDA----GAVIHALCFSPNRYWLCA-ATEQSIKIW 236 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~----~~~v~~~~~s~~~~~l~~-~~~~~i~iw 236 (303)
.+. ...+|+...|+|..+ .+++.--+..-.+-++..+.. +...+. ........|.+.|.++.+ .+-|.+.+|
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 776 467999999999543 444333344445555543221 111111 112222357777766654 467999999
Q ss_pred eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
|.++.+.+..+++.. ...+..+.++..|+.|+..++|..||.|++.
T Consensus 181 ~a~t~e~vas~rits-------------------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 181 DAETLECVASFRITS-------------------VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred ecchheeeeeeeech-------------------heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 999888777665431 1234568889999999999999999999875
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.71 E-value=4.4e-14 Score=122.43 Aligned_cols=244 Identities=36% Similarity=0.604 Sum_probs=174.6
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceeccc-CCEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHT-KDVLSVA 88 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~-~~i~~i~ 88 (303)
.+..|...+..+.+.+.+ ..++.++.|+.+.+|+...... .... +.++. ..+..+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~----~~~~------------------~~~~~~~~~~~~~ 116 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEK----LIKS------------------LEGLHDSSVSKLA 116 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCce----eEEE------------------EeccCCCceeeEE
Confidence 356788999999999765 5788888999999999865420 0111 11111 2455555
Q ss_pred E-eeCCC-EEEEEeC-CCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-CCcEEEEECCCceeEE
Q 048118 89 F-SIDNR-QIVSASR-DRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-DRTVKVWNLSNCKLRA 163 (303)
Q Consensus 89 ~-~~~~~-~l~t~~~-d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-dg~i~iwd~~~~~~~~ 163 (303)
+ ++++. .++..+. |+.+.+|+... ... ......|...+..++|+|++. .++.++. ++.+++|+....+...
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKL--IRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred EECCCcceEEeccCCCCccEEEEEecCCCeE--EEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEE
Confidence 5 67776 5555444 99999999864 111 222245777889999999863 5666765 9999999998878888
Q ss_pred EEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEE-EecCC-CeEEEEEEcCCC-eEEEEEcCCcEEEEeCC
Q 048118 164 TLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLY-SLDAG-AVIHALCFSPNR-YWLCAATEQSIKIWDLE 239 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~-~~~~~-~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~ 239 (303)
.+.+|...+.+++++|++. .+++++.|+.+++||...+..+. .+... ... ...|+|++ .+++++.++.+++|+.+
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 8888999999999999998 55555899999999988777666 34322 222 22799998 45556779999999997
Q ss_pred CCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 240 SKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 240 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.... +..+ ..+...+..+.|+|++..+++++.|+.+++|++.
T Consensus 272 ~~~~~~~~~--------------------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 272 SSSSLLRTL--------------------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred CCCcEEEEE--------------------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence 6543 1111 1123445677899988888889999999999874
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=6.6e-14 Score=112.39 Aligned_cols=235 Identities=16% Similarity=0.258 Sum_probs=158.5
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR 94 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 94 (303)
...++.+.|+.+ ...|..|+.|| .++|..++.++.. .... ..-.|.-+-|+ ..
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~----~~~~-------------------~~~~IvEmLFS--SS 57 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCF----SKDT-------------------EGVSIVEMLFS--SS 57 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhh----cccC-------------------CCeEEEEeecc--cc
Confidence 345677778754 34566666665 6778776544311 0000 00123333344 34
Q ss_pred EEEEEeCC--CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC---C
Q 048118 95 QIVSASRD--RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH---T 169 (303)
Q Consensus 95 ~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~---~ 169 (303)
++|..+.+ +.+++.++.......-. .....|.+++++.+ .++++ -.+.|+|||+++.++..++..- .
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~---~fpt~IL~VrmNr~----RLvV~-Lee~IyIydI~~MklLhTI~t~~~n~ 129 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEI---FFPTSILAVRMNRK----RLVVC-LEESIYIYDIKDMKLLHTIETTPPNP 129 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEE---ecCCceEEEEEccc----eEEEE-EcccEEEEecccceeehhhhccCCCc
Confidence 55555544 34888887654433222 12456889999865 35544 3445999999999988877543 3
Q ss_pred CCeeEEEECCCCCEEEEEe--CCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcC-C-cEEEEeCCCCcee
Q 048118 170 GYVNTVAVSPDGSLCASGG--KDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATE-Q-SIKIWDLESKSIV 244 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-~-~i~iwd~~~~~~~ 244 (303)
..+.++.+++.+.+++--+ ..|.|.+||+.+-+++..+. +.+.+-+++|+++|.++|.+++ | -|++|.+.+++.+
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL 209 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe
Confidence 3455566666666887533 47899999999888877775 4678999999999999988765 3 4899999999888
Q ss_pred eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 245 EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
.+++- ......+.+++|+|++.+|++.|+.++|++|.+.+
T Consensus 210 ~eFRR------------------G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 210 YEFRR------------------GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeeeC------------------CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 76642 11234568899999999999999999999998853
No 181
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=1.3e-15 Score=120.20 Aligned_cols=223 Identities=23% Similarity=0.369 Sum_probs=153.9
Q ss_pred CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC---CEEEEEEeeCCCEEEEEeCCC
Q 048118 27 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK---DVLSVAFSIDNRQIVSASRDR 103 (303)
Q Consensus 27 ~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~---~i~~i~~~~~~~~l~t~~~d~ 103 (303)
...++|+.+.|.-|.+||.-.++. +..+.+ ..|.+ .-.+++|+|||++|.+| ...
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~l-----raSy~~----------------ydh~de~taAhsL~Fs~DGeqlfaG-ykr 179 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKL-----RASYRA----------------YDHQDEYTAAHSLQFSPDGEQLFAG-YKR 179 (406)
T ss_pred ccceeeeccccCceeeeecccccc-----ccchhh----------------hhhHHhhhhheeEEecCCCCeEeec-ccc
Confidence 357999999999999999854331 111110 11222 23579999999999865 457
Q ss_pred cEEEEecCCc-e---eee-eec-CCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEE
Q 048118 104 TIKLWNTLGE-C---KYT-IQE-GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV 177 (303)
Q Consensus 104 ~i~vw~~~~~-~---~~~-~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 177 (303)
.|+++|+... + .+. +.. .......|.|++|+|... ..++.|+.-..+-+|.-.++.+...+-+|.+.|+.+.|
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEe
Confidence 8999997321 1 111 111 123355688999999763 36788888888888887788888888899999999999
Q ss_pred CCCCCEEEEEeC-CCeEEEEeCCC-CceEEEecC----CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCC-Cceeeeeee
Q 048118 178 SPDGSLCASGGK-DGVILLWDLAE-GKRLYSLDA----GAVIHALCFSPNRYWLCAA-TEQSIKIWDLES-KSIVEDLKV 249 (303)
Q Consensus 178 ~~~~~~l~~~~~-d~~v~iwd~~~-~~~~~~~~~----~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~-~~~~~~~~~ 249 (303)
.++|+.|.+|++ |-.|-.||++. +++++.+.. ...--.+...|.+.+|+++ ++|.|++||++. +..+.
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s---- 334 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS---- 334 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc----
Confidence 999999999985 78999999985 445555421 1222235567889999887 799999999976 32111
Q ss_pred ccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC
Q 048118 250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD 292 (303)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D 292 (303)
....+...++.++++|-=+++||+|..
T Consensus 335 ----------------v~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 335 ----------------VTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ----------------ccccccccccceecCcccceeeeccCc
Confidence 111222334667788876677776643
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3e-16 Score=131.69 Aligned_cols=226 Identities=19% Similarity=0.363 Sum_probs=154.2
Q ss_pred CCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118 74 DGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153 (303)
Q Consensus 74 ~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i 153 (303)
+..+.||++-|+++.|+.+|.+|++|+.|-.+.|||... .+......-+|...|.+++|-|......+++|..|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 346789999999999999999999999999999999753 2222223346889999999999876678899999999999
Q ss_pred EECCCc----------eeEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEE----------Ee-cCCC
Q 048118 154 WNLSNC----------KLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLY----------SL-DAGA 211 (303)
Q Consensus 154 wd~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~----------~~-~~~~ 211 (303)
+|+..- .....+..|...|..++.-|++ ..+-++++||+++-+|+++...-. .. ..-.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 998641 2233456788899999999988 678999999999999998743110 00 0113
Q ss_pred eEEEEEEcCCC-eEE-EEEcCCcEEEEeCCCCceeeeeeec----cccc----cccccCccceeecc----ccceeEEEE
Q 048118 212 VIHALCFSPNR-YWL-CAATEQSIKIWDLESKSIVEDLKVD----LKTE----AEKSEATTATTTIK----KKNIYCTSL 277 (303)
Q Consensus 212 ~v~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~----~~~~~~~~~ 277 (303)
...++..+|.. .+| +++++-..++||.+.- ++.+.-. ..++ +-..-........+ .....++-+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 46788899975 344 5567888999996321 1111110 0000 00000000000011 111235778
Q ss_pred EEcCCCCEEEEeecCCeEEEEeccc
Q 048118 278 NWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 278 ~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
.|+|.|.-|++.-.---|.+||+.+
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecC
Confidence 8999999888877777889998853
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=1.3e-15 Score=118.35 Aligned_cols=204 Identities=24% Similarity=0.383 Sum_probs=145.3
Q ss_pred ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee-
Q 048118 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI- 91 (303)
Q Consensus 13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~- 91 (303)
.|-+.|.||-|.|+. +.+++-. |..|.+|++....+... .+..+. -.+|+...++-+|+|
T Consensus 121 eavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~va--------------ev~ss~---s~e~~~~ftsg~WspH 181 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVA--------------EVLSSE---SAEMRHSFTSGAWSPH 181 (370)
T ss_pred HHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchhe--------------eecccc---cccccceecccccCCC
Confidence 344589999999965 5666655 88999999976543111 111111 112566677888988
Q ss_pred -CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCC
Q 048118 92 -DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHT 169 (303)
Q Consensus 92 -~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 169 (303)
++..+++. .|++++.||++..... ....++|-..+..+.|+|+. +-.+++++.||.|++||.+.. .++.++.+|.
T Consensus 182 Hdgnqv~tt-~d~tl~~~D~RT~~~~-~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs 258 (370)
T KOG1007|consen 182 HDGNQVATT-SDSTLQFWDLRTMKKN-NSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHS 258 (370)
T ss_pred CccceEEEe-CCCcEEEEEccchhhh-cchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence 56777765 5689999998643221 22235677779999999985 568999999999999999764 4678889999
Q ss_pred CCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCC---c------------------e--------EEEe-cCCCeEEEEEE
Q 048118 170 GYVNTVAVSPD-GSLCASGGKDGVILLWDLAEG---K------------------R--------LYSL-DAGAVIHALCF 218 (303)
Q Consensus 170 ~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~---~------------------~--------~~~~-~~~~~v~~~~~ 218 (303)
-.|++++|+|. .+++++++.|..|.+|....- + . +.++ .....|++++|
T Consensus 259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW 338 (370)
T KOG1007|consen 259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW 338 (370)
T ss_pred eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence 99999999995 467889999999999976321 0 1 1111 23567999999
Q ss_pred cCCCeEEEEE--cCCcEEEEeC
Q 048118 219 SPNRYWLCAA--TEQSIKIWDL 238 (303)
Q Consensus 219 s~~~~~l~~~--~~~~i~iwd~ 238 (303)
|.-..|+.++ .||++.|=.+
T Consensus 339 SsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccCCCeeEEEeccCceEEeecC
Confidence 9988877554 5888776544
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=3.9e-15 Score=130.02 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=128.5
Q ss_pred ecccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEE-EeCCCcEEE
Q 048118 78 VGHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS-ASWDRTVKV 153 (303)
Q Consensus 78 ~~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~dg~i~i 153 (303)
..|...+...+|+|+|++++..+.+ ..|.+||+.+.....+.....+ ...++|+|++. .++. ...+|.+.+
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~I 274 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNI 274 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCC--EEEEEEecCCcEEE
Confidence 3466678899999999999887654 3699999865433233322222 33688999873 4554 456787665
Q ss_pred E--ECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEc
Q 048118 154 W--NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAAT 229 (303)
Q Consensus 154 w--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 229 (303)
| |+.+++. ..+..+...+....|+|+|+.|+.++ .++..++|++... .....+.... ....|+|++..++...
T Consensus 275 y~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 275 YVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMIN 351 (429)
T ss_pred EEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEc
Confidence 5 6655554 44555666788899999999877655 5788888876432 1122222222 4578999998887766
Q ss_pred CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
...+.+||+.+++... +... . ...+..|+|+|++|+.++.+|...+|.+
T Consensus 352 ~~~i~~~Dl~~g~~~~-lt~~----------------~-----~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 352 GDNVVKQDLTSGSTEV-LSST----------------F-----LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCEEEEECCCCCeEE-ecCC----------------C-----CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 6778889998775421 1100 0 0123679999999999999999888875
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=4.1e-17 Score=142.75 Aligned_cols=241 Identities=22% Similarity=0.338 Sum_probs=164.7
Q ss_pred cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+..+.+|..+|+|+.|+..+ .+++||+.|..++||...... +++ .+.||++.|+.+
T Consensus 183 ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~-----~lA------------------s~rGhs~ditdl 238 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR-----CLA------------------SCRGHSGDITDL 238 (1113)
T ss_pred HHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchh-----hhc------------------cCCCCccccchh
Confidence 34588999999999999765 799999999999999864321 111 356899999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc--------
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-------- 159 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-------- 159 (303)
+.+.+..++++++.|..|++|.+..... +.....|++.|++++|+|- .+.+.||++++||.+-.
T Consensus 239 avs~~n~~iaaaS~D~vIrvWrl~~~~p--vsvLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp 310 (1113)
T KOG0644|consen 239 AVSSNNTMIAAASNDKVIRVWRLPDGAP--VSVLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRP 310 (1113)
T ss_pred ccchhhhhhhhcccCceEEEEecCCCch--HHHHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCC
Confidence 9999999999999999999999864332 3334579999999999994 26688999999997510
Q ss_pred ------eeEEEEc----------C------CCCCeeEEEECCCC-----------CEEEEEeCCCeEEEEeCCCCceEEE
Q 048118 160 ------KLRATLA----------G------HTGYVNTVAVSPDG-----------SLCASGGKDGVILLWDLAEGKRLYS 206 (303)
Q Consensus 160 ------~~~~~~~----------~------~~~~i~~~~~~~~~-----------~~l~~~~~d~~v~iwd~~~~~~~~~ 206 (303)
.+...+. + .+-....++|.... .+.+++-.+..+.+|++.+++.++.
T Consensus 311 ~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~ 390 (1113)
T KOG0644|consen 311 LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN 390 (1113)
T ss_pred CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhh
Confidence 0000000 0 00011112222222 2233444566778888888876654
Q ss_pred e-cCCCeEEEEEEcCCCeEE--EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC
Q 048118 207 L-DAGAVIHALCFSPNRYWL--CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG 283 (303)
Q Consensus 207 ~-~~~~~v~~~~~s~~~~~l--~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 283 (303)
. .....++.+.++|-...+ .++.||+..|||+-.+..++.+... ......-.||+||
T Consensus 391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--------------------h~kl~d~kFSqdg 450 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--------------------HGKLVDGKFSQDG 450 (1113)
T ss_pred hcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--------------------cceeeccccCCCC
Confidence 4 234678888999976544 4567999999999877666554321 0112345688888
Q ss_pred CEEEEeecCCeEEEEec
Q 048118 284 STLFSGYTDGVIRVWGI 300 (303)
Q Consensus 284 ~~l~~gs~Dg~v~~w~~ 300 (303)
..++....-|-+.+.+.
T Consensus 451 ts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILGT 467 (1113)
T ss_pred ceEecCCCCCceEEecc
Confidence 88887777777777654
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=9.8e-14 Score=117.46 Aligned_cols=237 Identities=16% Similarity=0.236 Sum_probs=143.0
Q ss_pred EEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEe-CCCcEEEE
Q 048118 30 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSAS-RDRTIKLW 108 (303)
Q Consensus 30 ~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~-~d~~i~vw 108 (303)
.+++.+.|+.|.+|++....+ .. ....+ .+.+....++++|++++|+.++ .++.|.+|
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~-l~-~~~~~-------------------~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~ 62 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGA-LT-LLQVV-------------------DVPGQVQPMVISPDKRHLYVGVRPEFRVLSY 62 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCc-ee-eeeEE-------------------ecCCCCccEEECCCCCEEEEEECCCCcEEEE
Confidence 345557789999999953211 00 11111 1223455789999999876654 57889999
Q ss_pred ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-e---eEEEEcCCCCCeeEEEECCCCCEE
Q 048118 109 NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-K---LRATLAGHTGYVNTVAVSPDGSLC 184 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~l 184 (303)
++....................+.++|++. ..+++...++.|.+|++.+. . ....+.+ ......++++|+++++
T Consensus 63 ~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 63 RIADDGALTFAAESPLPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTL 140 (330)
T ss_pred EECCCCceEEeeeecCCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEE
Confidence 875321111111111122356799999863 23333445899999998642 1 2222222 2346778899999988
Q ss_pred EEEe-CCCeEEEEeCCCCceEE-------EecCCCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCC--Cceeeeeeeccc
Q 048118 185 ASGG-KDGVILLWDLAEGKRLY-------SLDAGAVIHALCFSPNRYWLCAAT--EQSIKIWDLES--KSIVEDLKVDLK 252 (303)
Q Consensus 185 ~~~~-~d~~v~iwd~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~--~~~~~~~~~~~~ 252 (303)
+++. .++.|.+||+.+...+. ....+...+.++|+|++.++.++. ++.|.+|+++. +++.....+...
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 220 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM 220 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence 6555 57999999997632221 223345567899999988775553 78999999973 332111111100
Q ss_pred cccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEecc
Q 048118 253 TEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGIG 301 (303)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~~ 301 (303)
+ . ... ...+...+.++|++++|+++. .++.|.+|+++
T Consensus 221 p------~-----~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 221 P------A-----DFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred C------C-----cCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 0 0 000 112334688999999988885 47999999984
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=1.8e-13 Score=118.57 Aligned_cols=241 Identities=36% Similarity=0.601 Sum_probs=168.8
Q ss_pred ceeeeec-CCCCCcEEEEecC-CCcEEEEEccc-CccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 17 MVTAIAT-PIDNSDMIVTASR-DKSIIVWHLTK-EEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 17 ~v~~v~~-~~~~~~~~~t~s~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
.+..+.. .+....+++..+. |+.+++|+... ... . ..+..|...|..++|+|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~------------------~~~~~~~~~v~~~~~~~~~ 167 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL-----I------------------RTLEGHSESVTSLAFSPDG 167 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE-----E------------------EEEecCcccEEEEEECCCC
Confidence 4555555 5554435565555 99999999864 110 0 1345688889999999999
Q ss_pred CEEEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE-EEcCCCCC
Q 048118 94 RQIVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA-TLAGHTGY 171 (303)
Q Consensus 94 ~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~ 171 (303)
..+++++. |+.+++|+...... ......|...+.+++|+|++. ..+++++.|+.|++||...+.... .+..|...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 244 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRTGKP--LSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244 (466)
T ss_pred CEEEecCCCCCceEEEEcCCCce--EEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence 98888885 99999999864222 222234778899999998753 245555999999999988777666 67888776
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEeCCCCce-EEEe-cCCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCceeeeee
Q 048118 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKR-LYSL-DAGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 172 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~~~ 248 (303)
. ...|+|++..+++++.|+.+++|+++.... +... .....+.++.|+|++ .+++.+.++.+.+||.+.........
T Consensus 245 ~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 245 V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 5 448999998889999999999999986654 3333 335788999999965 44455567789999988776554332
Q ss_pred eccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe-ecCCeEEEEeccc
Q 048118 249 VDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG-YTDGVIRVWGIGR 302 (303)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g-s~Dg~v~~w~~~~ 302 (303)
...+...+..+.|.+++..++.+ ..|+.+.+|++..
T Consensus 324 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 324 ------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred ------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 00111134566773343556655 7889999998753
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.2e-15 Score=124.06 Aligned_cols=194 Identities=22% Similarity=0.337 Sum_probs=135.5
Q ss_pred eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEE
Q 048118 19 TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVS 98 (303)
Q Consensus 19 ~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t 98 (303)
..++|+.++ ..++||+.||++|+|+...+.... ....|.++|.++.|+|||+.|++
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l-----------------------~e~~~~~eV~DL~FS~dgk~las 203 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTIL-----------------------EEIAHHAEVKDLDFSPDGKFLAS 203 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhh-----------------------hhHhhcCccccceeCCCCcEEEE
Confidence 467788765 589999999999999976543221 23468899999999999999999
Q ss_pred EeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCC--EEEE-EeCCCcEEEEECCCce------eEEEEcCCC
Q 048118 99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP--TIVS-ASWDRTVKVWNLSNCK------LRATLAGHT 169 (303)
Q Consensus 99 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~-~~~dg~i~iwd~~~~~------~~~~~~~~~ 169 (303)
.+.| ..+||+........-......+.....+.|+.+..+. ++++ ...-+.|+.||+.... ..+.+. ..
T Consensus 204 ig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~ 281 (398)
T KOG0771|consen 204 IGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RF 281 (398)
T ss_pred ecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-cc
Confidence 9999 8999998654221111111223345667787765332 2222 2334567777664321 112222 24
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEE-EEEcCCcEEEEeC
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWL-CAATEQSIKIWDL 238 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~ 238 (303)
..|++++.+++|++++.|+.||.|-|++..+-+.++-++ +...|+.+.|+|+...+ .++++..+.+.-+
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 579999999999999999999999999998888776654 35689999999997555 4556777766654
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=3.3e-15 Score=116.28 Aligned_cols=202 Identities=16% Similarity=0.321 Sum_probs=148.0
Q ss_pred cccCCEEEEEEeeCC-----CEEEEEeCCCcEEEEecCCceeee-e------ecCCCCccceEEEEEcCCCCCCEEEEEe
Q 048118 79 GHTKDVLSVAFSIDN-----RQIVSASRDRTIKLWNTLGECKYT-I------QEGDAHTEWVSCVRFSPNTLQPTIVSAS 146 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~-----~~l~t~~~d~~i~vw~~~~~~~~~-~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 146 (303)
.|.-+++.+-|.|+. .+|||++ ..+|+|.+..+.... . .....+..++++..|+.-. ..++.+.+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence 477788999999876 3566655 469999875321110 0 0112244577888887533 45788999
Q ss_pred CCCcEEEEECCCce---eEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCc---eEEEecC-CCeEEEEEE
Q 048118 147 WDRTVKVWNLSNCK---LRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGK---RLYSLDA-GAVIHALCF 218 (303)
Q Consensus 147 ~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~---~~~~~~~-~~~v~~~~~ 218 (303)
-|-+..|||+.++. ....+..|..+|..++|...+ +.||+.+.||.||++|++..+ .++.-.. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999998763 467788899999999999855 488999999999999998754 3333333 456667888
Q ss_pred cCCC-eEEEE-E-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC-CEEEEeecCCe
Q 048118 219 SPNR-YWLCA-A-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG-STLFSGYTDGV 294 (303)
Q Consensus 219 s~~~-~~l~~-~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~gs~Dg~ 294 (303)
++.. .++|. . ....|.+.|+|.. .++...+++|...++.++|.|.. ..|++++.|--
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P-------------------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVP-------------------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCC-------------------CcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 8865 34443 2 3457888888643 23455678888899999999975 58999999999
Q ss_pred EEEEeccc
Q 048118 295 IRVWGIGR 302 (303)
Q Consensus 295 v~~w~~~~ 302 (303)
+.+||++.
T Consensus 312 aliWDl~q 319 (364)
T KOG0290|consen 312 ALIWDLQQ 319 (364)
T ss_pred EEEEeccc
Confidence 99999964
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=2e-15 Score=126.49 Aligned_cols=165 Identities=21% Similarity=0.367 Sum_probs=128.0
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC-----------
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG----------- 75 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------- 75 (303)
|.+...+|.++|.+-.|+|++. -|+|+|+||.|++|... +..+..+.....+|+++.|.|+.
T Consensus 96 VE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrs------GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~ 168 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRS------GMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHI 168 (737)
T ss_pred hhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEecc------chHHHHHhhcCceeEEEEECCCCCceEEecCCeE
Confidence 3455789999999999999876 58999999999999754 34445555566778888888764
Q ss_pred ------------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118 76 ------------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV 143 (303)
Q Consensus 76 ------------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 143 (303)
++++|.+-|.+++|++...++++|+.|-.-++||..+...+.. .+|..+|++++|+|+. .++
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S---~~~ey~ITSva~npd~---~~~ 242 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS---AAEEYAITSVAFNPEK---DYL 242 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC---Chhccceeeeeecccc---cee
Confidence 3569999999999999999999999999999999876554432 3677889999999983 344
Q ss_pred EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEE
Q 048118 144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196 (303)
Q Consensus 144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iw 196 (303)
.++. .+.| + -....+.|..++|||||..++.|+..|.+.+=
T Consensus 243 v~S~-nt~R---~--------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 243 LWSY-NTAR---F--------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeee-eeee---e--------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 4432 2222 1 12235789999999999999999988887653
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.7e-15 Score=122.08 Aligned_cols=192 Identities=24% Similarity=0.284 Sum_probs=139.1
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118 85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT 164 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 164 (303)
..++|+++|..+++++.||.+|+|+...... +.....|...|.++.|+|++ ..+++.+.| ..++|+.+++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh--hhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEEEeccCchhhh
Confidence 5789999999999999999999999543222 22234567789999999997 468888888 999999988855443
Q ss_pred Ec--CCCCCeeEEEECCCC-----CEEEEEeCCCeEEEEeCCCCc-----eEEE-ecCCCeEEEEEEcCCCeEEEEEc-C
Q 048118 165 LA--GHTGYVNTVAVSPDG-----SLCASGGKDGVILLWDLAEGK-----RLYS-LDAGAVIHALCFSPNRYWLCAAT-E 230 (303)
Q Consensus 165 ~~--~~~~~i~~~~~~~~~-----~~l~~~~~d~~v~iwd~~~~~-----~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~ 230 (303)
.. .-......+.|+.++ ..++....-+.|+.||+..-. +..+ +.....+.+++.+++|.+++.++ +
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 32 122345567787766 233444456677777763211 1111 12245799999999999888765 8
Q ss_pred CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
|.|.+++..+-+.+.-. -+.|...++.+.|+||.+++++-+.|...++..+
T Consensus 303 GsVai~~~~~lq~~~~v-------------------k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYV-------------------KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceeeeeEee-------------------hhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 99999998765554322 2456778999999999999999999999988766
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6.8e-14 Score=123.48 Aligned_cols=167 Identities=20% Similarity=0.303 Sum_probs=124.2
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC--ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG--ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
-|+-.+++.+++|++.+++++..||.|.+|.-.+ ..........=|...|.++.|++++ .++++|+.++.+.+|.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG--AYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC--ceEeecccceEEEEEee
Confidence 4566789999999999999999999999997533 2222222222256779999999987 57999999999999999
Q ss_pred CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec------------CCCeEEEEEEcCC-Ce
Q 048118 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD------------AGAVIHALCFSPN-RY 223 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------------~~~~v~~~~~s~~-~~ 223 (303)
.+++ .+-+.--.++|..+.++||+.+.+....|.+|.+....+.+...+++ .......++++|. +.
T Consensus 281 ~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 281 ETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred cCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 8877 33344446789999999999999999999999998775543322221 1234556788883 55
Q ss_pred EEEEEcCCcEEEEeCCCCceeeeee
Q 048118 224 WLCAATEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 224 ~l~~~~~~~i~iwd~~~~~~~~~~~ 248 (303)
.+..+..+.|.+||+-+.+.+.++.
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEE
Confidence 5566778899999987766665543
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=6.4e-13 Score=106.82 Aligned_cols=156 Identities=25% Similarity=0.448 Sum_probs=116.0
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEE--EeCCCcEEEEECCC
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVS--ASWDRTVKVWNLSN 158 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~dg~i~iwd~~~ 158 (303)
.+|.++.++. ++|+.+-.+. |.|||+...... ++....++...+.+ ++|+....+++. ....|.|.+||..+
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~A--lS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCA--LSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEe--eccCCCCceEEecCCCCCceEEEEEccc
Confidence 4666777654 4677666654 999998653221 12222223333444 445433345554 33468999999999
Q ss_pred ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCe-EEEEeCCCCceEEEecCC---CeEEEEEEcCCCeEEEEE-cCCcE
Q 048118 159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV-ILLWDLAEGKRLYSLDAG---AVIHALCFSPNRYWLCAA-TEQSI 233 (303)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~-~~~~i 233 (303)
-+....+..|.+.+-+++|+|+|.+||++|+.|+ |||+.+.+|+.++.+..+ ..|++++|+|++++|+++ ..+.|
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 9999999999999999999999999999999885 589999999999998654 468999999999888765 46899
Q ss_pred EEEeCCCCc
Q 048118 234 KIWDLESKS 242 (303)
Q Consensus 234 ~iwd~~~~~ 242 (303)
++|.++...
T Consensus 243 HiFKL~~~~ 251 (391)
T KOG2110|consen 243 HIFKLEKVS 251 (391)
T ss_pred EEEEecccc
Confidence 999987544
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.7e-15 Score=127.33 Aligned_cols=184 Identities=23% Similarity=0.374 Sum_probs=137.3
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~ 85 (303)
+=+-++++|.++|.|+++++. .+.+.+|+-||+|+.|++....-. ...+... .-.+.+.||++.|+
T Consensus 335 epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~dp-------~ds~dp~------vl~~~l~Ghtdavw 400 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQDP-------DDSYDPS------VLSGTLLGHTDAVW 400 (577)
T ss_pred eeeEEEecccCceEEEEecCC-ceEEEeeccCceeeeeccCCCCCc-------ccccCcc------hhccceecccccee
Confidence 334579999999999999876 468999999999999987632100 0000000 01357889999999
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEecCCcee--eeee----------------------------------------cCC-
Q 048118 86 SVAFSIDNRQIVSASRDRTIKLWNTLGECK--YTIQ----------------------------------------EGD- 122 (303)
Q Consensus 86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~----------------------------------------~~~- 122 (303)
.+++++...+|++|+.||++++|+...... +... ...
T Consensus 401 ~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s 480 (577)
T KOG0642|consen 401 LLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFES 480 (577)
T ss_pred eeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccc
Confidence 999999999999999999999998532211 0000 000
Q ss_pred ------CCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEE
Q 048118 123 ------AHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196 (303)
Q Consensus 123 ------~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iw 196 (303)
.....+.-+.++|+. ...+++-.|+.|+++|..++++......|...++++++.|+|.+|++++.|+.+++|
T Consensus 481 ~~~~~~~~~~~in~vVs~~~~--~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 481 SASPGPRRYPQINKVVSHPTA--DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLW 558 (577)
T ss_pred cCCCcccccCccceEEecCCC--CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehh
Confidence 001123345566654 467888899999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEE
Q 048118 197 DLAEGKRLY 205 (303)
Q Consensus 197 d~~~~~~~~ 205 (303)
.+...+++.
T Consensus 559 kld~k~~~~ 567 (577)
T KOG0642|consen 559 KLDVKTCVL 567 (577)
T ss_pred hccchheee
Confidence 987665543
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=2e-14 Score=113.29 Aligned_cols=214 Identities=16% Similarity=0.214 Sum_probs=155.8
Q ss_pred cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC-CC
Q 048118 81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SN 158 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~-~~ 158 (303)
..+|+|.+|++++..+|.+-+.+.|.||...+.. .........|...|++++|+|.. +.|++++.|..-++|.. .+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s--nrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS--NRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC--CceeEccCCCCccccccCCC
Confidence 4689999999999999999999999999865543 22333445678889999999975 67999999999999988 44
Q ss_pred ce--eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE-----EEecCCCeEEEEEEcCCCeEEE-EEcC
Q 048118 159 CK--LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL-----YSLDAGAVIHALCFSPNRYWLC-AATE 230 (303)
Q Consensus 159 ~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~-~~~~ 230 (303)
++ ..-.+..++..++++.|+|.++.|++|+.-+.|.||=++..+.- ...+..+.|.++.|+|+.-+++ ++.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 43 33445567889999999999999999999999999987655432 1224467899999999987665 4569
Q ss_pred CcEEEEeCCCCceeeeeeecccccc--ccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 231 QSIKIWDLESKSIVEDLKVDLKTEA--EKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 231 ~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
++.++|.. .++.+.....+.. ...+......+......++..+.|+|+|..|+=-+.|.++.+=|-
T Consensus 168 ~k~rVfSa----yIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 168 GKCRVFSA----YIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred cceeEEEE----eeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 99999864 1222211111000 011111122233344567889999999999999999999877654
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.4e-13 Score=103.56 Aligned_cols=208 Identities=18% Similarity=0.236 Sum_probs=145.9
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
..++|..+|+.+.|. +++|++|+. |.|+-|..+..++...... ..++. .|...-...--+|+++-.
T Consensus 57 ~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~W~E~~es~~~K~---------lwe~~-~P~~~~~~evPeINam~l 122 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWEWNEEEESLATKR---------LWEVK-IPMQVDAVEVPEINAMWL 122 (325)
T ss_pred eccccCCCeeeeeee---hhheeeccC-ceEEEeeehhhhhhccchh---------hhhhc-CccccCcccCCccceeEe
Confidence 568999999999997 456777665 9999998876543211110 00000 000000012236889999
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC
Q 048118 90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT 169 (303)
Q Consensus 90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 169 (303)
.|...-+++++.|+.+.-||+...... ...++|++.+.++.--.. ...+++|+.||++|+||.++++.++.+....
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~--r~~rGHtDYvH~vv~R~~--~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQ--REYRGHTDYVHSVVGRNA--NGQILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEE--EEEcCCcceeeeeeeccc--CcceeecCCCccEEEEeccccceeEEecccc
Confidence 988777777779999999998764332 234689999999976322 2468999999999999999999877664321
Q ss_pred ----------CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118 170 ----------GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLE 239 (303)
Q Consensus 170 ----------~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 239 (303)
..|.+++.+ ...+++| ....+.+|.++..++...++...++..+.|- +..+++++..+.+.-|.+.
T Consensus 199 ~~~~lRp~~g~wigala~~--edWlvCG-gGp~lslwhLrsse~t~vfpipa~v~~v~F~-~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAVN--EDWLVCG-GGPKLSLWHLRSSESTCVFPIPARVHLVDFV-DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ChhhcCcccCceeEEEecc--CceEEec-CCCceeEEeccCCCceEEEecccceeEeeee-cceEEEeccccceeeeeec
Confidence 235555554 4466555 4568999999999999999888999999986 5677777878888888774
No 197
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.7e-15 Score=125.21 Aligned_cols=222 Identities=23% Similarity=0.299 Sum_probs=152.5
Q ss_pred CccceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecc
Q 048118 1 MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGH 80 (303)
Q Consensus 1 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h 80 (303)
|.++|.+...|.||.+=|+++.|+.+ +.+|++||.|-.+.|||.-...+ +.. --+||
T Consensus 36 ~lrrL~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~Kl-----lhs-----------------I~TgH 92 (758)
T KOG1310|consen 36 WLRRLDLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKL-----LHS-----------------ISTGH 92 (758)
T ss_pred HHhhcchhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcce-----eee-----------------eeccc
Confidence 45788899999999999999999976 47999999999999998742110 000 12589
Q ss_pred cCCEEEEEEeeC--CCEEEEEeCCCcEEEEecCCc--------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118 81 TKDVLSVAFSID--NRQIVSASRDRTIKLWNTLGE--------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150 (303)
Q Consensus 81 ~~~i~~i~~~~~--~~~l~t~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~ 150 (303)
++.|.++.|-|. .+++++|..|+.|+++|+... ...+......|...|.-++.-|++ ...+-+++.||.
T Consensus 93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGt 171 (758)
T KOG1310|consen 93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGT 171 (758)
T ss_pred ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcc
Confidence 999999999984 578999999999999998531 111112223455556667777765 347889999999
Q ss_pred EEEEECCCce-eEEE---------EcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCc-----------------
Q 048118 151 VKVWNLSNCK-LRAT---------LAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGK----------------- 202 (303)
Q Consensus 151 i~iwd~~~~~-~~~~---------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~----------------- 202 (303)
|+=||++... +... +...--...++.++|.. .+|++|+.|--.++||.+...
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~ 251 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDC 251 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCccc
Confidence 9999997521 1111 11112346788999955 578999999999999953211
Q ss_pred -eEEEecC-------C---C---eEEEEEEcCCCeE-EEEEcCCcEEEEeCCCCceeee
Q 048118 203 -RLYSLDA-------G---A---VIHALCFSPNRYW-LCAATEQSIKIWDLESKSIVED 246 (303)
Q Consensus 203 -~~~~~~~-------~---~---~v~~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~ 246 (303)
++.-+.. + . .++-+.|+|+|.- |+.-....|+++|+..++-...
T Consensus 252 ~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 252 RCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred chhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 1111110 0 0 1445789999854 4444566899999987665433
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.8e-15 Score=117.68 Aligned_cols=143 Identities=19% Similarity=0.348 Sum_probs=112.2
Q ss_pred CEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC--CCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeE
Q 048118 140 PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP--DGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVI 213 (303)
Q Consensus 140 ~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v 213 (303)
..++++..+|+|++||..+++....++++...++.++|.. ....+.+++.||+|++||+|.......+. .+.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688999999999999999999999999999999999876 34578999999999999999766544332 23466
Q ss_pred EEEEEcCCCeEEEEEc-----CCcEEEEeCCCCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EE
Q 048118 214 HALCFSPNRYWLCAAT-----EQSIKIWDLESKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TL 286 (303)
Q Consensus 214 ~~~~~s~~~~~l~~~~-----~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l 286 (303)
.+++.+..+.++++++ +-.+.+||+|..+. +..+. ..|.--++.+.|+|..+ +|
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-------------------eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-------------------ESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-------------------hhccCcceeEEecCCCCCeE
Confidence 7777766777787764 45799999997665 33221 22344568899999765 89
Q ss_pred EEeecCCeEEEEecc
Q 048118 287 FSGYTDGVIRVWGIG 301 (303)
Q Consensus 287 ~~gs~Dg~v~~w~~~ 301 (303)
++||.||.|.+||+.
T Consensus 182 lSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTK 196 (376)
T ss_pred EeecccceEEeeecC
Confidence 999999999999974
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=7.2e-14 Score=108.26 Aligned_cols=108 Identities=26% Similarity=0.527 Sum_probs=84.3
Q ss_pred CCCeeEEEECCCCCEEEEE--eCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc----CCcEEEEeCCCCc
Q 048118 169 TGYVNTVAVSPDGSLCASG--GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT----EQSIKIWDLESKS 242 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~iwd~~~~~ 242 (303)
.++|.+++|+|+|+.|++. ..++.|.+||++ ++.+..+. ...++.+.|+|+|.+++.+. .|.|.+||.++.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 4579999999999987554 357799999996 66777765 45678899999998777653 4679999999776
Q ss_pred eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec------CCeEEEEec
Q 048118 243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT------DGVIRVWGI 300 (303)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~------Dg~v~~w~~ 300 (303)
.+.... ...++.++|+|+|++|+++.. |+.+++|+.
T Consensus 137 ~i~~~~----------------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 137 KISTFE----------------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred Eeeccc----------------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 654332 112467999999999998875 788999986
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=1.1e-13 Score=107.29 Aligned_cols=117 Identities=23% Similarity=0.424 Sum_probs=89.7
Q ss_pred ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCCC
Q 048118 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAEG 201 (303)
Q Consensus 125 ~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~ 201 (303)
..+|.+++|+|++....++.|..++.|.+||++ .+....+. ...+..+.|+|+|++|++++. .|.+.+||.++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 345999999999754445556677899999996 44455553 467789999999999998874 467999999988
Q ss_pred ceEEEecCCCeEEEEEEcCCCeEEEEEc-------CCcEEEEeCCCCceeee
Q 048118 202 KRLYSLDAGAVIHALCFSPNRYWLCAAT-------EQSIKIWDLESKSIVED 246 (303)
Q Consensus 202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~i~iwd~~~~~~~~~ 246 (303)
+.+.+..... +..++|+|+|.+++++. |+.++||+.. |+++.+
T Consensus 136 ~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 136 KKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 8887776544 67899999998776542 6789999985 444443
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.5e-14 Score=114.93 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=128.7
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC----ceeeee-ecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG----ECKYTI-QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~----~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~ 150 (303)
.+.+|.+-|+++.|+.++++|++|+.|..+++|.... ..-+.+ .....|...|.|+.|+... ..+.+|+.++.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N--~~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN--RFLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--eeEecCCCcce
Confidence 3568999999999999999999999999999998521 111122 2345676789999998754 47889999999
Q ss_pred EEEEECCCceeEEEEcCC--CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc----eEEEecCCCeEEEEEEcCCC--
Q 048118 151 VKVWNLSNCKLRATLAGH--TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK----RLYSLDAGAVIHALCFSPNR-- 222 (303)
Q Consensus 151 i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~s~~~-- 222 (303)
|...|+.+.+.+..+... .+.|..+..+|..+.|++.+.++.|.+||.+..+ ++..-..+...+++-|+|..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 999999988877665532 3589999999999999999999999999998765 22223456678899999985
Q ss_pred eEEEEEcCCcEEEEeCCCC
Q 048118 223 YWLCAATEQSIKIWDLESK 241 (303)
Q Consensus 223 ~~l~~~~~~~i~iwd~~~~ 241 (303)
.+++....+-+.+||.+..
T Consensus 209 Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eEEeccccCCCCceeeccc
Confidence 3444556788999998754
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=1.2e-13 Score=108.90 Aligned_cols=208 Identities=18% Similarity=0.251 Sum_probs=151.3
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
++--.++|+|-+|+++. ..+|.+-+...+-||....... +.+-..+..|...|++++|+
T Consensus 6 ~~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~--------------------w~~~htls~Hd~~vtgvdWa 64 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADL--------------------WEPAHTLSEHDKIVTGVDWA 64 (361)
T ss_pred eeeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCC--------------------ceeceehhhhCcceeEEeec
Confidence 34445789999999875 5789998888999997653220 01112345688899999999
Q ss_pred eCCCEEEEEeCCCcEEEEec-CCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE----EEE
Q 048118 91 IDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR----ATL 165 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~----~~~ 165 (303)
|....|++|+.|..-.||.. .+...........++....++.|+|.. +.|++|+....|.+|-++...-- ..-
T Consensus 65 p~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhik 142 (361)
T KOG1523|consen 65 PKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIK 142 (361)
T ss_pred CCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhC
Confidence 99999999999999999987 333222222223467778999999974 68999999999999877543311 111
Q ss_pred cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeC-----CCC-------------ceEEEe-cCCCeEEEEEEcCCCeEEE
Q 048118 166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL-----AEG-------------KRLYSL-DAGAVIHALCFSPNRYWLC 226 (303)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~-----~~~-------------~~~~~~-~~~~~v~~~~~s~~~~~l~ 226 (303)
+.+...|+++.|+|++-+|+.|+.|+.++|+.. .+. +....+ ..+..++.+.|+|+|..|+
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 234578999999999999999999999999964 111 111222 3456899999999997665
Q ss_pred -EEcCCcEEEEeCCCC
Q 048118 227 -AATEQSIKIWDLESK 241 (303)
Q Consensus 227 -~~~~~~i~iwd~~~~ 241 (303)
++.|..+.+=|....
T Consensus 223 wv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAGP 238 (361)
T ss_pred EecCCCceEEeecCCC
Confidence 567888988876554
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=1.5e-15 Score=133.10 Aligned_cols=116 Identities=30% Similarity=0.546 Sum_probs=99.6
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
++.+|...|+|+.|...|.+++||+.|..++||.... ........+|...|+.++.+.+. ..+++++.|..|++|.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--~~~lAs~rGhs~ditdlavs~~n--~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--ARCLASCRGHSGDITDLAVSSNN--TMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccc--hhhhccCCCCccccchhccchhh--hhhhhcccCceEEEEe
Confidence 3569999999999999999999999999999998533 22334446788889888877653 4678899999999999
Q ss_pred CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC
Q 048118 156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 199 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~ 199 (303)
+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 99999999999999999999999953 77899999999987
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=7.2e-13 Score=119.37 Aligned_cols=245 Identities=15% Similarity=0.223 Sum_probs=154.7
Q ss_pred eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee--CCCE
Q 048118 18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI--DNRQ 95 (303)
Q Consensus 18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~--~~~~ 95 (303)
-..+.++|.. ..++++.....|++||..+.....+ +.... .....|..+.+-. +..+
T Consensus 1067 pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~-----F~n~~---------------~~~t~Vs~l~liNe~D~aL 1125 (1387)
T KOG1517|consen 1067 PKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNG-----FDNGA---------------FPDTRVSDLELINEQDDAL 1125 (1387)
T ss_pred CceeeecCCC-ceeEEcCCcceEEEEecccCceecc-----ccCCC---------------CCCCccceeeeecccchhh
Confidence 3456677765 4677777667999999876543211 11110 1223566777654 4568
Q ss_pred EEEEeCCCcEEEEecCC----ceeeee-----ecCCCC-ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118 96 IVSASRDRTIKLWNTLG----ECKYTI-----QEGDAH-TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL 165 (303)
Q Consensus 96 l~t~~~d~~i~vw~~~~----~~~~~~-----~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 165 (303)
+++|+.||.||||+--. ..+... ...... .+.-.-+.|.... ..++++|.-..|+|||....+....+
T Consensus 1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~--G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS--GHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC--CeEEecCCeeEEEEEecccceeEeec
Confidence 99999999999997421 111110 000000 1111234565543 45777777899999999887766665
Q ss_pred cC-CCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCce---EEEe-cCC--CeEEEEEEcCCC--eEEEEEcCCcEEE
Q 048118 166 AG-HTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKR---LYSL-DAG--AVIHALCFSPNR--YWLCAATEQSIKI 235 (303)
Q Consensus 166 ~~-~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~---~~~~-~~~--~~v~~~~~s~~~--~~l~~~~~~~i~i 235 (303)
.. ....++++.-+. .|..++.|..||.|++||.+...+ +... .+. .+|..+.+.+.| .++.++.+|.|++
T Consensus 1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 43 334567775543 568999999999999999875432 2222 222 237888888864 5778889999999
Q ss_pred EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
||++.......+.+. ... .-+...+++..++..+.+|+|+. +.+.+|+++
T Consensus 1284 ~DlR~~~~e~~~~iv--~~~-------------~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIV--AHW-------------EYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred EecccCcccccceee--ecc-------------ccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 999875222111110 000 00112467888999999999999 999999974
No 205
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.9e-13 Score=113.79 Aligned_cols=265 Identities=16% Similarity=0.229 Sum_probs=172.7
Q ss_pred cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCC--------
Q 048118 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD-------- 74 (303)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 74 (303)
++++++..+. |..+-+.|..+|++.=.+|||-.--.|++||++....++... + ....|....++.+
T Consensus 40 ~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh---l--Dae~V~feiLsDD~SK~v~L~ 113 (703)
T KOG2321|consen 40 QRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH---L--DAEVVDFEILSDDYSKSVFLQ 113 (703)
T ss_pred HHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec---c--cccceeEEEeccchhhheEee
Confidence 4567777776 667888999999876666777778899999998654332111 1 1112222222222
Q ss_pred --CceecccC-------CE----EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE
Q 048118 75 --GQFVGHTK-------DV----LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT 141 (303)
Q Consensus 75 --~~~~~h~~-------~i----~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 141 (303)
....-|.. .| ..++++....=|+.++....|.-.++..... +.........++++..++. +.+
T Consensus 114 ~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~~--hgL 189 (703)
T KOG2321|consen 114 NDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF--LNPFETDSGELNVVSINEE--HGL 189 (703)
T ss_pred cCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc--ccccccccccceeeeecCc--cce
Confidence 11111211 12 2455554443344444444444445432221 2222334466888988875 457
Q ss_pred EEEEeCCCcEEEEECCCceeEEEEc------CCCC-----CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-
Q 048118 142 IVSASWDRTVKVWNLSNCKLRATLA------GHTG-----YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA- 209 (303)
Q Consensus 142 ~~~~~~dg~i~iwd~~~~~~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~- 209 (303)
+++|+.+|.|.+||.+.......+. .|.+ .|+++.|+.+|-.+++|+.+|.+.|+|+++.+++..-.+
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 8889999999999998765444332 2333 499999999999999999999999999999988766544
Q ss_pred -CCeEEEEEEcCC--CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118 210 -GAVIHALCFSPN--RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL 286 (303)
Q Consensus 210 -~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l 286 (303)
..+|..+.|.+. +..+++.....++|||-.+++....+... ..++.+++-|++.++
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt---------------------~~lND~C~~p~sGm~ 328 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT---------------------SDLNDFCFVPGSGMF 328 (703)
T ss_pred CccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc---------------------CCcCceeeecCCceE
Confidence 467888999765 34566666678999999888765443210 113567788999999
Q ss_pred EEeecCCeEEEE
Q 048118 287 FSGYTDGVIRVW 298 (303)
Q Consensus 287 ~~gs~Dg~v~~w 298 (303)
++|..++.+..|
T Consensus 329 f~Ane~~~m~~y 340 (703)
T KOG2321|consen 329 FTANESSKMHTY 340 (703)
T ss_pred EEecCCCcceeE
Confidence 999998887665
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=115.92 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=113.7
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcc-e----EEEEeCCCCceecccCCEEEEEEe
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHF-V----QDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-i----~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
..|+++.|-|.++..|+.+-.+|.+.+++..-...........+..-..+ | +...-+|-.++.--++.|+..+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 57999999998889999999999999997632111110000000000000 0 000002233444456689999999
Q ss_pred eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118 91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG 170 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 170 (303)
|||++||+.+.||.+|||+........+ .+..-....|++|+|++ .++++|+.|.-|.+|.+...+.+..=++|+.
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~--mkSYFGGLLCvcWSPDG--KyIvtGGEDDLVtVwSf~erRVVARGqGHkS 375 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGV--MKSYFGGLLCVCWSPDG--KYIVTGGEDDLVTVWSFEERRVVARGQGHKS 375 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHH--HHhhccceEEEEEcCCc--cEEEecCCcceEEEEEeccceEEEecccccc
Confidence 9999999999999999999865433221 12234568999999997 5899999999999999999888888889999
Q ss_pred CeeEEEEC
Q 048118 171 YVNTVAVS 178 (303)
Q Consensus 171 ~i~~~~~~ 178 (303)
.|+.++|.
T Consensus 376 WVs~VaFD 383 (636)
T KOG2394|consen 376 WVSVVAFD 383 (636)
T ss_pred ceeeEeec
Confidence 99999998
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=9e-14 Score=115.35 Aligned_cols=266 Identities=19% Similarity=0.250 Sum_probs=176.0
Q ss_pred ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118 4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD 83 (303)
Q Consensus 4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~ 83 (303)
++.+-..|..|.+-|+.|.|+.. +..+++||.|..+.+||......+... --+|...
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f----------------------~SGH~~N 187 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSF----------------------ESGHCNN 187 (559)
T ss_pred HhhhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCccccc----------------------ccccccc
Confidence 45566679999999999999966 468999999999999998654322111 1257777
Q ss_pred EEEEEEeeC--CCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118 84 VLSVAFSID--NRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160 (303)
Q Consensus 84 i~~i~~~~~--~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 160 (303)
|....|-|. ...+++++.||.+++=.+.. ...........|.+.|.-++.-|... ..|.+++.|+.+.-+|++...
T Consensus 188 vfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 188 VFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred hhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCC
Confidence 777778775 35799999999999866421 11111223345778888888888753 468899999999999998765
Q ss_pred eEEEEc---CCCC---CeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCce------EEEe-------cCCCeEEEEEEcC
Q 048118 161 LRATLA---GHTG---YVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKR------LYSL-------DAGAVIHALCFSP 220 (303)
Q Consensus 161 ~~~~~~---~~~~---~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~------~~~~-------~~~~~v~~~~~s~ 220 (303)
....+. .+.. ....++..|.. ..+++++.|..+++||.+.-.. +.++ .....|++++|+.
T Consensus 267 pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh 346 (559)
T KOG1334|consen 267 PAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH 346 (559)
T ss_pred ccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC
Confidence 433322 2222 46788899955 4899999999999999865321 1222 1234688999995
Q ss_pred C-CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccc--eeEEEEE-EcCCCCEEEEeecCCeEE
Q 048118 221 N-RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKN--IYCTSLN-WSVDGSTLFSGYTDGVIR 296 (303)
Q Consensus 221 ~-~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~sp~~~~l~~gs~Dg~v~ 296 (303)
+ +.++++-.|-.|++++-..+.- .+. ....+. .... ....++|. ..+..+. |-|...|+++||.-|.|.
