Query 048119
Match_columns 266
No_of_seqs 170 out of 1700
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 10:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 1E-29 3.6E-34 220.5 23.4 220 29-258 6-252 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 5E-29 1.7E-33 216.8 19.5 222 29-258 7-260 (507)
3 2hi4_A Cytochrome P450 1A2; CY 100.0 1.6E-27 5.3E-32 207.0 23.5 220 30-257 15-266 (495)
4 3s79_A Cytochrome P450 19A1; o 100.0 1E-27 3.6E-32 208.3 20.7 214 29-259 43-287 (503)
5 3nxu_A Cytochrome P450 3A4; al 100.0 4.7E-29 1.6E-33 215.9 11.5 150 29-186 12-174 (485)
6 3qz1_A Steroid 21-hydroxylase; 100.0 8.9E-29 3E-33 214.7 12.4 218 28-259 26-264 (496)
7 3e6i_A CYPIIE1, P450-J, cytoch 100.0 4.4E-27 1.5E-31 203.0 21.7 218 29-259 8-253 (476)
8 3k9v_A 1,25-dihydroxyvitamin D 100.0 2.3E-27 8E-32 205.0 19.0 220 27-258 20-277 (482)
9 2fdv_A Cytochrome P450 2A6; CY 100.0 7.4E-27 2.5E-31 201.8 21.1 217 30-258 9-253 (476)
10 1po5_A Cytochrome P450 2B4; ox 100.0 1.6E-26 5.5E-31 199.7 22.1 215 30-257 9-252 (476)
11 3czh_A Cytochrome P450 2R1; vi 100.0 1.2E-26 4.1E-31 200.8 21.1 219 29-258 10-258 (481)
12 3gw9_A Sterol 14alpha-demethyl 100.0 2.2E-27 7.7E-32 203.4 16.0 219 30-261 2-245 (450)
13 1r9o_A Cytochrome P450 2C9; mo 99.9 4.3E-26 1.5E-30 197.0 22.2 215 30-257 10-253 (477)
14 3ld6_A Lanosterol 14-alpha dem 99.9 9.7E-27 3.3E-31 200.3 13.8 218 30-263 10-246 (461)
15 3tbg_A Cytochrome P450 2D6; mo 99.9 1.8E-25 6.1E-30 193.1 20.5 217 29-257 8-256 (479)
16 3n9y_A Cholesterol SIDE-chain 99.9 3.2E-25 1.1E-29 192.0 19.8 151 27-186 5-182 (487)
17 2ij2_A Cytochrome P450 BM3; mo 99.9 8.3E-25 2.8E-29 188.7 20.5 216 31-259 3-242 (470)
18 3i3k_A Lanosterol 14-alpha dem 99.9 2.2E-25 7.5E-30 191.8 13.7 218 28-261 8-244 (461)
19 2ve3_A Putative cytochrome P45 99.9 1.9E-24 6.6E-29 185.1 19.2 209 29-260 10-234 (444)
20 3dbg_A Putative cytochrome P45 99.9 6.8E-25 2.3E-29 189.0 12.1 212 30-260 22-254 (467)
21 2cib_A Cytochrome P450 51; hem 99.9 1.3E-23 4.5E-28 180.4 13.9 211 31-260 4-235 (455)
22 3mdm_A Cholesterol 24-hydroxyl 99.9 2.7E-22 9.3E-27 172.2 21.8 204 42-258 8-235 (456)
23 2cd8_A Cytochrome P450 monooxy 99.9 1.1E-21 3.8E-26 167.5 17.7 195 30-259 25-242 (436)
24 3v8d_A Cholesterol 7-alpha-mon 99.9 4.6E-23 1.6E-27 178.7 8.9 218 28-259 10-248 (491)
25 1jfb_A Nitric-oxide reductase 99.9 4E-20 1.4E-24 156.4 19.7 198 32-258 2-219 (404)
26 1izo_A P450bsbeta, cytochrome 99.9 1E-19 3.4E-24 154.6 22.1 193 39-260 8-223 (417)
27 1n97_A CYP175A1; electron tran 99.8 4.3E-21 1.5E-25 161.6 11.2 184 35-243 3-200 (389)
28 3awm_A Fatty acid alpha-hydrox 99.8 2.2E-19 7.5E-24 152.4 20.9 196 33-260 4-222 (415)
29 3dax_A Cytochrome P450 7A1; ch 99.8 7.8E-21 2.7E-25 164.5 9.9 217 29-258 11-247 (491)
30 3b6h_A Prostacyclin synthase; 99.8 4.1E-19 1.4E-23 154.1 17.7 218 29-259 16-254 (498)
31 1cpt_A Cytochrome P450-TERP; o 99.8 1E-18 3.4E-23 148.9 15.5 207 29-259 4-247 (428)
32 1ued_A P450 OXYC, P450 monooxy 99.8 1.9E-18 6.4E-23 146.3 16.9 194 29-258 8-226 (406)
33 2zbx_A Cytochrome P450-SU1; be 99.8 5.7E-18 1.9E-22 143.6 19.9 193 31-259 5-224 (412)
34 3b98_A Prostaglandin I2 syntha 99.8 7.2E-19 2.5E-23 151.6 13.7 209 30-259 17-245 (475)
35 1s1f_A Putative cytochrome P45 99.8 7E-18 2.4E-22 142.7 17.2 193 31-258 8-222 (406)
36 2jjn_A Cytochrome P450 113A1; 99.8 4.5E-18 1.5E-22 144.1 15.5 194 29-259 17-221 (411)
37 3tyw_A Putative cytochrome P45 99.8 3.1E-17 1E-21 139.3 19.1 179 47-260 32-230 (417)
38 3oo3_A OXY protein; cytochrome 99.8 3.2E-17 1.1E-21 137.7 19.0 177 47-257 15-206 (384)
39 3aba_A Cytochrome P450; oxidor 99.8 4.5E-17 1.5E-21 137.6 18.3 178 47-259 22-217 (403)
40 2wm5_A CYP124, putative cytoch 99.7 9.9E-17 3.4E-21 136.8 19.3 186 47-259 47-254 (435)
41 3tkt_A Cytochrome P450; aromat 99.7 5.8E-17 2E-21 138.9 17.7 192 48-259 49-269 (450)
42 3abb_A CYP105D6, cytochrome P4 99.7 4.8E-17 1.7E-21 137.7 16.8 177 47-259 27-223 (408)
43 2zwu_A Camphor 5-monooxygenase 99.7 6.4E-17 2.2E-21 137.2 16.7 195 27-258 7-228 (415)
44 3dsk_A Cytochrome P450 74A, ch 99.7 1.2E-17 4.2E-22 144.7 11.4 151 28-186 25-206 (495)
45 3ivy_A Cytochrome P450 CYP125; 99.7 3E-16 1E-20 133.8 19.6 198 30-259 17-248 (433)
46 3ejb_B Biotin biosynthesis cyt 99.7 1.4E-16 4.7E-21 134.7 17.3 180 47-255 16-211 (404)
47 1odo_A Putative cytochrome P45 99.7 6.1E-17 2.1E-21 137.1 14.7 180 47-259 18-219 (408)
48 2z3t_A Cytochrome P450; monoxy 99.7 3.1E-16 1.1E-20 133.4 17.2 184 47-259 23-234 (425)
49 4fb2_A P450CIN; heme, monooxyg 99.7 1.3E-16 4.6E-21 134.5 14.7 177 47-259 22-212 (398)
50 2y5n_A MYCG, P-450-like protei 99.7 2.9E-16 9.8E-21 133.3 16.3 179 47-259 40-234 (417)
51 3a4g_A Vitamin D hydroxylase; 99.7 2.4E-16 8.2E-21 133.5 15.6 176 47-259 23-215 (411)
52 2z36_A MOXA, cytochrome P450 t 99.7 3E-16 1E-20 133.0 16.1 177 47-258 25-224 (413)
53 1z8o_A 6-deoxyerythronolide B 99.7 3.2E-16 1.1E-20 132.4 15.3 176 47-257 17-218 (404)
54 2xkr_A CYP142, putative cytoch 99.7 6.5E-16 2.2E-20 130.3 16.5 181 47-259 21-210 (398)
55 3dan_A Cytochrome P450 74A2; A 99.7 1.8E-16 6.3E-21 136.5 12.3 156 29-186 7-188 (473)
56 1q5d_A P450 epoxidase; cytochr 99.7 2.4E-16 8.4E-21 133.8 12.7 183 47-258 29-233 (419)
57 1gwi_A CYP154C1, cytochrome P4 99.7 7.5E-16 2.6E-20 130.5 15.4 178 47-259 20-222 (411)
58 2dkk_A Cytochrome P450; CYP158 99.7 6.8E-16 2.3E-20 130.7 14.8 177 47-257 30-224 (411)
59 3r9b_A Cytochrome P450 164A2; 99.7 1.1E-15 3.7E-20 129.8 15.9 184 47-258 32-235 (418)
60 2xbk_A PIMD protein; epoxidati 99.7 2.7E-15 9.2E-20 126.7 17.7 172 47-254 29-221 (404)
61 3lxh_A Cytochrome P450; heme, 99.7 1.8E-15 6E-20 128.6 15.8 183 47-259 41-236 (421)
62 3buj_A CALO2; heme, iron, meta 99.7 1.8E-15 6.1E-20 127.6 14.4 179 47-258 16-213 (397)
63 1lfk_A OXYB, P450 monooxygenas 99.6 5E-15 1.7E-19 124.9 16.1 174 51-258 20-217 (398)
64 2uuq_A CYP130, cytochrome P450 99.6 1.3E-14 4.5E-19 122.9 18.0 178 47-259 28-228 (414)
65 3nc3_A Cytochrome P450 CYPX; c 99.6 1.4E-15 4.9E-20 129.9 11.1 183 47-259 56-249 (441)
66 1n40_A P450 MT2, cytochrome P4 99.6 2.8E-15 9.6E-20 126.3 11.0 174 47-258 19-210 (396)
67 3oft_A Cytochrome P450, CYP101 99.6 1.5E-14 5.2E-19 121.8 15.5 176 47-259 27-214 (396)
68 3rwl_A Cytochrome P450 alkane 99.6 3.3E-13 1.1E-17 114.8 19.2 183 47-259 41-246 (426)
69 2rfb_A Cytochrome P450; heme, 99.6 2.6E-14 8.7E-19 118.2 12.0 159 55-258 2-167 (343)
70 3mgx_A Putative P450 monooxyge 99.6 3.1E-14 1.1E-18 120.7 12.7 179 47-258 40-237 (415)
71 1io7_A Cytochrome P450 CYP119; 99.5 4.3E-14 1.5E-18 117.9 12.1 170 48-257 3-192 (368)
72 3b4x_A 367AA long hypothetical 99.5 9.7E-14 3.3E-18 115.7 14.2 169 48-257 3-193 (367)
73 2wiy_A XPLA-heme, cytochrome P 99.5 6E-13 2E-17 112.0 15.7 180 47-258 23-213 (394)
74 3p3o_A Cytochrome P450; monoox 99.5 2.3E-14 7.9E-19 121.5 6.4 179 52-259 39-234 (416)
75 4dnj_A Putative cytochrome P45 99.4 3.2E-11 1.1E-15 102.0 16.4 131 37-183 18-171 (412)
76 4dxy_A Cytochrome P450, CYP101 99.2 1.2E-09 4E-14 92.5 17.8 185 47-260 40-236 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 97.8 9.6E-08 3.3E-12 79.6 -8.9 119 32-185 35-181 (381)
78 3lqv_A PRE-mRNA branch site pr 80.2 8.7 0.0003 25.0 7.2 54 32-91 3-66 (115)
79 1iqt_A AUF1, heterogeneous nuc 71.6 9.3 0.00032 22.5 5.0 51 42-92 4-61 (75)
80 1s79_A Lupus LA protein; RRM, 70.9 12 0.00042 24.0 5.7 46 40-91 14-71 (103)
81 3d2w_A TAR DNA-binding protein 69.9 11 0.00039 23.3 5.3 50 33-88 7-64 (89)
82 2wbr_A GW182, gawky, LD47780P; 67.1 17 0.00058 22.9 5.4 48 37-90 7-61 (89)
83 2diu_A KIAA0430 protein; struc 64.1 25 0.00087 22.4 6.3 44 41-91 13-65 (96)
84 2mss_A Protein (musashi1); RNA 60.6 22 0.00075 20.8 5.1 49 42-90 4-59 (75)
85 2cqc_A Arginine/serine-rich sp 58.3 30 0.001 21.3 6.1 58 34-91 12-76 (95)
86 1sjq_A Polypyrimidine tract-bi 55.3 40 0.0014 21.8 6.1 52 34-91 13-71 (105)
87 1x4c_A Splicing factor, argini 54.3 39 0.0013 21.5 7.0 46 40-91 18-69 (108)
88 1sjr_A Polypyrimidine tract-bi 53.7 47 0.0016 23.6 6.5 50 41-91 50-103 (164)
89 1x4e_A RNA binding motif, sing 52.9 24 0.00081 21.3 4.4 55 36-90 4-65 (85)
90 3s7r_A Heterogeneous nuclear r 49.8 31 0.0011 20.8 4.7 55 38-92 12-73 (87)
91 3beg_B Splicing factor, argini 49.6 39 0.0013 21.9 5.3 46 40-91 19-70 (115)
92 2dhg_A TRNA selenocysteine ass 49.3 46 0.0016 20.8 6.9 52 34-91 6-70 (104)
93 3s8s_A Histone-lysine N-methyl 48.8 43 0.0015 21.6 5.4 51 39-91 8-67 (110)
94 4fxv_A ELAV-like protein 1; RN 48.0 49 0.0017 20.8 5.5 52 40-91 22-80 (99)
95 2jvr_A Nucleolar protein 3; RN 47.8 48 0.0016 21.6 5.5 47 39-91 30-86 (111)
96 2dnq_A RNA-binding protein 4B; 47.8 45 0.0015 20.3 5.9 49 38-91 9-61 (90)
97 2kxn_B Transformer-2 protein h 47.7 59 0.002 21.6 7.6 57 35-91 44-107 (129)
98 1whx_A Hypothetical protein ri 46.9 55 0.0019 21.0 6.2 48 41-91 14-65 (111)
99 2la6_A RNA-binding protein FUS 46.6 50 0.0017 20.5 6.6 58 34-91 10-82 (99)
100 3ex7_B RNA-binding protein 8A; 46.4 59 0.002 21.3 6.1 52 40-91 25-83 (126)
101 3zzy_A Polypyrimidine tract-bi 46.4 42 0.0015 22.7 5.1 51 40-91 31-85 (130)
102 2ad9_A Polypyrimidine tract-bi 46.2 57 0.0019 21.6 5.6 49 36-90 30-85 (119)
103 2dnz_A Probable RNA-binding pr 45.7 50 0.0017 20.2 6.9 54 38-91 6-66 (95)
104 2jrs_A RNA-binding protein 39; 45.5 56 0.0019 20.9 5.5 52 40-91 29-87 (108)
105 2d9p_A Polyadenylate-binding p 45.1 54 0.0019 20.5 5.7 58 34-91 12-74 (103)
106 4f25_A Polyadenylate-binding p 44.8 54 0.0018 21.2 5.4 52 40-91 8-64 (115)
107 3mdf_A Peptidyl-prolyl CIS-tra 44.2 49 0.0017 19.7 6.6 55 37-91 7-68 (85)
108 3bs9_A Nucleolysin TIA-1 isofo 43.5 49 0.0017 19.8 4.9 52 40-91 9-67 (87)
109 2hvz_A Splicing factor, argini 43.4 58 0.002 20.3 5.4 44 42-91 5-56 (101)
110 1p27_B RNA-binding protein 8A; 43.0 60 0.0021 20.4 6.4 46 40-91 26-84 (106)
111 2do4_A Squamous cell carcinoma 42.9 58 0.002 20.2 6.7 55 37-91 17-77 (100)
112 2e5h_A Zinc finger CCHC-type a 42.1 57 0.002 19.9 6.7 56 36-91 15-77 (94)
113 2dgv_A HnRNP M, heterogeneous 41.6 58 0.002 19.7 6.9 47 39-91 10-67 (92)
114 2krb_A Eukaryotic translation 41.2 55 0.0019 19.4 6.4 38 48-91 22-66 (81)
115 1wi8_A EIF-4B, eukaryotic tran 41.1 65 0.0022 20.2 5.4 57 33-90 11-75 (104)
116 2dh8_A DAZ-associated protein 41.0 65 0.0022 20.2 5.7 56 38-93 17-79 (105)
117 1rk8_A CG8781-PA, CG8781-PA pr 40.7 76 0.0026 22.1 6.0 46 40-91 75-133 (165)
118 2jwn_A Embryonic polyadenylate 40.5 48 0.0017 21.6 4.7 50 41-90 40-96 (124)
119 2ywk_A Putative RNA-binding pr 40.3 62 0.0021 19.7 5.2 53 39-91 18-76 (95)
120 1oo0_B CG8781-PA, drosophila Y 40.3 69 0.0024 20.3 6.3 52 40-91 29-87 (110)
121 2dnp_A RNA-binding protein 14; 39.9 62 0.0021 19.6 7.3 51 36-91 8-62 (90)
122 3ulh_A THO complex subunit 4; 39.3 70 0.0024 20.1 5.6 52 40-91 32-89 (107)
123 2jvo_A Nucleolar protein 3; nu 39.3 73 0.0025 20.3 5.3 46 40-91 34-84 (108)
124 2cq3_A RNA-binding protein 9; 39.0 70 0.0024 19.9 7.1 49 37-91 15-74 (103)
125 2dgs_A DAZ-associated protein 38.9 68 0.0023 19.8 7.0 59 38-96 11-76 (99)
126 2cq1_A PTB-like protein L; RRM 38.7 71 0.0024 20.2 5.1 47 38-90 16-69 (101)
127 3md1_A Nuclear and cytoplasmic 38.4 61 0.0021 19.1 5.2 50 42-91 6-62 (83)
128 3ucg_A Polyadenylate-binding p 38.1 64 0.0022 19.3 5.1 50 41-90 10-66 (89)
129 2x1f_A MRNA 3'-END-processing 38.1 69 0.0024 19.6 6.1 51 41-91 6-63 (96)
130 1whw_A Hypothetical protein ri 38.0 70 0.0024 19.7 6.2 53 39-91 10-69 (99)
131 2dgt_A RNA-binding protein 30; 37.9 68 0.0023 19.5 6.1 48 39-91 12-63 (92)
132 2dgx_A KIAA0430 protein; RRM d 37.5 72 0.0025 19.7 5.9 52 40-91 12-71 (96)
133 2cq4_A RNA binding motif prote 37.4 55 0.0019 21.0 4.5 50 41-90 29-85 (114)
134 2rs2_A Musashi-1, RNA-binding 37.4 78 0.0027 20.2 5.2 55 38-92 26-87 (109)
135 2cpf_A RNA binding motif prote 36.7 74 0.0025 19.5 6.4 53 39-91 7-69 (98)
136 4a8x_A RNA-binding protein wit 35.9 70 0.0024 19.1 6.3 51 41-91 8-66 (88)
137 1nu4_A U1A RNA binding domain; 35.9 75 0.0026 19.4 6.2 47 39-91 10-70 (97)
138 1x4h_A RNA-binding protein 28; 35.7 83 0.0028 19.8 7.9 56 36-91 14-76 (111)
139 2div_A TRNA selenocysteine ass 35.6 77 0.0026 19.5 5.4 56 36-91 8-71 (99)
140 2voo_A Lupus LA protein; RNA-b 35.5 61 0.0021 23.5 4.9 47 41-93 113-171 (193)
141 1x4b_A Heterogeneous nuclear r 34.7 51 0.0017 21.2 4.0 52 40-91 30-88 (116)
142 4f02_A Polyadenylate-binding p 34.5 75 0.0026 23.1 5.4 55 36-92 14-77 (213)
143 1x5u_A Splicing factor 3B subu 34.4 84 0.0029 19.6 7.4 53 39-91 17-76 (105)
144 2cpi_A CCR4-NOT transcription 34.3 34 0.0012 22.0 3.0 59 38-96 16-88 (111)
145 2fy1_A RNA-binding motif prote 34.0 80 0.0027 20.4 4.9 53 39-91 9-67 (116)
146 1uaw_A Mouse-musashi-1; RNP-ty 33.8 51 0.0017 19.1 3.6 51 42-92 5-62 (77)
147 1p1t_A Cleavage stimulation fa 33.7 79 0.0027 19.6 4.8 52 40-91 11-69 (104)
148 2cqd_A RNA-binding region cont 33.7 94 0.0032 19.9 5.3 55 39-93 19-80 (116)
149 1whv_A Poly(A)-specific ribonu 33.5 96 0.0033 19.9 5.4 39 47-90 29-67 (100)
150 3s6e_A RNA-binding protein 39; 33.4 99 0.0034 20.2 5.2 53 33-91 3-74 (114)
151 2dnm_A SRP46 splicing factor; 32.7 90 0.0031 19.4 6.5 53 39-91 15-74 (103)
152 1l3k_A Heterogeneous nuclear r 32.6 90 0.0031 22.0 5.5 55 39-93 15-76 (196)
153 3n9u_C Cleavage and polyadenyl 32.3 1.2E+02 0.0041 21.0 5.8 49 41-91 59-118 (156)
154 2cqi_A Nucleolysin TIAR; RNA r 32.2 92 0.0031 19.3 5.8 53 38-90 16-73 (103)
155 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.9 1.1E+02 0.0038 20.2 7.3 52 40-91 66-124 (140)
156 3r27_A HnRNP L, heterogeneous 31.7 1E+02 0.0035 19.7 6.4 50 36-91 20-76 (100)
157 1wg5_A Heterogeneous nuclear r 31.7 97 0.0033 19.4 6.2 50 38-93 16-78 (104)
158 1wex_A Hypothetical protein (r 31.7 1E+02 0.0034 19.6 6.0 48 37-90 15-69 (104)
159 2dnh_A Bruno-like 5, RNA bindi 30.9 98 0.0034 19.2 6.6 54 38-91 16-75 (105)
160 2cqb_A Peptidyl-prolyl CIS-tra 30.7 97 0.0033 19.1 5.7 56 36-91 11-73 (102)
161 2cpj_A Non-POU domain-containi 30.4 97 0.0033 19.1 4.8 47 39-91 17-70 (99)
162 2ytc_A PRE-mRNA-splicing facto 30.2 88 0.003 18.5 7.1 48 38-91 13-67 (85)
163 2bz2_A Negative elongation fac 30.1 1.1E+02 0.0039 19.9 5.2 47 39-91 41-92 (121)
164 2qfj_A FBP-interacting repress 29.8 1.5E+02 0.0052 21.1 6.8 51 41-91 32-89 (216)
165 3md3_A Nuclear and cytoplasmic 28.6 1.1E+02 0.0037 20.7 5.2 44 42-91 5-60 (166)
166 2cpz_A CUG triplet repeat RNA- 28.4 1.2E+02 0.004 19.3 6.0 54 38-91 26-86 (115)
167 2err_A Ataxin-2-binding protei 27.9 1E+02 0.0035 19.5 4.6 46 40-91 32-88 (109)
168 2dis_A Unnamed protein product 27.8 1.2E+02 0.0039 19.1 5.9 52 40-91 11-71 (109)
169 2cq0_A Eukaryotic translation 27.6 49 0.0017 20.7 2.9 53 39-91 17-76 (103)
170 1wf0_A TDP-43, TAR DNA-binding 27.5 58 0.002 19.6 3.2 44 40-89 8-59 (88)
171 2f3j_A RNA and export factor b 26.9 1.7E+02 0.0057 20.7 5.9 45 41-91 92-148 (177)
172 2cjk_A Nuclear polyadenylated 26.7 1.1E+02 0.0038 20.7 5.0 51 40-90 90-147 (167)
173 1x4g_A Nucleolysin TIAR; struc 26.7 1.2E+02 0.0042 19.0 6.3 47 39-91 27-80 (109)
174 2cph_A RNA binding motif prote 26.0 1.2E+02 0.0042 18.8 8.6 54 38-91 16-77 (107)
175 2e5i_A Heterogeneous nuclear r 26.0 1.5E+02 0.005 19.7 5.1 47 42-91 30-81 (124)
176 1l3k_A Heterogeneous nuclear r 25.7 1E+02 0.0036 21.6 4.8 54 40-93 107-167 (196)
177 1x5p_A Negative elongation fac 25.6 1.2E+02 0.0041 18.5 6.4 48 38-91 16-68 (97)
178 2lea_A Serine/arginine-rich sp 25.4 1.5E+02 0.0052 19.7 5.9 53 39-91 49-108 (135)
179 1fxl_A Paraneoplastic encephal 25.2 1.5E+02 0.0052 19.9 5.5 51 41-91 6-63 (167)
180 2nlw_A Eukaryotic translation 25.1 1.3E+02 0.0045 18.8 6.4 47 39-91 17-80 (105)
181 1r5q_A KAI A, circadian oscill 25.1 1.3E+02 0.0046 18.9 4.3 62 112-177 30-92 (102)
182 1x4d_A Matrin 3; structural ge 25.1 1.4E+02 0.0047 19.0 5.4 54 34-90 12-70 (102)
183 3p5t_L Cleavage and polyadenyl 24.6 1.1E+02 0.0038 18.4 4.1 51 41-91 5-64 (90)
184 2cpd_A Apobec-1 stimulating pr 24.5 1.3E+02 0.0044 18.5 6.1 48 39-91 17-70 (99)
185 3nmr_A Cugbp ELAV-like family 24.5 1.6E+02 0.0054 20.1 5.5 52 40-91 98-155 (175)
186 2xs2_A Deleted in azoospermia- 24.4 54 0.0018 20.5 2.6 45 40-90 12-68 (102)
187 2dgo_A Cytotoxic granule-assoc 24.2 1.4E+02 0.0048 18.9 6.2 54 38-91 16-76 (115)
188 2la4_A Nuclear and cytoplasmic 24.1 1.3E+02 0.0045 18.5 5.7 46 40-91 30-82 (101)
189 2j76_E EIF-4B, EIF4B, eukaryot 24.0 1.3E+02 0.0045 18.6 4.5 49 41-90 23-79 (100)
190 2kn4_A Immunoglobulin G-bindin 23.8 1.7E+02 0.0059 19.8 7.2 54 38-91 71-131 (158)
191 3ns6_A Eukaryotic translation 23.7 1.4E+02 0.0047 18.5 6.2 39 47-91 26-73 (100)
192 3pgw_S U1-70K; protein-RNA com 23.7 1.6E+02 0.0054 24.5 6.0 48 38-91 103-163 (437)
193 1u6f_A Tcubp1, RNA-binding pro 23.4 1.6E+02 0.0056 19.4 6.3 52 40-91 45-103 (139)
194 1x5t_A Splicing factor 3B subu 23.2 1.2E+02 0.004 18.4 4.1 52 40-91 8-67 (96)
195 2cq2_A Hypothetical protein LO 23.2 1.6E+02 0.0056 19.2 6.7 53 36-91 24-82 (114)
196 1x4a_A Splicing factor, argini 22.6 1.5E+02 0.0051 18.6 7.1 53 39-91 24-80 (109)
197 2dng_A Eukaryotic translation 22.6 1.4E+02 0.0049 18.4 4.5 58 32-90 10-74 (103)
198 2ghp_A U4/U6 snRNA-associated 22.6 1.3E+02 0.0046 22.9 5.1 54 38-97 42-106 (292)
199 2khc_A Testis-specific RNP-typ 22.5 1.2E+02 0.0042 19.3 4.3 51 41-91 44-101 (118)
200 2dgp_A Bruno-like 4, RNA bindi 22.1 1.5E+02 0.0051 18.4 6.4 53 39-91 15-74 (106)
201 2i2y_A Fusion protein consists 21.7 1.9E+02 0.0065 19.4 7.7 48 38-91 74-129 (150)
202 2xnq_A Nuclear polyadenylated 21.7 1.5E+02 0.0051 18.2 6.4 47 40-91 25-76 (97)
203 2ki2_A SS-DNA binding protein 21.0 1.2E+02 0.0039 18.2 3.7 49 42-91 6-61 (90)
204 1v2z_A Circadian clock protein 20.4 1.8E+02 0.0062 18.7 5.1 63 112-178 37-100 (111)
205 2cpy_A RNA-binding protein 12; 20.3 1.8E+02 0.006 18.5 4.7 53 34-92 12-77 (114)
206 2a3j_A U1 small nuclear ribonu 20.0 2E+02 0.0068 19.0 6.7 46 40-91 32-91 (127)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.97 E-value=1e-29 Score=220.54 Aligned_cols=220 Identities=21% Similarity=0.311 Sum_probs=169.4
Q ss_pred CCCCCCCCCCCccccccc--------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC-
Q 048119 29 RKHLPPGLRPYPVIGNLL--------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR- 99 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~--------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~- 99 (266)
..+.||||+++|++||++ +..+.+|+++|||++++++|+ .++|+|+||+++++++.+++..|.++
T Consensus 6 ~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~------~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 6 GAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT------KTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp ------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT------EEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred CCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC------CCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 467899999999999987 567899999999999999999 99999999999999999888888877
Q ss_pred --------CCCCCcccccCCChhHHHHHHHHHhhhcch--hhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHH
Q 048119 100 --------KHHEFSLVWLPVSTLWRSYRKMCNMHIFNR--QKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNT 169 (266)
Q Consensus 100 --------~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~ 169 (266)
...+.|++++++|+.|+++||+++++ |+. ..++.+.+.+.++++.+++.+.+. .++++|+.+.+..+
T Consensus 80 ~~~~~~~~~~~~~gl~~~~~g~~wr~~Rr~~~~~-f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~ 156 (494)
T 3swz_A 80 QMATLDIASNNRKGIAFADSGAHWQLHRRLAMAT-FALFKDGDQKLEKIICQEISTLCDMLATH--NGQSIDISFPVFVA 156 (494)
T ss_dssp CCHHHHHHTTTTCSSSSSCSSHHHHHHHHHHHHH-TTTTSSSTTCHHHHHHHHHHHHHHHHHHT--TTEEECCHHHHHHH
T ss_pred CcHHHHHhccCCCCeEeCCCCHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHc--CCCcccHHHHHHHH
Confidence 23366887777799999999999976 663 456789999999999999999764 46789999999999
Q ss_pred HHHHHHHHHhcCCccCcc--HHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc----
Q 048119 170 SINLLPNTIFSIDLVHPN--ERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI---- 243 (266)
Q Consensus 170 ~~~vi~~~~fG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~---- 243 (266)
++|+|+.++||.+++..+ ...+......+........+.+.+|+++++|.. ..++..+..+.+.+++++++++
T Consensus 157 t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 235 (494)
T 3swz_A 157 VTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNK-TLEKLKSHVKIRNDLLNKILENYKEK 235 (494)
T ss_dssp HHHHHHHHHHSCCCCTTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSCCS-HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCcCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987654 122333333444444444567788998888732 3455666667777777776652
Q ss_pred --CCCCCCHHHHHHhcc
Q 048119 244 --SIKSKDMLDTVLNII 258 (266)
Q Consensus 244 --~~~~~d~l~~ll~~~ 258 (266)
.+..+|+++.|+++.
T Consensus 236 ~~~~~~~d~l~~ll~~~ 252 (494)
T 3swz_A 236 FRSDSITNMLDTLMQAK 252 (494)
T ss_dssp CCTTCCCSHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHH
Confidence 123569999999864
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.96 E-value=5e-29 Score=216.82 Aligned_cols=222 Identities=19% Similarity=0.269 Sum_probs=156.0
Q ss_pred CCCCCCCCCCCccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---
Q 048119 29 RKHLPPGLRPYPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--- 99 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--- 99 (266)
+.+.||||+++|++||++ +..+.+|+++|||+|++++|+ .++|+++||+++++|+.++...|.++
T Consensus 7 ~~~~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~------~~~vvv~dp~~i~~il~~~~~~f~~r~~~ 80 (507)
T 3pm0_A 7 SKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGS------CPIVVLNGERAIHQALVQQGSAFADRPSF 80 (507)
T ss_dssp ---------------------CCHHHHHHHHHHHHCSEEEEEETT------EEEEEECSHHHHHHHHTTTTTTSCBCCCC
T ss_pred CCCCCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEECC------ccEEEECCHHHHHHHHHhCcHhhCCCCcc
Confidence 467899999999999987 778999999999999999999 99999999999999998777778766
Q ss_pred -----CCCCCcccccCCChhHHHHHHHHHhhhcchhhh------hhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHH
Q 048119 100 -----KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKL------DASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFN 168 (266)
Q Consensus 100 -----~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l------~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~ 168 (266)
...|.+++++.+|+.|+++||++++. |+.... +.+.+.+.++++++++.+.+.+++++++|+.+++.+
T Consensus 81 ~~~~~~~~g~~l~~~~~g~~w~~~R~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~ 159 (507)
T 3pm0_A 81 ASFRVVSGGRSMAFGHYSEHWKVQRRAAHSM-MRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVV 159 (507)
T ss_dssp HHHHHGGGGTCSSSSCSSHHHHHHHHHHHHH-HHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHH
T ss_pred hHHHhhcCCCceEECCCChHHHHHHHHHHHH-HHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHH
Confidence 22466777776799999999999965 443222 348999999999999999876555678999999999
Q ss_pred HHHHHHHHHHhcCCccCccHHHHH---HHHHHHHHHhCCCCccchhcccccCCCc--chHHHHHHHHHHHHHHHhhhhhc
Q 048119 169 TSINLLPNTIFSIDLVHPNERKFK---DTVWGMMEEAGKPNLSDHFPLLKKLDLQ--GTRHRNTLYAGEMFEVQEHGCSI 243 (266)
Q Consensus 169 ~~~~vi~~~~fG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~l~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~ 243 (266)
+++|+++.++||.+++..+ ..+. +.+..+........+...+|+++++|.. +..++..+..+.+.+++.+.+++
T Consensus 160 ~~~dvi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (507)
T 3pm0_A 160 AVANVMSAVCFGCRYSHDD-PEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLR 238 (507)
T ss_dssp HHHHHHHHHHTSCCCCTTC-HHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCC-HHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 3333 3334444444444456678888887732 13455666666666666666642
Q ss_pred ------C-CCCCCHHHHHHhcc
Q 048119 244 ------S-IKSKDMLDTVLNII 258 (266)
Q Consensus 244 ------~-~~~~d~l~~ll~~~ 258 (266)
. ..++|+++.+++..
T Consensus 239 ~~~~~~~~~~~~d~l~~ll~~~ 260 (507)
T 3pm0_A 239 HCESLRPGAAPRDMMDAFILSA 260 (507)
T ss_dssp HHHHCCTTCCCCSHHHHHHHHH
T ss_pred HHhccccccCCccHHHHHHHHh
Confidence 1 34679999999653
No 3
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=206.99 Aligned_cols=220 Identities=17% Similarity=0.279 Sum_probs=165.0
Q ss_pred CCCCCCCCCCccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC----
Q 048119 30 KHLPPGLRPYPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---- 99 (266)
Q Consensus 30 ~~~ppgp~~~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---- 99 (266)
.+.+|||+++|++||++ +..+.+++++||||+++++|+ .++++++||+++++|+.++...|.++
T Consensus 15 lp~~PgP~~~p~~G~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~------~~~vvv~~~~~i~~il~~~~~~f~~r~~~~ 88 (495)
T 2hi4_A 15 LKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGS------TPVLVLSRLDTIRQALVRQGDDFKGRPDLY 88 (495)
T ss_dssp CBCCCCCCCBTTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETT------EEEEEECSHHHHHHHHTTTGGGSCBCCCCH
T ss_pred CCCCCCCCCCcceeeHHhcCccHHHHHHHHHHHhCCEEEEEECC------ccEEEECCHHHHHHHHHhcchhhCCCCCcH
Confidence 44459999999999986 678899999999999999999 99999999999999998765567654
Q ss_pred ----CCCCCccccc-CCChhHHHHHHHHHhhh--cchhhh---h---hhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH
Q 048119 100 ----KHHEFSLVWL-PVSTLWRSYRKMCNMHI--FNRQKL---D---ASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA 166 (266)
Q Consensus 100 ----~~~~~~l~~~-~~g~~w~~~Rk~~~~~~--f~~~~l---~---~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~ 166 (266)
...+.|++++ ++|+.|+++||++++++ |+..++ + .+.+.+.++++++++.|.+.+.+++++|+.+++
T Consensus 89 ~~~~~~~~~~l~~~~~~g~~w~~~Rr~~~~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~ 168 (495)
T 2hi4_A 89 TSTLITDGQSLTFSTDSGPVWAARRRLAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQV 168 (495)
T ss_dssp HHHTSTTSCCTTTSSCCSHHHHHHHHHHHHHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHH
T ss_pred HHHHhcCCCCEEEcCCCChHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHH
Confidence 2235677776 45999999999999762 333332 2 689999999999999998755456789999999
Q ss_pred HHHHHHHHHHHHhcCCccCccHHHHHHH---HHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc
Q 048119 167 FNTSINLLPNTIFSIDLVHPNERKFKDT---VWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI 243 (266)
Q Consensus 167 ~~~~~~vi~~~~fG~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 243 (266)
..+++|+|+.++||.+++..+ .++... +..+........+...+|+++++|. +..++..+..+.+.+++.+.|++
T Consensus 169 ~~~~~dvi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~ 246 (495)
T 2hi4_A 169 VVSVANVIGAMCFGQHFPESS-DEMLSLVKNTHEFVETASSGNPLDFFPILRYLPN-PALQRFKAFNQRFLWFLQKTVQE 246 (495)
T ss_dssp HHHHHHHHHHHHHGGGSCTTC-HHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHHhcccchHHHHhHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887554 333333 3333332222234567788777763 23455566666677777666652
Q ss_pred ------CCCCCCHHHHHHhc
Q 048119 244 ------SIKSKDMLDTVLNI 257 (266)
Q Consensus 244 ------~~~~~d~l~~ll~~ 257 (266)
....+|+++.|++.
T Consensus 247 r~~~~~~~~~~d~l~~ll~~ 266 (495)
T 2hi4_A 247 HYQDFDKNSVRDITGALFKH 266 (495)
T ss_dssp HHHTCCTTCCCSHHHHHHHH
T ss_pred HHHhhcccccccHHHHHHHH
Confidence 22347999999964
No 4
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.96 E-value=1e-27 Score=208.34 Aligned_cols=214 Identities=15% Similarity=0.145 Sum_probs=154.6
Q ss_pred CCCCCCCCCCCccccccc----------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccC
Q 048119 29 RKHLPPGLRPYPVIGNLL----------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCD 98 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~----------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~ 98 (266)
+.+.||||+++|++||++ +..+.+|+++|||++++++|+ .++|+++||+++++++.++ .|.+
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~------~~~vvv~~p~~~~~il~~~--~~~~ 114 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISG------EETLIISKSSSMFHIMKHN--HYSS 114 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSS------SEEEEECCHHHHHHHHHSG--GGCC
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCC------ccEEEECCHHHHHHHHhcC--CCCC
Confidence 467899999999999997 236788999999999999999 9999999999999999643 4554
Q ss_pred C----------CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHH
Q 048119 99 R----------KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFN 168 (266)
Q Consensus 99 ~----------~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~ 168 (266)
+ ...|.|+++..+|+.|+++||.+++. |+..+++.+.+.+.++++++++.|.+..+.++++|+.+++..