T Consensus 347 ~~sElLaSYnDe~IYLF~~~~~~G-~~p-~~~s~~---~~~~--k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF 419 (559)
T KOG1334|consen 347 DGSELLASYNDEDIYLFNKSMGDG-SEP-DPSSPR---EQYV--KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF 419 (559)
T ss_pred CccceeeeecccceEEeccccccC-CCC-CCCcch---hhcc--chhhcccccccccceeeeccCccceEEecCccceEE
Confidence 5 5788888999999995432211 000 000000 0000 00011111 1123334 578889999999999999
Q ss_pred EEec
Q 048118 297 VWGI 300 (303)
Q Consensus 297 ~w~~ 300 (303)
+|+-
T Consensus 420 iW~K 423 (559)
T KOG1334|consen 420 IWDK 423 (559)
T ss_pred EEec
Confidence 9984
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.1e-11 Score=108.33 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=121.6
Q ss_pred ccCCEEEEEEeeCCCEEEEEeC---CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cEEEE
Q 048118 80 HTKDVLSVAFSIDNRQIVSASR---DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TVKVW 154 (303)
Q Consensus 80 h~~~i~~i~~~~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i~iw 154 (303)
+...+...+|+|+|+.|+..+. +..|.+|++.+.....+..... ......|+|++.. .+++.+.+| .|++|
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPDG~~-La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPDGSK-LAFALSKTGSLNLYVM 272 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCCCCE-EEEEEcCCCCcEEEEE
Confidence 4556788999999998876542 3468888876543322222222 2345789999742 333334444 48889
Q ss_pred ECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC-C--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-C
Q 048118 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD-G--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-E 230 (303)
Q Consensus 155 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~ 230 (303)
|+.+++... +..+...+....|+|+|+.|+..+.+ + .|.++|+.+++..............+|+|+|..++... +
T Consensus 273 d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 273 DLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred ECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 998876544 33344567889999999988777654 4 45555766654322222233455688999987765542 2
Q ss_pred ---CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe---EEEEec
Q 048118 231 ---QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV---IRVWGI 300 (303)
Q Consensus 231 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~---v~~w~~ 300 (303)
..|++||+++++.. .+... ....+..|+|||++|+.++.|+. +.++++
T Consensus 352 ~g~~~I~~~dl~~g~~~-~Lt~~---------------------~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 352 GGQQHIAKQDLATGGVQ-VLTDT---------------------FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCCceEEEEECCCCCeE-EeCCC---------------------CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 35889998876532 11100 00123569999999998888875 555554
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=2.9e-12 Score=103.81 Aligned_cols=244 Identities=13% Similarity=0.179 Sum_probs=156.3
Q ss_pred cceeeeecCCC-CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118 16 DMVTAIATPID-NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR 94 (303)
Q Consensus 16 ~~v~~v~~~~~-~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 94 (303)
+.|+.++|..+ ..+.++.++.|..+..+.+...+-.... .++ .....-+++|..+... ..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~------------~~~-----~~~~l~~~~I~gl~~~--dg 116 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL------------DDA-----KTVSLGTKSIKGLKLA--DG 116 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccc------------ccc-----cccccccccccchhhc--CC
Confidence 34555555442 2356666667777777766543211100 000 0112234455555433 34
Q ss_pred EEEEEeCCCcEEEEecCCc-----eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC--CcEEEEECCCceeEEEEcC
Q 048118 95 QIVSASRDRTIKLWNTLGE-----CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD--RTVKVWNLSNCKLRATLAG 167 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d--g~i~iwd~~~~~~~~~~~~ 167 (303)
.|++|-.+|.+.+|..... ........ ..+..+.-++.. ...+++|+.. ..+.+||++..+.+.+-+.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g----~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG----PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC----CceeeeccCCCC-CceEecCchhcccceeeeecccceeeeeccC
Confidence 7888999999999986521 11111111 123344444432 3456678888 8899999987643332221
Q ss_pred CC---------CCeeEEEECCC--CCEEEEEeCCCeEEEEeCCCC-ceEEEecC-CCeEEEEEEcCCCeEEEEE-cCCcE
Q 048118 168 HT---------GYVNTVAVSPD--GSLCASGGKDGVILLWDLAEG-KRLYSLDA-GAVIHALCFSPNRYWLCAA-TEQSI 233 (303)
Q Consensus 168 ~~---------~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i 233 (303)
-. -.++++.|-|. ...|++++.-+++++||.+.+ +++..+.. ..++.++...|++.++.++ +-+.+
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 11 13567888776 789999999999999999854 46666653 6789999999998766554 57899
Q ss_pred EEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 234 KIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
..||++.+++.... +++....+.++.-+|.+++|++++-|..||++|+.+
T Consensus 272 ~~FD~r~~kl~g~~-------------------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCG-------------------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred heecccCceeeccc-------------------cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 99999998876531 222333456788899999999999999999999854
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.4e-11 Score=99.16 Aligned_cols=253 Identities=19% Similarity=0.250 Sum_probs=151.1
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ 95 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 95 (303)
..|++++|.|-+..-|+.|.. +-|+||........ ...++-...+..-| .+..+| .+|++++|+++|..
T Consensus 141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~-~r~~~~~s~~~~qv--------l~~pgh-~pVtsmqwn~dgt~ 209 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA-NRNIRMMSTHHLQV--------LQDPGH-NPVTSMQWNEDGTI 209 (445)
T ss_pred cceeEEEeccCCcceeeeeec-ceeEEEEcCccccc-ccccccccccchhh--------eeCCCC-ceeeEEEEcCCCCE
Confidence 568999999976655666655 56999976532111 11111111111111 123345 58999999999999
Q ss_pred EEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118 96 IVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174 (303)
Q Consensus 96 l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 174 (303)
+++++. |..|+|||........+. ...-..+.-++|+|++ .+++++..|+..++|............-..+.|..
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred EeecccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceee
Confidence 998875 568999998654433332 1234557789999997 47888999999999976543222222233568999
Q ss_pred EEECCCCCEEEEE-eCCCeEEEEeCCCCc----------e---EEEe-----c-----CCCeEEEEEEcCCCeEEEEEcC
Q 048118 175 VAVSPDGSLCASG-GKDGVILLWDLAEGK----------R---LYSL-----D-----AGAVIHALCFSPNRYWLCAATE 230 (303)
Q Consensus 175 ~~~~~~~~~l~~~-~~d~~v~iwd~~~~~----------~---~~~~-----~-----~~~~v~~~~~s~~~~~l~~~~~ 230 (303)
..|+|+|+.|+.+ +..-+++-..+.... . +..+ . ......+++|.|.|.+|++..-
T Consensus 286 acWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 9999999876544 334444332221110 0 0000 0 1346789999999999888753
Q ss_pred C---------cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC---CCCEEEEeecCCeEEEE
Q 048118 231 Q---------SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV---DGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 231 ~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~~~l~~gs~Dg~v~~w 298 (303)
+ .|.+||.+..-.+.-..+... . ..+..-+.|+| ++++|..+=+.|.+.-|
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i---------------~--ge~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMI---------------G--GEYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccc---------------c--CCCCceEEeeecccCCcEEEEEeccCceEee
Confidence 3 366677654433322211110 0 00112345554 56788888888887776
Q ss_pred ec
Q 048118 299 GI 300 (303)
Q Consensus 299 ~~ 300 (303)
++
T Consensus 429 pl 430 (445)
T KOG2139|consen 429 PL 430 (445)
T ss_pred ee
Confidence 65
No 211
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=4.6e-14 Score=108.53 Aligned_cols=168 Identities=24% Similarity=0.381 Sum_probs=122.9
Q ss_pred cceeeeecCCCCC--cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 16 DMVTAIATPIDNS--DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 16 ~~v~~v~~~~~~~--~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
+++.+..+.-..+ -+++.|.++|.+-+||+....+....+. .... ...+..|+++|.++.+.+.-
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-----~~kv--------~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----SSKV--------ESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-----cccc--------ccchhhccCcceeeeechhh
Confidence 4566665443322 3567778899999999986544332211 1111 12356799999999999876
Q ss_pred CEEEEEeCCCcEEEEecCCcee-eeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC
Q 048118 94 RQIVSASRDRTIKLWNTLGECK-YTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 171 (303)
..=++|+.+..+.+|.+..... .++. .....+..+..+..-|++ ..++++++|+.||+|.-++..+...++-|.+.
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~--KIlATAGWD~RiRVyswrtl~pLAVLkyHsag 295 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG--KILATAGWDHRIRVYSWRTLNPLAVLKYHSAG 295 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC--cEEeecccCCcEEEEEeccCCchhhhhhhhcc
Confidence 6778899999999998743211 0100 001123346778888875 57999999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118 172 VNTVAVSPDGSLCASGGKDGVILLWDL 198 (303)
Q Consensus 172 i~~~~~~~~~~~l~~~~~d~~v~iwd~ 198 (303)
|.+++|+|+.+.+|.++.|++|.+|++
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999986
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6.4e-12 Score=111.27 Aligned_cols=202 Identities=21% Similarity=0.327 Sum_probs=141.2
Q ss_pred ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC
Q 048118 13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID 92 (303)
Q Consensus 13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~ 92 (303)
.|.-.+++.+++|. ++++|+|-.||.|.+|.--..+. .+..... +.=|..+|.++.|+++
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~-----------~~~t~t~--------lHWH~~~V~~L~fS~~ 262 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSD-----------DSETCTL--------LHWHHDEVNSLSFSSD 262 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEecccccc-----------ccccceE--------EEecccccceeEEecC
Confidence 36666899999986 57999999999999996422110 0001111 2237889999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC----
Q 048118 93 NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH---- 168 (303)
Q Consensus 93 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~---- 168 (303)
|.+|++||..+.+.+|......+ ++ ...-..+|..+.++|++. ..+....|..|.+....+.....++.+-
T Consensus 263 G~~LlSGG~E~VLv~Wq~~T~~k-qf--LPRLgs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~ 337 (792)
T KOG1963|consen 263 GAYLLSGGREGVLVLWQLETGKK-QF--LPRLGSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPT 337 (792)
T ss_pred CceEeecccceEEEEEeecCCCc-cc--ccccCCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence 99999999999999999755432 11 123356789999999873 4566677999999877555444333321
Q ss_pred -------CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-------C-----CeEEEEEEcCCCeEEEEEc
Q 048118 169 -------TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-------G-----AVIHALCFSPNRYWLCAAT 229 (303)
Q Consensus 169 -------~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~-----~~v~~~~~s~~~~~l~~~~ 229 (303)
.+-.+.++++|.-+.++-.+..|.|++||+.+...++.+.. + -.+..++.+..|.|++...
T Consensus 338 ~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred ccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence 23467789999777888889999999999988777665521 1 1355666666788887652
Q ss_pred ---------C--CcEEEEeCC
Q 048118 230 ---------E--QSIKIWDLE 239 (303)
Q Consensus 230 ---------~--~~i~iwd~~ 239 (303)
+ -.+++|-..
T Consensus 418 ~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 418 ARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred eeehhhhccCceEEEEEEEEc
Confidence 2 247777654
No 213
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=4.7e-13 Score=106.74 Aligned_cols=224 Identities=19% Similarity=0.280 Sum_probs=139.5
Q ss_pred cceeeeecCC-CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEe------------CCCCce-eccc
Q 048118 16 DMVTAIATPI-DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVL------------SSDGQF-VGHT 81 (303)
Q Consensus 16 ~~v~~v~~~~-~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~-~~h~ 81 (303)
+.|+.+.|.+ .+...|+...+|.+|++|.+.....+......+..+....+..+.+ +|...| .+|+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4577788766 4557888899999999999865432211000011111122222211 111112 3688
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCC-----ccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAH-----TEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
--|++|+++.|.+.++++ .|-.|.+|++.- +..+.+...+++ +..|++..|||... +.++..+..|+|++.|
T Consensus 165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCD 242 (433)
T ss_pred eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEee
Confidence 889999999999999876 467788998742 122223222333 34688899999763 5888999999999999
Q ss_pred CCCceeE----EE------------EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC-CCceEEEecC---------
Q 048118 156 LSNCKLR----AT------------LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA-EGKRLYSLDA--------- 209 (303)
Q Consensus 156 ~~~~~~~----~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~--------- 209 (303)
++...+. .. +.+--..|..+.|+++|+++++-. --+|++||+. ..+++.+++.
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 9742210 00 111124688899999999997653 3699999994 4455544431
Q ss_pred ----CCe---EEEEEEcCCCeEEE-EEcCCcEEEEeCCCCc
Q 048118 210 ----GAV---IHALCFSPNRYWLC-AATEQSIKIWDLESKS 242 (303)
Q Consensus 210 ----~~~---v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~ 242 (303)
... --.++|+.++..+. ++..+..++|++..+.
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 111 22367887765554 4557788999965543
No 214
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.53 E-value=1.9e-12 Score=113.61 Aligned_cols=201 Identities=15% Similarity=0.204 Sum_probs=139.2
Q ss_pred cCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCceee----eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 81 TKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECKY----TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 81 ~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
..+|.++.|+|. ..+++.|..+|.|.+||+...... .......|..++..+.|-++.....+++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 457899999995 567888899999999998654331 112234578889999998765545689999999999998
Q ss_pred CCCceeE------EEEc------CCCCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCce----EEE-----ecCCCeE
Q 048118 156 LSNCKLR------ATLA------GHTGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGKR----LYS-----LDAGAVI 213 (303)
Q Consensus 156 ~~~~~~~------~~~~------~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~----~~~-----~~~~~~v 213 (303)
++.-... .... .....+++++|.|. -..|++|+++|.|..-+....+. ++. ..+..+|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7543221 1111 11235789999884 45799999999998855433221 111 1235789
Q ss_pred EEEEEcCCC-eEEEEEcCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEee
Q 048118 214 HALCFSPNR-YWLCAATEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGY 290 (303)
Q Consensus 214 ~~~~~s~~~-~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs 290 (303)
+++.++|-. .++.++.|-.+++|.-. .... ...+.....++++++|||..+ .++++.
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P--------------------l~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP--------------------LLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCc--------------------chhhhhccceeeeeEEcCcCceEEEEEc
Confidence 999999975 34455559999999865 2211 112223334578899999987 577888
Q ss_pred cCCeEEEEecc
Q 048118 291 TDGVIRVWGIG 301 (303)
Q Consensus 291 ~Dg~v~~w~~~ 301 (303)
.||.+.+||+.
T Consensus 462 ~~G~l~iWDLl 472 (555)
T KOG1587|consen 462 GDGNLDIWDLL 472 (555)
T ss_pred CCCceehhhhh
Confidence 89999999984
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=5.9e-11 Score=93.94 Aligned_cols=157 Identities=21% Similarity=0.359 Sum_probs=112.3
Q ss_pred cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeee-cCCCCccceEEEEEcCCCCCCEEEE-EeCCCcEEEEECCC
Q 048118 81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVS-ASWDRTVKVWNLSN 158 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~-~~~dg~i~iwd~~~ 158 (303)
..+|.++.+.++. ++.. ..+.|.||....+.+.... ..........+ ..|.....+++. |-.-|.|++-|+..
T Consensus 94 ~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~--~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 94 NSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS--LCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred ccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe--ecCCCCceEEEcCCCccceEEEEEhhh
Confidence 4678888887663 4433 4577999987644332111 11111122333 334332334544 33458999999976
Q ss_pred cee--EEEEcCCCCCeeEEEECCCCCEEEEEeCCCe-EEEEeCCCCceEEEecC---CCeEEEEEEcCCCeEEEEEcC-C
Q 048118 159 CKL--RATLAGHTGYVNTVAVSPDGSLCASGGKDGV-ILLWDLAEGKRLYSLDA---GAVIHALCFSPNRYWLCAATE-Q 231 (303)
Q Consensus 159 ~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~-~ 231 (303)
.+. ...+..|...|.+++++-+|..+|++|..|+ |||||.++|+.++.+.. ...+++++|||+..+||+++| |
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 654 4678899999999999999999999999986 58999999999988854 467999999999999988775 8
Q ss_pred cEEEEeCCCCc
Q 048118 232 SIKIWDLESKS 242 (303)
Q Consensus 232 ~i~iwd~~~~~ 242 (303)
++++|.++...
T Consensus 249 TlHiF~l~~~~ 259 (346)
T KOG2111|consen 249 TLHIFSLRDTE 259 (346)
T ss_pred eEEEEEeecCC
Confidence 99999987543
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.4e-12 Score=114.12 Aligned_cols=194 Identities=18% Similarity=0.227 Sum_probs=120.1
Q ss_pred ccccccceeeeecCCCCCcEEEEecCC---CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRD---KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+..|...+....|+|++ +.++.++.+ ..|.+|++...... ... .+.+| ....
T Consensus 199 lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~---~l~------------------~~~g~---~~~~ 253 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARK---VVA------------------SFRGH---NGAP 253 (429)
T ss_pred eccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceE---EEe------------------cCCCc---cCce
Confidence 45677788999999986 466766543 36999998643211 000 01122 2357
Q ss_pred EEeeCCCEEEEEe-CCCcEEEE--ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEE
Q 048118 88 AFSIDNRQIVSAS-RDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRA 163 (303)
Q Consensus 88 ~~~~~~~~l~t~~-~d~~i~vw--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~ 163 (303)
+|+|+|++|+.++ .++.+.|| |..+.....+. .+...+....|+|++. ..++++..++..++|++... ....
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~wSpDG~-~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT---SGAGNNTEPSWSPDGQ-SILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec---cCCCCcCCEEECCCCC-EEEEEECCCCCceEEEEECCCCCeE
Confidence 8999999887764 68877776 44333222221 2334467789999873 23444556788888876432 1122
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeC
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDL 238 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~ 238 (303)
.+ .+.. ....|+|+|++|+.++.++ +.+||+.+++..... .........|+|++.+++. +.++.+.+|++
T Consensus 330 ~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 330 LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-STFLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CCCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 22 3333 4578999999998887765 555999887643221 1223356789999976655 45677776664
No 217
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.52 E-value=7.8e-13 Score=113.33 Aligned_cols=212 Identities=18% Similarity=0.258 Sum_probs=145.3
Q ss_pred ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccC-ccccceeeeeecCCCcceEEEEeCCCCceecccC-CE
Q 048118 7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKE-EKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK-DV 84 (303)
Q Consensus 7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~-~i 84 (303)
-++.+.+|.+.|+.+.|+|..+.+|||||.|..++||.+.++ +++. +..+...+|.. .+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------------Sape~~~g~~~~~v 131 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------------SAPEIDVGGGNVIV 131 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------------CCcceeecCCceEE
Confidence 356789999999999999988899999999999999998732 1111 11112233443 46
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC-ceeEE
Q 048118 85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN-CKLRA 163 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~-~~~~~ 163 (303)
-++.|+|...-++..++.+++.+||+... +.......|.+.|.+..|+-++ ..+++.+.|..|+|||.+. +...+
T Consensus 132 E~l~fHpTaDgil~s~a~g~v~i~D~stq--k~~~el~~h~d~vQSa~WseDG--~llatscKdkqirifDPRa~~~piQ 207 (1012)
T KOG1445|consen 132 ECLRFHPTADGILASGAHGSVYITDISTQ--KTAVELSGHTDKVQSADWSEDG--KLLATSCKDKQIRIFDPRASMEPIQ 207 (1012)
T ss_pred EEeecccCcCceEEeccCceEEEEEcccC--ceeecccCCchhhhccccccCC--ceEeeecCCcceEEeCCccCCCccc
Confidence 78999998766666677799999998543 2334446788899999999887 4788999999999999865 45566
Q ss_pred EEcCCCCC-eeEEEECCCCCEEEEEeC----CCeEEEEeCCC-CceEEEe--cCCCeEEEEEEcCCCeEEEEE--cCCcE
Q 048118 164 TLAGHTGY-VNTVAVSPDGSLCASGGK----DGVILLWDLAE-GKRLYSL--DAGAVIHALCFSPNRYWLCAA--TEQSI 233 (303)
Q Consensus 164 ~~~~~~~~-i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~-~~~~~~~--~~~~~v~~~~~s~~~~~l~~~--~~~~i 233 (303)
...+|.+. -..+.|.-+-..|++.+. -+.|++||.+. +.++.++ .....|.---|.||..++..+ .+.+|
T Consensus 208 ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l 287 (1012)
T KOG1445|consen 208 TTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKL 287 (1012)
T ss_pred cccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceE
Confidence 66777643 233555443335554443 35789999875 3444443 333334444578886544433 46778
Q ss_pred EEEeCCCC
Q 048118 234 KIWDLESK 241 (303)
Q Consensus 234 ~iwd~~~~ 241 (303)
+++.+..+
T Consensus 288 ~~lE~~d~ 295 (1012)
T KOG1445|consen 288 FMLEMQDR 295 (1012)
T ss_pred EEEEecCC
Confidence 88887544
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.6e-11 Score=105.55 Aligned_cols=196 Identities=15% Similarity=0.164 Sum_probs=125.1
Q ss_pred ecccCCEEEEEEeeCCCEEEEEeC---CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc--EE
Q 048118 78 VGHTKDVLSVAFSIDNRQIVSASR---DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT--VK 152 (303)
Q Consensus 78 ~~h~~~i~~i~~~~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~--i~ 152 (303)
..|...+...+|+|+|+.|+..+. +..|.+|++.+.....+.. ....+...+|+|++.. .+++.+.++. |.
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~---~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy 273 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN---FPGMTFAPRFSPDGRK-VVMSLSQGGNTDIY 273 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec---CCCcccCcEECCCCCE-EEEEEecCCCceEE
Confidence 456678889999999998887763 4679999986543333321 2334567889998742 3445555655 77
Q ss_pred EEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc
Q 048118 153 VWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT 229 (303)
Q Consensus 153 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 229 (303)
+||+.+++.. .+..+........|+|+|+.|+..+. +| .|.++|+.+++...............|+|++..++...
T Consensus 274 ~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 274 TMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred EEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEE
Confidence 7788776653 35555566678899999998887764 33 68888887654432222234456678999998776543
Q ss_pred --C--CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC-C-----eEEEEe
Q 048118 230 --E--QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-G-----VIRVWG 299 (303)
Q Consensus 230 --~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-g-----~v~~w~ 299 (303)
. ..|.+||+.++.. ..+... .......|+|||++|+..+.+ + .+.+++
T Consensus 353 ~~~~~~~i~~~d~~~~~~-~~lt~~---------------------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGE-RILTSG---------------------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred cCCCceEEEEEECCCCce-EeccCC---------------------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 2 3688888765432 111100 012346799999987755443 2 455556
Q ss_pred c
Q 048118 300 I 300 (303)
Q Consensus 300 ~ 300 (303)
+
T Consensus 411 l 411 (435)
T PRK05137 411 L 411 (435)
T ss_pred C
Confidence 5
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.3e-11 Score=108.14 Aligned_cols=195 Identities=19% Similarity=0.194 Sum_probs=122.9
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cEEE
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TVKV 153 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i~i 153 (303)
.+...+...+|+|+|+.++..+.+ ..|.+|++.+.....+... .....+.+|+|++.. .+++.+.+| .|++
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~---~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF---RGINGAPSFSPDGRR-LALTLSRDGNPEIYV 276 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC---CCCccCceECCCCCE-EEEEEeCCCCceEEE
Confidence 455678889999999988877643 4688999865433333221 223446889998742 334555555 5999
Q ss_pred EECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CCe--EEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-
Q 048118 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DGV--ILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT- 229 (303)
Q Consensus 154 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 229 (303)
||+.+++.. .+..+.......+|+|+|+.|+.++. +|. |.++|+.+++.......+......+|+|++..++...
T Consensus 277 ~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 277 MDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred EECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEC
Confidence 999877653 34445555677899999998887764 444 6667776665322212233344689999998776543
Q ss_pred C---CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC-C--eEEEEec
Q 048118 230 E---QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-G--VIRVWGI 300 (303)
Q Consensus 230 ~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-g--~v~~w~~ 300 (303)
+ ..|++||+.+++.. .+... .......|+|+|++|+..+.+ | .+.++++
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt~~---------------------~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLTPG---------------------SLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECCCC---------------------CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 2 25999999776543 11100 001235799999987766553 3 4555554
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=7e-13 Score=107.29 Aligned_cols=186 Identities=16% Similarity=0.270 Sum_probs=140.6
Q ss_pred ceeeeecCCCCCcEEEEecCC--CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE--EEEEEeeC
Q 048118 17 MVTAIATPIDNSDMIVTASRD--KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV--LSVAFSID 92 (303)
Q Consensus 17 ~v~~v~~~~~~~~~~~t~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i--~~i~~~~~ 92 (303)
.+..+.-.+..+.++++||.. ..+++||+....+.+... .++ ..+.+-.-+| .++.|-+.
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK--Nvp--------------nD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK--NVP--------------NDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc--CCC--------------CccccceeeeeeccceecCC
Confidence 455666777778889999999 899999997653322110 000 0111122233 45778777
Q ss_pred --CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE-EcCCC
Q 048118 93 --NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LAGHT 169 (303)
Q Consensus 93 --~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~~~~~ 169 (303)
...|+|+..-+.+|+||... .+.++...+....++.++...|.+ ..+++|...|.+..||++.++.... +.+..
T Consensus 214 ~~~~~fat~T~~hqvR~YDt~~-qRRPV~~fd~~E~~is~~~l~p~g--n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 214 SPNYKFATITRYHQVRLYDTRH-QRRPVAQFDFLENPISSTGLTPSG--NFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred CCCceEEEEecceeEEEecCcc-cCcceeEeccccCcceeeeecCCC--cEEEEecccchhheecccCceeeccccCCcc
Confidence 77899999999999999864 334444455567789999999976 5788999999999999999887665 88889
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCC
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN 221 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~ 221 (303)
+.|.++..+|.++++++++.|+.|||+|+.+.+.++..-..+..+.+-+.++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 9999999999999999999999999999999877766655566677767654
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=1e-13 Score=114.44 Aligned_cols=207 Identities=16% Similarity=0.238 Sum_probs=147.5
Q ss_pred eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEE------------------eCCCCc---e
Q 048118 19 TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVV------------------LSSDGQ---F 77 (303)
Q Consensus 19 ~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~------------------~~~~~~---~ 77 (303)
+.+.+..+ +++++.|+.-|.|..+|..+....... .-...|.++. +...|. +
T Consensus 133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei------~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHC 205 (545)
T KOG1272|consen 133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEI------NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHC 205 (545)
T ss_pred eeeeecCC-ccEEEecCCccceeeeecccceeeeee------ehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEee
Confidence 45566644 568888999999999997643211000 0001112222 222221 1
Q ss_pred ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118 78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS 157 (303)
Q Consensus 78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~ 157 (303)
.....+|..+.|.|..-+|++++..|.++.-|+..... +.........+..++-+|- ...+-.|...|+|-+|...
T Consensus 206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl--Va~~~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL--VASIRTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred hhhcCchhhhcccchhheeeecccCCceEEEeechhhh--hHHHHccCCccchhhcCCc--cceEEEcCCCceEEecCCC
Confidence 22345788899999999999999999999888743211 1111222334555666664 3467789999999999998
Q ss_pred CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEe
Q 048118 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWD 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd 237 (303)
..+++..+..|.++|.++++.++|++++|++.|..++|||++....+.+.........+++|.. .+||++....+.+|-
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqk-glLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQK-GLLALSYGDHVQIWK 360 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccc-cceeeecCCeeeeeh
Confidence 8888888889999999999999999999999999999999998887777766677788888854 467778888999995
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=9.8e-12 Score=99.94 Aligned_cols=193 Identities=16% Similarity=0.281 Sum_probs=129.7
Q ss_pred eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC-CEE
Q 048118 18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN-RQI 96 (303)
Q Consensus 18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~-~~l 96 (303)
+-.++|++. -.-||.+.+|.+|++|+-...+.. .++. .-...|.+++|-|.+ +-|
T Consensus 101 lr~~aWhqH-~~~fava~nddvVriy~ksst~pt------~Lks-----------------~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 101 LRGVAWHQH-IIAFAVATNDDVVRIYDKSSTCPT------KLKS-----------------VSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred eeeEeechh-hhhhhhhccCcEEEEeccCCCCCc------eecc-----------------hhhcceeEEEeccCCccee
Confidence 446788874 346889999999999986542211 0000 012478999999964 567
Q ss_pred EEEeCCCcEEEEecCCc----e--------eeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-CCcEEEEECCCceeEE
Q 048118 97 VSASRDRTIKLWNTLGE----C--------KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-DRTVKVWNLSNCKLRA 163 (303)
Q Consensus 97 ~t~~~d~~i~vw~~~~~----~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-dg~i~iwd~~~~~~~~ 163 (303)
+.|+..| |.+|..... . ...+....+ ..+|.+++|++++. .+++++. +..|.+||..++....
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCC-CceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccc
Confidence 7777755 889975211 0 011222223 36799999999874 5666654 6789999998876544
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC-CceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE-GKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL 238 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~ 238 (303)
-..-.-+.++-+.||||+.+|..++-|+..++|+... -....-.-....|...+|+|.|.+|..+..+.=.+|.+
T Consensus 233 L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 233 LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 3323456788999999999999999999999996543 22222233345899999999997665555555555554
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.1e-11 Score=105.48 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=116.2
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
.+...+.+.+|+|+|+.++..+.+ ..|.+||+.+.....+... ...+.+..|+|++. ..+++.+.++...+|.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~---~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF---KGSNSAPAWSPDGR-TLAVALSRDGNSQIYT 268 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC---CCCccceEECCCCC-EEEEEEccCCCceEEE
Confidence 455677889999999988877643 3588999865433333221 22345789999873 2334567778766664
Q ss_pred --CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeC--CCCceEEEecCCCeEEEEEEcCCCeEEEEEc-
Q 048118 156 --LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DGVILLWDL--AEGKRLYSLDAGAVIHALCFSPNRYWLCAAT- 229 (303)
Q Consensus 156 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 229 (303)
+.++. ...+..+........|+|||+.|+..+. ++...+|.+ .+++..............+|+|+|.+++...
T Consensus 269 ~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 269 VNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 44444 3445545555677899999998876654 456666654 4443221111223334578999998776543
Q ss_pred CC---cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118 230 EQ---SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 230 ~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg 293 (303)
++ .|++||+.+++... +... .......|+|||++|+.++.++
T Consensus 348 ~~g~~~I~v~d~~~g~~~~-lt~~---------------------~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTA-LTDT---------------------TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred cCCcEEEEEEECCCCCeEE-ccCC---------------------CCccCceECCCCCEEEEEEecC
Confidence 22 59999998765421 1100 0012367999999887766544
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=2.6e-12 Score=102.06 Aligned_cols=209 Identities=17% Similarity=0.209 Sum_probs=128.3
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118 86 SVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL 165 (303)
Q Consensus 86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 165 (303)
-++|+|+|+++|+++.- .+.+-|..+-+.... -..-..|.-+-|..+.. ..+.....++.|++|++...+...++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql---f~cldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL---FLCLDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH---HHHHHHhhheeeeccce-eeeeeeeccceEEEEEeecceeEEEe
Confidence 46899999999998775 566666533211110 01122345566776653 24555677889999999888877888
Q ss_pred cCCCCCeeEEEECCCCCEEEE-EeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCc----EEEEeCCC
Q 048118 166 AGHTGYVNTVAVSPDGSLCAS-GGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQS----IKIWDLES 240 (303)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~----i~iwd~~~ 240 (303)
.....++.+++|||+|++++. ..-|-+|.+|.+.+......--....+..++|+|+|++.+..+... +.+..-+.
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 888889999999999976654 5568999999998766544333344567889999999887765321 11111111
Q ss_pred Cceeeeeeeccccc--cccccCcccee----ecc------ccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 241 KSIVEDLKVDLKTE--AEKSEATTATT----TIK------KKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 241 ~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~------~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
-.++++.+.+.... .+-.+...... .+. .....+..++|+|.+.+|++|+.|+.+|+-+
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 12222222211110 00000000000 000 0123456789999999999999999998753
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.47 E-value=8.9e-12 Score=99.57 Aligned_cols=271 Identities=17% Similarity=0.283 Sum_probs=166.0
Q ss_pred cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee---cccCCEEEEEEe
Q 048118 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV---GHTKDVLSVAFS 90 (303)
Q Consensus 14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~h~~~i~~i~~~ 90 (303)
..+-|.+|-|+-. +++|+||..+|-+-++.-.+..+.--.....++.|. |+..|. .-...|+.|.|.
T Consensus 24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe---------pEFDYLkSleieEKinkIrw~ 93 (433)
T KOG1354|consen 24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE---------PEFDYLKSLEIEEKINKIRWL 93 (433)
T ss_pred hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccC---------cccchhhhhhhhhhhhhceec
Confidence 3466888888865 579999999999999976533220000111122221 111111 234568899999
Q ss_pred eCCC--EEEEEeCCCcEEEEecCCceeee----------------------------------eecCCCCccceEEEEEc
Q 048118 91 IDNR--QIVSASRDRTIKLWNTLGECKYT----------------------------------IQEGDAHTEWVSCVRFS 134 (303)
Q Consensus 91 ~~~~--~l~t~~~d~~i~vw~~~~~~~~~----------------------------------~~~~~~~~~~i~~~~~~ 134 (303)
+++. .++..+.|++|++|.+....... -....+|+--|.++.++
T Consensus 94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 8764 67888999999999753211000 00123466667888888
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCce-e--EEEEcCCC-----CCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCce--
Q 048118 135 PNTLQPTIVSASWDRTVKVWNLSNCK-L--RATLAGHT-----GYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGKR-- 203 (303)
Q Consensus 135 ~~~~~~~~~~~~~dg~i~iwd~~~~~-~--~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~-- 203 (303)
.+. ..+++ ..|=.|.+|.+.--. . ...++.++ .-|++..|+|. .+.|+-.+..|+|++.|++....
T Consensus 174 sD~--Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 174 SDK--ETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred Ccc--ceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 764 23443 467778899875321 1 12223332 45888999994 46788888999999999984321
Q ss_pred ----EEEec-----------CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC-CCceeeeeeeccccccccccCccceeec
Q 048118 204 ----LYSLD-----------AGAVIHALCFSPNRYWLCAATEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTI 267 (303)
Q Consensus 204 ----~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (303)
+...+ .-+.|..+.|++.|.++.+-.--.|++||+. ..+.+..+.++-.........--....+
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 11111 1135888999999999988888999999983 4444444443211100000000000000
Q ss_pred cccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 268 KKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 268 ~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
-=..++|+.++.+++|||..+..++|++++
T Consensus 331 -----dKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 331 -----DKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred -----heeEEEEcCCcceEecccccceEEEecCCC
Confidence 014578999999999999999999999653
No 226
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.46 E-value=3.7e-11 Score=96.06 Aligned_cols=228 Identities=20% Similarity=0.351 Sum_probs=140.8
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcc-c---------------cceeeee-ecC-CCcceE
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEK-T---------------YGVARRR-LTG-HSHFVQ 67 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~-~---------------~~~~~~~-~~~-~~~~i~ 67 (303)
.+...++||.+.|+....-|.. +-+++.+.|.++|+|.-....+ . +....+. +.+ ....+.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 5666799999999988776654 5699999999999995422110 0 0000000 001 122344
Q ss_pred EEEeCCC-------CceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCC
Q 048118 68 DVVLSSD-------GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP 140 (303)
Q Consensus 68 ~~~~~~~-------~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 140 (303)
....+.+ ..+..|...|..+-|+...+++++.+.|+.+.--......... .+. ..+.+-.++-...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg-----~Y~--~~~~~t~~~~d~~ 166 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG-----GYN--FETPASALQFDAL 166 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc-----ceE--eeccCCCCceeeE
Confidence 4444433 2467899999999999999999999999876432222211100 000 0000000000000
Q ss_pred EEEEEeCCCcEEEEEC--CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE--EecCCCeEEEE
Q 048118 141 TIVSASWDRTVKVWNL--SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY--SLDAGAVIHAL 216 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~ 216 (303)
+...|...|.|..-.+ ..-.+..++.+|.+.+.+++|.|..+.|.+|..|..+.+||+..++.+. .......|+.+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 2233444444444333 3445678899999999999999999999999999999999997544322 12234566666
Q ss_pred EEcCC-CeEEEEEcCCcEEEEeCCCC
Q 048118 217 CFSPN-RYWLCAATEQSIKIWDLESK 241 (303)
Q Consensus 217 ~~s~~-~~~l~~~~~~~i~iwd~~~~ 241 (303)
+.-+. ..+++++.||.|.+||++..
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccce
Confidence 65544 46677888999999998654
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.43 E-value=1.1e-11 Score=104.42 Aligned_cols=138 Identities=17% Similarity=0.319 Sum_probs=108.0
Q ss_pred cCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCC-----c---------eeeeeecCC------------CCccceEEEEE
Q 048118 81 TKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLG-----E---------CKYTIQEGD------------AHTEWVSCVRF 133 (303)
Q Consensus 81 ~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~-----~---------~~~~~~~~~------------~~~~~i~~~~~ 133 (303)
+..++++.|-|.+ ..++..-.++.+.++|..- . ..+.+...+ .....|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 3689999999865 4677777889999996421 0 011110000 11235677899
Q ss_pred cCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCe
Q 048118 134 SPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAV 212 (303)
Q Consensus 134 ~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~ 212 (303)
+|++ ..+++.+.||.+||||..+++++..++..-+...+++|||||+++++|++|--|.||.+..++.+..-+ +.++
T Consensus 299 S~DG--~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW 376 (636)
T KOG2394|consen 299 SPDG--KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW 376 (636)
T ss_pred cCCC--ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc
Confidence 9976 579999999999999999988887777777899999999999999999999999999999888776654 5689
Q ss_pred EEEEEEcC
Q 048118 213 IHALCFSP 220 (303)
Q Consensus 213 v~~~~~s~ 220 (303)
|..++|.|
T Consensus 377 Vs~VaFDp 384 (636)
T KOG2394|consen 377 VSVVAFDP 384 (636)
T ss_pred eeeEeecc
Confidence 99999987
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=1.1e-11 Score=111.59 Aligned_cols=194 Identities=18% Similarity=0.293 Sum_probs=138.9
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEE--EEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCV--RFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~ 161 (303)
|....+..+...++....++.+.+||.................-..++ -++++ .-++++|+.-+.|.+|+....+.
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccCC
Confidence 334455556677888888899999997543322111100000111122 23333 34788899999999999874443
Q ss_pred EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE--EecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118 162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY--SLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLE 239 (303)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 239 (303)
...+.+|.+.|.++.++.+|+++++.|.|+++++|++.+.+.+. -+.+...+.+++|.|. .+++++.|...++|+.+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVN 246 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecc
Confidence 34688999999999999999999999999999999999877654 3456788999999998 77788899999999764
Q ss_pred CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
. ..+..++.+. .-.++.++..+....++|++.||.+++|++
T Consensus 247 ~-~~l~~y~~h~-------------------g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 247 G-TQLEVYDEHS-------------------GKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred c-ceehhhhhhh-------------------hcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 3 3222222211 123467888889999999999999999987
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1e-10 Score=102.58 Aligned_cols=199 Identities=19% Similarity=0.181 Sum_probs=120.1
Q ss_pred ccccccceeeeecCCCCCcEEEEecC---CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASR---DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+..|...+....|+|++. .|+..+. +..|.+|++...... .+ ..+.+.....
T Consensus 199 lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~------~l------------------~~~~g~~~~~ 253 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRE------LV------------------ASFRGINGAP 253 (433)
T ss_pred eecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEE------Ee------------------ccCCCCccCc
Confidence 444566788889999864 6666653 346888887543211 00 1112233467
Q ss_pred EEeeCCCEEE-EEeCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE-eCCCc--EEEEECCCcee
Q 048118 88 AFSIDNRQIV-SASRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA-SWDRT--VKVWNLSNCKL 161 (303)
Q Consensus 88 ~~~~~~~~l~-t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~dg~--i~iwd~~~~~~ 161 (303)
+|+|+|+.++ +.+.++ .|.+|+..+.....+. .+.......+|+|++. .++.. ..+|. |.++|+.+++.
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt---~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT---NHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeEECc---cCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCe
Confidence 8999998765 445555 4888887654332222 2222345678999873 34443 34555 66667766554
Q ss_pred EEEEcCCCCCeeEEEECCCCCEEEEEeCCC---eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc----CCcEE
Q 048118 162 RATLAGHTGYVNTVAVSPDGSLCASGGKDG---VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT----EQSIK 234 (303)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~ 234 (303)
.. +..+.......+|+|+|++++..+.++ .|.+||+.+++.. .+..........|+|++.+++... .+.|+
T Consensus 329 ~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~ 406 (433)
T PRK04922 329 ER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLA 406 (433)
T ss_pred EE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 32 222223445689999999987765433 6999999877643 333333345678999997665543 24588
Q ss_pred EEeCCCC
Q 048118 235 IWDLESK 241 (303)
Q Consensus 235 iwd~~~~ 241 (303)
++++..+
T Consensus 407 ~~~~~g~ 413 (433)
T PRK04922 407 AVSTDGR 413 (433)
T ss_pred EEECCCC
Confidence 8888543
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=6.6e-10 Score=97.29 Aligned_cols=188 Identities=21% Similarity=0.217 Sum_probs=118.3
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cEEE
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TVKV 153 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i~i 153 (303)
.+...+...+|+|+|++++.+..+ ..|.+|++.+.....+.. ....+.+.+|+|++. ..+++.+.++ .|++
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~---~~~~~~~~~~spDg~-~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS---FPGMNGAPAFSPDGS-KLAVSLSKDGNPDIYV 262 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---CCCCccceEECCCCC-EEEEEECCCCCccEEE
Confidence 344567788899999998877654 478899986543222221 223355688999873 2334444444 5888
Q ss_pred EECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-
Q 048118 154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT- 229 (303)
Q Consensus 154 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 229 (303)
||+.+++.. .+..+........|+|+++.|+..+. ++ .|.++|+.+++...............|+|++.+++...
T Consensus 263 ~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 263 MDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred EECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc
Confidence 898776543 34444445567789999998876654 33 68888887765432222344566788999987666554
Q ss_pred CC---cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118 230 EQ---SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 230 ~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg 293 (303)
++ .|++||+.++... .+... . ......|+|++++|+..+.++
T Consensus 342 ~~~~~~i~~~d~~~~~~~-~l~~~------------------~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGER-VLTDT------------------G---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred cCCceEEEEEeCCCCCeE-EccCC------------------C---CCCCceECCCCCEEEEEEeCC
Confidence 33 6899998764321 11100 0 011246899999888777765
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.38 E-value=2.3e-10 Score=91.13 Aligned_cols=242 Identities=22% Similarity=0.297 Sum_probs=156.0
Q ss_pred cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee---------------
Q 048118 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV--------------- 78 (303)
Q Consensus 14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------------- 78 (303)
..+.+..++|+|++..++.|..-|-.|.+|.+.... ...++.....+.-+++.++++|-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccce------eEEecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 345677899999988888898889999999986422 11223334445666777777642
Q ss_pred ------------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe
Q 048118 79 ------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS 146 (303)
Q Consensus 79 ------------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 146 (303)
--+-..+.+.|+|+|..++ +||..-+.+ +... .....+..+.|+|.+ ..++.|+
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leyk--v~aY-e~~lG~k~v~wsP~~--qflavGs 229 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYK--VYAY-ERGLGLKFVEWSPCN--QFLAVGS 229 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhhe--eeee-eeccceeEEEecccc--ceEEeec
Confidence 2233567889999987765 565321111 1000 112347788999964 4789999
Q ss_pred CCCcEEEEECCCcee------------------------------------------------------------EEEEc
Q 048118 147 WDRTVKVWNLSNCKL------------------------------------------------------------RATLA 166 (303)
Q Consensus 147 ~dg~i~iwd~~~~~~------------------------------------------------------------~~~~~ 166 (303)
.|+.+|+-+-.+.+. ...++
T Consensus 230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk 309 (447)
T KOG4497|consen 230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK 309 (447)
T ss_pred cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence 999887653111000 00000
Q ss_pred ------CCCCCeeEEEECCCCCEEEEEeC--CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEe
Q 048118 167 ------GHTGYVNTVAVSPDGSLCASGGK--DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWD 237 (303)
Q Consensus 167 ------~~~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd 237 (303)
.....+.-++|++|..++++-.. -..+-+||++..+.-..+....+|+...|.|...-|+.++ ..++++|-
T Consensus 310 p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 310 PPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred CCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 11224567899999988887643 2578899998765444445568899999999986555554 55799998
Q ss_pred CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118 238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR 296 (303)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~ 296 (303)
......+.. ...+..+..+.|.-+|..++..+.|....
T Consensus 390 psg~~~V~v---------------------P~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 390 PSGPRVVGV---------------------PKKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred CCCceEEec---------------------CCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 765443321 11224456788999999999998887543
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=5.7e-11 Score=100.91 Aligned_cols=164 Identities=20% Similarity=0.307 Sum_probs=114.5
Q ss_pred cccCCEEEEEEeeCCCEE-EEEeCCCcEEEEecCCceeee------------eecCC--------------CC-------
Q 048118 79 GHTKDVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYT------------IQEGD--------------AH------- 124 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l-~t~~~d~~i~vw~~~~~~~~~------------~~~~~--------------~~------- 124 (303)
.+...-+.|..+|||+|+ +||..--.|++||+.....+. +...+ .|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 455667789999999975 566677789999964321110 00000 00
Q ss_pred ccce----EEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 048118 125 TEWV----SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 200 (303)
Q Consensus 125 ~~~i----~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 200 (303)
...| ..++++.-. ..+..++....|+-+++..+..+..+....+.++++.+++...+|++|+.+|.|..||.+.
T Consensus 129 ~~RIP~~GRDm~y~~~s--cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPS--CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeecCcCCccccccCCC--ccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 0001 112222111 1355566667788888888888777777778999999999999999999999999999998
Q ss_pred CceEEEecCC------------CeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCcee
Q 048118 201 GKRLYSLDAG------------AVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIV 244 (303)
Q Consensus 201 ~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~ 244 (303)
...+.++... ..|+++.|+.+|..++++ +.|.+.|||+++.+.+
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence 8776665432 248999999989877665 5899999999987654
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=1.3e-10 Score=91.14 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=115.7
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-CceeE
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-NCKLR 162 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-~~~~~ 162 (303)
-.++.|++.+..++++..+|.+.+-+.........+..+.|.....-..|+... .+.+.+|+.|+.+..||++ .++..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-CceEEecCCCceEEEEEecCCccee
Confidence 457889999999999999999985554333333344456777777777887643 3578899999999999998 33333
Q ss_pred EE-EcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCC-CCceEEEecCCCeEEEEEEcCCC--eEEEEEcCCcEEEEe
Q 048118 163 AT-LAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLA-EGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQSIKIWD 237 (303)
Q Consensus 163 ~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd 237 (303)
.. .+-|...|.++.-+| .+.++++|+.|-.|++||.+ -++++..-.....|..+..+|.- .+++++..+-.++-+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 32 445778898988887 56799999999999999998 56777766667789999999863 456666665566666
Q ss_pred CCCC
Q 048118 238 LESK 241 (303)
Q Consensus 238 ~~~~ 241 (303)
....
T Consensus 283 ~~~~ 286 (339)
T KOG0280|consen 283 SSDK 286 (339)
T ss_pred eccc
Confidence 5443
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.35 E-value=4.1e-10 Score=89.28 Aligned_cols=171 Identities=18% Similarity=0.315 Sum_probs=114.8
Q ss_pred CcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeEEEECC-
Q 048118 103 RTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNTVAVSP- 179 (303)
Q Consensus 103 ~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~- 179 (303)
+.|.|||-.. .+...+. -..+|.++++.++. ++. -.++.|.+|...++ +....+....++=--+++.|
T Consensus 75 NkviIWDD~k~~~i~el~----f~~~I~~V~l~r~r----iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS----FNSEIKAVKLRRDR----IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred ceEEEEecccCcEEEEEE----eccceeeEEEcCCe----EEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 5799998432 2222221 24568899998762 333 35788999998643 34444433222222334444
Q ss_pred -CCCEEEE-EeCCCeEEEEeCCCCce---EEEecCCCeEEEEEEcCCCeEEEEEc-CC-cEEEEeCCCCceeeeeeeccc
Q 048118 180 -DGSLCAS-GGKDGVILLWDLAEGKR---LYSLDAGAVIHALCFSPNRYWLCAAT-EQ-SIKIWDLESKSIVEDLKVDLK 252 (303)
Q Consensus 180 -~~~~l~~-~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~-~~-~i~iwd~~~~~~~~~~~~~~~ 252 (303)
+..+|+. |-.-|+|+|-|+...+. ..-..+.+.|.+++.+-+|.++|+++ .| -|+|||.+++.++.+++--
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-- 223 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-- 223 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--
Confidence 3334544 44679999999976544 22234578899999999999888765 44 4999999999998876521
Q ss_pred cccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 253 TEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
.....+.+++|||+..+||++|+-|+|++|.+
T Consensus 224 ----------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 224 ----------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred ----------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 11223567999999999999999999999976
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=2.8e-08 Score=84.58 Aligned_cols=245 Identities=14% Similarity=0.233 Sum_probs=143.7
Q ss_pred eeeeecCCCCCcEEEEecC----CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 18 VTAIATPIDNSDMIVTASR----DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 18 v~~v~~~~~~~~~~~t~s~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
..-+.++|++. +|.++.. ++.|..|++......... +.. ..........++++|++
T Consensus 39 Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~-----------~~~--------~~~~g~~p~~i~~~~~g 98 (345)
T PF10282_consen 39 PSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTL-----------LNS--------VPSGGSSPCHIAVDPDG 98 (345)
T ss_dssp ECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEE-----------EEE--------EEESSSCEEEEEECTTS
T ss_pred CceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEE-----------eee--------eccCCCCcEEEEEecCC
Confidence 45567777654 4554444 568888887654211111 010 01122345678899999
Q ss_pred CEEEEEe-CCCcEEEEecCCcee--ee--eecC--------CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118 94 RQIVSAS-RDRTIKLWNTLGECK--YT--IQEG--------DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160 (303)
Q Consensus 94 ~~l~t~~-~d~~i~vw~~~~~~~--~~--~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 160 (303)
++++++. .++.|.++++..... .. .... ........++.++|++. ..+++.-....|++|++....
T Consensus 99 ~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 99 RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-FVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-EEEEEETTTTEEEEEEE-TTS
T ss_pred CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC-EEEEEecCCCEEEEEEEeCCC
Confidence 9888876 488999998754211 11 1100 01123467899999863 244444445689999986544
Q ss_pred --eE--EEEcC-CCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCC--CCc--eEEEec-------CCCeEEEEEEcCCCe
Q 048118 161 --LR--ATLAG-HTGYVNTVAVSPDGSLCASGG-KDGVILLWDLA--EGK--RLYSLD-------AGAVIHALCFSPNRY 223 (303)
Q Consensus 161 --~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~--~~~--~~~~~~-------~~~~v~~~~~s~~~~ 223 (303)
+. ..+.. ....-..+.|+|+++++.+.. .+++|.++++. .+. .+..+. .......++++|++.
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence 32 22222 224567899999999875554 58899999987 332 222221 122577899999998
Q ss_pred EEEEEc--CCcEEEEeCC--CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEE
Q 048118 224 WLCAAT--EQSIKIWDLE--SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVW 298 (303)
Q Consensus 224 ~l~~~~--~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w 298 (303)
+|.++. .+.|.+|+++ ++++.. +.. ..........++++|+|++|++++ .++.|.+|
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~-~~~-----------------~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTL-VQT-----------------VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEE-EEE-----------------EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEEEeccCCEEEEEEEecCCCceEE-EEE-----------------EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 776654 6789999983 233321 111 001112346789999999988776 67799999
Q ss_pred ecc
Q 048118 299 GIG 301 (303)
Q Consensus 299 ~~~ 301 (303)
+++
T Consensus 320 ~~d 322 (345)
T PF10282_consen 320 DID 322 (345)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=9e-10 Score=96.33 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=116.0
Q ss_pred ccccceeeeecCCCCCcEEEEec---CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 13 AHTDMVTAIATPIDNSDMIVTAS---RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 13 ~h~~~v~~v~~~~~~~~~~~t~s---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
.+.+.+....|+|++. .|+..+ .+..|.+|++..++.. .+ ....+.+....|
T Consensus 196 ~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~------~l------------------~~~~~~~~~~~~ 250 (429)
T PRK03629 196 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVR------QV------------------ASFPRHNGAPAF 250 (429)
T ss_pred cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeE------Ec------------------cCCCCCcCCeEE
Confidence 3455678899999875 455433 2346888887543211 00 001122235789
Q ss_pred eeCCCEEEEE-eCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCCcEEEE--ECCCceeEE
Q 048118 90 SIDNRQIVSA-SRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDRTVKVW--NLSNCKLRA 163 (303)
Q Consensus 90 ~~~~~~l~t~-~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg~i~iw--d~~~~~~~~ 163 (303)
+|+|+.|+.. +.++ .|.+||..+.....+.. +...+....|+|++. .++..+ .++..++| |+.+++..
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~---~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~- 324 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD---GRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQ- 324 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC---CCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeE-
Confidence 9999987754 4444 47788876543322221 223456789999873 454444 34555555 66655433
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCC---CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-CC---cEEEE
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKD---GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQ---SIKIW 236 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~---~i~iw 236 (303)
.+...........|+|+|++++..+.+ ..|.+||+.+++.. .+..........|+|||.+++.++ ++ .++++
T Consensus 325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 325 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 333333445678999999998776543 35888999877542 333222334678999997665543 43 37777
Q ss_pred eCCCC
Q 048118 237 DLESK 241 (303)
Q Consensus 237 d~~~~ 241 (303)
++..+
T Consensus 404 ~~~G~ 408 (429)
T PRK03629 404 STDGR 408 (429)
T ss_pred ECCCC
Confidence 87543
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=8.4e-10 Score=96.94 Aligned_cols=200 Identities=17% Similarity=0.150 Sum_probs=124.1
Q ss_pred ccccccceeeeecCCCCCcEEEEecC---CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASR---DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+..|...+....|+|++. .|+..+. +..|.+|++...... .+..+.+.+...
T Consensus 197 lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~------------------------~l~~~~g~~~~~ 251 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE------------------------LVGNFPGMTFAP 251 (435)
T ss_pred EecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE------------------------EeecCCCcccCc
Confidence 455667888999999865 5665543 468999988643211 011234456678
Q ss_pred EEeeCCCEEE-EEeCCCc--EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCC--cEEEEECCCcee
Q 048118 88 AFSIDNRQIV-SASRDRT--IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDR--TVKVWNLSNCKL 161 (303)
Q Consensus 88 ~~~~~~~~l~-t~~~d~~--i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg--~i~iwd~~~~~~ 161 (303)
+|+|+|+.++ +.+.++. |.+||..+.....+. .+........|+|++. .++..+ .+| .|+++|+.+++.
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt---~~~~~~~~~~~spDG~--~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLT---DSPAIDTSPSYSPDGS--QIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCceEEcc---CCCCccCceeEcCCCC--EEEEEECCCCCCeEEEEECCCCCe
Confidence 8999998765 5566665 555576544332222 1233345688999873 344333 333 577788876654
Q ss_pred EEEEcCCCCCeeEEEECCCCCEEEEEeCC---CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--C-----C
Q 048118 162 RATLAGHTGYVNTVAVSPDGSLCASGGKD---GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--E-----Q 231 (303)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~-----~ 231 (303)
.. +..+...+....|+|+|+.|+..+.+ ..|.+||+.++.. ..+.....+....|+|++..++... . .
T Consensus 327 ~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 327 RR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred EE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 33 33334556678899999998876543 3688888765432 3333333466789999987765432 1 3
Q ss_pred cEEEEeCCCCc
Q 048118 232 SIKIWDLESKS 242 (303)
Q Consensus 232 ~i~iwd~~~~~ 242 (303)
.++++|+..+.
T Consensus 405 ~L~~~dl~g~~ 415 (435)
T PRK05137 405 KLYTVDLTGRN 415 (435)
T ss_pred eEEEEECCCCc
Confidence 58888886554
No 238
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.9e-11 Score=103.64 Aligned_cols=176 Identities=24% Similarity=0.450 Sum_probs=122.0
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
.+.||...|-.++-- ++++-|+++|.|.++++|.+.+.....+. + .-+..|..|+.+|+++.|
T Consensus 730 nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~t------------s----aCQfTY~aHkk~i~~igf 792 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGT------------S----ACQFTYQAHKKPIHDIGF 792 (1034)
T ss_pred cccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCcccc------------c----eeeeEhhhccCcccceee
Confidence 478999888887633 55678999999999999998653211110 0 012357889999999999
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCc-eeeeeecCCCC--ccceEEEEEcCCCCCCEEEE-EeCCCcEEEEECCCceeEEEE
Q 048118 90 SIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAH--TEWVSCVRFSPNTLQPTIVS-ASWDRTVKVWNLSNCKLRATL 165 (303)
Q Consensus 90 ~~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~-~~~dg~i~iwd~~~~~~~~~~ 165 (303)
-.+.++++++ |+.|.+||..-. ...++.....+ ...|.|+ ++.....++. ++...+|+++|.+......++
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~ 867 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCEL 867 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeE
Confidence 9999888765 678999996322 11112111111 2234444 4322233444 477899999999887765554
Q ss_pred c-----CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe
Q 048118 166 A-----GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 207 (303)
Q Consensus 166 ~-----~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 207 (303)
+ +.+.-+.+++..|.|+.++.+-..|.+.+.|.++|+.+..+
T Consensus 868 kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 868 KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 3 23455789999999999999999999999999999877654
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=5e-10 Score=97.97 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=116.8
Q ss_pred cccccceeeeecCCCCCcEEEEecCC---CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118 12 RAHTDMVTAIATPIDNSDMIVTASRD---KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88 (303)
Q Consensus 12 ~~h~~~v~~v~~~~~~~~~~~t~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~ 88 (303)
..+.+.+...+|+|++. .|+..+.+ ..|.+||+..+... .+ ....+.+....
T Consensus 192 ~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~------~l------------------~~~~g~~~~~~ 246 (427)
T PRK02889 192 LSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRR------VV------------------ANFKGSNSAPA 246 (427)
T ss_pred ccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEE------Ee------------------ecCCCCccceE
Confidence 45667788899999864 56655432 35888988643211 00 11123345788
Q ss_pred EeeCCCEEE-EEeCCCcEEEEec--CCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC--CCceeEE
Q 048118 89 FSIDNRQIV-SASRDRTIKLWNT--LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL--SNCKLRA 163 (303)
Q Consensus 89 ~~~~~~~l~-t~~~d~~i~vw~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~--~~~~~~~ 163 (303)
|+|+|+.++ +.+.++...||.. .+.....+. .+........|+|++.. .+++...++...+|.+ .+++...
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT---QSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCcEECC---CCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCceEE
Confidence 999998776 5677888777754 322222221 12223456789998742 3334444566666654 4443322
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCC---eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--CC--cEEEE
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDG---VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--EQ--SIKIW 236 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~--~i~iw 236 (303)
+...........|+|+|++++..+.++ .|.+||+.+++.. .+..........|+|++..++.+. .+ .+++.
T Consensus 323 -lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 323 -VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred -EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence 221223344678999999998776554 6999999877643 333233346778999987665543 22 35666
Q ss_pred eCC
Q 048118 237 DLE 239 (303)
Q Consensus 237 d~~ 239 (303)
++.
T Consensus 401 ~~~ 403 (427)
T PRK02889 401 SSD 403 (427)
T ss_pred ECC
Confidence 653
No 240
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=2.4e-11 Score=115.02 Aligned_cols=197 Identities=20% Similarity=0.342 Sum_probs=140.6
Q ss_pred cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
+-+.|.++.-+|.. .+-+||+.||.+++|......+ |.+. +..|. ..|+.+.|+.+|
T Consensus 2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~---------------v~~~------rt~g~-s~vtr~~f~~qG 2263 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQ---------------VVCF------RTAGN-SRVTRSRFNHQG 2263 (2439)
T ss_pred ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCe---------------EEEe------eccCc-chhhhhhhcccC
Confidence 33556777777765 4789999999999998753221 1111 11233 678899999999
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE---eCCCcEEEEECCCce-eEEEEcCCC
Q 048118 94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA---SWDRTVKVWNLSNCK-LRATLAGHT 169 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~dg~i~iwd~~~~~-~~~~~~~~~ 169 (303)
..+..+..||.+.+|..... .......|+.......|--. .++++ ..++.+.+||..... ....-..|.
T Consensus 2264 nk~~i~d~dg~l~l~q~~pk---~~~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2264 NKFGIVDGDGDLSLWQASPK---PYTSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred CceeeeccCCceeecccCCc---ceeccccCCccccceeeeeh----hhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 99999999999999997532 22233456666666666432 24443 346889999964321 111126799
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeee
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~ 248 (303)
+.++++++-|..+.|++|+.+|.|++||++..+.+++++. +.....++..+..|.|+||++....++....
T Consensus 2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999999999999999999999998888777664 3334566677789999999998776665443
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.1e-09 Score=93.36 Aligned_cols=162 Identities=17% Similarity=0.130 Sum_probs=103.1
Q ss_pred eecccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cE
Q 048118 77 FVGHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TV 151 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i 151 (303)
+..+...+....|+|+|+.|+..+.+ ..|.+|++.+.....+... ...+....|+|++.. .+++...+| .|
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 34566678889999999988776643 3577888765433322221 122446889998732 333444454 58
Q ss_pred EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE
Q 048118 152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA 228 (303)
Q Consensus 152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 228 (303)
.++|+.+++.. .+..+........|+|+|+.++..+. ++ .|.++|+.+++...............|+|++..++..
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88899877654 34445556677899999998776654 33 6777888776643222222233456899998777655
Q ss_pred c--CC--cEEEEeCCCCce
Q 048118 229 T--EQ--SIKIWDLESKSI 243 (303)
Q Consensus 229 ~--~~--~i~iwd~~~~~~ 243 (303)
. ++ .|++||+.+++.
T Consensus 349 ~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EccCCceEEEEEECCCCCE
Confidence 3 22 588999887653
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=7.1e-11 Score=106.57 Aligned_cols=145 Identities=29% Similarity=0.453 Sum_probs=117.9
Q ss_pred CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEE
Q 048118 27 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIK 106 (303)
Q Consensus 27 ~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~ 106 (303)
.+-++++|+.-+.|.+|+....++. ..+.+|++.|.++.++.+|+++++++.|.++|
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p-----------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiR 200 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKP-----------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIR 200 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCc-----------------------ceecccCCceEEEEEccCCcEEEEEecCccee
Confidence 4578999999999999987632210 14578999999999999999999999999999
Q ss_pred EEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC-CCeeEEEECCCCCEEE
Q 048118 107 LWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT-GYVNTVAVSPDGSLCA 185 (303)
Q Consensus 107 vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~ 185 (303)
+|++.+.+... -..-.|+..+..++|+|+ .+++++.|-+.++|+.+..+ ..++.+|. ..+..++..++....+
T Consensus 201 lW~i~s~~~~~-~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~v 274 (967)
T KOG0974|consen 201 LWPIDSREVLG-CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKV 274 (967)
T ss_pred eeecccccccC-cccccccceeEEEEeccc----eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCceEEE
Confidence 99986543322 123468889999999986 69999999999999875444 44777776 4689999999888899
Q ss_pred EEeCCCeEEEEeCCC
Q 048118 186 SGGKDGVILLWDLAE 200 (303)
Q Consensus 186 ~~~~d~~v~iwd~~~ 200 (303)
+++.|+.+++|++..
T Consensus 275 T~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 275 TGGNDSTLKLWDLNG 289 (967)
T ss_pred eeccCcchhhhhhhc
Confidence 999999999999854
No 243
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=6.7e-11 Score=98.61 Aligned_cols=249 Identities=16% Similarity=0.192 Sum_probs=165.3
Q ss_pred ccccccceeeeecCC-CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 11 MRAHTDMVTAIATPI-DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~-~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
--+|...|....|-| .+...+++++.||.+++=.+....... ....+..|.++|+.++.
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e--------------------~t~rl~~h~g~vhklav 240 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVE--------------------NTKRLAPHEGPVHKLAV 240 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeecccccee--------------------cceecccccCccceeee
Confidence 346777787776766 345789999999999987664321110 01234568999999999
Q ss_pred eeCC-CEEEEEeCCCcEEEEecCCce-eeeeecCCCCcc---ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee---
Q 048118 90 SIDN-RQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTE---WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL--- 161 (303)
Q Consensus 90 ~~~~-~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~--- 161 (303)
-|+. .-|.+++.|+.+.-.|+.... ...+.....+.. ....++.+|... ..+++++.|..+++||.+.-..
T Consensus 241 ~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~ 319 (559)
T KOG1334|consen 241 EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN 319 (559)
T ss_pred cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc
Confidence 9875 569999999999988864321 111111112222 457788888653 4789999999999999754221
Q ss_pred ---EEEEcC------CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------eEEE-ec---CCCeEEEE
Q 048118 162 ---RATLAG------HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK------------RLYS-LD---AGAVIHAL 216 (303)
Q Consensus 162 ---~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~------------~~~~-~~---~~~~v~~~ 216 (303)
+.++.. ..-.|++++++.++.-|+++-.|-.|++++-.-+. .+.. +. ....|..+
T Consensus 320 n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV 399 (559)
T KOG1334|consen 320 NGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV 399 (559)
T ss_pred cchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee
Confidence 122221 12358999999877777777778889998532211 1111 11 11246666
Q ss_pred EE-cCCCeEEEEEcC-CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe
Q 048118 217 CF-SPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV 294 (303)
Q Consensus 217 ~~-s~~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~ 294 (303)
-| -|...++++++| |.|.||+-.+++++.-++- ....|++|.-+|--+.||+++-|.-
T Consensus 400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg--------------------Dr~VVNCLEpHP~~PvLAsSGid~D 459 (559)
T KOG1334|consen 400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG--------------------DRHVVNCLEPHPHLPVLASSGIDHD 459 (559)
T ss_pred eeccCccceEEecCccceEEEEecchhHHHHHhhc--------------------ccceEeccCCCCCCchhhccCCccc
Confidence 55 455566666654 8999999998887654432 2336788888999999999999999
Q ss_pred EEEEec
Q 048118 295 IRVWGI 300 (303)
Q Consensus 295 v~~w~~ 300 (303)
|+||-.
T Consensus 460 VKIWTP 465 (559)
T KOG1334|consen 460 VKIWTP 465 (559)
T ss_pred eeeecC
Confidence 999954
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.1e-09 Score=93.37 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=139.9
Q ss_pred CCCcEEEEecCCCcEEEEEcccCccccce-eeeeecCCCcceEEEEeC--CCCceecccCCEEEEE----EeeCCCEEEE
Q 048118 26 DNSDMIVTASRDKSIIVWHLTKEEKTYGV-ARRRLTGHSHFVQDVVLS--SDGQFVGHTKDVLSVA----FSIDNRQIVS 98 (303)
Q Consensus 26 ~~~~~~~t~s~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~--~~~~~~~h~~~i~~i~----~~~~~~~l~t 98 (303)
+...+||....||.+|+|+.+.+.....+ +.+.+. +.-.++.|. .+... -...+.. -+.+...++-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s---~t~~~~~w~L~~~~s~----~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS---GTCTYTKWGLSADYSP----MKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhcc---CcceeEEEEEEeccch----HHHHhHHHHhhccCCceEEEe
Confidence 34579999999999999998765422111 111111 111111111 00000 0000110 1223446778
Q ss_pred EeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEEC
Q 048118 99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS 178 (303)
Q Consensus 99 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 178 (303)
|..-|.|.+|+..+.........+.|.+.|.++.++.+- ..+.+++.|..+..|+....+....+...+..+.+++++
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS 153 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEc
Confidence 888899999998765554444556788889999888764 478899999999999999998888888888889999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCC-----Ce-EEEEE-cCCcEEEEeCCC
Q 048118 179 PDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPN-----RY-WLCAA-TEQSIKIWDLES 240 (303)
Q Consensus 179 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~-----~~-~l~~~-~~~~i~iwd~~~ 240 (303)
||+..+++++ ++|++||+++++.+.+|.. .++|++++|-.. |. +|.+. .+.-|.+|-++.
T Consensus 154 ~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 154 PDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999886 5899999999999988864 678999988665 43 44332 345577776654
No 245
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.27 E-value=7.8e-10 Score=101.72 Aligned_cols=168 Identities=20% Similarity=0.265 Sum_probs=113.6
Q ss_pred ecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceee-----eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118 78 VGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKY-----TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV 151 (303)
Q Consensus 78 ~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i 151 (303)
..|+..+..++.++.. .+|+||+.||+||+|+...-... ...........+.++.+-+.+ ..++.++.||.|
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--DQFAVSTKDGSV 1122 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--CeEEEEcCCCeE
Confidence 3577788888888765 99999999999999997432111 111111234456777776665 358888999999
Q ss_pred EEEECCCce-------eEEEEcCC-CCCeeEE-EECC-CCC-EEEEEeCCCeEEEEeCCCCceEEEec---CCCeEEEEE
Q 048118 152 KVWNLSNCK-------LRATLAGH-TGYVNTV-AVSP-DGS-LCASGGKDGVILLWDLAEGKRLYSLD---AGAVIHALC 217 (303)
Q Consensus 152 ~iwd~~~~~-------~~~~~~~~-~~~i~~~-~~~~-~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~ 217 (303)
++.++.-.. .......+ .+.+.++ ++.. .+. .++.+..-+.|..||.+....+++.+ ..+.|.+++
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 999885411 11111112 2333333 3333 223 56777788999999999877666553 346899999
Q ss_pred EcCCCeEEEEEc-CCcEEEEeCCCCceeeee
Q 048118 218 FSPNRYWLCAAT-EQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 218 ~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~ 247 (303)
.+|.+.|++.++ .|.+-+||+|-+..+...
T Consensus 1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred ecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 999999998775 789999999877665443
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=7.1e-09 Score=91.15 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=97.7
Q ss_pred ccCCEEEEEEeeCCCEEEEEeC-CC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc--EEEE
Q 048118 80 HTKDVLSVAFSIDNRQIVSASR-DR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT--VKVW 154 (303)
Q Consensus 80 h~~~i~~i~~~~~~~~l~t~~~-d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~--i~iw 154 (303)
+...+....|+|+|+.++..+. ++ .|.+||+.+.....+.... .......|+|++. ..+++.+.++. |.++
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~-~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGK-KLALVLSKDGQPEIYVV 291 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCC-EEEEEEeCCCCeEEEEE
Confidence 3446678899999998876654 33 4777787543322222211 1234678999874 23444566665 7777
Q ss_pred ECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--
Q 048118 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-- 229 (303)
Q Consensus 155 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 229 (303)
|+.+++.. .+..+........|+|+|+.|+..+. ++ .|.++|+.+++..............+|+|++..++...
T Consensus 292 dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 292 DIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 88776643 34444556677899999998876653 33 56667887665432211222234568999987665543
Q ss_pred CC--cEEEEeCCCCce
Q 048118 230 EQ--SIKIWDLESKSI 243 (303)
Q Consensus 230 ~~--~i~iwd~~~~~~ 243 (303)
++ .|+++|+.+++.
T Consensus 371 ~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 371 NGKFNIARQDLETGAM 386 (448)
T ss_pred CCceEEEEEECCCCCe
Confidence 23 567778877653
No 247
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.23 E-value=3.3e-11 Score=99.87 Aligned_cols=193 Identities=15% Similarity=0.192 Sum_probs=144.0
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR 162 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~ 162 (303)
..+.+.+..+|.+++.|+.-|+|-.+|........-. .-.+.|..+.|-.+. .+++......++|||-. +...
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---~v~Etv~Dv~~LHne---q~~AVAQK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---NVMETVRDVTFLHNE---QFFAVAQKKYVYVYDNN-GTEL 203 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeee---ehhhhhhhhhhhcch---HHHHhhhhceEEEecCC-CcEE
Confidence 3467899999999999999999999987543222111 123457778886653 34556788999999964 4444
Q ss_pred EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCC
Q 048118 163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA-TEQSIKIWDLES 240 (303)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~ 240 (303)
.-++.| ..|..+.|-|-.-+|++++..|.++.-|+..|+.+..+.. ...+..++-+|-.-++..+ +.|.|.+|....
T Consensus 204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 445543 5788899999888889999999999999999998877754 3466677778876666544 689999998766
Q ss_pred CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118 241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~ 303 (303)
.+.+-. +-.|...+.++++.++|.|++|.+.|..++|||+-.|
T Consensus 283 kePLvK--------------------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 283 KEPLVK--------------------ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred cchHHH--------------------HHhcCCCcceEEECCCCcEEeecccccceeEeeeccc
Confidence 544322 2234556788999999999999999999999998543
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=4.9e-09 Score=89.61 Aligned_cols=189 Identities=19% Similarity=0.250 Sum_probs=131.3
Q ss_pred eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCC-ccceEEEEE------cCC------------CCCCEEEEEeCCCcE
Q 048118 91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAH-TEWVSCVRF------SPN------------TLQPTIVSASWDRTV 151 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~i~~~~~------~~~------------~~~~~~~~~~~dg~i 151 (303)
|...++|....||.+|+|+...+...+-.....+ ++.-.+..| +|. .....++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456899999999999999765433221100001 111122222 221 112356778889999
Q ss_pred EEEECCCceeEEEEc--CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEE
Q 048118 152 KVWNLSNCKLRATLA--GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA 228 (303)
Q Consensus 152 ~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 228 (303)
.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|++...+.+..+.. ...+.+++.+||+..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999887775 5889999999998888999999999999999999888777654 4578899999998776655
Q ss_pred cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC-----CCEEE-EeecCCeEEEEec
Q 048118 229 TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-----GSTLF-SGYTDGVIRVWGI 300 (303)
Q Consensus 229 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-----~~~l~-~gs~Dg~v~~w~~ 300 (303)
+ ++|.+||+++++++... .+|...+..+.|... |.+++ +...+.-+.+|-+
T Consensus 163 s-~~ik~~~~~~kevv~~f--------------------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 163 S-RQIKVLDIETKEVVITF--------------------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred c-ceEEEEEccCceEEEEe--------------------cCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 4 69999999999887654 334444555665544 55544 4445555666644
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.18 E-value=8.4e-09 Score=87.95 Aligned_cols=108 Identities=21% Similarity=0.295 Sum_probs=83.5
Q ss_pred EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCC
Q 048118 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN 221 (303)
Q Consensus 142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~ 221 (303)
+++-..++.|.+.|..+.+...++......-..+.++|||+++.+++.||.|.++|+.+++.+.++..+.....+++|+|
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence 34556789999999999998888876544445578999999999999999999999999999999998888999999999
Q ss_pred CeEEEEE--cCCcEEEEeCCCCceeeeeee
Q 048118 222 RYWLCAA--TEQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 222 ~~~l~~~--~~~~i~iwd~~~~~~~~~~~~ 249 (303)
|.+++++ ..+.+.++|.++.+.++.+..
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred CCEEEEEecCCCceeEeccccccceeeccc
Confidence 9877665 479999999999888877653
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.5e-08 Score=86.21 Aligned_cols=127 Identities=21% Similarity=0.413 Sum_probs=91.8
Q ss_pred CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE--eCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEE
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG--GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLC 226 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 226 (303)
.++++.+.++..+...+. ..++|.++.|+|+++.|+++ --=..+.++|++ +.++..+. ..+-+++-|+|.|.+++
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIIL 327 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEE
Confidence 357777776444444443 36899999999999887654 235688999986 45555554 45667788999998776
Q ss_pred EEc----CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec------CCeEE
Q 048118 227 AAT----EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT------DGVIR 296 (303)
Q Consensus 227 ~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~------Dg~v~ 296 (303)
.+. .|.|.+||+.+.+++...+.. ..+-..|+|||.+++|+.. |+.++
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i~~~~a~----------------------~tt~~eW~PdGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLIAKFKAA----------------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred EeecCCCCCceEEEeccchhhccccccC----------------------CceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence 553 478999999988777654321 1244789999999998865 78889
Q ss_pred EEec
Q 048118 297 VWGI 300 (303)
Q Consensus 297 ~w~~ 300 (303)
+|+.
T Consensus 386 iwhy 389 (566)
T KOG2315|consen 386 IWHY 389 (566)
T ss_pred EEEe
Confidence 9976
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.17 E-value=2.4e-07 Score=79.15 Aligned_cols=190 Identities=19% Similarity=0.189 Sum_probs=118.3
Q ss_pred EEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEec
Q 048118 31 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT 110 (303)
Q Consensus 31 ~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~ 110 (303)
+++-..++.|.+.|....+.. ..+ ......-..+.++|+|+++++++.|+.|.++|+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~-----~~i------------------~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVV-----ARI------------------PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDL 65 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEE-----EEE------------------E-STTEEEEEE-TT-SSEEEEEETTSEEEEEET
T ss_pred EEEecCCCEEEEEECCCCeEE-----EEE------------------cCCCCceeEEEecCCCCEEEEEcCCCeEEEEEC
Confidence 356677899999997653321 111 111111234678999999999999999999998
Q ss_pred CCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC-------CCCeeEEEECCCCC
Q 048118 111 LGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH-------TGYVNTVAVSPDGS 182 (303)
Q Consensus 111 ~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~ 182 (303)
...... .+.. . ....++++++++. ..+++....+.+.++|.++.+.+..+... ...+..+..+|...
T Consensus 66 ~~~~~v~~i~~---G-~~~~~i~~s~DG~-~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 66 ATGKVVATIKV---G-GNPRGIAVSPDGK-YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp TSSSEEEEEE----S-SEEEEEEE--TTT-EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred CcccEEEEEec---C-CCcceEEEcCCCC-EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC
Confidence 654332 2222 1 2357799999873 23445567899999999998887766432 34577788888888
Q ss_pred EEEEEeC-CCeEEEEeCCCCceE--EEecCCCeEEEEEEcCCCeEEEE--EcCCcEEEEeCCCCceeeeee
Q 048118 183 LCASGGK-DGVILLWDLAEGKRL--YSLDAGAVIHALCFSPNRYWLCA--ATEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 183 ~l~~~~~-d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~--~~~~~i~iwd~~~~~~~~~~~ 248 (303)
.++..-. .+.|-+.|......+ ..+..+.......|+|++.++.+ ...+.|-++|.++++++..+.
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 6666655 488888887655433 44556677888999999855433 346789999999887775543
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.14 E-value=2.4e-08 Score=87.46 Aligned_cols=171 Identities=22% Similarity=0.280 Sum_probs=106.0
Q ss_pred cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC---CcEEEEECCCceeEEEEcCCCCCeeEEEECCC
Q 048118 104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD---RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD 180 (303)
Q Consensus 104 ~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 180 (303)
.|.++|..+.....+. .+...+...+|+|++. .++....+ ..|++||+.+++... +..+.+.+..++|+|+
T Consensus 171 ~l~~~d~~g~~~~~l~---~~~~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTIT---RSREPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEee---cCCCceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 4667776443222222 1334577788999873 45554433 479999998775433 3334556677899999
Q ss_pred CCEEEE-EeCCC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC----CcEEEEeCCCCceeeeeeecccc
Q 048118 181 GSLCAS-GGKDG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE----QSIKIWDLESKSIVEDLKVDLKT 253 (303)
Q Consensus 181 ~~~l~~-~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~ 253 (303)
++.|+. .+.++ .|.+||+.+++...............|+|++..++..++ ..|+++|+++++... +..
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---- 319 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---- 319 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec----
Confidence 987764 44444 588899887654322222233445689999876654432 268888887654321 110
Q ss_pred ccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC---eEEEEecc
Q 048118 254 EAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG---VIRVWGIG 301 (303)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg---~v~~w~~~ 301 (303)
.........|+|++++|+.++.++ .|.+||+.
T Consensus 320 ----------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 320 ----------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred ----------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 011224568999999999888776 77788764
No 253
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-09 Score=90.82 Aligned_cols=215 Identities=18% Similarity=0.181 Sum_probs=144.2
Q ss_pred cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118 12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI 91 (303)
Q Consensus 12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~ 91 (303)
-.|++.|+.+... ..+++++++.||.+++|.-...+ +.. ++ ..+.+|.+.|.+++.+.
T Consensus 6 ymhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~is---GvE-------------fV----KhFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 6 YMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRIS---GVE-------------FV----KHFRAHLGVILSLAVSY 63 (558)
T ss_pred hcccceeeeEeee--hhheEEeeecchhhhhcCCCCcc---cee-------------eh----hhhHHHHHHHHhhhccc
Confidence 4699999998654 45799999999999999653211 000 00 24667889999999999
Q ss_pred CCCEEEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEE-EEEeCCCcEEEEECCCce--eEEEEcC
Q 048118 92 DNRQIVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTI-VSASWDRTVKVWNLSNCK--LRATLAG 167 (303)
Q Consensus 92 ~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~dg~i~iwd~~~~~--~~~~~~~ 167 (303)
++-++.|.+. |+.++++|+..-..........-...+ +...+|......+ ++.-.++.+.++|-.... ....-.-
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 9999999777 999999997532211111101011111 2222333211223 334457889999976543 2333345
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC------CceEEEe----------cCCCeEEEEEEcCCCeEE-EEEcC
Q 048118 168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE------GKRLYSL----------DAGAVIHALCFSPNRYWL-CAATE 230 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~------~~~~~~~----------~~~~~v~~~~~s~~~~~l-~~~~~ 230 (303)
|..+|..+.++|.+..+++....|.|.-|.... .+..... .......++.|+|++..+ ..+.|
T Consensus 143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred ccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 889999999999999999988899999998863 1111111 123456789999998655 45678
Q ss_pred CcEEEEeCCCCceeeeeee
Q 048118 231 QSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 231 ~~i~iwd~~~~~~~~~~~~ 249 (303)
..|++++.++++++..+..
T Consensus 223 rkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cEEEEEEeccchhhhhhhc
Confidence 9999999999998877654
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.12 E-value=7.8e-07 Score=75.77 Aligned_cols=205 Identities=15% Similarity=0.198 Sum_probs=122.6
Q ss_pred CEEEEEEeeCCCEEEEEeC----CCcEEEEecCCc--eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 83 DVLSVAFSIDNRQIVSASR----DRTIKLWNTLGE--CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~----d~~i~vw~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
...-++++|++++|.+... ++.|..|++..+ ....+............++++|++. ..+++.-.+|.|.++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEEEc
Confidence 3445788999998888876 468888876543 1111111111122345688888862 23444446899999999
Q ss_pred CC-ceeEEE---Ec----------CCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeCCCCc--e----EEEecCCCeEEE
Q 048118 157 SN-CKLRAT---LA----------GHTGYVNTVAVSPDGSLCASGGK-DGVILLWDLAEGK--R----LYSLDAGAVIHA 215 (303)
Q Consensus 157 ~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~--~----~~~~~~~~~v~~ 215 (303)
.. +.+... +. .......++.++|+++++++... ...|.+|++.... . ...+..+...+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 333221 21 11234678999999998877643 4589999987654 2 113455677889
Q ss_pred EEEcCCCeEEEEE--cCCcEEEEeCC--CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-
Q 048118 216 LCFSPNRYWLCAA--TEQSIKIWDLE--SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY- 290 (303)
Q Consensus 216 ~~~s~~~~~l~~~--~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs- 290 (303)
++|+|++.++.+. .++.|.+|++. .+.+...-.+...+.. .. .......+.++|||++|.++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~-----------~~-~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG-----------FT-GENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT-----------SC-SSSSEEEEEE-TTSSEEEEEEC
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc-----------cc-ccCCceeEEEecCCCEEEEEec
Confidence 9999998766544 36789999887 4432221111111100 00 012456789999999877654
Q ss_pred cCCeEEEEec
Q 048118 291 TDGVIRVWGI 300 (303)
Q Consensus 291 ~Dg~v~~w~~ 300 (303)
.++.|.+|++
T Consensus 265 ~~~sI~vf~~ 274 (345)
T PF10282_consen 265 GSNSISVFDL 274 (345)
T ss_dssp TTTEEEEEEE
T ss_pred cCCEEEEEEE
Confidence 6778999988
No 255
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=4.5e-09 Score=83.40 Aligned_cols=263 Identities=18% Similarity=0.354 Sum_probs=157.8
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeee---eecCCCcceEEEEeCCCCcee---cccCCEEEEE
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARR---RLTGHSHFVQDVVLSSDGQFV---GHTKDVLSVA 88 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~---~h~~~i~~i~ 88 (303)
.+.|++|-|.-. +.|++||...|-+.+|..... ++.... .+++|.. +..|. .-...|+.|.
T Consensus 26 ad~ItaVefd~t-g~YlatGDkgGRVvlfer~~s---~~ceykf~teFQshe~---------EFDYLkSleieEKin~I~ 92 (460)
T COG5170 26 ADKITAVEFDET-GLYLATGDKGGRVVLFEREKS---YGCEYKFFTEFQSHEL---------EFDYLKSLEIEEKINAIE 92 (460)
T ss_pred cceeeEEEeccc-cceEeecCCCceEEEeecccc---cccchhhhhhhccccc---------chhhhhhccHHHHhhhee
Confidence 367999999854 579999999999999976432 222221 1222221 11111 1234588898
Q ss_pred EeeCCC--EEEEEeCCCcEEEEecCCceee--------------------e---------------e------ecCCCCc
Q 048118 89 FSIDNR--QIVSASRDRTIKLWNTLGECKY--------------------T---------------I------QEGDAHT 125 (303)
Q Consensus 89 ~~~~~~--~l~t~~~d~~i~vw~~~~~~~~--------------------~---------------~------~~~~~~~ 125 (303)
|..++. .++..+.|++|++|.+.....+ . + .....|.
T Consensus 93 w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 93 WFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred eecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 887653 5777889999999975211000 0 0 0112455
Q ss_pred cceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---eEEEEcCCC-----CCeeEEEECCC-CCEEEEEeCCCeEEEE
Q 048118 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---LRATLAGHT-----GYVNTVAVSPD-GSLCASGGKDGVILLW 196 (303)
Q Consensus 126 ~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~v~iw 196 (303)
.-|.++.++.+. ..++ ...|-.|.+|.+.--. ....++.|+ .-|++..|+|. ...+.-.+..|.|++.
T Consensus 173 yhiNSiS~NsD~--et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 173 YHINSISFNSDK--ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred eEeeeeeecCch--heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 557778887653 2344 4566778889875321 122233443 45788899994 4577777889999999
Q ss_pred eCCCCc------eEEE--ec---------CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc-eeeeeeeccccccccc
Q 048118 197 DLAEGK------RLYS--LD---------AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKS-IVEDLKVDLKTEAEKS 258 (303)
Q Consensus 197 d~~~~~------~~~~--~~---------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 258 (303)
|++... .+.. ++ .-..|..+.|++.|.++++-.--++.+||.+..+ .++.+.++.....+..
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHH
Confidence 998432 1111 11 1246888999999999998888999999987543 2333332211100000
Q ss_pred cCccceeecccccee-EEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 259 EATTATTTIKKKNIY-CTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 259 ~~~~~~~~~~~~~~~-~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
.. .....++ -..+.||.|.+.+++||..+..-+|.
T Consensus 330 d~------YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 330 DV------YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hh------hhccceeeeEEEEecCCcccccccccccceeeec
Confidence 00 0000111 13578899999999999988877775
No 256
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=5.3e-07 Score=86.84 Aligned_cols=262 Identities=15% Similarity=0.172 Sum_probs=149.8
Q ss_pred eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce-ecccCCEEEEEEeeCCCEEEE
Q 048118 20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF-VGHTKDVLSVAFSIDNRQIVS 98 (303)
Q Consensus 20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~l~t 98 (303)
.+++++.+++++++-+.++.|++|+..... .. .... .+.... .++.+ .++-.....+++++++..|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~--~ig~-~g~~G~-------~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IV--QIGS-TGEEGL-------RDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EE--EEcc-CCCcCC-------CCCchhccccCCCcEEEEeCCCCEEEE
Confidence 466666556688888888889999864211 00 0000 000000 01111 112234678999998876555
Q ss_pred Ee-CCCcEEEEecCCceeeeeecC-------CCC-------ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118 99 AS-RDRTIKLWNTLGECKYTIQEG-------DAH-------TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163 (303)
Q Consensus 99 ~~-~d~~i~vw~~~~~~~~~~~~~-------~~~-------~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 163 (303)
+. ..+.|+++|..+.....+... ... -.....++++|+. ...+++...++.|++||..++...
T Consensus 641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~~~~I~v~d~~~g~v~- 718 (1057)
T PLN02919 641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAGQHQIWEYNISDGVTR- 718 (1057)
T ss_pred EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECCCCeEEEEECCCCeEE-
Confidence 54 446788888754432222110 000 0123578898853 235667777889999998766532
Q ss_pred EEcC---------C------CCCeeEEEECCCCCE-EEEEeCCCeEEEEeCCCCceEEE-------------ec-C----
Q 048118 164 TLAG---------H------TGYVNTVAVSPDGSL-CASGGKDGVILLWDLAEGKRLYS-------------LD-A---- 209 (303)
Q Consensus 164 ~~~~---------~------~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~-------------~~-~---- 209 (303)
.+.+ + -.....++++|+++. +++-+.+++|++||+.++..... +. .
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 1211 0 123456999999884 45566789999999986542110 00 0
Q ss_pred ----CCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC
Q 048118 210 ----GAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS 284 (303)
Q Consensus 210 ----~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 284 (303)
......++++++|.+++ -..++.|++||.+++.+...... ...... +.. ...........++++++|+
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~--G~~G~~-dG~----~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT--GKAGFK-DGK----ALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc--CCcCCC-CCc----ccccccCCceEEEEeCCCC
Confidence 01235788899886544 44578999999987765432110 000000 000 0111122346788999999
Q ss_pred EEEEeecCCeEEEEecc
Q 048118 285 TLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 285 ~l~~gs~Dg~v~~w~~~ 301 (303)
.+++-+.+++|++||+.
T Consensus 872 lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 872 LFVADTNNSLIRYLDLN 888 (1057)
T ss_pred EEEEECCCCEEEEEECC
Confidence 99999999999999984
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=4.7e-08 Score=85.41 Aligned_cols=195 Identities=16% Similarity=0.129 Sum_probs=107.6
Q ss_pred cCCEEEEEEeeCCCE--E-EEEeCCCc--EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC----CCcE
Q 048118 81 TKDVLSVAFSIDNRQ--I-VSASRDRT--IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW----DRTV 151 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~--l-~t~~~d~~--i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----dg~i 151 (303)
...+..=.|+|+|+. + ++...++. |.+.++.+.....+..... .....+|+|++.. .+++... +-.+
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPDG~~-Laf~s~~~g~~di~~ 259 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPRKKL-LAFISDRYGNPDLFI 259 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCCCCE-EEEEECCCCCcceeE
Confidence 334555689999874 2 24444544 4445665443333332222 2345789999843 2333322 3334
Q ss_pred EEEECCCc---eeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEE--eCCC-CceEEEec-CCCeEEEEEEcCCCe
Q 048118 152 KVWNLSNC---KLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLW--DLAE-GKRLYSLD-AGAVIHALCFSPNRY 223 (303)
Q Consensus 152 ~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iw--d~~~-~~~~~~~~-~~~~v~~~~~s~~~~ 223 (303)
..|++..+ +.........+.....+|+|||+.|+..+ .+|..++| ++.. +.....+. ....+....|+|+|.
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence 45676542 33332323234456789999999887665 46655555 4432 22222232 223556788999998
Q ss_pred EEEEEc----CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEE-eec--CCeEE
Q 048118 224 WLCAAT----EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFS-GYT--DGVIR 296 (303)
Q Consensus 224 ~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~-gs~--Dg~v~ 296 (303)
.++... ...|++||+.+++... +.. .........|+|||++|+. +.. ...+.
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~--------------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQ-LTT--------------------SPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEE-ccC--------------------CCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 776543 2469999998775422 110 0011234679999997764 333 34566
Q ss_pred EEec
Q 048118 297 VWGI 300 (303)
Q Consensus 297 ~w~~ 300 (303)
++++
T Consensus 399 ~vdl 402 (428)
T PRK01029 399 LISL 402 (428)
T ss_pred EEEC
Confidence 6665
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=8.8e-08 Score=81.69 Aligned_cols=113 Identities=25% Similarity=0.382 Sum_probs=87.7
Q ss_pred CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCC
Q 048118 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAE 200 (303)
Q Consensus 124 ~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~ 200 (303)
..++|.++.|+|++.+..++.|-.=..+-|||++ +.++..+. .++=+.+-|+|.|++++.++- .|.+-+||+.+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 4678999999999877677778778889999985 44555443 466678999999999887764 58999999999
Q ss_pred CceEEEecCCCeEEEEEEcCCCeEEEEEc-------CCcEEEEeCCC
Q 048118 201 GKRLYSLDAGAVIHALCFSPNRYWLCAAT-------EQSIKIWDLES 240 (303)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~i~iwd~~~ 240 (303)
.+.+..+...... -+.|+|||.++.+++ |+.++||+...
T Consensus 346 ~K~i~~~~a~~tt-~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 346 RKLIAKFKAANTT-VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred hhhccccccCCce-EEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 8888777654443 368999997765543 78899999853
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.08 E-value=7.7e-07 Score=74.63 Aligned_cols=249 Identities=13% Similarity=0.123 Sum_probs=136.8
Q ss_pred eecccccccccceeeeecCCCCCcEEEEec---------CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTAS---------RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ 76 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 76 (303)
.+++++.....+- .+ ++|++..+.++.+ .+..|.+||.+..+... ++.+.++-+
T Consensus 38 ~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~---------------~i~~p~~p~ 100 (352)
T TIGR02658 38 RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA---------------DIELPEGPR 100 (352)
T ss_pred EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe---------------EEccCCCch
Confidence 4444444333232 23 7888777777777 78999999997654321 111111101
Q ss_pred eecccCCEEEEEEeeCCCEEEEEe-C-CCcEEEEecCCceeee-eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118 77 FVGHTKDVLSVAFSIDNRQIVSAS-R-DRTIKLWNTLGECKYT-IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~~~~l~t~~-~-d~~i~vw~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i 153 (303)
+. .......++++|+|++++... . +..|.+.|+....... +.... ...-...+.. .+..-+.||....
T Consensus 101 ~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----~~~vy~t~e~----~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 101 FL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----CYHIFPTAND----TFFMHCRDGSLAK 171 (352)
T ss_pred hh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC----CcEEEEecCC----ccEEEeecCceEE
Confidence 11 011234678999999888765 3 6889999986543221 11100 0011111111 1223345555555
Q ss_pred EECCC-ceeE-EE---EcCCCCCeeE-EEECC-CCCEEEEEeCCCeEEEEeCCCCc-----eEEEecC--------CCeE
Q 048118 154 WNLSN-CKLR-AT---LAGHTGYVNT-VAVSP-DGSLCASGGKDGVILLWDLAEGK-----RLYSLDA--------GAVI 213 (303)
Q Consensus 154 wd~~~-~~~~-~~---~~~~~~~i~~-~~~~~-~~~~l~~~~~d~~v~iwd~~~~~-----~~~~~~~--------~~~v 213 (303)
..+.+ ++.. .. +..-..++.. -.+.+ +|+++.+..+ |+|.+.|+.... .+..+.. ...+
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 43322 2211 11 1110111100 03455 7777766665 999999964432 2222211 1223
Q ss_pred EEEEEcCCCeEEEEEc-----------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC
Q 048118 214 HALCFSPNRYWLCAAT-----------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD 282 (303)
Q Consensus 214 ~~~~~s~~~~~l~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 282 (303)
..+++++++..+.+.. .+.|.++|.++++.+..+.+. ..+..++++||
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---------------------~~~~~iavS~D 309 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---------------------HEIDSINVSQD 309 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---------------------CceeeEEECCC
Confidence 4489999976555422 257999999999988766531 13467999999
Q ss_pred CC-EEEEee-cCCeEEEEeccc
Q 048118 283 GS-TLFSGY-TDGVIRVWGIGR 302 (303)
Q Consensus 283 ~~-~l~~gs-~Dg~v~~w~~~~ 302 (303)
++ +|.+.+ .++.|.+.|+..
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcC
Confidence 99 887666 689999999753
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=7.8e-08 Score=84.01 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=92.9
Q ss_pred CEEEEEEeeCCCEEEEEeC-CC----cEEEEecCCc---eeeeeecCCCCccceEEEEEcCCCCCCEEEE-EeCCCcEEE
Q 048118 83 DVLSVAFSIDNRQIVSASR-DR----TIKLWNTLGE---CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS-ASWDRTVKV 153 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~-d~----~i~vw~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~dg~i~i 153 (303)
.....+|+|||+.|+..+. ++ .+.+|+.... ....+.. .........+|+|++. .++. ...+|..++
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSPDG~--~Laf~s~~~g~~~l 307 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN--EAFGTQGNPSFSPDGT--RLVFVSNKDGRPRI 307 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec--CCCCCcCCeEECCCCC--EEEEEECCCCCceE
Confidence 3345789999988776543 22 3344654321 1111111 1112234578999974 3443 345665555
Q ss_pred E--ECCC-ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC---CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE
Q 048118 154 W--NLSN-CKLRATLAGHTGYVNTVAVSPDGSLCASGGKD---GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA 227 (303)
Q Consensus 154 w--d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 227 (303)
| ++.. +.....+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++..........+....|+|++..++.
T Consensus 308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f 387 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVY 387 (428)
T ss_pred EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEE
Confidence 5 4432 22233344444567788999999988776543 4789999988765432222335667899999876654
Q ss_pred E-c---CCcEEEEeCCCCce
Q 048118 228 A-T---EQSIKIWDLESKSI 243 (303)
Q Consensus 228 ~-~---~~~i~iwd~~~~~~ 243 (303)
. . ...|+++|+.+++.
T Consensus 388 ~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 388 SAGNSNESELYLISLITKKT 407 (428)
T ss_pred EECCCCCceEEEEECCCCCE
Confidence 3 2 35689999877654
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=2.5e-09 Score=101.90 Aligned_cols=186 Identities=15% Similarity=0.253 Sum_probs=135.3
Q ss_pred ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC 159 (303)
Q Consensus 80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~ 159 (303)
+-..|.++.-+|...+.+||+.||.+++|............. ..+..+..+.|+.++ +.+..+..||.+.+|... .
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~s~vtr~~f~~qG--nk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGNSRVTRSRFNHQG--NKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCcchhhhhhhcccC--CceeeeccCCceeecccC-C
Confidence 445678888889888999999999999998643322222222 223667778888776 567888899999999986 5
Q ss_pred eeEEEEcCCCCCeeEEEECCCCCEEEEEe---CCCeEEEEeCCCCc---eEEEecCCCeEEEEEEcCCCeEE-EEEcCCc
Q 048118 160 KLRATLAGHTGYVNTVAVSPDGSLCASGG---KDGVILLWDLAEGK---RLYSLDAGAVIHALCFSPNRYWL-CAATEQS 232 (303)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~ 232 (303)
++....+.|+...+.++|-. ..+++++ .++.+.+||..-.. .+. .-+...++++++-|..+++ .++.+|.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc
Confidence 55667788888888888864 4566654 47899999964322 222 2234567889999987655 4556999
Q ss_pred EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
|.+||++.+++...+.. +. ...++++|+..|.+++|+++.
T Consensus 2360 v~l~D~rqrql~h~~~~-----------------------------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA-----------------------------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEEeehHHHHHHHHhhh-----------------------------hh-hhheeeccCcccceEEEEccc
Confidence 99999998876543321 33 567999999999999999865
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.6e-07 Score=82.56 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=112.6
Q ss_pred ccccccceeeeecCCCCCcEEEEecC-C--CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASR-D--KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV 87 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~-d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i 87 (303)
+..+.+.+....|+|++. .|+..+. + ..|.+|++..++.. .+ ....+.+...
T Consensus 194 l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~------~l------------------~~~~g~~~~~ 248 (430)
T PRK00178 194 LLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRRE------QI------------------TNFEGLNGAP 248 (430)
T ss_pred EecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEE------Ec------------------cCCCCCcCCe
Confidence 334556678889999875 5555443 3 35777777543211 00 0111223457
Q ss_pred EEeeCCCEEE-EEeCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cEEEEECCCceeE
Q 048118 88 AFSIDNRQIV-SASRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TVKVWNLSNCKLR 162 (303)
Q Consensus 88 ~~~~~~~~l~-t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i~iwd~~~~~~~ 162 (303)
.|+|+|+.++ +...++ .|.++|..+.....+. .+........|+|++.. .+++...++ .|.++|+.+++..
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT---NHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeEEcc---cCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence 8999998776 444555 4667787554332222 12223445679998732 333443444 4666787766643
Q ss_pred EEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--C--CcEEE
Q 048118 163 ATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--E--QSIKI 235 (303)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~--~~i~i 235 (303)
.... .........|+|+|+.++..+. ++ .|.++|+.+++.. .+..........|+|+|.+++.+. + ..|++
T Consensus 325 ~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~ 402 (430)
T PRK00178 325 RVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATRQQGRGVLML 402 (430)
T ss_pred Eeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 3221 1223345789999999877664 33 5788998877542 222222223457999987776543 2 34777
Q ss_pred EeCCC
Q 048118 236 WDLES 240 (303)
Q Consensus 236 wd~~~ 240 (303)
.++..
T Consensus 403 ~~~~g 407 (430)
T PRK00178 403 VSING 407 (430)
T ss_pred EECCC
Confidence 77754
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=4.2e-06 Score=68.17 Aligned_cols=249 Identities=13% Similarity=0.187 Sum_probs=144.3
Q ss_pred cccceeeeecCCCCCcEEEEecC---CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 14 HTDMVTAIATPIDNSDMIVTASR---DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 14 h~~~v~~v~~~~~~~~~~~t~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
+...++-+.++|+.. .|.++.. +|.|..|.+......... +... .....+.+.++++
T Consensus 38 ~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~-----------ln~~--------~~~g~~p~yvsvd 97 (346)
T COG2706 38 ELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTF-----------LNRQ--------TLPGSPPCYVSVD 97 (346)
T ss_pred ccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEE-----------eecc--------ccCCCCCeEEEEC
Confidence 445566677887653 4555543 466777776543111100 0000 0111233678999
Q ss_pred eCCCEEEEEeC-CCcEEEEecCCcee-eeeecCCCCccc----------eEEEEEcCCCCCCEEEEE-eCCCcEEEEECC
Q 048118 91 IDNRQIVSASR-DRTIKLWNTLGECK-YTIQEGDAHTEW----------VSCVRFSPNTLQPTIVSA-SWDRTVKVWNLS 157 (303)
Q Consensus 91 ~~~~~l~t~~~-d~~i~vw~~~~~~~-~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~-~~dg~i~iwd~~ 157 (303)
++|++++++.. .+.|.++-+..+.. ........|... +.+..+.|++ .++++. -....|.+|++.
T Consensus 98 ~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 98 EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEeecCCceEEEEEcc
Confidence 99998877754 57888887643211 111011112111 6778888976 344443 234568899998
Q ss_pred CceeEEEEc---CCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCC-c---eEEEe-------cCCCeEEEEEEcCCC
Q 048118 158 NCKLRATLA---GHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEG-K---RLYSL-------DAGAVIHALCFSPNR 222 (303)
Q Consensus 158 ~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~-~---~~~~~-------~~~~~v~~~~~s~~~ 222 (303)
.+++...-. .....-.-+.|+|++++..+.. .+++|.+|..... . .++++ ......-.+..+++|
T Consensus 176 dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG 255 (346)
T COG2706 176 DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG 255 (346)
T ss_pred cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence 776532211 1123457799999999886555 5999999998763 2 22222 234567788899999
Q ss_pred eEEEEEc--CCcEEEEeCCCC-ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC-CeEEEE
Q 048118 223 YWLCAAT--EQSIKIWDLESK-SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-GVIRVW 298 (303)
Q Consensus 223 ~~l~~~~--~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-g~v~~w 298 (303)
.+|.++. ..+|.+|.+... ..+...... ..+.....++.++|.+++|+++++| ..+.+|
T Consensus 256 rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~-----------------~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 256 RFLYASNRGHDSIAVFSVDPDGGKLELVGIT-----------------PTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CEEEEecCCCCeEEEEEEcCCCCEEEEEEEe-----------------ccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9998886 457888876532 212111110 0011223567789999988877764 467888
Q ss_pred ecc
Q 048118 299 GIG 301 (303)
Q Consensus 299 ~~~ 301 (303)
.++
T Consensus 319 ~~d 321 (346)
T COG2706 319 ERD 321 (346)
T ss_pred EEc
Confidence 664
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.96 E-value=2.9e-06 Score=71.52 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=104.8
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCCC-cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRDR-TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS 157 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~ 157 (303)
+|.+.|.-..+.-+++-++.|..|+ .+-++|..+.....+. ..-..|.+++.+|++ ..++.+.....+.++|+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---~~lg~I~av~vs~dG--K~~vvaNdr~el~vidid 431 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---KDLGNIEAVKVSPDG--KKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---CCccceEEEEEcCCC--cEEEEEcCceEEEEEEec
Confidence 5677777777777777888899998 8999998765533332 334568999999987 357777888899999999
Q ss_pred CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCC----eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE
Q 048118 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG----VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL 225 (303)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 225 (303)
++....--+...+-|+.+.|||+++++|-+-.+| .|+++|+..++........+.=.+-+|.|++..|
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence 9887655555667899999999999999887765 7899999877654332222333345677776544
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.95 E-value=1.6e-08 Score=82.79 Aligned_cols=164 Identities=14% Similarity=0.215 Sum_probs=103.4
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEE-EEeCCCcEEEEECCCcee
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIV-SASWDRTVKVWNLSNCKL 161 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~ 161 (303)
+..+..++.++++|.+..++...+++....+. ........-...-.++.|-.+.....++ ..+....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~- 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR- 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence 44556778888888888888776776544332 1110000000111222222222111111 12233334444443332
Q ss_pred EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118 162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWLCAATEQSIKIWDLE 239 (303)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 239 (303)
...+.+|-..++.++++||+++++++..|..|++-....-..+..+- +..-|..++.-++..++.++.|+++++||++
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence 34456888999999999999999999999999998776554444442 3456888888888888888899999999999
Q ss_pred CCceeeeee
Q 048118 240 SKSIVEDLK 248 (303)
Q Consensus 240 ~~~~~~~~~ 248 (303)
+++.+..+.