T Consensus 115 r~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~-f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~ 193 (503)
T 3s79_A 115 RFGSKLGLQCIGMHEKGIIFNNNPELWKTTRPFFMKA-LSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRR 193 (503)
T ss_dssp CCCCHHHHHHHTCTTSSSTTCCCHHHHHHHHHHHHHH-TSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHH
T ss_pred cchhhhhhhhhccCCCceeeCCCccHHHHHHHhhhHh-hChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHH
Confidence 4 24467877776799999999999966 899999999999999999999988765445668999999999
Q ss_pred HHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCC-CccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC---
Q 048119 169 TSINLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKP-NLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--- 244 (266)
Q Consensus 169 ~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--- 244 (266)
+++|+++.++||.+++. .++.+.+....+..... .....++.+.++ .++..+..+.+.+++++.++++
T Consensus 194 ~~~~vi~~~~fG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~ 265 (503)
T 3s79_A 194 VMLDTSNTLFLRIPLDE---SAIVVKIQGYFDAWQALLIKPDIFFKISWL-----YKKYEKSVKDLKDAIEVLIAEKRRR 265 (503)
T ss_dssp HHHHHHHHHHTCCCCCH---HHHHHHHHHHHHHHHHHTTCCHHHHHSGGG-----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCc---hhHHHHHHHHHHHHHHHhcCcHHHhhcchh-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998863 23333333332221110 001111111121 2444555566666666655421
Q ss_pred -------CCCCCHHHHHHhccc
Q 048119 245 -------IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 245 -------~~~~d~l~~ll~~~~ 259 (266)
.+..|+++.|++..+
T Consensus 266 ~~~~~~~~~~~d~l~~ll~~~~ 287 (503)
T 3s79_A 266 ISTEEKLEECMDFATELILAEK 287 (503)
T ss_dssp HHTCTTTTTTCCHHHHHHHHHH
T ss_pred hhcccccchHHHHHHHHHHhcc
Confidence 123499999997653
No 5
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.96 E-value=4.7e-29 Score=215.91 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=131.6
Q ss_pred CCCCCCCCCCCccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHc-CccccCC--
Q 048119 29 RKHLPPGLRPYPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEH-DSLFCDR-- 99 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~-~~~~~~~-- 99 (266)
+++.||||+++|++||+. +.++.+|+++|||++++++|+ .++|+++||+++++|+.++ ...|.++
T Consensus 12 k~~~~PGP~~~PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g~------~~~vvv~dp~~i~~il~~~~~~~f~~r~~ 85 (485)
T 3nxu_A 12 KKLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQ------QPVLAITDPDMIKTVLVKECYSVFTNRRP 85 (485)
T ss_dssp HHHTCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETT------EEEEEECCHHHHHHHHTTTTTTTCCCCCC
T ss_pred hhCCCCCCCCcCeecCcHHhhcChHHHHHHHHHHcCCeEEEEeCC------CCEEEECCHHHHHHHHhccchhhccCCcc
Confidence 456689999999999998 678889999999999999999 9999999999999999876 4556655
Q ss_pred ----CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHH
Q 048119 100 ----KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLP 175 (266)
Q Consensus 100 ----~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~ 175 (266)
...+.++++.+ |+.|+++||+++++ |+.++++.+.|.+.++++++++.+.+.++.++++|+.+++..+++|+|+
T Consensus 86 ~~~~~~~~~~l~~~~-g~~w~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~ 163 (485)
T 3nxu_A 86 FGPVGFMKSAISIAE-DEEWKRLRSLLSPT-FTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVIT 163 (485)
T ss_dssp CSCCGGGGGSTTTCC-HHHHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHH
T ss_pred cccccccccCccccC-CcHHHHHHhhcChh-cCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHH
Confidence 12245666664 99999999999966 9999999999999999999999998765567789999999999999999
Q ss_pred HHHhcCCccCc
Q 048119 176 NTIFSIDLVHP 186 (266)
Q Consensus 176 ~~~fG~~~~~~ 186 (266)
.++||.+++..
T Consensus 164 ~~~fG~~~~~~ 174 (485)
T 3nxu_A 164 STSFGVNIDSL 174 (485)
T ss_dssp HHHHSCCCCGG
T ss_pred HHHcCCccccc
Confidence 99999998764
No 6
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.96 E-value=8.9e-29 Score=214.74 Aligned_cols=218 Identities=17% Similarity=0.167 Sum_probs=159.2
Q ss_pred CCCCCCCCCCCCccc-cccchHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC-------
Q 048119 28 RRKHLPPGLRPYPVI-GNLLHKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR------- 99 (266)
Q Consensus 28 ~~~~~ppgp~~~p~~-G~~~~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~------- 99 (266)
++.+.||||+++.-+ +.-.+..+.+|+++|||++++++|+ .++++++||+++++|+.+++..|.++
T Consensus 26 ~~~~lPPGP~~l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~------~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~~ 99 (496)
T 3qz1_A 26 RNLHLPPLVPGFLHLLQPNLPIHLLSLTQKLGPVYRLRLGL------QEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYK 99 (496)
T ss_dssp ---CCCCBCSCSCTTSSSCHHHHHHHGGGTSCSEEEECSSS------SCEEEECSTTHHHHTTTTSCSTTCBCCCCTTTT
T ss_pred cCCCCCcCCccccccCCCcchHHHHHHHHHhCCEEEEEeCC------cCEEEECCHHHHHHHHHhCcHhhCCCCCcchHH
Confidence 457889999873222 1111888999999999999999999 99999999999999998877777665
Q ss_pred -CCCCC-cccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHHHH
Q 048119 100 -KHHEF-SLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLPNT 177 (266)
Q Consensus 100 -~~~~~-~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~ 177 (266)
...+. |++++++|+.|+++||+++++ |+.+.++.+.+.+.++++++++.+.+. .++++|+.+++..+++|+|+.+
T Consensus 100 ~~~~~~~~l~~~~~g~~w~~~Rr~~~~~-f~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~dvi~~~ 176 (496)
T 3qz1_A 100 LVSQRCQDISLGDYSLLWKAHKKLTRSA-LLLGTRSSMEPWVDQLTQEFCERMRVQ--AGAPVTIQKEFSLLTCSIICYL 176 (496)
T ss_dssp TSCTTCCCSSSSCCSHHHHHHHHHHHHH-HHC--CCCHHHHHHHHHHHHHHHHHTT--CSCCCHHHHHHTHHHHHHTTTT
T ss_pred HhcCCCCceEECCCCHHHHHHHHHHHHH-HhhccHhhHHHHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHHHHHH
Confidence 12233 787776699999999999977 787777889999999999999999763 4678999999999999999999
Q ss_pred HhcCCccCccHHHHHHHHHHHHHHh---CC--CCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc------CCC
Q 048119 178 IFSIDLVHPNERKFKDTVWGMMEEA---GK--PNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI------SIK 246 (266)
Q Consensus 178 ~fG~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~ 246 (266)
+||. ..+ .........+.... .. ..+.+.+|+++++|.. ..++..+..+.+.+++.+.+++ .++
T Consensus 177 ~fG~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 251 (496)
T 3qz1_A 177 TFGN---KED-TLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPNP-GLWRLKQAIENRDHMVEKQLRRHKESMVAGQ 251 (496)
T ss_dssp STTC---CCH-HHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred hcCC---CCC-hHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 9998 222 22222222222221 11 1234567888887743 3456667777777777777652 235
Q ss_pred CCCHHHHHHhccc
Q 048119 247 SKDMLDTVLNIIQ 259 (266)
Q Consensus 247 ~~d~l~~ll~~~~ 259 (266)
.+|+++.|++...
T Consensus 252 ~~d~l~~ll~~~~ 264 (496)
T 3qz1_A 252 WRDMTDYMLQGVG 264 (496)
T ss_dssp CSSSHHHHTTSST
T ss_pred ccchHHHHHHHHH
Confidence 6799999998754
No 7
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.95 E-value=4.4e-27 Score=203.04 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=162.7
Q ss_pred CCCCCCCCCCCccccccc-------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC--
Q 048119 29 RKHLPPGLRPYPVIGNLL-------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-- 99 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~-------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-- 99 (266)
+.+.||||+++|++||++ +..+.+|+++|||++++++|+ .++++++||+++++|+.++...|.++
T Consensus 8 ~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~------~~~vvv~~~~~v~~il~~~~~~f~~r~~ 81 (476)
T 3e6i_A 8 KGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGS------QRMVVMHGYKAVKEALLDYKDEFSGRGD 81 (476)
T ss_dssp --CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETT------EEEEEECSHHHHHHHHHTSTTTTCEECC
T ss_pred CCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECC------ccEEEECCHHHHHHHHhcchHhhCCCCC
Confidence 467899999999999987 678999999999999999999 99999999999999998876677655
Q ss_pred -----CCCCCcccccCCChhHHHHHHHHHhhhcchhhh--hhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHH
Q 048119 100 -----KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKL--DASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSIN 172 (266)
Q Consensus 100 -----~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~ 172 (266)
...+.|+++.+ |+.|+++||+..+. |+...+ ..+.+.+.++++++++.|.+. .++++|+.+++..+++|
T Consensus 82 ~~~~~~~~~~~l~~~~-g~~w~~~Rr~~~~~-l~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~d 157 (476)
T 3e6i_A 82 LPAFHAHRDRGIIFNN-GPTWKDIRRFSLTT-LRNYGMGKQGNESRIQREAHFLLEALRKT--QGQPFDPTFLIGCAPCN 157 (476)
T ss_dssp CGGGGGGTTSSSTTCC-STTHHHHHHHHHHH-HHHTC-CCSHHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHTHHHHH
T ss_pred CchhheecCCCEEecC-CcHHHHHHHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHHHh--CCCCcChHHHHHHHHHH
Confidence 12233777775 99999999988866 554333 357899999999999999754 45689999999999999
Q ss_pred HHHHHHhcCCccCccHHHHHHHHH---HHHHHhCCC--Cccchhc-ccccCCCcchHHHHHHHHHHHHHHHhhhhhc---
Q 048119 173 LLPNTIFSIDLVHPNERKFKDTVW---GMMEEAGKP--NLSDHFP-LLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI--- 243 (266)
Q Consensus 173 vi~~~~fG~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~p-~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--- 243 (266)
+|+.++||.+++..+ .++..... ......... .+...+| ++.++| +..++..+..+.+.+++.+.|++
T Consensus 158 vi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~lp--~~~~~~~~~~~~~~~~~~~~i~~~~~ 234 (476)
T 3e6i_A 158 VIADILFRKHFDYND-EKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYLP--GSHRKVIKNVAEVKEYVSERVKEHHQ 234 (476)
T ss_dssp HHHHHHHSCCCCTTC-HHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCC-HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998765 44333333 333332221 1224456 566665 33455666677777777777652
Q ss_pred ---CCCCCCHHHHHHhccc
Q 048119 244 ---SIKSKDMLDTVLNIIQ 259 (266)
Q Consensus 244 ---~~~~~d~l~~ll~~~~ 259 (266)
...++|+++.|++...
T Consensus 235 ~~~~~~~~d~~~~ll~~~~ 253 (476)
T 3e6i_A 235 SLDPNCPRDLTDCLLVEME 253 (476)
T ss_dssp TCCTTSCCSHHHHHHHHHH
T ss_pred cCCCCCCccHHHHHHHHHH
Confidence 1235799999997543
No 8
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.95 E-value=2.3e-27 Score=204.99 Aligned_cols=220 Identities=21% Similarity=0.300 Sum_probs=160.7
Q ss_pred CCCCCCCCCCCCCccccccc-----------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCcc
Q 048119 27 GRRKHLPPGLRPYPVIGNLL-----------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSL 95 (266)
Q Consensus 27 ~~~~~~ppgp~~~p~~G~~~-----------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~ 95 (266)
.++.+.+|||+++|++||++ +..+.+|+++|||++++++|+ .+.|+++||+++++|+.++ ..
T Consensus 20 ~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~------~~~vvv~dp~~~~~il~~~-~~ 92 (482)
T 3k9v_A 20 TRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGS------FDSVHLGSPSLLEALYRTE-SA 92 (482)
T ss_dssp CEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETT------EEEEEECSHHHHHHHHHTC-CS
T ss_pred cCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCC------CCEEEEcCHHHHHHHHHhc-CC
Confidence 34578899999999999986 457889999999999999999 9999999999999999864 45
Q ss_pred ccCCC------------CCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhh-CCccccH
Q 048119 96 FCDRK------------HHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCR-AGKAIDF 162 (266)
Q Consensus 96 ~~~~~------------~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~d~ 162 (266)
|.++. ..+.|+++.+ |+.|+++||.+++++++.+.++.+.+.+.++++++++.+.+.++ .++++|+
T Consensus 93 ~~~r~~~~~~~~~~~~~~~~~~l~~~~-g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~ 171 (482)
T 3k9v_A 93 HPQRLEIKPWKAYRDHRNEAYGLMILE-GQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDL 171 (482)
T ss_dssp SCCCCCCHHHHHHHHHHTCCCCTTTCC-HHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTH
T ss_pred CCCCCCchHHHHHHHhcCCCCCceeCC-CchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 65541 1367787775 99999999999987557888999999999999999999987643 4568999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCcc------HHHHHHHHHHHHHHhCCCCccchhc--ccccCCCcchHHHHHHHHHHHH
Q 048119 163 GQAAFNTSINLLPNTIFSIDLVHPN------ERKFKDTVWGMMEEAGKPNLSDHFP--LLKKLDLQGTRHRNTLYAGEMF 234 (266)
Q Consensus 163 ~~~~~~~~~~vi~~~~fG~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p--~l~~l~~~~~~~~~~~~~~~~~ 234 (266)
.+++.++++|+|+.++||.+++..+ ..++.+.+..+...... ...+| ++++++. ...++..+..+.+.
T Consensus 172 ~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~l~~-~~~~~~~~~~~~~~ 247 (482)
T 3k9v_A 172 YSELNKWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGK---MMVTPVELHKRLNT-KVWQAHTLAWDTIF 247 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGGG---GSSSCHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHHHH---HHhhhHHHHHhcCC-HHHHHHHHHHHHHH
Confidence 9999999999999999999985432 24455555554433222 12233 2333432 22233444444444
Q ss_pred HHHhhhhh----c--CCCCCCHHHHHHhcc
Q 048119 235 EVQEHGCS----I--SIKSKDMLDTVLNII 258 (266)
Q Consensus 235 ~~~~~~i~----~--~~~~~d~l~~ll~~~ 258 (266)
+++.+.++ + .....|+++.+++..
T Consensus 248 ~~~~~~i~~r~~~~~~~~~~d~l~~ll~~~ 277 (482)
T 3k9v_A 248 KSVKPCIDNRLQRYSQQPGADFLCDIYQQD 277 (482)
T ss_dssp HHHHHHHHHHHHHTTTCTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCchHHHHHHHhcc
Confidence 44444333 2 234578999888753
No 9
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.95 E-value=7.4e-27 Score=201.78 Aligned_cols=217 Identities=18% Similarity=0.295 Sum_probs=164.0
Q ss_pred CCCCCCCCCCccccccc-------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---
Q 048119 30 KHLPPGLRPYPVIGNLL-------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--- 99 (266)
Q Consensus 30 ~~~ppgp~~~p~~G~~~-------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--- 99 (266)
.+.||||+++|++||+. +..+.+++++|||++++++|+ .++++++||+.+++|+.++...|.++
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~------~~~v~v~~~~~i~~il~~~~~~f~~~~~~ 82 (476)
T 2fdv_A 9 GKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGP------RRVVVLCGHDAVREALVDQAEEFSGRGEQ 82 (476)
T ss_dssp CBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETT------EEEEEECSHHHHHHHHTTTTTTTCEECCC
T ss_pred CCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECC------ccEEEECCHHHHHHHHhcChHhhCCCCCc
Confidence 46799999999999986 678899999999999999999 89999999999999997665566654
Q ss_pred -----CCCCCcccccCCChhHHHHHHHHHhhhcchhhh--hhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHH
Q 048119 100 -----KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKL--DASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSIN 172 (266)
Q Consensus 100 -----~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~ 172 (266)
...+.++++++ |+.|+++||+++++ |+...+ +.+.+.+.++++++++.|.+. .++++|+.+++..+++|
T Consensus 83 ~~~~~~~~~~~l~~~~-g~~~~~~Rr~~~~~-f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~ 158 (476)
T 2fdv_A 83 ATFDWVFKGYGVVFSN-GERAKQLRRFSIAT-LRDFGVGKRGIEERIQEEAGFLIDALRGT--GGANIDPTFFLSRTVSN 158 (476)
T ss_dssp HHHHHHHTTCSSSSCC-HHHHHHHHHHHHHH-HHHTTTTSHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHH
T ss_pred HHHhhhcCCCCeEecC-chHHHHHHHHHHHH-HHHhCCChhhHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHH
Confidence 12356777775 99999999999976 887666 789999999999999999764 35689999999999999
Q ss_pred HHHHHHhcCCccCcc--HHHHHHHHHHHHHHhCCC--Cccchhcc-cccCCCcchHHHHHHHHHHHHHHHhhhhhc----
Q 048119 173 LLPNTIFSIDLVHPN--ERKFKDTVWGMMEEAGKP--NLSDHFPL-LKKLDLQGTRHRNTLYAGEMFEVQEHGCSI---- 243 (266)
Q Consensus 173 vi~~~~fG~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~p~-l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~---- 243 (266)
+|+.++||.+++..+ ...+.+.+..+....... .+.+.+|+ ++++| +..++..+..+.+.+++.+.|++
T Consensus 159 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~--~~~~~~~~~~~~~~~~~~~~i~~r~~~ 236 (476)
T 2fdv_A 159 VISSIVFGDRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLP--GPQQQAFQLLQGLEDFIAKKVEHNQRT 236 (476)
T ss_dssp HHHHHHHSSCCCTTCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcCCCCCHHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987554 122333333433322211 12345675 55665 23355566666677777766652
Q ss_pred --CCCCCCHHHHHHhcc
Q 048119 244 --SIKSKDMLDTVLNII 258 (266)
Q Consensus 244 --~~~~~d~l~~ll~~~ 258 (266)
.+.++|+++.|++..
T Consensus 237 ~~~~~~~d~l~~ll~~~ 253 (476)
T 2fdv_A 237 LDPNSPRDFIDSFLIRM 253 (476)
T ss_dssp CCTTSCCSHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHH
Confidence 123479999999764
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.95 E-value=1.6e-26 Score=199.67 Aligned_cols=215 Identities=18% Similarity=0.276 Sum_probs=162.4
Q ss_pred CCCCCCCCCCccccccc-------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---
Q 048119 30 KHLPPGLRPYPVIGNLL-------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--- 99 (266)
Q Consensus 30 ~~~ppgp~~~p~~G~~~-------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--- 99 (266)
.+.||||+++|++||+. +..+.+++++|||++++++|+ .+.++++||+.+++|+.++...|.++
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~------~~~v~v~~~~~i~~il~~~~~~f~~~~~~ 82 (476)
T 1po5_A 9 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGS------RPVVVLCGTDAIREALVDQAEAFSGRGKI 82 (476)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETT------EEEEEECSHHHHHHHHTTTTTTTCEECCG
T ss_pred CCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECC------ccEEEECCHHHHHHHHHhCcHhhCCCCCc
Confidence 56899999999999986 678899999999999999998 89999999999999997665556553
Q ss_pred -----CCCCCcccccCCChhHHHHHHHHHhhhcchh--hhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHH
Q 048119 100 -----KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQ--KLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSIN 172 (266)
Q Consensus 100 -----~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~ 172 (266)
...+.|++++ +|+.|+++||++.+. |+.. .++.+.+.+.++++++++.|.+. .++++|+.+.+..+++|
T Consensus 83 ~~~~~~~~~~~l~~~-~g~~w~~~Rr~~~~~-f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~ 158 (476)
T 1po5_A 83 AVVDPIFQGYGVIFA-NGERWRALRRFSLAT-MRDFGMGKRSVEERIQEEARCLVEELRKS--KGALLDNTLLFHSITSN 158 (476)
T ss_dssp GGGCSCCSSCCCCCS-SHHHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHH
T ss_pred HHHHhhcCCCceEec-CCcHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 1235677777 499999999999966 7766 45778999999999999999764 35689999999999999
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHHHhCCC-----Cccchhcc-cccCCCcchHHHHHHHHHHHHHHHhhhhhcC--
Q 048119 173 LLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKP-----NLSDHFPL-LKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS-- 244 (266)
Q Consensus 173 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~-l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-- 244 (266)
+|+.++||.+++..+ .++......+.+..... .+...+|+ ++++|. ..++..+..+.+.+++.+.|+++
T Consensus 159 vi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~lp~--~~~~~~~~~~~~~~~~~~~i~~r~~ 235 (476)
T 1po5_A 159 IICSIVFGKRFDYKD-PVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPG--THRQIYRNLQEINTFIGQSVEKHRA 235 (476)
T ss_dssp HHHHHHHSSCCCTTC-HHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTSSC--SHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCC-HHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987655 45555554444433211 11235665 455552 23455556666666666666521
Q ss_pred ----CCCCCHHHHHHhc
Q 048119 245 ----IKSKDMLDTVLNI 257 (266)
Q Consensus 245 ----~~~~d~l~~ll~~ 257 (266)
++++|+++.|++.
T Consensus 236 ~~~~~~~~d~l~~ll~~ 252 (476)
T 1po5_A 236 TLDPSNPRDFIDVYLLR 252 (476)
T ss_dssp TCCTTSCCSHHHHHHHH
T ss_pred hcCCCCcccHHHHHHHH
Confidence 2347999999964
No 11
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.95 E-value=1.2e-26 Score=200.76 Aligned_cols=219 Identities=21% Similarity=0.291 Sum_probs=163.3
Q ss_pred CCCCCCCCCCCccccccc---------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC
Q 048119 29 RKHLPPGLRPYPVIGNLL---------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR 99 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~---------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~ 99 (266)
+.+.||||+++|++||+. +..+.+++++|||++++++|+ .++++++||+.+++|+.++...|+++
T Consensus 10 ~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~------~~~v~v~~~~~~~~vl~~~~~~f~~~ 83 (481)
T 3czh_A 10 PMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGG------ISTVVLNGYDVVKECLVHQSEIFADR 83 (481)
T ss_dssp --CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETT------EEEEEEESHHHHHHHHTTTTTTTCBC
T ss_pred CCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECC------ccEEEECCHHHHHHHHhhchHhhCCC
Confidence 367899999999999986 346788999999999999999 89999999999999998766667655
Q ss_pred C--------CCCCcccccCCChhHHHHHHHHHhhhcchhhh--hhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHH
Q 048119 100 K--------HHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKL--DASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNT 169 (266)
Q Consensus 100 ~--------~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~ 169 (266)
. ..+.|+++..+|+.|+++||+++++ |+...+ +.+.+.+.++++++++.+.+. .++++|+.+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~-f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~ 160 (481)
T 3czh_A 84 PCLPLFMKMTKMGGLLNSRYGRGWVDHRRLAVNS-FRYFGYGQKSFESKILEETKFFNDAIETY--KGRPFDFKQLITNA 160 (481)
T ss_dssp CCCHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHH-HHHTTTTSTTHHHHHHHHHHHHHHHHHTT--TTCCBCCHHHHHHH
T ss_pred CCcHHHHhhcCCCCeEeCCCChHHHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHHHHHc--CCCCcCHHHHHHHH
Confidence 1 1234655555699999999999976 775543 578999999999999999754 35679999999999
Q ss_pred HHHHHHHHHhcCCccCccHHHHH---HHHHHHHHHhCCCC--ccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC
Q 048119 170 SINLLPNTIFSIDLVHPNERKFK---DTVWGMMEEAGKPN--LSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS 244 (266)
Q Consensus 170 ~~~vi~~~~fG~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (266)
++|+|+.++||.+++..+ .++. +.+..+........ +...+|+++++|.. ..++..+..+.+.+++.+.|+++
T Consensus 161 ~~~vi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~~-~~~~~~~~~~~~~~~~~~~i~~r 238 (481)
T 3czh_A 161 VSNITNLIIFGERFTYED-TDFQHMIELFSENVELAASASVFLYNAFPWIGILPFG-KHQQLFRNAAVVYDFLSRLIEKA 238 (481)
T ss_dssp HHHHHHHHHHSSCCCTTC-HHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987544 3333 33444443332211 34567877777632 34556666677777777776521
Q ss_pred ------CCCCCHHHHHHhcc
Q 048119 245 ------IKSKDMLDTVLNII 258 (266)
Q Consensus 245 ------~~~~d~l~~ll~~~ 258 (266)
..++|+++.|++..
T Consensus 239 ~~~~~~~~~~d~l~~ll~~~ 258 (481)
T 3czh_A 239 SVNRKPQLPQHFVDAYLDEM 258 (481)
T ss_dssp HTTCCTTCCSSHHHHHHHHH
T ss_pred HHhcCCCchHHHHHHHHHHH
Confidence 23479999999764
No 12
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.95 E-value=2.2e-27 Score=203.40 Aligned_cols=219 Identities=14% Similarity=0.180 Sum_probs=169.5
Q ss_pred CCCCCCCC-CCccccccc------hHHHHHHHHhcC-CcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC--
Q 048119 30 KHLPPGLR-PYPVIGNLL------HKSLAKLAKIHG-PIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-- 99 (266)
Q Consensus 30 ~~~ppgp~-~~p~~G~~~------~~~~~~~~~~yG-~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-- 99 (266)
.+.||||+ ++|++||+. +.++.+++++|| ++|++++++ .++|+++||+++++++.++...|.++
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~~~~~~~~~~~~~~~yG~~i~~~~~~~------~~~vvv~~p~~~~~il~~~~~~~~~~~~ 75 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVG------KRVTIVGDPHEHSRFFLPRNEVLSPREV 75 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHHHHCHHHHHHHHHHHHTCSEEEEEETT------EEEEEECCGGGTHHHHSSCTTTEESTGG
T ss_pred CCCCCCCCCCcchhccHHHHccCHHHHHHHHHHHhCCCeEEEEECC------EeEEEEeCHHHHHHHHhCChhhccchhh
Confidence 45788866 599999987 778899999999 999999999 99999999999999998776667665
Q ss_pred -----CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHH-HHHHhhhCCccccHHHHHHHHHHHH
Q 048119 100 -----KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLT-YVEENCRAGKAIDFGQAAFNTSINL 173 (266)
Q Consensus 100 -----~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~d~~~~~~~~~~~v 173 (266)
...|.|+++..+|+.|+++||.+++. |+.++++.+.+.+.++++++++ .|.+ .++++|+.+++..+++|+
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~~~vd~~~~~~~~~~~~ 151 (450)
T 3gw9_A 76 YSFMVPVFGEGVAYAAPYPRMREQLNFLAEE-LTIAKFQNFVPAIQHEVRKFMAANWDK---DEGEINLLEDCSTMIINT 151 (450)
T ss_dssp GGGGHHHHCTTSGGGSCHHHHHHHHHHHHHT-TSGGGCTTHHHHHHHHHHHHHHHHSCS---SEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccCCCcHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhcc---CCCcccHHHHHHHHHHHH
Confidence 12366777655699999999999966 8999999999999999999998 5532 345799999999999999
Q ss_pred HHHHHhcCCccCcc-HHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc--------C
Q 048119 174 LPNTIFSIDLVHPN-ERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI--------S 244 (266)
Q Consensus 174 i~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--------~ 244 (266)
++.++||.+++... ...+.+.+..+..... .+...+|+++++|.+ ..++..++.+.+.+++.+.+++ .
T Consensus 152 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~l~~lp~~-~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 228 (450)
T 3gw9_A 152 ACQCLFGEDLRKRLDARRFAQLLAKMESSLI--PAAVFLPILLKLPLP-QSARCHEARTELQKILSEIIIARKEEEVNKD 228 (450)
T ss_dssp HHHHHSCHHHHHHSCHHHHHHHHHHHHHTCC--GGGGTCGGGGGSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCcchhhhhhhHHHHHHHHHHHhccc--cchhcccchhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999876432 2555555555533222 345577888887743 3455566666777776666652 1
Q ss_pred CCCCCHHHHHHhccccc
Q 048119 245 IKSKDMLDTVLNIIQDK 261 (266)
Q Consensus 245 ~~~~d~l~~ll~~~~~~ 261 (266)
...+|+++.|+++..++
T Consensus 229 ~~~~d~l~~ll~~~~~~ 245 (450)
T 3gw9_A 229 SSTSDLLSGLLSAVYRD 245 (450)
T ss_dssp CCCCSHHHHHHHCBCTT
T ss_pred CccchHHHHHHHhhccC
Confidence 45679999999876433
No 13
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.95 E-value=4.3e-26 Score=197.00 Aligned_cols=215 Identities=21% Similarity=0.311 Sum_probs=151.6
Q ss_pred CCCCCCCCCCccccccc-------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---
Q 048119 30 KHLPPGLRPYPVIGNLL-------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--- 99 (266)
Q Consensus 30 ~~~ppgp~~~p~~G~~~-------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--- 99 (266)
.+.||||+++|++||+. +..+.+++++|||++++++|+ .+.++++||+.+++|+.++...|.++
T Consensus 10 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~------~~~v~v~~~~~~~~il~~~~~~f~~~~~~ 83 (477)
T 1r9o_A 10 GKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGL------KPIVVLHGYEAVKEALIDLGEEFSGRGIF 83 (477)
T ss_dssp CBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSS------CEEEEECSHHHHHHHHTTTTTTTCEECCC
T ss_pred CCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECC------CcEEEECCHHHHHHHHhcccHhhCCCCcc
Confidence 46799999999999986 568899999999999999998 89999999999999997665556553
Q ss_pred -----CCCCCcccccCCChhHHHHHHHHHhhhcchh--hhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHH
Q 048119 100 -----KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQ--KLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSIN 172 (266)
Q Consensus 100 -----~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~ 172 (266)
...|.|++++ +|+.|+++||++.+. |+.. .++.+.+.+.++++++++.|.+. .++++|+.+.+..+++|
T Consensus 84 ~~~~~~~~~~~l~~~-~g~~w~~~Rr~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~ 159 (477)
T 1r9o_A 84 PLAERANRGFGIVFS-NGKKWKEIRRFSLMT-LRNFGMGKRSIEDRVQEEARCLVEELRKT--KASPCDPTFILGCAPCN 159 (477)
T ss_dssp SCCCTTTCTTSSTTC-CHHHHHHHHHHHHHH-HTTSSSCSSCHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHHHHHHH
T ss_pred hhhhhccCCCceEec-CChHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHH
Confidence 1235677777 499999999999966 7765 44678999999999999999753 34689999999999999
Q ss_pred HHHHHHhcCCccCccHHHHHHHHH---HHHHHhCCC--Cccchhcc-cccCCCcchHHHHHHHHHHHHHHHhhhhhc---
Q 048119 173 LLPNTIFSIDLVHPNERKFKDTVW---GMMEEAGKP--NLSDHFPL-LKKLDLQGTRHRNTLYAGEMFEVQEHGCSI--- 243 (266)
Q Consensus 173 vi~~~~fG~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~p~-l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--- 243 (266)
+|+.++||.+++..+ .++..... ......... .+...+|+ ++++|. ..++..+..+.+.+++.+.|++
T Consensus 160 vi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~lp~--~~~~~~~~~~~~~~~~~~~i~~r~~ 236 (477)
T 1r9o_A 160 VICSIIFHKRFDYKD-QQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPG--THNKLLKNVAFMKSYILEKVKEHQE 236 (477)
T ss_dssp HHHHHHHSCCCCTTC-HHHHHHHHHHHHHHHHHTCCBC-------CCCSCCTT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCcCCCCC-HHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987655 33433333 333222211 22345675 445542 2245555666666666666652
Q ss_pred ---CCCCCCHHHHHHhc
Q 048119 244 ---SIKSKDMLDTVLNI 257 (266)
Q Consensus 244 ---~~~~~d~l~~ll~~ 257 (266)
..+++|+++.|++.
T Consensus 237 ~~~~~~~~d~l~~ll~~ 253 (477)
T 1r9o_A 237 SMDMNNPQDFIDCFLMK 253 (477)
T ss_dssp TCCTTCCCSHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHH
Confidence 22347999999964
No 14
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.94 E-value=9.7e-27 Score=200.27 Aligned_cols=218 Identities=13% Similarity=0.113 Sum_probs=164.5
Q ss_pred CCCCCCCCC-Cccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---
Q 048119 30 KHLPPGLRP-YPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--- 99 (266)
Q Consensus 30 ~~~ppgp~~-~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--- 99 (266)
.+.||+|++ +|++||++ +.++.+++++|||||++++++ .++|+++||+++++++.+++..|.++
T Consensus 10 ~~~PP~~~~~lP~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~~------~~~vvv~~~~~i~~il~~~~~~~~~~~~~ 83 (461)
T 3ld6_A 10 VKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVG------KTFTYLLGSDAAALLFNSKNEDLNAEDVY 83 (461)
T ss_dssp CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETT------EEEEEECSHHHHHHHHHCCTTTEESHHHH
T ss_pred CCCCCCCCCCcCeeeeHHHhhhCHHHHHHHHHHHhCCEEEEEECC------ccEEEEeCHHHHHHHHhCCccccCCCcch
Confidence 345777764 89999987 778999999999999999999 99999999999999998877777665
Q ss_pred -----CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHH
Q 048119 100 -----KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLL 174 (266)
Q Consensus 100 -----~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi 174 (266)
...|.++++..+|+.|+++|+++++. |+...++.+.+.+.++++++++.|.+ ++.+|+.+.+..++++++
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i 158 (461)
T 3ld6_A 84 SRLTTPVFGKGVAYDVPNPVFLEQKKMLKSG-LNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTA 158 (461)
T ss_dssp HHHHHHHHCTTSGGGSCHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHHHH
T ss_pred hhhhhccCCCccccCCCcHHHHHHHHhcccc-ccHHHHhhhhHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHH
Confidence 23467777766799999999999966 99999999999999999999887743 346899999999999999
Q ss_pred HHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhh----cCCCCCCH
Q 048119 175 PNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCS----ISIKSKDM 250 (266)
Q Consensus 175 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~d~ 250 (266)
+.++||.+++....+.+.+....+...+. .....+|. |+|.+ ...+..++.+.+.+++.+.|+ +.+..+|+
T Consensus 159 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~i~~r~~~~~~~~d~ 233 (461)
T 3ld6_A 159 SHCLHGKEIRSQLNEKVAQLYADLDGGFS--HAAWLLPG--WLPLP-SFRRRDRAHREIKDIFYKAIQKRRQSQEKIDDI 233 (461)
T ss_dssp HHHHTCHHHHHTCCHHHHHHHHHHHTTSS--HHHHHSCT--TSCCH-HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSH
T ss_pred HHHHcCcchhhhhhhhhhhhhhhhhhhhh--hHHHhhhh--hccCc-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 99999998765431344444333322211 11222332 44433 345556677777777777776 33456899
Q ss_pred HHHHHhcccccCC
Q 048119 251 LDTVLNIIQDKSE 263 (266)
Q Consensus 251 l~~ll~~~~~~~~ 263 (266)
++.|+++..++++
T Consensus 234 l~~ll~~~~~~~~ 246 (461)
T 3ld6_A 234 LQTLLDATYKDGR 246 (461)
T ss_dssp HHHHHTCBCTTSC
T ss_pred hhhhHHhhhcccC
Confidence 9999987765543
No 15
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.94 E-value=1.8e-25 Score=193.05 Aligned_cols=217 Identities=15% Similarity=0.216 Sum_probs=148.7
Q ss_pred CCCCCCCCCCCccccccc-------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC--
Q 048119 29 RKHLPPGLRPYPVIGNLL-------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-- 99 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~-------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-- 99 (266)
+.++||||+++|++||++ +..+.+|+++|||||++++|+ .++|+|+||+++++||.+++..|++|
T Consensus 8 ~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~------~~~vvv~~p~~i~~vl~~~~~~f~~r~~ 81 (479)
T 3tbg_A 8 KGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW------TPVVVLNGLAAVREALVTHGEDTADRPP 81 (479)
T ss_dssp -CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT------EEEEEEEHHHHHHHHHTTTGGGSCBCCC
T ss_pred CCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC------eeEEEECCHHHHHHHHHhCChhhcCCCc
Confidence 357899999999999987 678899999999999999999 99999999999999998877777665
Q ss_pred ---------CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhh--hHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHH
Q 048119 100 ---------KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDA--SQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFN 168 (266)
Q Consensus 100 ---------~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~--~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~ 168 (266)
...+.+++++.+|+.|+++|+.+.+. |+...+.. +.+.+......+.+.+... .++.+|+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~ 158 (479)
T 3tbg_A 82 VPITQILGFGPRSQGVFLARYGPAWREQRRFSVST-LRNLGLGKKSLEQWVTEEAACLCAAFANH--SGRPFRPNGLLDK 158 (479)
T ss_dssp CGGGGGGTCBTTBCCSTTCCSSHHHHHHHHHHHHH-HHHTTSTTCHHHHHHHHHHHHHHHHHHTT--TTCCBCTHHHHHH
T ss_pred hHHHHHhccCCCCCceeeCCCCHHHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHHHHHHhc--cCCcccHHHHHHH
Confidence 12245666776799999999999976 66655532 4566666666666665443 4568999999999
Q ss_pred HHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCC--C---ccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhh-
Q 048119 169 TSINLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKP--N---LSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCS- 242 (266)
Q Consensus 169 ~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~- 242 (266)
+++|+++.++||.+++..+ ................. . .....|+..+++ ....+.....+...+.+++.++
T Consensus 159 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 235 (479)
T 3tbg_A 159 AVSNVIASLTCGRRFEYDD-PRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIP--ALAGKVLRFQKAFLTQLDELLTE 235 (479)
T ss_dssp HHHHHHHHHHHSCCCCTTC-HHHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGGSH--HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcccccc-hhhhhhhhhhhhhhhhhhhhhhhhhcccchhccch--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 33333333332222111 1 111223322222 2223334444444444444443
Q ss_pred ------cCCCCCCHHHHHHhc
Q 048119 243 ------ISIKSKDMLDTVLNI 257 (266)
Q Consensus 243 ------~~~~~~d~l~~ll~~ 257 (266)
.....+|+++.++..
T Consensus 236 ~~~~~~~~~~~~d~~~~~~~~ 256 (479)
T 3tbg_A 236 HRMTWDPAQPPRDLTEAFLAE 256 (479)
T ss_dssp HHHHCCTTSCCCSHHHHHHHH
T ss_pred HHHhhhcccccchhhhhhhhh
Confidence 223557888877654
No 16
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.94 E-value=3.2e-25 Score=191.98 Aligned_cols=151 Identities=18% Similarity=0.204 Sum_probs=126.4
Q ss_pred CCCCCCCCCCCCCccccccc-----------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCcc
Q 048119 27 GRRKHLPPGLRPYPVIGNLL-----------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSL 95 (266)
Q Consensus 27 ~~~~~~ppgp~~~p~~G~~~-----------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~ 95 (266)
.++.+.+|||+..++. +++ +.++.+|+++||||+++++|+ .+.|+++||+++++|+.++. .
T Consensus 5 ~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~------~~~vvv~dp~~~~~il~~~~-~ 76 (487)
T 3n9y_A 5 PRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGN------VESVYVIDPEDVALLFKSEG-P 76 (487)
T ss_dssp CBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETT------EEEEEECCHHHHHHHHHTCC-S
T ss_pred CCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCC------CCEEEEcCHHHHHHHHHhCC-C
Confidence 3457779999987765 443 567889999999999999999 99999999999999997653 5
Q ss_pred ccCC------------CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhh----hCCcc
Q 048119 96 FCDR------------KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENC----RAGKA 159 (266)
Q Consensus 96 ~~~~------------~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~----~~~~~ 159 (266)
|.++ ...+.|+++. +|+.|+++||.+++++|+.++++.+.+.+.++++++++.|.+.. +++.+
T Consensus 77 f~~r~~~~~~~~~~~~~~~~~~l~~~-~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~ 155 (487)
T 3n9y_A 77 NPERFLIPPWVAYHQYYQRPIGVLLK-KSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYS 155 (487)
T ss_dssp SCCCCCCHHHHHHHHHTTCCCCGGGC-CHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEE
T ss_pred CCCCCCCcHHHHHHHHccccCCCccC-CcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 6554 1235677666 49999999999997679999999999999999999999997643 12457
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCccCc
Q 048119 160 IDFGQAAFNTSINLLPNTIFSIDLVHP 186 (266)
Q Consensus 160 ~d~~~~~~~~~~~vi~~~~fG~~~~~~ 186 (266)
+|+.+++.++++|+|+.++||.+++..
T Consensus 156 vd~~~~~~~~t~dvi~~~~fG~~~~~~ 182 (487)
T 3n9y_A 156 GDISDDLFRFAFESITNVIFGERQGML 182 (487)
T ss_dssp ECCHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999998753
No 17
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.93 E-value=8.3e-25 Score=188.69 Aligned_cols=216 Identities=15% Similarity=0.099 Sum_probs=157.0
Q ss_pred CCCCCCCCCccccccc-------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC----
Q 048119 31 HLPPGLRPYPVIGNLL-------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---- 99 (266)
Q Consensus 31 ~~ppgp~~~p~~G~~~-------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---- 99 (266)
+.||||+++|++||++ +..+.+++++|||++++++++ .+.++++||+++++|+.+. .|.+.