T Consensus 224 sgk~L~t~d 232 (390)
T KOG3914|consen 224 SGKLLDTCD 232 (390)
T ss_pred cCCcccccc
Confidence 999886654
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=3.1e-07 Score=80.88 Aligned_cols=168 Identities=18% Similarity=0.150 Sum_probs=97.7
Q ss_pred cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCC--cEEEEECCCceeEEEEcCCCCCeeEEEECCC
Q 048118 104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDR--TVKVWNLSNCKLRATLAGHTGYVNTVAVSPD 180 (303)
Q Consensus 104 ~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 180 (303)
.|.++|..+.....+. .....+.+..|+|++. .++..+ .++ .|.++|+.+++... +....+......|+|+
T Consensus 199 ~l~i~d~dG~~~~~l~---~~~~~~~~p~wSPDG~--~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNEQMLL---RSPEPLMSPAWSPDGR--KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCceEee---cCCCcccCceECCCCC--EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC
Confidence 4556666543222222 1234577889999973 344433 233 58888988766432 2222334457899999
Q ss_pred CCEEEE-EeCCCe--EEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC----CcEEEEeCCCCceeeeeeecccc
Q 048118 181 GSLCAS-GGKDGV--ILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE----QSIKIWDLESKSIVEDLKVDLKT 253 (303)
Q Consensus 181 ~~~l~~-~~~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~ 253 (303)
|+.|+. .+.++. |.++|+.+++..............+|+|++..++..++ ..|+++|+++++... +..
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~---- 347 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF---- 347 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec----
Confidence 998765 455664 77788887754322222334566889999876655432 357888887665322 110
Q ss_pred ccccccCccceeeccccceeEEEEEEcCCCCEEEEeec-CCeEEEE
Q 048118 254 EAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT-DGVIRVW 298 (303)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~-Dg~v~~w 298 (303)
. ..+....+|+|||++|+..+. ++..++|
T Consensus 348 --------------~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 348 --------------E--GEQNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred --------------C--CCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence 0 001123578999998776544 4544444
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=9.2e-07 Score=78.00 Aligned_cols=222 Identities=15% Similarity=0.213 Sum_probs=132.4
Q ss_pred cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118 16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ 95 (303)
Q Consensus 16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 95 (303)
....++.|+.+ .+++|-||.||.+++-++...... .....+. ..+. ++-+..+.||.+.|.-+.|+.+.+.
T Consensus 15 vkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d--~~~~gla----a~sn--LsmNQtLeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 15 VKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTD--LNKSGLA----AASN--LSMNQTLEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred ceEEEEEEccc-CCeEEeccccceeEEEEccccCCc--ccccccc----cccc--cchhhhhccCcceEEEEEecccccc
Confidence 34678999976 579999999999999998654321 1111111 1121 2234467899999999999999999
Q ss_pred EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE--------EEE-------------
Q 048118 96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV--------KVW------------- 154 (303)
Q Consensus 96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i--------~iw------------- 154 (303)
|-|...+|-|.+|-+-......--..+.....|.+++|+.++. .++..-.||.| |||
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchhecccee
Confidence 9999999999999764332211111122345577888887763 23333334333 223
Q ss_pred --------------------ECCCc-------eeEEE----EcCCCCCeeEEEE--------CCCCCEEEEEeCCCeEEE
Q 048118 155 --------------------NLSNC-------KLRAT----LAGHTGYVNTVAV--------SPDGSLCASGGKDGVILL 195 (303)
Q Consensus 155 --------------------d~~~~-------~~~~~----~~~~~~~i~~~~~--------~~~~~~l~~~~~d~~v~i 195 (303)
|...+ .+... +......|-.+.| -|+...|+++-..|++++
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 22110 00000 0000111333444 257778999989999888
Q ss_pred EeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC----------CcEEEEeCCCCceeeeeee
Q 048118 196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE----------QSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 196 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------~~i~iwd~~~~~~~~~~~~ 249 (303)
..-........++.+..+....|+++|.+|+++.. +.|.+|.. -|+.+..+++
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkv 306 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKV 306 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEec
Confidence 75444433344555677888999999998887632 24555543 3555555443
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=5.1e-06 Score=67.71 Aligned_cols=209 Identities=18% Similarity=0.280 Sum_probs=126.5
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCc-eeeeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGE-CKYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~-~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i 153 (303)
.+.+.+.-++|+|+++.|.++-.+ +.|-.|.+... ....+. .......+..-+++++++ +..+.+--.-|.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDG-RFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCC-CEEEEEEccCceEEE
Confidence 455677889999999888887654 66777765432 111111 111111223668888876 223333445688999
Q ss_pred EECCC-ceeE--EEEcCCCCC----------eeEEEECCCCCEEEEEeC-CCeEEEEeCCCCceE----EEecCCCeEEE
Q 048118 154 WNLSN-CKLR--ATLAGHTGY----------VNTVAVSPDGSLCASGGK-DGVILLWDLAEGKRL----YSLDAGAVIHA 215 (303)
Q Consensus 154 wd~~~-~~~~--~~~~~~~~~----------i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~----~~~~~~~~v~~ 215 (303)
+.++. +.+. .....|.+. +....+.|++++|++... --+|.+|++..+... ..+..+.--+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 99865 3321 122234444 788899999999988763 347899999876532 22345667788
Q ss_pred EEEcCCCeEEEEEc--CCcEEEEeCCCC-ceeeeeee-ccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118 216 LCFSPNRYWLCAAT--EQSIKIWDLESK-SIVEDLKV-DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT 291 (303)
Q Consensus 216 ~~~s~~~~~l~~~~--~~~i~iwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~ 291 (303)
+.|+|+++++.+.. +++|.+|..+.. ..+..+.. ...+ ..+ ....+..++..+|||++|.++.-
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP-----------~dF-~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP-----------EDF-TGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc-----------ccc-CCCCceeEEEECCCCCEEEEecC
Confidence 99999998765443 789999998763 22222221 1100 011 12334567888999998887643
Q ss_pred -CCeEEEEec
Q 048118 292 -DGVIRVWGI 300 (303)
Q Consensus 292 -Dg~v~~w~~ 300 (303)
...|-+|.+
T Consensus 264 g~dsI~~f~V 273 (346)
T COG2706 264 GHDSIAVFSV 273 (346)
T ss_pred CCCeEEEEEE
Confidence 224555544
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.91 E-value=5.7e-06 Score=78.53 Aligned_cols=200 Identities=13% Similarity=0.201 Sum_probs=127.7
Q ss_pred ccCCEEEEEEeeCCCEEEEEeCCCcEEEE----ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
..+.|.++.+.++...++.+..+|.|.+. +........+- .-...|.+.+|+|+. ..++..+.++.+.+.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG---~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG---SVDSGILAASWSPDE--ELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE---EEcCcEEEEEECCCc--CEEEEEeCCCEEEEEe
Confidence 34678999999999989889999999988 43322221111 224569999999986 3566666677766553
Q ss_pred CC---------------Ccee--------EEEEcC------------------------CCCCeeEEEECCCCCEEEEEe
Q 048118 156 LS---------------NCKL--------RATLAG------------------------HTGYVNTVAVSPDGSLCASGG 188 (303)
Q Consensus 156 ~~---------------~~~~--------~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~ 188 (303)
-. ..+. ...|.| ....-..++|-.||++||+.+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 10 0000 001111 112345688999999999877
Q ss_pred C------CCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEcC----CcEEEEeCCCCceeeeeeecccccccc
Q 048118 189 K------DGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAATE----QSIKIWDLESKSIVEDLKVDLKTEAEK 257 (303)
Q Consensus 189 ~------d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (303)
- -+++|||+-+ |+.-.+- .....-.+++|.|.|.++|+... ..|.+|.- +|-.-.++....
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~------ 300 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF------ 300 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC------
Confidence 4 2589999865 4432222 22334567899999999988753 45777774 332222222111
Q ss_pred ccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118 258 SEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~ 303 (303)
......+..+.|++|+..||+--.|. |.+|-.++|
T Consensus 301 ----------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 301 ----------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred ----------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 11233457899999999999988666 999999988
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.91 E-value=3.3e-06 Score=80.09 Aligned_cols=284 Identities=13% Similarity=0.221 Sum_probs=154.4
Q ss_pred eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccC---c-----cccc----------eeeeeecCCCcce
Q 048118 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKE---E-----KTYG----------VARRRLTGHSHFV 66 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~---~-----~~~~----------~~~~~~~~~~~~i 66 (303)
++++|.+.. -|.+.+|+|+. ++++....++++-+-...-. + ...+ ....-+.+..+..
T Consensus 113 ~E~VG~vd~---GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~ 188 (928)
T PF04762_consen 113 IEIVGSVDS---GILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKA 188 (928)
T ss_pred eEEEEEEcC---cEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhh
Confidence 455554443 58899999986 68888888888887753210 0 0000 0000000000000
Q ss_pred -----EEEEeC--CCCceecccCCEEEEEEeeCCCEEEEEeC---C---CcEEEEecCCceeeeeecCCCCccceEEEEE
Q 048118 67 -----QDVVLS--SDGQFVGHTKDVLSVAFSIDNRQIVSASR---D---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRF 133 (303)
Q Consensus 67 -----~~~~~~--~~~~~~~h~~~i~~i~~~~~~~~l~t~~~---d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~ 133 (303)
..-... ..+.+. +.+.-..|+|-.||++||+.+. . ..+|||+-.+...... ++-..--.+++|
T Consensus 189 aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stS---E~v~gLe~~l~W 264 (928)
T PF04762_consen 189 AARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTS---EPVDGLEGALSW 264 (928)
T ss_pred hhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEecc---ccCCCccCCccC
Confidence 000000 011222 3445567999999999998875 2 5788998764322111 111222246889
Q ss_pred cCCCCCCEEEEEeC---CCcEEEEECCCceeEEEEc----CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---
Q 048118 134 SPNTLQPTIVSASW---DRTVKVWNLSNCKLRATLA----GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR--- 203 (303)
Q Consensus 134 ~~~~~~~~~~~~~~---dg~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--- 203 (303)
-|.+ +.+++.-. .-.|.+|. ++|....+|. .....|..+.|++++..||..-.|. |++|-..+..-
T Consensus 265 rPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 265 RPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred CCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence 9986 45555433 23466665 4444444443 2346789999999999999877655 99998766542
Q ss_pred -EEEecCCCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCC----Cc--------eeeeeeec--cccccccccCccceee
Q 048118 204 -LYSLDAGAVIHALCFSPNR--YWLCAATEQSIKIWDLES----KS--------IVEDLKVD--LKTEAEKSEATTATTT 266 (303)
Q Consensus 204 -~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~----~~--------~~~~~~~~--~~~~~~~~~~~~~~~~ 266 (303)
...+.....+..+.|+|.. .+.+.+.+|.+..+++.. +. .+..+.-. .-++......++++..
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~ 420 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS 420 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence 1223333445558999974 344455557776665421 10 00000000 0000011111222211
Q ss_pred cc-ccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 267 IK-KKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 267 ~~-~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
.. .....+.+++|++++..+++-..||.+.+|..
T Consensus 421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 421 YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 11 11234688999999888999999999999974
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=1.2e-08 Score=89.70 Aligned_cols=212 Identities=17% Similarity=0.309 Sum_probs=135.5
Q ss_pred eecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 77 FVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
+.+|...|+.+-|+++. ..+++++.|-.+..||....... +.....-...-..++|+-.. +.+++.+....|++||
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-~ys~~~w~s~asqVkwnyk~--p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP-FYSTSSWRSAASQVKWNYKD--PNVLASSHGNDIFVWD 186 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCcc-eeeeecccccCceeeecccC--cchhhhccCCceEEEe
Confidence 45889999999999864 58999999999999998654322 11111111223457787543 3455556677899999
Q ss_pred CCCc-eeEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCc--eEEEecCCCeEEEEEEcCCC--eEEEE-E
Q 048118 156 LSNC-KLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNR--YWLCA-A 228 (303)
Q Consensus 156 ~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~--~~l~~-~ 228 (303)
++.+ .++..+++|...|..+.|+.-. ..+.+++.||+|+.||-.... .-+++....++..-++-|-| ..+.- -
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 9765 5778888898889999887532 357788899999999986543 33444556677766777754 22221 2
Q ss_pred cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC--------CC--CEEEEeecCCeEEEE
Q 048118 229 TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV--------DG--STLFSGYTDGVIRVW 298 (303)
Q Consensus 229 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--------~~--~~l~~gs~Dg~v~~w 298 (303)
.++.+.+++.++.....+ ..+..++.+.+.+|.-.+....|-- |. =.|+|=|.|..+|+|
T Consensus 267 G~n~v~~~~c~n~d~e~n----------~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWN----------VFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CCeeeeeccccchhhhhc----------cccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 233555555544332211 1122334455555554443333332 21 269999999999999
Q ss_pred ecc
Q 048118 299 GIG 301 (303)
Q Consensus 299 ~~~ 301 (303)
-++
T Consensus 337 pI~ 339 (1081)
T KOG0309|consen 337 PID 339 (1081)
T ss_pred ecc
Confidence 875
No 272
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.90 E-value=7.9e-09 Score=57.72 Aligned_cols=38 Identities=47% Similarity=0.832 Sum_probs=36.0
Q ss_pred eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEe
Q 048118 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197 (303)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd 197 (303)
++..++.+|.+.|++++|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=5.4e-08 Score=77.41 Aligned_cols=215 Identities=17% Similarity=0.319 Sum_probs=133.4
Q ss_pred cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc--eeee----eecCCC---------CccceEEEEEcCCCCCCEEEEE
Q 048118 81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE--CKYT----IQEGDA---------HTEWVSCVRFSPNTLQPTIVSA 145 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~--~~~~----~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~ 145 (303)
...|+++.|...|.+++||...|.|.+|.-... +.+. ++..+. -.+.|..+.|..++....++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 456889999999999999999999999974321 1111 111111 1234677877765555677778
Q ss_pred eCCCcEEEEECCCce--------------------e----------------------EEEE-cCCCCCeeEEEECCCCC
Q 048118 146 SWDRTVKVWNLSNCK--------------------L----------------------RATL-AGHTGYVNTVAVSPDGS 182 (303)
Q Consensus 146 ~~dg~i~iwd~~~~~--------------------~----------------------~~~~-~~~~~~i~~~~~~~~~~ 182 (303)
+.|.+|++|.+.... + .+.+ ..|.-.+.++.++.+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 999999999864220 0 0001 24555678899998888
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEe---cC------CCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118 183 LCASGGKDGVILLWDLAEGKRLYSL---DA------GAVIHALCFSPNR--YWLCAATEQSIKIWDLESKSIVEDLKVDL 251 (303)
Q Consensus 183 ~l~~~~~d~~v~iwd~~~~~~~~~~---~~------~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~ 251 (303)
.++++ .|-+|.+|++.-...-.++ .. ...|++..|+|.. .++.+++.|.|++-|++...+-..-+- +
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k-l 263 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK-L 263 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh-h
Confidence 77765 6789999998643322222 21 1357888999974 455677889999999986544321100 0
Q ss_pred ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.. ...+ ......+..-...+.++.|++.|+++++-+. .+|++||+.
T Consensus 264 fe--~~~D-~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvn 309 (460)
T COG5170 264 FE--LTID-GVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVN 309 (460)
T ss_pred hh--hccC-cccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecc
Confidence 00 0000 0000001111123567889999999987664 589999985
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.89 E-value=8.1e-08 Score=77.33 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=129.9
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd 155 (303)
.+.||.+.|+....-|...-+++.+.|.++|||-..+...+..........+++++.+.++. ..++.|-.+|++.-+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEEEE
Confidence 46788888888888888888999999999999964332221111111123456777777764 4678888889988885
Q ss_pred CC----CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCC
Q 048118 156 LS----NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQ 231 (303)
Q Consensus 156 ~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 231 (303)
+. .....+.+..|...+..+.|+-..+.+++.+.|..+.---.+.+..+..........++.+.-. .....-..|
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~~g 175 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-YAFVGDHSG 175 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-EEEeccccc
Confidence 53 3345566778999999999998888999999988776555555554432211111111111000 111111223
Q ss_pred cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 232 SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.|.+-.+.. .......++.++...+.++.|.|....|++|..|..+.+||++
T Consensus 176 qvt~lr~~~------------------~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 176 QITMLKLEQ------------------NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred ceEEEEEee------------------cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 333322211 1112234456666677889999999999999999999999985
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.87 E-value=1.8e-06 Score=67.53 Aligned_cols=194 Identities=11% Similarity=0.022 Sum_probs=120.8
Q ss_pred CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE-EeeCCCEEEEEeCCCcEE
Q 048118 28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA-FSIDNRQIVSASRDRTIK 106 (303)
Q Consensus 28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~-~~~~~~~l~t~~~d~~i~ 106 (303)
-.+|+.||.-|.+.+|..+..+..+..+- .|...|.-+. .......+..++.|++++
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd----------------------~snn~v~~~~r~cd~~~~~~i~sndht~k 141 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCD----------------------VSNNDVTLVKRYCDLKFPLNIASNDHTGK 141 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeec----------------------ccccchhhhhhhcccccceeeccCCccee
Confidence 46899999999999998864432211110 0111111000 011122455678899999
Q ss_pred EEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--eEE-EEcCCCCCeeEEEECCCCCE
Q 048118 107 LWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--LRA-TLAGHTGYVNTVAVSPDGSL 183 (303)
Q Consensus 107 vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~~i~~~~~~~~~~~ 183 (303)
+.+............ . +-...++..++++ ..+++.+....|..|.+.... ... ....-++.-.+..|+.....
T Consensus 142 ~~~~~~~s~~~~~h~-~-~~~~ns~~~snd~--~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~ 217 (344)
T KOG4532|consen 142 TMVVSGDSNKFAVHN-Q-NLTQNSLHYSNDP--SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ 217 (344)
T ss_pred EEEEecCcccceeec-c-ccceeeeEEcCCC--ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce
Confidence 988755433222111 1 1126778888876 467777788888888875432 222 23333455577889999999
Q ss_pred EEEEeCCCeEEEEeCCCCceE-EEe-----cCCCeEEEEEEcCCC---eEEEEEcCCcEEEEeCCCCceeeee
Q 048118 184 CASGGKDGVILLWDLAEGKRL-YSL-----DAGAVIHALCFSPNR---YWLCAATEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 184 l~~~~~d~~v~iwd~~~~~~~-~~~-----~~~~~v~~~~~s~~~---~~l~~~~~~~i~iwd~~~~~~~~~~ 247 (303)
+|+++.||++.|||++..... ... .+...++.+.|++.| .++.+-.-+.+.+-|+++++-...+
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 999999999999999864322 111 245689999999865 3344445678999999987655443
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.87 E-value=7.3e-07 Score=69.67 Aligned_cols=154 Identities=15% Similarity=0.043 Sum_probs=100.3
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR 162 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~ 162 (303)
+++++++++++++++.+....|-.|.+..+..+... ....-++.-.+..|+... ..++++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~--~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND--LQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc--ceEEEEecCCcEEEEEecccccc
Confidence 778999999999999999999999987544322221 112223334577788765 46899999999999999865322
Q ss_pred -----EEEcCCCCCeeEEEECCCCC--EEEEEeCCCeEEEEeCCCCceEEEecCC---------CeEEEEEEcCCCeEEE
Q 048118 163 -----ATLAGHTGYVNTVAVSPDGS--LCASGGKDGVILLWDLAEGKRLYSLDAG---------AVIHALCFSPNRYWLC 226 (303)
Q Consensus 163 -----~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 226 (303)
.+-..|++.+..+.|+|-|. +|...-.-+.+.+.|++++.....+... ..+....|+.++.-..
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 22345889999999998663 4444445678999999987654443211 1244445555544333
Q ss_pred EEcCCcEEEEeCC
Q 048118 227 AATEQSIKIWDLE 239 (303)
Q Consensus 227 ~~~~~~i~iwd~~ 239 (303)
+.+.-.+.=|++.
T Consensus 319 v~~e~~~ae~ni~ 331 (344)
T KOG4532|consen 319 VKNELQGAEYNIL 331 (344)
T ss_pred cccchhhheeecc
Confidence 3333444555544
No 277
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.86 E-value=6.2e-06 Score=70.01 Aligned_cols=192 Identities=12% Similarity=0.189 Sum_probs=113.0
Q ss_pred CEEEEEEeeCCC--EEE-----EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe---------
Q 048118 83 DVLSVAFSIDNR--QIV-----SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS--------- 146 (303)
Q Consensus 83 ~i~~i~~~~~~~--~l~-----t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------- 146 (303)
.|....|+|.+. .|+ ..+.++++++|.+........... -...-..+.|++.+....+.+-.
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEEEEecCCceEEEEEEEeeeccccee
Confidence 466667777632 233 234667888887643222111100 00011246677765321111111
Q ss_pred CCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe--CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeE
Q 048118 147 WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW 224 (303)
Q Consensus 147 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~ 224 (303)
.+..++++++....+.... .-.++|..+.|.|.++.|++.+ .+..+.++|++.. ..+.+ ....-+.+.|+|.+.+
T Consensus 253 gesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 253 GESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-PEQKRNTIFFSPHERY 329 (561)
T ss_pred ccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEec-CCcccccccccCcccE
Confidence 1245778887644433332 4568999999999988776554 6889999999865 33333 3445556789999866
Q ss_pred EEEE-c---CCcEEEEeCCCCceee-eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee------cCC
Q 048118 225 LCAA-T---EQSIKIWDLESKSIVE-DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY------TDG 293 (303)
Q Consensus 225 l~~~-~---~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs------~Dg 293 (303)
+..+ - .|.|.+||...+..+- .+. ...+.-+.|+||+.++.+.. .|+
T Consensus 330 il~agF~nl~gni~i~~~~~rf~~~~~~~----------------------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn 387 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFN----------------------GLNTSYCDWSPDGQFYDTDTTSEKLRVDN 387 (561)
T ss_pred EEEecCCccccceEEeccCCceEEEEEee----------------------cCCceEeeccCCceEEEecCCCcccccCc
Confidence 5543 2 5789999987654332 110 01123367999999877663 388
Q ss_pred eEEEEecc
Q 048118 294 VIRVWGIG 301 (303)
Q Consensus 294 ~v~~w~~~ 301 (303)
.+.+||+.
T Consensus 388 ~i~l~~v~ 395 (561)
T COG5354 388 SIKLWDVY 395 (561)
T ss_pred ceEEEEec
Confidence 89999985
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.85 E-value=4.1e-06 Score=80.84 Aligned_cols=160 Identities=14% Similarity=0.116 Sum_probs=104.7
Q ss_pred EEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeec------CCC------CccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118 84 VLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQE------GDA------HTEWVSCVRFSPNTLQPTIVSASWDRT 150 (303)
Q Consensus 84 i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~------~~~------~~~~i~~~~~~~~~~~~~~~~~~~dg~ 150 (303)
...++++| ++.++++...++.|++|+........+.. ... .-.....++++|++. ..+++-..++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK-ELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC-EEEEEECCCCe
Confidence 45789999 56667777788999999975432211110 000 012345688999763 24566677799
Q ss_pred EEEEECCCceeEEEEc-------------CC--------CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC
Q 048118 151 VKVWNLSNCKLRATLA-------------GH--------TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 209 (303)
Q Consensus 151 i~iwd~~~~~~~~~~~-------------~~--------~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 209 (303)
|++||+.++....... .. -..-..++++++|+.+++-+.+++|++||..++........
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 9999987654321110 00 01235789999999888888999999999987654322211
Q ss_pred --------------CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCcee
Q 048118 210 --------------GAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIV 244 (303)
Q Consensus 210 --------------~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~ 244 (303)
-.....++++++|.++++. .++.|++||+++++..
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence 1246678999998765554 5788999999887653
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.84 E-value=5.3e-08 Score=75.54 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCC
Q 048118 127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE 200 (303)
Q Consensus 127 ~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~ 200 (303)
.+.+++-+|.. +..+++|+.||.+-+||.++.. +...+..|+.+++.+.|+| ++..|.++++||.+-.||..+
T Consensus 181 ~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 38899999976 4578899999999999998764 3455678999999999999 667899999999999999764
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.80 E-value=3.2e-06 Score=71.25 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=105.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-cEEEEECCCceeEEEEcCCCC
Q 048118 92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-TVKVWNLSNCKLRATLAGHTG 170 (303)
Q Consensus 92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 170 (303)
+|.+++..+. |..-+.+...... ++. ++...|.-..+.-++. .++.|..|| .+-+||..+++... +...-+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~--iqv--~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg 402 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYS--IQV--GKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGEVKR-IEKDLG 402 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCee--EEc--CCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCceEEE-eeCCcc
Confidence 5677777776 4555555433222 222 2344465555555442 578888998 89999998876543 455567
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEc-----CCcEEEEeCCCCcee
Q 048118 171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAAT-----EQSIKIWDLESKSIV 244 (303)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-----~~~i~iwd~~~~~~~ 244 (303)
.|.+++.+|+|++++++.....+-+.|+.+++.-..- .....|..+.|+|++.|+|.+. .+.|++||+.+++..
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 8999999999999999988889999999988753221 2246799999999999998774 467999999998876
Q ss_pred ee
Q 048118 245 ED 246 (303)
Q Consensus 245 ~~ 246 (303)
..
T Consensus 483 ~v 484 (668)
T COG4946 483 DV 484 (668)
T ss_pred Ee
Confidence 53
No 281
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=3.8e-06 Score=72.04 Aligned_cols=111 Identities=14% Similarity=0.274 Sum_probs=71.3
Q ss_pred CCCeeEEEECCCCCEEEEEe---CCCeEEEEeCCC-Cc---eEEEecCCCeEEEEEEcCCCeEEEEE----cCCcEEEEe
Q 048118 169 TGYVNTVAVSPDGSLCASGG---KDGVILLWDLAE-GK---RLYSLDAGAVIHALCFSPNRYWLCAA----TEQSIKIWD 237 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~-~~---~~~~~~~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd 237 (303)
...|...+|-|.|..+++-+ ...++++|.+++ .. .+..++. ...+.+.|+|.|.+++++ ..|.+.+||
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 35677889999998765433 245788888763 21 2233332 567889999999887654 478899999
Q ss_pred CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC------eEEEEec
Q 048118 238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG------VIRVWGI 300 (303)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg------~v~~w~~ 300 (303)
......... . . ......+.+.|.|.|+|++|+++-+ --++|+.
T Consensus 524 ~~~a~~k~~-~-------------~------~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 524 TDYADLKDT-A-------------S------PEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred cchhhhhhc-c-------------C------ccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 864221110 0 0 0112235688999999999998744 4455554
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.78 E-value=1.1e-07 Score=74.94 Aligned_cols=170 Identities=18% Similarity=0.183 Sum_probs=108.8
Q ss_pred eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118 5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV 84 (303)
Q Consensus 5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i 84 (303)
|+....+++|.-..+...|+..+++++.|||.|+.+..||+.-.. +. .+. .-+-|+..|
T Consensus 155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~-----------------i~~---n~kvH~~GV 213 (339)
T KOG0280|consen 155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF-----------------IWH---NSKVHTSGV 213 (339)
T ss_pred eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce-----------------eee---cceeeecce
Confidence 445558999999999999998888999999999999999985111 10 010 123478888
Q ss_pred EEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---
Q 048118 85 LSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--- 160 (303)
Q Consensus 85 ~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--- 160 (303)
.+|.-+| .+.+++||+.|..|++||.+...+ ++... .-.+.|.-++++|.... .++.++.-.-.++-+.+++.
T Consensus 214 ~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-Pl~~~-~v~GGVWRi~~~p~~~~-~lL~~CMh~G~ki~~~~~~~~e~ 290 (339)
T KOG0280|consen 214 VSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-PLFKA-KVGGGVWRIKHHPEIFH-RLLAACMHNGAKILDSSDKVLEF 290 (339)
T ss_pred EEEecCCCCCceEEEeccccceeeeehhcccC-ccccC-ccccceEEEEecchhhh-HHHHHHHhcCceEEEecccccch
Confidence 8888776 577999999999999999864221 11111 22356888999986533 23333333334555544322
Q ss_pred --eEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEE-EEeC
Q 048118 161 --LRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVIL-LWDL 198 (303)
Q Consensus 161 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~-iwd~ 198 (303)
.....+.|.+-+..-.|......|++++ .|+.++ +|-.
T Consensus 291 ~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 291 QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred heeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 2233455655555556644444677765 466644 6643
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=7.5e-08 Score=84.60 Aligned_cols=156 Identities=14% Similarity=0.230 Sum_probs=113.4
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee-------------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-------------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD 148 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 148 (303)
....++.|+....+++.||.||.+++-.+..... ..-+..++|+..|..+.|+-+. ..+-+...+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--QKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc--ccccccCCC
Confidence 3467999999999999999999999986532110 1123446899999999998763 468888999
Q ss_pred CcEEEEECCCceeEEEEcC--CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eE
Q 048118 149 RTVKVWNLSNCKLRATLAG--HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YW 224 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~ 224 (303)
|.|.+|-+.++....++.. ..+.|-+++|+.+|..++..-.||.|.+=.+. |..++.-. .+.....+.|++|. ..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeecccHHHH
Confidence 9999999877765433322 34568899999999999999999998776654 33333221 22344567899985 45
Q ss_pred EEEEcCCcEEEEeCCC
Q 048118 225 LCAATEQSIKIWDLES 240 (303)
Q Consensus 225 l~~~~~~~i~iwd~~~ 240 (303)
|+.-.+|.+.+||-+.
T Consensus 172 Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQG 187 (1189)
T ss_pred HhhhcCCcEEEecccc
Confidence 5666789999999754
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=2.2e-08 Score=85.43 Aligned_cols=168 Identities=21% Similarity=0.310 Sum_probs=116.2
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc--eee---eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE--CKY---TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~--~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~ 150 (303)
.|.||+..|..+.--.+...+++++.|++|++|.+..+ ... .......|+.+|..+.|-.+- .. .++.||-
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l--r~--i~ScD~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL--RS--IASCDGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc--ce--eeeccCc
Confidence 36799999988876666677999999999999987432 111 112234678888888886542 12 3567999
Q ss_pred EEEEECCCceeEEEEc--CCCCCeeEEEECCC--CCEEEEE-eCCCeEEEEeCCCCceEEEec------CCCeEEEEEEc
Q 048118 151 VKVWNLSNCKLRATLA--GHTGYVNTVAVSPD--GSLCASG-GKDGVILLWDLAEGKRLYSLD------AGAVIHALCFS 219 (303)
Q Consensus 151 i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~--~~~l~~~-~~d~~v~iwd~~~~~~~~~~~------~~~~v~~~~~s 219 (303)
|++||..-+.+...+. ...+.+..+..-|+ ...++.+ +...+|+++|.+..+....+. ....+++++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987665543222 12234455555453 3344444 678999999999877544332 23568899999
Q ss_pred CCCeEEEEE-cCCcEEEEeCCCCceeeee
Q 048118 220 PNRYWLCAA-TEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 220 ~~~~~l~~~-~~~~i~iwd~~~~~~~~~~ 247 (303)
+.|++++++ +.|.|.+.|.++|+++...
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 999888765 7899999999999987543
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=4.1e-07 Score=70.73 Aligned_cols=203 Identities=14% Similarity=0.201 Sum_probs=106.8
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC------CCcEEEEECCCceeEE
Q 048118 90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW------DRTVKVWNLSNCKLRA 163 (303)
Q Consensus 90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------dg~i~iwd~~~~~~~~ 163 (303)
+-.+..++++..|+.+.+++........-+....+.+ -.+.+.-.. ..++.... -+..+.|+++..+...
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~---~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH---GNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec---ccEEecCCcceEeeccceeeeccccccccc
Confidence 3345678899999999999864311100000000111 011111111 11222222 2345566665433221
Q ss_pred EEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCC--CeEEEEEcCCcEEEEeC
Q 048118 164 TLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN--RYWLCAATEQSIKIWDL 238 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~ 238 (303)
.-..-...|++++-+|..+ .+++|+.||.+.+||.+........ .+...+..+-|+|. ..+++++.||.+..||.
T Consensus 174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 1111123488999999655 5677889999999999876433222 24578899999996 46888999999999997
Q ss_pred CCCceeeeeeeccc-cccccccCccce----eeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 239 ESKSIVEDLKVDLK-TEAEKSEATTAT----TTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
.+ .++..-.-... ......+..... ..+.....-+++ |.--|..|++|++-+.|.+++
T Consensus 254 s~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 254 ST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CC-ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 64 22221000000 000000000000 011111122233 334588999999999998874
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=6e-08 Score=85.41 Aligned_cols=200 Identities=19% Similarity=0.296 Sum_probs=132.4
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC---
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN--- 158 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~--- 158 (303)
+.+..+..+|.|+-++.++.-|- .+-|+...............-.+..+.|+|.....+-++......-.+|.+..
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred CcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 45567788888887777776553 34444322111111111112235678888877666666666666666787743
Q ss_pred ceeEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCc-eEEEec-CCCeEEEEEEcCC-CeEEEEEcCCcEE
Q 048118 159 CKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGK-RLYSLD-AGAVIHALCFSPN-RYWLCAATEQSIK 234 (303)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~-~~~l~~~~~~~i~ 234 (303)
+.....+-+|...|+.+-|+|+.. .+++++-|-.+..||+++.. +++.+. ......++.|+-. ...++.+..+.|+
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 344455678899999999999765 78999999999999998754 444442 3455667888764 5677778888999
Q ss_pred EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC-CCEEEEeecCCeEEEEecc
Q 048118 235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-GSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~gs~Dg~v~~w~~~ 301 (303)
+||++.+... ...++++...+..++|... ...+.+.+.||+|+.||-.
T Consensus 184 vwd~r~gs~p-------------------l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 184 VWDLRKGSTP-------------------LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred EEeccCCCcc-------------------eEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 9999877532 2233444444566666543 4568899999999999865
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=7.5e-06 Score=71.32 Aligned_cols=153 Identities=11% Similarity=0.065 Sum_probs=92.6
Q ss_pred CEEEEEEeeCCCE-EEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC--CcEEEEEC
Q 048118 83 DVLSVAFSIDNRQ-IVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD--RTVKVWNL 156 (303)
Q Consensus 83 ~i~~i~~~~~~~~-l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d--g~i~iwd~ 156 (303)
.+..-.|+|+|+. ++..+.+ ..|.++|+.+.....+... ........|+|++.. .+++.+.+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---QGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---CCcEEeeEECCCCCE-EEEEEccCCCcEEEEEEC
Confidence 5667899999984 5544443 4566777755444333321 223456779998743 33444433 46777888
Q ss_pred CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-C--
Q 048118 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-E-- 230 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-- 230 (303)
.+++.. .+..+........|+|||+.|+..+. .+ .|.+.|+.+++.......+.. ...|+|+|..++... .
T Consensus 265 ~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 265 NTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred CCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCC
Confidence 777643 34433333445689999998776653 23 678888877665322221221 248999997665442 1
Q ss_pred -------CcEEEEeCCCCc
Q 048118 231 -------QSIKIWDLESKS 242 (303)
Q Consensus 231 -------~~i~iwd~~~~~ 242 (303)
..|++.|+++++
T Consensus 342 ~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred cccCCCCcEEEEEECCCCC
Confidence 268888887765
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=5.7e-08 Score=54.16 Aligned_cols=34 Identities=38% Similarity=0.708 Sum_probs=32.1
Q ss_pred ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 048118 76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 109 (303)
Q Consensus 76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~ 109 (303)
.+.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678999999999999999999999999999997
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.69 E-value=1.6e-05 Score=62.94 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=70.2
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCC----CCccceEEEEEcCCCC----CCEEEEEeCCCcEEEEEC
Q 048118 85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD----AHTEWVSCVRFSPNTL----QPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~----~~~~~~~~~dg~i~iwd~ 156 (303)
..++|+||+.+||.+...|+|+++|+.+...+.+.... .-...|..+.|-+... ...++.....|.++-|-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 46999999999999999999999999876554432211 1124566666654321 125677788888887765
Q ss_pred CC-----ceeEEE--EcC-CCCCeeEEEECCCCCEEEEEeC
Q 048118 157 SN-----CKLRAT--LAG-HTGYVNTVAVSPDGSLCASGGK 189 (303)
Q Consensus 157 ~~-----~~~~~~--~~~-~~~~i~~~~~~~~~~~l~~~~~ 189 (303)
.. .+.... +.. +...|+++.++|..++|++|+.
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 22 122222 222 3568999999999998887764
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.68 E-value=1.4e-05 Score=67.88 Aligned_cols=114 Identities=23% Similarity=0.315 Sum_probs=83.7
Q ss_pred ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCCC
Q 048118 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAEG 201 (303)
Q Consensus 125 ~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~ 201 (303)
.++|...+|.|.+.+..+++|-.+..+-++|++.+ ++..+. ...=..+.|+|.+++++.++- .|.+-+||....
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 56799999999887777788888999999999776 443333 334456789999999988765 478999998776
Q ss_pred ceEE-EecCCCeEEEEEEcCCCeEEEEEc-------CCcEEEEeCCCCc
Q 048118 202 KRLY-SLDAGAVIHALCFSPNRYWLCAAT-------EQSIKIWDLESKS 242 (303)
Q Consensus 202 ~~~~-~~~~~~~v~~~~~s~~~~~l~~~~-------~~~i~iwd~~~~~ 242 (303)
.... .+. .....-+.|+|+++++-.+. |..|.+||+....
T Consensus 351 f~~~~~~~-~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 351 FKVAGAFN-GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred eEEEEEee-cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 5544 444 33344567999998765542 6789999986543
No 291
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.5e-06 Score=72.69 Aligned_cols=218 Identities=18% Similarity=0.221 Sum_probs=141.7
Q ss_pred cceeecccccccccceeeeecCCCCCcEEEEecC-CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceeccc
Q 048118 3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASR-DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHT 81 (303)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~ 81 (303)
.+.+.+.++++|-..|.+++.+.++ -++.|.+. |..++++|+..-.......+.-+++
T Consensus 41 sGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg-------------------- 99 (558)
T KOG0882|consen 41 SGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG-------------------- 99 (558)
T ss_pred cceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCC--------------------
Confidence 4567777899999999999888664 68888888 9999999987532211111111111
Q ss_pred CCEEEEEEee-CC---CEEE-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 82 KDVLSVAFSI-DN---RQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 82 ~~i~~i~~~~-~~---~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
.+.|.. .| ..++ +.-.++.+.++|-.+..-........|..+|.++.++|.+ ..+++....|.|..|..
T Consensus 100 ----~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~--Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 100 ----FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG--DSAVSIDISGMVEYWSA 173 (558)
T ss_pred ----ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc--cceeeccccceeEeecC
Confidence 111211 11 1232 2335677888886443211122234688899999999875 35778888899999987
Q ss_pred CC------ceeEE---------EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-----------C
Q 048118 157 SN------CKLRA---------TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-----------G 210 (303)
Q Consensus 157 ~~------~~~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----------~ 210 (303)
.. .+... .+.......+++.|+|++..+.+-+.|.+|+++++++++.++.++. .
T Consensus 174 e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~ 253 (558)
T KOG0882|consen 174 EGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP 253 (558)
T ss_pred CCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc
Confidence 52 11111 1222345678999999999999999999999999998865443310 0
Q ss_pred C-----------------------eEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118 211 A-----------------------VIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 211 ~-----------------------~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~ 247 (303)
. .-..+.|...+.+|..++-=-|++.++.++..++.+
T Consensus 254 y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 254 YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 0 122356777777777776667899999888776654
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=0.00012 Score=59.23 Aligned_cols=191 Identities=19% Similarity=0.174 Sum_probs=113.2
Q ss_pred EEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEc-CCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118 86 SVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFS-PNTLQPTIVSASWDRTVKVWNLSNCKLRA 163 (303)
Q Consensus 86 ~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 163 (303)
+..|.+ ++.++.+-...+.|..|+..+......... . ...+.+. ++ ..++.+.. +.+.++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----~-~~G~~~~~~~---g~l~v~~~-~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP----G-PNGMAFDRPD---GRLYVADS-GGIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS----S-EEEEEEECTT---SEEEEEET-TCEEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC----C-CceEEEEccC---CEEEEEEc-CceEEEecCCCcEEE
Confidence 567887 666677766788899998866544332211 1 4566676 44 34555554 455556988876543
Q ss_pred EEcC-----CCCCeeEEEECCCCCEEEEEeCC--------CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE--E
Q 048118 164 TLAG-----HTGYVNTVAVSPDGSLCASGGKD--------GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA--A 228 (303)
Q Consensus 164 ~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~ 228 (303)
.... .....+.+++.|+|++.++.... |.+..++.. ++.......-...+.++|+|++..|.. +
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence 3322 23467899999999977776543 567777776 443333333455788999999865543 3
Q ss_pred cCCcEEEEeCCCCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 229 TEQSIKIWDLESKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 229 ~~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
..+.|+.|++..... +...+... .+.........+++..+|.+.++....+.|.+++.
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFI--------------DFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEE--------------E-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred ccceeEEEeccccccceeeeeeEE--------------EcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 467899999864322 22111100 01111123455777788877777777778877764
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.65 E-value=1.1e-06 Score=72.17 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=98.8
Q ss_pred eecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEE-
Q 048118 21 IATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSA- 99 (303)
Q Consensus 21 v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~- 99 (303)
+..++. .+++|.+-.+....+++.....+. ..... ++++ ...-+.+.+..+......+
T Consensus 68 ~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~-~kl~~--------~~~v-----------~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 68 VLTSDS-GRLVAVATSSKQRAVFDYRENPKG-AKLLD--------VSCV-----------PKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccCCC-ceEEEEEeCCCceEEEEEecCCCc-ceeee--------Eeec-----------ccCcceeeeeeccceEEEEe
Confidence 345543 467777777777778877543320 00000 0000 1122334444443333333
Q ss_pred --eCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE-EEEcCCCCCeeEEE
Q 048118 100 --SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVA 176 (303)
Q Consensus 100 --~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~ 176 (303)
+....+.+|.... ......-+|...+..++++|++ ..++++..|+.||+-.....-.. .-.-||+..|..++
T Consensus 127 kagD~~~~di~s~~~---~~~~~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 127 KAGDVYSFDILSADS---GRCEPILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred ecCCceeeeeecccc---cCcchhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 3334444554321 1122223677788999999997 57999999999998654332222 33457999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCceEEEec
Q 048118 177 VSPDGSLCASGGKDGVILLWDLAEGKRLYSLD 208 (303)
Q Consensus 177 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 208 (303)
+-+ ++.|+++|.|+++++||+++++.+.+++
T Consensus 202 l~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 LTD-NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ecc-CceeeecCCCCcEEEEecccCCcccccc
Confidence 876 4568999999999999999999887664
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=5.2e-05 Score=60.97 Aligned_cols=180 Identities=15% Similarity=0.149 Sum_probs=108.9
Q ss_pred CCCEEEEEeCCCcEEEEec-CCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-cCCC
Q 048118 92 DNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHT 169 (303)
Q Consensus 92 ~~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~ 169 (303)
++.++++++.++.|..||. .+...+........... . ... ...++.++.++.++.+|..+++..... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~--~~~----~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P--VVD----GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E--EEE----TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e--eec----ccccccccceeeeEecccCCcceeeeeccccc
Confidence 4566777789999999997 44444443322111111 1 111 135666778889999999999887763 3221
Q ss_pred C---CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC-----e-------EEEEEEcCCCeEEEEEcCCcEE
Q 048118 170 G---YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-----V-------IHALCFSPNRYWLCAATEQSIK 234 (303)
Q Consensus 170 ~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~-------v~~~~~s~~~~~l~~~~~~~i~ 234 (303)
. ..........+..++.+..++.+..+|+++|+.+....... . ...+.+. ++.++++..++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~~~ 186 (238)
T PF13360_consen 108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYVSSGDGRVV 186 (238)
T ss_dssp CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TTEEEEECCTSSEE
T ss_pred cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CCEEEEEcCCCeEE
Confidence 1 11122222237788888889999999999999887764321 1 1233333 45666666677644
Q ss_pred EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
.+|+++++.+.... ... .. ....+++..|++++.||.+..||+..
T Consensus 187 ~~d~~tg~~~w~~~--~~~--------------------~~-~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 187 AVDLATGEKLWSKP--ISG--------------------IY-SLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEETTTTEEEEEEC--SS---------------------EC-ECEECCCTEEEEEETTTEEEEEETTT
T ss_pred EEECCCCCEEEEec--CCC--------------------cc-CCceeeCCEEEEEeCCCEEEEEECCC
Confidence 44999887543111 000 00 11346778888888999999999853
No 295
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.60 E-value=3.7e-05 Score=66.50 Aligned_cols=214 Identities=13% Similarity=0.146 Sum_probs=121.6
Q ss_pred CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 048118 28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKL 107 (303)
Q Consensus 28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~v 107 (303)
+++++.++.++.|..+|...++...... +.. .+ ... . ..++..++.++.++.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~---~~~--------------~~---~~~---p--~v~~~~v~v~~~~g~l~a 119 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVD---LDE--------------RL---SGG---V--GADGGLVFVGTEKGEVIA 119 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeec---CCC--------------Cc---ccc---e--EEcCCEEEEEcCCCEEEE
Confidence 3567888888888888876544322111 000 00 011 1 123567777888899988
Q ss_pred EecC-CceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCee-----EEEECCCC
Q 048118 108 WNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN-----TVAVSPDG 181 (303)
Q Consensus 108 w~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-----~~~~~~~~ 181 (303)
+|.. ++..+..... ..+. -.|--....++.++.++.+..+|.++++.+.++........ +... .+
T Consensus 120 ld~~tG~~~W~~~~~----~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~ 190 (377)
T TIGR03300 120 LDAEDGKELWRAKLS----SEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--AD 190 (377)
T ss_pred EECCCCcEeeeeccC----ceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--EC
Confidence 8874 3333322111 1111 11110123567778899999999999887766543322111 1111 12
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEecCCCe-----------E-EEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118 182 SLCASGGKDGVILLWDLAEGKRLYSLDAGAV-----------I-HALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 182 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~ 249 (303)
..++.+..++.+..+|+++|+.+.+...... + .+..+ .++.+++.+.++.++.||.++++++.....
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence 4677788899999999999987765431100 0 01111 245666777899999999999887654321
Q ss_pred ccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
. .. . .....+..+++++.||.++.+|.
T Consensus 270 ~--------~~--------------~--~p~~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 270 S--------SY--------------Q--GPAVDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred C--------Cc--------------c--CceEeCCEEEEECCCCeEEEEEC
Confidence 0 00 0 01124566777777888777775
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2.6e-05 Score=69.74 Aligned_cols=254 Identities=15% Similarity=0.135 Sum_probs=152.2
Q ss_pred eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118 6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85 (303)
Q Consensus 6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~ 85 (303)
++-|.++.|+ -.++.|+|. ++||-|+. ..|-+=|...-. ..+....|...|..+.|.|..--
T Consensus 8 tlpG~l~~sN--~~A~Dw~~~--GLiAygsh-slV~VVDs~s~q-----~iqsie~h~s~V~~VrWap~~~p-------- 69 (1062)
T KOG1912|consen 8 TLPGPLSRSN--RNAADWSPS--GLIAYGSH-SLVSVVDSRSLQ-----LIQSIELHQSAVTSVRWAPAPSP-------- 69 (1062)
T ss_pred cCCCCCCccc--ccccccCcc--ceEEEecC-ceEEEEehhhhh-----hhhccccCccceeEEEeccCCCc--------
Confidence 4556677775 567888875 36666654 455555543211 11222233334444433332100
Q ss_pred EEEEeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC--CCEEEEEeCCCcEEEEECCCcee
Q 048118 86 SVAFSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL--QPTIVSASWDRTVKVWNLSNCKL 161 (303)
Q Consensus 86 ~i~~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~dg~i~iwd~~~~~~ 161 (303)
.-.++|. .-++|++...|.|.+||...... +-....+..++..++|-|... ...+++.....++.+|+..+++.
T Consensus 70 ~~llS~~~~~lliAsaD~~GrIil~d~~~~s~--~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 70 RDLLSPSSSQLLIASADISGRIILVDFVLASV--INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred hhccCccccceeEEeccccCcEEEEEehhhhh--hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 0001111 12577888889999999753221 112234566778888876432 23566677778999999888887
Q ss_pred EEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCC-c-----eEEEecCC--------------C---------
Q 048118 162 RATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEG-K-----RLYSLDAG--------------A--------- 211 (303)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~-~-----~~~~~~~~--------------~--------- 211 (303)
..++........++.+.| +.+++..-+..|.+-+.+.-.. + ....+... .
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 776665566778899999 7778877778888888775321 1 11111110 0
Q ss_pred ----eEEEEEEcCC-CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC--C
Q 048118 212 ----VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG--S 284 (303)
Q Consensus 212 ----~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~--~ 284 (303)
..-.++|+|. ++.+.......+.++|++....+..+.+... ++.-+.|-|++ .
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--------------------~akfv~vlP~~~rd 287 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--------------------GAKFVDVLPDPRRD 287 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--------------------CcceeEeccCCCcc
Confidence 1223678887 4667777788999999986665554443211 11225566665 4
Q ss_pred EEEEeecCCeEEEEe
Q 048118 285 TLFSGYTDGVIRVWG 299 (303)
Q Consensus 285 ~l~~gs~Dg~v~~w~ 299 (303)
.|++...||.+.+|-
T Consensus 288 ~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 288 ALFCLHSNGRLTIRV 302 (1062)
T ss_pred eEEEEecCCeEEEEE
Confidence 799999999999984
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=4.2e-06 Score=74.75 Aligned_cols=183 Identities=15% Similarity=0.222 Sum_probs=121.4
Q ss_pred ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118 15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR 94 (303)
Q Consensus 15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 94 (303)
.+.+++.+++ +.+|+-|.-+|.+.+.+.+....+ ...|+.. ..+|+
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~~~-------------------------~~~~s~~------~~~Ge 84 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNPKT-------------------------NFDHSSS------ILEGE 84 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCcccc-------------------------ccccccc------ccCCc
Confidence 3567777775 468999999999999987532110 1123322 56799
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC---CCEEEEEeCCCcEEEEECC--CceeEEEEcCCC
Q 048118 95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL---QPTIVSASWDRTVKVWNLS--NCKLRATLAGHT 169 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~dg~i~iwd~~--~~~~~~~~~~~~ 169 (303)
+++||+.||+|.|-...+........ -..++.+++++|+-. ...+++||..| +.++.-+ +.+-........
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 99999999999987654332222111 134588999999721 23588899888 7766431 112112344556
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC-------eEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-------VIHALCFSPNRYWLCAATEQSIKIWDLE 239 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 239 (303)
++|.++.|. |.++|-++.+| |+++|..+++.+..++... ....+.|.++. .|+.+...+|++..++
T Consensus 161 G~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 161 GPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIK 233 (846)
T ss_pred cceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEe
Confidence 899999996 77888887665 8999999998887664321 23456777554 4566777788888876
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=7.5e-05 Score=65.16 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=72.6
Q ss_pred ceEEEEEcCCCCCCEEEEEeC---CCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE-eCC--CeEEEEeCCC
Q 048118 127 WVSCVRFSPNTLQPTIVSASW---DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG-GKD--GVILLWDLAE 200 (303)
Q Consensus 127 ~i~~~~~~~~~~~~~~~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d--~~v~iwd~~~ 200 (303)
......|+|++.. .++..+. +..|.++|+.+++..... ...+......|+|||+.++.. +.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~-~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQT-AFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCc-EEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 4567889999743 2333222 356888999887654432 244556678899999876543 333 5678888877
Q ss_pred CceEEEec-CCCeEEEEEEcCCCeEEEEEcCC----cEEEEeCCCCce
Q 048118 201 GKRLYSLD-AGAVIHALCFSPNRYWLCAATEQ----SIKIWDLESKSI 243 (303)
Q Consensus 201 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~----~i~iwd~~~~~~ 243 (303)
++.. .+. .........|+|||..++..++. .|++.|+.+++.
T Consensus 267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 6533 332 22223345799999776665543 688888877654
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=5.8e-06 Score=74.91 Aligned_cols=181 Identities=14% Similarity=0.209 Sum_probs=118.4
Q ss_pred CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC
Q 048118 92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171 (303)
Q Consensus 92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 171 (303)
+++.++-|+.-..+..+|+.+........ .....+.-++.+. ..+.+|...|.|.+-|.++.+...++..|++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~--v~a~~v~imR~Nn----r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN--VSASGVTIMRYNN----RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS 219 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee--ccCCceEEEEecC----cEEEeecccceEEeecCCcCceeeeeeccccc
Confidence 34556666666667777775443222211 1122244444432 36888999999999999999999999999999
Q ss_pred eeEEEECCCCCEEEEEeCC---------CeEEEEeCCCCceEEEecCCCeEEEEEEcCC--CeEEEEEcCCcEEEEeC--
Q 048118 172 VNTVAVSPDGSLCASGGKD---------GVILLWDLAEGKRLYSLDAGAVIHALCFSPN--RYWLCAATEQSIKIWDL-- 238 (303)
Q Consensus 172 i~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~-- 238 (303)
|.++.. .|+.|++++.. .-|+|||++.-+.+..++-.....=+.|.|. ..+++++..|+..+-|.
T Consensus 220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccc
Confidence 987766 58889888754 3578999987765544432222233456665 34556667788777762
Q ss_pred -CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118 239 -ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG 299 (303)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~ 299 (303)
.+... ......-...++..+++|+.+..|+.|..+|.|.+|-
T Consensus 298 lsNP~~-------------------~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPA-------------------GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCcc-------------------ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 21100 0001111233467899999999999999999999994
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=0.00047 Score=56.35 Aligned_cols=206 Identities=16% Similarity=0.240 Sum_probs=122.6
Q ss_pred eeeecCCCCCcEEEEecCCCc-EEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118 19 TAIATPIDNSDMIVTASRDKS-IIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV 97 (303)
Q Consensus 19 ~~v~~~~~~~~~~~t~s~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~ 97 (303)
..++.+|.....++.+..-|+ +.+||....... ..+.-.+...|.||. .|+++|++|+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~---------------~~~~a~~gRHFyGHg------~fs~dG~~Ly 66 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL---------------QRLWAPPGRHFYGHG------VFSPDGRLLY 66 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee---------------eEEcCCCCCEEecCE------EEcCCCCEEE
Confidence 456677766777777777664 567887543211 111222344577764 6999999998
Q ss_pred EEeCC-----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe----------------CCCcEEEEEC
Q 048118 98 SASRD-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS----------------WDRTVKVWNL 156 (303)
Q Consensus 98 t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------~dg~i~iwd~ 156 (303)
|.-.| |.|-|||...... .+.....+--.-..+.+.|++....++-|+ .+-++.+.|.
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~~-ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGYR-RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred EeccccCCCcEEEEEEECcCCcE-EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 87554 6899999862211 121111121122345566765221122222 2345666677
Q ss_pred CCceeEEE--E--cCCCCCeeEEEECCCCCEEEEEeCCC-------eEEEEeCCCCceEEEec--------CCCeEEEEE
Q 048118 157 SNCKLRAT--L--AGHTGYVNTVAVSPDGSLCASGGKDG-------VILLWDLAEGKRLYSLD--------AGAVIHALC 217 (303)
Q Consensus 157 ~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~--------~~~~v~~~~ 217 (303)
.+++++.+ + ..|..+|.-+++.++|..++..-..| -+-+++ .++.+..+. ....+-+++
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence 77776655 3 33677888999999887665443333 122232 222222221 235789999
Q ss_pred EcCCCeEEEEEc--CCcEEEEeCCCCceeeeee
Q 048118 218 FSPNRYWLCAAT--EQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 218 ~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~ 248 (303)
+++++.++++++ .+.+.+||..+++++....
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 999987776665 6789999999999886554
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=6.3e-07 Score=72.41 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=98.6
Q ss_pred EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc----eeEEEEcCCCCCe
Q 048118 97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC----KLRATLAGHTGYV 172 (303)
Q Consensus 97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i 172 (303)
++.+.+..|-+-+..+.-. +... ....|.++.|...+ +.+..|+.+|.|..+|++.. ......--|...|
T Consensus 228 fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV 301 (425)
T ss_pred ecccccceeEEEEeecccc---cccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence 4455666677777644321 1111 23457777787643 68899999999999999754 1222223377888
Q ss_pred eEEEECC-CCCEEEEEeCCCeEEEEeCCCCce---EEEecCCCeEEEEEE-----cC-CCeEEEEEcCCcEEEEeCCCCc
Q 048118 173 NTVAVSP-DGSLCASGGKDGVILLWDLAEGKR---LYSLDAGAVIHALCF-----SP-NRYWLCAATEQSIKIWDLESKS 242 (303)
Q Consensus 173 ~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~-----s~-~~~~l~~~~~~~i~iwd~~~~~ 242 (303)
+++..-. ++++|.+.+-+|+|++||++.-++ +.+.. ..|+..+. .+ +|.+++++.|-..+||.++.+.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 9887655 678888888999999999986555 44432 22333332 33 3677788889999999999999
Q ss_pred eeeeeee
Q 048118 243 IVEDLKV 249 (303)
Q Consensus 243 ~~~~~~~ 249 (303)
++.+++.
T Consensus 380 Ll~tipf 386 (425)
T KOG2695|consen 380 LLCTIPF 386 (425)
T ss_pred eeeccCC
Confidence 9877654
No 302
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.43 E-value=2.5e-05 Score=65.75 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=78.7
Q ss_pred CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe----------CCCeEEEEeCCCCceEEEecCCC-------
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG----------KDGVILLWDLAEGKRLYSLDAGA------- 211 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~------- 211 (303)
+.|.+.|..+++...++.....+- .+ ++|+++.|.++. .+..|.+||..+.+.+..+..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 789999999999888776544333 24 999999876654 47899999999999998886533
Q ss_pred -eEEEEEEcCCCeEEEEEc---CCcEEEEeCCCCceeeeeee
Q 048118 212 -VIHALCFSPNRYWLCAAT---EQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 212 -~v~~~~~s~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~ 249 (303)
....++++|+|.++.+.. ++.+.+.|+.+++++.++.+
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 234789999998777653 78999999999999988775
No 303
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.42 E-value=0.00021 Score=61.76 Aligned_cols=132 Identities=20% Similarity=0.203 Sum_probs=85.6
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CC-eEEEEEE
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GA-VIHALCF 218 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~-~v~~~~~ 218 (303)
.++.++.+|.++.+|.++++....... ........ .+..+.+++.||.+..+|..+++.+..... .. ...+...
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 577788899999999998876655432 11112222 356777788899999999999988766521 11 1122222
Q ss_pred cCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118 219 SPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 219 s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w 298 (303)
.++.+++.+.+|.|+++|.++++++..++..-.. ...+-.. -+..|+.++.||.|..|
T Consensus 319 -~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-------------------~~~sp~~--~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 -VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-------------------IASPPVV--VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-------------------cccCCEE--ECCEEEEEeCCceEEEe
Confidence 2456677778999999999999988765532100 0001111 13458889999999876
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=1.4e-06 Score=70.39 Aligned_cols=129 Identities=17% Similarity=0.255 Sum_probs=95.1
Q ss_pred ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce---eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC---KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
.++.|.++.|...+.++..|+..|.|...|+.... .+..+. -.|...|+++..-.-. +.++++.+.+|.|.+||+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s-~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFS-QQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccc-cceEeeccCcCceeEeee
Confidence 45678899999988999999999999999985321 111111 1255566766554422 357888899999999999
Q ss_pred CCcee---EEEEcCCCCCe--eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC
Q 048118 157 SNCKL---RATLAGHTGYV--NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG 210 (303)
Q Consensus 157 ~~~~~---~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 210 (303)
+--++ +.++.+|.+.- .-+.+++....+++++.|...+||.++.++.+.+++..
T Consensus 329 R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 87666 78888886432 23456777778888999999999999999988887643
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.40 E-value=0.00064 Score=55.02 Aligned_cols=217 Identities=15% Similarity=0.138 Sum_probs=128.3
Q ss_pred eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe-eCCCEEEE
Q 048118 20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS-IDNRQIVS 98 (303)
Q Consensus 20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~-~~~~~l~t 98 (303)
+..|.+....++++--..+.|..|+........ -.......+.+. +++ .++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~g-~l~v 56 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------------IDLPGPNGMAFDRPDG-RLYV 56 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------------EESSSEEEEEEECTTS-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------------EecCCCceEEEEccCC-EEEE
Confidence 456676556677777778888888775432110 011225677888 554 5555
Q ss_pred EeCCCcEEEEecCCceeeeeecC--CC-CccceEEEEEcCCCCCCEEEEEeCC--------CcEEEEECCCceeEEEEcC
Q 048118 99 ASRDRTIKLWNTLGECKYTIQEG--DA-HTEWVSCVRFSPNTLQPTIVSASWD--------RTVKVWNLSNCKLRATLAG 167 (303)
Q Consensus 99 ~~~d~~i~vw~~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~~~~~~~~d--------g~i~iwd~~~~~~~~~~~~ 167 (303)
+...+ +.++|........+... .. .....+.+++.|++ ...++-... |.|..++.. ++......
T Consensus 57 ~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 57 ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence 55544 45558655433222221 11 34557889999986 344443322 457777776 44433332
Q ss_pred CCCCeeEEEECCCCCEEE-EEeCCCeEEEEeCCCCce-------EEEecCC-CeEEEEEEcCCCeEEE-EEcCCcEEEEe
Q 048118 168 HTGYVNTVAVSPDGSLCA-SGGKDGVILLWDLAEGKR-------LYSLDAG-AVIHALCFSPNRYWLC-AATEQSIKIWD 237 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~-------~~~~~~~-~~v~~~~~s~~~~~l~-~~~~~~i~iwd 237 (303)
.-...+.++|+|+++.|. +-+..+.|..+++..... +..+... ...-.+++.++|.+.+ ....+.|.++|
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 245568999999998775 556788999999853221 1222322 2467799998886544 44688999999
Q ss_pred CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEE-cCCCCEEEEe
Q 048118 238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNW-SVDGSTLFSG 289 (303)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sp~~~~l~~g 289 (303)
.+ ++++..+.+.. ..+++++| .|+.+.|++.
T Consensus 212 p~-G~~~~~i~~p~--------------------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 212 PD-GKLLREIELPV--------------------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TT-SCEEEEEE-SS--------------------SSEEEEEEESTTSSEEEEE
T ss_pred CC-ccEEEEEcCCC--------------------CCEEEEEEECCCCCEEEEE
Confidence 87 77777665421 13477888 4676655543
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=1.9e-07 Score=84.08 Aligned_cols=198 Identities=19% Similarity=0.287 Sum_probs=130.0
Q ss_pred ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118 9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88 (303)
Q Consensus 9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~ 88 (303)
..++.|....+|++|+.. .+.|+.|+-.|.|++++...+.. .+.+.+|.++|+.+.
T Consensus 1095 ~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~-----------------------e~s~ncH~SavT~ve 1150 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSM-----------------------EESVNCHQSAVTLVE 1150 (1516)
T ss_pred hhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccc-----------------------ccccccccccccccc
Confidence 467888889999999965 57899999999999998865321 124567888888888
Q ss_pred EeeCCCEEEEEeCCCc--EEEEecCCceeeeeecCCCCc-cceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118 89 FSIDNRQIVSASRDRT--IKLWNTLGECKYTIQEGDAHT-EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL 165 (303)
Q Consensus 89 ~~~~~~~l~t~~~d~~--i~vw~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 165 (303)
=+.+|..+++.+.-.. .-+|+.... .. ..|+ ..-.+++|+... +.. +.|+......+||..++....++
T Consensus 1151 Ps~dgs~~Ltsss~S~PlsaLW~~~s~-~~-----~~Hsf~ed~~vkFsn~~-q~r-~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1151 PSVDGSTQLTSSSSSSPLSALWDASST-GG-----PRHSFDEDKAVKFSNSL-QFR-ALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ccCCcceeeeeccccCchHHHhccccc-cC-----ccccccccceeehhhhH-HHH-HhcccccceEEEecccCcHHHHh
Confidence 7888887776655433 457886431 11 1121 123578887653 333 33445567889999987654442
Q ss_pred -cC---CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC
Q 048118 166 -AG---HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESK 241 (303)
Q Consensus 166 -~~---~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~ 241 (303)
.+ .+-.-+...|+|+..+++ .||. +||++..+.++.|+.-..-..=.|+|.|.-+..-+ .|||+++.
T Consensus 1223 lt~~~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS----EIwD~RTF 1293 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS----EIWDMRTF 1293 (1516)
T ss_pred cCcchhhhhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec----hhhhhHHH
Confidence 21 111225678999887764 5665 59999888887776433222335889886554433 48999887
Q ss_pred ceeeee
Q 048118 242 SIVEDL 247 (303)
Q Consensus 242 ~~~~~~ 247 (303)
+++..+
T Consensus 1294 ~lLh~V 1299 (1516)
T KOG1832|consen 1294 KLLHSV 1299 (1516)
T ss_pred HHHhcC
Confidence 776543
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.37 E-value=9.3e-05 Score=58.78 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=33.4
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe
Q 048118 169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 207 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 207 (303)
...|..|.+||||+.|++...+|.|.+|++.+-.....+
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 467889999999999999999999999999876555444
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.37 E-value=0.00049 Score=55.26 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=104.5
Q ss_pred CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 048118 28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKL 107 (303)
Q Consensus 28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~v 107 (303)
.+.+++++.++.|..||...++...... +. +.+. .. . ...+..++.+..++.+..
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~---~~--------------~~~~---~~----~-~~~~~~v~v~~~~~~l~~ 90 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFD---LP--------------GPIS---GA----P-VVDGGRVYVGTSDGSLYA 90 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEE---CS--------------SCGG---SG----E-EEETTEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEee---cc--------------cccc---ce----e-eecccccccccceeeeEe
Confidence 3567777899999999986554221111 00 0000 00 1 123345555667778888
Q ss_pred Eec-CCceeeeeecCC--CCc-cceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC----------ee
Q 048118 108 WNT-LGECKYTIQEGD--AHT-EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY----------VN 173 (303)
Q Consensus 108 w~~-~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i~ 173 (303)
+|. .++..+...... ... .......+. ...++.+..++.|..+|+++++.+......... +.
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD----GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDIN 166 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCSTB--SEEEEE----TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEE
T ss_pred cccCCcceeeeeccccccccccccccCceEe----cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccc
Confidence 884 344444421111 111 011122222 235777888999999999999987776553322 11
Q ss_pred EEEECCCCCEEEEEeCCCe-EEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceee
Q 048118 174 TVAVSPDGSLCASGGKDGV-ILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE 245 (303)
Q Consensus 174 ~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~ 245 (303)
.-....++ .+..++.++. +.+ |+.+++.+.... ......+....++.+++.+.++.|.+||+++++.+.
T Consensus 167 ~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 167 GSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred cceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 22222344 6666666775 555 999998776544 333333223334555556679999999999998753
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=1.7e-05 Score=70.82 Aligned_cols=152 Identities=15% Similarity=0.195 Sum_probs=108.0
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCC----------CCCEEEEEeCCCcEE
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT----------LQPTIVSASWDRTVK 152 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~dg~i~ 152 (303)
.-.+++|+|.| ++|-|+. ..|.+-|...- ..++..+.|...|..++|.|.. .+..++++...|.|.
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 34578899877 5665654 45777775432 2244445677889999998743 234678888899999
Q ss_pred EEECCCceeEEEEcCCCCCeeEEEECC---CC-CEEEEEeCCCeEEEEeCCCCceEEEecCCCe-EEEEEEcCCC--eEE
Q 048118 153 VWNLSNCKLRATLAGHTGYVNTVAVSP---DG-SLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNR--YWL 225 (303)
Q Consensus 153 iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-v~~~~~s~~~--~~l 225 (303)
+||......+..+..|..++..+.|-| +. ..|+.-....++.+||..+|+.++....... ..++.+.|-. .+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 999988887778888899999999865 33 3455555678999999999999988876544 4457777743 344
Q ss_pred EEEcCCcEEEEeC
Q 048118 226 CAATEQSIKIWDL 238 (303)
Q Consensus 226 ~~~~~~~i~iwd~ 238 (303)
..+..|.+.+-+.
T Consensus 173 ~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKD 185 (1062)
T ss_pred EEccCceEEEEec
Confidence 4556666666553
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=8.6e-05 Score=66.70 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=106.0
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~ 161 (303)
..+.+++++ ++.|+-|..+|.|.+++..+.. .... .|+.. +....++++|+.||.|.|-.+.+.+.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---DHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---ccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 445566655 4678899999999999876654 2111 12111 22235899999999999998877665
Q ss_pred EEEEcCCCCCeeEEEECCC-----CCEEEEEeCCCeEEEEeCC---CCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcE
Q 048118 162 RATLAGHTGYVNTVAVSPD-----GSLCASGGKDGVILLWDLA---EGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSI 233 (303)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d~~v~iwd~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i 233 (303)
..++.- ..++.+++++|+ .+.+++|+..| +.++.-+ ....+......+.|.++.|. |.++|-+.|--|
T Consensus 106 ~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv 181 (846)
T KOG2066|consen 106 ITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV 181 (846)
T ss_pred ceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc
Confidence 554442 468999999998 46889999888 7776532 11222122346789999985 678899999999
Q ss_pred EEEeCCCCceeeeeee
Q 048118 234 KIWDLESKSIVEDLKV 249 (303)
Q Consensus 234 ~iwd~~~~~~~~~~~~ 249 (303)
++||+.+++.+..++.
T Consensus 182 ~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPP 197 (846)
T ss_pred EEEeccccceeeccCC
Confidence 9999999888876654
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6.5e-05 Score=62.26 Aligned_cols=80 Identities=11% Similarity=0.207 Sum_probs=62.9
Q ss_pred cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118 10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89 (303)
Q Consensus 10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~ 89 (303)
-+.+|...|-.++|+|.+.+++..++-+.+|+|.|+...... ..|..| ..+++++|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-----------------------ssy~a~-~~~wSC~w 243 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-----------------------SSYIAY-NQIWSCCW 243 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceee-----------------------eheecc-CCceeeee
Confidence 456677889999999998889999999999999999753211 124445 68999999
Q ss_pred eeCC-CEEEEEeCCCcEEEEecCCc
Q 048118 90 SIDN-RQIVSASRDRTIKLWNTLGE 113 (303)
Q Consensus 90 ~~~~-~~l~t~~~d~~i~vw~~~~~ 113 (303)
..+. .++..|...|.|.+||....
T Consensus 244 Dlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 244 DLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ccCCcceeEEeccCceEEEEEccCC
Confidence 9875 46788889999999997543
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.23 E-value=0.0004 Score=65.35 Aligned_cols=199 Identities=16% Similarity=0.231 Sum_probs=121.8
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC--C--
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL--S-- 157 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~--~-- 157 (303)
+.|.++.|..++..++.+..+|.|.+.|........+ ..-...|.+.+|+|+. ..++-.+..+.+.+-+- .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv---g~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV---GNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee---eeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccch
Confidence 5799999999999888899999999987644322211 1234568999999986 34444555555544321 0
Q ss_pred -----------Cce--------eEEEEcCCC---------------------CCeeEEEECCCCCEEEEEe----CC-Ce
Q 048118 158 -----------NCK--------LRATLAGHT---------------------GYVNTVAVSPDGSLCASGG----KD-GV 192 (303)
Q Consensus 158 -----------~~~--------~~~~~~~~~---------------------~~i~~~~~~~~~~~l~~~~----~d-~~ 192 (303)
..+ ....+.+.. +.=+++.|--||+++|+.. .+ +.
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 000 001122110 1123588988999998832 23 79
Q ss_pred EEEEeCCCCceE-EEecCCCeEEEEEEcCCCeEEEEE----cCCcEEEEeCCCCceeeeeeeccccccccccCccceeec
Q 048118 193 ILLWDLAEGKRL-YSLDAGAVIHALCFSPNRYWLCAA----TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTI 267 (303)
Q Consensus 193 v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (303)
+++||.+ |..- ...+....-.+++|.|.|.++++- +++.|.+|.-+ |-.-.++.+. .
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~----------------~ 285 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLP----------------F 285 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccC----------------C
Confidence 9999976 3211 111223445679999999888764 46679999843 2111111110 0
Q ss_pred cccceeEEEEEEcCCCCEEEE---eecCCeEEEEecccC
Q 048118 268 KKKNIYCTSLNWSVDGSTLFS---GYTDGVIRVWGIGRY 303 (303)
Q Consensus 268 ~~~~~~~~~~~~sp~~~~l~~---gs~Dg~v~~w~~~~~ 303 (303)
.-....|..++|+.++..|++ ......|++|=+++|
T Consensus 286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 001112678999999998887 555556999999887
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=4.8e-05 Score=66.20 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=58.3
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCC
Q 048118 168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLES 240 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~ 240 (303)
....+.+++++|+...|+.|+.||.|.+||...+..... ...-....++|+|+|.++++++ .|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 456899999999999999999999999999877644322 4445677899999997776665 59999999753
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00097 Score=60.71 Aligned_cols=209 Identities=14% Similarity=0.192 Sum_probs=124.1
Q ss_pred eeecccccccccc-eeeeecCCCCCcEEEEecCCCc-----EEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee
Q 048118 5 LVLKGTMRAHTDM-VTAIATPIDNSDMIVTASRDKS-----IIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV 78 (303)
Q Consensus 5 ~~~~~~~~~h~~~-v~~v~~~~~~~~~~~t~s~d~~-----i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 78 (303)
+.+...+.++... |+.+- ..+..++|++.+.|+. ++||++.+..+... ..++....+.+. ...
T Consensus 54 ~~~~~~fqa~~~siv~~L~-~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s---------P~c~~~~ri~~~-~np 122 (933)
T KOG2114|consen 54 FQLIRGFQAYEQSIVQFLY-ILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS---------PQCLYEHRIFTI-KNP 122 (933)
T ss_pred ceeeehheecchhhhhHhh-cccCceEEEEEeecCCCCceEEEEecccccCCCCC---------cceeeeeeeecc-CCC
Confidence 3344456666666 44443 3344478999888765 89999976432210 111211111110 011
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCCCcEEEEe--cCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN--TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
-...++.+++.+.+-..++.|=.+|.|..+. +..+.............+|+.+.+..++.. .+. ......|..|.+
T Consensus 123 ~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s-~lF-v~Tt~~V~~y~l 200 (933)
T KOG2114|consen 123 TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS-VLF-VATTEQVMLYSL 200 (933)
T ss_pred CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce-eEE-EEecceeEEEEe
Confidence 1345778899999988899998999988874 221111223333445678999999876532 223 334567888888
Q ss_pred CCcee-EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE
Q 048118 157 SNCKL-RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA 228 (303)
Q Consensus 157 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 228 (303)
.+..+ ...+..|..++.|..+++....|++++ +.-+.+|+.....+-.++..+..-....+ ..|.++++.
T Consensus 201 ~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~~-~~g~~L~v~ 271 (933)
T KOG2114|consen 201 SGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLVF-SFGLLLCVT 271 (933)
T ss_pred cCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEEE-ecCEEEEEE
Confidence 75443 444667777889999988666566665 34689999876655555554433333333 245555554
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.13 E-value=0.00019 Score=62.55 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=60.4
Q ss_pred cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118 79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158 (303)
Q Consensus 79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~ 158 (303)
.....|.+++++|+.+.++.|+.||+|.+||.........+ ..-....++|||++ ..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k----a~~~P~~iaWHp~g--ai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK----AEFIPTLIAWHPDG--AIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee----ecccceEEEEcCCC--cEEEEEcCCceEEEEEeec
Confidence 46678999999999999999999999999997544332221 12335779999987 5788999999999999865
Q ss_pred cee
Q 048118 159 CKL 161 (303)
Q Consensus 159 ~~~ 161 (303)
...
T Consensus 331 spi 333 (545)
T PF11768_consen 331 SPI 333 (545)
T ss_pred Ccc
Confidence 443
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.03 E-value=0.00042 Score=61.96 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=65.2
Q ss_pred CCcEEEEECCC-----ceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCce------------EEEecC
Q 048118 148 DRTVKVWNLSN-----CKLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGKR------------LYSLDA 209 (303)
Q Consensus 148 dg~i~iwd~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~------------~~~~~~ 209 (303)
++.|.+.|..+ .+....+.- ......+.++|||+++++++ .+.+|.|.|+.+.+. +.++..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 56799999887 344444443 34568899999999886665 599999999987553 333444
Q ss_pred CCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCC
Q 048118 210 GAVIHALCFSPNRYWLC-AATEQSIKIWDLES 240 (303)
Q Consensus 210 ~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~ 240 (303)
+..-...+|.++|...+ ..-|.+|..||+..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 44444578988876443 34588999999875
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.02 E-value=0.0053 Score=50.33 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=111.9
Q ss_pred EEEEEee-CCCEEEEEeCCCc-EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE-----eCCCcEEEEECC
Q 048118 85 LSVAFSI-DNRQIVSASRDRT-IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA-----SWDRTVKVWNLS 157 (303)
Q Consensus 85 ~~i~~~~-~~~~l~t~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~dg~i~iwd~~ 157 (303)
..++.+| .+..++.+-.-|. ..+||..+...............--...|++++. .+.+. ...|.|-+||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEEEECc
Confidence 3456666 3444555555543 4467765433322211111111112366888873 44443 335889999998
Q ss_pred -CceeEEEEcCCCCCeeEEEECCCCCEEEEEe-------CCC-----------eEEEEeCCCCceEEEec-----CCCeE
Q 048118 158 -NCKLRATLAGHTGYVNTVAVSPDGSLCASGG-------KDG-----------VILLWDLAEGKRLYSLD-----AGAVI 213 (303)
Q Consensus 158 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~d~-----------~v~iwd~~~~~~~~~~~-----~~~~v 213 (303)
+-+.+.++..|--.-..+.+.|+|+.|+++- +.| .+...|..+|+.+.+.. ....+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 5566777777665567788999998877662 112 33344555666554432 23468
Q ss_pred EEEEEcCCCeEEEEEcC-C-------cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCE
Q 048118 214 HALCFSPNRYWLCAATE-Q-------SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGST 285 (303)
Q Consensus 214 ~~~~~s~~~~~l~~~~~-~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 285 (303)
+.+++.++|..+.+... | -+.+++... .+..+.. +......-..|+-++++++++.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~-------------p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPA-------------PEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccC-------------ChHHHHhhCCceEEEEEeCCCCE
Confidence 88888888876665531 1 133333221 1111111 00011223467889999999998
Q ss_pred EEEeec-CCeEEEEecc
Q 048118 286 LFSGYT-DGVIRVWGIG 301 (303)
Q Consensus 286 l~~gs~-Dg~v~~w~~~ 301 (303)
+++.|. -|.+.+||..
T Consensus 231 ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAA 247 (305)
T ss_pred EEEECCCCCEEEEEECC
Confidence 865554 6788999763
No 318
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.0017 Score=56.86 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=80.1
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR 162 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~ 162 (303)
.+..+.++|+|+.++.+ .||.-.++.......... +.-....|.+. ..+++....+.|.++.-.+.+..
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-------G~g~~~vw~~~---n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-------GSGLSFVWSSR---NRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-------EE-SEEEE-TS---SEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-------CceeEEEEecC---ccEEEEECCCeEEEEEcCccccc
Confidence 45689999999988875 457777776433222111 11234667764 35777777888999743232222
Q ss_pred EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC
Q 048118 163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESK 241 (303)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~ 241 (303)
..++.. ..+..+-. |.+|+..+.+ .|.+||..+++.+..++... |..+.|++++.+++..++..+++++.+..
T Consensus 103 k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 103 KSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp -----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred eEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 223221 12333322 7777766554 89999999999999988653 88999999999999988889999876443
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0081 Score=55.04 Aligned_cols=197 Identities=15% Similarity=0.215 Sum_probs=116.5
Q ss_pred ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC-EEEEEEeeCCCE
Q 048118 17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD-VLSVAFSIDNRQ 95 (303)
Q Consensus 17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~-i~~i~~~~~~~~ 95 (303)
+|++++ +. ...+|.|+.||.|-+.+-.-. ... .+.++... |..+-...+..+
T Consensus 27 ~isc~~--s~-~~~vvigt~~G~V~~Ln~s~~------~~~------------------~fqa~~~siv~~L~~~~~~~~ 79 (933)
T KOG2114|consen 27 AISCCS--SS-TGSVVIGTADGRVVILNSSFQ------LIR------------------GFQAYEQSIVQFLYILNKQNF 79 (933)
T ss_pred ceeEEc--CC-CceEEEeeccccEEEecccce------eee------------------hheecchhhhhHhhcccCceE
Confidence 566653 33 467999999999888764211 001 12233333 222322333357
Q ss_pred EEEEeCCCc-----EEEEecCCc-----eee----eeec-CCC-CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC--
Q 048118 96 IVSASRDRT-----IKLWNTLGE-----CKY----TIQE-GDA-HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-- 157 (303)
Q Consensus 96 l~t~~~d~~-----i~vw~~~~~-----~~~----~~~~-~~~-~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-- 157 (303)
|++.+.|+. |++|++... +.. .+.. ..+ ...++.+++.+.+- ..+++|-.+|.|..+.-.
T Consensus 80 L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 80 LFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred EEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcch
Confidence 777777654 899987421 110 0111 111 24466778887762 478889999999988532
Q ss_pred -CceeEEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce-EEEe-cCCCeEEEEEEcCCCeEEEEEcCCcE
Q 048118 158 -NCKLRATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR-LYSL-DAGAVIHALCFSPNRYWLCAATEQSI 233 (303)
Q Consensus 158 -~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~i 233 (303)
+.-.+..+. ...++|+.+++..++..++.+..-.+|.+|.+....+ +... ..+...++.++++...-+.++...-+
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l 237 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFL 237 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceE
Confidence 111112221 2357999999988887633333455799999874442 2323 34567888888877664556666789
Q ss_pred EEEeCCCCc
Q 048118 234 KIWDLESKS 242 (303)
Q Consensus 234 ~iwd~~~~~ 242 (303)
++|+....+
T Consensus 238 ~fY~sd~~~ 246 (933)
T KOG2114|consen 238 YFYDSDGRG 246 (933)
T ss_pred EEEcCCCcc
Confidence 999986543
No 320
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00017 Score=62.32 Aligned_cols=111 Identities=19% Similarity=0.309 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-----------CCeEEEEe
Q 048118 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-----------DGVILLWD 197 (303)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------d~~v~iwd 197 (303)
+-+.|+|.+ .++++-- ..-|.+|--.+....+.+. | ..|.-+.|||+.+||++=+. ...+.|||
T Consensus 214 tyv~wSP~G--TYL~t~H-k~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKG--TYLVTFH-KQGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCc--eEEEEEe-ccceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 458899986 3566543 3446778766655445454 3 36788999999999988652 25899999
Q ss_pred CCCCceEEEecC---C-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCcee
Q 048118 198 LAEGKRLYSLDA---G-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIV 244 (303)
Q Consensus 198 ~~~~~~~~~~~~---~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~ 244 (303)
+++|.....+.. . ....-+.||-|+.++|....++|.||+...-.++
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~ll 339 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLL 339 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeee
Confidence 999988777653 2 2344578999999999888899999997664443
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.91 E-value=0.0027 Score=43.61 Aligned_cols=90 Identities=14% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEE
Q 048118 139 QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 218 (303)
Q Consensus 139 ~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~ 218 (303)
...|+.|+.|..||+|+- .+...++.. .+.|+.+.-... ..|+-+..+|+|-+|+- .+.++.+.....+.++++
T Consensus 15 ~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~ 88 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAF 88 (111)
T ss_pred cceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEE
Confidence 368999999999999974 355666654 456777766654 57888999999999975 456666666666666655
Q ss_pred cC-C--C--eEEEEEcCCcEE
Q 048118 219 SP-N--R--YWLCAATEQSIK 234 (303)
Q Consensus 219 s~-~--~--~~l~~~~~~~i~ 234 (303)
.. + | .++++-++|+|.
T Consensus 89 ~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 89 YDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EcCCCCCceEEEEEecCCeEE
Confidence 43 2 2 466666777764
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.90 E-value=0.013 Score=50.98 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=86.2
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--CCeEEEEEE
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAVIHALCF 218 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~ 218 (303)
.++.++.+|.+..+|..+++...+..- .....+.. .+..+..++.+|.+..+|..+++.+.+... .....+...
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 466677899999999998876544321 11112222 356677788899999999999987765432 111122122
Q ss_pred cCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118 219 SPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298 (303)
Q Consensus 219 s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w 298 (303)
-++.+++...+|.+++.|.++++++...++... ... .+-.. .+..|++++.||.|..+
T Consensus 334 -~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~------------------~~~-s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 334 -YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS------------------GFL-SEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC------------------cce-eCCEE--ECCEEEEEeCCceEEEE
Confidence 156777788899999999999988766543100 000 00111 24578899999999887
Q ss_pred ec
Q 048118 299 GI 300 (303)
Q Consensus 299 ~~ 300 (303)
++
T Consensus 392 ~~ 393 (394)
T PRK11138 392 TR 393 (394)
T ss_pred eC
Confidence 64
No 323
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00012 Score=64.07 Aligned_cols=90 Identities=24% Similarity=0.317 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCee-EEEECCCCCEEEEEeCCCeEEEEeCCCCceEEE
Q 048118 128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN-TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS 206 (303)
Q Consensus 128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 206 (303)
+.-+.|+|.. ..++.+..+|.+.++.++ .+...++.-+...++ +++|.|||+.|++|-.||+|++.|+.++..+..
T Consensus 23 i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 23 IKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred eEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 5567798864 578899999999999987 666777776677777 999999999999999999999999999988776
Q ss_pred --ecCCCeEEEEEEcC
Q 048118 207 --LDAGAVIHALCFSP 220 (303)
Q Consensus 207 --~~~~~~v~~~~~s~ 220 (303)
+.....|..+-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 34455666666653
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.86 E-value=0.0007 Score=59.18 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEE-eCCCCceEEE
Q 048118 128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW-DLAEGKRLYS 206 (303)
Q Consensus 128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iw-d~~~~~~~~~ 206 (303)
...+.++|++. ++..+.+|.-.+|......... .+....+.|.+.+ .+|+-...++|.++ ++. .+....
T Consensus 35 p~~ls~npngr---~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~-~~~~k~ 104 (443)
T PF04053_consen 35 PQSLSHNPNGR---FVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK-NEVVKS 104 (443)
T ss_dssp -SEEEE-TTSS---EEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE-E-TT--
T ss_pred CeeEEECCCCC---EEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCc-cccceE
Confidence 46788999862 3444778888888854433322 2345668888854 46666668899996 442 222233
Q ss_pred ecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118 207 LDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL 286 (303)
Q Consensus 207 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l 286 (303)
+..+..+..+-. |.+|...+++.|.+||+++++++..+.+. .+..+.|++++.++
T Consensus 105 i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----------------------~vk~V~Ws~~g~~v 159 (443)
T PF04053_consen 105 IKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----------------------AVKYVIWSDDGELV 159 (443)
T ss_dssp ---SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----------------------E-EEEEE-TTSSEE
T ss_pred EcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----------------------CCcEEEEECCCCEE
Confidence 443444555432 77888888889999999999998876542 13568899999999
Q ss_pred EEeecCCeEEEEe
Q 048118 287 FSGYTDGVIRVWG 299 (303)
Q Consensus 287 ~~gs~Dg~v~~w~ 299 (303)
+..+.|. +.+++
T Consensus 160 al~t~~~-i~il~ 171 (443)
T PF04053_consen 160 ALVTKDS-IYILK 171 (443)
T ss_dssp EEE-S-S-EEEEE
T ss_pred EEEeCCe-EEEEE
Confidence 9888664 44443
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.86 E-value=0.0096 Score=56.59 Aligned_cols=112 Identities=15% Similarity=0.258 Sum_probs=69.0
Q ss_pred EEEEcCCCCCCEEEE-----EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe---CCCeEEEEeCCCC
Q 048118 130 CVRFSPNTLQPTIVS-----ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG---KDGVILLWDLAEG 201 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~ 201 (303)
.+.|--++ .++++ ......|++||-+ +.+...-....+--.+++|-|.|..+++-. +|+.|.++.-+.-
T Consensus 200 ~IsWRgDg--~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 200 SISWRGDG--EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred eEEEccCC--cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 36666554 24444 2223789999975 443322222233446799999999887753 4667888875421
Q ss_pred c---eEEEecCCC-eEEEEEEcCCCeEEEE---EcCC-cEEEEeCCCCcee
Q 048118 202 K---RLYSLDAGA-VIHALCFSPNRYWLCA---ATEQ-SIKIWDLESKSIV 244 (303)
Q Consensus 202 ~---~~~~~~~~~-~v~~~~~s~~~~~l~~---~~~~-~i~iwd~~~~~~~ 244 (303)
+ -...++... .+..++|+.++.+|++ ...+ .|++|-+.+..-.
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence 1 111222233 3899999999988876 3344 4999998776443
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.85 E-value=9e-06 Score=71.08 Aligned_cols=203 Identities=15% Similarity=0.187 Sum_probs=120.9
Q ss_pred CEEEEEEeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE----eCCCcEEEEEC
Q 048118 83 DVLSVAFSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA----SWDRTVKVWNL 156 (303)
Q Consensus 83 ~i~~i~~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~dg~i~iwd~ 156 (303)
.+.|+++..+ ...++.|.++|.|-+-..............++..+.++++|++-+. ..++.| -.|..+.|||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt-n~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT-NHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccH-HHHHhhhhhhcccCCccceec
Confidence 4566766554 3578899999999887654322111222234555677889987532 234443 23678999998
Q ss_pred CCc--eeE--EEEcC-CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcC-CCeEEEEEcC
Q 048118 157 SNC--KLR--ATLAG-HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSP-NRYWLCAATE 230 (303)
Q Consensus 157 ~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 230 (303)
.+. .+. ..+.+ -.....+++|-.+.+++++|...+.+.++|++....-........++.+..+| ...+++...+
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~d 216 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSD 216 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecccc
Confidence 764 111 11222 22345578888888899999999999999998432211112233566677777 5678888889
Q ss_pred CcEEEEeC-CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEee-cCCeEEEEecc
Q 048118 231 QSIKIWDL-ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGY-TDGVIRVWGIG 301 (303)
Q Consensus 231 ~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs-~Dg~v~~w~~~ 301 (303)
|.|.+||. ++-+-. +. .+. .... ...-....++|.|... ++++.. +.++|+++|+.
T Consensus 217 g~iAiwD~~rnienp--l~-~i~-----~~~N-------~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENP--LQ-IIL-----RNEN-------KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CceeeccchhhhccH--HH-HHh-----hCCC-------CcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999994 221100 00 000 0000 0111346789999754 555554 46788999874
No 327
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.83 E-value=8.9e-05 Score=40.01 Aligned_cols=38 Identities=58% Similarity=0.880 Sum_probs=32.8
Q ss_pred eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEe
Q 048118 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197 (303)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd 197 (303)
++...+..|...+.++.|++.++.+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556667888999999999989999999999999996
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00021 Score=64.82 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=80.3
Q ss_pred EEEEeeCCCEEEEEe----CCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118 86 SVAFSIDNRQIVSAS----RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161 (303)
Q Consensus 86 ~i~~~~~~~~l~t~~----~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~ 161 (303)
-++|+|...+++.++ ..|+|.||--.+++...+. ..-.+.+++|||.. ..++.|=..|.+.+|...+.+.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt----~P~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT----YPVHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc----cceehhhhccChHH--HHHhhccccceeEEEecCCcee
Confidence 457888877777665 3578888865454322111 11124579999974 4567777789999998877666
Q ss_pred EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC
Q 048118 162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 199 (303)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~ 199 (303)
......|..+|..+.|||+|..++++..=|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 66667799999999999999999999999999999765
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.81 E-value=0.00049 Score=63.01 Aligned_cols=141 Identities=13% Similarity=0.207 Sum_probs=92.2
Q ss_pred CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeC------
Q 048118 28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASR------ 101 (303)
Q Consensus 28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~------ 101 (303)
.+++.+|...|+|-+=|....+ ....+.+|++.|..++ -.|..|+|||.
T Consensus 187 nr~lf~G~t~G~V~LrD~~s~~-----------------------~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~ 241 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLRDPNSFE-----------------------TIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYN 241 (1118)
T ss_pred CcEEEeecccceEEeecCCcCc-----------------------eeeeeeccccceeeee--ccCCeEEEeeccccccc
Confidence 3566666667777766654322 1124567787776544 45778888884
Q ss_pred ---CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE---CCCceeEE-EEcCCCCCeeE
Q 048118 102 ---DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN---LSNCKLRA-TLAGHTGYVNT 174 (303)
Q Consensus 102 ---d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd---~~~~~~~~-~~~~~~~~i~~ 174 (303)
|..|+|||++.......... +.. ..-++|+|.- ...++..+..|...+.| +.+..... .+......+..
T Consensus 242 l~~D~FvkVYDLRmmral~PI~~--~~~-P~flrf~Psl-~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~ 317 (1118)
T KOG1275|consen 242 LAMDPFVKVYDLRMMRALSPIQF--PYG-PQFLRFHPSL-TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA 317 (1118)
T ss_pred ccccchhhhhhhhhhhccCCccc--ccC-chhhhhcccc-cceEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence 66789999864332221111 111 2347788864 34678889999999998 43332222 22223345999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEe
Q 048118 175 VAVSPDGSLCASGGKDGVILLWD 197 (303)
Q Consensus 175 ~~~~~~~~~l~~~~~d~~v~iwd 197 (303)
+.++++++.++.|..+|.|.+|-
T Consensus 318 fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 318 FDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEecCCCceEEEecccCcEeeec
Confidence 99999999999999999999997
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.79 E-value=0.02 Score=49.56 Aligned_cols=231 Identities=11% Similarity=0.161 Sum_probs=116.1
Q ss_pred ceeeeecCCCCCcEEEEecCCCcEEEEEcccCcccc-ce-e------eeeec--CCCcceEEEE--eCCC---C-----c
Q 048118 17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY-GV-A------RRRLT--GHSHFVQDVV--LSSD---G-----Q 76 (303)
Q Consensus 17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~-~~-~------~~~~~--~~~~~i~~~~--~~~~---~-----~ 76 (303)
.|+++++.++..+ |+.|-..|.+-+|+......-. .. . ..++. .....+.++. ..+. + -
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999988765 6778888999999886432110 00 0 00010 1111222210 0011 0 1
Q ss_pred eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeec------CCCCccceEEEEEcC---CCC---CCEEEE
Q 048118 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQE------GDAHTEWVSCVRFSP---NTL---QPTIVS 144 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~------~~~~~~~i~~~~~~~---~~~---~~~~~~ 144 (303)
+....++|.+++.+ +-..++.|..+|.+.|.|.++........ .......+.++.|.. .+. ...+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 23457899999987 44589999999999999997764432211 112344677787763 211 246888
Q ss_pred EeCCCcEEEEECCC---ceeE----EEEcCCCCCeeEEE-ECCC-----------------C---CEEEEEeCCCeEEEE
Q 048118 145 ASWDRTVKVWNLSN---CKLR----ATLAGHTGYVNTVA-VSPD-----------------G---SLCASGGKDGVILLW 196 (303)
Q Consensus 145 ~~~dg~i~iwd~~~---~~~~----~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~d~~v~iw 196 (303)
|+..|.+.+|.+.. +... .....+.++|..+. ++.+ + +-+++...+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999997741 2111 11223445555443 3211 0 223444457789999
Q ss_pred eCCCCceEEEec-CCCeEEEEEEc-----CCC-eEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118 197 DLAEGKRLYSLD-AGAVIHALCFS-----PNR-YWLCAATEQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 197 d~~~~~~~~~~~-~~~~v~~~~~s-----~~~-~~l~~~~~~~i~iwd~~~~~~~~~~~~ 249 (303)
...+.+..+... ....+..+++- ..+ .+++...+|.|++|.+-.=+.+.+++.
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 988777655443 22334444452 233 355667899999999977666665554
No 331
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.77 E-value=0.0041 Score=42.71 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=51.3
Q ss_pred eeEEEECC---CC-CEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118 172 VNTVAVSP---DG-SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL 238 (303)
Q Consensus 172 i~~~~~~~---~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~ 238 (303)
|+++++.. +| +.|++|+.|..|++|+- .+.+..+.....+.+++-...+.+..+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 45555433 33 57999999999999963 46777887788899988888888888888999999975
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.0032 Score=56.52 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=67.6
Q ss_pred CCeEEEEeCCC-----CceEEEecCCCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCCceeeeeeeccccccccccCcc
Q 048118 190 DGVILLWDLAE-----GKRLYSLDAGAVIHALCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATT 262 (303)
Q Consensus 190 d~~v~iwd~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (303)
+++|.+.|.++ .+.+..+..+.....+.++|||.++.++. ++.+.++|+++.+..-.-+++.... ..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~------vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA------VV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce------EE
Confidence 35688888877 45566677777888899999998776654 7899999997754321111110000 00
Q ss_pred ceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 263 ATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 263 ~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
....+ .......+|.++|....|-.-|..|..|++..
T Consensus 369 aevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Eeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 00011 11224567899998888889999999999853
No 333
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.68 E-value=0.017 Score=50.30 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=85.4
Q ss_pred CCEEEEEeCCCcEEEEecC-CceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC
Q 048118 93 NRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171 (303)
Q Consensus 93 ~~~l~t~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 171 (303)
+..++.++.++.+.-+|.. ++..+..... ..+.+ +|--....++.+..++.+..+|.++++....+......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA----GEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC----Cceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 4456667788888888864 3333322211 11111 11001135667788999999999999877665432111
Q ss_pred eeE-EEECC--CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCe--------EEEEEEcC---CCeEEEEEcCCcEEEEe
Q 048118 172 VNT-VAVSP--DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV--------IHALCFSP---NRYWLCAATEQSIKIWD 237 (303)
Q Consensus 172 i~~-~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~s~---~~~~l~~~~~~~i~iwd 237 (303)
... ..-+| .+..++.++.++.+...|..+++.+.......+ ...+.-+| ++.+++.+.++.++.+|
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 000 00112 133566677899999999999887665432110 11111122 56666777889999999
Q ss_pred CCCCceeee
Q 048118 238 LESKSIVED 246 (303)
Q Consensus 238 ~~~~~~~~~ 246 (303)
.++++.+.+
T Consensus 273 ~~tG~~~W~ 281 (394)
T PRK11138 273 LRSGQIVWK 281 (394)
T ss_pred CCCCCEEEe
Confidence 999987654
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.66 E-value=0.02 Score=46.03 Aligned_cols=200 Identities=14% Similarity=0.211 Sum_probs=105.9
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
+.+-.+.+..++++|+...+++.....+.|--.+.. .+ ..+ .+.+. + -+..-.|++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~----vlr----------~i~l~------g-~~D~EgI~y~ 73 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GK----VLR----------RIPLD------G-FGDYEGITYL 73 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------EEE----------EEE-S------S--SSEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CC----EEE----------EEeCC------C-CCCceeEEEE
Confidence 444455689999999877777777777776555432 11 111 11111 1 2355678888
Q ss_pred eCCCEEEEEeCCCcEEEEecCCce---------eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC---
Q 048118 91 IDNRQIVSASRDRTIKLWNTLGEC---------KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN--- 158 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~--- 158 (303)
.++.++++.-.++.+.+++..... .........++..+..++|+|.. ..++.+....-..+|.+..
T Consensus 74 g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 74 GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT-
T ss_pred CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEccccC
Confidence 888777776668888888762211 11111122355668899999975 3455566666666665532
Q ss_pred -ceeE-EEE------cCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEecCC----------CeEEEEEEc
Q 048118 159 -CKLR-ATL------AGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDAG----------AVIHALCFS 219 (303)
Q Consensus 159 -~~~~-~~~------~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~s 219 (303)
.... ... ......+.++.++|.. ++++.+..++.+..+| .+|+.+..+... ...-.++|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence 1111 111 1123457889999954 5667777889999999 566665554321 246678999
Q ss_pred CCCeEEEEEcCCcEEEE
Q 048118 220 PNRYWLCAATEQSIKIW 236 (303)
Q Consensus 220 ~~~~~l~~~~~~~i~iw 236 (303)
++|.+..++.-+..++|
T Consensus 231 ~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TT--EEEEETTTEEEEE
T ss_pred CCCCEEEEcCCceEEEe
Confidence 99988888876665554
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.0083 Score=52.40 Aligned_cols=155 Identities=22% Similarity=0.232 Sum_probs=87.5
Q ss_pred CEEEEEEeeCCCEEEEEe--CC--CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEE--EEEC
Q 048118 83 DVLSVAFSIDNRQIVSAS--RD--RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK--VWNL 156 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~--~d--~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~--iwd~ 156 (303)
.+..-+|+|++..++... .. ..+.++++.......+.....+ -..-+|+|++ ..++++...||... ++|+
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG-~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDG-SKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCC-CEEEEEECCCCCccEEEEcC
Confidence 344556777776544332 11 2366666654333333222222 2345689987 34677777888755 4577
Q ss_pred CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceE-EEecCCCeEEEEEEcCCCeEEEEEc--C
Q 048118 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRL-YSLDAGAVIHALCFSPNRYWLCAAT--E 230 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~--~ 230 (303)
.+....+ +....+.-+.-.|+|+|+.++-.+. .| .|.+.|+..++.- .+....... .-.|+|+|.+++... +
T Consensus 270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~ 347 (425)
T COG0823 270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSG 347 (425)
T ss_pred CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccC
Confidence 6655333 4443444456789999998876654 55 4555565554431 222222222 556899998776654 4
Q ss_pred Cc--EEEEeCCCCce
Q 048118 231 QS--IKIWDLESKSI 243 (303)
Q Consensus 231 ~~--i~iwd~~~~~~ 243 (303)
|. |.+.|+.++..
T Consensus 348 g~~~i~~~~~~~~~~ 362 (425)
T COG0823 348 GQWDIDKNDLASGGK 362 (425)
T ss_pred CceeeEEeccCCCCc
Confidence 55 66777766553
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00024 Score=59.00 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred EEEEECCCceeEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCC-eEE-EE
Q 048118 151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR-YWL-CA 227 (303)
Q Consensus 151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l-~~ 227 (303)
+++.+..+.+...-+..+...|.+++|+|..+ ++..++.+.+|+|.|+++...+.++.....+.+++|.-+. .++ ++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 55555444444444556677899999999776 7888999999999999999888888888899999998775 444 44
Q ss_pred EcCCcEEEEeCCCC
Q 048118 228 ATEQSIKIWDLESK 241 (303)
Q Consensus 228 ~~~~~i~iwd~~~~ 241 (303)
-..|.|.+||++..
T Consensus 255 l~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQP 268 (463)
T ss_pred ccCceEEEEEccCC
Confidence 46899999999754
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00084 Score=59.79 Aligned_cols=113 Identities=20% Similarity=0.290 Sum_probs=77.3
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeecc
Q 048118 175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDL 251 (303)
Q Consensus 175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~ 251 (303)
=+++..+++++.|+.-|.+++++...++....-. ....+..++.|++..++|+++ .|.|.++-+..+..-....+..
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 3455678899999999999999987776543222 234556677888887776665 5678887765522111111100
Q ss_pred ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.-+.|...|+++.|+++++.|.+|..-|.|.+-.++
T Consensus 119 --------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 119 --------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred --------------ccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 001256778999999999999999999999876553
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0013 Score=60.08 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=82.8
Q ss_pred eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118 18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV 97 (303)
Q Consensus 18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~ 97 (303)
+++++|+|.. -.|+.|=..|.+.+|.....+.. .. ...|..+|..+.|+++|..++
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~h------tv-----------------~~th~a~i~~l~wS~~G~~l~ 117 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETH------TV-----------------VETHPAPIQGLDWSHDGTVLM 117 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceee------ee-----------------ccCCCCCceeEEecCCCCeEE
Confidence 3467888763 35666666778888865432211 00 124888999999999999999
Q ss_pred EEeCCCcEEEEecCCceeeeeec--CCCCccc--eEEEEEcCCCCC----CEEEEEeCCCcEE-EEECCCceeEEEEcCC
Q 048118 98 SASRDRTIKLWNTLGECKYTIQE--GDAHTEW--VSCVRFSPNTLQ----PTIVSASWDRTVK-VWNLSNCKLRATLAGH 168 (303)
Q Consensus 98 t~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~--i~~~~~~~~~~~----~~~~~~~~dg~i~-iwd~~~~~~~~~~~~~ 168 (303)
|+.+-|.|.+|...-....+... ...-... ..|...+++... ...+..+.+..+- .++ .+... ..
T Consensus 118 t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fn---wk~~~--a~- 191 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFN---WKESL--AE- 191 (1416)
T ss_pred EcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhccccc---Cccch--hh-
Confidence 99999999999764111111100 0001122 334455555321 1223333333332 221 11110 00
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEeCC
Q 048118 169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLA 199 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~ 199 (303)
.... -.-.|+|..|..++.+|+|+..|-.
T Consensus 192 -rs~~-ksgv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 192 -RSDE-KSGVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred -cccc-ccCCCCCcEEEEEcCCceEEEEcCC
Confidence 0000 0124788888899999999988854
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.51 E-value=0.00024 Score=38.16 Aligned_cols=33 Identities=58% Similarity=0.804 Sum_probs=29.5
Q ss_pred eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 048118 77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 109 (303)
Q Consensus 77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~ 109 (303)
+..|...|.+++|++.+..+++++.|+.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 346778899999999999999999999999996
No 340
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.00031 Score=64.21 Aligned_cols=120 Identities=23% Similarity=0.349 Sum_probs=87.6
Q ss_pred CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC-C-eEEEEeCC
Q 048118 122 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD-G-VILLWDLA 199 (303)
Q Consensus 122 ~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~-~v~iwd~~ 199 (303)
..++...+|++|+-.. ..++.|+..|.|++|+..++.......+|...|+-+.=+-+|..+++.+.. . -..+|++.
T Consensus 1098 rd~~~~fTc~afs~~~--~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGT--NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hccccceeeEEeecCC--ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 3456778999998764 578999999999999999999888899999999999888888876655443 2 46689985
Q ss_pred C-CceEEEecCCCeEEEEEEcCCCeE-EEEEcCCcEEEEeCCCCceeee
Q 048118 200 E-GKRLYSLDAGAVIHALCFSPNRYW-LCAATEQSIKIWDLESKSIVED 246 (303)
Q Consensus 200 ~-~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~ 246 (303)
+ +.+.+++.. -.++.|+..-+. +.++......+||++++..+..