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~------~~~v~v~~~~~~~~il~~~--~f~~~~~~~ 74 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPG------RVTRYLSSQRLIKEACDES--RFDKNLSQA 74 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETT------EEEEEECCHHHHHHHTCTT--TEEECCCHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCC------ccEEEECCHHHHHHHHhhc--CcCcCchhH
Confidence 4589999999999986 567889999999999999998 9999999999999999532 24321
Q ss_pred -----CCCCCccccc-CCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHH
Q 048119 100 -----KHHEFSLVWL-PVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINL 173 (266)
Q Consensus 100 -----~~~~~~l~~~-~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~v 173 (266)
...+.|+++. .+|+.|+++||.++++ |+..+++.+.+.+.++++++++.|.+.. .++++|+.+++..+++|+
T Consensus 75 ~~~~~~~~~~~l~~~~~~g~~w~~~Rr~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~vd~~~~~~~~~~~v 152 (470)
T 2ij2_A 75 LKFVRDFAGDGLFTSWTHEKNWKKAHNILLPS-FSQQAMKGYHAMMVDIAVQLVQKWERLN-ADEHIEVPEDMTRLTLDT 152 (470)
T ss_dssp HHHHHHHHTTSGGGSCTTSHHHHHHHHHHGGG-GSTTTHHHHHHHHHHHHHHHHHHHHTCC-TTCCEEHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEcCCCchHHHHHHHHhccc-cCHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEHHHHHHHHHHHH
Confidence 1125677665 4699999999999976 9999999999999999999999986532 345799999999999999
Q ss_pred HHHHHhcCCccCc--c-HHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc----CCC
Q 048119 174 LPNTIFSIDLVHP--N-ERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI----SIK 246 (266)
Q Consensus 174 i~~~~fG~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~ 246 (266)
|+.++||.+++.. + ...+.+.+.......... ....|++.+++ ....++..+..+.+.+++.+.|++ ..+
T Consensus 153 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 229 (470)
T 2ij2_A 153 IGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNK--LQRANPDDPAY-DENKRQFQEDIKVMNDLVDKIIADRKASGEQ 229 (470)
T ss_dssp HHHHHHSCCCCGGGCSSCCHHHHHHHHHHHHHHHT--C---CTTSGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCcccccccCCCCHHHHHHHHHHHHHHHH--HhhhhhHhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999988653 1 134444444433322110 01113333443 222344555666666676666652 334
Q ss_pred CCCHHHHHHhccc
Q 048119 247 SKDMLDTVLNIIQ 259 (266)
Q Consensus 247 ~~d~l~~ll~~~~ 259 (266)
.+|+++.|+++.+
T Consensus 230 ~~dll~~ll~~~~ 242 (470)
T 2ij2_A 230 SDDLLTHMLNGKD 242 (470)
T ss_dssp CSSHHHHHHHCCC
T ss_pred chhHHHHHHhccC
Confidence 5799999998654
No 18
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.93 E-value=2.2e-25 Score=191.76 Aligned_cols=218 Identities=13% Similarity=0.129 Sum_probs=162.8
Q ss_pred CCCCCCCC-CCCCccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC-
Q 048119 28 RRKHLPPG-LRPYPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR- 99 (266)
Q Consensus 28 ~~~~~ppg-p~~~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~- 99 (266)
++.+.||| |+++|++||++ +.++.+++++||||+++++++ ++.+++++|+.+++++.++...+..+
T Consensus 8 ~~~~~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~g------~~~vvv~~~~~~~~il~~~~~~~~~~~ 81 (461)
T 3i3k_A 8 AGVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVG------KTFTYLLGSDAAALLFNSKNEDLNAED 81 (461)
T ss_dssp --CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETT------EEEEEECSHHHHHHHHHCCTTTEESHH
T ss_pred CCCCCCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEecC------ceEEEEeChHHHHHHHhccccccccch
Confidence 44678999 89999999987 778899999999999999999 99999999999999998766545432
Q ss_pred -------CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHH
Q 048119 100 -------KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSIN 172 (266)
Q Consensus 100 -------~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~ 172 (266)
...|.|+++..+|+.|+++||++.+. |+..+++.+.+.+.++++++++.|.+ ++.+|+.+.+..++++
T Consensus 82 ~~~~~~~~~~g~g~~~~~~g~~w~~~Rr~~~~~-f~~~~l~~~~~~~~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~ 156 (461)
T 3i3k_A 82 VYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSG-LNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIIL 156 (461)
T ss_dssp HHHHHHHHHHCTTSGGGSCHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCeeeeCCCcHHHHHHHHHHhhh-hCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcCHHHHHHHHHHH
Confidence 23467777776699999999999976 89999999999999999999988743 2458999999999999
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc----CCCCC
Q 048119 173 LLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI----SIKSK 248 (266)
Q Consensus 173 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~ 248 (266)
+++.++||.++.......+.+.+..+..... .....+| .|+|.+ ..++..+..+.+.+++.+.+++ ....+
T Consensus 157 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P--~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 231 (461)
T 3i3k_A 157 TASHCLHGKEIRSQLNEKVAQLYADLDGGFS--HAAWLLP--GWLPLP-SFRRRDRAHREIKDIFYKAIQKRRQSQEKID 231 (461)
T ss_dssp HHHHHHTCHHHHHTCCHHHHHHHHHHHTTSS--HHHHHSC--TTSCCH-HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHccHhhhhHHHHHHHHHHHHHHhccc--cchhhcc--cccCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999988754321334444333321111 1122334 345433 3455666777777777777763 24557
Q ss_pred CHHHHHHhccccc
Q 048119 249 DMLDTVLNIIQDK 261 (266)
Q Consensus 249 d~l~~ll~~~~~~ 261 (266)
|+++.+++...++
T Consensus 232 d~l~~ll~~~~~~ 244 (461)
T 3i3k_A 232 DILQTLLDATYKD 244 (461)
T ss_dssp SHHHHHHTCBCTT
T ss_pred cHHHHHHHhhhcc
Confidence 9999999876443
No 19
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.93 E-value=1.9e-24 Score=185.09 Aligned_cols=209 Identities=15% Similarity=0.135 Sum_probs=153.9
Q ss_pred CCCCCCCCCCCccccccc-----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC----
Q 048119 29 RKHLPPGLRPYPVIGNLL-----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---- 99 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~-----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---- 99 (266)
+.+.||||+++|++||+. ..++.+++++|||++++++++ .+.++++||+.+++|+.++...|+.+
T Consensus 10 ~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~yg~v~~~~~~g------~~~vvv~~~~~~~~il~~~~~~~~~~~~~~ 83 (444)
T 2ve3_A 10 SLPIPPGDFGLPWLGETLNFLNDGDFGKKRQQQFGPIFKTRLFG------KNVIFISGALANRFLFTKEQETFQATWPLS 83 (444)
T ss_dssp CCCCCCCCCCBTTTBTHHHHHHCTTHHHHHHHHHCSSEEEEETT------EEEEEECSHHHHHHHTSSCTTTEEEECCHH
T ss_pred CCCCCCCCCCCCccccHHHHhcCcHHHHHHHHHcCCeEEEeeCC------CCEEEEcCHHHHHHHHhCCCcccccchhHH
Confidence 467899999999999986 227779999999999999888 89999999999999998665445432
Q ss_pred ---CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHHH
Q 048119 100 ---KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLPN 176 (266)
Q Consensus 100 ---~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~ 176 (266)
.++..++++. +|+.|+++||++++. |+.++++.+.+.+.++++++++.|.+ ++++|+.+++..+++|+++.
T Consensus 84 ~~~~~g~~~l~~~-~g~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~vi~~ 157 (444)
T 2ve3_A 84 TRILLGPNALATQ-MGEIHRSRRKILYQA-FLPRTLDSYLPKMDGIVQGYLEQWGK----ANEVIWYPQLRRMTFDVAAT 157 (444)
T ss_dssp HHHHHCTTSGGGC-CHHHHHHHHHHHHGG-GCHHHHHTTHHHHHHHHHHHHHHHHH----SSEEEHHHHHHHHHHHHHHH
T ss_pred HHHHhCccccccC-CchHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHhcC----CCcEeHHHHHHHHHHHHHHH
Confidence 1222377766 499999999999966 99999999999999999999999853 45899999999999999999
Q ss_pred HHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc----CCCCCCHHH
Q 048119 177 TIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI----SIKSKDMLD 252 (266)
Q Consensus 177 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~d~l~ 252 (266)
++|| +....+ .++.+.+..+...... +|. ++|... .++..+..+.+.+++.+.|++ ....+|+++
T Consensus 158 ~~fG-~~~~~~-~~~~~~~~~~~~~~~~------~~~--~~p~~~-~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~d~l~ 226 (444)
T 2ve3_A 158 LFMG-EKVSQN-PQLFPWFETYIQGLFS------LPI--PLPNTL-FGKSQRARALLLAELEKIIKARQQQPPSEEDALG 226 (444)
T ss_dssp HHTC-HHHHSC-TTHHHHHHHHHHHHSS------CCC--CSTTSH-HHHHHHHHHHHHHHHHHHHHHHHTSCCCCSSHHH
T ss_pred HHcC-CCcccH-HHHHHHHHHHHHHHhc------CCc--cCCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHH
Confidence 9999 333222 3344444444333221 121 233221 234455566666666666653 235679999
Q ss_pred HHHhcccc
Q 048119 253 TVLNIIQD 260 (266)
Q Consensus 253 ~ll~~~~~ 260 (266)
.|+++.++
T Consensus 227 ~ll~~~~~ 234 (444)
T 2ve3_A 227 ILLAARDD 234 (444)
T ss_dssp HHHHCBCT
T ss_pred HHHhcccc
Confidence 99987543
No 20
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.92 E-value=6.8e-25 Score=189.04 Aligned_cols=212 Identities=15% Similarity=0.203 Sum_probs=135.8
Q ss_pred CCCCCCCCCCccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccc-cCC---
Q 048119 30 KHLPPGLRPYPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLF-CDR--- 99 (266)
Q Consensus 30 ~~~ppgp~~~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~-~~~--- 99 (266)
...||||+++|++||+. +.++.++++ ||||+++++++ .++++|+||+.+++|+.++ .| .+.
T Consensus 22 ~eppPgP~~~P~iG~~~~~~~~p~~~~~~l~~-yGpv~~~~~g~------~~~~vv~~~~~i~~il~~~--~~~~~~~~~ 92 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRLARDPLAFMSQLRD-HGDVVRIKLGP------KTVYAVTNPELTGALALNP--DYHIAGPLW 92 (467)
T ss_dssp CBCCEECCCCSTTHHHHHHHHCHHHHHHHHGG-GCSEEEEEETT------EEEEEECSHHHHHHHHHCT--TC-------
T ss_pred CCCCCCCCCCCcccchHHhccCHHHHHHHHHH-hCCEEEEEeCC------ccEEEECCHHHHHHHHhCc--CcccccchH
Confidence 45688999999999987 667888887 99999999999 9999999999999999765 44 222
Q ss_pred ----CCCC-CcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHH
Q 048119 100 ----KHHE-FSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLL 174 (266)
Q Consensus 100 ----~~~~-~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi 174 (266)
...| .++++.+ |+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ ++++|+.+++..++++++
T Consensus 93 ~~~~~~~g~~~l~~~d-g~~h~~~R~~l~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~vi 166 (467)
T 3dbg_A 93 ESLEGLLGKEGVATAN-GPLHRRQRRTIQPA-FRLDAIPAYGPIMEEEAHALTERWQP----GKTVDATSESFRVAVRVA 166 (467)
T ss_dssp ------------------------CGGGHHH-HSTTTSTTTHHHHHHHHHHHHHHSCT----TSCEEHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcccCC-cHHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHhcc----CCcCcHHHHHHHHHHHHH
Confidence 2224 6776664 99999999999966 99999999999999999999998843 568999999999999999
Q ss_pred HHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhc--ccccCCCcchHHHHHHHHHHHHHHHhhhhhc----CCCCC
Q 048119 175 PNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFP--LLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI----SIKSK 248 (266)
Q Consensus 175 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~ 248 (266)
+.++||.+++......+...+..+...... ...+| ++.++|.+ ..++..+..+.+.+++.+.+++ ..+.+
T Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 242 (467)
T 3dbg_A 167 ARCLLRGQYMDERAERLCVALATVFRGMYR---RMVVPLGPLYRLPLP-ANRRFNDALADLHLLVDEIIAERRASGQKPD 242 (467)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHhCCcccchhHHHHHHHHHHHHHHHHH---HhccchhhhhhCCCh-HhHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 999999988753224555555555443222 22334 23444422 2344555566666666666653 23457
Q ss_pred CHHHHHHhcccc
Q 048119 249 DMLDTVLNIIQD 260 (266)
Q Consensus 249 d~l~~ll~~~~~ 260 (266)
|+++.|++..++
T Consensus 243 dll~~ll~~~~~ 254 (467)
T 3dbg_A 243 DLLTALLEAKDD 254 (467)
T ss_dssp SHHHHHTTC---
T ss_pred HHHHHHHhhccC
Confidence 999999987654
No 21
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.90 E-value=1.3e-23 Score=180.44 Aligned_cols=211 Identities=12% Similarity=0.114 Sum_probs=138.2
Q ss_pred CCCCC-CCCCccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCCC---
Q 048119 31 HLPPG-LRPYPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK--- 100 (266)
Q Consensus 31 ~~ppg-p~~~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~--- 100 (266)
+.||| |+++|++||+. +.++.+++++|||++++++++ .++++++||+++++|+.++...|.++.
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~------~~~~vv~~~~~~~~il~~~~~~~~~~~~~~ 77 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRTDPIGLMQRVRDELGDVGTFQLAG------KQVVLLSGSHANEFFFRAGDDDLDQAKAYP 77 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETT------EEEEEECSHHHHHHHHHCCTTTEECTTSCG
T ss_pred CCCCCCCCCCCCccCHHHHhhChHHHHHHHHHHcCCEEEEEeCC------ceEEEECCHHHHHHHHhcCccccCcccchh
Confidence 56887 88999999986 678899999999999999999 899999999999999986555565541
Q ss_pred ----CCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHHH
Q 048119 101 ----HHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLPN 176 (266)
Q Consensus 101 ----~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~ 176 (266)
..|.+++ . +|+.|+++|+.++++ |+.++++.+.+.+.++++++++.|.+ ++++|+.+++..+++|+++.
T Consensus 78 ~~~~~~g~~~~-~-~~~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~~~~----~~~vd~~~~~~~~~~~vi~~ 150 (455)
T 2cib_A 78 FMTPIFGEGVV-F-DASPERRKEMLHNAA-LRGEQMKGHAATIEDQVRRMIADWGE----AGEIDLLDFFAELTIYTSSA 150 (455)
T ss_dssp GGHHHHC-----------------------CCHHHHHHHHHHHHHHHHHHHTTCCS----EEEEEHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCccc-c-CcHHHHHHHhhhccc-cCHHHHHHHHHHHHHHHHHHHHHhCC----CCcEeHHHHHHHHHHHHHHH
Confidence 1134443 4 499999999999965 99999999999999999999988632 35799999999999999999
Q ss_pred HHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc----CC---CCCC
Q 048119 177 TIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI----SI---KSKD 249 (266)
Q Consensus 177 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~~---~~~d 249 (266)
++||.+++.....++.+.+..+..... .+...+| |+|.+ ..++..++.+.+.+++.+.|++ .. ..+|
T Consensus 151 ~~fG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p---~l~~~-~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~d 224 (455)
T 2cib_A 151 CLIGKKFRDQLDGRFAKLYHELERGTD--PLAYVDP---YLPIE-SFRRRDEARNGLVALVADIMNGRIANPPTDKSDRD 224 (455)
T ss_dssp HHTCHHHHTTCCHHHHHHHHHHHTTCC--GGGGTCT---TCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCC
T ss_pred HHcCCCcchhhhHHHHHHHHHHHhhhh--HHHHhcc---cCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccc
Confidence 999998865321455555554432111 1122334 33322 2344555666666666666652 11 1239
Q ss_pred HHHHHHhcccc
Q 048119 250 MLDTVLNIIQD 260 (266)
Q Consensus 250 ~l~~ll~~~~~ 260 (266)
+++.|+++.++
T Consensus 225 ll~~ll~~~~~ 235 (455)
T 2cib_A 225 MLDVLIAVKAE 235 (455)
T ss_dssp HHHHHHHCBCT
T ss_pred HHHHHHHhhhh
Confidence 99999987543
No 22
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.90 E-value=2.7e-22 Score=172.20 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=148.9
Q ss_pred ccccchHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC-------------CCCCCcccc
Q 048119 42 IGNLLHKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-------------KHHEFSLVW 108 (266)
Q Consensus 42 ~G~~~~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-------------~~~~~~l~~ 108 (266)
.|...+..+.+|+++||||+++++|+ .+.|+++||+++++|+.++ .|.++ ...|.|+++
T Consensus 8 ~g~~~~~~~~~~~~kyG~v~~~~~~~------~~~vvv~~p~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~ 79 (456)
T 3mdm_A 8 GGRVLQDVFLDWAKKYGPVVRVNVFH------KTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFGERLFGQGLVS 79 (456)
T ss_dssp -CCCHHHHHHHHHHHHCSEEEEEETT------EEEEEECCHHHHHHHHTCT--TSCCCHHHHHHHHEETTEESSTTSTTT
T ss_pred CcchHHHHHHHHHHHhCCeEEEEeCC------CCEEEECCHHHHHHHHhhc--cccccchhHHHHHHhhcccccCCCccc
Confidence 34444788999999999999999999 9999999999999999642 23332 123677777
Q ss_pred cCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHHHHHhcCCccCcc-
Q 048119 109 LPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLPNTIFSIDLVHPN- 187 (266)
Q Consensus 109 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~- 187 (266)
..+|+.|+++||+++++ |+.++++.+.+.+.++++++++.+.+.+++++++|+.+++..+++|+++.++||.+++..+
T Consensus 80 ~~~g~~w~~~Rr~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~ 158 (456)
T 3mdm_A 80 ECNYERWHKQRRVIDLA-FSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLG 158 (456)
T ss_dssp CCCHHHHHHHHHHHGGG-GSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGT
T ss_pred CCChHHHHHHHhhcccc-cCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcc
Confidence 65699999999999965 9999999999999999999999998765556789999999999999999999999987542
Q ss_pred -HHHHHHHHHHHHHHhCCCCccchhcccccCCCc-chHHHHHHHHHHHHHHHhhhhhc--------CCCCCCHHHHHHhc
Q 048119 188 -ERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQ-GTRHRNTLYAGEMFEVQEHGCSI--------SIKSKDMLDTVLNI 257 (266)
Q Consensus 188 -~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~d~l~~ll~~ 257 (266)
..++.+.+..+...... ...|++.++|.. ...+...+..+.+.+++.+.+++ ...+.|+++.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~d~l~~ll~~ 234 (456)
T 3mdm_A 159 AQKPLSQAVKLMLEGITA----SRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEEVPADILTQILKA 234 (456)
T ss_dssp CCHHHHHHHHHHHHHHHH----HHHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH----HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHh
Confidence 24455555544443221 123444455521 11233444555555555555541 12356999999986
Q ss_pred c
Q 048119 258 I 258 (266)
Q Consensus 258 ~ 258 (266)
.
T Consensus 235 ~ 235 (456)
T 3mdm_A 235 E 235 (456)
T ss_dssp T
T ss_pred c
Confidence 4
No 23
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.88 E-value=1.1e-21 Score=167.53 Aligned_cols=195 Identities=12% Similarity=0.135 Sum_probs=138.9
Q ss_pred CCCCCCCCCCccccccc-------hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccccCCC-
Q 048119 30 KHLPPGLRPYPVIGNLL-------HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK- 100 (266)
Q Consensus 30 ~~~ppgp~~~p~~G~~~-------~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~- 100 (266)
++.||||+++|++|++. +.++.++ ++||||+++++ ++ .++++++||+.+++|+.++ .|.++.
T Consensus 25 ~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~------~~~vvv~~~~~v~~vl~~~--~f~~~~~ 95 (436)
T 2cd8_A 25 QQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEG------DEVWLVVGYDRARAVLADP--RFSKDWR 95 (436)
T ss_dssp ---------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSC------CEEEEECSHHHHHHHHHCT--TEECCGG
T ss_pred ccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCC------CeEEEEcCHHHHHHHHcCC--CCccccc
Confidence 56799999999999974 6688888 89999999997 77 8899999999999999764 354430
Q ss_pred ----------C-CCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HH
Q 048119 101 ----------H-HEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FN 168 (266)
Q Consensus 101 ----------~-~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~ 168 (266)
. .+.++++. +|+.|+++||++++. |+.++++.+.+.+.++++++++.|.+. .++++|+.+++ ..
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~-dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~ 171 (436)
T 2cd8_A 96 NSTTPLTEAEAALNHNMLES-DPPRHTRLRKLVARE-FTMRRVELLRPRVQEIVDGLVDAMLAA--PDGRADLMESLAWP 171 (436)
T ss_dssp GCSSCCCTTGGGTCCSGGGC-CTTHHHHHHHHHGGG-SSHHHHHTTHHHHHHHHHHHHHHHHTC--TTSCEEHHHHTTTH
T ss_pred cccccccccccccccccccc-CchHHHHHHHHhHHh-hCHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCcchHHHHHHH
Confidence 1 24566665 599999999999965 999999999999999999999999742 35689999977 57
Q ss_pred HHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CC
Q 048119 169 TSINLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IK 246 (266)
Q Consensus 169 ~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~ 246 (266)
+++|+|+. +||.+.+.. +.+...+..+.. . . + | ++..+..+.+.+++.+.|+++ ..
T Consensus 172 ~~~~vi~~-~~G~~~~~~--~~~~~~~~~~~~---~---~---~-----~-----~~~~~~~~~~~~~~~~~i~~r~~~~ 229 (436)
T 2cd8_A 172 LPITVISE-LLGVPEPDR--AAFRVWTDAFVF---P---D---D-----P-----AQAQTAMAEMSGYLSRLIDSKRGQD 229 (436)
T ss_dssp HHHHHHHH-HHTCCGGGH--HHHHHHHHHHHS---C---S---S-----T-----THHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHH-HhCCCHHHH--HHHHHHHHHHhc---c---C---C-----H-----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999998 699876432 444444433321 0 0 0 1 234455666666777666632 24
Q ss_pred CCCHHHHHHhccc
Q 048119 247 SKDMLDTVLNIIQ 259 (266)
Q Consensus 247 ~~d~l~~ll~~~~ 259 (266)
.+|+++.|+++.+
T Consensus 230 ~~d~l~~ll~~~~ 242 (436)
T 2cd8_A 230 GEDLLSALVRTSD 242 (436)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CCCHHHHHHHhhh
Confidence 5799999998654
No 24
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.88 E-value=4.6e-23 Score=178.70 Aligned_cols=218 Identities=12% Similarity=0.073 Sum_probs=158.3
Q ss_pred CCCCCCCCCCC-Cccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCc-cccCC
Q 048119 28 RRKHLPPGLRP-YPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDS-LFCDR 99 (266)
Q Consensus 28 ~~~~~ppgp~~-~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~-~~~~~ 99 (266)
++.+.||||++ +|++||++ +.++.+++++|||++++++++ .++++|+||+.+++++.++.. .+..+
T Consensus 10 ~~~~~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg~------~~~vvv~~p~~v~~vl~~~~~~~~~~~ 83 (491)
T 3v8d_A 10 RQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMG------KYVHFITNPLSYHKVLCHGKYFDWKKF 83 (491)
T ss_dssp CCTTSCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETT------EEEEEECCGGGHHHHHSCCTTEESSHH
T ss_pred cCCCCCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEECC------EEEEEEcCHHHHHHHHhcCCccchHHH
Confidence 34678999998 59999987 789999999999999999999 999999999999999965431 23222
Q ss_pred ------CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhh---CCccccHHHHHHHHH
Q 048119 100 ------KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCR---AGKAIDFGQAAFNTS 170 (266)
Q Consensus 100 ------~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~---~~~~~d~~~~~~~~~ 170 (266)
...|.+.....+|+.|+++|+.+.+. |+.++++.+.+.+.+++.++++.+..... .....++.+.+..++
T Consensus 84 ~~~~~~~~~g~~~~~~~~g~~~~~~Rr~~~~~-f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (491)
T 3v8d_A 84 HFALSAKAFGHRSIDPMDGNTTENINDTFIKT-LQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVM 162 (491)
T ss_dssp HHHHHHHHHTCCCCCGGGSSBCCCHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHH
T ss_pred HHHHHHHhcCCcccccccchhHHHHHHHHHHH-cCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHH
Confidence 11233433333599999999999865 89999999999999999999885532221 234689999999999
Q ss_pred HHHHHHHHhcCCccCcc--HHHHHHHHHHHHHHhCCCCccchhcccc-cCCCcchHHHHHHHHHHHHHHHhhhhhcC-CC
Q 048119 171 INLLPNTIFSIDLVHPN--ERKFKDTVWGMMEEAGKPNLSDHFPLLK-KLDLQGTRHRNTLYAGEMFEVQEHGCSIS-IK 246 (266)
Q Consensus 171 ~~vi~~~~fG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~l~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~ 246 (266)
+++++..+||.+....+ ...+.+.+..+.. +.+.+|.+. ++| ....++..++.+.+.+++.+.++++ ++
T Consensus 163 ~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~p-~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 235 (491)
T 3v8d_A 163 FEAGYLTIFGRDLTRRDTQKAHILNNLDNFKQ------FDKVFPALVAGLP-IHMFRTAHNAREKLAESLRHENLQKRES 235 (491)
T ss_dssp HHHHHHHHHCBCCSCGGGHHHHHHHHHHHHHH------HHHHHHHHHTTCC-GGGCHHHHHHHHHHHHHTSHHHHTTCBS
T ss_pred HHHHHHHHcCccccccchhhhhhHHHHHHHHH------HHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999876533 1223333333321 233445332 344 2334667777788888777766643 45
Q ss_pred CCCHHHHHHhccc
Q 048119 247 SKDMLDTVLNIIQ 259 (266)
Q Consensus 247 ~~d~l~~ll~~~~ 259 (266)
..|+++.+++..+
T Consensus 236 ~~d~l~~l~~~~~ 248 (491)
T 3v8d_A 236 ISELISLRMFLND 248 (491)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhh
Confidence 6799999987543
No 25
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.86 E-value=4e-20 Score=156.40 Aligned_cols=198 Identities=12% Similarity=0.117 Sum_probs=140.5
Q ss_pred CCCCCCCCccccccc---hHHHHHHHHhcCCcEEEecC-ccccCCceEEEEeCCHHHHHHHHHHcC-ccccCC-------
Q 048119 32 LPPGLRPYPVIGNLL---HKSLAKLAKIHGPIMNLRLG-VRLSFNLVTTVVVSSPSTAKAILKEHD-SLFCDR------- 99 (266)
Q Consensus 32 ~ppgp~~~p~~G~~~---~~~~~~~~~~yG~i~~~~~~-~~~~~~~~~~v~v~dp~~~~~i~~~~~-~~~~~~------- 99 (266)
.||||+++|++|++. +..+.+++ +||||+++.++ + .+.++|++++.+++++.++. ..+..+
T Consensus 2 ~pPGp~~~P~~g~~~~~p~~~~~~l~-~~Gpv~~~~~~~g------~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~ 74 (404)
T 1jfb_A 2 MASGAPSFPFSRASGPEPPAEFAKLR-ATNPVSQVKLFDG------SLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELS 74 (404)
T ss_dssp ----CCBSSCCCSSTTSCCTHHHHHH-HHCSEEEEECTTS------CEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCS
T ss_pred CCCCCCCCCCCCCcCCCccHHHHHHH-HhCCeeeeecCCC------CceEEEecHHHHHHHHcCCcccccccccCCcccc
Confidence 489999999999987 77788885 59999999874 5 66778999999999997652 122222
Q ss_pred ------CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHH
Q 048119 100 ------KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINL 173 (266)
Q Consensus 100 ------~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~v 173 (266)
..++.++++.+ |+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+..++++++|+.+.+...+.++
T Consensus 75 ~~~~~~~~~~~~l~~~~-g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~ 152 (404)
T 1jfb_A 75 ASGKQAAKAKPTFVDMD-PPEHMHQRSMVEPT-FTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSY 152 (404)
T ss_dssp HHHHHHTTSCCCGGGCC-TTHHHHHHTTTGGG-GSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHH
T ss_pred ccccchhcccCcccccC-chhHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Confidence 11124566664 99999999999965 99999999999999999999999987543356799999999999999
Q ss_pred HHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHH
Q 048119 174 LPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDML 251 (266)
Q Consensus 174 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l 251 (266)
++..+||.+.+. .++....... .. . +.+ ..++..+..+.+.+++.+.|+++ ...+|++
T Consensus 153 i~~~~~G~~~~~---~~~~~~~~~~---~~--------~---~~~---~~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~l 212 (404)
T 1jfb_A 153 IIYTLLGVPFND---LEYLTQQNAI---RT--------N---GSS---TAREASAANQELLDYLAILVEQRLVEPKDDII 212 (404)
T ss_dssp HHHHHHTCCGGG---HHHHHHHHHH---HH--------C---TTS---CHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHH
T ss_pred HHHHHcCCCHHH---HHHHHHHHHH---Hh--------c---cCc---chHHHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 999999987753 2222222111 10 0 111 12344555666667777666532 3457999
Q ss_pred HHHHhcc
Q 048119 252 DTVLNII 258 (266)
Q Consensus 252 ~~ll~~~ 258 (266)
+.|++..
T Consensus 213 ~~ll~~~ 219 (404)
T 1jfb_A 213 SKLCTEQ 219 (404)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9999643
No 26
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.86 E-value=1e-19 Score=154.60 Aligned_cols=193 Identities=11% Similarity=0.013 Sum_probs=138.9
Q ss_pred Cccccccc------hHHHHHHHHhcC-CcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---------CCC
Q 048119 39 YPVIGNLL------HKSLAKLAKIHG-PIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---------KHH 102 (266)
Q Consensus 39 ~p~~G~~~------~~~~~~~~~~yG-~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---------~~~ 102 (266)
.|++||+. +.++.+++++|| ||+++.+++ .+.+++++|+.++.++. . ..|.+. ...
T Consensus 8 ~P~lG~~~~~~~~p~~~~~~l~~~yg~pv~~~~~~g------~~~v~v~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~ 79 (417)
T 1izo_A 8 DKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLG------KNFICMTGAEAAKVFYD-T-DRFQRQNALPKRVQKSLF 79 (417)
T ss_dssp CCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETT------EEEEEECSHHHHHHHTC-T-TTEECTTCSCHHHHTTTT
T ss_pred CCccchHHHHhhCcHHHHHHHHHHhCCCeEEeecCC------ccEEEECCHHHHHHHhc-c-cccccccccccchhhhhc
Confidence 38999987 678999999998 999999888 89999999999986553 2 234322 123
Q ss_pred C-CcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHHHHHhcC
Q 048119 103 E-FSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLPNTIFSI 181 (266)
Q Consensus 103 ~-~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~ 181 (266)
| .+++.. +|+.|+++|+++++. |+.++++.+.+.+.+.++++++.|.+ ++++|+.+++..+++++++.+ ||.
T Consensus 80 g~~~l~~~-dg~~h~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~vi~~~-~G~ 152 (417)
T 1izo_A 80 GVNAIQGM-DGSAHIHRKMLFLSL-MTPPHQKRLAELMTEEWKAAVTRWEK----ADEVVLFEEAKEILCRVACYW-AGV 152 (417)
T ss_dssp CTTCGGGC-CHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEHHHHHHHHHHHHHHHH-HTC
T ss_pred cccceeec-CChHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeHHHHHHHHHHHHHHHH-cCC
Confidence 4 456666 499999999999966 99999999999999999999998853 467999999999999999998 699
Q ss_pred CccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC------CCCCCHHHHHH
Q 048119 182 DLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS------IKSKDMLDTVL 255 (266)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~d~l~~ll 255 (266)
+++..+..++.+.+..+...... ..| ...+..+..+.+.+++.+.|++. ...+|+++.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~l~~ll 218 (417)
T 1izo_A 153 PLKETEVKERADDFIDMVDAFGA-----VGP---------RHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMA 218 (417)
T ss_dssp CCCTTTHHHHHHHHHHHHHHTTC-----CSH---------HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTSHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhccc-----CCc---------cchhHHHHHHHHHHHHHHHHHHHHhhccCCCcCCHHHHHH
Confidence 87654323333333333332111 011 12334455566666666666521 24569999999
Q ss_pred hcccc
Q 048119 256 NIIQD 260 (266)
Q Consensus 256 ~~~~~ 260 (266)
+..++
T Consensus 219 ~~~~~ 223 (417)
T 1izo_A 219 FHTQE 223 (417)
T ss_dssp HCBCT
T ss_pred Hhccc
Confidence 87543
No 27
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.85 E-value=4.3e-21 Score=161.55 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=142.2
Q ss_pred CCCCCccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCCC--------
Q 048119 35 GLRPYPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK-------- 100 (266)
Q Consensus 35 gp~~~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~-------- 100 (266)
+++.+|++||+. +.++.+++++|||+++ ++++ .++++++||+.+++++.++ .|.++.
T Consensus 3 ~~~~~p~iGnl~~~~~~p~~~~~~l~~~yGpv~~-~~g~------~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~ 73 (389)
T 1n97_A 3 RLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFL-PLPR------FPLALIFDPEGVEGALLAE--GTTKATFQYRALSR 73 (389)
T ss_dssp ECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEE-CCTT------CCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHH
T ss_pred ccccccccccHHHHhhChHHHHHHHHHHcCCeeE-ecCC------ccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHH
Confidence 455679999986 6688999999999999 8998 8999999999999999765 565541
Q ss_pred CCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHHHHHhc
Q 048119 101 HHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLPNTIFS 180 (266)
Q Consensus 101 ~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG 180 (266)
..|.++++.+ |+.|+++||.+++. |+.++++.+.+.+.++++++++.|. ++++|+.+++..+++|+++.++||
T Consensus 74 ~~g~~l~~~~-g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~-----~~~~dl~~~~~~~~~~vi~~~~fG 146 (389)
T 1n97_A 74 LTGRGLLTDW-GESWKEARKALKDP-FLPKNVRGYREAMEEEARAFFGEWR-----GEERDLDHEMLALSLRLLGRALFG 146 (389)
T ss_dssp HHCSSTTTCC-HHHHHHHHHHHCGG-GSHHHHHTTHHHHHHHHHHHHHTCC-----SCCEEHHHHHHHHHHHHHHHHHHS
T ss_pred HhCCccccCC-cHHHHHHHHHhCcc-cCHHHHHHHHHHHHHHHHHHHHHcc-----CCcCcHHHHHHHHHHHHHHHHHcC
Confidence 2256777774 99999999999965 9999999999999999999998875 458999999999999999999999
Q ss_pred CCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc
Q 048119 181 IDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI 243 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 243 (266)
.+++ + ++.+.+..+...... ..++++.|+|.. ..++..++.+.+.+++.+.+++
T Consensus 147 ~~~~--~--~~~~~~~~~~~~~~~----~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~i~~ 200 (389)
T 1n97_A 147 KPLS--P--SLAEHALKALDRIMA----QTRSPLALLDLA-AEARFRKDRGALYREAEALIVH 200 (389)
T ss_dssp SCCC--H--HHHHHHHHHHHHHHH----HHHCGGGGGCHH-HHHHHHHHHHHHHHHHGGGTTS
T ss_pred Ccch--H--HHHHHHHHHHHHHHH----HHhhHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHH
Confidence 9886 2 444455444443211 112222455522 2355667777888888888864
No 28
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.84 E-value=2.2e-19 Score=152.39 Aligned_cols=196 Identities=9% Similarity=-0.022 Sum_probs=136.8
Q ss_pred CCCCCCCccccccc------hHHHHHHHHhc-CCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC------
Q 048119 33 PPGLRPYPVIGNLL------HKSLAKLAKIH-GPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR------ 99 (266)
Q Consensus 33 ppgp~~~p~~G~~~------~~~~~~~~~~y-G~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~------ 99 (266)
|||| |++||+. +.++.+++++| |||+++..++ .+.+++++|+.++ ++.+. ..|.+.
T Consensus 4 pPg~---P~iG~~~~~~~~p~~~~~~l~~~y~gpv~~~~~~g------~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~ 72 (415)
T 3awm_A 4 TPHT---KGPDETLSLLADPYRFISRQCQRLGANAFESRFLL------KKTNCLKGAKAAE-IFYDT-TRFEREGAMPVA 72 (415)
T ss_dssp --------CCCCHHHHHHSTTTHHHHHHHHHTSSEEEEEETT------EEEEEEESHHHHH-HHTCT-TTEECTTCSCHH
T ss_pred CCCC---CccchHHHHHhChHHHHHHHHHHhCCCeEEEecCC------CcEEEEeCHHHHH-HHhcc-cccccccccchh
Confidence 6776 8999987 67899999999 7999999888 8999999999986 66533 334432
Q ss_pred ---CCCC-CcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHH
Q 048119 100 ---KHHE-FSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLP 175 (266)
Q Consensus 100 ---~~~~-~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~ 175 (266)
...| .+++.. +|+.|+++|+++++. |+.++++.+.+.+.+.++++++.|.+ ++++|+.+.+..+++++++
T Consensus 73 ~~~~~~g~~~l~~~-dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~~~~----~~~vdl~~~~~~~~~~vi~ 146 (415)
T 3awm_A 73 IQKTLLGQGGVQGL-DGETHRHRKQMFMGL-MTPERVRALAQLFEAEWRRAVPGWTR----KGEIVFYDELHEPLTRAVC 146 (415)
T ss_dssp HHTTTSCSSSGGGC-CHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHHHH----HSEEEHHHHHHHHHHHHHH
T ss_pred hhhhccCCcceeec-CcHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHhhcc----CCcEeHHHHHHHHHHHHHH
Confidence 1223 466666 499999999999965 99999999999999999999999965 2479999999999999999
Q ss_pred HHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc------CCCCCC
Q 048119 176 NTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI------SIKSKD 249 (266)
Q Consensus 176 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~d 249 (266)
.+ ||.+.+..+..++.+.+..+.... +. .. + ...+..++.+.+.+++.+.|++ ....+|
T Consensus 147 ~~-~G~~~~~~~~~~~~~~~~~~~~~~---------~~--~~--~-~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d 211 (415)
T 3awm_A 147 AW-AGVPLPDDEAGNRAGELRALFDAA---------GS--AS--P-RHLWSRLARRRVDAWAKRIIEGIRAGSIGSGSGT 211 (415)
T ss_dssp HH-HTCCCCGGGHHHHHHHHHHHHHST---------TC--SS--H-HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCTTS
T ss_pred HH-cCCCCCcchHHHHHHHHHHHHHHh---------cc--cC--c-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Confidence 99 899876532222222222222211 10 01 1 1234455556666666666652 124569
Q ss_pred HHHHHHhcccc
Q 048119 250 MLDTVLNIIQD 260 (266)
Q Consensus 250 ~l~~ll~~~~~ 260 (266)
+++.|++..++
T Consensus 212 ~l~~ll~~~~~ 222 (415)
T 3awm_A 212 AAYAIAWHRDR 222 (415)
T ss_dssp HHHHHHHCBCT
T ss_pred HHHHHHhhhhc
Confidence 99999987543
No 29
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.83 E-value=7.8e-21 Score=164.55 Aligned_cols=217 Identities=12% Similarity=0.096 Sum_probs=143.9
Q ss_pred CCCCCCCCCC-Cccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcC-ccccCC-
Q 048119 29 RKHLPPGLRP-YPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHD-SLFCDR- 99 (266)
Q Consensus 29 ~~~~ppgp~~-~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~-~~~~~~- 99 (266)
..+.||||++ +|++||+. +.++.+++++|||+|++++|+ .++++++||+++++++.++. ..+.+.
T Consensus 11 ~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~------~~~vvv~dp~~~~~il~~~~~~~~~~~~ 84 (491)
T 3dax_A 11 QTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMG------KYVHFITNPLSYHKVLCHGKYFDWKKFH 84 (491)
T ss_dssp CTTCCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETT------EEEEEECCGGGTHHHHSCCTTEESSHHH
T ss_pred CCCCCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEECC------eEEEEEcChHHHHHHHcCCccCChHHHH
Confidence 3567899887 79999987 678899999999999999999 99999999999999997543 222222
Q ss_pred -----CCCCCccc-ccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHh---hhCCccccHHHHHHHHH
Q 048119 100 -----KHHEFSLV-WLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEEN---CRAGKAIDFGQAAFNTS 170 (266)
Q Consensus 100 -----~~~~~~l~-~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~d~~~~~~~~~ 170 (266)
...|.+++ .. +|+.|+++|+.+.+. |+.++++.+.+.+.+.+.+.++..... ......+|+...+..++
T Consensus 85 ~~~~~~~~g~~~~~~~-~g~~w~~~r~~~~~~-f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i 162 (491)
T 3dax_A 85 FATSAKAFGHRSIDPM-DGNTTENINDTFIKT-LQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVM 162 (491)
T ss_dssp HHHHHHHHTCCCCCGG-GTSBCCCHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHH
T ss_pred HHHHHHHcCCCccccc-chhHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHH
Confidence 12245555 44 489999999998865 888888888888888887777655332 11223578999999999
Q ss_pred HHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhccc-ccCCCcchHHHHHHHHHHHHHHH-hhhhhcCCCCC
Q 048119 171 INLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLL-KKLDLQGTRHRNTLYAGEMFEVQ-EHGCSISIKSK 248 (266)
Q Consensus 171 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 248 (266)
+++++.+.||.+.+..+ .. .+.+..+.+.+. .+...+|++ .++|.. ..++..+..+.+.+.+ ++.+++.....