T Consensus 1176 s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1176 STGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 3 444455443 345667765332 2333446789999998876554
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.0063 Score=53.14 Aligned_cols=114 Identities=25% Similarity=0.308 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCCEEEEEeCC--CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE-eCCCe--EEEEeCCCCc
Q 048118 128 VSCVRFSPNTLQPTIVSASWD--RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG-GKDGV--ILLWDLAEGK 202 (303)
Q Consensus 128 i~~~~~~~~~~~~~~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~--v~iwd~~~~~ 202 (303)
+..-+|+|++.....++-... ..+.++|+++++...... ..+.-...+|+|+|+.|+.+ ..||. |.+.|+..++
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 344567776532212222222 358888988776443332 22334456899999987654 45665 4556777666
Q ss_pred eEEEecC-CCeEEEEEEcCCCeEEEEEcCC----cEEEEeCCCCce
Q 048118 203 RLYSLDA-GAVIHALCFSPNRYWLCAATEQ----SIKIWDLESKSI 243 (303)
Q Consensus 203 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~----~i~iwd~~~~~~ 243 (303)
... +.. ...-..-.|+|+|..++..+|. .|+++|.+.+..
T Consensus 274 ~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 274 LPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 332 322 2222256789999877766542 588888877654
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0043 Score=55.50 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=81.2
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~ 161 (303)
..|.--+++..+++++-|+.-|.+.+|+-.+....... .......+..+..+++. .+++.|+..|.|.++.++....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK-NEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhccc-ccCccceEEEEEecchh--HhhhhhcCCceEEeehhhccCC
Confidence 34555567778899999999999999986443222111 11223334555667653 4577788888999998765332
Q ss_pred EE-----E-EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 048118 162 RA-----T-LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 200 (303)
Q Consensus 162 ~~-----~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 200 (303)
.. . -+.|...|++++|++++..+.+|...|+|..-.+..
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 1 133678999999999999999999999999887766
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0017 Score=57.29 Aligned_cols=76 Identities=21% Similarity=0.438 Sum_probs=63.6
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEE-EEEEcCCCeEEEEE-cCCcEEEEeCCCCceeee
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIH-ALCFSPNRYWLCAA-TEQSIKIWDLESKSIVED 246 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~-~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~ 246 (303)
..+.-+.|+|.-.++|.+..+|.+-+..+. -+.+.+++ .+..+. +++|.|||.++|++ .||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 356778999998999999999999988877 78888887 455555 99999999988876 699999999998876654
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.13 E-value=0.028 Score=52.51 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=90.4
Q ss_pred EEEEeCCCcEEEEECCCceeEEEEcCCCCC-eeEEEECC-----CCCEEEEEeCCCeEEEEeCCCC-ceEE-----EecC
Q 048118 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGY-VNTVAVSP-----DGSLCASGGKDGVILLWDLAEG-KRLY-----SLDA 209 (303)
Q Consensus 142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~d~~v~iwd~~~~-~~~~-----~~~~ 209 (303)
+........++-.|+..++.+.++.-+... |..++=.. .......|-.+..+..||.|-. ..+. .+..
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 444455678999999999999998877643 55443210 1234456777889999999843 3222 2233
Q ss_pred CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118 210 GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG 289 (303)
Q Consensus 210 ~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g 289 (303)
.....+++-+.+|.+++++.+|.|++||- .++. ....+.+-+..+..++.+.||++|+..
T Consensus 577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~-------------------AKT~lp~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 577 KNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKR-------------------AKTALPGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred CCCceEEEecCCceEEEEeCCCcEEeecc-cchh-------------------hhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence 45677888888999999999999999993 2211 011223334557789999999998877
Q ss_pred ecCCeEEEEe
Q 048118 290 YTDGVIRVWG 299 (303)
Q Consensus 290 s~Dg~v~~w~ 299 (303)
+.. .+.+++
T Consensus 637 c~t-yLlLi~ 645 (794)
T PF08553_consen 637 CKT-YLLLID 645 (794)
T ss_pred ecc-eEEEEE
Confidence 643 444444
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.97 E-value=0.0015 Score=56.01 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=64.6
Q ss_pred CCCCCEEEEE---------eCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeee
Q 048118 178 SPDGSLCASG---------GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 178 ~~~~~~l~~~---------~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~ 248 (303)
|||+++++.. +..+.+.++|+.+++..........+....|||+|..++...++.|++++..+++.. .+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~-~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQET-QLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEE-ESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeE-Eec
Confidence 5677766553 224578899998865433222245677889999999999999999999998777332 222
Q ss_pred eccccccccccC-ccceee-ccccceeEEEEEEcCCCCEEEEe-ecCCeEEEEec
Q 048118 249 VDLKTEAEKSEA-TTATTT-IKKKNIYCTSLNWSVDGSTLFSG-YTDGVIRVWGI 300 (303)
Q Consensus 249 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~sp~~~~l~~g-s~Dg~v~~w~~ 300 (303)
.+-......... ....-+ +.. -..+.||||+++||.. -.+..|+.+.+
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~----~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDR----RSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSS----SBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred cccceeEEcCccceecccccccc----ccceEECCCCCEEEEEEECCcCCceEEe
Confidence 211000000000 000000 111 1347899999988854 45566666554
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.95 E-value=0.22 Score=43.20 Aligned_cols=210 Identities=15% Similarity=0.177 Sum_probs=102.7
Q ss_pred ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118 11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90 (303)
Q Consensus 11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~ 90 (303)
++...+.|+++..+ +-+++|.|..+|.+.|-|+....-.+. ..+..+ ..-......|+++.|.
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~---~~i~~~------------~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYN---ENIRES------------FLSKSSSSYVTSIEFS 144 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEE---EEGGG--------------T-SS----EEEEEEE
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEee---cccccc------------ccccccccCeeEEEEE
Confidence 34446899999986 467999999999999999842211110 111110 0001122345566665
Q ss_pred -----eCC---CEEEEEeCCCcEEEEecC--Cceeeeee---cCCCCccceEEEE-EcCCC------------------C
Q 048118 91 -----IDN---RQIVSASRDRTIKLWNTL--GECKYTIQ---EGDAHTEWVSCVR-FSPNT------------------L 138 (303)
Q Consensus 91 -----~~~---~~l~t~~~d~~i~vw~~~--~~~~~~~~---~~~~~~~~i~~~~-~~~~~------------------~ 138 (303)
.|+ -.++.|...|.+.+|.+. ....+... ....+...|..+. ++.+. .
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 222 257788888999999753 11122111 1112233333332 32211 0
Q ss_pred CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEEC-----CCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC--
Q 048118 139 QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS-----PDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-- 211 (303)
Q Consensus 139 ~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-- 211 (303)
.+-++....+..+|++..-+.+...+.....-.+..+.+- ..+..|++-..+|.++++.+..-+.+.......
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL 304 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence 1124555668899999987766554443221222333342 245567777899999999999888776654322
Q ss_pred ---eEEEEEEcCCCeEEEEEcCCcEEEEe
Q 048118 212 ---VIHALCFSPNRYWLCAATEQSIKIWD 237 (303)
Q Consensus 212 ---~v~~~~~s~~~~~l~~~~~~~i~iwd 237 (303)
.+...+++++|.++.-.+...+.++.
T Consensus 305 d~~~~~~ssis~~Gdi~~~~gpsE~~l~s 333 (395)
T PF08596_consen 305 DSRRLSSSSISRNGDIFYWTGPSEIQLFS 333 (395)
T ss_dssp -HHHHTT-EE-TTS-EEEE-SSSEEEEEE
T ss_pred ccccccccEECCCCCEEEEeCcccEEEEE
Confidence 23345677888877666655554444
No 347
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.90 E-value=0.0041 Score=35.69 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=30.4
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE
Q 048118 169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 204 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 204 (303)
...|..++|+|...+||.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 357899999999999999999999999998 55544
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.90 E-value=0.2 Score=42.28 Aligned_cols=130 Identities=20% Similarity=0.295 Sum_probs=76.3
Q ss_pred CcEEEEECCCc-----eeEEE-EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc-eEEE--ecCCCeEEEEEEc
Q 048118 149 RTVKVWNLSNC-----KLRAT-LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYS--LDAGAVIHALCFS 219 (303)
Q Consensus 149 g~i~iwd~~~~-----~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~--~~~~~~v~~~~~s 219 (303)
|.|.++++... ++... -....++|++++-- .+. |+++. .+.|.+|++...+ .... +.....+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 88999998773 22211 12236788888755 344 44443 5799999998776 3322 2344566666554
Q ss_pred CCCeEEEEEcCCcEEEEeCCC--CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118 220 PNRYWLCAATEQSIKIWDLES--KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV 297 (303)
Q Consensus 220 ~~~~~l~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~ 297 (303)
.+ .++++.....+.++.++. .++. .+.- .....+++++.|-+++..++.+..+|.+.+
T Consensus 139 ~~-~I~vgD~~~sv~~~~~~~~~~~l~-~va~------------------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 139 KN-YILVGDAMKSVSLLRYDEENNKLI-LVAR------------------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp TT-EEEEEESSSSEEEEEEETTTE-EE-EEEE------------------ESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred cc-EEEEEEcccCEEEEEEEccCCEEE-EEEe------------------cCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 33 445555567777775432 2222 1111 112345677888766679999999999999
Q ss_pred Eecc
Q 048118 298 WGIG 301 (303)
Q Consensus 298 w~~~ 301 (303)
+...
T Consensus 199 l~~~ 202 (321)
T PF03178_consen 199 LRYN 202 (321)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 8764
No 349
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.29 Score=42.45 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=98.1
Q ss_pred EEEEEeeCCCE-EEEEeCCCcEEEEecCCceeee-eecCCCCccceEEEEEcCCCCCCEEEEEe--CCCcEEEEECCCce
Q 048118 85 LSVAFSIDNRQ-IVSASRDRTIKLWNTLGECKYT-IQEGDAHTEWVSCVRFSPNTLQPTIVSAS--WDRTVKVWNLSNCK 160 (303)
Q Consensus 85 ~~i~~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~dg~i~iwd~~~~~ 160 (303)
..+++++.+.. .++...++.|.+.|........ .... .....+.++|++.. ..++-. .++.+.+.|-.+++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG----~~P~~~~~~~~~~~-vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG----LGPVGLAVDPDGKY-VYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec----cCCceEEECCCCCE-EEEEecccCCceEEEEeCCCCe
Confidence 45777887774 4455556889998854322211 1111 13456888887643 333333 47889999988887
Q ss_pred eEEEEcCCCCCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCCceEE-----EecCCCeEEEEEEcCCCeEEEEEc--C--
Q 048118 161 LRATLAGHTGYVNTVAVSPDGSLCASG-GKDGVILLWDLAEGKRLY-----SLDAGAVIHALCFSPNRYWLCAAT--E-- 230 (303)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~--~-- 230 (303)
...+......+ ..++++|+|+.+.++ ..++++.+.|........ .......-..+.++|++..+.+.. .
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 77665443344 889999999966555 478999999976554442 122334445678899987554433 2
Q ss_pred CcEEEEeCCCCceee
Q 048118 231 QSIKIWDLESKSIVE 245 (303)
Q Consensus 231 ~~i~iwd~~~~~~~~ 245 (303)
+.+...|..++....
T Consensus 231 ~~v~~id~~~~~v~~ 245 (381)
T COG3391 231 NNVLKIDTATGNVTA 245 (381)
T ss_pred ceEEEEeCCCceEEE
Confidence 478888887766544
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.71 E-value=0.24 Score=40.69 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=60.7
Q ss_pred CEEEEEeCCCcEEEEECCC-ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE-------------
Q 048118 140 PTIVSASWDRTVKVWNLSN-CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY------------- 205 (303)
Q Consensus 140 ~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~------------- 205 (303)
..++.|+.+| +.+++... ....... +...|..+...|+-+.|++-+ |+++.++++..-....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 4688888888 89998832 2222222 233499999988777665554 5999999986543322
Q ss_pred --EecCCCeEEEEE---EcCCCeEEEEEcCCcEEEEeCCC
Q 048118 206 --SLDAGAVIHALC---FSPNRYWLCAATEQSIKIWDLES 240 (303)
Q Consensus 206 --~~~~~~~v~~~~---~s~~~~~l~~~~~~~i~iwd~~~ 240 (303)
.+.....+..++ -......++++...+|.+|.+..
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~ 123 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND 123 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence 111222344433 12234677777778999988765
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.62 E-value=0.17 Score=42.36 Aligned_cols=99 Identities=21% Similarity=0.364 Sum_probs=68.0
Q ss_pred CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe----------CCCeEEEEeCCCCceEEEecCCC-------
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG----------KDGVILLWDLAEGKRLYSLDAGA------- 211 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~------- 211 (303)
+.+.++|..+++.+..+.. +..-.+.++|+++.+.+++ +.-.|.+||..+-+....+....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4688999988888776654 3445577899999887642 23478899999887766553221
Q ss_pred -eEEEEEEcCCCeEEEEEc---CCcEEEEeCCCCceeeeeee
Q 048118 212 -VIHALCFSPNRYWLCAAT---EQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 212 -~v~~~~~s~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~ 249 (303)
..+.++++.++.++.+.. ..+|.+-|+..++++.++.+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~ 136 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT 136 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC
Confidence 122367788887766543 56899999999998877654
No 352
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.61 E-value=0.0084 Score=34.42 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=26.0
Q ss_pred eEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 273 YCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 273 ~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
.+..++|+|...+||.|+.||.|.+|.++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35679999999999999999999999873
No 353
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.50 E-value=0.48 Score=41.01 Aligned_cols=202 Identities=16% Similarity=0.216 Sum_probs=86.7
Q ss_pred CCEEEEEe-CCCcEEEEecCCceee-----eeecCCCC-------ccceEEEEEcCCCCCCEEEEE--eC----CCcEEE
Q 048118 93 NRQIVSAS-RDRTIKLWNTLGECKY-----TIQEGDAH-------TEWVSCVRFSPNTLQPTIVSA--SW----DRTVKV 153 (303)
Q Consensus 93 ~~~l~t~~-~d~~i~vw~~~~~~~~-----~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~--~~----dg~i~i 153 (303)
.++|+..+ ..+.|.+.|+..++.. .+...+.. ...+.|+ |++ ..++++ .. -|-+.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl---p~G--~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL---PDG--RIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE----SS----EEEEEEEETTS-S--EEEE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec---CCc--cEEEEeccCCCCCCCCcEEE
Confidence 45666555 6778999997533221 11110000 1112333 443 245543 22 245778
Q ss_pred EECCCceeEEEEcCC---CCCeeEEEECCCCCEEEEEeC--------------------CCeEEEEeCCCCceEEEecCC
Q 048118 154 WNLSNCKLRATLAGH---TGYVNTVAVSPDGSLCASGGK--------------------DGVILLWDLAEGKRLYSLDAG 210 (303)
Q Consensus 154 wd~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~--------------------d~~v~iwd~~~~~~~~~~~~~ 210 (303)
.|-++.+........ ...-..+.+.|..+.++|+.- -.++.+||+.+++.+++++.+
T Consensus 162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 888777766655432 233467888888888877632 358999999999999998765
Q ss_pred C---eEEEEEEc--CCCe--EEEEEcCCcEEEEeC-CCCc--eeeeeeeccccccccccCcc--ceeeccccceeEEEEE
Q 048118 211 A---VIHALCFS--PNRY--WLCAATEQSIKIWDL-ESKS--IVEDLKVDLKTEAEKSEATT--ATTTIKKKNIYCTSLN 278 (303)
Q Consensus 211 ~---~v~~~~~s--~~~~--~l~~~~~~~i~iwd~-~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 278 (303)
. ..-.+.|. |+.. ++.++-..+|..|-- +.++ ..+.+.+.... ...... ....+......+++|.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~---v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK---VEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-----SS---GGGGGG-EE------EE
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc---cCcccccccccccccCCCceEeEE
Confidence 2 34455554 4432 333333556665543 3322 11112221110 000000 0011222234578899
Q ss_pred EcCCCCEEE-EeecCCeEEEEeccc
Q 048118 279 WSVDGSTLF-SGYTDGVIRVWGIGR 302 (303)
Q Consensus 279 ~sp~~~~l~-~gs~Dg~v~~w~~~~ 302 (303)
.|.|.++|. ++=-+|.||.|||+.
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EccCCCEEEEEcccCCcEEEEecCC
Confidence 999999776 455699999999963
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.48 E-value=0.54 Score=41.24 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=80.1
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceE-----EEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVS-----CVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
+.|.++.|..+ +.|+....||.+++++..++..+.+.. ......|. ...+..++ ++.-..++.+.+..-
T Consensus 81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~-~i~~~~v~e~~i~~~~~~~~G----ivvLt~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGE-EIEEEKVLECRIFAIWFYKNG----IVVLTGNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhh-hccccCcccccccccccCCCC----EEEECCCCeEEEEeC
Confidence 68899999885 455567799999999987654111111 11111222 22222222 333344444444322
Q ss_pred CCceeE-EEE---cC-----CC-CCeeE-EEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE
Q 048118 157 SNCKLR-ATL---AG-----HT-GYVNT-VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL 225 (303)
Q Consensus 157 ~~~~~~-~~~---~~-----~~-~~i~~-~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 225 (303)
...... ..+ .. +. ..... ..++.+....+....++.+.+.+-...+ .+....++..++.||++.++
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---~i~~~~~i~~iavSpng~~i 231 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---QIDSDGPIIKIAVSPNGKFI 231 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc---cccCCCCeEEEEECCCCCEE
Confidence 111111 111 00 00 01111 2233344444444455555544432211 13334679999999999887
Q ss_pred EEEc-CCcEEEEeCCCCceeeeeee
Q 048118 226 CAAT-EQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 226 ~~~~-~~~i~iwd~~~~~~~~~~~~ 249 (303)
|.-+ +|.+.+....-.+.+.++..
T Consensus 232 Al~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 232 ALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred EEEECCCCEEEEECcccceeEEeec
Confidence 7654 68888887665555544443
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.45 E-value=0.001 Score=58.79 Aligned_cols=164 Identities=15% Similarity=0.266 Sum_probs=96.8
Q ss_pred ccccceeeeecCCCCCcEEEEe----cCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118 13 AHTDMVTAIATPIDNSDMIVTA----SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88 (303)
Q Consensus 13 ~h~~~v~~v~~~~~~~~~~~t~----s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~ 88 (303)
+|....++++|++-+.+.||.| -+|..+.|||+...-. ++. ....++. + -.....+++
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt---vPk----------e~~~fs~-~----~l~gqns~c 161 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT---VPK----------ESPLFSS-S----TLDGQNSVC 161 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccC---CCc----------ccccccc-c----cccCccccc
Confidence 4445677889987655667776 3567899999975310 000 0001111 1 123344788
Q ss_pred EeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE-CCCce-eEEEEc
Q 048118 89 FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN-LSNCK-LRATLA 166 (303)
Q Consensus 89 ~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd-~~~~~-~~~~~~ 166 (303)
|..+.+++++|...+.+.++|+...+... ....+..+..+...|-. ..+++ ...||.|-+|| .++-+ +...+.
T Consensus 162 wlrd~klvlaGm~sr~~~ifdlRqs~~~~---~svnTk~vqG~tVdp~~-~nY~c-s~~dg~iAiwD~~rnienpl~~i~ 236 (783)
T KOG1008|consen 162 WLRDTKLVLAGMTSRSVHIFDLRQSLDSV---SSVNTKYVQGITVDPFS-PNYFC-SNSDGDIAIWDTYRNIENPLQIIL 236 (783)
T ss_pred cccCcchhhcccccchhhhhhhhhhhhhh---hhhhhhhcccceecCCC-CCcee-ccccCceeeccchhhhccHHHHHh
Confidence 99888899999999999999975221110 01122235556666632 23554 45599999999 43322 222222
Q ss_pred CCC----CCeeEEEECCCCC-EEEEEe-CCCeEEEEeCC
Q 048118 167 GHT----GYVNTVAVSPDGS-LCASGG-KDGVILLWDLA 199 (303)
Q Consensus 167 ~~~----~~i~~~~~~~~~~-~l~~~~-~d~~v~iwd~~ 199 (303)
... ..+..++|.|... .+++.+ ..++|+.+|+.
T Consensus 237 ~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 237 RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 222 2488999999543 455555 46799999985
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.44 E-value=0.56 Score=41.10 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=37.4
Q ss_pred cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118 104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160 (303)
Q Consensus 104 ~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 160 (303)
.|++|+..+.....+.... +.+.++.|..+ ..++....||.+++||+....
T Consensus 62 ~I~iys~sG~ll~~i~w~~---~~iv~~~wt~~---e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS---GRIVGMGWTDD---EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECC---CCEEEEEECCC---CeEEEEEcCCEEEEEeCCCce
Confidence 4889988776655544322 56888999875 357778899999999986544
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.37 E-value=0.36 Score=44.34 Aligned_cols=103 Identities=13% Similarity=-0.002 Sum_probs=58.8
Q ss_pred ceEEEEEcCCCCCCEEEEEe-----CCC--cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC---------
Q 048118 127 WVSCVRFSPNTLQPTIVSAS-----WDR--TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD--------- 190 (303)
Q Consensus 127 ~i~~~~~~~~~~~~~~~~~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 190 (303)
.+...+.+|++.. ..+... .|. .|.+++.. +.......+ ...+.-.|+|+|+.+.+.+..
T Consensus 351 ~vsspaiSpdG~~-vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQ-VAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCE-EEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4667888998743 222221 233 45555642 222222232 237788999998877766532
Q ss_pred ---CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEE
Q 048118 191 ---GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKI 235 (303)
Q Consensus 191 ---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i 235 (303)
+.+.+.++..++.-. .....|..+.|||||..++...+++|++
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEE
Confidence 222222333222211 2245699999999998887766787776
No 358
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.36 E-value=0.022 Score=44.30 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=63.8
Q ss_pred CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCC-CCCEEEEEeCCCcEEEEECCCceeEEEEcCCC-C
Q 048118 93 NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT-LQPTIVSASWDRTVKVWNLSNCKLRATLAGHT-G 170 (303)
Q Consensus 93 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~ 170 (303)
+.-++.|+.++.|.+|....... ...........|-+. -|.. ...+..+++++|.||-|.....+.......|+ .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccch-HHHhhhcccccceec--cccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 45688899999999997642110 000000011122221 1222 12367889999999999998887776666676 5
Q ss_pred CeeEEEECCCCCEEEEE--eCCCeEEEEeCCC
Q 048118 171 YVNTVAVSPDGSLCASG--GKDGVILLWDLAE 200 (303)
Q Consensus 171 ~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~ 200 (303)
++.....+..++.++.+ |.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555555556666666 6677777777653
No 359
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.36 E-value=0.034 Score=44.01 Aligned_cols=63 Identities=14% Similarity=0.288 Sum_probs=49.2
Q ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---------------cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118 177 VSPDGSLCASGGKDGVILLWDLAEGKRLYSL---------------DAGAVIHALCFSPNRYWLCAATEQSIKIWDLE 239 (303)
Q Consensus 177 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 239 (303)
+..++.+|++-+.+|.+++||+.+++.+..- .....|..+.++.+|..++.-++|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 3456788999999999999999988754432 12356788888988988888888999999865
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.31 E-value=0.22 Score=39.75 Aligned_cols=102 Identities=15% Similarity=0.265 Sum_probs=71.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCc
Q 048118 182 SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEAT 261 (303)
Q Consensus 182 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 261 (303)
.++..|+..+.+.-.|..+|+.++.-..+.++.+-+.--..+.+.++..|.+++.+.++++.+.+...- +.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------~~- 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------ET- 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh--------hh-
Confidence 467788889999999999998877665555555433333556677788999999999999776554321 00
Q ss_pred cceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118 262 TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303 (303)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~ 303 (303)
. .+ ...-.+++..+..|+.|+..+.-|.-+|
T Consensus 95 -----v-----k~-~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 95 -----V-----KV-RAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred -----h-----cc-ceEEcCCCceEEEecCCCcEEEeccccc
Confidence 0 00 1123578899999999999988877554
No 361
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.27 E-value=0.47 Score=38.32 Aligned_cols=202 Identities=11% Similarity=0.115 Sum_probs=100.3
Q ss_pred ccCCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118 80 HTKDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158 (303)
Q Consensus 80 h~~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~ 158 (303)
-...+-.++|+|+.. ++++....+.|.-.+..+.....+.... ......+.+--++ .++++--.++.+.++++..
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g--~~D~EgI~y~g~~--~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG--FGDYEGITYLGNG--RYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS---SSEEEEEE-STT--EEEEEETTTTEEEEEEE--
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC--CCCceeEEEECCC--EEEEEEcCCCcEEEEEEec
Confidence 345688999999755 6666666777766676554333332211 1224556665443 3444444588888888732
Q ss_pred ce----e--EEEE----c-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC---CceEEEe-----c----CCCeEEE
Q 048118 159 CK----L--RATL----A-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE---GKRLYSL-----D----AGAVIHA 215 (303)
Q Consensus 159 ~~----~--~~~~----~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~-----~----~~~~v~~ 215 (303)
.. . ...+ . .++..+-.++|+|.++.|+++-+..-..++.+.. ...+... . .-..+.+
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 11 1 1112 1 2445688999999888777777776666666643 2222111 1 1234678
Q ss_pred EEEcCC-CeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118 216 LCFSPN-RYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 216 ~~~s~~-~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg 293 (303)
++++|. +.+++.+ ....|..+| ..++.+..+......... ...-...-.++|.++|.+.+++ +-+
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl-----------~~~~~QpEGIa~d~~G~LYIvs-EpN 242 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL-----------SKDIPQPEGIAFDPDGNLYIVS-EPN 242 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG------------SS---SEEEEEE-TT--EEEEE-TTT
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc-----------ccccCCccEEEECCCCCEEEEc-CCc
Confidence 889987 4555555 466788899 567777666554321110 0111123458899998655554 455
Q ss_pred eEEEE
Q 048118 294 VIRVW 298 (303)
Q Consensus 294 ~v~~w 298 (303)
...+|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55444
No 362
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.22 E-value=0.87 Score=41.01 Aligned_cols=154 Identities=11% Similarity=0.136 Sum_probs=84.2
Q ss_pred CEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe---------CCCcEEEEECCCceeEE
Q 048118 94 RQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS---------WDRTVKVWNLSNCKLRA 163 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~dg~i~iwd~~~~~~~~ 163 (303)
..++.++.++.|.-+|..+ +..+...... +...-..+.-+|.-....++.++ .++.+..+|..+++.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~-~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNND-QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCC-CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 5666777888888888743 3333322111 10000011111211112344443 36788999999888766
Q ss_pred EEcCCCC--------------------Ce-eEEEECCCCCEEEEEeCCC------------------eEEEEeCCCCceE
Q 048118 164 TLAGHTG--------------------YV-NTVAVSPDGSLCASGGKDG------------------VILLWDLAEGKRL 204 (303)
Q Consensus 164 ~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~d~------------------~v~iwd~~~~~~~ 204 (303)
.+..... .+ ...++.+.+..++.++.++ .+.-.|..+++.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 5543111 01 1234555566777776554 7999999999988
Q ss_pred EEecCCC-eE------EEEEEc----CCC----eEEEEEcCCcEEEEeCCCCceeeeee
Q 048118 205 YSLDAGA-VI------HALCFS----PNR----YWLCAATEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 205 ~~~~~~~-~v------~~~~~s----~~~----~~l~~~~~~~i~iwd~~~~~~~~~~~ 248 (303)
...+... .. ....+. -++ .+++.+.+|.++..|.++++.+.+..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 8764221 00 000111 122 24445568999999999999886654
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.8 Score=40.45 Aligned_cols=131 Identities=13% Similarity=0.182 Sum_probs=85.0
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCC-------EEEEEeCCCeEEEEeCCC-Cc-eEE-----E
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS-------LCASGGKDGVILLWDLAE-GK-RLY-----S 206 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~v~iwd~~~-~~-~~~-----~ 206 (303)
.+.++.....++-.|+..++.+.++.-+.. |+-+.+.|+.+ .-+.|-.|..|.-||.+- +. .+. .
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455666667788889999999888876655 77777777642 123466788888899873 22 221 1
Q ss_pred ecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118 207 LDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL 286 (303)
Q Consensus 207 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l 286 (303)
+.......|.+-..+|.+++++.+|.|++||- .+..-+ ..+++-+..+..+..+.+|++|
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AK-------------------TAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAK-------------------TALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhh-------------------hcccccCCceeeEEeeccCcEE
Confidence 22334566666677899999999999999995 221111 1122233345667777888887
Q ss_pred EEeecC
Q 048118 287 FSGYTD 292 (303)
Q Consensus 287 ~~gs~D 292 (303)
+..+..
T Consensus 487 l~Tc~t 492 (644)
T KOG2395|consen 487 LATCKT 492 (644)
T ss_pred EEeccc
Confidence 766543
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.01 E-value=0.099 Score=48.97 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeee---cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118 94 RQIVSASRDRTIKLWNTLGECKYTIQ---EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG 170 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 170 (303)
+....|-.++.+..||.+-.....+. ..-.......|++-..++ .++.|+.+|.||+||--.......+.+-..
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG---YIAVGSNKGDIRLYDRLGKRAKTALPGLGD 619 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc---eEEEEeCCCcEEeecccchhhhhcCCCCCC
Confidence 34566778888999997532211111 111223456777776654 799999999999999544334445666678
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118 171 YVNTVAVSPDGSLCASGGKDGVILLWDL 198 (303)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~ 198 (303)
+|..|..+.||++++..+ +..+.+++.
T Consensus 620 pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 999999999999886555 456666664
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.00 E-value=0.02 Score=44.48 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=40.0
Q ss_pred CEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeE-EEECCCCCEEEEEeCCCeEEEEeCCCCceEE
Q 048118 140 PTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNT-VAVSPDGSLCASGGKDGVILLWDLAEGKRLY 205 (303)
Q Consensus 140 ~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~ 205 (303)
..+++|+.+|.|.+|..... .....+......|.+ +.--.++.+..+++.||.|+.|++...+.+.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g 138 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG 138 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceee
Confidence 36889999999999977521 111111111222222 2222234467888999999999998776553
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.95 E-value=0.74 Score=37.79 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=83.9
Q ss_pred eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE------
Q 048118 91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT------ 164 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~------ 164 (303)
..+..|+.|..+| +.+++.......... .+...|..+..-|+- ..++.- .|+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i---~~~~~I~ql~vl~~~--~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI---LKLSSITQLSVLPEL--NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE---eecceEEEEEEeccc--CEEEEE-cCCccEEEEchhhccccccccccc
Confidence 4567888898888 888877211111111 112237777777753 334433 459999999865332220
Q ss_pred --------EcCCCCCeeEEE--ECCCCCEEEEEeCCCeEEEEeCCCC-----ceEEEecCCCeEEEEEEcCCCeEEEEEc
Q 048118 165 --------LAGHTGYVNTVA--VSPDGSLCASGGKDGVILLWDLAEG-----KRLYSLDAGAVIHALCFSPNRYWLCAAT 229 (303)
Q Consensus 165 --------~~~~~~~i~~~~--~~~~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 229 (303)
.......+..++ -.+.+...+.....++|.+|..... +....+.....+.+++|. +..++.+.
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 011123444444 1223333334444568888877542 455666667888899998 44566666
Q ss_pred CCcEEEEeCCCCcee
Q 048118 230 EQSIKIWDLESKSIV 244 (303)
Q Consensus 230 ~~~i~iwd~~~~~~~ 244 (303)
.....+.|+.++...
T Consensus 156 ~~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPS 170 (275)
T ss_pred CCceEEEecCCCCce
Confidence 777888888866543
No 367
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.94 E-value=0.55 Score=42.28 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=68.4
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCCCC------Ce--eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCe
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTG------YV--NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV 212 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~i--~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 212 (303)
.+..++.++.+.-.|..+++.+..+..... .+ ..+.+. ++..++.++.++.|.-+|.++++.+........
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 566677889999999988877655543221 01 011111 225777788899999999999999888765432
Q ss_pred ------EE-EEEEcCCCeEEEEE---------cCCcEEEEeCCCCceeeeeee
Q 048118 213 ------IH-ALCFSPNRYWLCAA---------TEQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 213 ------v~-~~~~s~~~~~l~~~---------~~~~i~iwd~~~~~~~~~~~~ 249 (303)
+. +..+. ++.+++.+ .++.++.+|.++++.+-....
T Consensus 142 ~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 142 VPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 11 11222 24444433 257899999999998776554
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.045 Score=51.71 Aligned_cols=103 Identities=19% Similarity=0.306 Sum_probs=72.1
Q ss_pred eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118 91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG 170 (303)
Q Consensus 91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 170 (303)
..+..++.|+..|.+...|..+.... ....+....+|.+++|+.++ ..++.|-.+|.|.+||...++..+.+..|..
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg--~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDG--SLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCC--ceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 34556788888888888887554222 33334456789999999986 4677788899999999999888888877766
Q ss_pred CeeEEE---ECCCCCEEEEEeCCCeEEEEeC
Q 048118 171 YVNTVA---VSPDGSLCASGGKDGVILLWDL 198 (303)
Q Consensus 171 ~i~~~~---~~~~~~~l~~~~~d~~v~iwd~ 198 (303)
+.+++- +..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 655543 3344446777766665 4554
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.97 Score=37.82 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=56.0
Q ss_pred CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCC--Cc---e--EEEec-CCCeEEEEEEc
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAE--GK---R--LYSLD-AGAVIHALCFS 219 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~--~~---~--~~~~~-~~~~v~~~~~s 219 (303)
|.++.+|. .+.....+..+-..-+.++||||++.|..+- ..+.|.-+++.. +. . ...+. .....-.++..
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD 221 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD 221 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence 33444443 3444444444444567899999998776654 457888887652 11 1 11111 11222234445
Q ss_pred CCCeEE-EEEcCC-cEEEEeCCCCceeeeeeec
Q 048118 220 PNRYWL-CAATEQ-SIKIWDLESKSIVEDLKVD 250 (303)
Q Consensus 220 ~~~~~l-~~~~~~-~i~iwd~~~~~~~~~~~~~ 250 (303)
.+|.+- ++..+| .|.+|+.+ ++++..++++
T Consensus 222 adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred CCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 556544 333333 89999988 8887777654
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.74 E-value=0.69 Score=42.54 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=78.7
Q ss_pred CCEEEEEEeeCCCEEEEEe------CCCcEEEE--ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-------
Q 048118 82 KDVLSVAFSIDNRQIVSAS------RDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS------- 146 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~------~d~~i~vw--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------- 146 (303)
..+...+++|+|+.++..- .|..-.|| +..+.. ..+...+ ....-.|+|++.. +.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~----~~t~PsWspDG~~--lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH----SLTRPSWSLDADA--VWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC----CCCCceECCCCCc--eEEEecCcceEE
Confidence 3566788899998776554 24333444 432222 2221111 1455678887532 22221
Q ss_pred -----CCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEE---EeCCCCc-eE---EEe--cCCCe
Q 048118 147 -----WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL---WDLAEGK-RL---YSL--DAGAV 212 (303)
Q Consensus 147 -----~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i---wd~~~~~-~~---~~~--~~~~~ 212 (303)
..+.+.+.++..+.... ...+.|..+.|||||..++... +++|.+ -....|+ .+ ..+ .....
T Consensus 423 v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 423 VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 12334444554433322 2245799999999999887665 578877 4433443 11 111 12334
Q ss_pred EEEEEEcCCCeEEEEEcCCcEEEEe
Q 048118 213 IHALCFSPNRYWLCAATEQSIKIWD 237 (303)
Q Consensus 213 v~~~~~s~~~~~l~~~~~~~i~iwd 237 (303)
+.++.|.+++.+++...++.-.+|.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~ 523 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWY 523 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEE
Confidence 5788999998877655444333443
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.094 Score=49.73 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=51.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce--EEEecCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeee
Q 048118 180 DGSLCASGGKDGVILLWDLAEGKR--LYSLDAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 180 ~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~ 249 (303)
.+..++.|+..|.+-..|....-. .+......+|.+++|+.+|..++.+ .+|.|.+||...++.++.+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 345678888888888877765322 2233456789999999999877665 689999999999888776553
No 372
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.58 E-value=1.2 Score=37.57 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=83.4
Q ss_pred ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-
Q 048118 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS- 157 (303)
Q Consensus 80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~- 157 (303)
..++|++++-. ++. ++.+. .+.|.+|++.... .......+ ....+.++.... .+++.|+....+.++..+
T Consensus 87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~~----~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVFK----NYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEET----TEEEEEESSSSEEEEEEET
T ss_pred ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec-ceEEEEEEeccc----cEEEEEEcccCEEEEEEEc
Confidence 45778888765 444 44333 4789999875544 22222111 122466666553 378889988888877443
Q ss_pred -CceeEEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC-------Cc----eEEEecCCCeEEEE---EEcCC
Q 048118 158 -NCKLRATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE-------GK----RLYSLDAGAVIHAL---CFSPN 221 (303)
Q Consensus 158 -~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------~~----~~~~~~~~~~v~~~---~~s~~ 221 (303)
..+....-+ .....++++.+-++++.++.+..+|.+.++.... ++ .+..+..+..|.++ ++.|.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~ 238 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPR 238 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeec
Confidence 332222111 1234578888876667889999999999987752 22 23344556777776 54451
Q ss_pred --C-------eEEEEEcCCcEEEE
Q 048118 222 --R-------YWLCAATEQSIKIW 236 (303)
Q Consensus 222 --~-------~~l~~~~~~~i~iw 236 (303)
+ .++.++.+|.|...
T Consensus 239 ~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 239 SGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCCcccccceEEEEecCCEEEEE
Confidence 1 26677778888743
No 373
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.55 E-value=0.98 Score=36.25 Aligned_cols=134 Identities=12% Similarity=0.076 Sum_probs=81.1
Q ss_pred CEEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCe
Q 048118 94 RQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV 172 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 172 (303)
.+++.|+..+.++--|...... +.... ...|.+-+.-- ...++.|+..|-+++.+.+++.....+..-...=
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il----g~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL----GVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh----CceeeeeeEEE---CCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence 4566666666666666533211 11111 11122222111 2358889999999999999986555554322111
Q ss_pred eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeE-EEEEEcC-CCeEEEEEcCCcEE
Q 048118 173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVI-HALCFSP-NRYWLCAATEQSIK 234 (303)
Q Consensus 173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~~~~~~i~ 234 (303)
......+++..+..|+.|++.+..|.++...++..+.+..+ .+-+..| ++.+.++...|.+-
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 22346788999999999999999999998888887654332 2334455 45555555555543
No 374
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.47 E-value=0.93 Score=42.60 Aligned_cols=71 Identities=21% Similarity=0.469 Sum_probs=49.0
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEeCCC----------Cce--E-EEe---------cCCCeEEEEEEcCC----CeE
Q 048118 171 YVNTVAVSPDGSLCASGGKDGVILLWDLAE----------GKR--L-YSL---------DAGAVIHALCFSPN----RYW 224 (303)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~----------~~~--~-~~~---------~~~~~v~~~~~s~~----~~~ 224 (303)
.|..+.++|+|.+++..|..|.+ |..+.. +.. . .++ .....|..+.|+|. ..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 57788999999999988876544 444421 111 1 111 12357889999996 357
Q ss_pred EEEEcCCcEEEEeCCCCc
Q 048118 225 LCAATEQSIKIWDLESKS 242 (303)
Q Consensus 225 l~~~~~~~i~iwd~~~~~ 242 (303)
++..+|+.+++||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 778899999999997543
No 375
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.41 E-value=0.25 Score=45.66 Aligned_cols=135 Identities=8% Similarity=0.106 Sum_probs=80.1
Q ss_pred eeeeecCC-CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe--eCCC
Q 048118 18 VTAIATPI-DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS--IDNR 94 (303)
Q Consensus 18 v~~v~~~~-~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~--~~~~ 94 (303)
|+.+...- .+.+.|+.|..||.|.+|....-............ ..-....+.|...+. -....++++++ ...+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~---~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDND---SGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccc---cccccccCCCCeEee-cCCceeEEEEEecCcce
Confidence 55554332 46789999999999999987532110000000000 000112333443333 23478999998 7788
Q ss_pred EEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCC----CEEEEEeCCCcEEEEEC
Q 048118 95 QIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ----PTIVSASWDRTVKVWNL 156 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~dg~i~iwd~ 156 (303)
++|.++....|.||-... ..+........+...|.+|+|-++... ..+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 899999999999986432 111111111124556889999876521 26778899999988877
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.37 E-value=0.29 Score=42.95 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=57.5
Q ss_pred eEEEECCCCCEEEEE-eCC----CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EEEcC-----------CcEEE
Q 048118 173 NTVAVSPDGSLCASG-GKD----GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CAATE-----------QSIKI 235 (303)
Q Consensus 173 ~~~~~~~~~~~l~~~-~~d----~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-----------~~i~i 235 (303)
....++|+++++|.+ +.. .++++.|+.+++.+...........+.|.+++..+ ....+ ..|+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 457889999988755 333 36999999999766432111122238999996544 33322 23777
Q ss_pred EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC
Q 048118 236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD 292 (303)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D 292 (303)
|.+.+...-..+- ..-.....+...+..++|+++|+..+..
T Consensus 207 ~~~gt~~~~d~lv----------------fe~~~~~~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 207 HKLGTPQSEDELV----------------FEEPDEPFWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp EETTS-GGG-EEE----------------EC-TTCTTSEEEEEE-TTSSEEEEEEES
T ss_pred EECCCChHhCeeE----------------EeecCCCcEEEEEEecCcccEEEEEEEc
Confidence 7775542211110 0011112224567889999987755443
No 377
>PHA02713 hypothetical protein; Provisional
Probab=95.36 E-value=1.4 Score=40.48 Aligned_cols=20 Identities=5% Similarity=0.174 Sum_probs=15.5
Q ss_pred CCCEEEEeecCC--eEEEEecc
Q 048118 282 DGSTLFSGYTDG--VIRVWGIG 301 (303)
Q Consensus 282 ~~~~l~~gs~Dg--~v~~w~~~ 301 (303)
+++..++|+.|| .+..||+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CCEEEEEeeecceeehhhcCcc
Confidence 678888999888 66667653
No 378
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=1.7 Score=37.69 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=79.2
Q ss_pred EEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCCCceEE
Q 048118 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAEGKRLY 205 (303)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~ 205 (303)
..+..++.+. ...+....+..|.+.|..+.+......-.. .-..++++|+++.+.++.. ++++.+.|-.+...+.
T Consensus 77 ~~i~v~~~~~-~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 77 AGVAVNPAGN-KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cceeeCCCCC-eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4566666552 245555557899999977766655443322 4567899999987755544 7899999998888877
Q ss_pred EecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCcee
Q 048118 206 SLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIV 244 (303)
Q Consensus 206 ~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~ 244 (303)
+...+..-..++++|++..+... .++.|.+.|.+...+.
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 76544322788999998755444 4889999997766544
No 379
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.29 E-value=1.5 Score=39.34 Aligned_cols=112 Identities=19% Similarity=0.310 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCC--CCEEEEEeCCCcEEEEECC-----CceeEEEEc-CCCC--Ce--eEEEECCCCCEEEEEeCCCeEE
Q 048118 127 WVSCVRFSPNTL--QPTIVSASWDRTVKVWNLS-----NCKLRATLA-GHTG--YV--NTVAVSPDGSLCASGGKDGVIL 194 (303)
Q Consensus 127 ~i~~~~~~~~~~--~~~~~~~~~dg~i~iwd~~-----~~~~~~~~~-~~~~--~i--~~~~~~~~~~~l~~~~~d~~v~ 194 (303)
.|..+.|.|-.. .+.+++.--..-|-+|.+. ..+....-. ...+ ++ ..+.|+|....|++-.....-.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV 137 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV 137 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence 488999998532 2356667778889999874 222222111 1111 22 3567999888876655544445
Q ss_pred EEeCCCC--ceEEEecCCCeEEEEEEcCCCeEEEEEcCC--cEEEEeC
Q 048118 195 LWDLAEG--KRLYSLDAGAVIHALCFSPNRYWLCAATEQ--SIKIWDL 238 (303)
Q Consensus 195 iwd~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--~i~iwd~ 238 (303)
+.+++.. +....+.....|++.+|.+||+.|+++-+. .-++||-
T Consensus 138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 6666533 223345667899999999999766655443 4567774
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.21 E-value=1.9 Score=37.62 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=29.9
Q ss_pred eccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118 266 TIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 266 ~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
.+.+....+.++..+|.+++.|+..+=|+|.++|+.+
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~ 338 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR 338 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 3344445568899999999999999999999999864
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.01 E-value=2.2 Score=38.46 Aligned_cols=143 Identities=12% Similarity=0.212 Sum_probs=76.6
Q ss_pred ecccCCEEEEEEeeCC----CEEEEEeCCCcEEEEecCC---c-eeeeeec-CC-CCccce--EEEEEcCCCCCCEEEEE
Q 048118 78 VGHTKDVLSVAFSIDN----RQIVSASRDRTIKLWNTLG---E-CKYTIQE-GD-AHTEWV--SCVRFSPNTLQPTIVSA 145 (303)
Q Consensus 78 ~~h~~~i~~i~~~~~~----~~l~t~~~d~~i~vw~~~~---~-~~~~~~~-~~-~~~~~i--~~~~~~~~~~~~~~~~~ 145 (303)
.|+=.-|..++|.|-+ -.+++...-++|.||.+-- + .+....+ -+ ....++ ..+.|||.. ..++.-
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VL 130 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVL 130 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC--ceEEEE
Confidence 3444568899999853 2566677889999998631 1 1111110 00 011111 356799975 344443
Q ss_pred eCCCcEEEEECCC--ceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCceE-----EEecCCCeEEEEE
Q 048118 146 SWDRTVKVWNLSN--CKLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGKRL-----YSLDAGAVIHALC 217 (303)
Q Consensus 146 ~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~-----~~~~~~~~v~~~~ 217 (303)
.....-.+++++. ......++ ..+.|.+.+|.+||+.|+++- ..=.-++||-...... -.|+.+..|.++.
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~ 209 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIE 209 (671)
T ss_pred ecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEE
Confidence 3333334455433 23333343 467899999999999776553 3445678985433210 0123445666654
Q ss_pred EcCCCe
Q 048118 218 FSPNRY 223 (303)
Q Consensus 218 ~s~~~~ 223 (303)
-.-+.+
T Consensus 210 AT~dsq 215 (671)
T PF15390_consen 210 ATVDSQ 215 (671)
T ss_pred Eeccce
Confidence 433333
No 382
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.78 E-value=1.3 Score=40.68 Aligned_cols=69 Identities=12% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcC--CC-eEEEEEcCCcEEEEeC
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSP--NR-YWLCAATEQSIKIWDL 238 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~--~~-~~l~~~~~~~i~iwd~ 238 (303)
...+-+.-+.-++..++-+...++.|||.+.+...+.. .....|.++.|.. ++ .+++++..+.|.+|--
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 44555666666666666666679999999988765543 4467899998854 55 5778899999999864
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.82 Score=40.36 Aligned_cols=111 Identities=17% Similarity=0.235 Sum_probs=68.9
Q ss_pred EEEEEEeeCCC-------EEEEEeCCCcEEEEecCCcee--eeeecCC--CCccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118 84 VLSVAFSIDNR-------QIVSASRDRTIKLWNTLGECK--YTIQEGD--AHTEWVSCVRFSPNTLQPTIVSASWDRTVK 152 (303)
Q Consensus 84 i~~i~~~~~~~-------~l~t~~~d~~i~vw~~~~~~~--~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~ 152 (303)
|+-+.+.|+.+ .-+.|-.|+.|.-||.+-..+ ......+ .......|.+-.-+ .+++.|+.+|-||
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIR 454 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES---GYIVVGSLKGDIR 454 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC---ceEEEeecCCcEE
Confidence 55556665532 224466788888888642222 1111111 11223455554433 4799999999999
Q ss_pred EEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118 153 VWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 198 (303)
Q Consensus 153 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~ 198 (303)
+||--.......+.+-..+|..+..+.+|++++..+ +..+.+-++
T Consensus 455 LYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 455 LYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 999733334455667778999999999999876554 556666665
No 384
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.64 E-value=2.8 Score=36.69 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=41.9
Q ss_pred CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118 139 QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 198 (303)
Q Consensus 139 ~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~ 198 (303)
...+..-+.||.+.+|+-+.......+.. .---..+.+.|....|++++.+..+.-|..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 35677889999999999766554444443 112234677787888999998888888764
No 385
>PHA02713 hypothetical protein; Provisional
Probab=94.50 E-value=3.8 Score=37.67 Aligned_cols=92 Identities=10% Similarity=0.031 Sum_probs=40.7
Q ss_pred cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC------CeEEEEeCCC-CceEE--EecCCCeEEEEEEcC
Q 048118 150 TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD------GVILLWDLAE-GKRLY--SLDAGAVIHALCFSP 220 (303)
Q Consensus 150 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~-~~~~~--~~~~~~~v~~~~~s~ 220 (303)
.+..||..+++....-.-.......-...-+++..+.|+.+ ..+..||..+ .+-.. .+...-....++...
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEEC
Confidence 47788887765432111111111111112245666777654 2456788876 44321 111111111222222
Q ss_pred CCeEEEEEcCC--cEEEEeCCCC
Q 048118 221 NRYWLCAATEQ--SIKIWDLESK 241 (303)
Q Consensus 221 ~~~~l~~~~~~--~i~iwd~~~~ 241 (303)
+..+++++.++ .+..||..+.
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CEEEEEeeecceeehhhcCcccc
Confidence 33444444455 5666776543
No 386
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.36 E-value=0.38 Score=36.57 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.5
Q ss_pred eEEEEEEcCCC------CEEEEeecCCeEEEEec
Q 048118 273 YCTSLNWSVDG------STLFSGYTDGVIRVWGI 300 (303)
Q Consensus 273 ~~~~~~~sp~~------~~l~~gs~Dg~v~~w~~ 300 (303)
.+.+++|||.| .+|++-..+|.|.+|.-
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 67889999943 37999999999999964
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.19 E-value=2.9 Score=34.92 Aligned_cols=149 Identities=13% Similarity=0.187 Sum_probs=77.6
Q ss_pred cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-Cc
Q 048118 81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-NC 159 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-~~ 159 (303)
.+.+..+.-+++|.++++++.-....-|+.-... +.... ......|..+.|.|++ . +......|.|++=+.. ..
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~-r~~~~riq~~gf~~~~--~-lw~~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHN-RNSSRRIQSMGFSPDG--N-LWMLARGGQIQFSDDPDDG 218 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE---SSS-EEEEEE-TTS----EEEEETTTEEEEEE-TTEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEc-cCccceehhceecCCC--C-EEEEeCCcEEEEccCCCCc
Confidence 4568888889999999888776666678753221 22211 2245678999999985 2 3334588888877622 12
Q ss_pred eeEEE-EcC---CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe----cCCCeEEEEEEcCCCeEEEEEcCC
Q 048118 160 KLRAT-LAG---HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL----DAGAVIHALCFSPNRYWLCAATEQ 231 (303)
Q Consensus 160 ~~~~~-~~~---~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~ 231 (303)
+.... +.. ..-.+..+++.++++..++|+. |.+. .....|+.-... ......+.+.|.+..+-++.+.+|
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 11111 111 1123788999998888887764 4443 233444432222 123457778887777778888888
Q ss_pred cEEEE
Q 048118 232 SIKIW 236 (303)
Q Consensus 232 ~i~iw 236 (303)
.|--|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77655
No 388
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.05 E-value=4.7 Score=37.20 Aligned_cols=109 Identities=13% Similarity=0.176 Sum_probs=66.5
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-----C-c-
Q 048118 87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-----N-C- 159 (303)
Q Consensus 87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-----~-~- 159 (303)
+.-+.-++..+.-+....+.|||............ ...+.|..+.|...+....+++.|....|.+|-.. + .
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 33334444444444456789999865432222211 34567899999876555678888899999888542 1 1
Q ss_pred --eeEEE--EcCCC-CCeeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118 160 --KLRAT--LAGHT-GYVNTVAVSPDGSLCASGGKDGVILLWDL 198 (303)
Q Consensus 160 --~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~ 198 (303)
..... +..++ .+|.+..|.++|..++.+ ..++.|+|-
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 12222 33444 578899999988665544 357888764
No 389
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.96 E-value=1.6 Score=31.24 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=66.6
Q ss_pred CCEEEEEeCCCcEEEEECCCce--------eEEEEcCCCCCeeEEEE---CC--CCCEEEEEeCCCeEEEEeCCCCceEE
Q 048118 139 QPTIVSASWDRTVKVWNLSNCK--------LRATLAGHTGYVNTVAV---SP--DGSLCASGGKDGVILLWDLAEGKRLY 205 (303)
Q Consensus 139 ~~~~~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~~~~---~~--~~~~l~~~~~d~~v~iwd~~~~~~~~ 205 (303)
.+.+++++.-|.|.+++..... ....+. -+..|++++- .| +...|+.|+ ...+..||+.....++
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLF 87 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhh
Confidence 4568888888999999765321 122222 3456777754 33 234566665 5678899998776665
Q ss_pred EecCCCeEEEEEEcC----CCeEEEEEcCCcEEEEeCCCCcee
Q 048118 206 SLDAGAVIHALCFSP----NRYWLCAATEQSIKIWDLESKSIV 244 (303)
Q Consensus 206 ~~~~~~~v~~~~~s~----~~~~l~~~~~~~i~iwd~~~~~~~ 244 (303)
.-+...-++++.+-. ...++.++.+.+|.-||.+..+..