T Consensus 163 ~~~~~~~~fG~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~p~l~~~lp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (491)
T 3dax_A 163 FEAGYLTIFGRDLTRRD-TQ-KAHILNNLDNFK--QFDKVFPALVAGLPIH-MFRTAHNAREKLAESLRHENLQKRESIS 237 (491)
T ss_dssp HHHHHHHHHCBCSTTGG-GH-HHHHHHHHHHHH--HHHHHHHHHHTTCCGG-GSHHHHHHHHHHHHHTSHHHHTTCBSCC
T ss_pred HHHhHHHHcCccccccc-ch-hhhhhHHHHHHH--HHHHHhHHHHHhCCHh-hhhHHHHHHHHHHHHHHHHHhhcccchh
Confidence 99999999998876543 11 112222222111 123455643 334422 2234445555554443 33333444567
Q ss_pred CHHHHHHhcc
Q 048119 249 DMLDTVLNII 258 (266)
Q Consensus 249 d~l~~ll~~~ 258 (266)
|+++.+++..
T Consensus 238 d~l~~ll~~~ 247 (491)
T 3dax_A 238 ELISLRMFLN 247 (491)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 30
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.82 E-value=4.1e-19 Score=154.10 Aligned_cols=218 Identities=13% Similarity=0.144 Sum_probs=141.2
Q ss_pred CCCCCCCCCC-Cccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCc--cccCC
Q 048119 29 RKHLPPGLRP-YPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDS--LFCDR 99 (266)
Q Consensus 29 ~~~~ppgp~~-~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~--~~~~~ 99 (266)
..+.||||++ +|++||++ +.++.+++++|||+|++++|+ .++++++||+++++++.++.. .+.++
T Consensus 16 ~~~~PPgp~~~~P~iG~~~~~~~~~~~~~~~l~~kYG~i~~v~lg~------~~~vvv~~p~~~~~il~~~~~~~~~~~~ 89 (498)
T 3b6h_A 16 RPGEPPLDLGSIPWLGYALDFGKDAASFLTRMKEKHGDIFTILVGG------RYVTVLLDPHSYDAVVWEPRTRLDFHAY 89 (498)
T ss_dssp CTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETT------EEEEEECCGGGHHHHHTCCTTTEECCHH
T ss_pred CCCCCCCCCCCCcchhhHHHhccCHHHHHHHHHHHcCCeEEEEECC------eeEEEEcCHHHHHHHHhCccccCCchhh
Confidence 3677999988 89999987 678999999999999999999 999999999999999976543 23222
Q ss_pred ------CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhh-hCCccccHHHHHHHHHHH
Q 048119 100 ------KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENC-RAGKAIDFGQAAFNTSIN 172 (266)
Q Consensus 100 ------~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~d~~~~~~~~~~~ 172 (266)
...|.+++.. +|+.|+ +.+.+. |+.++++.+.+.+.+++.+.++...... .....+++...+..++++
T Consensus 90 ~~~~~~~~~g~~~~~~-~~~~~r---r~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~ 164 (498)
T 3b6h_A 90 AIFLMERIFDVQLPHY-SPSDEK---ARMKLT-LLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLR 164 (498)
T ss_dssp HHHHHHHTSCCCCTTC-CHHHHH---HHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccc-CHHHHH---HHHHHh-hchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHH
Confidence 1235565555 377764 555544 7888888888887777777766553321 122357899999999999
Q ss_pred HHHHHHhcCCccCccH---HHHHHHHHHHHHHhCCCCccchhccccc-CCCcchHHHHHHHHHHHHHHHh-hhhhcCCCC
Q 048119 173 LLPNTIFSIDLVHPNE---RKFKDTVWGMMEEAGKPNLSDHFPLLKK-LDLQGTRHRNTLYAGEMFEVQE-HGCSISIKS 247 (266)
Q Consensus 173 vi~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~l~~-l~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 247 (266)
+++.++||.+++..+. ....+.+..+.+.+. .+.+.+|++.+ +..+...++..++.+.+.+.+. +..++....
T Consensus 165 ~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (498)
T 3b6h_A 165 AGYLTLYGIEALPRTHESQAQDRVHSADVFHTFR--QLDRLLPKLARGSLSVGDKDHMCSVKSRLWKLLSPARLARRAHR 242 (498)
T ss_dssp HHHHHHHCBSCSSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCHHHHTTCBSC
T ss_pred HHHHhhcCcccccccccchhhHHHhhHHHHHHHH--HHHhhHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhccccH
Confidence 9999999998765431 112233333333221 12345564322 2111222344455555544433 222233456
Q ss_pred CCHHHHHHhccc
Q 048119 248 KDMLDTVLNIIQ 259 (266)
Q Consensus 248 ~d~l~~ll~~~~ 259 (266)
.|+++.+++..+
T Consensus 243 ~d~l~~ll~~~~ 254 (498)
T 3b6h_A 243 SKWLESYLLHLE 254 (498)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999997543
No 31
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.80 E-value=1e-18 Score=148.91 Aligned_cols=207 Identities=10% Similarity=0.084 Sum_probs=139.6
Q ss_pred CCCCCCCCCCCccccccc-----------hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccc
Q 048119 29 RKHLPPGLRPYPVIGNLL-----------HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLF 96 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~-----------~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~ 96 (266)
++++||| ++|++. +..+.++++ ||||++++. |+ .+++++++|+.+++++.+. ..|
T Consensus 4 ~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~------~~~vvv~~~~~v~~vl~~~-~~f 70 (428)
T 1cpt_A 4 RATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGY------DPMWIATKHADVMQIGKQP-GLF 70 (428)
T ss_dssp TCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTS------CCEEEECSHHHHHHHHHCT-TTE
T ss_pred ccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCC------CCeEEEccHHHHHHHHcCc-hhc
Confidence 3667887 677654 235666665 799999997 67 8999999999999999643 456
Q ss_pred cCC-C------------C---CC------CcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 048119 97 CDR-K------------H---HE------FSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENC 154 (266)
Q Consensus 97 ~~~-~------------~---~~------~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~ 154 (266)
+++ . . .| .++++. +|+.|+++||++++. |+.++++.+.+.+.++++++++.|.+
T Consensus 71 s~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-~g~~~~~~Rr~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~-- 146 (428)
T 1cpt_A 71 SNAEGSEILYDQNNEAFMRSISGGCPHVIDSLTSM-DPPTHTAYRGLTLNW-FQPASIRKLEENIRRIAQASVQRLLD-- 146 (428)
T ss_dssp ESSSSCSSCCCHHHHHHHHHHTTTSSCSSCCGGGC-CTTHHHHHHHHHHTT-SSHHHHGGGHHHHHHHHHHHHHHHHT--
T ss_pred cCccccccCCcccccchhccccccccccccccccC-ChHHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 554 1 1 11 346666 499999999999965 99999999999999999999999965
Q ss_pred hCCccccHHHH-HHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHH
Q 048119 155 RAGKAIDFGQA-AFNTSINLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEM 233 (266)
Q Consensus 155 ~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~ 233 (266)
.++++|+.+. ...+++|+|+.+ ||.+.+.. +.+.+....+...... ....+|++.+++ +...++..+..+.+
T Consensus 147 -~~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~--~~~~~~~~~~~~~~~~--~~~~~P~l~~~~-~~~~~~~~~~~~~~ 219 (428)
T 1cpt_A 147 -FDGECDFMTDCALYYPLHVVMTA-LGVPEDDE--PLMLKLTQDFFGVHEP--DEQAVAAPRQSA-DEAARRFHETIATF 219 (428)
T ss_dssp -SSSEEEHHHHTTTTHHHHHHHHH-HTCCGGGH--HHHHHHHHTTTCC-------------------CHHHHHHHHHHHH
T ss_pred -hCCCeehHHHHHhhhHHHHHHHH-cCCCHhHH--HHHHHHHHHHHhcccc--cccccccccccc-hhhHHHHHHHHHHH
Confidence 2357999855 467999999999 99977532 3343333322111100 112334443331 12335566777788
Q ss_pred HHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 234 FEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 234 ~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
.+++.+.|+++ +..+|+++.|+++..
T Consensus 220 ~~~~~~~i~~r~~~~~~dll~~ll~~~~ 247 (428)
T 1cpt_A 220 YDYFNGFTVDRRSCPKDDVMSLLANSKL 247 (428)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHCBS
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHhccc
Confidence 88888888743 345799999998753
No 32
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.80 E-value=1.9e-18 Score=146.26 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=138.1
Q ss_pred CCCCCCCCCCCccccccc---hHHHHHHHHhcCCcEEEe----c-CccccCCceEEEEeCCHHHHHHHH-HHcCccccCC
Q 048119 29 RKHLPPGLRPYPVIGNLL---HKSLAKLAKIHGPIMNLR----L-GVRLSFNLVTTVVVSSPSTAKAIL-KEHDSLFCDR 99 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~---~~~~~~~~~~yG~i~~~~----~-~~~~~~~~~~~v~v~dp~~~~~i~-~~~~~~~~~~ 99 (266)
..+.||||+++|+. +. +..+.++ ++||||++++ + ++. .++++++||+.+++|+ .++ . |.++
T Consensus 8 ~~~lppgp~~~p~~--~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~-----~~~vvv~~~~~i~~vl~~~~-~-~~~~ 77 (406)
T 1ued_A 8 VAPLLREPANFQLR--TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGR-----DFVWQAHGYEVVRRILGDHE-H-FTTR 77 (406)
T ss_dssp CCCEEECCTTTTCE--ETTEECHHHHHH-HTTCSEEEEESHHHHHTTS-----SCEEEECSHHHHHHHHHCCS-S-EECC
T ss_pred CCCCcccCcccCCC--CCCCcHHHHHHH-HHhCCeeeecccccCCCCC-----ccEEEEcCHHHHHHHHhhCc-c-cccc
Confidence 35678999999987 32 7888999 9999999999 5 431 3789999999999999 432 2 3322
Q ss_pred -C--C----------CCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH
Q 048119 100 -K--H----------HEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA 166 (266)
Q Consensus 100 -~--~----------~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~ 166 (266)
. + .+.++++. +|+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~ 152 (406)
T 1ued_A 78 PQFTQSKSGAHVEAQFVGQISTY-DPPEHTRLRKMLTPE-FTVRRIRRMEPAIQSLIDDRLDLLEA---EGPSADLQGLF 152 (406)
T ss_dssp CCC---------CGGGTTCGGGC-CTTHHHHHHHHHGGG-SSHHHHHHHHHHHHHHHHHHHHHHHH---HCTTEEHHHHT
T ss_pred ccccccccccccccccccccccC-CCHHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHH
Confidence 0 0 23456666 599999999999966 99999999999999999999999974 35689999988
Q ss_pred HH-HHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC-
Q 048119 167 FN-TSINLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS- 244 (266)
Q Consensus 167 ~~-~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~- 244 (266)
.. +++|+++ .+||.+.+. .+.+.+.+..+. .. ..+ .++..+..+.+.+++.+.|+++
T Consensus 153 ~~~~~~~vi~-~~~G~~~~~--~~~~~~~~~~~~----~~----------~~~----~~~~~~~~~~~~~~~~~~i~~r~ 211 (406)
T 1ued_A 153 ADPVGAHALC-ELLGIPRDD--QREFVRRIRRNA----DL----------SRG----LKARAADSAAFNRYLDNLLARQR 211 (406)
T ss_dssp HHHHHHHHHH-HHHTCCHHH--HHHHHHHHHHCC-----------------CC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHH-HHcCCCHHH--HHHHHHHHHHHH----hc----------cCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 9999999 479987532 133333322211 10 011 1344555666666666666532
Q ss_pred -CCCCCHHHHHHhcc
Q 048119 245 -IKSKDMLDTVLNII 258 (266)
Q Consensus 245 -~~~~d~l~~ll~~~ 258 (266)
...+|+++.|+++.
T Consensus 212 ~~~~~d~l~~ll~~~ 226 (406)
T 1ued_A 212 ADPDDGLLGMIVRDH 226 (406)
T ss_dssp HSCCSSHHHHHHHHH
T ss_pred hCCCCCHHHHHHHhc
Confidence 34579999999763
No 33
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.80 E-value=5.7e-18 Score=143.56 Aligned_cols=193 Identities=11% Similarity=0.128 Sum_probs=137.4
Q ss_pred CCCCCCCCCcccccc---c---hHHHHHHHHhc-CCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccccCC---
Q 048119 31 HLPPGLRPYPVIGNL---L---HKSLAKLAKIH-GPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--- 99 (266)
Q Consensus 31 ~~ppgp~~~p~~G~~---~---~~~~~~~~~~y-G~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--- 99 (266)
+.||+|++.|.+..- . +..+.++ ++| |||+++++ ++ .+.++++||+++++|+.++. +.++
T Consensus 5 ~~~~~~~~~P~~~~~~~~~~~p~~~~~~l-~~~yGpv~~~~~~g~------~~~vvv~~~~~v~~vl~~~~--~~~~~~~ 75 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSCPYQLPDGYAQL-RDTPGPLHRVTLYDG------RQAWVVTKHEAARKLLGDPR--LSSNRTD 75 (412)
T ss_dssp ---CCCCSSCBSSCCCSSTTSCCHHHHHH-HHSSSSEEEEECTTS------CEEEEECSHHHHHHHHTCTT--EECCTTS
T ss_pred CCCCCCCCCCCCCCCchhccChHHHHHHH-HhcCCCeEeeccCCC------CcEEEEecHHHHHHHHcCcc--cccCccc
Confidence 456777766644221 1 7788999 777 99999997 78 89999999999999997532 2222
Q ss_pred ----CC---------CCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH
Q 048119 100 ----KH---------HEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA 166 (266)
Q Consensus 100 ----~~---------~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~ 166 (266)
.. .+.++++. +|+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~ 150 (412)
T 2zbx_A 76 DNFPATSPRFEAVRESPQAFIGL-DPPEHGTRRRMTISE-FTVKRIKGMRPEVEEVVHGFLDEMLA---AGPTADLVSQF 150 (412)
T ss_dssp TTSCCCSGGGC----CCCCGGGC-CTTHHHHHHTTTGGG-GSHHHHHHHHHHHHHHHHHHHHHHHH---HCSCEEHHHHT
T ss_pred ccccccccccccccccccccccC-CcHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHH
Confidence 11 23456666 599999999999976 99999999999999999999999975 35689999988
Q ss_pred H-HHHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC-
Q 048119 167 F-NTSINLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS- 244 (266)
Q Consensus 167 ~-~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~- 244 (266)
. .+++++++. +||.+.+.. +.+...+..+... . .. ++..+..+.+.+++.+.|+++
T Consensus 151 ~~~~~~~vi~~-~~G~~~~~~--~~~~~~~~~~~~~----------------~-~~--~~~~~~~~~~~~~~~~~i~~r~ 208 (412)
T 2zbx_A 151 ALPVPSMVICR-LLGVPYADH--EFFQDASKRLVQS----------------T-DA--QSALTARNDLAGYLDGLITQFQ 208 (412)
T ss_dssp TTHHHHHHHHH-HHTCCGGGH--HHHHHHHHHHHHC----------------S-SH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCCHHHH--HHHHHHHHHHhcc----------------C-cH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 7 499999997 699876532 4444444433220 0 11 344555666666666666532
Q ss_pred -CCCCCHHHHHHhccc
Q 048119 245 -IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 245 -~~~~d~l~~ll~~~~ 259 (266)
...+|+++.|++..+
T Consensus 209 ~~~~~d~l~~ll~~~~ 224 (412)
T 2zbx_A 209 TEPGAGLVGALVADQL 224 (412)
T ss_dssp HSCCSSHHHHHHHTTT
T ss_pred hCCCCCHHHHHHHhcc
Confidence 235799999998653
No 34
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.79 E-value=7.2e-19 Score=151.61 Aligned_cols=209 Identities=16% Similarity=0.198 Sum_probs=138.5
Q ss_pred CCCCCCCCC-Cccccccc------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---
Q 048119 30 KHLPPGLRP-YPVIGNLL------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--- 99 (266)
Q Consensus 30 ~~~ppgp~~-~p~~G~~~------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--- 99 (266)
.+.||||++ +|++||++ +.++.+++++|||++++++|+ .++++++||+.+++++.++.. +..+
T Consensus 17 ~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~------~~~vvv~~~~~~~~il~~~~~-~~~~~~~ 89 (475)
T 3b98_A 17 RNEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAG------LYITVLLDSNCYDAVLSDVAS-LDQTSYA 89 (475)
T ss_dssp TTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETT------EEEEEECCTTTHHHHHTCTTT-EESHHHH
T ss_pred CCCCCCCCCCcchHHhHHHHhhCHHHHHHHHHHHhCCeEEEEECC------ceEEEEeCHHHHHHHHcCccc-CCchHHH
Confidence 678999998 89999987 778999999999999999999 999999999999999975432 3221
Q ss_pred -----CCCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhh-h-CCccccHHHHHHHHHHH
Q 048119 100 -----KHHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENC-R-AGKAIDFGQAAFNTSIN 172 (266)
Q Consensus 100 -----~~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~d~~~~~~~~~~~ 172 (266)
...|.+++..+ |+.| |+++.+. |+.++++.+.+.+.+++.++++.+.... . ....+++...+..++++
T Consensus 90 ~~~~~~~~g~~~~~~~-~~~~---R~~~~~~-f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
T 3b98_A 90 QVLMKRIFNMILPSHN-PESE---KKRAEMH-FQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFK 164 (475)
T ss_dssp HHHHHHTTCCCCTTCC-HHHH---HHHHHHH-TSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCC-hHHH---HHHHHHH-cChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHH
Confidence 22355665553 6665 5677755 8999999999999999988887764321 1 11256788888888888
Q ss_pred HHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhccccc--CCCcchHHHHHHHHHHHHHHHhh-hhhcCCCCCC
Q 048119 173 LLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKK--LDLQGTRHRNTLYAGEMFEVQEH-GCSISIKSKD 249 (266)
Q Consensus 173 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~--l~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~d 249 (266)
+++...||.+.+ +...+.+....+.. +.+.+|++.+ ++ ....++..++.+.+.+.+.+ ..++.....|
T Consensus 165 ~~~~~~~g~~~~--~~~~~~~~~~~~~~------~~~~~p~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 235 (475)
T 3b98_A 165 TGYLTVFGAENN--NSAALTQIYEEFRR------FDKLLPKLARTTVN-KEEKQIASAAREKLWKWLTPSGLDRKPREQS 235 (475)
T ss_dssp HHHHHHHCCTTS--CHHHHHHHHHHHHH------HHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHHHSCTTSCCCCCTTS
T ss_pred HhhhheeCCccc--cchhcHHHHHHHHH------HHhhhHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHhhccccccH
Confidence 888888885422 21223333322221 1234453322 22 12233445555555554433 2223345679
Q ss_pred HHHHHHhccc
Q 048119 250 MLDTVLNIIQ 259 (266)
Q Consensus 250 ~l~~ll~~~~ 259 (266)
+++.+++..+
T Consensus 236 ~l~~ll~~~~ 245 (475)
T 3b98_A 236 WLGSYVKQLQ 245 (475)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997643
No 35
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.78 E-value=7e-18 Score=142.74 Aligned_cols=193 Identities=11% Similarity=0.163 Sum_probs=140.6
Q ss_pred CCCCCCCCCccccccc---hHHHHHHHHhcCCcEEEec-CccccCCceE-EEEeCCHHHHHHHHHHcCccccCCC-----
Q 048119 31 HLPPGLRPYPVIGNLL---HKSLAKLAKIHGPIMNLRL-GVRLSFNLVT-TVVVSSPSTAKAILKEHDSLFCDRK----- 100 (266)
Q Consensus 31 ~~ppgp~~~p~~G~~~---~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~-~v~v~dp~~~~~i~~~~~~~~~~~~----- 100 (266)
..+|+|+++|+.++.. +.++.+++ +||||+++.+ ++ .+ .++++||+.+++|+.+ ..|.++.
T Consensus 8 ~~~~~~~~~p~~~~~~~~p~~~~~~l~-~~Gpv~~~~~~~g------~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~ 78 (406)
T 1s1f_A 8 QAVPPVRDWPAVDLPGSDFDPVLTELM-REGPVTRISLPNG------EGWAWLVTRHDDVRLVTND--PRFGREAVMDRQ 78 (406)
T ss_dssp CCSCCEEECCCCCCCTTCCCHHHHHHH-HHCSEEEEECSBS------BSCEEEECSHHHHHHHHTC--TTEESTTTTTTT
T ss_pred hhccCCCCCCCCcccccCchHHHHHHH-hcCCeeeeccCCC------cccEEEEcCHHHHHHHHcC--CCccCCcCCCCC
Confidence 4567887788887765 77888885 7999999996 56 55 9999999999999975 2455440
Q ss_pred -------C--CCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHH-HHH
Q 048119 101 -------H--HEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAF-NTS 170 (266)
Q Consensus 101 -------~--~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~-~~~ 170 (266)
. .+.++++.+ |+.|+++||++++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+++. .++
T Consensus 79 ~~~~~~~~~~~~~~l~~~d-g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~ 153 (406)
T 1s1f_A 79 VTRLAPHFIPARGAVGFLD-PPDHTRLRRSVAAA-FTARGVERVRERSRGMLDELVDAMLR---AGPPADLTEAVLSPFP 153 (406)
T ss_dssp BCBSSSSCSSCTTSGGGCC-TTHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTHHH
T ss_pred cccccccccccccccccCC-chHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHhhHhH
Confidence 1 156677664 99999999999976 89999999999999999999999975 245899987764 799
Q ss_pred HHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCC
Q 048119 171 INLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSK 248 (266)
Q Consensus 171 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~ 248 (266)
+|+++. +||.+.+.. +.+......+..... | + ++..+..+.+.+++.+.|+++ ...+
T Consensus 154 ~~vi~~-~~G~~~~~~--~~~~~~~~~~~~~~~--------~-----~-----~~~~~~~~~~~~~~~~~i~~r~~~~~~ 212 (406)
T 1s1f_A 154 IAVICE-LMGVPATDR--HSMHTWTQLILSSSH--------G-----A-----EVSERAKNEMNAYFSDLIGLRSDSAGE 212 (406)
T ss_dssp HHHHHH-HHTCCGGGH--HHHHHHHHHHHHHHT--------T-----C-----CCCHHHHTHHHHHHHHHHHTSCCSCCC
T ss_pred HHHHHH-HhCCCHHHH--HHHHHHHHHHHhccC--------C-----H-----HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999998 599877542 445544444433211 1 1 122334455566666666643 2356
Q ss_pred CHHHHHHhcc
Q 048119 249 DMLDTVLNII 258 (266)
Q Consensus 249 d~l~~ll~~~ 258 (266)
|+++.|++..
T Consensus 213 d~l~~ll~~~ 222 (406)
T 1s1f_A 213 DVTSLLGAAV 222 (406)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHhh
Confidence 9999999864
No 36
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.78 E-value=4.5e-18 Score=144.13 Aligned_cols=194 Identities=12% Similarity=0.160 Sum_probs=136.0
Q ss_pred CCCCCCCCCCCccccccchHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC------C--
Q 048119 29 RKHLPPGLRPYPVIGNLLHKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR------K-- 100 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~------~-- 100 (266)
+.+.+|||+. +.-.+.++.++++ |||| +.++ .+.++++||+.+++++.+. ..|+++ .
T Consensus 17 pl~~~PGp~~----~~~p~~~~~~l~~-~gpv---~~~~------~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~ 81 (411)
T 2jjn_A 17 TIDEVPGMAD----ETALLDWLGTMRE-KQPV---WQDR------YGVWHVFRHADVQTVLRDT-ATFSSDPTRVIEGAS 81 (411)
T ss_dssp CCCSCCCSSC----HHHHHHHHHHHHH-HCSE---EECT------TSCEEECSHHHHHHHHHCT-TTEESCGGGGSTTCC
T ss_pred CCCCCCCccc----ccChHHHHHHHHH-hCCc---ccCC------CCeEEECCHHHHHHHHcCc-ccccCcccccCCccc
Confidence 3777788872 2222667888876 9998 5666 6789999999999999754 356655 1
Q ss_pred CCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHh
Q 048119 101 HHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIF 179 (266)
Q Consensus 101 ~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~f 179 (266)
..+.++++. +|+.|+++||.+++. |+.++++.+.+.+.++++++++. .++++|+.+++ ..+++|+|+.+ |
T Consensus 82 ~~~~~~~~~-~g~~~~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~------~~~~~d~~~~~~~~~~~~vi~~~-f 152 (411)
T 2jjn_A 82 PTPGMIHEI-DPPEHRALRKVVSSA-FTPRTISDLEPRIRDVTRSLLAD------AGESFDLVDVLAFPLPVTIVAEL-L 152 (411)
T ss_dssp CCTTCGGGC-CTTHHHHHHHHHHHH-SCHHHHHTTHHHHHHHHHHHHHT------SCSEEEHHHHTTTHHHHHHHHHH-H
T ss_pred ccccccccC-CchHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHhc------CCCceeHHHHHHHHHHHHHHHHH-c
Confidence 234566666 499999999999966 99999999999999999999887 23479998554 68999999999 9
Q ss_pred cCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhc
Q 048119 180 SIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNI 257 (266)
Q Consensus 180 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~ 257 (266)
|.+.+..+ ++.+....+.... .|. +++ +...++..+..+.+.+++.+.|+++ +..+|+++.|+++
T Consensus 153 G~~~~~~~--~~~~~~~~~~~~~--------~~~--~~~-p~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~ 219 (411)
T 2jjn_A 153 GLPPMDHE--QFGDWSGALVDIQ--------MDD--PTD-PALAERIADVLNPLTAYLKARCAERRADPGDDLISRLVLA 219 (411)
T ss_dssp TCCSCCCS--TTCCHHHHHHHSC--------CSC--TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHC
T ss_pred CCCHHHHH--HHHHHHHHHHhcc--------Ccc--ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhc
Confidence 99876432 2333333333211 111 111 1233455666667777777777632 3457999999987
Q ss_pred cc
Q 048119 258 IQ 259 (266)
Q Consensus 258 ~~ 259 (266)
..
T Consensus 220 ~~ 221 (411)
T 2jjn_A 220 EV 221 (411)
T ss_dssp CB
T ss_pred cc
Confidence 53
No 37
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.77 E-value=3.1e-17 Score=139.28 Aligned_cols=179 Identities=14% Similarity=0.132 Sum_probs=134.3
Q ss_pred hHHHHHHHHhcCCcEEEecC-ccccCCceEEEEeCCHHHHHHHHHHcCccccCC----------C------CCCCccccc
Q 048119 47 HKSLAKLAKIHGPIMNLRLG-VRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR----------K------HHEFSLVWL 109 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~-~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~----------~------~~~~~l~~~ 109 (266)
+.++.+++++ |||++++++ + .+++++++|+.+++++.++ .|+++ . ..+.++++.
T Consensus 32 ~~~~~~l~~~-Gpv~~~~~~~g------~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (417)
T 3tyw_A 32 PAEYAALRTD-DPVARVTLPTR------REAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRT 102 (417)
T ss_dssp CTHHHHHHHT-CTEEEEECTTS------CEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGC
T ss_pred hHHHHHHHhh-CCeeeeecCCC------CCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhc
Confidence 7788999988 999999986 6 7999999999999999765 45442 1 235567666
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccH
Q 048119 110 PVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNE 188 (266)
Q Consensus 110 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~ 188 (266)
+ |+.|+++||++++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+++ ..+++++++.+ ||.+.+..
T Consensus 103 d-g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~-- 174 (417)
T 3tyw_A 103 D-APEHTRYRRMLLPA-FTVRRVRAMRPAVQARVDEILDGMLA---AGGPVDLVSAYANAVSTSVICEL-LGIPRHDL-- 174 (417)
T ss_dssp C-HHHHHHHHHHHGGG-GCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTHHHHHHHHHHHH-HTCCTTTT--
T ss_pred C-CcHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHHHHHHHh---hCCCcchHHHHHHHHHHHHHHHH-hCCCHHHH--
Confidence 5 99999999999965 99999999999999999999999976 35679999987 58999999997 99987754
Q ss_pred HHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc--CCCCCCHHHHHHhcccc
Q 048119 189 RKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI--SIKSKDMLDTVLNIIQD 260 (266)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~d~l~~ll~~~~~ 260 (266)
..+......+.. . .+ ..++..+..+.+.+++.+.+++ .+..+|+++.|++...+
T Consensus 175 ~~~~~~~~~~~~---~------~~---------~~~~~~~~~~~l~~~~~~~i~~r~~~~~~d~l~~ll~~~~~ 230 (417)
T 3tyw_A 175 EFFRDVTRISGS---R------NS---------TAEQVSEALGGLFGLLGGLVAERREEPRDDLISKLVTDHLV 230 (417)
T ss_dssp THHHHHHHHHHS---S------SS---------CTTHHHHHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc---c------cC---------CHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHhccc
Confidence 344433332211 0 01 1134455666666777766663 23457999999987543
No 38
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.77 E-value=3.2e-17 Score=137.70 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=131.5
Q ss_pred hHHHHHHHHhcCCcEEEecC----ccccCCceEEEEeCCHHHHHHHHHHcCccccCC---------CCCCCcccccCCCh
Q 048119 47 HKSLAKLAKIHGPIMNLRLG----VRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---------KHHEFSLVWLPVST 113 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~----~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---------~~~~~~l~~~~~g~ 113 (266)
+.++.++ ++||||++++.+ + .++++++||+.+++++. +...|+++ ...+.+++.. +|+
T Consensus 15 ~~~~~~l-r~yGpv~~~~~~~~~~g------~~~vvv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~-~g~ 85 (384)
T 3oo3_A 15 VPEFEEL-QKAGPLHEYDTEPGMDG------RKQWLVTGHDEVRAILA-DHERFSSMRPVDDEADRALLPGILQAY-DPP 85 (384)
T ss_dssp CHHHHHH-HHTCSEECCCCC------------CEEEECCHHHHHHHHH-CTTTEECSCCCC-----CCCTTCGGGC-CTT
T ss_pred hHHHHHH-HhcCCeeecccccccCC------CCEEEEcCHHHHHHHHh-CchhccCCccccccccccccccccccC-CCh
Confidence 6788888 599999998875 3 58999999999999994 44567665 1123344444 599
Q ss_pred hHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHHHHHhcCCccCccHHHHHH
Q 048119 114 LWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLPNTIFSIDLVHPNERKFKD 193 (266)
Q Consensus 114 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~ 193 (266)
.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+++...+.+++...+||.+.+.. +.+.+
T Consensus 86 ~~~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~v~~~~~G~~~~~~--~~~~~ 159 (384)
T 3oo3_A 86 DHTRLRRTVAPA-YSARRMERLRPRIEEIVEECLDDFES---VGAPVDFVRHAAWPIPAYIACEFLGVPRDDQ--AELSR 159 (384)
T ss_dssp HHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHHH---SCSSEEHHHHTTTHHHHHHHHHHHTCCGGGH--HHHHH
T ss_pred hHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHH
Confidence 999999999965 99999999999999999999999976 4678999999998888877788899876542 45555
Q ss_pred HHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhc
Q 048119 194 TVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNI 257 (266)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~ 257 (266)
.+..+.. . ...++..+..+.+.+++.+.++++ +..+|+++.|++.
T Consensus 160 ~~~~~~~---~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~l~~ll~~ 206 (384)
T 3oo3_A 160 MIRESRE---S----------------RLPRQRTLSGLGIVNYTKRLTSGKRRDPGDGMIGVIVRE 206 (384)
T ss_dssp HHHHHHH---C----------------SCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred HHHHHhc---c----------------CChHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 5544433 0 012344556666667777666532 3457999999986
No 39
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.76 E-value=4.5e-17 Score=137.65 Aligned_cols=178 Identities=13% Similarity=0.208 Sum_probs=130.0
Q ss_pred hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccccCC-------------C-CCCCcccccCC
Q 048119 47 HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-------------K-HHEFSLVWLPV 111 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-------------~-~~~~~l~~~~~ 111 (266)
+..+.++ ++||||+++++ |+ .+.++++||+.+++++.++ .|.++ . ..+.++++. +
T Consensus 22 ~~~~~~l-~~yGpv~~~~~~g~------~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 91 (403)
T 3aba_A 22 PDGIADI-RAAAPVTRATFTSG------HEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLWQ-D 91 (403)
T ss_dssp CTTHHHH-HHHCSEEEEECTTS------CEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTTC-C
T ss_pred hHHHHHH-HhcCCeeeeccCCC------ceEEEEcCHHHHHHHHcCC--CcccccccccccccccccccccccccccC-C
Confidence 6677888 88999999997 78 8999999999999999753 24332 1 134566666 5
Q ss_pred ChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHH-HHHHHHHHHHHhcCCccCccHHH
Q 048119 112 STLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAF-NTSINLLPNTIFSIDLVHPNERK 190 (266)
Q Consensus 112 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~~~~~ 190 (266)
|+.|+++||++++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+++. .+++++++. +||.+.+.. +.
T Consensus 92 g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~--~~ 164 (403)
T 3aba_A 92 EPEHTSDRKLLAKE-FTVRRMQALRPNIQRIVDEHLDAIEA---RGGPVDLVKTFANAVPSMVISD-LFGVPVERR--AE 164 (403)
T ss_dssp TTHHHHHHHHHHHH-SCHHHHHTTHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHHHHHHH-HHTCCGGGH--HH
T ss_pred chhHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHHHH--HH
Confidence 99999999999976 99999999999999999999999975 246799987664 799999998 699876532 33
Q ss_pred HHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 191 FKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
+......+ ... . . + + ++..+..+.+.+++.+.|+++ ...+|+++.|+++.+
T Consensus 165 ~~~~~~~~----~~~--~--~------~--p--~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~ 217 (403)
T 3aba_A 165 FQDIAEAM----MRV--D--Q------D--A--AATEAAGMRLGGLLYQLVQERRANPGDDLISALITTED 217 (403)
T ss_dssp HHHHHHHH----SBS--S--S------C--H--HHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHTSCC
T ss_pred HHHHHHHH----Hhc--c--C------c--H--HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhhcc
Confidence 43333222 110 0 0 0 1 344555666666776666632 245699999998753
No 40
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.75 E-value=9.9e-17 Score=136.83 Aligned_cols=186 Identities=8% Similarity=0.002 Sum_probs=136.9
Q ss_pred hHHHHHHHHhcCCcEEEecC-------ccccCCceEEEEeCCHHHHHHHHHHcCccccCCC---CC---------CCccc
Q 048119 47 HKSLAKLAKIHGPIMNLRLG-------VRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK---HH---------EFSLV 107 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~-------~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~---~~---------~~~l~ 107 (266)
+..+.+++ +||||+++..+ + .++++++||+.+++|+.+. ..|+++. +. +.+++
T Consensus 47 ~~~~~~l~-~~Gpv~~~~~~~~~~~~~g------~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~ 118 (435)
T 2wm5_A 47 DGAFATLR-REAPISFWPTIELPGFVAG------NGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMI 118 (435)
T ss_dssp HHHHHHHH-HHCSEEEECCCCC---CCC------CCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGG
T ss_pred hHHHHHHH-hcCCeEecccccccccCCC------CCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccc
Confidence 55777885 68999999986 6 6899999999999999864 3566551 11 34566
Q ss_pred ccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCc
Q 048119 108 WLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHP 186 (266)
Q Consensus 108 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~ 186 (266)
+. +|+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+.. +++++|+.+++ ..+++|+++.+ ||.+.+..
T Consensus 119 ~~-dg~~h~~~R~~l~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~~~-~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~~ 194 (435)
T 2wm5_A 119 VL-DDPRHQRLRSIVSRA-FTPKVVARIEAAVRDRAHRLVSSMIANN-PDRQADLVSELAGPLPLQIICDM-MGIPKADH 194 (435)
T ss_dssp GC-CTTHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEHHHHTTTHHHHHHHHHH-HTCCGGGH
T ss_pred cC-CcHHHHHHHHHhHHh-hCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcEehHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence 66 499999999999976 9999999999999999999999997642 24479999766 78999999999 99987542
Q ss_pred cHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 187 NERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
+.+.+....+.... .|. +++ ..++..+..+.+.+++.+.|+++ +..+|+++.|++...
T Consensus 195 --~~~~~~~~~~~~~~--------~p~--~~~---~~~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~ 254 (435)
T 2wm5_A 195 --QRIFHWTNVILGFG--------DPD--LAT---DFDEFMQVSADIGAYATALAEDRRVNHHDDLTSSLVEAEV 254 (435)
T ss_dssp --HHHHHHHHHHHHTT--------CTT--SCC---CHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCB
T ss_pred --HHHHHHHHHHhccC--------Ccc--hhh---hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhhhc
Confidence 45555555444321 132 112 12455566667777777777632 345799999998753
No 41
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.75 E-value=5.8e-17 Score=138.86 Aligned_cols=192 Identities=13% Similarity=0.010 Sum_probs=132.8
Q ss_pred HHHHHHHHhcCCcE--EEe-cCccccCCceEEEEeCCHHHHHHHHHHcCccccCCC---C-------------------C
Q 048119 48 KSLAKLAKIHGPIM--NLR-LGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK---H-------------------H 102 (266)
Q Consensus 48 ~~~~~~~~~yG~i~--~~~-~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~---~-------------------~ 102 (266)
..+.++ ++||||+ ++. .|+ .++++|++++.+++++++. ..|+++. . .
T Consensus 49 ~~~~~l-r~~gPV~~~~~~~~g~------~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~ 120 (450)
T 3tkt_A 49 DRFDAL-RAEAPVAKVVAPDDEH------EPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHL 120 (450)
T ss_dssp HHHHHH-HHHCSEEEECCTTCSS------CCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCS
T ss_pred HHHHHH-HhcCCeecccccCCCC------CCEEEEecHHHHHHHHhCc-ccccCCCcccccccccccccccccccccccc
Confidence 456666 6789999 888 677 8999999999999999654 5566551 1 1
Q ss_pred CCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcC
Q 048119 103 EFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSI 181 (266)
Q Consensus 103 ~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~ 181 (266)
+.+++.. +|+.|+++||++++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+++ ..+++++|+.+ ||.
T Consensus 121 ~~~l~~~-dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~~dl~~~~~~~~~~~vi~~l-~G~ 194 (450)
T 3tkt_A 121 VESLVQM-DAPKHPKLRRLTQDW-FMPKNLARLDGEIRKIANEAIDRMLG---AGEEGDFMALVAAPYPLHVVMQI-LGV 194 (450)
T ss_dssp SCCGGGC-CTTHHHHHHHHHHTT-TSHHHHGGGHHHHHHHHHHHHHHHHH---TCSEEEHHHHTTTHHHHHHHHHH-TTC
T ss_pred ccCcccC-CCHHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCEeeHHHHHHHHHHHHHHHH-cCC
Confidence 2356666 499999999999965 99999999999999999999999976 35689998887 69999999996 997
Q ss_pred CccCccHHHHHHHHHHHHHHhCCCCccchhcccccCC-CcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhcc
Q 048119 182 DLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLD-LQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNII 258 (266)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~-~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~ 258 (266)
+.+.. ..+.+....+. ........++..+++ .....++..+..+.+.+++.+.++++ +..+|+++.|++..
T Consensus 195 ~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~ 268 (450)
T 3tkt_A 195 PPEDE--PKMLFLTQQMF----GGQDEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRNPTDDVATVIANAV 268 (450)
T ss_dssp CGGGH--HHHHHHHHTTS----CCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHTCE
T ss_pred ChhHH--HHHHHHHHHHh----ccccchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcc
Confidence 65432 33433333222 111111222222221 12234566677778888888877732 34679999999875
Q ss_pred c
Q 048119 259 Q 259 (266)
Q Consensus 259 ~ 259 (266)
.