T Consensus 88 yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 88 YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 545556677666622 346777777788888887765544
No 390
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.88 E-value=0.43 Score=26.63 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=25.3
Q ss_pred CCeeEEEECCCC---CEEEEEeCCCeEEEEeCCC
Q 048118 170 GYVNTVAVSPDG---SLCASGGKDGVILLWDLAE 200 (303)
Q Consensus 170 ~~i~~~~~~~~~---~~l~~~~~d~~v~iwd~~~ 200 (303)
+.+.+++|+|.. .+|+.+-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357889999844 4888888889999999985
No 391
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.53 E-value=4.1 Score=34.41 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=84.9
Q ss_pred CEEEEEeCCCcEEEEecCC--ceeee-eecCCCCccceE-EEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE--EEEcC
Q 048118 94 RQIVSASRDRTIKLWNTLG--ECKYT-IQEGDAHTEWVS-CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR--ATLAG 167 (303)
Q Consensus 94 ~~l~t~~~d~~i~vw~~~~--~~~~~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~--~~~~~ 167 (303)
..|.+-|.||.+.-..+.. +.... ...++...+++. .-.+...+ ..++--+.+|.|+--|+...... ..+..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~--~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG--GRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT--TEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC--CeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 4677888899888776542 22111 111122222211 11122211 23444678888888887654321 11110
Q ss_pred ----------CCCCeeEEEECCCCCEEEEEe---CCC-------eEEEEeCCCCceEEEecCCCeEEEEEEcCCC-eEE-
Q 048118 168 ----------HTGYVNTVAVSPDGSLCASGG---KDG-------VILLWDLAEGKRLYSLDAGAVIHALCFSPNR-YWL- 225 (303)
Q Consensus 168 ----------~~~~i~~~~~~~~~~~l~~~~---~d~-------~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l- 225 (303)
..+.-.-+++++..+.|.+-- .++ .|-++|+.+++.+..+.....+.+++.+.+. .+|
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEE
Confidence 012334577877554443321 122 5677899999999999877788889998875 344
Q ss_pred EEE-cCCcEEEEeCCCCceeeeee
Q 048118 226 CAA-TEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 226 ~~~-~~~~i~iwd~~~~~~~~~~~ 248 (303)
+.. .++.|.+||..++++++.++
T Consensus 306 ~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 306 ALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEETTTTEEEEEETTT--EEEEE-
T ss_pred EEcCCCCeEEEEeCcCCcEEeehh
Confidence 333 46889999999999887664
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.20 E-value=4.4 Score=33.85 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=59.8
Q ss_pred EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCce
Q 048118 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSI 243 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~ 243 (303)
...-.+.+..+.-+++|+++++++.-....-||--.. =..+.......+.++.|+|++.+...+..|.|++=+... .
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~--~ 217 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD--D 217 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT--E
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCC--C
Confidence 3444567888888999999988876666677875322 123333456789999999998766667888888765111 1
Q ss_pred eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeE
Q 048118 244 VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVI 295 (303)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v 295 (303)
..+... +...+......+.+++|.+++...++|+....+
T Consensus 218 ~~~w~~-------------~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 218 GETWSE-------------PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp EEEE----------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred cccccc-------------ccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 111110 001111122336789999988877777655433
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.12 E-value=4 Score=33.16 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=80.4
Q ss_pred ceEEEEEcCCCCCCEEEEEe--CCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEe-CCCCce
Q 048118 127 WVSCVRFSPNTLQPTIVSAS--WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD-LAEGKR 203 (303)
Q Consensus 127 ~i~~~~~~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd-~~~~~~ 203 (303)
.+...+.++++.. ..+... ....+.++.... .......+ ..++...|++++...+....+...+++. ...++.
T Consensus 25 ~~~s~AvS~dg~~-~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSR-VAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCe-EEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 4667888888643 222222 334455554332 22222222 3677889999988777766666667663 233322
Q ss_pred -EEEec--CC-CeEEEEEEcCCCeEEEEEc----CCcEEEEeCCCCce--eeeeeeccccccccccCccceeecccccee
Q 048118 204 -LYSLD--AG-AVIHALCFSPNRYWLCAAT----EQSIKIWDLESKSI--VEDLKVDLKTEAEKSEATTATTTIKKKNIY 273 (303)
Q Consensus 204 -~~~~~--~~-~~v~~~~~s~~~~~l~~~~----~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (303)
..... .. ..|..+.+||||..++.-. +++|++--+....- ...+. .+..........
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~-------------~~~~~~~~~~~~ 167 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT-------------GPRRVAPPLLSD 167 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec-------------cceEecccccCc
Confidence 11222 12 2899999999997665543 67777765431110 00000 000001111234
Q ss_pred EEEEEEcCCCCEEEEeecCC
Q 048118 274 CTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 274 ~~~~~~sp~~~~l~~gs~Dg 293 (303)
+++++|.+++.+++.+...+
T Consensus 168 v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceeeeecCCCEEEEEeCCCC
Confidence 57899999988766555443
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.98 E-value=4.4 Score=33.20 Aligned_cols=99 Identities=25% Similarity=0.341 Sum_probs=58.0
Q ss_pred EEEEcCCCCCCEEEEEeCCCc-EEEEECCCceeEEEEcCCCCCe--eEEEECCCCCEEEEEeCC-----CeEEEEeCCCC
Q 048118 130 CVRFSPNTLQPTIVSASWDRT-VKVWNLSNCKLRATLAGHTGYV--NTVAVSPDGSLCASGGKD-----GVILLWDLAEG 201 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~ 201 (303)
.+.++|.... .++.+-.-|+ ..++|..+.+...++...++.- --=.|||+|++|...-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~r-avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPR-AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcc-eEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3566665422 3333444443 4567877665444443322211 112589999998765433 78999999754
Q ss_pred -ceEEEecC-CCeEEEEEEcCCCeEEEEEc
Q 048118 202 -KRLYSLDA-GAVIHALCFSPNRYWLCAAT 229 (303)
Q Consensus 202 -~~~~~~~~-~~~v~~~~~s~~~~~l~~~~ 229 (303)
+.+..+.. +--...+.+.+||..+++..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 34444432 33456788889998777654
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.95 E-value=4.5 Score=33.26 Aligned_cols=121 Identities=16% Similarity=0.250 Sum_probs=75.7
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--CeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCce
Q 048118 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSI 243 (303)
Q Consensus 167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~ 243 (303)
+-...+.++.|+|+.+.|.+......-.++=-.+|+.+.+++.. .-.-.+.+..+++++++.. ++.++++.+..+..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 33455999999999998887777776667766778888887543 2233466666777666554 67888887765533
Q ss_pred eeee---eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118 244 VEDL---KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300 (303)
Q Consensus 244 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~ 300 (303)
+... ++.+.... +++...-.++|.|..+.|..+=+-+=+++|.+
T Consensus 163 ~~~~~~~~i~L~~~~-------------k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 163 VISAKVQKIPLGTTN-------------KKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred EEeccceEEeccccC-------------CCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 2222 22222111 11222345788888887777766666666543
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.79 E-value=9.6 Score=36.68 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=88.8
Q ss_pred CEEEEEEeeC-CCEEEEEeC----------CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118 83 DVLSVAFSID-NRQIVSASR----------DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV 151 (303)
Q Consensus 83 ~i~~i~~~~~-~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i 151 (303)
.|.++.|..+ +.+++.|.. .|.|.++...............-.+.+.++.--. ..+ .++-...|
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn----gkl-lA~In~~v 850 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN----GKL-LAGINQSV 850 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC----CeE-EEecCcEE
Confidence 3556667777 566766652 2445555443211111111111122333332221 123 35677899
Q ss_pred EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC--CCceE--EEecCCCeEEEEEEcCCCeEEEE
Q 048118 152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA--EGKRL--YSLDAGAVIHALCFSPNRYWLCA 227 (303)
Q Consensus 152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~--~~~~~--~~~~~~~~v~~~~~s~~~~~l~~ 227 (303)
++|+..+.+..+.-..+..++..+.+.-.|..+++|..=+.+.+.-.+ .++-+ ..--.+.++.++.+-.+..++.+
T Consensus 851 rLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 851 RLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred EEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEee
Confidence 999998776666556677888888888889999999876766665443 32221 11112456777777777777777
Q ss_pred EcCCcEEEEeCC
Q 048118 228 ATEQSIKIWDLE 239 (303)
Q Consensus 228 ~~~~~i~iwd~~ 239 (303)
-.+|.+++-...
T Consensus 931 e~~gNlf~v~~d 942 (1096)
T KOG1897|consen 931 ENSGNLFTVRKD 942 (1096)
T ss_pred cccccEEEEEec
Confidence 778887776543
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.79 E-value=4 Score=38.52 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC--c--eeeeeeeccccccccccCccceeeccccceeEEEEEEcCC---
Q 048118 210 GAVIHALCFSPNRYWLCAATEQSIKIWDLESK--S--IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD--- 282 (303)
Q Consensus 210 ~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--- 282 (303)
...|..+.+||+|.+++......|.|-.+-.. . .....+.. ..+...... ...........+..+.|+|.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~--i~Crt~~v~-~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKE--INCRTVPVD-ERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcc--eeEEEEEec-hhhccCCCCceEEEEEEcCCCCC
Confidence 45789999999999998887777777665321 0 00000000 000000000 00111233456778999997
Q ss_pred CCEEEEeecCCeEEEEecc
Q 048118 283 GSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 283 ~~~l~~gs~Dg~v~~w~~~ 301 (303)
+.+|++=.+|+++|+||+.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CCeEEEEecCCEEEEEecC
Confidence 4788889999999999985
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=2.1 Score=41.59 Aligned_cols=143 Identities=10% Similarity=0.076 Sum_probs=84.2
Q ss_pred CEEEEEEeeCCCE--EEEEeCCCcEEEEecCCceeee------eec---CCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118 83 DVLSVAFSIDNRQ--IVSASRDRTIKLWNTLGECKYT------IQE---GDAHTEWVSCVRFSPNTLQPTIVSASWDRTV 151 (303)
Q Consensus 83 ~i~~i~~~~~~~~--l~t~~~d~~i~vw~~~~~~~~~------~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i 151 (303)
+|..+...+|+.. ++..+++-.|..||+..-+... +.. .........++.|+|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 4555555666543 3334444567788874321111 000 000112245788888653 245667789999
Q ss_pred EEEECCCcee-EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-----CCCeEEEEEEcCCCeEE
Q 048118 152 KVWNLSNCKL-RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-----AGAVIHALCFSPNRYWL 225 (303)
Q Consensus 152 ~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l 225 (303)
++..+..... ...+. -....++++|+|.|+.|+.|-..|++.-|... .+....+. ....|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9887643221 11111 24568999999999999999999999888643 22222221 13578899997776666
Q ss_pred EEE
Q 048118 226 CAA 228 (303)
Q Consensus 226 ~~~ 228 (303)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 543
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.61 E-value=4.3 Score=32.22 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=57.3
Q ss_pred EEEEEcCCCCCCEEEEEeCCCcEEEEE--CCCce-----eEEEEcC---C-CCCeeEEEECCCCCEEEEEeCCCeEEEEe
Q 048118 129 SCVRFSPNTLQPTIVSASWDRTVKVWN--LSNCK-----LRATLAG---H-TGYVNTVAVSPDGSLCASGGKDGVILLWD 197 (303)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~dg~i~iwd--~~~~~-----~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~d~~v~iwd 197 (303)
+.++|+.+... .-..-+.+-+|.-|| ..++. .+..++. . ...--.+++..+|.+.+++-..++|...|
T Consensus 161 Ngl~Wd~d~K~-fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKK-FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcE-EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35667644322 223345556676666 44432 2222221 0 11223456677888888888999999999
Q ss_pred CCCCceEEEecC-CCeEEEEEEcCC
Q 048118 198 LAEGKRLYSLDA-GAVIHALCFSPN 221 (303)
Q Consensus 198 ~~~~~~~~~~~~-~~~v~~~~~s~~ 221 (303)
..+|+.+..+.. ...+.++||--.
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCC
Confidence 999999988754 567899999543
No 400
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=7.6 Score=34.67 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=42.4
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEeC---------CCCceEEE------------ecCCCeEEEEEEcCCC----eEE
Q 048118 171 YVNTVAVSPDGSLCASGGKDGVILLWDL---------AEGKRLYS------------LDAGAVIHALCFSPNR----YWL 225 (303)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~---------~~~~~~~~------------~~~~~~v~~~~~s~~~----~~l 225 (303)
.|..+..++.|..++..+.+|.+.+.=. +.++.... -...-.+.+++|+|+. .++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3667788999999988888997766431 12221111 1112245667777753 455
Q ss_pred EEEcCCcEEEEeCCC
Q 048118 226 CAATEQSIKIWDLES 240 (303)
Q Consensus 226 ~~~~~~~i~iwd~~~ 240 (303)
...+|+.|++||+..
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 566677777777643
No 401
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.36 E-value=0.89 Score=24.87 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCCCEEEEE-eCCCeEEEEeCCCCceEEEecCCCeEEEEEE
Q 048118 179 PDGSLCASG-GKDGVILLWDLAEGKRLYSLDAGAVIHALCF 218 (303)
Q Consensus 179 ~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~ 218 (303)
|+++.|.++ ..+++|.++|..+++.+..+..+.....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 566665554 4588999999988887777655444444444
No 402
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.02 E-value=7.4 Score=33.60 Aligned_cols=140 Identities=16% Similarity=0.180 Sum_probs=67.7
Q ss_pred CEEEEEEeeCCCEEEEEe-----------CCC-cEEEEec-CCcee---eeeecCCCCccceEEEEEcCCCCCCEEEEEe
Q 048118 83 DVLSVAFSIDNRQIVSAS-----------RDR-TIKLWNT-LGECK---YTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS 146 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~-----------~d~-~i~vw~~-~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 146 (303)
....|+|.++|.++++.. ..+ .|.+++. .+... ..+.. + .......+++.+++ ++.+.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~-~l~~p~Gi~~~~~G----lyV~~ 88 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-E-ELSMVTGLAVAVGG----VYVAT 88 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-c-CCCCccceeEecCC----EEEeC
Confidence 445789999998777653 122 5666643 21111 11111 1 11234667777764 33334
Q ss_pred CCCcEEEEECCCc-----e---eEEEEcC----CCCCeeEEEECCCCCEEEEEeCC-------------------CeEEE
Q 048118 147 WDRTVKVWNLSNC-----K---LRATLAG----HTGYVNTVAVSPDGSLCASGGKD-------------------GVILL 195 (303)
Q Consensus 147 ~dg~i~iwd~~~~-----~---~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------~~v~i 195 (303)
.....++.|.... + +...+.. +......+.|.|+|.+.++-+.. |.|.-
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4443344444221 1 1122322 12346789999999865544421 33444
Q ss_pred EeCCCCceEEEecCC-CeEEEEEEcCCCeEEEEEc
Q 048118 196 WDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAAT 229 (303)
Q Consensus 196 wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~ 229 (303)
+|..+++. ..+..+ -....++|+|++.++++..
T Consensus 169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 169 YNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 44433321 111111 1235688999887765543
No 403
>PHA03098 kelch-like protein; Provisional
Probab=91.86 E-value=9.9 Score=34.70 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=30.5
Q ss_pred EEEEEeCC-----CcEEEEECCCceeEEEEcCCCCC-eeEEEECCCCCEEEEEeCC------CeEEEEeCCCCc
Q 048118 141 TIVSASWD-----RTVKVWNLSNCKLRATLAGHTGY-VNTVAVSPDGSLCASGGKD------GVILLWDLAEGK 202 (303)
Q Consensus 141 ~~~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~ 202 (303)
..+.||.+ ..+..||..+++....-.-.... -.+++ .-+++..+.|+.+ ..+..||+.+.+
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 45556654 34777888766543211100111 11112 1245666777632 357788887654
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.58 E-value=2.9 Score=36.53 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=53.3
Q ss_pred EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--CC---eEEEEEEcC--------------CCeEE
Q 048118 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GA---VIHALCFSP--------------NRYWL 225 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~---~v~~~~~s~--------------~~~~l 225 (303)
+......+.++..+|.+++.++...=|+|.++|+.++..++.++. +. .+....-.. ...+|
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 333445688899999999888877779999999999887766642 11 111111000 01333
Q ss_pred EEE--cCCcEEEEeCCCCceeeee
Q 048118 226 CAA--TEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 226 ~~~--~~~~i~iwd~~~~~~~~~~ 247 (303)
+.- --|.|.+|.++++..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEE
Confidence 332 3688999999988765443
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.29 E-value=12 Score=34.54 Aligned_cols=106 Identities=13% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCEEEEEeCC-C-----cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-----cEEEEECCCce
Q 048118 92 DNRQIVSASRD-R-----TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-----TVKVWNLSNCK 160 (303)
Q Consensus 92 ~~~~l~t~~~d-~-----~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-----~i~iwd~~~~~ 160 (303)
++...++||.| + .+-.||...+............... .++.. + ....+.||.|| ++..||..+.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l-~--g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL-D--GKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE-C--CEEEEEeccccccccccEEEecCCCCc
Confidence 45677888888 2 4556666554432221111111111 11111 1 23567788876 47788887665
Q ss_pred eEEEEcCCCCCeeEEEE-CCCCCEEEEEeCCC------eEEEEeCCCCc
Q 048118 161 LRATLAGHTGYVNTVAV-SPDGSLCASGGKDG------VILLWDLAEGK 202 (303)
Q Consensus 161 ~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~------~v~iwd~~~~~ 202 (303)
....-. .......... .-+|+..++|+.++ ++..||..+.+
T Consensus 408 W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 408 WTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred ccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 432111 1112222221 22577778888654 45677776654
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.09 E-value=10 Score=33.28 Aligned_cols=117 Identities=9% Similarity=0.137 Sum_probs=56.2
Q ss_pred EEEEEeeCCCEEEEEeC--------------------CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE-EE
Q 048118 85 LSVAFSIDNRQIVSASR--------------------DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT-IV 143 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~--------------------d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~ 143 (303)
+..-|.|....++|... .+++.+||+......+.............++|..+..... ++
T Consensus 184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv 263 (461)
T PF05694_consen 184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV 263 (461)
T ss_dssp --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence 45666777777777653 3689999997655443332222222345677776554332 34
Q ss_pred EEeCCCcEEEE-ECCCcee----EEEEcC-----C------------CCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q 048118 144 SASWDRTVKVW-NLSNCKL----RATLAG-----H------------TGYVNTVAVSPDGSLCASGG-KDGVILLWDLAE 200 (303)
Q Consensus 144 ~~~~dg~i~iw-d~~~~~~----~~~~~~-----~------------~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~ 200 (303)
.+.-.++|..| .-.+++. +.++.. - ..-|+.+.+|.|.++|..+. ..|.++-||+..
T Consensus 264 g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 264 GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 33444455444 3233332 111111 1 13478999999999886554 699999999975
Q ss_pred C
Q 048118 201 G 201 (303)
Q Consensus 201 ~ 201 (303)
.
T Consensus 344 P 344 (461)
T PF05694_consen 344 P 344 (461)
T ss_dssp T
T ss_pred C
Confidence 3
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.07 E-value=7.6 Score=31.87 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=77.5
Q ss_pred EEeeCCCEEEEEeCC-----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe----------------
Q 048118 88 AFSIDNRQIVSASRD-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS---------------- 146 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------- 146 (303)
.|+|+|.+|...-+| |.|=|||...... .+-....|--....+.+.+++. .++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fq-rvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ-RVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccc-eecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccch
Confidence 489999998876554 6788998752211 1111122222234566666652 222211
Q ss_pred --CCCcEEEEECCCceeEEE--Ec--CCCCCeeEEEECCCCCEEEEEeCCCe-----EEEEeCCCCceEEEecC------
Q 048118 147 --WDRTVKVWNLSNCKLRAT--LA--GHTGYVNTVAVSPDGSLCASGGKDGV-----ILLWDLAEGKRLYSLDA------ 209 (303)
Q Consensus 147 --~dg~i~iwd~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~d~~-----v~iwd~~~~~~~~~~~~------ 209 (303)
.+-++.+.|..++.++.+ +. -+.-.|.-++..++|..++-+-..|. --+=-...++++..++.
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~ 276 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA 276 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence 111233334334433222 11 22345666667676665544322221 00111122333333221
Q ss_pred --CCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCCceeeee
Q 048118 210 --GAVIHALCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 210 --~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~ 247 (303)
...+-+++.+.+..+++.++ .+...+||..++.++.+-
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 23566778776555554443 567889999999887653
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.87 E-value=15 Score=35.08 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=68.6
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCCCCC--------eeEEEEC----------------CCCCEEEEEeCCCeEEEE
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGY--------VNTVAVS----------------PDGSLCASGGKDGVILLW 196 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~~~~~----------------~~~~~l~~~~~d~~v~iw 196 (303)
.+..++.++.|.-.|.++++.+.++...... +..+.+- ..+..++.++.|+++.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5666777888888898888876665432110 1222221 123477788899999999
Q ss_pred eCCCCceEEEecCCCeEE-------------EEEEcC---CCeEEEEEc----------CCcEEEEeCCCCceeeeee
Q 048118 197 DLAEGKRLYSLDAGAVIH-------------ALCFSP---NRYWLCAAT----------EQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 197 d~~~~~~~~~~~~~~~v~-------------~~~~s~---~~~~l~~~~----------~~~i~iwd~~~~~~~~~~~ 248 (303)
|.++|+.+..+.....+. ...-.| ++.+++.+. .|.|+-+|.++++++-...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999999887664322221 011112 345554432 5789999999999987654
No 409
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.31 E-value=12 Score=32.97 Aligned_cols=151 Identities=15% Similarity=0.218 Sum_probs=61.4
Q ss_pred EEEEeCCCcEEEEECCC-------ceeEEEE-cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce-EEE------
Q 048118 142 IVSASWDRTVKVWNLSN-------CKLRATL-AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR-LYS------ 206 (303)
Q Consensus 142 ~~~~~~dg~i~iwd~~~-------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~------ 206 (303)
.+....|..+.+|+... ......+ .++...+.+ .+++....|.|+.|+--+... +.+
T Consensus 39 ~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~--------v~lv~p~~G~v~f~~~I~~~l~~~t~~~i~l 110 (422)
T PF08801_consen 39 RAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPG--------VGLVKPKTGRVVFWESISHLLVLATPSQISL 110 (422)
T ss_dssp EEEEEETTEEEEEE--SS--GG--EEEEE-----------S--------EEEEE-TT-EEEEES-TT-TT--EEEE----
T ss_pred EEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCce--------EEEEEcCCCCEEecccchhhhhcCccccccc
Confidence 35556788999999742 2211122 222222222 344556688888887432211 111
Q ss_pred -------ecCCC-eEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccc-cc-----cccCccceee-ccccc
Q 048118 207 -------LDAGA-VIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTE-AE-----KSEATTATTT-IKKKN 271 (303)
Q Consensus 207 -------~~~~~-~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~-~~~~~ 271 (303)
+..+. .+......+.+ ++++.+.|+|.+.-.+...-+.++....... .. .......... .....
T Consensus 111 ~gv~~~~l~~~e~~~~~~~~~~~~-~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~~~~ 189 (422)
T PF08801_consen 111 LGVSYSELLSGELSTSLTNVEPSG-FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSFSDPR 189 (422)
T ss_dssp --------------EEEEEEETTT-EEEEETT--EEEEEE-TTS-EEEEE-TT---------------------------
T ss_pred cccceeeecCCceEEECCCCceEE-EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCcccch
Confidence 11111 12222333444 5566667777777665532333332211111 00 0000000000 01112
Q ss_pred eeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 272 IYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 272 ~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
..+..+...+..+.|.+-..+|.|.+|+++
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 336778888888999999999999999985
No 410
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.90 E-value=14 Score=32.93 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=36.1
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce--EEEec------CCCeEEEEEEcCCC
Q 048118 169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR--LYSLD------AGAVIHALCFSPNR 222 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~------~~~~v~~~~~s~~~ 222 (303)
-..-+.|+|.|++++|++--..|+|++++..++.. +..+. ...-...++++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45668899999998777665569999998654432 21111 13446778998874
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=89.82 E-value=12 Score=31.97 Aligned_cols=149 Identities=12% Similarity=0.113 Sum_probs=81.6
Q ss_pred cCCEEEEEEeeCCCEEEEEeCCCcEE-EEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118 81 TKDVLSVAFSIDNRQIVSASRDRTIK-LWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC 159 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~~d~~i~-vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~ 159 (303)
.+.+..+.+.+++.+++++.. |.+. .++..+. .+.... ......+.++.+.+++ ..+ ..+..|.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~-tW~~~~-~~~~~~l~~i~~~~~g--~~~-~vg~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQT-AWTPHQ-RNSSRRLQSMGFQPDG--NLW-MLARGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCC-eEEEee-CCCcccceeeeEcCCC--CEE-EEecCCEEEEccCCCC
Confidence 346788889898877765544 4433 2332222 222221 2234567888888865 233 3456677654223333
Q ss_pred eeEEEEcC----CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeEEEEEEcCCCeEEEEEcCC
Q 048118 160 KLRATLAG----HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVIHALCFSPNRYWLCAATEQ 231 (303)
Q Consensus 160 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~ 231 (303)
..-..... ....+.++.+.|+++.++++ .+|.+.. ....++.-.... .....+.+.|..++..++++..|
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 32221111 12347788899877765544 5676543 333343322221 12356777777777778888888
Q ss_pred cEEEEe
Q 048118 232 SIKIWD 237 (303)
Q Consensus 232 ~i~iwd 237 (303)
.|-.|+
T Consensus 324 ~il~~~ 329 (334)
T PRK13684 324 VLLRYV 329 (334)
T ss_pred eEEEec
Confidence 887775
No 412
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.58 E-value=16 Score=33.33 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=67.0
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCCC-CCee----------EEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGHT-GYVN----------TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 209 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~----------~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 209 (303)
.++.++.++.|.-.|..+++.+.++.... ..+. .+++ .+..++.++.|+.+.-.|.++|+.+.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 56667778889999998888776554211 1111 1122 134567788899999999999998877643
Q ss_pred CCeE--EEEEEcC---CCeEEEEEc------CCcEEEEeCCCCceeeeeee
Q 048118 210 GAVI--HALCFSP---NRYWLCAAT------EQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 210 ~~~v--~~~~~s~---~~~~l~~~~------~~~i~iwd~~~~~~~~~~~~ 249 (303)
...- ..+.-+| ++.+++... +|.|..+|.++++++-....
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 2110 0111112 445554432 57899999999998866543
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.43 E-value=10 Score=30.81 Aligned_cols=111 Identities=21% Similarity=0.250 Sum_probs=60.8
Q ss_pred CeeEEEECCCCCEEEEEe---CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEe-CCCCceee
Q 048118 171 YVNTVAVSPDGSLCASGG---KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWD-LESKSIVE 245 (303)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd-~~~~~~~~ 245 (303)
.+.+.+++++++.++... ....+.++.. +...........+..-+|++++.+.++ ..+....++. ...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~- 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE- 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence 678899999998776555 3345555543 333333323446667788888754444 3344445553 2222211
Q ss_pred eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee---cCCeEEEEec
Q 048118 246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY---TDGVIRVWGI 300 (303)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs---~Dg~v~~w~~ 300 (303)
...++.. ... . .+.++.+||||..++.-. .++.|.+=.+
T Consensus 102 ~~~v~~~-------------~~~--~-~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 PVEVDWP-------------GLR--G-RITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred eEEeccc-------------ccC--C-ceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 1111100 000 0 568899999998766554 3566665444
No 414
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.40 E-value=10 Score=30.83 Aligned_cols=192 Identities=11% Similarity=0.076 Sum_probs=105.2
Q ss_pred EEEEEeeCCCEEEEEeCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-CCcEEEEECCCcee
Q 048118 85 LSVAFSIDNRQIVSASRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-DRTVKVWNLSNCKL 161 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-dg~i~iwd~~~~~~ 161 (303)
..+.|..++.++-+.+.-| .|+.+|+.+.........+. ...-..+....+ .+.--.+ ++...+||..+.+.
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d----~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGD----KLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETT----EEEEEESSSSEEEEEETTTTEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECC----EEEEEEecCCeEEEEccccceE
Confidence 3577777888888888766 67788876533222211111 111123333322 2333333 57888999998888
Q ss_pred EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---C---CeEEEEEEcCCCeEEEEE-cCCcEE
Q 048118 162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---G---AVIHALCFSPNRYWLCAA-TEQSIK 234 (303)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~---~~v~~~~~s~~~~~l~~~-~~~~i~ 234 (303)
..++.- .+.=+.++ .+++.|+.+....++..+|..+.+...++.. + ..++-+.|- +|.+.|-. ....|.
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 777754 34556676 4566666666677999999888776665532 2 235556665 56655554 467899
Q ss_pred EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118 235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY 290 (303)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs 290 (303)
..|..+|++...+.+............ ........+.|+|.|....|.+.+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~-----~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKS-----RQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTS-----T--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhccccccc-----ccccCCeeEeEeEeCCCCEEEEEe
Confidence 999999999887764321111000000 000123347899988876544433
No 415
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.14 E-value=2.7 Score=38.50 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=41.8
Q ss_pred CEEEEEeCCCcEEEEECCC----ce-eEEEE-cC--------------------CCCCeeEEEECC----CCCEEEEEeC
Q 048118 140 PTIVSASWDRTVKVWNLSN----CK-LRATL-AG--------------------HTGYVNTVAVSP----DGSLCASGGK 189 (303)
Q Consensus 140 ~~~~~~~~dg~i~iwd~~~----~~-~~~~~-~~--------------------~~~~i~~~~~~~----~~~~l~~~~~ 189 (303)
..++.+..||.+...+... +. ..... .. .......+++++ +..++++-+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 3577778898888776643 11 11111 10 012345566666 6678999999
Q ss_pred CCeEEEEeCCCCceEEEe
Q 048118 190 DGVILLWDLAEGKRLYSL 207 (303)
Q Consensus 190 d~~v~iwd~~~~~~~~~~ 207 (303)
|+++|+||+.+++++.+.
T Consensus 239 D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 239 DHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TSEEEEEETTTTCEEEEE
T ss_pred CCeEEEEECCCCeEEEEe
Confidence 999999999999986654
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.08 E-value=1.6 Score=24.37 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=23.3
Q ss_pred EEEEEEcCCC---CEEEEeecCCeEEEEecc
Q 048118 274 CTSLNWSVDG---STLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 274 ~~~~~~sp~~---~~l~~gs~Dg~v~~w~~~ 301 (303)
+.++.|||.. .+|+-+-.-|.|+++|+-
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4568899854 489999999999999984
No 417
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.07 E-value=12 Score=32.34 Aligned_cols=106 Identities=11% Similarity=0.126 Sum_probs=62.4
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCC--CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC--eEEEE
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGH--TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA--VIHAL 216 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~~ 216 (303)
.+..+..+|.|.-.|..+++.+.....- ...+..-.+..+|+ +..++.++.+...|.++++.+....... .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 4556677887877887777644322111 11222222223565 6678888899999998899888776555 12222
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 217 ~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~ 247 (303)
..-.++..+..+.++.++..|..+++.+...
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence 2222444444445677777777777665443
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=9.2 Score=37.49 Aligned_cols=93 Identities=13% Similarity=0.030 Sum_probs=56.4
Q ss_pred eCCCcEEEEECCCceeEE-----EEcCC------CCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCC-ceEEEecCCCe
Q 048118 146 SWDRTVKVWNLSNCKLRA-----TLAGH------TGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEG-KRLYSLDAGAV 212 (303)
Q Consensus 146 ~~dg~i~iwd~~~~~~~~-----~~~~~------~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~ 212 (303)
+.+..|..||++...... -+..| .....++.|+|.-. ..++...|+.|++.-+... +.+..+.....
T Consensus 121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~ 200 (1405)
T KOG3630|consen 121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNS 200 (1405)
T ss_pred cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccc
Confidence 344568889986532111 11111 12345677888543 3466778888888766432 22334455677
Q ss_pred EEEEEEcCCCeEEEEE-cCCcEEEEeC
Q 048118 213 IHALCFSPNRYWLCAA-TEQSIKIWDL 238 (303)
Q Consensus 213 v~~~~~s~~~~~l~~~-~~~~i~iwd~ 238 (303)
..+++|+|.|.-++++ ..|.+.-|..
T Consensus 201 ~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred eeeEEeccccceeeEecCCCeEEEeec
Confidence 8999999998666555 5677777654
No 419
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.80 E-value=12 Score=30.58 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=72.2
Q ss_pred cceEEEEEcCCCCCCEEEEEeCCC--cEEEEECCCceeEEEEcCCCC-CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Q 048118 126 EWVSCVRFSPNTLQPTIVSASWDR--TVKVWNLSNCKLRATLAGHTG-YVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 202 (303)
Q Consensus 126 ~~i~~~~~~~~~~~~~~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~ 202 (303)
.....+.|..++ ..+-+.+.-| .|+.+|+.+++......-... ---.+.... ++.....-.+++..+||..+-+
T Consensus 45 aFTQGL~~~~~g--~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDG--TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETT--EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCC--EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccce
Confidence 345677774443 2444555544 699999999886654432211 112343332 3444556678999999999988
Q ss_pred eEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeec
Q 048118 203 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVD 250 (303)
Q Consensus 203 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~ 250 (303)
.+.++.....=..++. .+..++.+....+|+++|.++.+..+.+.+.
T Consensus 122 ~~~~~~y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEEE-SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred EEEEEecCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 8888866555556663 2345555555678999999888887777654
No 420
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.77 E-value=6.7 Score=31.11 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=44.8
Q ss_pred CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118 210 GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG 289 (303)
Q Consensus 210 ~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g 289 (303)
+.++..+... +..+++...+|.+++||+++++.+-.- +.+.+-..... .. . ......+..+..+.+|.-|++=
T Consensus 12 gs~~~~l~~~-~~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~-~~-~---~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 12 GSPVSFLECN-GSYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSP-VS-D---KSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred CCceEEEEeC-CCEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccc-cc-c---CCCCCcEEEEEEcCCCCEEEEE
Confidence 4444444432 456778889999999999988765322 11111000000 00 0 0223345666677777655543
Q ss_pred ecCCeEEEEec
Q 048118 290 YTDGVIRVWGI 300 (303)
Q Consensus 290 s~Dg~v~~w~~ 300 (303)
.+|..+.|+.
T Consensus 85 -sng~~y~y~~ 94 (219)
T PF07569_consen 85 -SNGDSYSYSP 94 (219)
T ss_pred -eCCCEEEecc
Confidence 4577788865
No 421
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.97 E-value=16 Score=31.30 Aligned_cols=145 Identities=20% Similarity=0.250 Sum_probs=70.6
Q ss_pred ccceEEEEEcCCCCCCEEEEEeCCC---cEEEEECCCceeEEEEcC----CCCCeeEEEEC-CCCCEE-EEEeCCC--eE
Q 048118 125 TEWVSCVRFSPNTLQPTIVSASWDR---TVKVWNLSNCKLRATLAG----HTGYVNTVAVS-PDGSLC-ASGGKDG--VI 193 (303)
Q Consensus 125 ~~~i~~~~~~~~~~~~~~~~~~~dg---~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~-~~~~~l-~~~~~d~--~v 193 (303)
...+..+.|.+++....+....++. .+.++|..++.....+.. .-..-....+. +++..+ .....|| .|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 4567888898876322333344443 356677766544322221 11223355554 666544 4444666 45
Q ss_pred EEEeCCCCceEEEecC-CCeE-EEEEEcCCCeEEE-EEc-----CCcEEEEeCCCCceeeeeeeccccccccccCcccee
Q 048118 194 LLWDLAEGKRLYSLDA-GAVI-HALCFSPNRYWLC-AAT-----EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATT 265 (303)
Q Consensus 194 ~iwd~~~~~~~~~~~~-~~~v-~~~~~s~~~~~l~-~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (303)
.+.+...+.. ..+.. .-.| ..+.+++++..+. .+. ...|+.-+++.+..+..+....
T Consensus 263 y~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-------------- 327 (353)
T PF00930_consen 263 YLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-------------- 327 (353)
T ss_dssp EEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS--------------
T ss_pred EEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC--------------
Confidence 5556655543 34433 3345 3467788764443 332 1245555555122222222110
Q ss_pred eccccceeEEEEEEcCCCCEEEEee
Q 048118 266 TIKKKNIYCTSLNWSVDGSTLFSGY 290 (303)
Q Consensus 266 ~~~~~~~~~~~~~~sp~~~~l~~gs 290 (303)
..+ ..+.|||++++++..+
T Consensus 328 --~~~----~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 328 --GDH----YSASFSPDGKYYVDTY 346 (353)
T ss_dssp --STT----EEEEE-TTSSEEEEEE
T ss_pred --CCc----eEEEECCCCCEEEEEE
Confidence 011 4678999999877443
No 422
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=19 Score=35.94 Aligned_cols=159 Identities=13% Similarity=0.170 Sum_probs=82.4
Q ss_pred EEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEE--------CCCCCEEEEEeCCCeEEEEeCCC----Cc-e----EE
Q 048118 143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV--------SPDGSLCASGGKDGVILLWDLAE----GK-R----LY 205 (303)
Q Consensus 143 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~d~~v~iwd~~~----~~-~----~~ 205 (303)
+-.+.|..+.+|+.+++.-...+.+-...|..+.. .|.=++|++-+.--.|.++-+.. +. . ..
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 44567899999999875544555554444544432 23334544444444455554321 11 1 12
Q ss_pred EecC-CCeEEEEEEcCCCeEEEEEcCCcEEE--EeCCCCceee-eeeeccccccccccCccceeecc-ccceeEEEEEEc
Q 048118 206 SLDA-GAVIHALCFSPNRYWLCAATEQSIKI--WDLESKSIVE-DLKVDLKTEAEKSEATTATTTIK-KKNIYCTSLNWS 280 (303)
Q Consensus 206 ~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~i--wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s 280 (303)
++.. +..|+++....+|.++.++.||.|+= |....+=.-+ .-++.+.......-.++ ...+. .+...+..+...
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEec
Confidence 2222 56788888888899998888885432 2222110000 00111100000000000 11111 223345666666
Q ss_pred CCCCEEEEeecCCeEEEEeccc
Q 048118 281 VDGSTLFSGYTDGVIRVWGIGR 302 (303)
Q Consensus 281 p~~~~l~~gs~Dg~v~~w~~~~ 302 (303)
.....+.+=+..|+|.+|+++.
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 6667888999999999999853
No 423
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.75 E-value=0.066 Score=46.44 Aligned_cols=140 Identities=11% Similarity=0.152 Sum_probs=86.4
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 163 (303)
.....|-+.+.-++.++.+..+..||..+.-.... ..+.....++|..++.. .++.+-..+.+.+||+++....+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~----n~tg~aldm~wDkegdv-lavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL----NPTGKALDMAWDKEGDV-LAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceeccc----CCchhHhhhhhccccch-hhhhhhcCCCeeechhhhhhHHH
Confidence 34556778777788888888899998644321111 11222334566665432 44556678899999997543211
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEE
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAA 228 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 228 (303)
.-.+....-.-+.|++....++.+...|.+.+++-...+.+.... ..-.+.+.++.+.++.+..+
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 111111111226788888888888889999999987655443332 44567788888877665444
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.02 E-value=8.6 Score=33.75 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=62.6
Q ss_pred ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeee--ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118 80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTI--QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS 157 (303)
Q Consensus 80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~ 157 (303)
-+++|.+|.|++|.+.+|.--.|++|.+++..++..... +..+..+..|....|..+. .++-.... -+.+|...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~---e~A~i~~~-G~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST---EIAFITDQ-GIEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe---eEEEEecC-CeEEEEEc
Confidence 356899999999999999999999999998754432211 1223345568888888763 23333333 34455443
Q ss_pred Cce-eEEEEcCCCCCeeEEEECCCCCEE
Q 048118 158 NCK-LRATLAGHTGYVNTVAVSPDGSLC 184 (303)
Q Consensus 158 ~~~-~~~~~~~~~~~i~~~~~~~~~~~l 184 (303)
..+ ..+..+.|+-.|.=..|.++.+.+
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceE
Confidence 322 223344566666666777766643
No 425
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.49 E-value=19 Score=30.60 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=32.3
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---EEEec-----CCCeEEEEEEcCC
Q 048118 171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---LYSLD-----AGAVIHALCFSPN 221 (303)
Q Consensus 171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~-----~~~~v~~~~~s~~ 221 (303)
.-+.|+|.|+|++|++ ...|+|++++ ..+.. +.... .......++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 3478999999988765 5699999999 33332 32221 2345788999995
No 426
>PRK10115 protease 2; Provisional
Probab=86.28 E-value=31 Score=32.76 Aligned_cols=108 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred eeEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC-------CcEEEEeCC
Q 048118 172 VNTVAVSPDGSLCASGGKDG-----VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE-------QSIKIWDLE 239 (303)
Q Consensus 172 i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~~i~iwd~~ 239 (303)
+..+.++|++++|+.+...+ ++++.|+.++..+........ ..++|++++..+..+.. ..|+.+++.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Q ss_pred CC--ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC---eEEEEe
Q 048118 240 SK--SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG---VIRVWG 299 (303)
Q Consensus 240 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg---~v~~w~ 299 (303)
++ +....+. ............+.++++++..+..+ .+.+++
T Consensus 208 t~~~~d~lv~~-------------------e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 208 TPASQDELVYE-------------------EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred CChhHCeEEEe-------------------eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
No 427
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.93 E-value=24 Score=31.11 Aligned_cols=58 Identities=10% Similarity=0.198 Sum_probs=42.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc-----eEEEecCCCeEEEEEEcC-----CCeEEEEEcCCcEEEEeC
Q 048118 181 GSLCASGGKDGVILLWDLAEGK-----RLYSLDAGAVIHALCFSP-----NRYWLCAATEQSIKIWDL 238 (303)
Q Consensus 181 ~~~l~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~~~i~iwd~ 238 (303)
...+++||..|.++|++...+. .+...+...+|-++..-. +...||+-.-.++.+|.+
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v 104 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSV 104 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEE
Confidence 3588999999999999985433 344445567777776532 346778888889999987
No 428
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=85.57 E-value=21 Score=30.06 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCCCEEEEEeCCCcEEEEECCC--c----ee-EEEEcCCCCCeeEEEECCCCCEEEEEeCCC-eEEEEeCC
Q 048118 128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSN--C----KL-RATLAGHTGYVNTVAVSPDGSLCASGGKDG-VILLWDLA 199 (303)
Q Consensus 128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~--~----~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~v~iwd~~ 199 (303)
-+.++|+|++. ...++=+..+.|.-|++.. + +. ...+....+..-.++...+|.+.+++...| .|.+|+..
T Consensus 165 ~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 165 PNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred cCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 46799999874 2334444457788887642 1 11 122223345566788888898876554444 99999987
Q ss_pred CCceEEEecCC-CeEEEEEEcC
Q 048118 200 EGKRLYSLDAG-AVIHALCFSP 220 (303)
Q Consensus 200 ~~~~~~~~~~~-~~v~~~~~s~ 220 (303)
++.+..+... ..+.+++|--
T Consensus 244 -G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 244 -GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred -CcEEEEEECCCCCCccceEeC
Confidence 8887777654 6677777754
No 429
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.99 E-value=25 Score=30.48 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=71.7
Q ss_pred EEeeCCCEEE-EEeCCCcEEEE--ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118 88 AFSIDNRQIV-SASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT 164 (303)
Q Consensus 88 ~~~~~~~~l~-t~~~d~~i~vw--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 164 (303)
+|.++|+.|+ .+..|+.-.+| |+.+....++....... .....++|.+ ..++.......++-.|+++.+....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~--~~g~~~s~~~--~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN--TFGGFLSPDD--RALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-TTS--SEEEEEETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC--ccceEEecCC--CeEEEEECCCeEEEEECCcCcEEEE
Confidence 4677886554 44456665555 66555444443322211 1234455664 3555555567888889988776554
Q ss_pred EcCCCCCeeEEEE--CCCCCEEEEEe---CC-------------------CeEEEEeCCCCceEEEecCCCeEEEEEEcC
Q 048118 165 LAGHTGYVNTVAV--SPDGSLCASGG---KD-------------------GVILLWDLAEGKRLYSLDAGAVIHALCFSP 220 (303)
Q Consensus 165 ~~~~~~~i~~~~~--~~~~~~l~~~~---~d-------------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~ 220 (303)
+.-....+-...| +.++..++-.- .| ..|.-.|+.+|+.-..+.....+.-+.|||
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 5444444433444 44555543221 11 244555666666554455567788899999
Q ss_pred CC-eEEEEEc-------CCcEEEEeCCCC
Q 048118 221 NR-YWLCAAT-------EQSIKIWDLESK 241 (303)
Q Consensus 221 ~~-~~l~~~~-------~~~i~iwd~~~~ 241 (303)
.. .+++.+. |.+|++-|.+..
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 75 4556554 236666665543
No 430
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.88 E-value=39 Score=32.62 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-----eEEEEcCCCCCe----------eEEEECCCCCEEEEEeCCC
Q 048118 127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-----LRATLAGHTGYV----------NTVAVSPDGSLCASGGKDG 191 (303)
Q Consensus 127 ~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~i----------~~~~~~~~~~~l~~~~~d~ 191 (303)
+...++|+|... ..++.....|...||++.... .......+.+.+ ..+.|.++...|+++.. .
T Consensus 147 ~~aDv~FnP~~~-~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 147 PHADVAFNPWDQ-RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred ccceEEeccCcc-ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 456799999764 478899999999999992111 111111111222 25778887777777754 5
Q ss_pred eEEEEeCCCCce---EEEecCCCeEEEEEEcCC--CeEEEEEcCCcEEEEeCCC
Q 048118 192 VILLWDLAEGKR---LYSLDAGAVIHALCFSPN--RYWLCAATEQSIKIWDLES 240 (303)
Q Consensus 192 ~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~~~ 240 (303)
.+.++|+.+... +........+.++.-+|. +..+. -+...|...++..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~Fi-LTs~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFI-LTSKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEE-EecCeEEEEEccC
Confidence 788899987654 222233467888887777 33333 3446777777765
No 431
>PHA03098 kelch-like protein; Provisional
Probab=84.78 E-value=31 Score=31.49 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=26.5
Q ss_pred CcEEEEECCCceeEEEEcCCCCC-eeEEEECCCCCEEEEEeCC--------CeEEEEeCCCCc
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGY-VNTVAVSPDGSLCASGGKD--------GVILLWDLAEGK 202 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~ 202 (303)
..+..||..+++....-...... -.++ ...++..++.|+.+ ..+.+||..+.+
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 45788998776543211100010 1111 22245666777643 237788887665
No 432
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=84.58 E-value=33 Score=31.78 Aligned_cols=106 Identities=12% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCCEEEEEeCCCc-----EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC------CcEEEEECCCce
Q 048118 92 DNRQIVSASRDRT-----IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD------RTVKVWNLSNCK 160 (303)
Q Consensus 92 ~~~~l~t~~~d~~-----i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d------g~i~iwd~~~~~ 160 (303)
+|...+.||.|+. +-.||...+.................+.+. + ...+.||.+ .++..||..+++
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~--g--~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG--G--KLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEEC--C--EEEEEcCcCCCccccceEEEEcCCCCc
Confidence 5667788888864 555666544332221111111111222222 1 245556644 357888887766
Q ss_pred eEEE--EcCCCCCeeEEEECCCCCEEEEEeCCC-----eEEEEeCCCCce
Q 048118 161 LRAT--LAGHTGYVNTVAVSPDGSLCASGGKDG-----VILLWDLAEGKR 203 (303)
Q Consensus 161 ~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~ 203 (303)
.... +........ ++. -++...+.|+.|+ +|..+|.++.+.
T Consensus 456 W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 456 WTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred eeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 4322 111111122 222 2466778888776 366788776654
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.48 E-value=37 Score=32.08 Aligned_cols=116 Identities=9% Similarity=0.037 Sum_probs=64.8
Q ss_pred CEEEEEEee--CCCEEEEEeCCCcEEEEecCC-------c---eee-----eee--cCCCCccceEEEEEcCCCCCCEEE
Q 048118 83 DVLSVAFSI--DNRQIVSASRDRTIKLWNTLG-------E---CKY-----TIQ--EGDAHTEWVSCVRFSPNTLQPTIV 143 (303)
Q Consensus 83 ~i~~i~~~~--~~~~l~t~~~d~~i~vw~~~~-------~---~~~-----~~~--~~~~~~~~i~~~~~~~~~~~~~~~ 143 (303)
.|+.|.... ..+.|+.|..||.|.+|.... . ... .+. ..........+++++.......++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 455555543 456899999999999996410 0 000 000 000112245677777222234666
Q ss_pred EEeCCCcEEEEECCC--ceeEE-EEcCCCCCeeEEEECCCC-----C-EEEEEeCCCeEEEEeC
Q 048118 144 SASWDRTVKVWNLSN--CKLRA-TLAGHTGYVNTVAVSPDG-----S-LCASGGKDGVILLWDL 198 (303)
Q Consensus 144 ~~~~dg~i~iwd~~~--~~~~~-~~~~~~~~i~~~~~~~~~-----~-~l~~~~~d~~v~iwd~ 198 (303)
+++....|.+|-... .+... .-..+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 666667777764432 22111 111134567788886533 2 6777888999998887
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.29 E-value=29 Score=30.69 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=50.0
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE----EecCC-CeEEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118 169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY----SLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDL 238 (303)
Q Consensus 169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~----~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~ 238 (303)
.++|.+++||+|.+.||+--.|..|.+++....+... +.+.+ ..|...+|+.. .-+|.-++..+.+|-.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v 139 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQV 139 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEE
Confidence 5689999999999999999999999999985444322 22223 34888899865 4455555666777754
No 435
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.23 E-value=27 Score=30.27 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=38.0
Q ss_pred EEcCCCCCCEEEEEeCCCc--EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce--EEEe
Q 048118 132 RFSPNTLQPTIVSASWDRT--VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR--LYSL 207 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~ 207 (303)
+|.+++. ..++++..+|. +...|+.+++..+.-.+-........++|+++.++-......|+-.|+.+.+. ++.+
T Consensus 42 ~ft~dG~-kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGR-KLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS--EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCC-EEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 3556653 34555666665 55558888876553332212233456778888776555567889999988754 4444
Q ss_pred c
Q 048118 208 D 208 (303)
Q Consensus 208 ~ 208 (303)
+
T Consensus 121 p 121 (386)
T PF14583_consen 121 P 121 (386)
T ss_dssp -
T ss_pred C
Confidence 3
No 436
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.39 E-value=40 Score=32.53 Aligned_cols=131 Identities=10% Similarity=0.130 Sum_probs=73.3
Q ss_pred ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118 17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI 96 (303)
Q Consensus 17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l 96 (303)
+.-.|+|+|.....||.....|...+|++....+.............+.+ ...++ ..+.-..|.|.++...|
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi---~~d~~-----e~s~w~rI~W~~~~~~l 218 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI---IFDPE-----ELSNWKRILWVSDSNRL 218 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc---cCCCc-----ccCcceeeEecCCCCEE
Confidence 45578999987889999999999999999322211111111111111111 00000 11445578998888888
Q ss_pred EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118 97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158 (303)
Q Consensus 97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~ 158 (303)
+.++. ..+.++|+.+...............|..++-+|.... .++.- ....|...++..
T Consensus 219 Lv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~-~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 219 LVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPS-HVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred EEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccc-eEEEE-ecCeEEEEEccC
Confidence 87766 4578888765433221111223456888887776322 22222 335666666655
No 437
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.26 E-value=31 Score=30.25 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=94.2
Q ss_pred eeeeecCCCCCcEEEEecCCC----cEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118 18 VTAIATPIDNSDMIVTASRDK----SIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN 93 (303)
Q Consensus 18 v~~v~~~~~~~~~~~t~s~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~ 93 (303)
+....++|++..++++-+..| +|++.|+..+..... . + ..- .-..+.|.+++
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d----~-------i-----------~~~--~~~~~~W~~d~ 181 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD----G-------I-----------ENP--KFSSVSWSDDG 181 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE----E-------E-----------EEE--ESEEEEECTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC----c-------c-----------ccc--ccceEEEeCCC
Confidence 335678887755555545544 488888875421100 0 0 000 01138899988
Q ss_pred CEEEEEeCCC-----------cEEEEecCCceee--eeecCCCCccceEEEEEcCCCCCCEEEEEeCC---CcEEEEECC
Q 048118 94 RQIVSASRDR-----------TIKLWNTLGECKY--TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD---RTVKVWNLS 157 (303)
Q Consensus 94 ~~l~t~~~d~-----------~i~vw~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d---g~i~iwd~~ 157 (303)
+.|+....+. .|..|++...... .+............+..++++. ..++..... ..+.+.|+.