T Consensus 269 ~ 269 (450)
T 3tkt_A 269 V 269 (450)
T ss_dssp E
T ss_pred c
Confidence 4
No 42
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.75 E-value=4.8e-17 Score=137.67 Aligned_cols=177 Identities=12% Similarity=0.153 Sum_probs=124.4
Q ss_pred hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccccCC-------C---C------CCCccccc
Q 048119 47 HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-------K---H------HEFSLVWL 109 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-------~---~------~~~~l~~~ 109 (266)
+..+.+| ++||||+++++ ++ .++++++||+.+++++.++. |.++ . . .+.++++.
T Consensus 27 ~~~~~~l-~~yGpv~~~~~~g~------~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (408)
T 3abb_A 27 PKAYEER-RGESPLTQVTLFDG------RPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPLIGV 97 (408)
T ss_dssp CHHHHHH-CCSSSEEEEECTTS------CEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTTTTC
T ss_pred hHHHHHH-HhcCCeeeeecCCC------CcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCccccccccccccC
Confidence 7788899 89999999997 78 89999999999999997532 2221 0 1 12456665
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHH-HHHHHHHHHHHhcCCccCccH
Q 048119 110 PVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAF-NTSINLLPNTIFSIDLVHPNE 188 (266)
Q Consensus 110 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~~~ 188 (266)
+|+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+++. .+++++++. +||.+.+..
T Consensus 98 -~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~-- 169 (408)
T 3abb_A 98 -DDPVHARQRRMLIPS-FGVKRMNAIRPRLQSLVDRLLDDMLA---KGPGADLVSAFALPVPSVAICE-LLGVPYGDH-- 169 (408)
T ss_dssp -CTTHHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHHH---TCSCEEHHHHTTTHHHHHHHHH-HHTCCGGGH--
T ss_pred -CchHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHH-HhCCCHHHH--
Confidence 599999999999976 99999999999999999999999974 456899998886 599999997 699876432
Q ss_pred HHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 189 RKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
+.+...+..+... . .+ ++..+..+.+.+++.+.|+++ ...+|+++.|+++.+
T Consensus 170 ~~~~~~~~~~~~~------~--~~-----------~~~~~~~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~ 223 (408)
T 3abb_A 170 DFFEECSRNFVGA------A--TS-----------AEADAAFGELYTYLHGLVGRKQAEPEDGLLDELIARQL 223 (408)
T ss_dssp HHHHHHHHHHC-------------------------CCSSHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc------c--ch-----------HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhccc
Confidence 3444443332110 0 01 112223334444444444421 234799999998643
No 43
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.74 E-value=6.4e-17 Score=137.17 Aligned_cols=195 Identities=10% Similarity=-0.009 Sum_probs=135.7
Q ss_pred CCCCCCCCCCCCCccc--ccc--------c---hHHHHHHHHhcC--CcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 27 GRRKHLPPGLRPYPVI--GNL--------L---HKSLAKLAKIHG--PIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 27 ~~~~~~ppgp~~~p~~--G~~--------~---~~~~~~~~~~yG--~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.++.+.||||++.|.. +.+ . +.++.+|+ +|| ||+++...+ +.++++||+.+++++.+
T Consensus 7 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g-------~~vvv~~~~~v~~vl~~ 78 (415)
T 2zwu_A 7 QSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG-------GHWIATRGQLIREAYED 78 (415)
T ss_dssp ----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG-------CEEEECSHHHHHHHHHC
T ss_pred cCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC-------CeEEEcCHHHHHHHHcC
Confidence 3457889999988864 321 1 56778885 799 999887333 37999999999999964
Q ss_pred cCccccCCC--C------CCCc-ccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccH
Q 048119 92 HDSLFCDRK--H------HEFS-LVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDF 162 (266)
Q Consensus 92 ~~~~~~~~~--~------~~~~-l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~ 162 (266)
...|+++. + .+.+ +++.+ |+.|+++||.+++. |+..+++.+.+.+.++++++++.|.+. +++|+
T Consensus 79 -~~~f~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l~~~----~~~d~ 151 (415)
T 2zwu_A 79 -YRHFSSECPFIPREAGEAYDFIPTSMD-PPEQRQFRALANQV-VGMPVVDKLENRIQELACSLIESLRPQ----GQCNF 151 (415)
T ss_dssp -TTTEETTSCSSSHHHHHHCCCTTTTCC-TTTTHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHHHGGG----TEEEH
T ss_pred -ccccCCCcccCCCCccccccccCccCC-CcHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccH
Confidence 44566552 1 1455 76664 99999999999966 899999999999999999999998652 37999
Q ss_pred HHHH-HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhh
Q 048119 163 GQAA-FNTSINLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGC 241 (266)
Q Consensus 163 ~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i 241 (266)
.+++ ..+++++++.+ ||.+.+.. +.+.+....+.. . . . |. +..+..+.+.+++.+.|
T Consensus 152 ~~~~~~~~~~~vi~~~-~G~~~~~~--~~~~~~~~~~~~---~---~--~------P~-----~~~~~~~~~~~~~~~~i 209 (415)
T 2zwu_A 152 TEDYAEPFPIRIFMLL-AGLPEEDI--PHLKYLTDQMTR---P---D--G------SM-----TFAEAKEALYDYLIPII 209 (415)
T ss_dssp HHHTTTHHHHHHHHHH-HTCCGGGH--HHHHHHHHHHHS---C---C--S------SS-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHH--HHHHHHHHHHHh---c---c--C------HH-----HHHHHHHHHHHHHHHHH
Confidence 9865 78999999999 99987542 445444433321 1 0 1 21 22334444555555555
Q ss_pred hcC--CCCCCHHHHHHhcc
Q 048119 242 SIS--IKSKDMLDTVLNII 258 (266)
Q Consensus 242 ~~~--~~~~d~l~~ll~~~ 258 (266)
+++ +..+|+++.|++..
T Consensus 210 ~~r~~~~~~dll~~ll~~~ 228 (415)
T 2zwu_A 210 EQRRQKPGTDAISIVANGQ 228 (415)
T ss_dssp HHHHHSCCSSHHHHHHTCE
T ss_pred HHHHhCCCCCHHHHHHHhh
Confidence 422 34579999999864
No 44
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.73 E-value=1.2e-17 Score=144.71 Aligned_cols=151 Identities=10% Similarity=0.131 Sum_probs=116.7
Q ss_pred CCCCCCCCCCCCccccccc-----------hHHHHHHHHhcCC-cEEEecCccccCCceEE-------EEeCCHHHHHHH
Q 048119 28 RRKHLPPGLRPYPVIGNLL-----------HKSLAKLAKIHGP-IMNLRLGVRLSFNLVTT-------VVVSSPSTAKAI 88 (266)
Q Consensus 28 ~~~~~ppgp~~~p~~G~~~-----------~~~~~~~~~~yG~-i~~~~~~~~~~~~~~~~-------v~v~dp~~~~~i 88 (266)
.+.+.||||++||++|+++ +.++.+++++||+ ||++++++ .++ +++++++..+.+
T Consensus 25 ~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~------~~~vv~~p~~v~~~~~~~~~~l 98 (495)
T 3dsk_A 25 LPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPP------GAFIAENPQVVALLDGKSFPVL 98 (495)
T ss_dssp CCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSC------CTTTCSCCEEEEECSTTTGGGG
T ss_pred CCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCC------CCCccCCCCEEEEeCCcceeee
Confidence 4577899999999999985 5689999999999 99999988 666 677888877666
Q ss_pred HHHcC----ccc----cCC--CCCC--CcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhC
Q 048119 89 LKEHD----SLF----CDR--KHHE--FSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRA 156 (266)
Q Consensus 89 ~~~~~----~~~----~~~--~~~~--~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 156 (266)
+.... ..+ ... .+++ ...+...+|+.|+++|+++++. |+... +.+.+.+.+.++++++.|.+....
T Consensus 99 ~~~~~v~k~~~~~~~~~~~~~l~g~~~~~~~~~~~g~~h~~~R~~~~~~-f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~ 176 (495)
T 3dsk_A 99 FDVDKVEKKDLLTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFL-LKSSR-NRIFPEFQATYSELFDSLEKELSL 176 (495)
T ss_dssp GCTTTEECSSCTTSSSCCCGGGGTTCCCGGGCCTTSHHHHHHHHHHHHH-HHHTT-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCccccCCCcceeeeCCCchHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 64311 111 111 1211 2223333599999999999966 77744 889999999999999999775444
Q ss_pred CccccHHHHHHHHHHHHHHHHHhcCCccCc
Q 048119 157 GKAIDFGQAAFNTSINLLPNTIFSIDLVHP 186 (266)
Q Consensus 157 ~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~ 186 (266)
++++|+.+++..+++++++.++||.+.+..
T Consensus 177 ~~~vdl~~~~~~~~~~~i~~~~~G~~~~~~ 206 (495)
T 3dsk_A 177 KGKADFGGSSDGTAFNFLARAFYGTNPADT 206 (495)
T ss_dssp HSSEESHHHHHHHHHHHHHHHHHSCCGGGS
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 568999999999999999999999987654
No 45
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.73 E-value=3e-16 Score=133.80 Aligned_cols=198 Identities=10% Similarity=0.105 Sum_probs=133.4
Q ss_pred CCCCCCCCCCccccccc------hHHHHHHHHhcCCcEEEe--------cCccccCCceEEEEeCCHHHHHHHHHHcCcc
Q 048119 30 KHLPPGLRPYPVIGNLL------HKSLAKLAKIHGPIMNLR--------LGVRLSFNLVTTVVVSSPSTAKAILKEHDSL 95 (266)
Q Consensus 30 ~~~ppgp~~~p~~G~~~------~~~~~~~~~~yG~i~~~~--------~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~ 95 (266)
...||+|.+.++++... +.++.++ ++||||+++. +|+ .++++|++|+.+++++.+ ...
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~------~~~~vv~~~~~v~~vl~~-~~~ 88 (433)
T 3ivy_A 17 VPSPNLPPGFDFTDPAIYAERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHD------GGFWAITKLNDVKEISRH-SDV 88 (433)
T ss_dssp ---CCCCTTCCTTCHHHHTTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCS------SEEEEECSHHHHHHHHHC-TTT
T ss_pred cCCCCCCCCCCCCCHHHhhcCCccHHHHHH-HhcCCEEecccccccccccCC------CCEEEEecHHHHHHHHcC-hhh
Confidence 44567777676665432 6678888 7899999998 565 689999999999999964 345
Q ss_pred ccCC---C--------------CCCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCc
Q 048119 96 FCDR---K--------------HHEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGK 158 (266)
Q Consensus 96 ~~~~---~--------------~~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (266)
|+++ . ..+.+++.. +|+.|+++||++++. |+.++++.+.+.+.++++++++.|.+ ++
T Consensus 89 fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~----~~ 162 (433)
T 3ivy_A 89 FSSYENGVIPRFKNDIAREDIEVQRFVMLNM-DAPHHTRLRKIISRG-FTPRAVGRLHDELQERAQKIAAEAAA----AG 162 (433)
T ss_dssp EESTTTCSCCCCCTTCCHHHHHGGGGSGGGC-CTTHHHHHHHHHGGG-SCHHHHHTTHHHHHHHHHHHHHHHHH----HC
T ss_pred ccCCcccccccccccccccccccccCCcccc-ChHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHhh----CC
Confidence 6654 1 113466656 599999999999965 99999999999999999999999974 24
Q ss_pred cccHHHHH-HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHH
Q 048119 159 AIDFGQAA-FNTSINLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQ 237 (266)
Q Consensus 159 ~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~ 237 (266)
++|+.+++ ..+++++|+.+ ||.+.+. ...+ ......+.. ...|.... .+..+..+.+.+++
T Consensus 163 ~~d~~~~~~~~~~~~vi~~l-~G~~~~~--~~~~----~~~~~~~~~----~~~p~~~~-------~~~~~~~~~~~~~~ 224 (433)
T 3ivy_A 163 SGDFVEQVSCELPLQAIAGL-LGVPQED--RGKL----FHWSNEMTG----NEDPEYAH-------IDPKASSAELIGYA 224 (433)
T ss_dssp EEEHHHHTTSHHHHHHHHHH-HTCCHHH--HHHH----HHHHTTCSC----CCCGGGTT-------CCHHHHHHHHHHHH
T ss_pred CeeHHHHHHHHHHHHHHHHH-cCCCHHH--HHHH----HHHHHHHhc----cCCchhhh-------HHHHHHHHHHHHHH
Confidence 68998887 99999999996 9964321 1122 222111111 11222110 13345566677777
Q ss_pred hhhhhcC--CCCCCHHHHHHhccc
Q 048119 238 EHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 238 ~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
.+.|+++ +..+|+++.|++...
T Consensus 225 ~~~i~~r~~~~~~dll~~ll~~~~ 248 (433)
T 3ivy_A 225 MKMAEEKAKNPADDIVTQLIQADI 248 (433)
T ss_dssp HHHHHHC-------CHHHHHSCC-
T ss_pred HHHHHHHhcCCCCcHHHHHHhhhc
Confidence 7777643 345799999998754
No 46
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.73 E-value=1.4e-16 Score=134.71 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=131.7
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCCC-------------CCCCcccccCCCh
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK-------------HHEFSLVWLPVST 113 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~-------------~~~~~l~~~~~g~ 113 (266)
+..+.++ ++||||++++.++ .+++++++|+.+++++.++ ..|+++. ..+.++++.+ |+
T Consensus 16 ~~~~~~~-r~yGpv~~~~~~~------~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~ 86 (404)
T 3ejb_B 16 YSFYDTL-RAVHPIYKGSFLK------YPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMMLFQN-QP 86 (404)
T ss_dssp HHHHHHH-HHHCSEEEEEETT------EEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSGGGCC-TT
T ss_pred hHHHHHH-HhhCCEeeccCCC------CCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcchhhcC-Cc
Confidence 5667777 5899999999999 9999999999999999865 4565541 1245666664 99
Q ss_pred hHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccHHHHH
Q 048119 114 LWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNERKFK 192 (266)
Q Consensus 114 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~ 192 (266)
.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ ++.+|+..++ ..+++++++.+ ||.+.+.. +.+.
T Consensus 87 ~h~~~Rr~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~--~~~~ 158 (404)
T 3ejb_B 87 DHRRLRTLASGA-FTPRTTESYQPYIIETVHHLLDQVQG----KKKMEVISDFAFPLASFVIANI-IGVPEEDR--EQLK 158 (404)
T ss_dssp HHHHHHHHHHGG-GSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTHHHHHHHHHHHH-HTCCGGGH--HHHH
T ss_pred hHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcchHHHHHHHHHHHHHHHH-cCCCHHHH--HHHH
Confidence 999999999966 99999999999999999999998854 3578976554 56999999995 89876532 4444
Q ss_pred HHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc--CCCCCCHHHHHH
Q 048119 193 DTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI--SIKSKDMLDTVL 255 (266)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~d~l~~ll 255 (266)
+....+...... |. .....++..+..+.+.+++.+.+++ ....+|+++.|+
T Consensus 159 ~~~~~~~~~~~~-------p~-----~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~l~~ll 211 (404)
T 3ejb_B 159 EWAASLIQTIDF-------TR-----SRKALTEGNIMAVQAMAYFKELIQKRKRHPQQDMISMLL 211 (404)
T ss_dssp HHHHHHHGGGST-------TC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHH
T ss_pred HHHHHHHHhccC-------CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence 444433322211 21 1122345566777777777777763 245679999999
No 47
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.73 E-value=6.1e-17 Score=137.05 Aligned_cols=180 Identities=18% Similarity=0.242 Sum_probs=131.1
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC-----C----------C----CCCccc
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-----K----------H----HEFSLV 107 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-----~----------~----~~~~l~ 107 (266)
+..+.++ ++||||+++++++ .++++++||+.+++|+.++. ++++ . . .+.+++
T Consensus 18 ~~~~~~l-~~yGpv~~~~~~~------~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (408)
T 1odo_A 18 HTEHRTL-REGGPATWVDVLG------VQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENMF 88 (408)
T ss_dssp HHHHHHH-HTTCSEEEEEETT------EEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSGG
T ss_pred HHHHHHH-HHhCCeEEeccCC------CCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccccc
Confidence 7788899 9999999999888 89999999999999997542 2211 0 0 235666
Q ss_pred ccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHH-HHHHHHHHHHHhcCCccCc
Q 048119 108 WLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAF-NTSINLLPNTIFSIDLVHP 186 (266)
Q Consensus 108 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~ 186 (266)
+. +|+.|+++||.+++. |+..+++.+.+.+.++++++++.|.+.. +++++|+.+++. .+++|+|+. +||.+.+..
T Consensus 89 ~~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~ 164 (408)
T 1odo_A 89 TA-YGPNHRKLRRLVAPA-FSARRVDAMRPAVEAMVTGLVDRLAELP-AGEPVDLRQELAYPLPIAVIGH-LMGVPQDRR 164 (408)
T ss_dssp GC-CHHHHHHHHHTTGGG-GSHHHHHHHHHHHHHHHHHHHHHHHHSC-TTSCEEHHHHTTTHHHHHHHHH-HHTCCHHHH
T ss_pred cc-CChHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcchHHHHhhhhHHHHHHH-HhCCCHHHH
Confidence 55 599999999999965 9999999999999999999999997642 356899998887 599999996 699875421
Q ss_pred cHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 187 NERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
+.+...+..+.. . ..+ .++..+..+.+.+++.+.|+++ ...+|+++.|+++.+
T Consensus 165 --~~~~~~~~~~~~---~-----------~~~----~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~ 219 (408)
T 1odo_A 165 --DGFRALVDGVFD---T-----------TLD----QAEAQANTARLYEVLDQLIAAKRATPGDDMTSLLIAARD 219 (408)
T ss_dssp --HHHHHHHHHHHC---T-----------TCC----HHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHC
T ss_pred --HHHHHHHHHHhc---c-----------cCC----HHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHhcc
Confidence 334443333221 0 011 1344555666666777666632 345799999998653
No 48
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.71 E-value=3.1e-16 Score=133.35 Aligned_cols=184 Identities=13% Similarity=0.063 Sum_probs=132.3
Q ss_pred hHHHHHHHHhcCCcEEEecC--ccccCCceEEEEeCCHHHHHHHHHHcCccccCCC-----------------------C
Q 048119 47 HKSLAKLAKIHGPIMNLRLG--VRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK-----------------------H 101 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~--~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~-----------------------~ 101 (266)
+.++.+++ +||||+++++| + .++++++||+.+++|+.++ .|+++. +
T Consensus 23 ~~~~~~l~-~~Gpv~~~~~g~~~------~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (425)
T 2z3t_A 23 YPVYRRYR-EAAPVHRTASGPGK------PDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTV 93 (425)
T ss_dssp HHHHHHHH-HHCSEEEECCCSSC------CCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHH
T ss_pred HHHHHHHH-hcCCeEeccccCCC------CCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccc
Confidence 66778876 49999999987 7 7899999999999999753 465541 1
Q ss_pred CCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhc
Q 048119 102 HEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFS 180 (266)
Q Consensus 102 ~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG 180 (266)
.+.++++.+ |+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ .| ++|+.+++ ..+++|+|+.+ ||
T Consensus 94 ~~~~l~~~d-g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~---~g-~~dl~~~~~~~~~~~vi~~~-~G 166 (425)
T 2z3t_A 94 VENWLVFLD-PPHHTELRSLLTTE-FSPSIVTGLRPRIAELASALLDRLRA---QR-RPDLVEGFAAPLPILVISAL-LG 166 (425)
T ss_dssp HTTCGGGCC-HHHHHHHHHHHHGG-GSHHHHHHHHHHHHHHHHHHHHHHTT---SS-SCBHHHHTTTHHHHHHHHHH-HT
T ss_pred cccccccCC-chHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHHh---cC-CccHHHHHHHHHHHHHHHHH-hC
Confidence 125666665 99999999999966 99999999999999999999999864 23 79998755 78999999998 99
Q ss_pred CCccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhcc
Q 048119 181 IDLVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNII 258 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~ 258 (266)
.+.+.. +.+......+... .+.+| ++ +...++..+..+.+.+++.+.|+++ +..+|+++.|++..
T Consensus 167 ~~~~~~--~~~~~~~~~~~~~------~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~ 233 (425)
T 2z3t_A 167 IPEEDH--TWLRANAVALQEA------STTRA----RD-GRGYARAEAASQEFTRYFRREVDRRGGDDRDDLLTLLVRAR 233 (425)
T ss_dssp CCGGGH--HHHHHHHHHHHTT------CTTCC----C----HHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHH
T ss_pred CCHHHH--HHHHHHHHHHHhh------ccccC----CC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhh
Confidence 887532 4444444333221 11112 11 1223556677778888888888754 23579999999864
Q ss_pred c
Q 048119 259 Q 259 (266)
Q Consensus 259 ~ 259 (266)
+
T Consensus 234 ~ 234 (425)
T 2z3t_A 234 D 234 (425)
T ss_dssp H
T ss_pred c
Confidence 3
No 49
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.71 E-value=1.3e-16 Score=134.50 Aligned_cols=177 Identities=13% Similarity=0.114 Sum_probs=128.5
Q ss_pred hHHHHHHHHhc--CCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---------CCCCCcccccCCChhH
Q 048119 47 HKSLAKLAKIH--GPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---------KHHEFSLVWLPVSTLW 115 (266)
Q Consensus 47 ~~~~~~~~~~y--G~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---------~~~~~~l~~~~~g~~w 115 (266)
+.++.+|+++| |||+++..++ . .++++||+.+++++. +...|.++ ..++.+++.. +|+.|
T Consensus 22 ~~~~~~l~~~Y~~Gpv~~~~~~~------~-~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 92 (398)
T 4fb2_A 22 HAFFEALRDEAETTPIGWSEAYG------G-HWVVAGYKEIQAVIQ-NTKAFSNKGVTFPRYETGEFELMMAGQ-DDPVH 92 (398)
T ss_dssp HHHHHHHHHHHTTCSEEEECGGG------C-EEEECSHHHHHHHHT-CCSSEEGGGCSSSCC----CCCTTTTC-CTTHH
T ss_pred hHHHHHHHhcCCCCCeEEecCCC------C-EEEEccHHHHHHHHh-ChhhccCCcccccCCCCcccccCcccC-CchHH
Confidence 78899999999 9999998876 4 899999999999994 44566655 1112334444 59999
Q ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccHHHHHHH
Q 048119 116 RSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNERKFKDT 194 (266)
Q Consensus 116 ~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~ 194 (266)
+++||.+++. |+.++++.+.+.+.++++++++.|.+ ++.+|+..++ ..+++++++. +||.+.+.. +.+.+.
T Consensus 93 ~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~--~~~~~~ 164 (398)
T 4fb2_A 93 KKYRQLVAKP-FSPEATDLFTEQLRQSTNDLIDARIE----LGEGDAATWLANEIPARLTAI-LLGLPPEDG--DTYRRW 164 (398)
T ss_dssp HHHHHHHHTT-TCHHHHHTTHHHHHHHHHHHHHTTTT----TTEEEHCCCCCTTHHHHHHHH-HTTSCGGGH--HHHHHH
T ss_pred HHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHHHHH-HcCCCHHHH--HHHHHH
Confidence 9999999965 99999999999999999999998854 2358875554 6899999999 699876432 445444
Q ss_pred HHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 195 VWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
+..+.. +. ..++..+..+.+.+++.+.++++ +..+|+++.|++...
T Consensus 165 ~~~~~~-----------~~--------~~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~ 212 (398)
T 4fb2_A 165 VWAITH-----------VE--------NPEEGAEIFAELVAHARTLIAERRTNPGNDIMSRVIMSKI 212 (398)
T ss_dssp HHHHHH-----------CC--------CHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCB
T ss_pred HHHHhc-----------CC--------CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHccc
Confidence 444432 10 01244455556666666666532 345799999998754
No 50
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.71 E-value=2.9e-16 Score=133.27 Aligned_cols=179 Identities=9% Similarity=0.094 Sum_probs=130.0
Q ss_pred hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccccCC-----------C-CCCCcccccCCCh
Q 048119 47 HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-----------K-HHEFSLVWLPVST 113 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-----------~-~~~~~l~~~~~g~ 113 (266)
+.++.++ ++||||+++++ ++ .+.++++||+.+++|+.++ .|.++ . ..+.++++. +|+
T Consensus 40 ~~~~~~l-~~yGpv~~~~~~g~------~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~-dg~ 109 (417)
T 2y5n_A 40 AGRYGEL-QETEPVSRVRPPYG------EEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLSM-DPP 109 (417)
T ss_dssp CHHHHHH-HHHCSEEEEECSBS------CCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGGC-CTT
T ss_pred hHHHHHH-HhcCCeEeeccCCC------ceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCccC-Cch
Confidence 7788899 89999999997 78 8999999999999999753 24332 1 135567666 599
Q ss_pred hHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHH-HHHHHHHHHHHhcCCccCccHHHHH
Q 048119 114 LWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAF-NTSINLLPNTIFSIDLVHPNERKFK 192 (266)
Q Consensus 114 ~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~~~~~~~ 192 (266)
.|+++||.++++ |+.++++.+.+.+.++++++++.|.+ ++.++|+.+++. .+++++|+. +||.+.+.. +.+.
T Consensus 110 ~h~~~R~~l~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~vdl~~~~~~~~~~~vi~~-~~G~~~~~~--~~~~ 182 (417)
T 2y5n_A 110 EHSRLRRLVVKA-FTARRAESLRPRAREIAHELVDQMAA---TGQPADLVAMFARQLPVRVICE-LLGVPSADH--DRFT 182 (417)
T ss_dssp HHHHHHHHHHHH-SCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGGGH--HHHH
T ss_pred HHHHHHHHHhhh-cCHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeeHHHHHHHHhHHHHHHH-HcCCCHHHH--HHHH
Confidence 999999999976 99999999999999999999999974 223799987764 699999998 699876432 3333
Q ss_pred HHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 193 DTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
.... .+.. .+. .| .++..+..+.+.+++.+.|+++ ...+|+++.|+++.+
T Consensus 183 ~~~~----~~~~-----~~~----~~----~~~~~~~~~~l~~~~~~~i~~r~~~~~~dll~~ll~~~~ 234 (417)
T 2y5n_A 183 RWSG----AFLS-----TAE----VT----AEEMQEAAEQAYAYMGDLIDRRRKEPTDDLVSALVQARD 234 (417)
T ss_dssp HHHH----TTST-----TCC----CC----HHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCB
T ss_pred HHHH----HHhc-----ccC----CC----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhhhc
Confidence 3222 1111 000 11 1345556666677777766632 245799999998753
No 51
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.71 E-value=2.4e-16 Score=133.50 Aligned_cols=176 Identities=11% Similarity=0.166 Sum_probs=127.6
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---C-----------CCCCcccccCCC
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---K-----------HHEFSLVWLPVS 112 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---~-----------~~~~~l~~~~~g 112 (266)
+.++.++ ++|||++++++++ .+.++++||+.+++++.++. |+++ . ..+.++++. +|
T Consensus 23 ~~~~~~l-~~yGpv~~~~~~~------~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g 92 (411)
T 3a4g_A 23 HPAYAAL-RAEDPVRKLALPD------GPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMMILM-DP 92 (411)
T ss_dssp HHHHHHH-HHHCSEEEEEETT------EEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCGGGC-CT
T ss_pred hHHHHHH-HhcCCeeeccCCC------CCEEEEecHHHHHHHHhCCC--cccccccccccccccccCcccccccccC-Cc
Confidence 7788888 8999999999988 89999999999999997542 5443 1 124566666 59
Q ss_pred hhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHH-HHHHHHHHHHHHHhcCCccCccHHHH
Q 048119 113 TLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQA-AFNTSINLLPNTIFSIDLVHPNERKF 191 (266)
Q Consensus 113 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~ 191 (266)
+.|+++||+++++ |+.++++.+.+.+.++++++++.|.+ ++++|+.+. ...+++|+|+.+ ||.+.+.. +.+
T Consensus 93 ~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~~--~~~ 164 (411)
T 3a4g_A 93 PDHTRLRKLVGRS-FTVRRMNELEPRITEIADGLLAGLPT----DGPVDLMREYAFQIPVQVICEL-LGVPAEDR--DDF 164 (411)
T ss_dssp THHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHSCS----SSCEEHHHHTTTTHHHHHHHHH-HTCCGGGH--HHH
T ss_pred hHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHHhHHHHHHHH-hCCCHHHH--HHH
Confidence 9999999999976 99999999999999999999998853 257999755 468999999975 99877532 344
Q ss_pred HHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 192 KDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
......+. . ..| | ++..+..+.+.+++.+.|+++ ...+|+++.|+++.+
T Consensus 165 ~~~~~~~~----~-----~~p-----~-----~~~~~~~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~ 215 (411)
T 3a4g_A 165 SAWSSVLV----D-----DSP-----A-----DDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSD 215 (411)
T ss_dssp HHHHHHHT----T-----SSC-----T-----TTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCC
T ss_pred HHHHHHHh----c-----cCC-----H-----HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhc
Confidence 44333221 1 012 1 123344455555555555522 245699999998754
No 52
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.71 E-value=3e-16 Score=133.01 Aligned_cols=177 Identities=12% Similarity=0.092 Sum_probs=128.7
Q ss_pred hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccccCCC----C--------------CCCc-c
Q 048119 47 HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK----H--------------HEFS-L 106 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~----~--------------~~~~-l 106 (266)
+.++.+|+ +||||+++++ |+ .++++++||+.+++++.++ .|.++. + .+.+ +
T Consensus 25 ~~~~~~l~-~~Gpv~~~~~~g~------~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (413)
T 2z36_A 25 PAAYERLR-ERAPINKVRLTSG------GQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLM 95 (413)
T ss_dssp CHHHHHHH-HHCSEEEEEETTS------CEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCG
T ss_pred hHHHHHHH-HcCCeeEeecCCC------ceEEEEecHHHHHHHHcCC--CcccCccccCccccccccccccccccccccc
Confidence 77888887 7899999997 78 8999999999999999753 354431 1 2556 6
Q ss_pred cccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHH-HHHHHHHHHHHhcCCccC
Q 048119 107 VWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAF-NTSINLLPNTIFSIDLVH 185 (266)
Q Consensus 107 ~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~ 185 (266)
++. +|+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+. .++++|+.+.+. .+++++++.+ ||.+.+.
T Consensus 96 ~~~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~ 170 (413)
T 2z36_A 96 LGM-DGAEHSAARRPVIGE-FTVKRLAALRPRIQDIVDHFIDDMLAT--DQRPVDLVQALSLPVPSLVICEL-LGVPYTD 170 (413)
T ss_dssp GGC-CHHHHHHHHHHHHGG-GSHHHHHHHHHHHHHHHHHHHHHHTTC--SCSSEEHHHHTTTHHHHHHHHHH-HTCCGGG
T ss_pred ccc-CchHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccHHHHHhhhhHHHHHHHH-hCCCHHH
Confidence 666 599999999999976 999999999999999999999998642 256899987665 6999999995 9987653
Q ss_pred ccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhcc
Q 048119 186 PNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNII 258 (266)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~ 258 (266)
. +.+..... .+.. . . .+ ++..+..+.+.+++.+.++++ ...+|+++.|+++.
T Consensus 171 ~--~~~~~~~~----~~~~-----~------~-~~---~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~ 224 (413)
T 2z36_A 171 H--DFFQSRTT----MMVS-----R------T-SM---EDRRRAFAELRAYIDDLITRKESEPGDDLFSRQIARQ 224 (413)
T ss_dssp H--HHHHHHHH----HTTC-----S------S-CH---HHHHHHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred H--HHHHHHHH----HHhc-----c------c-Cc---HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhh
Confidence 2 33332222 1111 0 0 01 344555666667777666632 34579999999864
No 53
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.70 E-value=3.2e-16 Score=132.43 Aligned_cols=176 Identities=14% Similarity=0.152 Sum_probs=131.1
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCCCC-----------------------CC
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRKH-----------------------HE 103 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~~-----------------------~~ 103 (266)
+..+.++ ++||||+++++++ .+.+++++|+.+++++.++ .|+++.. .+
T Consensus 17 ~~~~~~l-~~yGpv~~~~~~~------~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (404)
T 1z8o_A 17 YRTYAEL-RETAPVTPVRFLG------QDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFA 87 (404)
T ss_dssp HHHHHHH-HHHCSEEEEEETT------EEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHS
T ss_pred HHHHHHH-HhcCCeeeecCCC------ceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcc
Confidence 6778888 8999999999988 8999999999999999764 3544310 13
Q ss_pred CcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCC
Q 048119 104 FSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSID 182 (266)
Q Consensus 104 ~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~ 182 (266)
.++++. +|+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ ++++|+.+.+ ..+++++|+.+ ||.+
T Consensus 88 ~~l~~~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~ 160 (404)
T 1z8o_A 88 TNMGTS-DPPTHTRLRKLVSQE-FTVRRVEAMRPRVEQITAELLDEVGD----SGVVDIVDRFAHPLPIKVICEL-LGVD 160 (404)
T ss_dssp SSGGGC-CTTHHHHHHHHHHTT-SCHHHHHHTHHHHHHHHHHHHHTSCS----SSEEEHHHHTTTHHHHHHHHHH-TTCC
T ss_pred cccccC-CCcHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHhhhh----cCCcchHHHHhHHHHHHHHHHH-hCCC
Confidence 455555 599999999999966 99999999999999999999998853 4589998765 68999999985 9987
Q ss_pred ccCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhc
Q 048119 183 LVHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNI 257 (266)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~ 257 (266)
.+.. +.+...+..+.. . .| | . .++..+..+.+.+++.+.|+++ ...+|+++.|++.
T Consensus 161 ~~~~--~~~~~~~~~~~~----~-----~~-----p--~-~~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~ 218 (404)
T 1z8o_A 161 EKYR--GEFGRWSSEILV----M-----DP-----E--R-AEQRGQAAREVVNFILDLVERRRTEPGDDLLSALIRV 218 (404)
T ss_dssp GGGT--TTHHHHHHHHHC----C-----CG-----G--G-HHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHC
T ss_pred HHHH--HHHHHHHHHHhc----c-----CC-----h--h-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhh
Confidence 7543 334444433322 0 01 1 1 3455566667777777777632 3457999999987
No 54
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.69 E-value=6.5e-16 Score=130.32 Aligned_cols=181 Identities=10% Similarity=0.063 Sum_probs=131.7
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC------CCCCCcccccCCChhHHHHHH
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR------KHHEFSLVWLPVSTLWRSYRK 120 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~------~~~~~~l~~~~~g~~w~~~Rk 120 (266)
+.++.++++ ||||+++. .+.++++||+.+++++.+.. .|+++ ...+.++++.+ |+.|+++||
T Consensus 21 ~~~~~~l~~-~Gpv~~~~---------~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~l~~~~-g~~h~~~R~ 88 (398)
T 2xkr_A 21 RAAYRWMRA-NQPVFRDR---------NGLAAASTYQAVIDAERQPE-LFSNAGGIRPDQPALPMMIDMD-DPAHLLRRK 88 (398)
T ss_dssp HHHHHHHHH-HCSEEECT---------TCCEEECSHHHHHHHHTCTT-TEESTTCSSTTSCCCSSGGGCC-TTHHHHHHH
T ss_pred hHHHHHHHh-cCCeeecC---------CCeEEEecHHHHHHHHhCcc-cccCccccCCcccccccccccC-chHHHHHHH
Confidence 667888877 99998653 35799999999999997543 56654 12356676664 999999999
Q ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHH-HHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHH
Q 048119 121 MCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQA-AFNTSINLLPNTIFSIDLVHPNERKFKDTVWGMM 199 (266)
Q Consensus 121 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 199 (266)
.+++. |+..+++.+.+.+.++++++++.|.+ ++++|+.+. +..+++|+|+.+ ||.+.+.. +.+.+....+.
T Consensus 89 ~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~--~~~~~~~~~~~ 160 (398)
T 2xkr_A 89 LVNAG-FTRKRVKDKEASIAALCDTLIDAVCE----RGECDFVRDLAAPLPMAVIGDM-LGVRPEQR--DMFLRWSDDLV 160 (398)
T ss_dssp HHGGG-SCHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTHHHHHHHHHH-HTCCGGGH--HHHHHHHHHHH
T ss_pred Hhhhh-hCHHHHHHHHHHHHHHHHHHHHhhhh----cCCccHHHHHHHHHHHHHHHHH-hCCCHHHH--HHHHHHHHHHH
Confidence 99965 99999999999999999999999854 237999854 568999999999 99987532 45555555444
Q ss_pred HHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 200 EEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 200 ~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
.... |. ++| ...++..+..+.+.+++.+.|+++ +..+|+++.|++...
T Consensus 161 ~~~~--------~~--~~p--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~ 210 (398)
T 2xkr_A 161 TFLS--------SH--VSQ--EDFQITMDAFAAYNDFTRATIAARRADPTDDLVSVLVSSEV 210 (398)
T ss_dssp HHHT--------SC--CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCB
T ss_pred hccC--------cc--cch--hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhc
Confidence 3321 11 122 223455566667777777777632 345799999998754
No 55
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.69 E-value=1.8e-16 Score=136.47 Aligned_cols=156 Identities=8% Similarity=0.052 Sum_probs=113.3
Q ss_pred CCCCCCCCCCCccccccc------------hHHHHHHHHhcCC-cEEEecCcccc-CCceEEEEeCCHHHHHHHHHH---
Q 048119 29 RKHLPPGLRPYPVIGNLL------------HKSLAKLAKIHGP-IMNLRLGVRLS-FNLVTTVVVSSPSTAKAILKE--- 91 (266)
Q Consensus 29 ~~~~ppgp~~~p~~G~~~------------~~~~~~~~~~yG~-i~~~~~~~~~~-~~~~~~v~v~dp~~~~~i~~~--- 91 (266)
+.+.+|||++||++|++. +.++.+++++||| ||++++++.-. .-....|++++++..+.++..
T Consensus 7 Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~ 86 (473)
T 3dan_A 7 PLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKV 86 (473)
T ss_dssp CBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcce
Confidence 577889999999999986 2377888999999 99999863000 000455666777665555531
Q ss_pred -cCccccCC------CCCC--CcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccH
Q 048119 92 -HDSLFCDR------KHHE--FSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDF 162 (266)
Q Consensus 92 -~~~~~~~~------~~~~--~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~ 162 (266)
+...+... ..++ ...+...+|+.|+++|+++++. |+. .++.+.+.+.++++++++.|.+...+++++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~R~~~~~~-f~~-~~~~~~~~i~~~~~~ll~~~~~~~~~~~~vdl 164 (473)
T 3dan_A 87 EKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNLLFFM-LKN-SSNRVIPQFETTYTELFEGLEAELAKNGKAAF 164 (473)
T ss_dssp ECSSCTTSSSCCCGGGGTTSCCGGGCCTTSHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCEEC
T ss_pred eccccccccccCCccccCCCcceeeeCCCcHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCcccH
Confidence 11111111 1111 2222334599999999999976 888 58999999999999999999765444568999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCc
Q 048119 163 GQAAFNTSINLLPNTIFSIDLVHP 186 (266)
Q Consensus 163 ~~~~~~~~~~vi~~~~fG~~~~~~ 186 (266)
.+++..+++++++.++||.+.+..
T Consensus 165 ~~~~~~~~~~~i~~~~~G~~~~~~ 188 (473)
T 3dan_A 165 NDVGEQAAFRFLGRAYFNSNPEET 188 (473)
T ss_dssp HHHHHHHHHHHHHHHHHSCCGGGS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCch
Confidence 999999999999999999988763
No 56
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.68 E-value=2.4e-16 Score=133.79 Aligned_cols=183 Identities=13% Similarity=0.146 Sum_probs=133.0
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCCC------C---------C---CCcccc
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK------H---------H---EFSLVW 108 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~------~---------~---~~~l~~ 108 (266)
+..+.++ ++||||++ . ++ .++++++||+.+++++.++. |+++. + . +.++++
T Consensus 29 ~~~~~~l-~~~Gpv~~-~-~~------~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 97 (419)
T 1q5d_A 29 FPAIERL-REATPIFY-W-DE------GRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLFG 97 (419)
T ss_dssp HHHHHHH-HHHCSEEE-E-TT------TTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTTT
T ss_pred HHHHHHH-HhhCCccc-c-CC------CCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhccccccc
Confidence 6778888 68999998 6 66 78999999999999997653 55442 0 1 334555
Q ss_pred cCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCcc
Q 048119 109 LPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPN 187 (266)
Q Consensus 109 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 187 (266)
. +|+.|+++||++++. |+..+++.+.+.+.++++++++.|.+ . +++|+.+.+ ..+++|+|+.+ ||.+.+..