T Consensus 182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~-~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR-YLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS-EEEEEEESSSSEEEEEEEECC
T ss_pred CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc-EEEEEEEccccCCeEEEEecc
Confidence 7765554333 2566665432211 2222111122256677888763 344443333 357777887
Q ss_pred Cc----eeEEEEcCCCCCe-eEEEECCCCCEEEEE---eCCCeEEEEeCCCCce---E-EEecCC--CeEEEEEEcCCCe
Q 048118 158 NC----KLRATLAGHTGYV-NTVAVSPDGSLCASG---GKDGVILLWDLAEGKR---L-YSLDAG--AVIHALCFSPNRY 223 (303)
Q Consensus 158 ~~----~~~~~~~~~~~~i-~~~~~~~~~~~l~~~---~~d~~v~iwd~~~~~~---~-~~~~~~--~~v~~~~~s~~~~ 223 (303)
.. .....+......+ ..+... .+.+++.. ...+.|...++..... . ..+... ..+..+....+..
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence 64 2222333233333 334333 34344433 2346777778776542 1 112222 2456665554444
Q ss_pred EEEEEcCC--cEEEEeCCCCc
Q 048118 224 WLCAATEQ--SIKIWDLESKS 242 (303)
Q Consensus 224 ~l~~~~~~--~i~iwd~~~~~ 242 (303)
++..-.++ .|+++++..+.
T Consensus 340 vl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 340 VLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEEEEETTEEEEEEEETT-TE
T ss_pred EEEEEECCccEEEEEECCCCc
Confidence 44444443 68999988333
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=82.84 E-value=5.7 Score=37.85 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=44.4
Q ss_pred eeeecCC--CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118 19 TAIATPI--DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI 96 (303)
Q Consensus 19 ~~v~~~~--~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l 96 (303)
-.|.|+| .+.-++--+-.++++++..+..... ..+.+|+.++.+.++-..+ -+.--..+|||..|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~------~l~rsHs~~~~d~a~~~~g-------~~~l~~lSpDGtv~ 250 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR------SLFRSHSQRVTDMAFFAEG-------VLKLASLSPDGTVF 250 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH------HHHHhcCCCcccHHHHhhc-------hhhheeeCCCCcEE
Confidence 4455555 2234555555677888776653222 1122344433332221111 11112378999999
Q ss_pred EEEeCCCcEEEEec
Q 048118 97 VSASRDRTIKLWNT 110 (303)
Q Consensus 97 ~t~~~d~~i~vw~~ 110 (303)
++.+.||.++.|.+
T Consensus 251 a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 251 AWAISDGSVGFYQI 264 (1283)
T ss_pred EEeecCCccceeee
Confidence 99999999999975
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.35 E-value=49 Score=31.23 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=35.0
Q ss_pred CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 200 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 200 (303)
-.|+||+.. |++...+....+++-.+.|+.+. .|++-..+|++.++++..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 458888874 44444444444577788998654 566777999999999864
No 440
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.16 E-value=42 Score=30.32 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=21.6
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEE
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLW 108 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw 108 (303)
+|..+..++.|+.++-.|.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 57788899999999999999876654
No 441
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.95 E-value=5.7 Score=20.19 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=18.0
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEE
Q 048118 183 LCASGGKDGVILLWDLAEGKRLYS 206 (303)
Q Consensus 183 ~l~~~~~d~~v~iwd~~~~~~~~~ 206 (303)
.+..++.+|.+..+|..+|+.+.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 466677788888888888776654
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.80 E-value=43 Score=30.18 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=56.8
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCC-------CEEEEEeCCCeEEEEeCC-CCceEEEecCCCe
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG-------SLCASGGKDGVILLWDLA-EGKRLYSLDAGAV 212 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~ 212 (303)
.+..|+....++-.|+.-++.+.++.-|... -+.+.|.. ..-++|-.+..|--.|.+ .|..+........
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 4445666667777788888888777766543 45666642 122345455555555654 3444443332222
Q ss_pred -----EEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118 213 -----IHALCFSPNRYWLCAATEQSIKIWDL 238 (303)
Q Consensus 213 -----v~~~~~s~~~~~l~~~~~~~i~iwd~ 238 (303)
..+..-...|.+.+++..|.|++||.
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDR 590 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDR 590 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehh
Confidence 23333334577778888899999995
No 443
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.28 E-value=7.1 Score=20.87 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=19.2
Q ss_pred CCCCeeEEEECCCCCEEEEEeC-C--CeEEEE
Q 048118 168 HTGYVNTVAVSPDGSLCASGGK-D--GVILLW 196 (303)
Q Consensus 168 ~~~~i~~~~~~~~~~~l~~~~~-d--~~v~iw 196 (303)
.........|+|||+.|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456778899999998866553 4 555554
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.95 E-value=55 Score=30.93 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=35.3
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--CCeEEEEEEcC
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAVIHALCFSP 220 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~ 220 (303)
+.+..+.+||+.++|+.-..+|.+.+-+....+.+..+.. ...-.+++|..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 3566788899999999888999999888776666555542 22333455543
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=79.15 E-value=49 Score=29.87 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=47.8
Q ss_pred eCCCEEEEEeCCC-----cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC--CcEEEEECCCceeEE
Q 048118 91 IDNRQIVSASRDR-----TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD--RTVKVWNLSNCKLRA 163 (303)
Q Consensus 91 ~~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d--g~i~iwd~~~~~~~~ 163 (303)
.++.+++.||.++ .+..||.....................+.. ++ ...+.||.+ ..+..||..+++...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~--~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NN--KLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CC--EEEEECCcCCCCceEEEECCCCeEEE
Confidence 3455667777543 355667654433222211111111112222 22 234555543 457888876654322
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCC---eEEEEeCCCCc
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDG---VILLWDLAEGK 202 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~ 202 (303)
.-.-...........-+++..+.|+.++ .+..||.++.+
T Consensus 346 ~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 346 MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 1111111111111122566667777543 46677776554
No 446
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.30 E-value=55 Score=29.99 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=42.1
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcC--CCCCeeEEEECC--CCCEEEEEe------CCCeEEEEeCCCCceEEEe
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAG--HTGYVNTVAVSP--DGSLCASGG------KDGVILLWDLAEGKRLYSL 207 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~~------~d~~v~iwd~~~~~~~~~~ 207 (303)
.++.++.++.+.-.|.++++....... +... ..+.-+| .+..++++. .+|.|.-+|.++|+.+.++
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 567788899999999999987755432 1100 0111122 123444443 2689999999999988765
No 447
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.25 E-value=6.5 Score=36.95 Aligned_cols=94 Identities=10% Similarity=0.133 Sum_probs=51.5
Q ss_pred EEEEeeCCCEEEEEeCCC-----cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118 86 SVAFSIDNRQIVSASRDR-----TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160 (303)
Q Consensus 86 ~i~~~~~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 160 (303)
.++|-|+|+.++|-+.|+ .|+.+...+-....+....+.......++|+... .+........+.+|...+-.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s---~vlav~~~n~~~lwttkNyh 327 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS---TVLAVAEGNLLKLWTTKNYH 327 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH---HHHHHhhcceEEEEEccceE
Confidence 378999999999988665 3555554332111111111223344556666543 12233456789999876654
Q ss_pred eEEEEcCCCCCeeEEEECCCCC
Q 048118 161 LRATLAGHTGYVNTVAVSPDGS 182 (303)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~ 182 (303)
..-+..-.-..+.-+.|+|...
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEEeecCCCcceeeeccccC
Confidence 3222222234566788988543
No 448
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.13 E-value=38 Score=28.07 Aligned_cols=88 Identities=16% Similarity=0.324 Sum_probs=52.3
Q ss_pred cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe------CCCeEEEEeCCCCceEEEecC------CCeEEEEE
Q 048118 150 TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG------KDGVILLWDLAEGKRLYSLDA------GAVIHALC 217 (303)
Q Consensus 150 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~------~~~v~~~~ 217 (303)
.|++||..+.+...--.+-.+.|+.+.|..+.++++.|. ....+-.||+.+..-. .+.. ..++..+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEE
Confidence 488899877665443334457899999986666777664 3456778888765431 2222 35677766
Q ss_pred EcC-C--CeEEEEE-cC--CcEEEEeC
Q 048118 218 FSP-N--RYWLCAA-TE--QSIKIWDL 238 (303)
Q Consensus 218 ~s~-~--~~~l~~~-~~--~~i~iwd~ 238 (303)
+.. + ..+++.. .+ ..|..||=
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcC
Confidence 632 2 2343333 23 34677763
No 449
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.99 E-value=48 Score=29.11 Aligned_cols=144 Identities=12% Similarity=0.052 Sum_probs=76.7
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce----
Q 048118 85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---- 160 (303)
Q Consensus 85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---- 160 (303)
..+..++++.+++.+..-..++-||.-. ..+.... ......+..+.+.+++ .++..+..|.+..=+ ..++
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~-~~W~~~~-~~~~~~l~~v~~~~dg---~l~l~g~~G~l~~S~-d~G~~~~~ 315 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQ-PYWQPHN-RASARRIQNMGWRADG---GLWLLTRGGGLYVSK-GTGLTEED 315 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCC-cceEEec-CCCccceeeeeEcCCC---CEEEEeCCceEEEec-CCCCcccc
Confidence 3345566666666554433333344311 1111111 1223457788887765 244445666665432 2222
Q ss_pred -eEEEEcC--CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeEEEEEEcCCCeEEEEEcCCcE
Q 048118 161 -LRATLAG--HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVIHALCFSPNRYWLCAATEQSI 233 (303)
Q Consensus 161 -~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~i 233 (303)
....... ....+.++.+.+++..+++| ..|.+.... ..++.-.... .....+.+.|.+++...+.+.+|.|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 1122211 11347888898877665554 677766553 3343322211 2346788998888888888888887
Q ss_pred EEE
Q 048118 234 KIW 236 (303)
Q Consensus 234 ~iw 236 (303)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 450
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.76 E-value=16 Score=34.59 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=80.5
Q ss_pred EEEEEeCCCcEEEEecCCceeee--eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE--------EECCCceeEEE
Q 048118 95 QIVSASRDRTIKLWNTLGECKYT--IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV--------WNLSNCKLRAT 164 (303)
Q Consensus 95 ~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i--------wd~~~~~~~~~ 164 (303)
.+..|+.++.+.++.-....... ..........+.++.+++.. +..|.-||++-. ||.. +...
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S----lgagl~dgt~a~y~rap~gSwd~e---p~~~ 621 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS----LGAGLIDGTLAVYGRAPSGSWDGE---PNIS 621 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc----cccCccCCccccccCCCCCCCCCC---Cccc
Confidence 45667788888887643111111 11112233445666665543 233444444433 4443 1122
Q ss_pred EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe----cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCC
Q 048118 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL----DAGAVIHALCFSPNRYWLCAATEQSIKIWDLES 240 (303)
Q Consensus 165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~ 240 (303)
+..-..+|.+.++..+ +..++.+|.|.++...+....+.. .....|+.+.+...+-|++.+....++.++.++
T Consensus 622 ~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred cccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 2223457777777643 566778999999988765544332 345689999999889999888887888776554
Q ss_pred C
Q 048118 241 K 241 (303)
Q Consensus 241 ~ 241 (303)
-
T Consensus 699 l 699 (925)
T KOG3522|consen 699 L 699 (925)
T ss_pred c
Confidence 3
No 451
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.57 E-value=16 Score=27.61 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=24.5
Q ss_pred CCeeEEEECCCC------CEEEEEeCCCeEEEEeCCC
Q 048118 170 GYVNTVAVSPDG------SLCASGGKDGVILLWDLAE 200 (303)
Q Consensus 170 ~~i~~~~~~~~~------~~l~~~~~d~~v~iwd~~~ 200 (303)
..+..++|||.| .+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 368889999954 3678888999999997543
No 452
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.51 E-value=18 Score=24.00 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=27.1
Q ss_pred EeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCC
Q 048118 187 GGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQ 231 (303)
Q Consensus 187 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 231 (303)
+..+|++-.||..+++.-.-...-.-.+.+++++++..+..+..+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 445678888998887643333322356788999998877666543
No 453
>PHA02790 Kelch-like protein; Provisional
Probab=77.01 E-value=57 Score=29.46 Aligned_cols=104 Identities=7% Similarity=-0.064 Sum_probs=46.7
Q ss_pred eCCCEEEEEeCC--CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC---CcEEEEECCCceeEEEE
Q 048118 91 IDNRQIVSASRD--RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD---RTVKVWNLSNCKLRATL 165 (303)
Q Consensus 91 ~~~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d---g~i~iwd~~~~~~~~~~ 165 (303)
.++...+.||.+ ..+..|+...+.................+... + ...+.||.+ ..+..||.++++....-
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~--g--~IYviGG~~~~~~~ve~ydp~~~~W~~~~ 392 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASIN--N--VIYVIGGHSETDTTTEYLLPNHDQWQFGP 392 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEEC--C--EEEEecCcCCCCccEEEEeCCCCEEEeCC
Confidence 456666777754 34667776443322221111011111122221 1 234555544 34778888766543211
Q ss_pred cC--CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Q 048118 166 AG--HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203 (303)
Q Consensus 166 ~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 203 (303)
.- .......+. -+++..+.|+ .+.++|..+.+-
T Consensus 393 ~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 393 STYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTW 427 (480)
T ss_pred CCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcE
Confidence 11 111111122 2455556663 467788876543
No 454
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=77.00 E-value=7.2 Score=21.08 Aligned_cols=19 Identities=5% Similarity=0.008 Sum_probs=14.6
Q ss_pred CCeEEEEEcCCcEEEEeCC
Q 048118 221 NRYWLCAATEQSIKIWDLE 239 (303)
Q Consensus 221 ~~~~l~~~~~~~i~iwd~~ 239 (303)
++.+++.+.+|.++.+|.+
T Consensus 21 ~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEeCC
Confidence 6677777888999998875
No 455
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.38 E-value=43 Score=27.79 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=66.2
Q ss_pred ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC-CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Q 048118 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH-TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203 (303)
Q Consensus 125 ~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 203 (303)
...+.++.|+|+. ..+++......-.++=-..++...++.-- -.....+.+.-++++.++--.++++.++.+.....
T Consensus 85 ~~nvS~LTynp~~--rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 85 TANVSSLTYNPDT--RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccceeeCCCc--ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 3448999999986 34555555555444433456666655321 12334567777777777777889999887765532
Q ss_pred EEE-----ec-----C-CCeEEEEEEcCCCeEEEEEc-CCcEEEEeCC
Q 048118 204 LYS-----LD-----A-GAVIHALCFSPNRYWLCAAT-EQSIKIWDLE 239 (303)
Q Consensus 204 ~~~-----~~-----~-~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~ 239 (303)
+.. ++ . ....-.++|+|....+..+. -.=+.||.+.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 211 11 1 23456789999865554444 3335555543
No 456
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=75.86 E-value=76 Score=30.39 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=43.5
Q ss_pred EEEECCCCCEEEEEeCCC-----eEEEEeCCC---CceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc
Q 048118 174 TVAVSPDGSLCASGGKDG-----VILLWDLAE---GKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKS 242 (303)
Q Consensus 174 ~~~~~~~~~~l~~~~~d~-----~v~iwd~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~ 242 (303)
.++|-|+|..+++-..|| .|..+.... |+.-........+...+|+-....++++..+.|.+|-.++..
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyh 327 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYH 327 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceE
Confidence 478999999998876554 444454221 111111122334556777766777788888999999876643
No 457
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=75.33 E-value=11 Score=20.22 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=17.2
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEecC
Q 048118 184 CASGGKDGVILLWDLAEGKRLYSLDA 209 (303)
Q Consensus 184 l~~~~~d~~v~iwd~~~~~~~~~~~~ 209 (303)
+..++.+|.+.-.|.++|+.+..++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 34446677777777777777766543
No 458
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=74.75 E-value=63 Score=28.90 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=36.1
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeec-----CCCCccceEEEEEcCCC
Q 048118 82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQE-----GDAHTEWVSCVRFSPNT 137 (303)
Q Consensus 82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~ 137 (303)
...+.|+|.|++.+|++--..|.|++++..+........ ..........++++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 456789999999888876656899988753321111110 01124567899999974
No 459
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=71.55 E-value=37 Score=31.13 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=26.2
Q ss_pred eEEEEEcC--CCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118 128 VSCVRFSP--NTLQPTIVSASWDRTVKVWNLSNCKLRATL 165 (303)
Q Consensus 128 i~~~~~~~--~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 165 (303)
...++.++ -....++++.+.|+.+|+||+.++++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 44555555 112357889999999999999999885543
No 460
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=70.93 E-value=1.2e+02 Score=30.54 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCC--EEEEeecCCeEEEEe
Q 048118 273 YCTSLNWSVDGS--TLFSGYTDGVIRVWG 299 (303)
Q Consensus 273 ~~~~~~~sp~~~--~l~~gs~Dg~v~~w~ 299 (303)
.+.++.|--+|. .++++..|++|++|-
T Consensus 1183 ~v~s~EFLVdg~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1183 NVYSTEFLVDGSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred hceeeeeEEcCCeeEEEEEcCCCcEEEEE
Confidence 356677766765 688999999999884
No 461
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=70.52 E-value=67 Score=27.34 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=33.9
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeec----CCCCccceEEEEEcCC
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQE----GDAHTEWVSCVRFSPN 136 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~----~~~~~~~i~~~~~~~~ 136 (303)
..+.|+|.|+|+++++ ...|.|++++..+.....+.. ..........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 4578999999987775 558999999844432111111 1123446789999995
No 462
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=69.80 E-value=73 Score=27.52 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=32.1
Q ss_pred EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC-------CceEEE-ecC-----CCeEEEEEEcCCCeEEE
Q 048118 164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE-------GKRLYS-LDA-----GAVIHALCFSPNRYWLC 226 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------~~~~~~-~~~-----~~~v~~~~~s~~~~~l~ 226 (303)
.+.........+++.+++ +++ +......++.|... .+.+.. +.. ....+.++|.|++.+.+
T Consensus 66 vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv 139 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYF 139 (367)
T ss_pred EeecCCCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEE
Confidence 343334456788998888 444 44444333445421 112222 222 23366789999976544
No 463
>PRK13684 Ycf48-like protein; Provisional
Probab=69.71 E-value=70 Score=27.26 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=61.2
Q ss_pred ccceEEEEEcCCCCCCEEEEEeCCCcEEE-EECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Q 048118 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKV-WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203 (303)
Q Consensus 125 ~~~i~~~~~~~~~~~~~~~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 203 (303)
...+..+.+.|++ .++..+..|.+.. +|-...........-...++++.+.|+++.++++ ..|.+++=....++.
T Consensus 172 ~g~~~~i~~~~~g---~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDG---KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCC---eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 3457788888864 3445556666553 2221112222222334678899999998877665 567665422333332
Q ss_pred EEEec-----CCCeEEEEEEcCCCeEEEEEcCCcEEE
Q 048118 204 LYSLD-----AGAVIHALCFSPNRYWLCAATEQSIKI 235 (303)
Q Consensus 204 ~~~~~-----~~~~v~~~~~s~~~~~l~~~~~~~i~i 235 (303)
-.... ....+.++.+.|++.+++++.+|.+..
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~ 284 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV 284 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE
Confidence 11111 123467788988888888887776653
No 464
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=69.33 E-value=30 Score=22.82 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=30.3
Q ss_pred CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCC
Q 048118 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLA 199 (303)
Q Consensus 149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~ 199 (303)
+.|..||..+ ... ....-...+.+.++|++++|.+++ ..+.|.+++.+
T Consensus 36 ~~Vvyyd~~~--~~~-va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKE--VKV-VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCE--eEE-eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3455566532 222 222234567899999999886665 57899998764
No 465
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=68.08 E-value=1.3e+02 Score=29.66 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=44.0
Q ss_pred ccceEEEEEcCCCCC-C---EEEEEeCCCcEEEEECC-CceeEEE--EcC--CCCCeeEEEECCCCCEEEEEeCCCeEEE
Q 048118 125 TEWVSCVRFSPNTLQ-P---TIVSASWDRTVKVWNLS-NCKLRAT--LAG--HTGYVNTVAVSPDGSLCASGGKDGVILL 195 (303)
Q Consensus 125 ~~~i~~~~~~~~~~~-~---~~~~~~~dg~i~iwd~~-~~~~~~~--~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~i 195 (303)
...|.|+.++|-+.. + .++.|.++..+.+.-.. +...... +.+ -...|.-..+-.+..+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 456899999986432 2 67788887766554332 2221111 111 1123333445455788999999999887
Q ss_pred EeCC
Q 048118 196 WDLA 199 (303)
Q Consensus 196 wd~~ 199 (303)
+.+.
T Consensus 610 fv~d 613 (1096)
T KOG1897|consen 610 FVLD 613 (1096)
T ss_pred EEEE
Confidence 6553
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=67.87 E-value=30 Score=27.25 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=35.0
Q ss_pred CEEEEEeCCCeEEEEeCC--CCceEEEecCCCeEEEEEEcCCCeEEEEE
Q 048118 182 SLCASGGKDGVILLWDLA--EGKRLYSLDAGAVIHALCFSPNRYWLCAA 228 (303)
Q Consensus 182 ~~l~~~~~d~~v~iwd~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 228 (303)
..|..+...+.|.+|++. ..+.+.++..-+.|..+.++..|.++++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence 344444566789999998 34566777777889999999988877764
No 467
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=67.38 E-value=12 Score=35.04 Aligned_cols=34 Identities=18% Similarity=0.472 Sum_probs=28.2
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 203 (303)
..++++.-+|.++.++.+..||.+++++....+.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 4567788889999999999999999999865443
No 468
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=66.81 E-value=1e+02 Score=27.98 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=41.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118 180 DGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLE 239 (303)
Q Consensus 180 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 239 (303)
...+++.+|..|-|++||.-.-.....++ .+..|..+..+.+|.++.+.....|-+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 34599999999999999964322211222 2456777777888888777767778887764
No 469
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=66.33 E-value=1.3e+02 Score=29.11 Aligned_cols=68 Identities=24% Similarity=0.398 Sum_probs=45.3
Q ss_pred CEEEEEeCCCcEEEEECCCceeEEEEcCCCCCe-------------eEEEECC--CCCEEEEEeC----------CCeEE
Q 048118 140 PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV-------------NTVAVSP--DGSLCASGGK----------DGVIL 194 (303)
Q Consensus 140 ~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------d~~v~ 194 (303)
..++.++.|+.+.-.|.++++....+.. .+.+ ..+.-.| .+..+++|+. +|.|+
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 3677888999999999999987765532 1111 0111122 1345666642 68999
Q ss_pred EEeCCCCceEEEec
Q 048118 195 LWDLAEGKRLYSLD 208 (303)
Q Consensus 195 iwd~~~~~~~~~~~ 208 (303)
-+|+++|+.+..+.
T Consensus 340 A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 340 AFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCcEeeEEe
Confidence 99999999988764
No 470
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=66.30 E-value=29 Score=23.04 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=27.1
Q ss_pred EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE
Q 048118 145 ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG 187 (303)
Q Consensus 145 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 187 (303)
+..+|.+..||..+++....+.+ -...+.++++|++..++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 44567788899888775444433 3466889999999977655
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=65.60 E-value=1.1e+02 Score=27.77 Aligned_cols=98 Identities=23% Similarity=0.227 Sum_probs=48.2
Q ss_pred CCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCe----EEEEEEcCCC
Q 048118 147 WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----IHALCFSPNR 222 (303)
Q Consensus 147 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----v~~~~~s~~~ 222 (303)
..+...++|. ++..+..+.........+..-++|.+++... ..+..+|+. |+.+........ =+.+..-|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 3455666675 3444444432222221156678888776554 788889885 555544433221 3466777888
Q ss_pred eEEEEEc--------------CCcEEEEeCCCCceeeeeee
Q 048118 223 YWLCAAT--------------EQSIKIWDLESKSIVEDLKV 249 (303)
Q Consensus 223 ~~l~~~~--------------~~~i~iwd~~~~~~~~~~~~ 249 (303)
.+|+.+. ...|...| .+++++.....
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~ 241 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDF 241 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEG
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEeh
Confidence 7766544 23477778 88888877654
No 472
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=65.31 E-value=1.3e+02 Score=28.84 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=40.8
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
-++++.-+|.+..++.+..|++|++|+........+. ...+ -..+.|...+ +++...|..+.-|.-
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p----~~nlv~tnhg----l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKP----KENLVFTNHG----LVTATSDRRALAWKE 82 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCC----ccceeeeccc----eEEEeccchhheeec
Confidence 3567888899999999999999999997543221111 1111 1123343322 566777777766753
No 473
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=64.82 E-value=16 Score=18.01 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=16.5
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEE
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLW 108 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw 108 (303)
...++++++|..+++-...+.|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777766666666543
No 474
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=62.71 E-value=1e+02 Score=26.60 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=62.2
Q ss_pred EEEEEeCCCcEEEEECCCceeEEEEcCCC-CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCe----EEE
Q 048118 141 TIVSASWDRTVKVWNLSNCKLRATLAGHT-GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----IHA 215 (303)
Q Consensus 141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----v~~ 215 (303)
.+..++.++.++.+|..+++......... ..+-.-..-.++ .+..++.++.+...|..+++.+........ +..
T Consensus 113 ~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~ 191 (370)
T COG1520 113 KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYG 191 (370)
T ss_pred eEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCcccccccc
Confidence 57888999988889987887766655433 111111222233 333344788999889888888776543221 111
Q ss_pred EEEcCCCeEEEEEc--CCcEEEEeCCCCceeeeee
Q 048118 216 LCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 216 ~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~ 248 (303)
-....++..++... ++.+.-.|.+++..+.+.+
T Consensus 192 ~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 192 SPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred CceeecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 10112344444444 4567778888887776643
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=62.26 E-value=91 Score=25.93 Aligned_cols=29 Identities=14% Similarity=0.349 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118 273 YCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301 (303)
Q Consensus 273 ~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~ 301 (303)
....++..++|.++++--..+.|..|+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~ 215 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPD 215 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETT
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCC
Confidence 34456778888888888889999999875
No 476
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=61.86 E-value=27 Score=33.70 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=42.5
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccc-----------eEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEW-----------VSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
-|.++..++..+-.++.+++-.........+ ..|... +.--..+|++ ..++.++.||.+++|.+
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~---rsHs~~~~d~a~~~~g~~~l~~lSpDG--tv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALRSLF---RSHSQRVTDMAFFAEGVLKLASLSPDG--TVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHHHHH---HhcCCCcccHHHHhhchhhheeeCCCC--cEEEEeecCCccceeee
Confidence 3334556777777788888755422111111 012211 1112367886 47899999999999975
Q ss_pred C-----CceeEEEEcCCC
Q 048118 157 S-----NCKLRATLAGHT 169 (303)
Q Consensus 157 ~-----~~~~~~~~~~~~ 169 (303)
. ...+....+.|.
T Consensus 265 yi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeccccHhhhhccCCCC
Confidence 3 123444455554
No 477
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=60.97 E-value=96 Score=27.63 Aligned_cols=156 Identities=13% Similarity=0.087 Sum_probs=80.8
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeec-CCCCc---cceE-EEEEcCCCCCCEEEEEeCCCcEEEE-ECC
Q 048118 84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQE-GDAHT---EWVS-CVRFSPNTLQPTIVSASWDRTVKVW-NLS 157 (303)
Q Consensus 84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~---~~i~-~~~~~~~~~~~~~~~~~~dg~i~iw-d~~ 157 (303)
+..+-..|+|+.+..-+. ..+.++++.+.....-+. .+... ..|. .+..-. + ..-++.+..||.|-=| |.+
T Consensus 223 v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-G-g~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-G-GFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred hHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-C-ceeEEEEcCCCceeeeeeee
Confidence 445667789987665444 568888764432110000 00000 0111 010001 1 1246677888887766 554
Q ss_pred Cc-ee-EEE---EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCc
Q 048118 158 NC-KL-RAT---LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQS 232 (303)
Q Consensus 158 ~~-~~-~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 232 (303)
.+ .. ... ++-...++..+.-..+.+-+++-...|++.++.-...+.+..-..-....-+++||.+..+..-..|+
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~gk 379 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSEDQGK 379 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeecCCc
Confidence 32 21 111 11111223322222233456777778888777654433332212222455678999998888889999
Q ss_pred EEEEeCCCCc
Q 048118 233 IKIWDLESKS 242 (303)
Q Consensus 233 i~iwd~~~~~ 242 (303)
|+++.+++..
T Consensus 380 i~~~~l~Nr~ 389 (733)
T COG4590 380 IRLAQLENRN 389 (733)
T ss_pred eEEEEecCCC
Confidence 9999987753
No 478
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=60.95 E-value=99 Score=25.88 Aligned_cols=139 Identities=18% Similarity=0.122 Sum_probs=82.3
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-- 160 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-- 160 (303)
.+..+.++. +++..+..+.-+++.|+...........-.-...-.++..+- ++...+..+.-+.+.|+.+.+
T Consensus 88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsG----n~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSG----NYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecC----CEEEEeeccCcEEEEECCCCCCc
Confidence 344555554 456666677789999986543322221111113344555443 355566667777788886532
Q ss_pred -eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc---eEEEecCCCeEEEEEEcCCCeEEEEEc
Q 048118 161 -LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK---RLYSLDAGAVIHALCFSPNRYWLCAAT 229 (303)
Q Consensus 161 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~ 229 (303)
+...+.........+++| |++-..+..|+-+.+.|+.... .+...+.+..++++..+++.-+++...
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence 333344334444567776 6777778889999999986543 233344455788888888776665543
No 479
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=59.89 E-value=1.5e+02 Score=28.73 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=38.2
Q ss_pred EECCCCCEEEEEeC---------CCeEEEEeCCCCce-EEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118 176 AVSPDGSLCASGGK---------DGVILLWDLAEGKR-LYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL 238 (303)
Q Consensus 176 ~~~~~~~~l~~~~~---------d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~ 238 (303)
.++|+.++++.+.. -+...++++.++.. .........+..+.|+|.+..++-.-.+.|+.+.-
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~niy~~~~ 175 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLHNNIYYQSS 175 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEecccccccC
Confidence 55666666555533 23556777776662 22223345678899999987777666666665443
No 480
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=59.42 E-value=1.6e+02 Score=27.81 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=83.1
Q ss_pred cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeee-ecCCCCcc-ceEEEEEcCCCC----CCEEEEEeC-C---Cc
Q 048118 81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTI-QEGDAHTE-WVSCVRFSPNTL----QPTIVSASW-D---RT 150 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~~~~~-~i~~~~~~~~~~----~~~~~~~~~-d---g~ 150 (303)
.+.|..+.+.++++.+++.-..|.|.+||......... ...-.+.. .+.. +|-++.. ...+++.+. + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 56788999999999999999999999999822111100 00001111 1111 2222111 223433333 2 23
Q ss_pred EEEEEC--CCceeEEEEc---CCCCCee--EEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--------CeEEE
Q 048118 151 VKVWNL--SNCKLRATLA---GHTGYVN--TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--------AVIHA 215 (303)
Q Consensus 151 i~iwd~--~~~~~~~~~~---~~~~~i~--~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------~~v~~ 215 (303)
.+++.+ ..... .++. .+..... .+++. +|.+..- .++++.+|++..-+...++... ..+.-
T Consensus 208 ykL~~l~~~~~~~-~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 208 YKLISLSNESSSI-FELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred EEEEEeccCCcce-EEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 566666 22221 1221 1111122 23332 4543322 6779999999877766655322 12222
Q ss_pred EEEcCCCeEEEEEcCCcEEEEeCCCCceeeeee
Q 048118 216 LCFSPNRYWLCAATEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 216 ~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~ 248 (303)
.+.+++ .+..+.++.|++.|+.-..++.+..
T Consensus 284 ~~~s~n--RvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 284 KPPSPN--RVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ecCCCC--eEEEEcCCEEEEEeehhhhhhhhhh
Confidence 222333 4455667899999987666655443
No 481
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=59.05 E-value=2e+02 Score=28.74 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=52.2
Q ss_pred CCcEEEEECCCceeEEEEcCCC----CCeeEEEECCCCC--EEEEEeC-----------CCeEEEEeCC-CCce---EEE
Q 048118 148 DRTVKVWNLSNCKLRATLAGHT----GYVNTVAVSPDGS--LCASGGK-----------DGVILLWDLA-EGKR---LYS 206 (303)
Q Consensus 148 dg~i~iwd~~~~~~~~~~~~~~----~~i~~~~~~~~~~--~l~~~~~-----------d~~v~iwd~~-~~~~---~~~ 206 (303)
-..|++.|..+++....+.... -.+..+.|+.... +++++.. +|.++.|++- .++. ++.
T Consensus 852 ~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~ 931 (1205)
T KOG1898|consen 852 VSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK 931 (1205)
T ss_pred cceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec
Confidence 3457888877665443332111 2345556655332 3333321 2335555542 3332 222
Q ss_pred ecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118 207 LDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 207 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~ 247 (303)
......+.++ .|.+..+.++....+++||+...++++..
T Consensus 932 T~~~~~v~Ai--~~f~~~~LagvG~~l~~YdlG~K~lLRk~ 970 (1205)
T KOG1898|consen 932 TEIPGPVGAI--CPFQGRVLAGVGRFLRLYDLGKKKLLRKC 970 (1205)
T ss_pred cCCCccceEE--eccCCEEEEecccEEEEeeCChHHHHhhh
Confidence 2334455544 46555666777789999999877666543
No 482
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=58.17 E-value=1.1e+02 Score=25.68 Aligned_cols=217 Identities=14% Similarity=0.126 Sum_probs=105.7
Q ss_pred eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC------
Q 048118 19 TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID------ 92 (303)
Q Consensus 19 ~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~------ 92 (303)
+.|+++|.+ .+.++....+...+||-...... +... .+ .+.++..... .-.+..+.+.|+..
T Consensus 26 WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~-g~~~--------~L-~vtiP~~~~~-~~~~~PTGiVfN~~~~F~vt 93 (336)
T TIGR03118 26 WGLSYRPGG-PFWVANTGTGTATLYVGNPDTQP-LVQD--------PL-VVVIPAPPPL-AAEGTPTGQVFNGSDTFVVS 93 (336)
T ss_pred ceeEecCCC-CEEEecCCcceEEeecCCccccc-CCcc--------ce-EEEecCCCCC-CCCCCccEEEEeCCCceEEc
Confidence 368899865 57888888889999998633211 1100 00 0111100000 00112233333321
Q ss_pred ------CCEEEEEeCCCcEEEEecCCcee----eeeecCCCCccce-EEEEEcCCCCCCEEEEE-eCCCcEEEEECCCce
Q 048118 93 ------NRQIVSASRDRTIKLWNTLGECK----YTIQEGDAHTEWV-SCVRFSPNTLQPTIVSA-SWDRTVKVWNLSNCK 160 (303)
Q Consensus 93 ------~~~l~t~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~-~~dg~i~iwd~~~~~ 160 (303)
...++.+++||+|.-|...-... ..+...+.....+ ..+++........|..+ =.++.|.+||-.-.+
T Consensus 94 ~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~ 173 (336)
T TIGR03118 94 GEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP 173 (336)
T ss_pred CCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence 13478889999999998532222 1111111111222 34555543222233322 346888888753222
Q ss_pred eE--EEEcCC----------------CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCe---EEEEEEc
Q 048118 161 LR--ATLAGH----------------TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV---IHALCFS 219 (303)
Q Consensus 161 ~~--~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---v~~~~~s 219 (303)
.. ..+... .-.|+-..-.++.+.=+.+.--|.|.++|+. ++.++.+..+.. -+.++..
T Consensus 174 ~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 174 PPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred ccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeC
Confidence 11 001100 0012222223333222333345788999864 566666654432 2335554
Q ss_pred C------CCeEEEE-EcCCcEEEEeCCCCceeeeee
Q 048118 220 P------NRYWLCA-ATEQSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 220 ~------~~~~l~~-~~~~~i~iwd~~~~~~~~~~~ 248 (303)
| .+.+|+. -.||+|..||..+++.+..+.
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 4 2445544 359999999999888876654
No 483
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=58.03 E-value=92 Score=24.61 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=34.1
Q ss_pred EEEEeCCCcEEEEECC--CceeEEEEcCCCCCeeEEEECCCCCEEEEEeC
Q 048118 142 IVSASWDRTVKVWNLS--NCKLRATLAGHTGYVNTVAVSPDGSLCASGGK 189 (303)
Q Consensus 142 ~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 189 (303)
++.+.....|.+|++. ..+...++..- +.|..+.++..|.++++--+
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 3333566679999987 34455666543 78899999999999988643
No 484
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.92 E-value=1.9e+02 Score=29.02 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=24.7
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEecCC
Q 048118 83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLG 112 (303)
Q Consensus 83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~ 112 (303)
....++|+|....++.+..+|.|+++....
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccc
Confidence 344678999999999999999999997543
No 485
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=56.01 E-value=1.6e+02 Score=26.67 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=55.5
Q ss_pred EEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC---CeeEEEECCCCCEEEEEeC-------------CCeEE
Q 048118 131 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG---YVNTVAVSPDGSLCASGGK-------------DGVIL 194 (303)
Q Consensus 131 ~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~-------------d~~v~ 194 (303)
+..-+++ .++.+.. ..+..+|+.. +....+.-..+ .=..+..-|+|++|+.+.. .-.|.
T Consensus 153 ~~~l~nG---~ll~~~~-~~~~e~D~~G-~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Iv 227 (477)
T PF05935_consen 153 FKQLPNG---NLLIGSG-NRLYEIDLLG-KVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIV 227 (477)
T ss_dssp EEE-TTS----EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEE
T ss_pred eeEcCCC---CEEEecC-CceEEEcCCC-CEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEE
Confidence 3344554 2333333 7788888754 33333321111 1245677799998877762 12345
Q ss_pred EEeCCCCceEEEecC--------C--------------------CeEEEEEEcC-CCeEEEEEc-CCcEEEEeCCCCcee
Q 048118 195 LWDLAEGKRLYSLDA--------G--------------------AVIHALCFSP-NRYWLCAAT-EQSIKIWDLESKSIV 244 (303)
Q Consensus 195 iwd~~~~~~~~~~~~--------~--------------------~~v~~~~~s~-~~~~l~~~~-~~~i~iwd~~~~~~~ 244 (303)
.+| .+|+.+..+.. . ..++++.+.+ ++.+++++- ...|...|.+++++.
T Consensus 228 evd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 228 EVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp EE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred EEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 555 66665544310 0 2488999988 566666665 447999998888876
Q ss_pred eeee
Q 048118 245 EDLK 248 (303)
Q Consensus 245 ~~~~ 248 (303)
..+.
T Consensus 307 Wilg 310 (477)
T PF05935_consen 307 WILG 310 (477)
T ss_dssp EEES
T ss_pred EEeC
Confidence 5543
No 486
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=55.68 E-value=76 Score=22.96 Aligned_cols=111 Identities=10% Similarity=0.138 Sum_probs=55.1
Q ss_pred CCEEEEEeCCCcEEEEecCCceee------eeecCCCCccceEEEE---EcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118 93 NRQIVSASRDRTIKLWNTLGECKY------TIQEGDAHTEWVSCVR---FSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163 (303)
Q Consensus 93 ~~~l~t~~~d~~i~vw~~~~~~~~------~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 163 (303)
..-|+.+..-++|.|++....... .+.... -+..|.+++ +.|+.....|+ .+....+..||+.++.-..
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~Ll-iGt~t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLL-IGTQTSLLAYDVENNSDLF 87 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEE-EeccceEEEEEcccCchhh
Confidence 334555666677777765321100 000000 122355554 44443333444 4566789999997654322
Q ss_pred EEcCCCCCeeEEEEC---C-CCCEEEEEeCCCeEEEEeCCCCceEEEe
Q 048118 164 TLAGHTGYVNTVAVS---P-DGSLCASGGKDGVILLWDLAEGKRLYSL 207 (303)
Q Consensus 164 ~~~~~~~~i~~~~~~---~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 207 (303)
++.-.+.+.++.+- . ...++++| -...|+-+|-...+..++.
T Consensus 88 -yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 88 -YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred -hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 12223566666652 2 23344444 4567777776655554443
No 487
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=48.43 E-value=95 Score=26.02 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=32.1
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec
Q 048118 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD 208 (303)
Q Consensus 172 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 208 (303)
++++...++|.+|+++..-..|.+.|.++++.+..+.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lg 182 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLG 182 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeC
Confidence 6777888899999999888999999999998888774
No 488
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=48.17 E-value=35 Score=16.89 Aligned_cols=24 Identities=4% Similarity=0.108 Sum_probs=18.1
Q ss_pred ceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118 127 WVSCVRFSPNTLQPTIVSASWDRTVKVW 154 (303)
Q Consensus 127 ~i~~~~~~~~~~~~~~~~~~~dg~i~iw 154 (303)
.|.+++..+. .++.+...+.+|+|
T Consensus 3 ~i~aia~g~~----~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDS----WVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCC----EEEEEeCCCeEEec
Confidence 4677777653 57788888999987
No 489
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=46.49 E-value=1.7e+02 Score=24.32 Aligned_cols=56 Identities=11% Similarity=0.190 Sum_probs=37.2
Q ss_pred eEEEEeCCCCceEEEec-------CCCeEEEEEEcCCC-----eEEEEE--cCCcEEEEeCCCCceeeee
Q 048118 192 VILLWDLAEGKRLYSLD-------AGAVIHALCFSPNR-----YWLCAA--TEQSIKIWDLESKSIVEDL 247 (303)
Q Consensus 192 ~v~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~~-----~~l~~~--~~~~i~iwd~~~~~~~~~~ 247 (303)
+|.+||+.+.+.++++. ..+....+.+.... .++..+ ..+.|-+||+++++.-+.+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVL 104 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEe
Confidence 67788999888777653 23567777776521 333333 3568999999988765443
No 490
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=46.05 E-value=1.5e+02 Score=24.18 Aligned_cols=57 Identities=9% Similarity=-0.022 Sum_probs=36.4
Q ss_pred CEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEE---ECCCCCEEEEEeCCCeEEEE
Q 048118 140 PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVA---VSPDGSLCASGGKDGVILLW 196 (303)
Q Consensus 140 ~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~---~~~~~~~l~~~~~d~~v~iw 196 (303)
..++.|+.+|.|.+.|-+......++.-..-++.-.+ |..-.-.++++++||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 4688999999999999887776666554333332111 11112246677788887653
No 491
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=45.75 E-value=1.6e+02 Score=23.83 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=28.8
Q ss_pred EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-C--CeEEEEeCC
Q 048118 152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-D--GVILLWDLA 199 (303)
Q Consensus 152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~v~iwd~~ 199 (303)
.+||+.+++.........--+.+-.+-|+|+++.+|+. + ..+++++.-
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~ 99 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPC 99 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecC
Confidence 46888776654322212223344457789999999875 3 357777754
No 492
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=45.06 E-value=6.8 Score=34.66 Aligned_cols=140 Identities=16% Similarity=0.249 Sum_probs=81.2
Q ss_pred ecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE-EEEEe
Q 048118 22 ATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ-IVSAS 100 (303)
Q Consensus 22 ~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~-l~t~~ 100 (303)
.|.|++.+ ++.+..+..+..||-+..- + +..+ .++.-..++|..++.. ++.+-
T Consensus 41 ~w~~e~~n-lavaca~tiv~~YD~agq~--~----------------le~n-------~tg~aldm~wDkegdvlavlAe 94 (615)
T KOG2247|consen 41 RWRPEGHN-LAVACANTIVIYYDKAGQV--I----------------LELN-------PTGKALDMAWDKEGDVLAVLAE 94 (615)
T ss_pred eEecCCCc-eehhhhhhHHHhhhhhcce--e----------------cccC-------CchhHhhhhhccccchhhhhhh
Confidence 46677666 5556666788888754311 0 0001 1223346788877654 33445
Q ss_pred CCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCC
Q 048118 101 RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD 180 (303)
Q Consensus 101 ~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 180 (303)
..+.+-+|++..+...+......+.... +.|++.. +.++.+...|.+++|...+-...-..-.|..+++++++.+.
T Consensus 95 k~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~--~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 95 KTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGT--PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred cCCCeeechhhhhhHHHHhccCcchHHH--HhhccCC--ccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 5678999998654332222222222222 5576654 45677778899999987654433333337888999999887
Q ss_pred CCEEEEEeCCCe
Q 048118 181 GSLCASGGKDGV 192 (303)
Q Consensus 181 ~~~l~~~~~d~~ 192 (303)
+..+ .++.|..
T Consensus 171 d~vi-l~dcd~~ 181 (615)
T KOG2247|consen 171 DYVI-LCDCDNT 181 (615)
T ss_pred ceee-ecCcHHH
Confidence 6544 3444443
No 493
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.04 E-value=1.2e+02 Score=29.11 Aligned_cols=77 Identities=10% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC-CcEEEEeCCCCceeeeee
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLK 248 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iwd~~~~~~~~~~~ 248 (303)
..+..+.+++-.+.+++++..|.+--.++++|+.++.-.....-... . .......+.| ..++.||...|.+..++.
T Consensus 36 ~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~-~--~~~~~~iS~dg~~lr~wn~~~g~l~~~i~ 112 (910)
T KOG2103|consen 36 KKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGL-G--VPLTNTISVDGRYLRSWNTNNGILDWEIE 112 (910)
T ss_pred eeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCccc-C--cceeEEEccCCcEEEeecCCCceeeeecc
Confidence 35667778887788888888998888889998877654222111110 0 0111123333 458888888876655544
Q ss_pred e
Q 048118 249 V 249 (303)
Q Consensus 249 ~ 249 (303)
.
T Consensus 113 l 113 (910)
T KOG2103|consen 113 L 113 (910)
T ss_pred c
Confidence 3
No 494
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=42.73 E-value=2.1e+02 Score=24.26 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCeeEEEECCCCCEEEEEeCCCe------EEEEeCCC----------CceEEEecCCCeEE--------EEEEcCCCeEE
Q 048118 170 GYVNTVAVSPDGSLCASGGKDGV------ILLWDLAE----------GKRLYSLDAGAVIH--------ALCFSPNRYWL 225 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~~d~~------v~iwd~~~----------~~~~~~~~~~~~v~--------~~~~s~~~~~l 225 (303)
+.+..+.+.|++..+++.+.+|. +...++.. ...+.......... ++++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Q ss_pred EEEc-C------CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118 226 CAAT-E------QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293 (303)
Q Consensus 226 ~~~~-~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg 293 (303)
++.. + ..|+-++.+ ++.+..+.+........... .-...+...-+|+++|+|+.|.++-+..
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~-----~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGT-----SGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCcc-----ccccCCCCeEEEEECCCCCEEEEEECcc
No 495
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.92 E-value=1.9e+02 Score=23.46 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=50.2
Q ss_pred CeeEEEECCCCCEE-EEEeCCCeEEEEe--CCCCc-----eEEEecC----CCe-EEEEEEcCCCe-EEEEEcCCcEEEE
Q 048118 171 YVNTVAVSPDGSLC-ASGGKDGVILLWD--LAEGK-----RLYSLDA----GAV-IHALCFSPNRY-WLCAATEQSIKIW 236 (303)
Q Consensus 171 ~i~~~~~~~~~~~l-~~~~~d~~v~iwd--~~~~~-----~~~~~~~----~~~-v~~~~~s~~~~-~l~~~~~~~i~iw 236 (303)
.-+.++|+.+.+.+ .+-+.+-.|.-|| ..+|. .+..+.. ... .-.++...+|. ++++-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 34568888877755 5566788887787 55553 2222211 111 11233344554 5566678899999
Q ss_pred eCCCCceeeeeeec
Q 048118 237 DLESKSIVEDLKVD 250 (303)
Q Consensus 237 d~~~~~~~~~~~~~ 250 (303)
|..+++++.++++.
T Consensus 239 dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 239 DPTTGKILLEIKLP 252 (310)
T ss_pred CCCCCcEEEEEEcC
Confidence 99999999888764
No 496
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=39.33 E-value=1.6e+02 Score=24.14 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=43.0
Q ss_pred CCCeeEEEEC------CCC-CEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEE----EEEc-CCCeEEEEEcCCcEEEE
Q 048118 169 TGYVNTVAVS------PDG-SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHA----LCFS-PNRYWLCAATEQSIKIW 236 (303)
Q Consensus 169 ~~~i~~~~~~------~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~----~~~s-~~~~~l~~~~~~~i~iw 236 (303)
...|++++-- ++. ..|+.|.++|.|.|.|-+..+.+.++...+.... =.|. -|..+++++-||.|++.
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 3456776531 112 3688999999999999887777766654332111 1233 34566677778888763
No 497
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=39.12 E-value=4.3e+02 Score=27.09 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=61.0
Q ss_pred cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118 12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI 91 (303)
Q Consensus 12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~ 91 (303)
+..++.|..++-- .++|++|. ...|.+|++.......++. +-. -+++-.+..-
T Consensus 1094 eE~KGtVsavceV---~G~l~~~~-GqKI~v~~l~r~~~ligVa---------------FiD--------~~~yv~s~~~ 1146 (1366)
T KOG1896|consen 1094 EEQKGTVSAVCEV---RGHLLSSQ-GQKIIVRKLDRDSELIGVA---------------FID--------LPLYVHSMKV 1146 (1366)
T ss_pred hhcccceEEEEEe---ccEEEEcc-CcEEEEEEeccCCcceeeE---------------Eec--------cceeEEehhh
Confidence 3445667776632 24566654 4689999885443222211 100 0111111122
Q ss_pred CCCEEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118 92 DNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156 (303)
Q Consensus 92 ~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~ 156 (303)
-+.+++.|..-+.|.+.....+.. ......+...-.+.++.|--++....++++..++.|++|--
T Consensus 1147 vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1147 VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 234555565555666544332221 11222222334467777776776678899999999998753
No 498
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=38.83 E-value=1.5e+02 Score=21.50 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=26.9
Q ss_pred CCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCc----eEEEecCCCeEEEEEEcCC
Q 048118 170 GYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGK----RLYSLDAGAVIHALCFSPN 221 (303)
Q Consensus 170 ~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~s~~ 221 (303)
..+.-.-+.++...|..++ .|++|+.+++...+ .+..+........++|-|.
T Consensus 11 ~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 11 SGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred CceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 4555667888888776655 58999999997663 2333445566677777774
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=38.09 E-value=2.4e+02 Score=23.50 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=44.4
Q ss_pred cCCEEEEEEeeCCCEEEEEe------CCCcEEEEecCCceeeeeecC--CCCccceEEEEEcCCCCCCEEEEEe-CC--C
Q 048118 81 TKDVLSVAFSIDNRQIVSAS------RDRTIKLWNTLGECKYTIQEG--DAHTEWVSCVRFSPNTLQPTIVSAS-WD--R 149 (303)
Q Consensus 81 ~~~i~~i~~~~~~~~l~t~~------~d~~i~vw~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~-~d--g 149 (303)
.+.|..+.|..+.++++.|. ....+-.||..+.....+... ..-..++..+.+.........+.|. .+ .
T Consensus 36 ~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~ 115 (281)
T PF12768_consen 36 SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGST 115 (281)
T ss_pred eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCc
Confidence 46788999987777777664 345677788765543233221 1123567777765444333444443 23 3
Q ss_pred cEEEEECCCce
Q 048118 150 TVKVWNLSNCK 160 (303)
Q Consensus 150 ~i~iwd~~~~~ 160 (303)
.|..||-.+..
T Consensus 116 ~l~~~dGs~W~ 126 (281)
T PF12768_consen 116 FLMKYDGSSWS 126 (281)
T ss_pred eEEEEcCCceE
Confidence 46667654433
No 500
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=34.68 E-value=2.8e+02 Score=23.44 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=63.1
Q ss_pred EEEEEcCCCCCCEEEEEeCCCcEEEEECC-------CceeEEEEcC-----CCCCeeEEEECCCC------------CEE
Q 048118 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLS-------NCKLRATLAG-----HTGYVNTVAVSPDG------------SLC 184 (303)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-------~~~~~~~~~~-----~~~~i~~~~~~~~~------------~~l 184 (303)
..++++|.+ ...++....+...+||.. ..+++.++.. .....+.+.|+... ..+
T Consensus 26 WGia~~p~~--~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 26 WGLSYRPGG--PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ceeEecCCC--CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 568888865 467777777889999986 2233444432 12345666665322 236
Q ss_pred EEEeCCCeEEEEeCCCCce-----EEEecC--CCeE-EEEEEcCC--CeEEEE--EcCCcEEEEeCCCC
Q 048118 185 ASGGKDGVILLWDLAEGKR-----LYSLDA--GAVI-HALCFSPN--RYWLCA--ATEQSIKIWDLESK 241 (303)
Q Consensus 185 ~~~~~d~~v~iwd~~~~~~-----~~~~~~--~~~v-~~~~~s~~--~~~l~~--~~~~~i~iwd~~~~ 241 (303)
+.+++||+|.-|...-+.. ...++. ...| ..+++-.. +..|.+ -.+++|.+||-.-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 8889999999998532211 122221 1222 34555432 333333 34788999986433
Done!