T Consensus 98 ~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~---~-~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~- 169 (419)
T 1q5d_A 98 L-PPEDHARVRKLVNPS-FTSRAIDLLRAEIQRTVDQLLDARSG---Q-EEFDVVRDYAEGIPMRAISAL-LKVPAECD- 169 (419)
T ss_dssp S-CHHHHHHHHHHHGGG-GSHHHHGGGHHHHHHHHHHHHHHHTT---S-SCEETTTTTGGGSHHHHHHHH-TTCCGGGH-
T ss_pred C-CchHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHh---c-CCCCHHHHHHHHHHHHHHHHH-hCCCHHHH-
Confidence 5 599999999999966 99999999999999999999999864 2 379988654 89999999998 99987542
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCC-CHHHHHHhcc
Q 048119 188 ERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSK-DMLDTVLNII 258 (266)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~-d~l~~ll~~~ 258 (266)
+.+......+...... ..+|+. ....++..+..+.+.+++.+.|+++ +..+ |+++.|+++.
T Consensus 170 -~~~~~~~~~~~~~~~~----~~~P~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~dll~~ll~~~ 233 (419)
T 1q5d_A 170 -EKFRRFGSATARALGV----GLVPRV-----DEETKTLVASVTEGLALLHGVLDERRRNPLENDVLTMLLQAE 233 (419)
T ss_dssp -HHHHHHHHHHHHHTTT----TTSSCC-----CSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccc----ccccCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHhhh
Confidence 4555555555443321 123321 1123455666777777777777632 2346 9999999864
No 57
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.68 E-value=7.5e-16 Score=130.46 Aligned_cols=178 Identities=13% Similarity=0.193 Sum_probs=130.1
Q ss_pred hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccccCCC----------C----------C-CC
Q 048119 47 HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK----------H----------H-EF 104 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~----------~----------~-~~ 104 (266)
+..+.++ ++|||++++++ ++ .++++++||+.+++++.++. +.++. . . +.
T Consensus 20 ~~~~~~l-~~yGpv~~~~~~g~------~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (411)
T 1gwi_A 20 DGESARL-RAAGPLAAVELPGG------VPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGR 90 (411)
T ss_dssp HHHHHHH-HHTCSEEEEEETTT------EEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCS
T ss_pred HHHHHHH-HHhCCeeeeecCCC------ccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccc
Confidence 6778888 89999999997 78 89999999999999997542 21110 0 2 45
Q ss_pred cccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHH-HHHHHHHHHHHhcCCc
Q 048119 105 SLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAF-NTSINLLPNTIFSIDL 183 (266)
Q Consensus 105 ~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~ 183 (266)
++++. +|+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+++. .+++|+++. +||.+.
T Consensus 91 ~l~~~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~ 164 (411)
T 1gwi_A 91 SMLTV-DGAEHRRLRTLVAQA-LTVRRVEHMRGRITELTDRLLDELPA---DGGVVDLKAAFAYPLPMYVVAD-LMGIEE 164 (411)
T ss_dssp SGGGC-CHHHHHHHHHHHTTT-SCHHHHHTTHHHHHHHHHHHHHTSCC---SCCCEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred ccccC-CcHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcchHHHHhhHHHHHHHHH-HhCCCH
Confidence 66666 599999999999965 99999999999999999999998853 356899998886 599999996 699876
Q ss_pred cCccHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 184 VHPNERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
+.. +.+...+..+.. . . .+ .++..+..+.+.+++.+.|+++ ...+|+++.|+++.+
T Consensus 165 ~~~--~~~~~~~~~~~~---~-~----------~~----~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~ 222 (411)
T 1gwi_A 165 ARL--PRLKVLFEKFFS---T-Q----------TP----PEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASE 222 (411)
T ss_dssp GGH--HHHHHHHHHHHC---T-T----------SC----HHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCB
T ss_pred HHH--HHHHHHHHHHhc---c-C----------CC----hHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcc
Confidence 432 444444443321 0 0 11 1344555666666676666632 345799999998753
No 58
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.68 E-value=6.8e-16 Score=130.72 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=128.3
Q ss_pred hHHHHHHHHhcCCcEEEecCc-cccCCceEEEEeCCHHHHHHHHHHcCccccCC-----------C-CC--CCcccccCC
Q 048119 47 HKSLAKLAKIHGPIMNLRLGV-RLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-----------K-HH--EFSLVWLPV 111 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~-~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-----------~-~~--~~~l~~~~~ 111 (266)
+.++.+++ +||||+++.+++ . .+.+++++|+.+++|+.+. .|.++ . .+ +.++++. +
T Consensus 30 ~~~~~~l~-~~Gpv~~~~~~~g~-----~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~-d 100 (411)
T 2dkk_A 30 DPVLAELM-REGPLTRVRLPHGE-----GWAWLATRYDDVKAITNDP--RFGRAEVTQRQITRLAPHFKPRPGSLAFA-D 100 (411)
T ss_dssp CHHHHHHH-TTCSEEEEECSBSB-----SCEEEECSHHHHHHHTTCT--TEESGGGGGSCBCBSSSCCCCCTTCSTTC-C
T ss_pred cHHHHHHH-hcCCeEeeecCCCc-----eeEEEEcCHHHHHHHHcCC--CcccCCCCCCCccccccchhccccccccC-C
Confidence 67788887 799999998643 0 2589999999999999642 34433 1 11 5566666 5
Q ss_pred ChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHH-HHHHHHHHHHHhcCCccCccHHH
Q 048119 112 STLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAF-NTSINLLPNTIFSIDLVHPNERK 190 (266)
Q Consensus 112 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~~~~~ 190 (266)
|+.|+++||.+++. |+.++++.+.+.+.+.++++++.|.+ .|+++|+.+++. .+++|+|+. +||.+.+.. +.
T Consensus 101 g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~--~~ 173 (411)
T 2dkk_A 101 QPDHNRLRRAVAGA-FTVGATKRLRPRAQEILDGLVDGILA---EGPPADLVERVLEPFPIAVVSE-VMGVPAADR--ER 173 (411)
T ss_dssp TTHHHHHHHHHGGG-SSHHHHHHHHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHHHHHHH-HHTCCSSHH--HH
T ss_pred chHHHHHHHHhhHh-hCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHH-HhCCCHHHH--HH
Confidence 99999999999976 99999999999999999999999976 345799998776 699999998 599876431 33
Q ss_pred HHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhc
Q 048119 191 FKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNI 257 (266)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~ 257 (266)
+.... ..+.. ..+ + .++..+..+.+.+++.+.|+++ ...+|+++.|+++
T Consensus 174 ~~~~~----~~~~~-----~~~-----~----~~~~~~~~~~l~~~~~~~i~~r~~~~~~dll~~ll~~ 224 (411)
T 2dkk_A 174 VHSWT----RQIIS-----TSG-----G----AEAAERAKRGLYGWITETVRARAGSEGGDVYSMLGAA 224 (411)
T ss_dssp HHHHH----GGGCS-----SCS-----C----SHHHHHHHHHHHHHHHHHHHTTTTCCSSCHHHHHHHH
T ss_pred HHHHH----HHHHh-----ccc-----h----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 32222 21111 111 1 2445566777777888877743 2456999999986
No 59
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.68 E-value=1.1e-15 Score=129.76 Aligned_cols=184 Identities=12% Similarity=0.131 Sum_probs=131.1
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC----------C-------CCCCccccc
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR----------K-------HHEFSLVWL 109 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~----------~-------~~~~~l~~~ 109 (266)
+.++.++ ++||||+++..| .++|++|+.+++++.+. ..++++ . ..+.++++.
T Consensus 32 ~~~~~~l-r~~gpv~~~~~g---------~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (418)
T 3r9b_A 32 YPIYDRI-RRGGPLALPEAN---------LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFLFL 100 (418)
T ss_dssp HHHHHHH-HHHCCEEEGGGT---------EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGGGC
T ss_pred hHHHHHH-HhcCCEEECCCC---------eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchhhc
Confidence 6677777 578999975432 69999999999999653 333333 0 134577777
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccH
Q 048119 110 PVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNE 188 (266)
Q Consensus 110 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~ 188 (266)
+ |+.|+++||.+++. |+.++++.+.+.+.++++++++ +.+ ++++|+.+.+ ..+++++++. +||.+.+..
T Consensus 101 d-g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~-l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~-- 170 (418)
T 3r9b_A 101 D-PPDHTRLRGLVSKA-FAPRVIKRLEPEITALVDQLLD-AVD----GPEFNLIDNLAYPLPVAVICR-LLGVPIEDE-- 170 (418)
T ss_dssp C-TTHHHHHHHHHHGG-GSHHHHGGGHHHHHHHHHHHHH-TCC----SSEEEHHHHTTTHHHHHHHHH-HHTCCGGGH--
T ss_pred C-CchHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHh-hhc----cCCeehHHHHhCcCCHHHHHH-HcCCCHHHH--
Confidence 5 99999999999965 9999999999999999999999 742 3478976555 6899999999 899887542
Q ss_pred HHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhcc
Q 048119 189 RKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNII 258 (266)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~ 258 (266)
..+......+...... ++.+.+++. ...++..+..+.+.+++.+.++++ ...+|+++.|++..
T Consensus 171 ~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~~r~~~~~~d~l~~ll~~~ 235 (418)
T 3r9b_A 171 PKFSRASALLAAALDP------FLALTGETS-DLFDEQMKAGMWLRDYLRALIDERRRTPGEDLMSGLVAVE 235 (418)
T ss_dssp HHHHHHHHHHHHTTSC------HHHHHSSCC-TTHHHHHHHHHHHHHHHHHHHHHTTTSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCc------cccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhh
Confidence 4455554444332211 111222332 234667778888888888888743 34679999999764
No 60
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.67 E-value=2.7e-15 Score=126.72 Aligned_cols=172 Identities=13% Similarity=0.110 Sum_probs=124.5
Q ss_pred hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccccCC--------C-CCCCc--ccccCCC--
Q 048119 47 HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--------K-HHEFS--LVWLPVS-- 112 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--------~-~~~~~--l~~~~~g-- 112 (266)
+.++.++ ++||||+++++ ++ .+.++|+||+.+++|+.++ .|.++ . ..+.+ +++. +|
T Consensus 29 ~~~~~~l-~~yGpv~~~~~~~~------~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~l~~~-~g~~ 98 (404)
T 2xbk_A 29 SPLLRAL-QDRGPIHRVRTPAG------DEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVRSPFLDLLIS-DADA 98 (404)
T ss_dssp CHHHHHH-HHHCSEEEEECTTS------CEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSCCHHHHTTCB-CSCH
T ss_pred cHHHHHH-HhhCCEeeeccCCC------ceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccccccccceee-CCCC
Confidence 7788889 89999999996 78 8999999999999999753 34443 1 12445 5555 59
Q ss_pred ----hhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCcc
Q 048119 113 ----TLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPN 187 (266)
Q Consensus 113 ----~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 187 (266)
+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ .|+++|+.+++ ..+++++++. +||.+.+..
T Consensus 99 ~~~~~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~- 172 (404)
T 2xbk_A 99 ESGRRQHAETRRLLTPL-FSARRVLEMQPKVEEAADTLLDAFIA---QGPPGDLHGELTVPFALTVLCE-VIGVPPQRR- 172 (404)
T ss_dssp HHHHHHHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHHH---TCSSEEHHHHTHHHHHHHHHHH-HHTCCGGGH-
T ss_pred CCCCchHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHHHHHHHHHHH-HhCCCHHHH-
Confidence 9999999999976 99999999999999999999999974 45689998766 5799999997 799876432
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHH
Q 048119 188 ERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTV 254 (266)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~l 254 (266)
+.+...+..+. .. . .| + +..+..+.+.+++.+.|+++ ...+|+++.|
T Consensus 173 -~~~~~~~~~~~----~~--~--~~--------p---~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~l 221 (404)
T 2xbk_A 173 -AELTTLLAGIA----KL--D--DR--------E---GAVRAQDDLFGYVAGLVEHKRAEPGPDIISRL 221 (404)
T ss_dssp -HHHHHHHHHHT----BS--S--CH--------H---HHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHH
T ss_pred -HHHHHHHHHHH----hc--c--Cc--------H---HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHh
Confidence 34443333221 10 0 00 1 33445555666666666532 2356999988
No 61
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.67 E-value=1.8e-15 Score=128.61 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=130.4
Q ss_pred hHHHHHHHHhcC-CcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---------CCCCCcccccCCChhHH
Q 048119 47 HKSLAKLAKIHG-PIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---------KHHEFSLVWLPVSTLWR 116 (266)
Q Consensus 47 ~~~~~~~~~~yG-~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---------~~~~~~l~~~~~g~~w~ 116 (266)
+.++.++++++| ||+++..++ +.++|+||+.+++|+. +...|.++ ...+.+++.. +|+.|+
T Consensus 41 ~~~~~~lr~~~G~pv~~~~~~~-------~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~-dg~~h~ 111 (421)
T 3lxh_A 41 HEAWKRVQQPDTPPLVWTPFTG-------GHWIATRGTLIDEIYR-SPERFSSRVIWVPREAGEAYDMVPTKL-DPPEHT 111 (421)
T ss_dssp HHHHHHHCCTTCCSEEEESSTT-------SEEEECSHHHHHHHHT-CTTTEETTCCSSSHHHHHHCCCTTTTC-CTTTHH
T ss_pred hHHHHHHHhcCCCCeEeccCCC-------CeEEEcCHHHHHHHHc-ChhhccCCcccCCcccccccccCCccC-CcHHHH
Confidence 667888876655 899988776 4789999999999994 44567655 1123455556 499999
Q ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccHHHHHHHH
Q 048119 117 SYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNERKFKDTV 195 (266)
Q Consensus 117 ~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~ 195 (266)
++||++++. |+.++++.+.+.+.++++++++.|.+ ++.+|+...+ ..++.++++.+ ||.+.+.. ..+.+..
T Consensus 112 ~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~v~~~~-~G~~~~~~--~~~~~~~ 183 (421)
T 3lxh_A 112 PYRKAIDKG-LNLAEIRKLEDQIRTIAVEIIEGFAD----RGHCEFGSEFSTVFPVRVFLAL-AGLPVEDA--TKLGLLA 183 (421)
T ss_dssp HHHHHHHHH-HSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTTHHHHHHHHH-HTCCGGGH--HHHHHHH
T ss_pred HHHHHHhhh-cCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHHHHHHHHHH-cCCCHHHH--HHHHHHH
Confidence 999999976 99999999999999999999998854 3468875555 66888888764 89766432 4444444
Q ss_pred HHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 196 WGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 196 ~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
..+.. . ..++|. ...++..+..+.+.+++.+.++++ ...+|+++.|+++..
T Consensus 184 ~~~~~---~---------~~~~p~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~ 236 (421)
T 3lxh_A 184 NEMTR---P---------SGNTPE-EQGRSLEAANKGFFEYVAPIIAARRGGSGTDLITRILNVEI 236 (421)
T ss_dssp HHHHS---C---------CCSSHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHTSCB
T ss_pred HHHhc---c---------ccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhhhc
Confidence 43321 1 112221 124566677778888888888743 356799999998754
No 62
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.65 E-value=1.8e-15 Score=127.58 Aligned_cols=179 Identities=13% Similarity=0.094 Sum_probs=128.4
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC--C-----------C-C--CCcccccC
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--K-----------H-H--EFSLVWLP 110 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--~-----------~-~--~~~l~~~~ 110 (266)
+.++.++ ++||||++ + + .+.++|+||+.+++++.+ ..|.++ . . . +.++++.+
T Consensus 16 ~~~~~~l-~~yGpv~~-~--g------~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (397)
T 3buj_A 16 YPSYHWL-LRHDPVHR-G--A------HRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQD 83 (397)
T ss_dssp HHHHHHH-HHHCSEEE-C--G------GGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGCC
T ss_pred hHHHHHH-HhcCCeee-C--C------CCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccCC
Confidence 5566666 58999998 6 5 688999999999999974 245443 0 0 1 56677665
Q ss_pred CChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHH-HHHHHHHHHHHHHhcCCccCccHH
Q 048119 111 VSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQA-AFNTSINLLPNTIFSIDLVHPNER 189 (266)
Q Consensus 111 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~~ 189 (266)
|+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ ++++|+.+. ...+++++++.+ ||.+.+.. +
T Consensus 84 -g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~~vi~~~-~G~~~~~~--~ 154 (397)
T 3buj_A 84 -EPDHGRLRGVVGPA-FSPSALRRLEPVIAGTVDDLLRPALA----RGAMDVVDELAYPLALRAVLGL-LGLPAADW--G 154 (397)
T ss_dssp -TTHHHHHHHHHGGG-SSTTTTGGGHHHHHHHHHHHHHHHHT----TTEEEHHHHTHHHHHHHHHHHH-HTCCGGGH--H
T ss_pred -chhHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHhHHHHHHHH-hCCCHHHH--H
Confidence 99999999999975 99999999999999999999999864 347998755 578999999999 99987542 4
Q ss_pred HHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhcc
Q 048119 190 KFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNII 258 (266)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~ 258 (266)
.+......+.... +. .++ +...++..+..+.+.+++.+.|+++ ...+|+++.|+++.
T Consensus 155 ~~~~~~~~~~~~~---------~~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~ 213 (397)
T 3buj_A 155 AVGRWSRDVGRTL---------DR--GAS-AEDMRRGHAAIAEFADYVERALARRRREGGEDLLALMLDAH 213 (397)
T ss_dssp HHHHHHHHHHGGG---------CS--SCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhhc---------CC--CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhh
Confidence 4444444333221 11 111 1223455566677777777777632 24579999999864
No 63
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.64 E-value=5e-15 Score=124.91 Aligned_cols=174 Identities=13% Similarity=0.148 Sum_probs=122.0
Q ss_pred HHHHHhcCCcEEEecC-ccccCCce---EEEEeCCHHHHHHHHHHcCccccCC-----------------CCCCCccccc
Q 048119 51 AKLAKIHGPIMNLRLG-VRLSFNLV---TTVVVSSPSTAKAILKEHDSLFCDR-----------------KHHEFSLVWL 109 (266)
Q Consensus 51 ~~~~~~yG~i~~~~~~-~~~~~~~~---~~v~v~dp~~~~~i~~~~~~~~~~~-----------------~~~~~~l~~~ 109 (266)
.+|+++ |||++++++ + . ++++++||+.+++++.++. .|.++ ...+.++++.
T Consensus 20 ~~l~~~-Gpv~~~~~~~g------~~~~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (398)
T 1lfk_A 20 DELLAA-GALTRVTIGSG------ADAETHWMATAHAVVRQVMGDHQ-QFSTRRRWDPRDEIGGKGIFRPRELVGNLMDY 91 (398)
T ss_dssp HHHHTS-CSEEEEC------------CCCEEEECSHHHHHHHHHCTT-TEEECTTCCC-------------CCTTCGGGC
T ss_pred HHHHhc-CCccccccCCC------CcccceEEEecHHHHHHHHhhCc-ccccccccccccccCCcccccccccccCcccc
Confidence 446666 999999875 4 5 8999999999999993332 24322 1124567666
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHH-HHHHHHHHHHhcCCccCccH
Q 048119 110 PVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFN-TSINLLPNTIFSIDLVHPNE 188 (266)
Q Consensus 110 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~-~~~~vi~~~~fG~~~~~~~~ 188 (266)
+ |+.|+++||.+++. |+.++++.+.+.+.++++++++.|.+ .++++|+.+++.. +++++++. +||.+.+..
T Consensus 92 ~-g~~~~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~-- 163 (398)
T 1lfk_A 92 D-PPEHTRLRRKLTPG-FTLRKMQRMAPYIEQIVNDRLDEMER---AGSPADLIAFVADKVPGAVLCE-LVGVPRDDR-- 163 (398)
T ss_dssp C-TTHHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGGGH--
T ss_pred C-CHHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHHHH--
Confidence 4 99999999999976 99999999999999999999999975 3567999999987 99999998 599886532
Q ss_pred HHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhcc
Q 048119 189 RKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNII 258 (266)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~ 258 (266)
+.+......+ .. . + +..++..+..+.+.+++.+.|+++ ...+|+++.|++..
T Consensus 164 ~~~~~~~~~~----~~-----~-------~--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~ 217 (398)
T 1lfk_A 164 DMFMKLCHGH----LD-----A-------S--LSQKRRAALGDKFSRYLLAMIARERKEPGEGMIGAVVAEY 217 (398)
T ss_dssp HHHHHHHHHT----TC-----T-------T--SCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHH----Hh-----c-------c--cchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhc
Confidence 3333332221 11 0 0 112445556666777777766632 24579999999753
No 64
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.64 E-value=1.3e-14 Score=122.94 Aligned_cols=178 Identities=11% Similarity=0.088 Sum_probs=125.1
Q ss_pred hHHHHHHHHhcCCcE-----EEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---C-----------CCCCccc
Q 048119 47 HKSLAKLAKIHGPIM-----NLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---K-----------HHEFSLV 107 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~-----~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---~-----------~~~~~l~ 107 (266)
+.++.+++ +||||+ +++. . +.++++||+.+++++.++ ..|+++ . ..+.+++
T Consensus 28 ~~~~~~l~-~~Gpv~~~~~~~~~~-~-------~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (414)
T 2uuq_A 28 WPMYRALR-DHDPVHHVVPPQRPE-Y-------DYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMV 97 (414)
T ss_dssp HHHHHHHH-HHCSEEEECCTTCGG-G-------CEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGG
T ss_pred hHHHHHHH-hcCCEEcccccccCC-C-------CEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccc
Confidence 66777774 689998 6654 3 579999999999999865 446554 1 1245676
Q ss_pred ccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHH-HHHHHHHHHHHHHHHhcCCccCc
Q 048119 108 WLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFG-QAAFNTSINLLPNTIFSIDLVHP 186 (266)
Q Consensus 108 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~-~~~~~~~~~vi~~~~fG~~~~~~ 186 (266)
+. +|+.|+++||++++. |+.++++.+.+.+.++++++++.|.+. +++|+. +.+..+++|+++. +||.+.+..
T Consensus 98 ~~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~vdl~~~~~~~~~~~vi~~-~~G~~~~~~ 170 (414)
T 2uuq_A 98 MQ-DPPVHTEFRKLVSRG-FTPRQVETVEPTVRKFVVERLEKLRAN----GGGDIVTELFKPLPSMVVAH-YLGVPEEDW 170 (414)
T ss_dssp GC-CTTHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHHT----TEEEHHHHTTTHHHHHHHHH-HTTCCGGGH
T ss_pred cC-CchhHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHHHHHHhHHHHHHH-HhCCCHHHH
Confidence 66 599999999999965 999999999999999999999999762 369997 5567999999999 699987632
Q ss_pred cHHHHHHHHHHHHHHhCCCCccchh-cccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 187 NERKFKDTVWGMMEEAGKPNLSDHF-PLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
+.+......+... ..+ |.. .+..+..+.+.+++.+.|+++ ...+|+++.|++...
T Consensus 171 --~~~~~~~~~~~~~-------~~~~p~~---------~~~~~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~ 228 (414)
T 2uuq_A 171 --TQFDGWTQAIVAA-------NAVDGAT---------TGALDAVGSMMAYFTGLIERRRTEPADDAISHLVAAGV 228 (414)
T ss_dssp --HHHHHHHHHHHHH-------HHC--------------CCHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHTTT
T ss_pred --HHHHHHHHHHHhh-------cccCCch---------hHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhccc
Confidence 4454444443331 011 210 112334445555666665532 245799999998753
No 65
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.63 E-value=1.4e-15 Score=129.90 Aligned_cols=183 Identities=12% Similarity=0.081 Sum_probs=119.2
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC-------CCCCC-cccccCCChhHHHH
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-------KHHEF-SLVWLPVSTLWRSY 118 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-------~~~~~-~l~~~~~g~~w~~~ 118 (266)
+.++.++ ++||||+++..++ .++|++|+.+++|+.+.. .|.++ ...+. +++.. +|+.|+++
T Consensus 56 ~~~~~~l-r~~gpv~~~~~~~--------~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~l~~~-dg~~h~~~ 124 (441)
T 3nc3_A 56 YAYFSQL-REEDPVHYEESID--------SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVMRGPVLAQM-HGKEHSAK 124 (441)
T ss_dssp GGTHHHH-HHHCSEEEETTTT--------EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSCC--------------CC
T ss_pred HHHHHHH-HhcCCEEEeCCCC--------EEEEcCHHHHHHHhcCcc-cccccccccccccccCCCccccC-CcHHHHHH
Confidence 4456665 6899999876543 699999999999997654 36654 12233 45555 49999999
Q ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHH-HHHHHHHHHHHHHHhcCCccCccHHHHHHHHHH
Q 048119 119 RKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQ-AAFNTSINLLPNTIFSIDLVHPNERKFKDTVWG 197 (266)
Q Consensus 119 Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~-~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~ 197 (266)
||++++. |+.++++.+.+.+.++++++++.|.+ ++.+|+.. ....+++++++. +||.+.+.. +.+......
T Consensus 125 Rr~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~--~~~~~~~~~ 196 (441)
T 3nc3_A 125 RRIVVRS-FIGDALDHLSPLIKQNAENLLAPYLE----RGKSDLVNDFGKTFAVCVTMD-MLGLDKRDH--EKISEWHSG 196 (441)
T ss_dssp HHHHHHH-HHHTHHHHHHHHHHHHHHHHHTTTTT----TTEEECCCCCHHHHHHHHHHH-HTTCCGGGH--HHHHHHHHH
T ss_pred HHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHH-HcCCCHHHH--HHHHHHHHH
Confidence 9999966 99999999999999999999988853 34688754 445699999999 589876432 455555555
Q ss_pred HHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 198 MMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 198 ~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
+........ .+ ....++..+..+.+.+++.+.|+++ +..+|+++.|+++.+
T Consensus 197 ~~~~~~~~~----------~~-~~~~~~~~~~~~~l~~~~~~~i~~rr~~~~~Dll~~Ll~~~~ 249 (441)
T 3nc3_A 197 VADFITSIS----------QS-PEARAHSLWCSEQLSQYLMPVIKERRVNPGSDLISILCTSEY 249 (441)
T ss_dssp HHHHHHCSC----------CC-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHCC---
T ss_pred HHHhccccc----------CC-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhc
Confidence 554332210 01 1123455666777788888877743 345799999998654
No 66
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.61 E-value=2.8e-15 Score=126.33 Aligned_cols=174 Identities=12% Similarity=0.076 Sum_probs=125.7
Q ss_pred hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCcccc-C-C-C-----C--------CCCccccc
Q 048119 47 HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFC-D-R-K-----H--------HEFSLVWL 109 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~-~-~-~-----~--------~~~~l~~~ 109 (266)
+..+.+| ++||||+++++ ++ .+.++++||+.+++++.++ .|. + + . + .+.+++++
T Consensus 19 ~~~~~~l-~~yGpv~~~~~~g~------~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (396)
T 1n40_A 19 PDAVAEL-RTREPIRKVRTITG------AEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI 89 (396)
T ss_dssp CHHHHHH-HHHCSEEEEECTTS------CEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH
T ss_pred cHHHHHH-HHhCCeeEeecCCC------ceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH
Confidence 7788999 99999999997 78 8999999999999999754 354 3 2 1 0 12233322
Q ss_pred CCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHH-HHHHHHHHHHHhcCCccCccH
Q 048119 110 PVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAF-NTSINLLPNTIFSIDLVHPNE 188 (266)
Q Consensus 110 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~~~~~ 188 (266)
.|+++||.+++. |+.+ ++.+.+.+.++++++++.|.+. ++++|+.+++. .+++++++. +||.+.+..
T Consensus 90 ----~h~~~R~~~~~~-fs~~-~~~~~~~i~~~~~~l~~~l~~~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~-- 157 (396)
T 1n40_A 90 ----ADAGLRKAVMKA-ITPK-APGLEQFLRDTANSLLDNLITE---GAPADLRNDFADPLATALHCK-VLGIPQEDG-- 157 (396)
T ss_dssp ----HHTTCHHHHHHH-TSSC-STTHHHHHHHHHHHHHHHHHHH---CSCEETTTTTHHHHHHHHHHH-HHTCCGGGH--
T ss_pred ----HHHHHHHHHHHh-hChH-HHHhHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHhHHHHHHH-HhCCChhhH--
Confidence 899999999976 9998 9999999999999999999752 56799987664 899999999 799986532
Q ss_pred HHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHhcc
Q 048119 189 RKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSISIKSKDMLDTVLNII 258 (266)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~l~~ll~~~ 258 (266)
+.+.+....+.. . .. ..| .++..+..+.+ +++.+.|++..+.+|+++.|++..
T Consensus 158 ~~~~~~~~~~~~---~---~~------~~p----~~~~~~~~~~~-~~~~~~i~~~~~~~dll~~ll~~~ 210 (396)
T 1n40_A 158 PKLFRSLSIAFM---S---SA------DPI----PAAKINWDRDI-EYMAGILENPNITTGLMGELSRLR 210 (396)
T ss_dssp HHHHHTHHHHTB---C---CS------SCC----HHHHHHHHHHH-HHHHHHHHCTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---c---cc------CCC----HHHHHHHHHHH-HHHHHHHhCCCCCCCHHHHHHHhh
Confidence 344443332211 1 00 112 13455566667 778887773333479999999864
No 67
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.61 E-value=1.5e-14 Score=121.81 Aligned_cols=176 Identities=6% Similarity=-0.014 Sum_probs=122.4
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCCC---------CCCCcccccCCChhHHH
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK---------HHEFSLVWLPVSTLWRS 117 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~---------~~~~~l~~~~~g~~w~~ 117 (266)
+.++.+++++ |||+++..++ . .++++||+.+++++.+. ..|+++. ..+.+++.. +|+.|++
T Consensus 27 ~~~~~~l~~~-Gpv~~~~~~~------~-~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~-~g~~h~~ 96 (396)
T 3oft_A 27 FAAWKTLLDG-PGLVWSTANG------G-HWIAARGDVVRELWGDA-ERLSSQCLAVTPGLGKVMQFIPLQQ-DGAEHKA 96 (396)
T ss_dssp HHHHHGGGGS-CSEEEECSTT------S-EEEECSHHHHHHHHHCT-TTEESTTCCSSTTHHHHHCCTTTTC-CHHHHHH
T ss_pred HHHHHHHHhc-CCeeeecCCC------C-EEEEcCHHHHHHHHcCc-ccccCCcccCCCccccccccCcccc-CCcHHHH
Confidence 7788999988 9999998776 4 78899999999999643 4566551 112344445 5999999
Q ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccHHHHHHHHH
Q 048119 118 YRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNERKFKDTVW 196 (266)
Q Consensus 118 ~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~ 196 (266)
+||.+++. |+.++++.+.+.+.++++++++.|.+. +.+|+...+ ..++.++++. +||.+.+.. ..+.....
T Consensus 97 ~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l~~~----~~~d~~~~~~~~~~~~v~~~-~~G~~~~~~--~~~~~~~~ 168 (396)
T 3oft_A 97 FRTPVMKG-LASRFVVALEPKVQAVARKLMESLRPR----GSCDFVSDFAEILPLNIFLT-LIDVPLEDR--PRLRQLGV 168 (396)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHGGG----SEEEHHHHTTTTHHHHHHHH-HTTCCGGGH--HHHHHHHH
T ss_pred HHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHhhhc----CCccHHHHHHHHHHHHHHHH-HcCCCHHHH--HHHHHHHH
Confidence 99999966 999999999999999999999998642 368876655 5677777776 588765432 34444433
Q ss_pred HHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 197 GMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 197 ~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
.+.. . .. .++..+..+.+.+++.+.|+++ ...+|+++.|++..+
T Consensus 169 ~~~~---~------------~~----~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~ 214 (396)
T 3oft_A 169 QLTR---P------------DG----SMTVEQLKQAADDYLWPFIEKRMAQPGDDLFSRILSEPV 214 (396)
T ss_dssp HHHS---C------------CS----SCCHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHTSCB
T ss_pred HHhC---C------------CC----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhc
Confidence 3221 0 00 1122344445555555555422 356799999998754
No 68
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.56 E-value=3.3e-13 Score=114.76 Aligned_cols=183 Identities=10% Similarity=0.069 Sum_probs=126.5
Q ss_pred hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHHcCccccCC------------------CCCCCccc
Q 048119 47 HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR------------------KHHEFSLV 107 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~------------------~~~~~~l~ 107 (266)
+.++.+++++ |||+++.. ++ .++++|++++.+++++.+. ..|+++ ...+.+++
T Consensus 41 ~~~~~~lr~~-gpv~~~~~~~~------~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 112 (426)
T 3rwl_A 41 GEYFKRLRKD-DPVHYCADSAF------GPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFI 112 (426)
T ss_dssp HHHHHHHHHH-CSEEEESCCTT------CSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGG
T ss_pred cHHHHHHHhc-CCeeeccCCCC------CCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCccc
Confidence 5567777765 99999886 45 6799999999999999754 234332 11234455
Q ss_pred ccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCc
Q 048119 108 WLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHP 186 (266)
Q Consensus 108 ~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~ 186 (266)
.. +|+.|+++||++++. |+.++++.+.+.+.+.++++++.|. .++++|+.+.+ ..+++++++. +||.+.+..
T Consensus 113 ~~-dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~----~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~ 185 (426)
T 3rwl_A 113 AM-DRPRHDEQRKAVSPI-VAPANLAALEGTIRERVSKTLDGLP----VGEEFDWVDRVSIEITTQMLAT-LFDFPFEER 185 (426)
T ss_dssp GC-CTTHHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHTSC----SSSCEEHHHHTHHHHHHHHHHH-HHTCCGGGT
T ss_pred cc-CchHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHhh----cCCCcchHHHHHHHHHHHHHHH-HcCCCHHHH
Confidence 55 599999999999966 9999999999999999999999872 35689977776 6889998886 799865443
Q ss_pred cHHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc---CCCCCCHHHHHHhccc
Q 048119 187 NERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI---SIKSKDMLDTVLNIIQ 259 (266)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~d~l~~ll~~~~ 259 (266)
..+.... ..+... +.... ....++..+..+.+.+++.+.+++ .+..+|+++.|++..+
T Consensus 186 --~~~~~~~----~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~dll~~ll~~~~ 246 (426)
T 3rwl_A 186 --RKLTRWS----DVTTAA------PGGGV---VESWDQRKTELLECAAYFQVLWNERVNKDPGNDLISMLAHSPA 246 (426)
T ss_dssp --HHHHHHH----HHHTCC------TTSSS---CSSHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHCGG
T ss_pred --HHHHHHH----HHHHhc------cCccc---cccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhccc
Confidence 3333332 222110 10001 112344455666777777777763 2456799999998754
No 69
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.56 E-value=2.6e-14 Score=118.16 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=116.1
Q ss_pred HhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCCC--C----CCCcccccCCChhHHHHHHHHHhhhcc
Q 048119 55 KIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK--H----HEFSLVWLPVSTLWRSYRKMCNMHIFN 128 (266)
Q Consensus 55 ~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~--~----~~~~l~~~~~g~~w~~~Rk~~~~~~f~ 128 (266)
++||||+++ | .++++||+.+++++.++ ..|.++. + .+.++++. +|+.|+++||.+++. |+
T Consensus 2 r~~gpv~~~---g--------~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~l~~~-~g~~~~~~R~~~~~~-fs 67 (343)
T 2rfb_A 2 RLNDPVHYD---G--------AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNAGGISFITM-DNPEHKEFRDISAPY-FL 67 (343)
T ss_dssp -CCCCEEET---T--------EEEECSHHHHHHHHHCT-TTEESSCSSCCC---CCGGGGC-CHHHHHHHHHHHHHH-HS
T ss_pred CCcCCeeee---C--------eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCccccccccC-CchHHHHHHHHhhhh-cC
Confidence 579999865 4 48999999999999865 3566552 1 25667666 499999999999976 99
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHhCCCCc
Q 048119 129 RQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNERKFKDTVWGMMEEAGKPNL 207 (266)
Q Consensus 129 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (266)
.++++.+.+.+.++++++++.|. ++|+.+++ ..+++|+++.+ ||.+.+.. +.+......+.. .
T Consensus 68 ~~~l~~~~~~i~~~~~~l~~~l~-------~~d~~~~~~~~~~~~vi~~~-~G~~~~~~--~~~~~~~~~~~~---~--- 131 (343)
T 2rfb_A 68 PSKINDYKDFIEETSNDLIKNID-------NKDIISEYAVRLPVNIISKI-LGIPDSDM--PLFKLWSDYIIG---N--- 131 (343)
T ss_dssp HHHHGGGHHHHHHHHHHHHTTCT-------TSCHHHHTTTHHHHHHHHHH-HTCCGGGH--HHHHHHHHHHHT---S---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------ccCHHHHHhhhhhHHHHHHH-cCCCHHHH--HHHHHHHHHHhh---c---
Confidence 99999999999999999998874 68998865 89999999999 99877532 444444433322 1
Q ss_pred cchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHhcc
Q 048119 208 SDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSISIKSKDMLDTVLNII 258 (266)
Q Consensus 208 ~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~l~~ll~~~ 258 (266)
..|.+ . ..++. +..+.+.+++.+.+ .+| ++.|++..
T Consensus 132 --~~p~~-----~-~~~~~-~~~~~~~~~~~~~i-----~~d-l~~ll~~~ 167 (343)
T 2rfb_A 132 --KRDEN-----F-NYVNN-RMVSRLLEIFKSDS-----HGI-INVLAGSS 167 (343)
T ss_dssp --CCSSH-----H-HHHHH-HHHHHHHHHHHSCC-----SSH-HHHHHTCB
T ss_pred --cCcch-----h-hHHHH-HHHHHHHHHHHHHH-----hcc-HHHHHhhh
Confidence 01211 0 12344 66777888888877 358 99999764
No 70
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.56 E-value=3.1e-14 Score=120.66 Aligned_cols=179 Identities=14% Similarity=0.063 Sum_probs=122.7
Q ss_pred hHHHHHHHHhcCCcEEEe-cC--ccccCCceEEEEeCCHHHHHHHHHHcCccccCC------C----C--C-CCcccccC
Q 048119 47 HKSLAKLAKIHGPIMNLR-LG--VRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR------K----H--H-EFSLVWLP 110 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~-~~--~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~------~----~--~-~~~l~~~~ 110 (266)
+..+.++++ ||||+++. .| . +.++|++|+.+++++++ ...|+++ . . . +.+++..
T Consensus 40 ~~~~~~lr~-~gpV~~~~~~g~~~-------~~~vv~~~~~v~~vl~~-~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~- 109 (415)
T 3mgx_A 40 HARWRELAA-EDAMVWSDPGSSPS-------GFWSVFSHRACAAVLAP-SAPLTSEYGMMIGFDRDHPDNSGGRMMVVS- 109 (415)
T ss_dssp HHHHHHHHH-HTCCEEECSSSSSS-------CEEEECSHHHHHHHSCT-TSSEECTTCSSTTCCSSSCCTTTTTSGGGC-
T ss_pred hHHHHHHHh-cCCEeeccCCCCcC-------CEEEEecHHHHHHHHhC-hhhhcCCccccccccccccccccCCCcccc-
Confidence 667788876 89999986 45 3 68899999999999954 3456554 0 0 1 4455555
Q ss_pred CChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccHH
Q 048119 111 VSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNER 189 (266)
Q Consensus 111 ~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~ 189 (266)
+|+.|+++||++++. |+.++++.+.+.+.++++++++.|.+ ++++|+.+++ ..+++++|+. +||.+.+. ..
T Consensus 110 dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~--~~ 181 (415)
T 3mgx_A 110 EHEQHRKLRKLVGPL-LSRAAARKLAERVRIEVGDVLGRVLD----GEVCDAATAIGPRIPAAVVCE-ILGVPAED--ED 181 (415)
T ss_dssp CHHHHHHHHHHHGGG-SSHHHHHHSHHHHHHHHHHHTTTSSS----SSCEESTTTTTTHHHHHHHHH-HHTCCGGG--HH
T ss_pred CcHHHHHHHHHhHhh-hCHHHHHHHHHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHH-HcCCCHHH--HH
Confidence 599999999999966 99999999999999999999988754 2379998888 6799999998 58976433 24
Q ss_pred HHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhcc
Q 048119 190 KFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNII 258 (266)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~ 258 (266)
.+.+....+.... .|. +.+.. . .++.+.+.+++.+.|+++ +..+|+++.|+++.
T Consensus 182 ~~~~~~~~~~~~~--------~~~--~~~~~-~----~~~~~~l~~~~~~~i~~rr~~~~~dll~~ll~~~ 237 (415)
T 3mgx_A 182 MLIDLTNHAFGGE--------DEL--FDGMT-P----RQAHTEILVYFDELITARRKEPGDDLVSTLVTDD 237 (415)
T ss_dssp HHHHHHHHHTSCC--------C------CCC-H----HHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCT
T ss_pred HHHHHHHHHHccc--------Ccc--cchHH-H----HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhCC
Confidence 4444443332110 111 11111 1 244555666666666532 34579999999764
No 71
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.54 E-value=4.3e-14 Score=117.93 Aligned_cols=170 Identities=15% Similarity=0.160 Sum_probs=121.2
Q ss_pred HHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCCC----------------CC--C-Ccccc
Q 048119 48 KSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDRK----------------HH--E-FSLVW 108 (266)
Q Consensus 48 ~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~~----------------~~--~-~~l~~ 108 (266)
..+.++ ++||||+++ |+ .+++++|+.+++++.+. ..|+++. .. + .++++
T Consensus 3 ~~~~~l-r~~Gpv~~~--g~--------~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 70 (368)
T 1io7_A 3 DWFSEM-RKKDPVYYD--GN--------IWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLT 70 (368)
T ss_dssp HHHHHH-HHHCSEEEC--SS--------CEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGG
T ss_pred HHHHHH-HhcCCeEeE--CC--------EEEEecHHHHHHHHcCc-cccccccccccccccccccccccccccccccccc
Confidence 456666 589999976 33 58999999999999854 3454431 11 1 55666
Q ss_pred cCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCcc
Q 048119 109 LPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPN 187 (266)
Q Consensus 109 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 187 (266)
.+ |+.|+++||.+++. |+.++++.+.+.+.++++++++.| + .+ ++|+.+++ ..+++|+++.+ ||.+.+..
T Consensus 71 ~~-g~~h~~~R~~~~~~-f~~~~~~~~~~~i~~~~~~l~~~l-~---~g-~~d~~~~~~~~~~~~vi~~~-~G~~~~~~- 141 (368)
T 1io7_A 71 SD-PPLHDELRSMSADI-FSPQKLQTLETFIRETTRSLLDSI-D---PR-EDDIVKKLAVPLPIIVISKI-LGLPIEDK- 141 (368)
T ss_dssp CC-TTHHHHHHGGGTTT-TCHHHHHHHHHHHHHHHHHHHHTC-C---TT-SEEHHHHTTTHHHHHHHHHH-HTCCGGGH-
T ss_pred CC-ChHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHh-h---cC-CccHHHHHHHHHHHHHHHHH-hCCCHHHH-
Confidence 64 99999999999965 999999999999999999999998 3 23 69999876 78999999999 99876532
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHhc
Q 048119 188 ERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSISIKSKDMLDTVLNI 257 (266)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~l~~ll~~ 257 (266)
+.+.... ..+.. .. .-|. ..++..+..+.+.+++.+.+ +..+|+++.|++.
T Consensus 142 -~~~~~~~----~~~~~-----~~----~~p~--~~~~~~~~~~~~~~~~~~~i---~~~~d~l~~ll~~ 192 (368)
T 1io7_A 142 -EKFKEWS----DLVAF-----RL----GKPG--EIFELGKKYLELIGYVKDHL---NSGTEVVSRVVNS 192 (368)
T ss_dssp -HHHHHHG----GGCTT-----SC----CCTT--CHHHHHHHHHHHHHHHHHHT---TSSCHHHHHHHTS
T ss_pred -HHHHHHH----HHHHh-----cc----CChH--HHHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHhc
Confidence 2332221 11111 00 0121 12455667777888888888 3456999999975
No 72
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.54 E-value=9.7e-14 Score=115.73 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=117.3
Q ss_pred HHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC---------------CCCC----Ccccc
Q 048119 48 KSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR---------------KHHE----FSLVW 108 (266)
Q Consensus 48 ~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~---------------~~~~----~~l~~ 108 (266)
..+.++ ++||||+++. |. +++++|+.+++++.+. ..|+++ ...| .++++
T Consensus 3 ~~~~~l-r~~gpv~~~~-g~---------~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (367)
T 3b4x_A 3 DWFKQM-RKESPVYYDG-KV---------WNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLT 70 (367)
T ss_dssp HHHHHH-HHHCSEEECS-SS---------EEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGG
T ss_pred HHHHHH-HHcCCceeeC-CE---------EEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhccccccccc
Confidence 355666 5799999887 43 8999999999999854 245443 1113 56776
Q ss_pred cCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCcc
Q 048119 109 LPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPN 187 (266)
Q Consensus 109 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 187 (266)
.+ |+.|+++||.+++. |+.++++. +.+.++++++++.|. | .+|+.+++ ..+++|+|+. +||.+ +.
T Consensus 71 ~d-g~~h~~~R~~~~~~-fs~~~l~~--~~i~~~~~~l~~~l~-----g-~~d~~~~~~~~~~~~vi~~-~~G~~-~~-- 136 (367)
T 3b4x_A 71 SD-PPLHDELRNLTADA-FNPSNLPV--DFVREVTVKLLSELD-----E-EFDVIESFAIPLPILVISK-MLGIN-PD-- 136 (367)
T ss_dssp CC-TTHHHHHHHTTGGG-GSGGGSCH--HHHHHHHHHHHHTCC-----S-EEEHHHHTTTHHHHHHHHH-HHTCC-CC--
T ss_pred CC-chhHHHHHHHHHHh-cCHhhhcc--hHHHHHHHHHHHhcc-----C-CcchHHHHHHhhHHHHHHH-HcCCC-Cc--
Confidence 65 99999999999976 99999887 999999999998875 3 49999765 7999999999 79998 42
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhc
Q 048119 188 ERKFKDTVWGMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNI 257 (266)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~ 257 (266)
.+.+......+...+. ..|.. .++. +..+.+.+++.+.++++ ...+|+++.|+++
T Consensus 137 ~~~~~~~~~~~~~~~~------~~p~~--------~~~~-~~~~~~~~~~~~~i~~r~~~~~~dll~~ll~~ 193 (367)
T 3b4x_A 137 VKKVKDWSDLVALRLG------RADEI--------FSIG-RKYLELISFSKKELDSRKGKEIVDLTGKIANS 193 (367)
T ss_dssp HHHHHHHHHHHHTTTT------STTGG--------GCCC-HHHHHHHHHHHHHHHHHTTTCCSSHHHHHHTS
T ss_pred HHHHHHHHHHHHhccC------CChhh--------HHHH-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 2555555544432211 12211 1111 44455556666666532 3457999999975
No 73
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.50 E-value=6e-13 Score=112.01 Aligned_cols=180 Identities=15% Similarity=0.125 Sum_probs=123.9
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC-------C--CCCCcccccCCChhHHH
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-------K--HHEFSLVWLPVSTLWRS 117 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-------~--~~~~~l~~~~~g~~w~~ 117 (266)
+..+.++++ +|||+++..| .+++++++.+++++... .|+.+ . ..+.+++.. +|+.|++
T Consensus 23 ~~~~~~lr~-~~pv~~~~~g---------~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~l~~~-dg~~h~~ 89 (394)
T 2wiy_A 23 YPWYRRLQQ-DHPVHKLEDG---------TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDTALGS-DPPHHTV 89 (394)
T ss_dssp HHHHHHHHH-HCSEEECTTS---------CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGSGGGC-CTTHHHH
T ss_pred cHHHHHHHh-cCCeEEecCC---------eEEEcCHHHHHHHHcCC--CccccccccccccchhcccccccC-CchHHHH
Confidence 556677755 4899876432 48899999999999532 34322 1 123456555 5999999
Q ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHH
Q 048119 118 YRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAAFNTSINLLPNTIFSIDLVHPNERKFKDTVWG 197 (266)
Q Consensus 118 ~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~ 197 (266)
+||++++. |+.++++.+.+.+.+.++++++.+. .++++|+.+.+..+++++++..+||.+.+.. ..+.+.+..
T Consensus 90 ~R~~~~~~-fs~~~~~~~~~~i~~~~~~l~~~~~----~~~~~d~~~~~~~~~~~vi~~~~~G~~~~~~--~~~~~~~~~ 162 (394)
T 2wiy_A 90 LRRQTNKW-FTPKLVDGWVRTTRELVGDLLDGVE----AGQVIEARRDLAVVPTHVTMARVLQLPEDDA--DAVMEAMFE 162 (394)
T ss_dssp HHHHHHTT-CSHHHHHHHTHHHHHHHHHHHHTCC----TTCCEEHHHHHTHHHHHHHHHHHHTCCCCCH--HHHHHHHHH
T ss_pred HHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHHHh----ccCCeeHHHHHHhhhHHHHHHHHcCCCHhHH--HHHHHHHHH
Confidence 99999965 9999999999999999999998874 2457999999999999999999999875432 444433322
Q ss_pred HHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhcc
Q 048119 198 MMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNII 258 (266)
Q Consensus 198 ~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~ 258 (266)
.. .. ....| .....++..+..+.+.+++.+.|+++ +..+|+++.|++..
T Consensus 163 ~~---~~---~~~~p------~~~~~~~~~~~~~~l~~~~~~~i~~rr~~~~~dll~~Ll~~~ 213 (394)
T 2wiy_A 163 AM---LM---QSAEP------ADGDVDRAAVAFGYLSARVAEMLEDKRVNPGDGLADSLLDAA 213 (394)
T ss_dssp HH---GG---GSSSC------CTTHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHH
T ss_pred HH---Hh---ccCCc------cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHhh
Confidence 21 10 00112 11222444555666777777777632 34569999999764
No 74
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.49 E-value=2.3e-14 Score=121.49 Aligned_cols=179 Identities=12% Similarity=0.054 Sum_probs=123.5
Q ss_pred HHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC------C-C-------CCCcccccCCChhHHH
Q 048119 52 KLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR------K-H-------HEFSLVWLPVSTLWRS 117 (266)
Q Consensus 52 ~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~------~-~-------~~~~l~~~~~g~~w~~ 117 (266)
++.++|||++.+..++ .. ++|++++.+++|+.+....+..+ . . .+.+++.. +|++|++
T Consensus 39 ~~lr~~gpv~~~~~g~------~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-dg~~h~~ 110 (416)
T 3p3o_A 39 PEVAEAREKSWIARTP------LA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSL-DGADHRR 110 (416)
T ss_dssp HHHHHHHHHCSEEECS------SS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHHSGGGC-CHHHHHH
T ss_pred HHHHHhCCccccccCC------Cc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcCccccC-CchHHHH
Confidence 5556799999988876 56 99999999999997543111111 1 0 13355556 5999999
Q ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccHHHHHHHHH
Q 048119 118 YRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNERKFKDTVW 196 (266)
Q Consensus 118 ~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~ 196 (266)
+||++++. |+.++++.+.+.+.++++++++.| . . +.+|+...+ ..+++++|+. +||.+.+.. +.+.....
T Consensus 111 ~Rr~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l-~---~-g~~d~~~~~~~~~~~~vi~~-l~G~~~~~~--~~~~~~~~ 181 (416)
T 3p3o_A 111 LRGLATHP-FTPRRITAVQPFVRSTVEQLIDKL-P---Q-GDFDFVQHFPHPLPALVMCQ-LLGFPLEDY--DTVGRLSI 181 (416)
T ss_dssp HHHTTCGG-GSHHHHHHHHHHHHHHHHHHHHTC-C---S-SSEEHHHHTTTHHHHHHHHH-HHTCCGGGH--HHHHHHHH
T ss_pred HHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHhh-c---c-CCccHHHHHHHHHHHHHHHH-HhCCCHHHH--HHHHHHHH
Confidence 99999966 999999999999999999999998 3 3 358965554 5799999998 589765432 33333222
Q ss_pred HHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhcC--CCCCCHHHHHHhccc
Q 048119 197 GMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSIS--IKSKDMLDTVLNIIQ 259 (266)
Q Consensus 197 ~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~d~l~~ll~~~~ 259 (266)
.+.. .+.. .......++..+..+.+.+++.+.|+++ ...+|+++.|+++.+
T Consensus 182 ~~~~---------~~~~---~~~~~~~~~~~~~~~~l~~~~~~~i~~rr~~~~~dll~~ll~~~~ 234 (416)
T 3p3o_A 182 ETNL---------GLAL---SNDQDILVKVEQGLGRMFDYLVAAIEKRKVEPGDDLTSDIVRAFH 234 (416)
T ss_dssp TTCG---------GGTT---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHH
T ss_pred HHHh---------hccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhc
Confidence 2111 1111 0112234566777778888888888743 356799999998654
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.35 E-value=3.2e-11 Score=102.03 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=94.4
Q ss_pred CCCccccccc---------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC--------
Q 048119 37 RPYPVIGNLL---------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR-------- 99 (266)
Q Consensus 37 ~~~p~~G~~~---------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~-------- 99 (266)
.++|.+|--+ +.++.+++ ++|||+++ ++ .+.++|++++.+++++... ..|+..
T Consensus 18 ~~~P~~~~dp~~~~~~~dP~~~~~~lR-~~gPV~~~--~~------~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~ 87 (412)
T 4dnj_A 18 AGVPHLGIDPFALDYFADPYPEQETLR-EAGPVVYL--DK------WNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDF 87 (412)
T ss_dssp TTSCEECCCTTSHHHHHSCHHHHHHHH-HHCSSEEE--TT------TTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCT
T ss_pred CCCCccCCCCCCHHHHhCcHHHHHHHH-hcCCEEEE--CC------CCEEEECCHHHHHHHHcCC-ccccCCCccccccc
Confidence 4677776322 55666665 46999854 45 5678999999999999643 334322
Q ss_pred ----CCC-CCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccH-HHHHHHHHHHH
Q 048119 100 ----KHH-EFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDF-GQAAFNTSINL 173 (266)
Q Consensus 100 ----~~~-~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~-~~~~~~~~~~v 173 (266)
... +..++.+ +|++|+++||+++++ |+.++++.+.+.+.+.++++++.+.+ .++.+|+ .+....+++++
T Consensus 88 ~~~~~~~~~~~~~~~-Dg~~H~r~R~~~~~~-Fs~~~l~~~~~~i~~~~~~l~~~~~~---~~~~~D~v~~~~~~~~~~~ 162 (412)
T 4dnj_A 88 KKEKPWRPPSLILEA-DPPAHTRTRAVLSKV-LSPATMKRLRDGFAAAADAKIDELLA---RGGNIDAIADLAEAYPLSV 162 (412)
T ss_dssp TTSCCSSCCCTTTTC-CTTHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHHH---TTSEEETCCCCCCHHHHHH
T ss_pred cccccccCCCccccC-ChHHHHHHHhhcccc-cCHHHHHHhhHHHHHHHHHHHHhhhc---cCCCceeHHHHHhhhhHhH
Confidence 112 2334445 599999999999976 99999999999999999999999866 3456664 55666788888
Q ss_pred HHHHHhcCCc
Q 048119 174 LPNTIFSIDL 183 (266)
Q Consensus 174 i~~~~fG~~~ 183 (266)
++.+ +|...
T Consensus 163 i~~l-~g~~~ 171 (412)
T 4dnj_A 163 FPDA-MGLKQ 171 (412)
T ss_dssp HHHH-HTCCS
T ss_pred HHHH-cCCch
Confidence 8876 45433
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.20 E-value=1.2e-09 Score=92.51 Aligned_cols=185 Identities=10% Similarity=0.055 Sum_probs=116.7
Q ss_pred hHHHHHHHHhcC-CcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC--------CCCCCcccccCCChhHHH
Q 048119 47 HKSLAKLAKIHG-PIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR--------KHHEFSLVWLPVSTLWRS 117 (266)
Q Consensus 47 ~~~~~~~~~~yG-~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~--------~~~~~~l~~~~~g~~w~~ 117 (266)
+..+.++++..+ +++..-.++ ...+|+..+.+++|+.. ...|+.. ...+..++...++++|++
T Consensus 40 ~~~~~~lr~~~~~~~~~~~~~g-------g~W~vtr~~dv~~vl~d-~~~fs~~~~~~~~~~~~~~~~~~~~~D~p~H~r 111 (417)
T 4dxy_A 40 HEAWKKVQHPGIPDLIWTPFTG-------GHWIATNGDTVKEVYSD-PTRFSSEVIFLPKEAGEKAQMVPTKMDPPEHTP 111 (417)
T ss_dssp HHHHHHHSCTTCCSEEEESSTT-------SEEEECSHHHHHHHHTC-TTTEESSCCSSSTTSSCSSCTTTTTCCTTTHHH
T ss_pred HHHHHHHHhhCCCCEEecCCCC-------CEEEECCHHHHHHHHcC-chhccCCCcccccccccccccCcccCCcHHHHH
Confidence 556666655533 454333333 45788999999999964 3346543 111222333335999999
Q ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHHHH-HHHHHHHHHHHHhcCCccCccHHHHHHHHH
Q 048119 118 YRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQAA-FNTSINLLPNTIFSIDLVHPNERKFKDTVW 196 (266)
Q Consensus 118 ~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~ 196 (266)
+||+++++ |+.++++.+.|.+.+.++++++.+.. ++.+|+...+ ..+++.+++.+ +|...+.. ..+.+...
T Consensus 112 ~Rrll~~~-Fs~~~l~~~~~~i~~~~~~lld~l~~----~g~~D~v~~~a~~l~~~vi~~l-lg~~~~d~--~~~~~~~~ 183 (417)
T 4dxy_A 112 YRKALDKG-LNLAKIRKVEDKVREVASSLIDSFAA----RGECDFAAEYAELFPVHVFMAL-ADLPLEDI--PVLSEYAR 183 (417)
T ss_dssp HHHHHHHH-HCHHHHHTTHHHHHHHHHHHHHHHHT----TSEEEHHHHTTTTHHHHHHHHH-TTCCGGGH--HHHHHHHH
T ss_pred HHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHhhh----cCCeeeHHHHHhhhHHHHHHHH-cCCCHHHH--HHHHhhhh
Confidence 99999976 99999999999999999999998865 3467765544 55667777654 77654332 33433333
Q ss_pred HHHHHhCCCCccchhcccccCCCcchHHHHHHHHHHHHHHHhhhhhc--CCCCCCHHHHHHhcccc
Q 048119 197 GMMEEAGKPNLSDHFPLLKKLDLQGTRHRNTLYAGEMFEVQEHGCSI--SIKSKDMLDTVLNIIQD 260 (266)
Q Consensus 197 ~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~d~l~~ll~~~~~ 260 (266)
.+.. . . ...+ ...........+.+.+++.+.+++ ....+|+++.|+.+..+
T Consensus 184 ~~~~---~---~------~~~~-~~~~~~~~~~~~~~~~~~~~li~~rr~~~~ddl~s~L~~~~~~ 236 (417)
T 4dxy_A 184 QMTR---P---E------GNTP-EEMATDLEAGNNGFYAYVDPIIRARVGGDGDDLITLMVNSEIN 236 (417)
T ss_dssp HHHS---C---C------CSSH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHTCEET
T ss_pred hhcc---c---c------ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcccccc
Confidence 2211 1 0 0111 122345556667777788887763 34567999999986543
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=97.80 E-value=9.6e-08 Score=79.56 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=76.3
Q ss_pred CCCC-CCCCccccccc-----------hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHHcCccccCC
Q 048119 32 LPPG-LRPYPVIGNLL-----------HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKEHDSLFCDR 99 (266)
Q Consensus 32 ~ppg-p~~~p~~G~~~-----------~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~~~ 99 (266)
.||| +++||++|+.. +.++.+++++ ||++.. . +.+++++++.+++|+.. ..|+++
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~--~-------~~~vv~~~~~v~~vl~d--~~f~~~ 101 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR--T-------ETWVVADHATARQVLDD--PAFTRA 101 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS--S-------SCEEECSHHHHHHHHHC--SSEESS
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC--C-------CEEEEcCHHHHHHHHcC--CCcCCC
Confidence 3566 44678888652 5678888765 998654 2 46899999999999975 245543
Q ss_pred C--C-------------CCCcccccCCChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhCCccccHHH
Q 048119 100 K--H-------------HEFSLVWLPVSTLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCRAGKAIDFGQ 164 (266)
Q Consensus 100 ~--~-------------~~~~l~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ 164 (266)
. + .+.++++.+ |++| +++ |+ . .+.+.+.++++++.|. +++|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~d-g~~H-------~~~-Ft-----~-~~~i~~~~~~ll~~~~------g~~Dl~~ 160 (381)
T 2yjn_B 102 TGRTPEWMRAAGAPPAEWAQPFRDVH-AASW-------EGE-VP-----D-VGELAESFAGLLPGAG------ARLDLVG 160 (381)
T ss_dssp CCCCCHHHHHHTCCHHHHTHHHHHHH-HCCC-------CSC-CC-----C-CSCHHHHTSTTSCC------------CCC
T ss_pred cccccccccccccccchhhhhhhhCC-chhh-------hhc-cC-----C-hHHHHHHHHHHHHhcc------CcchHHH
Confidence 1 1 023455554 8888 444 77 3 7888999999988875 2688886
Q ss_pred HH-HHHHHHHHHHHHhcCCccC
Q 048119 165 AA-FNTSINLLPNTIFSIDLVH 185 (266)
Q Consensus 165 ~~-~~~~~~vi~~~~fG~~~~~ 185 (266)
++ ..+++++|+.+ ||.+.+.
T Consensus 161 ~~a~~l~~~vi~~l-~G~~~~~ 181 (381)
T 2yjn_B 161 DFAWQVPVQGMTAV-LGAAGVL 181 (381)
T ss_dssp CCCTHHHHHHHHTC------CC
T ss_pred HHHHHHHHHHHHHH-cCCCHHH
Confidence 65 69999999995 9987653
No 78
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=80.20 E-value=8.7 Score=25.05 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=40.8
Q ss_pred CCCCCCCCccccccc----hHHHHHHHHhcCCcEEEecC------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 32 LPPGLRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLG------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 32 ~ppgp~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.||.|...-++||+. ...+.++..+||+|..+.+. + .-.|-..+++.+..++..
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g------~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRG------TAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTT------CEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCc------EEEEEECCHHHHHHHHHH
Confidence 456666566778887 66788888999999888761 2 356788899999888863
No 79
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=71.62 E-value=9.3 Score=22.48 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=32.7
Q ss_pred ccccc----hHHHHHHHHhcCCcEEEecCccc---cCCceEEEEeCCHHHHHHHHHHc
Q 048119 42 IGNLL----HKSLAKLAKIHGPIMNLRLGVRL---SFNLVTTVVVSSPSTAKAILKEH 92 (266)
Q Consensus 42 ~G~~~----~~~~~~~~~~yG~i~~~~~~~~~---~~~~~~~v~v~dp~~~~~i~~~~ 92 (266)
+|++. ...+.++..+||+|..+.+..-. .....-.|-..+++.++.++..+
T Consensus 4 v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 61 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61 (75)
T ss_dssp ESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhC
Confidence 45554 56778888899998887763100 00003456778999999988643
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.91 E-value=12 Score=24.01 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=35.1
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecC--------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLG--------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~--------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+. | --.|...+++.++.++..
T Consensus 14 lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG------~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 14 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG------SIFVVFDSIESAKKFVET 71 (103)
T ss_dssp EEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCC------EEEEEESSHHHHHHHHTS
T ss_pred EEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCcc------EEEEEECCHHHHHHHHHc
Confidence 4567777 66788888999999877653 3 356778899999999863
No 81
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=69.92 E-value=11 Score=23.33 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=35.8
Q ss_pred CCCCCCCccccccc----hHHHHHHHHhcCCcEEEecC----ccccCCceEEEEeCCHHHHHHH
Q 048119 33 PPGLRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLG----VRLSFNLVTTVVVSSPSTAKAI 88 (266)
Q Consensus 33 ppgp~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~----~~~~~~~~~~v~v~dp~~~~~i 88 (266)
++.|...-++|++. .+.+.++..+||+|..+.+. | --.|-..+++.++.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srG------faFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRA------FAFVTFADDKVAQSL 64 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCS------EEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCC------EEEEEECCHHHHHHH
Confidence 34444556779888 66788888999999888864 4 467788899998854
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=67.06 E-value=17 Score=22.90 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=36.4
Q ss_pred CCCccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHH
Q 048119 37 RPYPVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 37 ~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~ 90 (266)
..|-++||+. ...+.++..+||||..+++. | --.|-..+++.+.....
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kG------faFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQG------IALCKYTTREEANKAQM 61 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTT------EEEEEESSHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCc------EEEEEECCHHHHHHHHH
Confidence 3567789988 77889999999999887743 3 45677778877776665
No 83
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.14 E-value=25 Score=22.45 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=34.7
Q ss_pred cccccc--------hHHHHHHHHhcC-CcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL--------HKSLAKLAKIHG-PIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~--------~~~~~~~~~~yG-~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.++|+. ...+.++..+|| +|..+ .+| .-.|...+.+.++..+.+
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG------~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGC------SAILRFINQDSAERAQKR 65 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTT------CEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecC------EEEEEECCHHHHHHHHHH
Confidence 478988 234667889995 98888 457 789999999999988864
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=60.65 E-value=22 Score=20.75 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=31.3
Q ss_pred ccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHH
Q 048119 42 IGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 42 ~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~ 90 (266)
+|++. ...+.++..+||+|..+.+..-. + ...--.|-..+++.++.++.
T Consensus 4 v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 4 VGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 45554 56778888899998887753200 0 00024566789999988875
No 85
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.33 E-value=30 Score=21.29 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=37.6
Q ss_pred CCCCCCccccccc----hHHHHHHHHhcCCcEEEecCcccc--C-CceEEEEeCCHHHHHHHHHH
Q 048119 34 PGLRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS--F-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 34 pgp~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~--~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
|.|...-++|++. ...+.++..+||+|..+.+..-.. . ...-.|-..+++.++.++..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 4444455678887 667888889999988776521000 0 00235667899999998864
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.32 E-value=40 Score=21.84 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=39.1
Q ss_pred CCCCCCccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 34 PGLRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 34 pgp~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
|.|..--++||+. ...+.++..+||.|..+.+. + .-.|-..+++.+......
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kG------faFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN------QAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTT------EEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCC------EEEEEECCHHHHHHHHHH
Confidence 3344456779988 66788899999999887753 3 457888899999888863
No 87
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.32 E-value=39 Score=21.52 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=36.5
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecC--ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLG--VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~--~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.++.++..
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g------~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 18 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG------TGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTT------EEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCC------EEEEEECCHHHHHHHHHH
Confidence 4668887 67788888999998877753 4 567888999999988864
No 88
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=53.66 E-value=47 Score=23.56 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=35.0
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
++||+. .+.+.++..+||.|-++.+..-.+ .-.-.|-..|++.+......
T Consensus 50 ~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~-rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 50 IVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN-QFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp EECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSS-CEEEEEEESCHHHHHHHHHH
T ss_pred EEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-CCEEEEEECCHHHHHHHHHH
Confidence 368887 667888999999998877631000 00356778899988888864
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.86 E-value=24 Score=21.26 Aligned_cols=55 Identities=22% Similarity=0.150 Sum_probs=34.4
Q ss_pred CCCCccccccc----hHHHHHHHHhcCCcEEEecCcc-cc--CCceEEEEeCCHHHHHHHHH
Q 048119 36 LRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVR-LS--FNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 36 p~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~--~~~~~~v~v~dp~~~~~i~~ 90 (266)
|...-++|++. ...+.++..+||+|..+.+..- .. ...--.|-..+++.++.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 33345668877 5567777788999887764210 00 00024577789998888875
No 90
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=49.80 E-value=31 Score=20.77 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=35.4
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCcc-cc-C-CceEEEEeCCHHHHHHHHHHc
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVR-LS-F-NLVTTVVVSSPSTAKAILKEH 92 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~-~-~~~~~v~v~dp~~~~~i~~~~ 92 (266)
..-++|++. ...+.++..+||+|..+.+..- .+ . ..--.|-..+++.++.++...
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 345668887 6678888899999887765210 00 0 002456678999998888543
No 91
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=49.65 E-value=39 Score=21.93 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=36.2
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecC--ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLG--VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~--~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++||+. .+.+.++..+||+|..+.+. + .-.|-..+++.++.++..
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g------~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG------TGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTS------EEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCC------EEEEEECCHHHHHHHHHH
Confidence 4568887 66788888999999887753 4 567888899999988864
No 92
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.31 E-value=46 Score=20.84 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=37.8
Q ss_pred CCCCCCccccccc----hHHHHHHHHh-cCCcEEEecC--------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 34 PGLRPYPVIGNLL----HKSLAKLAKI-HGPIMNLRLG--------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 34 pgp~~~p~~G~~~----~~~~~~~~~~-yG~i~~~~~~--------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
+.|...-++|++. ...+.++..+ ||+|..+.+. + .-.|-..+++.+..++..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g------~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKG------YGFVKFTDELEQKRALTE 70 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEE------EEEEEESCHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccc------eEEEEECCHHHHHHHHHH
Confidence 3444556778887 6677888888 9998877652 2 245677899999999864
No 93
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=48.76 E-value=43 Score=21.62 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=35.7
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecC-----ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLG-----VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~-----~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
--++|++. ...+.++..+||+|..+.+. +- + .---.|...+++.++..+..
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~-~-rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRK-H-LGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-E-EEEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCc-e-eeEEEEEECCHHHHHHHHHH
Confidence 34668887 66788888999999887652 10 0 00236778899999998864
No 94
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=48.02 E-value=49 Score=20.78 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=34.2
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCcc-ccCCc--eEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVR-LSFNL--VTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~~~~--~~~v~v~dp~~~~~i~~~ 91 (266)
-++||++ .+.+.++..+||+|..+.+..- .+-.. --.|-..+++.++.++..
T Consensus 22 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 4668887 6678888899999987765210 00000 125677899999888854
No 95
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=47.84 E-value=48 Score=21.55 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=36.7
Q ss_pred Cccccccc----hHHHHHHHHhcC-CcEEEecC-----ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHG-PIMNLRLG-----VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG-~i~~~~~~-----~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++||+. .+.+.++..+|| .|..+.+. | .-.|-..+++.++..+..
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rG------faFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDG------TGALEFPSEEILVEALER 86 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSC------CEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCC------EEEEEECCHHHHHHHHHH
Confidence 45668887 778888899999 78777763 4 467888899999988864
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.82 E-value=45 Score=20.26 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. ...+.++..+||+|..+.+... .-.|-..+++.++.++..
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g-----~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-----YGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETT-----EEEEEESSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----EEEEEECCHHHHHHHHHH
Confidence 344668877 6678888899999888775321 567788899999998853
No 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=47.74 E-value=59 Score=21.64 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=37.8
Q ss_pred CCCCCccccccc----hHHHHHHHHhcCCcEEEecCcc-c--cCCceEEEEeCCHHHHHHHHHH
Q 048119 35 GLRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVR-L--SFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 35 gp~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~--~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.|...-++|++. ...+.++..+||+|..+.+..- . .....-.|-..+++.++.++..
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 344455678887 6678888899999988776310 0 0000245677899999998864
No 98
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.89 E-value=55 Score=21.03 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=34.7
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
++||+. ...+.++..+||+|..+.+... ...-.|-..+++.++..+..
T Consensus 14 ~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 14 LAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---GITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEECCSS---SSCEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEeCCHHHHHHHHHH
Confidence 557766 6678888899999988886320 00456778899999988864
No 99
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=46.63 E-value=50 Score=20.49 Aligned_cols=58 Identities=22% Similarity=0.101 Sum_probs=35.2
Q ss_pred CCCCCCccccccc----hHHHHHHHHhcCCcEE--------EecCcc-cc-C-CceEEEEeCCHHHHHHHHHH
Q 048119 34 PGLRPYPVIGNLL----HKSLAKLAKIHGPIMN--------LRLGVR-LS-F-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 34 pgp~~~p~~G~~~----~~~~~~~~~~yG~i~~--------~~~~~~-~~-~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
|.|...-++|++. .+.+.++..+||.|.. +.+..- .. . ...-.|-..+++.++.++..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 3333445678887 6678888899998866 443210 00 0 00235667788988888853
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=46.44 E-value=59 Score=21.25 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=35.8
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+..-. . ....-.|-..+++.+..++..
T Consensus 25 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 83 (126)
T 3ex7_B 25 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 83 (126)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4668877 66788888999999888763100 0 000356788899999999863
No 101
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=46.40 E-value=42 Score=22.71 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=35.4
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-.+||+. .+.+.++..+||.|-.+.+..- +..-+-.|-..+++.++.....
T Consensus 31 I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 31 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHH
Confidence 3478886 6788899999999888775420 0000357888899888888753
No 102
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.21 E-value=57 Score=21.63 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=37.0
Q ss_pred CCCCccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHH
Q 048119 36 LRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 36 p~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~ 90 (266)
|...-++|++. ...+.++..+||.|..+.+. + .-.|-..+++.+..++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG------~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN------QAFIEMNTEEAANTMVN 85 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGT------EEEEECSCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCC------EEEEEECCHHHHHHHHH
Confidence 33445779988 66788889999998877754 3 45677889998888875
No 103
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.66 E-value=50 Score=20.20 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=35.6
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCcccc---CCceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS---FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~---~~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. ...+.++..+||+|..+.+..-.. ....-.|-..+++.++.++..
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 344567777 667888889999988776532000 000245777899999998863
No 104
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=45.51 E-value=56 Score=20.88 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=34.6
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCcc-cc--CCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVR-LS--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+..- .+ ....-.|-..+++.+..++..
T Consensus 29 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 29 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp EEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4568887 6678888899999877765310 00 000245677899999998863
No 105
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.14 E-value=54 Score=20.47 Aligned_cols=58 Identities=21% Similarity=0.084 Sum_probs=37.6
Q ss_pred CCCCCCccccccc----hHHHHHHHHhcCCcEEEecCcccc-CCceEEEEeCCHHHHHHHHHH
Q 048119 34 PGLRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS-FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 34 pgp~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~-~~~~~~v~v~dp~~~~~i~~~ 91 (266)
+.+...-++|++. ...+.++..+||+|..+.+..-.. ....-.|-..+++.+..++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH
Confidence 3444556778887 667778888999988776541000 000245677899999998864
No 106
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=44.83 E-value=54 Score=21.20 Aligned_cols=52 Identities=17% Similarity=0.108 Sum_probs=35.3
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccccC-CceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSF-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. .+.+.++..+||+|..+.+..-... ..--.|-..+++.++..+..
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 4668887 6688888999999987765310000 00246788899999998864
No 107
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=44.16 E-value=49 Score=19.66 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=35.9
Q ss_pred CCCccccccc----hHHHHHHHHhcCCcEEEecCcc-cc--CCceEEEEeCCHHHHHHHHHH
Q 048119 37 RPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVR-LS--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 37 ~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
...-++|++. ...+.++..+||+|..+.+..- .. ....-.|-..+++.++.++..
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 3345667776 6678888899999988876210 00 000246778899999888853
No 108
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=43.54 E-value=49 Score=19.76 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=33.7
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccc-c-C-CceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S-F-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~-~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+..-. . . ...-.|-..+++.++.++..
T Consensus 9 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 9 VFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4567776 66788888999998777652100 0 0 00235667899999988864
No 109
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=43.38 E-value=58 Score=20.25 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=32.6
Q ss_pred ccccc----hHHHHHHHHhcCCcEEEecC----ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 42 IGNLL----HKSLAKLAKIHGPIMNLRLG----VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 42 ~G~~~----~~~~~~~~~~yG~i~~~~~~----~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
+|++. ...+.++..+||+|..+.+. + .-.|-..+++.+..++..
T Consensus 5 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g------~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFSYYGPLRTVWIARNPPG------FAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp EECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSS------EEEEECSSHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC------EEEEEECCHHHHHHHHHH
Confidence 45555 56778888999998777652 3 456778899999998863
No 110
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=43.03 E-value=60 Score=20.36 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=34.7
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecC---------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLG---------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~---------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.+..++..
T Consensus 26 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g------~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 26 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKG------YTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEE------EEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceee------EEEEEECCHHHHHHHHHH
Confidence 4568887 66788888999999887753 2 245677899999988864
No 111
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.92 E-value=58 Score=20.18 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=36.4
Q ss_pred CCCccccccc----hHHHHHHHHhcCCcEEEecCcccc-C-CceEEEEeCCHHHHHHHHHH
Q 048119 37 RPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS-F-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 37 ~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~-~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
...-++|++. ...+.++..+||+|..+.+..-.. . ...-.|-..+++.++.++..
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 3445678887 667888889999988777531000 0 00346778899999998854
No 112
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.10 E-value=57 Score=19.86 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=36.9
Q ss_pred CCCCccccccc----hHHHHHHHHhcCCcEEEecCcccc---CCceEEEEeCCHHHHHHHHHH
Q 048119 36 LRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS---FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 36 p~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~---~~~~~~v~v~dp~~~~~i~~~ 91 (266)
+...-++|++. .+.+.++..+||+|..+.+..-.. ....-.|-..+++.++.++..
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 33445678887 667888888999998877631000 000246778899999888853
No 113
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=41.57 E-value=58 Score=19.74 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=34.7
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecC-------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLG-------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~-------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.++.++..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g------~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKG------CGVVKFESPEVAERACRM 67 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEE------EEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcce------EEEEEECCHHHHHHHHHH
Confidence 34568877 66788888999998777653 2 345677899999988864
No 114
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=41.16 E-value=55 Score=19.36 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCcEEEecC-------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 48 KSLAKLAKIHGPIMNLRLG-------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 48 ~~~~~~~~~yG~i~~~~~~-------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
..+.++..+||+|..+.+. | --.|-..+++.+...+..
T Consensus 22 ~~l~~~F~~~G~i~~v~i~~~~g~~~g------~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 22 NVIHKIFSKFGKITNDFYPEEDGKTKG------YIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHHHHHHTTCCEEEEECCCBTTBCCC------EEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHhhcCCeEEEEecCCCCcEeE------EEEEEECCHHHHHHHHHH
Confidence 5677778899999888764 3 356778899999988853
No 115
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.09 E-value=65 Score=20.17 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=36.5
Q ss_pred CCCCCCCccccccc----hHHHHHHHHhcCCcEEEecCcccc----CCceEEEEeCCHHHHHHHHH
Q 048119 33 PPGLRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS----FNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 33 ppgp~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~----~~~~~~v~v~dp~~~~~i~~ 90 (266)
|..|...-++|++. ...+.++..+|| |..+.+..-.. ....-.|-..+++.++.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHG
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHh
Confidence 33344445678887 667788888999 88887631000 00024677889999999883
No 116
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.04 E-value=65 Score=20.18 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=36.6
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCccc-c-CC-ceEEEEeCCHHHHHHHHHHcC
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S-FN-LVTTVVVSSPSTAKAILKEHD 93 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~-~~-~~~~v~v~dp~~~~~i~~~~~ 93 (266)
..-++|++. ...+.++..+||+|..+.+..-. . .. ..-.|-..+++.++.++..+.
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~ 79 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 79 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCC
Confidence 345678887 66788888999998777653200 0 00 023567789999999987643
No 117
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=40.75 E-value=76 Score=22.06 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=34.9
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecC---------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLG---------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~---------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.+..++..
T Consensus 75 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g------~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKG------YALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEE------EEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEee------EEEEEECCHHHHHHHHHH
Confidence 4668887 66788888999998877653 2 345677899999988864
No 118
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=40.47 E-value=48 Score=21.62 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=32.8
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCcc-cc--CCceEEEEeCCHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVR-LS--FNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~--~~~~~~v~v~dp~~~~~i~~ 90 (266)
++|++. ...+.++..+||+|..+.+..- .. ....-.|-..+++.++.++.
T Consensus 40 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 96 (124)
T 2jwn_A 40 YVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp EEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Confidence 557766 6678888899999877765210 00 00024577889999998883
No 119
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=40.34 E-value=62 Score=19.74 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=34.8
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCcccc-C-CceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS-F-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~-~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+..-.. . ...-.|-..+++.++.++..
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 34567777 667888889999988776531000 0 00245677899999888863
No 120
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=40.32 E-value=69 Score=20.27 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=35.6
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+..-. . ....-.|-..+++.+..++..
T Consensus 29 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 29 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4568887 66788888999999888763100 0 000356778899999988863
No 121
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.87 E-value=62 Score=19.59 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=38.0
Q ss_pred CCCCccccccc----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 36 LRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 36 p~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
+...-++|++. ...+.++..+||+|..+.+... .-.|-..+++.++.++..
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-----YAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-----CEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-----EEEEEECCHHHHHHHHHH
Confidence 33445678887 6678888899999988875431 456778899999988864
No 122
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=39.31 E-value=70 Score=20.07 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=34.2
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCcccc-C-CceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS-F-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~-~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+..-.. . ...-.|-..+++.++.++..
T Consensus 32 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 32 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4668887 667888889999987766531000 0 00245667899999988864
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=39.29 E-value=73 Score=20.30 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=35.8
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEec-CccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRL-GVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~-~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+ -+ .-.|-..+++.+..++..
T Consensus 34 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg------~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 34 LFVRPFPLDVQESELNEIFGPFGPMKEVKILNG------FAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp EEECSSCTTCCHHHHHHHHTTTSCCCEEEEETT------EEEEECSSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEEEECC------EEEEEECCHHHHHHHHHH
Confidence 4568887 6678888899999877765 34 567888899999988864
No 124
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.97 E-value=70 Score=19.93 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=36.7
Q ss_pred CCCccccccc----hHHHHHHHHhcCCcEEEecC-------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 37 RPYPVIGNLL----HKSLAKLAKIHGPIMNLRLG-------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 37 ~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~-------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
...-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.++.++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g------~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG------FGFVTFENSADADRAREK 74 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCC------EEEEEESCHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcE------EEEEEECCHHHHHHHHHH
Confidence 3345678887 66788888999999877753 3 356778899999998864
No 125
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.85 E-value=68 Score=19.79 Aligned_cols=59 Identities=8% Similarity=0.033 Sum_probs=38.1
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCccc--c-CCceEEEEeCCHHHHHHHHHHcCccc
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL--S-FNLVTTVVVSSPSTAKAILKEHDSLF 96 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~--~-~~~~~~v~v~dp~~~~~i~~~~~~~~ 96 (266)
..-++|++. ...+.++..+||+|..+.+..-. . ....-.|-..+++.++.++..+...+
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~ 76 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDI 76 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEE
Confidence 344668877 66788888999999887763100 0 00034677889999999986443333
No 126
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.72 E-value=71 Score=20.25 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=35.9
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~ 90 (266)
..-++||+. ...+.++..+||.|..+.+. + .-.|-..+++.+..++.
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg------~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN------QAFLELATEEAAITMVN 69 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTT------EEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCC------EEEEEECCHHHHHHHHH
Confidence 345678887 56778888899998877653 3 46778889998888875
No 127
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=38.35 E-value=61 Score=19.09 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=31.8
Q ss_pred ccccc----hHHHHHHHHhcCCcEEEecCcc-cc-C-CceEEEEeCCHHHHHHHHHH
Q 048119 42 IGNLL----HKSLAKLAKIHGPIMNLRLGVR-LS-F-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 42 ~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~-~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
+|++. ...+.++..+||+|..+.+..- .. . ...-.|-..+++.++.++..
T Consensus 6 V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 6 VGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp EECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 45554 5667788889999887765310 00 0 00246778899999988864
No 128
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=38.14 E-value=64 Score=19.31 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=30.9
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~ 90 (266)
++|++. ...+.++..+||+|..+.+..-. . ....-.|-..+++.++.++.
T Consensus 10 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 66 (89)
T 3ucg_A 10 YVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66 (89)
T ss_dssp EEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh
Confidence 345554 56778888899998877653100 0 00024566788888888873
No 129
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=38.06 E-value=69 Score=19.65 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=34.0
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCccc---cCCceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRL---SFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~---~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
++|++. ...+.++..+||+|..+.+..-. .....-.|-..+++.+..++..
T Consensus 6 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 6 YLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 456665 56788888999999888763100 0000356778899999988854
No 130
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.05 E-value=70 Score=19.70 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=35.7
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+..-. . ....-.|-..+++.++.++..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 34567776 66788888999999888763100 0 000356778899999998854
No 131
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.90 E-value=68 Score=19.49 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=36.3
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+... .-.|-..+++.+..++..
T Consensus 12 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 12 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-----EEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-----EEEEEECCHHHHHHHHHH
Confidence 34668887 6678888899999988876431 456678899999988864
No 132
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.50 E-value=72 Score=19.66 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=34.2
Q ss_pred ccccccc----hHHHH----HHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLA----KLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~----~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+. ++..+||+|..+.+..-..-...-.|-..+++.++..+..
T Consensus 12 l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 12 VQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH
Confidence 4668887 44455 8888999998887641000000356778899999988863
No 133
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.44 E-value=55 Score=20.98 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=32.8
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCccc---cCCceEEEEeCCHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRL---SFNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~---~~~~~~~v~v~dp~~~~~i~~ 90 (266)
++|++. ...+.++..+||.|..+.+..-- .....-.|-..+++.++.++.
T Consensus 29 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (114)
T 2cq4_A 29 FCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHH
Confidence 568877 66788888999999887763100 000024567788888888873
No 134
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=37.38 E-value=78 Score=20.16 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=36.9
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCccc---cCCceEEEEeCCHHHHHHHHHHc
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL---SFNLVTTVVVSSPSTAKAILKEH 92 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~---~~~~~~~v~v~dp~~~~~i~~~~ 92 (266)
.--++|++. ...+.++..+||+|..+.+..-. .-...-.|-..+++.++.++...
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 344678887 66788888999999887753100 00002467788999999998654
No 135
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.67 E-value=74 Score=19.55 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=34.9
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCcccc------CCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS------FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~------~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+..-.. ....-.|-..+++.++.++..
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 34667777 667888889999987776531000 000245667899999999874
No 136
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=35.90 E-value=70 Score=19.05 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=33.5
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCcccc----CCceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS----FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~----~~~~~~v~v~dp~~~~~i~~~ 91 (266)
++|++. ...+.++..+||+|..+.+..-.. ....-.|-..+++.++.++..
T Consensus 8 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 8 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 456666 667788889999998777521000 000346778899999998864
No 137
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=35.86 E-value=75 Score=19.42 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=35.1
Q ss_pred Cccccccc----hHHHH----HHHHhcCCcEEEecC------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLA----KLAKIHGPIMNLRLG------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~----~~~~~yG~i~~~~~~------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+. ++..+||+|..+.+. + .-.|-..+++.+...+..
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g------~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRG------QAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTT------CEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCc------EEEEEeCCHHHHHHHHHH
Confidence 34668877 44444 888999999888764 4 467888999999988864
No 138
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.75 E-value=83 Score=19.85 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=37.8
Q ss_pred CCCCccccccc----hHHHHHHHHhcCCcEEEecCccc---cCCceEEEEeCCHHHHHHHHHH
Q 048119 36 LRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL---SFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 36 p~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~---~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
|...-++|++. ...+.++..+||+|..+.+..-. .....-.|-..+++.+..++..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 34455778887 66788888999999888764100 0000245777899999998864
No 139
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.63 E-value=77 Score=19.49 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=36.1
Q ss_pred CCCCccccccc----hHHHHHHHHhcCCcE-EEecCccc-c-CC-ceEEEEeCCHHHHHHHHHH
Q 048119 36 LRPYPVIGNLL----HKSLAKLAKIHGPIM-NLRLGVRL-S-FN-LVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 36 p~~~p~~G~~~----~~~~~~~~~~yG~i~-~~~~~~~~-~-~~-~~~~v~v~dp~~~~~i~~~ 91 (266)
|...-++|++. ...+.++..+||+|. .+.+..-. . .. .--.|-..+++.++.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 33445678887 667888889999988 76653100 0 00 0235667899999998863
No 140
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=35.53 E-value=61 Score=23.45 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=35.3
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecC--------ccccCCceEEEEeCCHHHHHHHHHHcC
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLG--------VRLSFNLVTTVVVSSPSTAKAILKEHD 93 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~--------~~~~~~~~~~v~v~dp~~~~~i~~~~~ 93 (266)
++|++. ...+.++..+||+|..+++. | .-.|-..+++.++.++...+
T Consensus 113 ~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG------~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 113 YIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG------SIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp EEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEE------EEEEEESSHHHHHHHHHCTT
T ss_pred EecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCccc------EEEEEECCHHHHHHHHHhCC
Confidence 567777 66788888999998777643 3 35677789999999986443
No 141
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.73 E-value=51 Score=21.22 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=34.5
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCcccc---CCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS---FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~---~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+..--. ....-.|-..+++.++.++..
T Consensus 30 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 30 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp EEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 3568877 667888889999987766521000 000245677899999999865
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=34.46 E-value=75 Score=23.14 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=37.4
Q ss_pred CCCCccccccc----hHHHHHHHHhcCCcEEEecC-----ccccCCceEEEEeCCHHHHHHHHHHc
Q 048119 36 LRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLG-----VRLSFNLVTTVVVSSPSTAKAILKEH 92 (266)
Q Consensus 36 p~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~-----~~~~~~~~~~v~v~dp~~~~~i~~~~ 92 (266)
|..--++|++. .+.+.++..+||+|..+.+. +. -...-.|-..+++.+..++...
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~--~~G~afV~F~~~~~A~~Ai~~~ 77 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR--SLGYAYVNFQQPADAERALDTM 77 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCC--ccccccceeCCHHHHHHHHHHh
Confidence 44445779988 66788888999999877652 10 0002467788999999988653
No 143
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.44 E-value=84 Score=19.57 Aligned_cols=53 Identities=21% Similarity=0.118 Sum_probs=36.5
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+..-. . ....-.|-..+++.++.++..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 17 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 34668887 66788888999999888763200 0 000246778899999999874
No 144
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.31 E-value=34 Score=22.02 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=36.6
Q ss_pred CCccccccc----hHHHH---HHHHhcCCcEEEecCccc----cCC--ceEEEEeCCHHHHHHHHHH-cCccc
Q 048119 38 PYPVIGNLL----HKSLA---KLAKIHGPIMNLRLGVRL----SFN--LVTTVVVSSPSTAKAILKE-HDSLF 96 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~---~~~~~yG~i~~~~~~~~~----~~~--~~~~v~v~dp~~~~~i~~~-~~~~~ 96 (266)
..-++|++. .+.+. ++..+||+|..+.+..-. +.. ..-.|-..+++.++..+.. +...+
T Consensus 16 ~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 16 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp SCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 345678887 55566 777889998877653100 000 0345667899999988875 44333
No 145
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=34.01 E-value=80 Score=20.41 Aligned_cols=53 Identities=26% Similarity=0.274 Sum_probs=35.2
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCcccc--CCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+..-.. ....-.|-..+++.++.++..
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 34567776 667888889999987776531000 000346778899999998864
No 146
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.75 E-value=51 Score=19.11 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=29.4
Q ss_pred ccccc----hHHHHHHHHhcCCcEEEecCccc-c-C-CceEEEEeCCHHHHHHHHHHc
Q 048119 42 IGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S-F-NLVTTVVVSSPSTAKAILKEH 92 (266)
Q Consensus 42 ~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~-~-~~~~~v~v~dp~~~~~i~~~~ 92 (266)
+|+++ ...+.++..+||+|..+.+..-. + . ...-.|-..+++.++.++...
T Consensus 5 v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 5 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp EESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 45554 56678888889987666542100 0 0 002345556888888877543
No 147
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.70 E-value=79 Score=19.64 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=33.3
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+..-- . ....-.|-..+++.++.++..
T Consensus 11 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3556666 56788888899998776653100 0 000245667899999999864
No 148
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.66 E-value=94 Score=19.86 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=36.8
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCcccc---CCceEEEEeCCHHHHHHHHHHcC
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS---FNLVTTVVVSSPSTAKAILKEHD 93 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~---~~~~~~v~v~dp~~~~~i~~~~~ 93 (266)
.-++|++. .+.+.++..+||+|..+.+..--. ....-.|-..+++.++.++....
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 19 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp EEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 34668887 667888889999998877632000 00024677789999999986543
No 149
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=33.48 E-value=96 Score=19.91 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=31.1
Q ss_pred hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHH
Q 048119 47 HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~ 90 (266)
..-+.++...||.+.--|+-.+ .-.+++.+|+.+++++.
T Consensus 29 t~DI~~lFs~fggv~I~WidDT-----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 6677888899997665566653 56788999999999997
No 150
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=33.37 E-value=99 Score=20.16 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=34.7
Q ss_pred CCCCCCCccccccc--------------hHHHHHHHHhcCCcEEEecC-----ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 33 PPGLRPYPVIGNLL--------------HKSLAKLAKIHGPIMNLRLG-----VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 33 ppgp~~~p~~G~~~--------------~~~~~~~~~~yG~i~~~~~~-----~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
||.|...-++.|+. .+-+.+...+||.|..+.+. | .-.|-..+++.+......
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G------~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG------NVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTC------CEEEECSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcE------EEEEEECCHHHHHHHHHH
Confidence 45555555555555 23445556789999888763 3 456777899888888754
No 151
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.74 E-value=90 Score=19.38 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=35.9
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCcccc---CCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS---FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~---~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+..-.. ....-.|-..+++.++.++..
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH
Confidence 34678887 667888889999998887631000 000346778889888888863
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=32.57 E-value=90 Score=21.99 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=36.4
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCcccc---CCceEEEEeCCHHHHHHHHHHcC
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS---FNLVTTVVVSSPSTAKAILKEHD 93 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~---~~~~~~v~v~dp~~~~~i~~~~~ 93 (266)
--++|++. ...+.++..+||+|..+.+..-.. -...-.|-..+++.+..++..+.
T Consensus 15 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 76 (196)
T 1l3k_A 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP 76 (196)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC
Confidence 34668887 667888889999987766421000 00024577889999999996543
No 153
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=32.30 E-value=1.2e+02 Score=20.97 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=34.0
Q ss_pred cccccc----hHHHHHHHHhcC--CcEEEecC-----ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHG--PIMNLRLG-----VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG--~i~~~~~~-----~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
++|++. ...+.++..+|| .|..+.+. +. + ..--.|-..+++.+..++..
T Consensus 59 fVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~-s-kGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 59 YVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQ-S-KGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCC-E-EEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCc-c-ceEEEEEECCHHHHHHHHHH
Confidence 567776 667888889999 88777652 10 0 00246778899999999875
No 154
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.22 E-value=92 Score=19.33 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=35.4
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCcccc-CCceEEEEeCCHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS-FNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~-~~~~~~v~v~dp~~~~~i~~ 90 (266)
..-++|++. ...+.++..+||+|..+.+..-.. -...-.|-..+++.+..++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 16 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 345678887 667888889999988776521000 00034677889999988886
No 155
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.87 E-value=1.1e+02 Score=20.17 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=35.0
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCcc-cc--CCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVR-LS--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+..- .. ....-.|-..+++.++.++..
T Consensus 66 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 66 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 3567776 6678888899999988876310 00 000346778899999988854
No 156
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=31.73 E-value=1e+02 Score=19.65 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=37.9
Q ss_pred CCCCccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 36 LRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 36 p~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
|...-++||+. ...+.++..+||+|..+.+. + .-.|-..+++.++.....
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg------~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKR------QALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTT------EEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCC------EEEEEECCHHHHHHHHHH
Confidence 44456778888 66788888999998877652 4 567888899988888753
No 157
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.70 E-value=97 Score=19.42 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEE-EecC--------ccccCCceEEEEeCCHHHHHHHHHHcC
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMN-LRLG--------VRLSFNLVTTVVVSSPSTAKAILKEHD 93 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~-~~~~--------~~~~~~~~~~v~v~dp~~~~~i~~~~~ 93 (266)
..-++|++. ...+.++..+||.|.. +.+. + .-.|-..+++.++..+..+.
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G------~afV~F~~~~~a~~A~~~~~ 78 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTG------EAFVQFASQEIAEKALKKHK 78 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCS------EEEEEESSHHHHHHHHTTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcce------EEEEEECCHHHHHHHHHhCc
Confidence 334668887 6677888889998764 5442 3 35678899999999997643
No 158
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.66 E-value=1e+02 Score=19.61 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=36.7
Q ss_pred CCCccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHH
Q 048119 37 RPYPVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 37 ~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~ 90 (266)
...-++||+. ...+.++..+||.|..+.+. + .-.|-..+.+.+...+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg------~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDSAKECVT 69 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTT------EEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCC------EEEEEECCHHHHHHHHH
Confidence 3445678888 66788889999999887753 3 45677889998888885
No 159
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=30.86 E-value=98 Score=19.24 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=35.8
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCccccC--CceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSF--NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~--~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. ...+.++..+||+|..+.+..-..- ...-.|-..+++.+..++..
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 345678887 6678888899999887765310000 00345677899999988863
No 160
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.69 E-value=97 Score=19.13 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=36.3
Q ss_pred CCCCccccccc----hHHHHHHHHhcCCcEEEecCcc-cc--CCceEEEEeCCHHHHHHHHHH
Q 048119 36 LRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVR-LS--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 36 p~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
+...-++|++. ...+.++..+||+|..+.+..- .. ....-.|-..+++.+..++..
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 33445678887 6678888899999887776210 00 000245667789999888854
No 161
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.42 E-value=97 Score=19.06 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=35.1
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.+..++..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg------~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTT------EEEEECSSSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCC------EEEEEECCHHHHHHHHHH
Confidence 34678887 66788888999998777653 3 456677889988888754
No 162
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.19 E-value=88 Score=18.47 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=36.4
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.+..++..
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg------~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQ------CAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGT------EEEEEESSHHHHHHHHHT
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCC------EEEEEECCHHHHHHHHHH
Confidence 345668887 66788888999998877753 3 456778899999999863
No 163
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=30.06 E-value=1.1e+02 Score=19.91 Aligned_cols=47 Identities=15% Similarity=0.049 Sum_probs=34.8
Q ss_pred Cccccccc--hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL--HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~--~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.+..++..
T Consensus 41 ~lfVgnl~~te~~L~~~F~~~G~I~~v~i~~~kg------~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 41 TLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRN------CAFVTYEKMESADQAVAE 92 (121)
T ss_dssp EEEEECSSCCHHHHHHHHSTTCCCSCEEEETTTT------EEEEECSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHccCCEEEEEEeCCCC------EEEEEECCHHHHHHHHHH
Confidence 34567755 67788888999998777654 3 456777899999888854
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=29.83 E-value=1.5e+02 Score=21.13 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=34.9
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
++|++. ...+.++..+||+|..+.+..-. . -...-.|-..+++.++.++..
T Consensus 32 ~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 32 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 557776 66788888999999887762100 0 000356788899999999863
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=28.59 E-value=1.1e+02 Score=20.71 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=32.6
Q ss_pred ccccc----hHHHHHHHHhcCCcEEEecC--------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 42 IGNLL----HKSLAKLAKIHGPIMNLRLG--------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 42 ~G~~~----~~~~~~~~~~yG~i~~~~~~--------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
+|++. ...+.++..+||+|..+.+. + .-.|-..+++.+..++..
T Consensus 5 V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g------~afV~f~~~~~a~~A~~~ 60 (166)
T 3md3_A 5 VGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVN------YAFVEYHQSHDANIALQT 60 (166)
T ss_dssp EEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEE------EEEEEESSHHHHHHHHHH
T ss_pred ECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCC------EEEEEeCCHHHHHHHHHH
Confidence 45555 56778888999999887762 2 356778899999998843
No 166
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=28.42 E-value=1.2e+02 Score=19.33 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=35.1
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCccc-c-CC-ceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S-FN-LVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~-~~-~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. .+.+.++..+||+|..+.+..-. . .. ..-.|-..+++.++.++..
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 345678887 66788888999998776653100 0 00 0135667899999988854
No 167
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.88 E-value=1e+02 Score=19.53 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=33.8
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecC-------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLG-------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~-------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. .+.+.++..+||+|..+.+. + .-.|-..+++.++.++..
T Consensus 32 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg------~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 32 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG------FGFVTFENSADADRAREK 88 (109)
T ss_dssp EEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTT------EEEEECCCSHHHHHHHHH
T ss_pred EEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCce------EEEEEECCHHHHHHHHHH
Confidence 4568877 66788888999998776653 3 346677888888888763
No 168
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.75 E-value=1.2e+02 Score=19.06 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=34.9
Q ss_pred ccccccc----hHHHHHHHHhcCC-cEEEecCccc----cCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGP-IMNLRLGVRL----SFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~-i~~~~~~~~~----~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. .+.+.++..+||+ |..+.+...- .-...-.|-..+++.+..++..
T Consensus 11 l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 11 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 4567777 6678888899998 8887764000 0000356777899999999864
No 169
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.60 E-value=49 Score=20.71 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=34.5
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCcc-cc-C-CceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVR-LS-F-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~-~~-~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+..- .. . ...-.|-..+++.+..++..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 17 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 34668887 5667777888999887765320 00 0 00135677899999998864
No 170
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.50 E-value=58 Score=19.60 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=32.4
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecC----ccccCCceEEEEeCCHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLG----VRLSFNLVTTVVVSSPSTAKAIL 89 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~----~~~~~~~~~~v~v~dp~~~~~i~ 89 (266)
-++|++. ...+.++..+||+|..+.+. + --.|-..+++.++.+.
T Consensus 8 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g------~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRA------FAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCS------CCEEECSCHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCC------EEEEEECCHHHHHHHh
Confidence 3567776 66778888899999888764 3 3567788999887643
No 171
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=26.90 E-value=1.7e+02 Score=20.71 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=33.7
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecC--------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLG--------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~--------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
++|++. ...+.++..+||+|..+.+. + .-.|...+++.+..++..
T Consensus 92 ~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG------~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 92 LVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLG------TADVHFERRADALKAMKQ 148 (177)
T ss_dssp EEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSC------CEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEee------EEEEEeCCHHHHHHHHHH
Confidence 456666 66788888899998877752 2 356778899999988864
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=26.73 E-value=1.1e+02 Score=20.74 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=33.5
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~ 90 (266)
-++|++. ...+.++..+||+|..+.+..-. . -...-.|-..+++.+..++.
T Consensus 90 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 90 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp EEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 3456666 66788888899998877753200 0 00024577789999999886
No 173
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.70 E-value=1.2e+02 Score=19.02 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=36.0
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.+..++..
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g------~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTT------EEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCC------EEEEEECCHHHHHHHHHH
Confidence 34668887 66788888899999887753 4 467788899999988854
No 174
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.00 E-value=1.2e+02 Score=18.80 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=37.0
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCcc---cc-CCceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVR---LS-FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~---~~-~~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. ...+.++..+||+|..+.+..- .. ....-.|-..+++.+..++..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH
Confidence 345678887 6678888899999988876430 00 000246777899999998865
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.98 E-value=1.5e+02 Score=19.73 Aligned_cols=47 Identities=21% Similarity=0.101 Sum_probs=33.4
Q ss_pred ccccc----hHHHHHHHHhcCCcEEEecCccccCCc-eEEEEeCCHHHHHHHHHH
Q 048119 42 IGNLL----HKSLAKLAKIHGPIMNLRLGVRLSFNL-VTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 42 ~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~~~-~~~v~v~dp~~~~~i~~~ 91 (266)
+||+. .+.+.++..+||.|..+.+..- .. .-.|-..|++.+......
T Consensus 30 V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~ 81 (124)
T 2e5i_A 30 IQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAA 81 (124)
T ss_dssp EESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHH
T ss_pred EcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHH
Confidence 58887 6788899999999877765310 00 256788898888777753
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=25.72 E-value=1e+02 Score=21.65 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=35.2
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccc-c-C-CceEEEEeCCHHHHHHHHHHcC
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S-F-NLVTTVVVSSPSTAKAILKEHD 93 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~-~-~~~~~v~v~dp~~~~~i~~~~~ 93 (266)
-+++++. ...+.++..+||+|..+.+..-. . . ...-.|-..+++.+..++..+.
T Consensus 107 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~ 167 (196)
T 1l3k_A 107 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 167 (196)
T ss_dssp EEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSC
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCC
Confidence 3567776 66788888899998777653100 0 0 0014677889999999986543
No 177
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.63 E-value=1.2e+02 Score=18.54 Aligned_cols=48 Identities=15% Similarity=0.042 Sum_probs=36.1
Q ss_pred CCccccccc--hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL--HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~--~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. ...+.++..+||+|..+.++ + .-.|-..+++.+...+..
T Consensus 16 ~~l~V~n~~~t~~~l~~~F~~~G~i~~v~i~~~~g------~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 16 NTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRN------CAFVTYEKMESADQAVAE 68 (97)
T ss_dssp SEEEEECSSCCHHHHHHHHTTTSCEEEEEEETTTT------EEEEEESSHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHhhCCCEEEEEecCCCC------EEEEEECCHHHHHHHHHH
Confidence 334567755 67788889999999888764 3 456778899999998864
No 178
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=25.45 E-value=1.5e+02 Score=19.69 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=35.7
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+..-. . ....-.|-..+++.++.++..
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34668887 66788888999999888763200 0 000136778899999998853
No 179
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=25.18 E-value=1.5e+02 Score=19.90 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=33.2
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCccc-c-CC-ceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S-FN-LVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~-~~-~~~~v~v~dp~~~~~i~~~ 91 (266)
++|++. .+.+.++..+||+|..+.+..-. + .. ..-.|-..+++.++..+..
T Consensus 6 ~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 6 IVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 345555 56778888999998877652100 0 00 0246778899999999864
No 180
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=25.11 E-value=1.3e+02 Score=18.80 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=34.9
Q ss_pred Cccccccc--h--------HHHHHHHHhcCCcEEEecC-------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL--H--------KSLAKLAKIHGPIMNLRLG-------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~--~--------~~~~~~~~~yG~i~~~~~~-------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. . ..+.++..+||+|..+.+. | .-.|-..+++.+..++..
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G------~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKG------YIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCC------EEEEEECSSSHHHHHHHH
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeee------EEEEEECCHHHHHHHHHH
Confidence 34668887 2 4577888899999888764 3 456777888888888864
No 181
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=25.07 E-value=1.3e+02 Score=18.94 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=29.2
Q ss_pred ChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhh-CCccccHHHHHHHHHHHHHHHH
Q 048119 112 STLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCR-AGKAIDFGQAAFNTSINLLPNT 177 (266)
Q Consensus 112 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~d~~~~~~~~~~~vi~~~ 177 (266)
...-...-+.++.++|+.-. .+.+.|.=-++++.+.++-+ .|..-|+....+-...||++..
T Consensus 30 ~~~n~~Id~fVn~aFfadi~----v~~ivEIHMeLmDeFskQLkLEGrsee~LlDYRLtLiDv~AHL 92 (102)
T 1r5q_A 30 KALKEKIDKFINAVFCANIP----VPEIIEIHMELIDEFSKQLRLEGRGDETLMDYRLTLIDILAHL 92 (102)
T ss_dssp --CHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHHTTC---CC--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence 45555666777766565433 33334444444444443322 3444555556666667777654
No 182
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.05 E-value=1.4e+02 Score=18.98 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=37.4
Q ss_pred CCCCCCccccccc-----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHH
Q 048119 34 PGLRPYPVIGNLL-----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 34 pgp~~~p~~G~~~-----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~ 90 (266)
+.|..--++||+. ...+.++..+||.|..+++... . ..-.|-..+++.+..+..
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--k-g~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--I-NEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--S-SCEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--C-CEEEEEECCHHHHHHHHH
Confidence 3444445678887 3567777889999988886420 0 035788889999988875
No 183
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=24.60 E-value=1.1e+02 Score=18.41 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=29.9
Q ss_pred cccccc----hHHHHHHHHhcC--CcEEEecCcc-ccCCc--eEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHG--PIMNLRLGVR-LSFNL--VTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG--~i~~~~~~~~-~~~~~--~~~v~v~dp~~~~~i~~~ 91 (266)
++|++. .+.+.++..+|| ++..+.+..- ..-.. --.|-..+++.++..+..
T Consensus 5 ~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 5 YIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHH
Confidence 456665 567788889999 7766653210 00000 135567789988888853
No 184
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.48 E-value=1.3e+02 Score=18.46 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=36.3
Q ss_pred Cccccccc----hHHHHHHHHhc--CCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIH--GPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~y--G~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+| |.|..+.+... .-.|-..+++.+..++..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g-----~afV~f~~~~~A~~A~~~ 70 (99)
T 2cpd_A 17 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-----YAFVHFSNREDAVEAMKA 70 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS-----EEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC-----eEEEEeCCHHHHHHHHHH
Confidence 45678887 66788888999 88888775321 466778899999998863
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=24.46 E-value=1.6e+02 Score=20.08 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=34.5
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccccC--CceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSF--NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~--~~~~~v~v~dp~~~~~i~~~ 91 (266)
-+++++. ...+.+...+||+|..+.+..-..- ...-.|-..+++.+..++..
T Consensus 98 l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 98 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 4567776 6678888899999887765320000 00146778899999988854
No 186
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=24.38 E-value=54 Score=20.45 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=32.5
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecC--------ccccCCceEEEEeCCHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLG--------VRLSFNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~--------~~~~~~~~~~v~v~dp~~~~~i~~ 90 (266)
-++|++. ...+.++..+||+|..+.+. + .-.|-..+++.++.++.
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g------~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG------YGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEE------EEEEEESSCCCHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccc------eEEEEECCHHHHHHHHh
Confidence 3567776 66788888999998877652 2 24566778888888876
No 187
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=24.25 E-value=1.4e+02 Score=18.88 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=35.8
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCccc-c-C-CceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S-F-NLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~-~-~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. ...+.++..+||+|..+.+..-. . . ...-.|-..+++.++.++..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 345668887 66788888999998877653100 0 0 00235677899999999864
No 188
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=24.11 E-value=1.3e+02 Score=18.47 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=34.1
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecC---ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLG---VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~---~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||.|..+.+. + .-.|-..+++.+..++..
T Consensus 30 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g------~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 30 AYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKG------CCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTT------EEEEECSSHHHHHHHHHH
T ss_pred EEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCC------EEEEEECCHHHHHHHHHH
Confidence 4568877 66788888999998777753 3 456677888888888754
No 189
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=24.04 E-value=1.3e+02 Score=18.55 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=32.5
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCccc--c--CCceEEEEeCCHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRL--S--FNLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~--~--~~~~~~v~v~dp~~~~~i~~ 90 (266)
++|++. ...+.++..+|| |..+.+..-. + ...--.|-..+++.++.++.
T Consensus 23 ~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 79 (100)
T 2j76_E 23 FLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 79 (100)
T ss_dssp EESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHh
Confidence 568877 557778888899 8888763200 0 00034677889999998883
No 190
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=23.80 E-value=1.7e+02 Score=19.76 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=36.6
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. ...+.++..+||+|..+.+..-. . ...--.|-..+++.+..++..
T Consensus 71 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 71 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 345678887 66788888999999888764200 0 000246778899999999864
No 191
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=23.72 E-value=1.4e+02 Score=18.52 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCcEEEecC---------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 47 HKSLAKLAKIHGPIMNLRLG---------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 47 ~~~~~~~~~~yG~i~~~~~~---------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
...+.++..+||+|..+.+. | --.|-..+++.++..+..
T Consensus 26 ~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG------~afV~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 26 KKALTSLFSKAGKVVNMEFPIDEATGKTKG------FLFVECGSMNDAKKIIKS 73 (100)
T ss_dssp HHHHHHHHHTTSCEEEEECCEETTTTEECS------EEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEeEEEEEEcCCCCccce------EEEEEECCHHHHHHHHHH
Confidence 35677778889999888763 2 346778899999988853
No 192
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=23.66 E-value=1.6e+02 Score=24.55 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=36.3
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecC---------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLG---------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~---------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|||. ...+.++..+||+|..+.+. + .-.|...+++.+..++..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG------~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRG------YAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccc------eEEEeeccHHHHHHHHHH
Confidence 345778887 66788888899999887762 2 356778899999988854
No 193
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=23.44 E-value=1.6e+02 Score=19.36 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=34.5
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+..-- + ....-.|-..+++.+..++..
T Consensus 45 l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 45 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp EEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3568877 66788888999998877652100 0 000245677899999998864
No 194
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.21 E-value=1.2e+02 Score=18.42 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=33.2
Q ss_pred ccccccc----hHHHHHHHHhcCCcEEE-ecCcc-cc--CCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HKSLAKLAKIHGPIMNL-RLGVR-LS--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~~~~~~~~~yG~i~~~-~~~~~-~~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+ .+..- .. ....-.|-..+++.++.++..
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 8 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 4567776 66788888999987655 33210 00 000346778899999999863
No 195
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.21 E-value=1.6e+02 Score=19.20 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=37.7
Q ss_pred CCCCccc--cccc----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 36 LRPYPVI--GNLL----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 36 p~~~p~~--G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
|...-++ |++. .+.+.+...+||.|..+.+... ..--.|-..+++.+++.+..
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHH
Confidence 4444677 7786 6688889999999988876320 00356778899999888864
No 196
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.58 E-value=1.5e+02 Score=18.56 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=35.5
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. .+.+.++..+||+|..+.+...-.-...-.|-..+++.++.++..
T Consensus 24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~ 80 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG 80 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHH
Confidence 34668887 667888899999997776532000000246778899999988853
No 197
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.57 E-value=1.4e+02 Score=18.38 Aligned_cols=58 Identities=21% Similarity=0.136 Sum_probs=35.6
Q ss_pred CCCCCCCCccccccc----hHHHHHHHHhcCCcEEEecCcccc--C-CceEEEEeCCHHHHHHHHH
Q 048119 32 LPPGLRPYPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS--F-NLVTTVVVSSPSTAKAILK 90 (266)
Q Consensus 32 ~ppgp~~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~--~-~~~~~v~v~dp~~~~~i~~ 90 (266)
.++.|...-++|++. ...+.++..+|| |..+.+..-.. . ...-.|-..+++.++.++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGG
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHh
Confidence 334444445678887 667778888887 77766531000 0 0023567789999998883
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=22.57 E-value=1.3e+02 Score=22.91 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=38.9
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEec-------CccccCCceEEEEeCCHHHHHHHHHHcCcccc
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRL-------GVRLSFNLVTTVVVSSPSTAKAILKEHDSLFC 97 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~-------~~~~~~~~~~~v~v~dp~~~~~i~~~~~~~~~ 97 (266)
..-++|++. ...+.++..+||+|..+.+ .+ .-.|-..+++.+..++..+...+.
T Consensus 42 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g------~afV~f~~~~~A~~A~~~~~~~~~ 106 (292)
T 2ghp_A 42 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR------FARIEFARYDGALAAITKTHKVVG 106 (292)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSE------EEEEEESSHHHHHHHHTTTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcE------EEEEEECCHHHHHHHHHhCCcEeC
Confidence 345668887 6678888899999877764 23 457788999999999954333333
No 199
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=22.48 E-value=1.2e+02 Score=19.29 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=33.2
Q ss_pred cccccc----hHHHHHHHHhcCCcEEEecCccc-c--CCceEEEEeCCHHHHHHHHHH
Q 048119 41 VIGNLL----HKSLAKLAKIHGPIMNLRLGVRL-S--FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 41 ~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~-~--~~~~~~v~v~dp~~~~~i~~~ 91 (266)
++|++. .+.+.++..+||+|..+.+..-. . ....-.|-..+++.++..+..
T Consensus 44 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 567776 66778888899998877753100 0 000245667788888888864
No 200
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=22.10 E-value=1.5e+02 Score=18.37 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=35.6
Q ss_pred Cccccccc----hHHHHHHHHhcCCcEEEecCcccc---CCceEEEEeCCHHHHHHHHHH
Q 048119 39 YPVIGNLL----HKSLAKLAKIHGPIMNLRLGVRLS---FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 39 ~p~~G~~~----~~~~~~~~~~yG~i~~~~~~~~~~---~~~~~~v~v~dp~~~~~i~~~ 91 (266)
.-++|++. ...+.++..+||+|..+.+..-.. -...-.|-..+++.+..++..
T Consensus 15 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 15 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34668887 667888889999998887632000 000346677899999888863
No 201
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=21.69 E-value=1.9e+02 Score=19.42 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=36.8
Q ss_pred CCccccccc----hHHHHHHHHhcCCcEEEecC----ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 38 PYPVIGNLL----HKSLAKLAKIHGPIMNLRLG----VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 38 ~~p~~G~~~----~~~~~~~~~~yG~i~~~~~~----~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
..-++|++. ...+.++..+||+|..+.+. + --.|-..+++.+...+..
T Consensus 74 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g------~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 74 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPG------FAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp CEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCS------EEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCc------EEEEEECCHHHHHHHHHH
Confidence 345678887 66788888999999888763 3 456778899999988863
No 202
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=21.66 E-value=1.5e+02 Score=18.22 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=35.1
Q ss_pred ccccccc-----hHHHHHHHHhcCCcEEEecCccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL-----HKSLAKLAKIHGPIMNLRLGVRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~-----~~~~~~~~~~yG~i~~~~~~~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. ...+.++..+||+|..+.+... .-.|-..+++.++.++..
T Consensus 25 l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g-----~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 25 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNA-----FGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSS-----EEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCC-----EEEEEECCHHHHHHHHHH
Confidence 3567765 5577888899999988876421 566778899999998864
No 203
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=21.04 E-value=1.2e+02 Score=18.19 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=29.0
Q ss_pred ccccc----hHHHHHHHHhcCCcEEEecCccc--c-CCceEEEEeCCHHHHHHHHHH
Q 048119 42 IGNLL----HKSLAKLAKIHGPIMNLRLGVRL--S-FNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 42 ~G~~~----~~~~~~~~~~yG~i~~~~~~~~~--~-~~~~~~v~v~dp~~~~~i~~~ 91 (266)
+|++. ...+.++..+||+|..+.+..-. . ...--.|-..+++ +...+..
T Consensus 6 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 6 VGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp EEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT
T ss_pred ECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 45555 45667777889998777653100 0 0002456678888 7777753
No 204
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=20.45 E-value=1.8e+02 Score=18.71 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhh-CCccccHHHHHHHHHHHHHHHHH
Q 048119 112 STLWRSYRKMCNMHIFNRQKLDASQDLRHKKIKDLLTYVEENCR-AGKAIDFGQAAFNTSINLLPNTI 178 (266)
Q Consensus 112 g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~d~~~~~~~~~~~vi~~~~ 178 (266)
...-...-+.++.++|+.-. .+.+.|.=-++++.+.++-+ .|..-|+....+-...||++..+
T Consensus 37 ~~~nq~Id~FVn~aFfadi~----v~~ivEIHMeLmDeFskQLkLEGrsee~LlDYRLtLiDv~AHLc 100 (111)
T 1v2z_A 37 AKVNERIDEFVSKAFFADIS----VSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLC 100 (111)
T ss_dssp SCHHHHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHTTCCGGGGGGGTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 44555566677766554322 33344444444444444322 35556666677777778776553
No 205
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.32 E-value=1.8e+02 Score=18.51 Aligned_cols=53 Identities=9% Similarity=-0.014 Sum_probs=36.6
Q ss_pred CCCCCCccccccc----hHHHHHHHHhcCCc---EEEec------CccccCCceEEEEeCCHHHHHHHHHHc
Q 048119 34 PGLRPYPVIGNLL----HKSLAKLAKIHGPI---MNLRL------GVRLSFNLVTTVVVSSPSTAKAILKEH 92 (266)
Q Consensus 34 pgp~~~p~~G~~~----~~~~~~~~~~yG~i---~~~~~------~~~~~~~~~~~v~v~dp~~~~~i~~~~ 92 (266)
|.+...-++|++. ...+.++..+||.+ +.+-. -+ .-.|-..+++.++.++..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G------~afV~F~~~~~a~~Al~~~ 77 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLG------QALVQFKNEDDARKSERLH 77 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSS------CEEEECSSHHHHHHHGGGC
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcce------EEEEEECCHHHHHHHHHhC
Confidence 3344445678887 66778888889988 44421 23 3577889999999998653
No 206
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=20.03 E-value=2e+02 Score=19.02 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=33.3
Q ss_pred ccccccc----hH----HHHHHHHhcCCcEEEecC------ccccCCceEEEEeCCHHHHHHHHHH
Q 048119 40 PVIGNLL----HK----SLAKLAKIHGPIMNLRLG------VRLSFNLVTTVVVSSPSTAKAILKE 91 (266)
Q Consensus 40 p~~G~~~----~~----~~~~~~~~yG~i~~~~~~------~~~~~~~~~~v~v~dp~~~~~i~~~ 91 (266)
-++|++. .. .+.++..+||+|..+.+. | .-.|-..+++.+...+..
T Consensus 32 LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG------~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSG------KAYIVFATQESAQAFVEA 91 (127)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCC------CEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCC------EEEEEECCHHHHHHHHHH
Confidence 4668887 22 345678899999887752 3 457888899999888864
Done!