Query 048121
Match_columns 227
No_of_seqs 232 out of 1098
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r4p_B Sltii B subunit, shiga- 30.5 7 0.00024 26.7 -0.9 13 192-204 24-36 (70)
2 3dvk_B Voltage-dependent R-typ 26.9 16 0.00053 20.2 0.3 8 193-201 12-19 (23)
3 1c4q_A Protein (shiga-like tox 25.1 10 0.00034 25.8 -0.9 13 192-204 25-37 (69)
4 2kep_A General secretion pathw 22.4 28 0.00095 26.0 1.0 25 177-201 49-74 (110)
5 3dve_B Voltage-dependent N-typ 20.3 27 0.00091 19.2 0.4 8 193-201 11-18 (23)
6 1t92_A General secretion pathw 15.0 54 0.0019 24.7 1.1 23 179-201 51-74 (116)
7 1sdi_A ORF-23, hypothetical pr 10.5 60 0.0021 27.2 0.2 10 198-207 186-195 (213)
8 3gn9_A Type II secretory pathw 10.5 73 0.0025 23.9 0.6 28 180-218 53-81 (115)
9 4hkr_A Calcium release-activat 10.4 2.8E+02 0.0094 23.2 4.1 43 8-50 127-169 (214)
10 3g20_A Type II secretion prote 8.9 95 0.0032 23.3 0.7 21 179-199 62-83 (123)
No 1
>1r4p_B Sltii B subunit, shiga-like toxin type II B subunit; AB5 toxin; HET: 1PS; 1.77A {Escherichia coli} SCOP: b.40.2.1 PDB: 2ga4_B* 3mxg_A* 2bos_A* 1qoh_A*
Probab=30.48 E-value=7 Score=26.66 Aligned_cols=13 Identities=38% Similarity=1.135 Sum_probs=10.5
Q ss_pred ChhhHhhccchhh
Q 048121 192 SLQDFWGKRWNLM 204 (227)
Q Consensus 192 Sl~dFWGrRWhis 204 (227)
+=+|+|-.|||+-
T Consensus 24 ~gkeywt~rwnlq 36 (70)
T 1r4p_B 24 DGKEYWTSRWNLQ 36 (70)
T ss_dssp TTEEEEECCTTHH
T ss_pred CCeeeeecccchh
Confidence 4479999999974
No 2
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=26.89 E-value=16 Score=20.15 Aligned_cols=8 Identities=25% Similarity=0.712 Sum_probs=5.9
Q ss_pred hhhHhhccc
Q 048121 193 LQDFWGKRW 201 (227)
Q Consensus 193 l~dFWGrRW 201 (227)
++||| |++
T Consensus 12 I~d~~-r~~ 19 (23)
T 3dvk_B 12 IMDYY-KQS 19 (26)
T ss_dssp HHHHH-HHH
T ss_pred HHHHH-HHH
Confidence 67888 765
No 3
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=25.11 E-value=10 Score=25.83 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=10.5
Q ss_pred ChhhHhhccchhh
Q 048121 192 SLQDFWGKRWNLM 204 (227)
Q Consensus 192 Sl~dFWGrRWhis 204 (227)
+=+|+|-.|||+-
T Consensus 25 ~gkeywt~rwnlq 37 (69)
T 1c4q_A 25 GDKELATNRANLQ 37 (69)
T ss_dssp TTEEEEECCTTHH
T ss_pred cCeeeeecccchh
Confidence 4479999999974
No 4
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=22.39 E-value=28 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCCcCcCCC-CccccCChhhHhhccc
Q 048121 177 GLELEPQFK-KPHLSTSLQDFWGKRW 201 (227)
Q Consensus 177 G~~l~~nF~-~Py~s~Sl~dFWGrRW 201 (227)
+-..|.||+ .||+..-..|=||+.|
T Consensus 49 ~~~~~~~w~~g~YL~~~P~DPWg~~Y 74 (110)
T 2kep_A 49 GNPQPKNWNKDGYLKKLPVDPWGNPY 74 (110)
T ss_dssp SCCCSSCCCSTTTCCSCCCCSTTCCC
T ss_pred CCcccccccCCCCccccCCCCCCCce
Confidence 445678999 8999999999999544
No 5
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=20.31 E-value=27 Score=19.21 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=5.6
Q ss_pred hhhHhhccc
Q 048121 193 LQDFWGKRW 201 (227)
Q Consensus 193 l~dFWGrRW 201 (227)
++||| |++
T Consensus 11 I~d~~-r~~ 18 (23)
T 3dve_B 11 IFDFY-KQN 18 (26)
T ss_dssp HHHHH-HHT
T ss_pred HHHHH-HHH
Confidence 57888 665
No 6
>1t92_A General secretion pathway protein G; domain-swapping, zinc, pseudopilin, protein transport; 1.60A {Klebsiella pneumoniae} SCOP: d.24.1.3
Probab=15.01 E-value=54 Score=24.71 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=18.6
Q ss_pred CcCcCCC-CccccCChhhHhhccc
Q 048121 179 ELEPQFK-KPHLSTSLQDFWGKRW 201 (227)
Q Consensus 179 ~l~~nF~-~Py~s~Sl~dFWGrRW 201 (227)
..|+|++ .||+..-..|=||+.|
T Consensus 51 ~~~~~w~~g~YL~~~P~DPWG~~Y 74 (116)
T 1t92_A 51 PHARNYPEGGYIRRLPQDPWGSDY 74 (116)
T ss_dssp SCCSSCCTTTTSSSCCBCTTSCBC
T ss_pred cccccccCCCCccccCCCCCCCce
Confidence 3578998 5999999999998543
No 7
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} SCOP: a.198.1.1 PDB: 1qz4_A
Probab=10.53 E-value=60 Score=27.18 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=8.3
Q ss_pred hccchhhhhh
Q 048121 198 GKRWNLMVTG 207 (227)
Q Consensus 198 GrRWhisls~ 207 (227)
|+|||+.+++
T Consensus 186 G~RwqllF~R 195 (213)
T 1sdi_A 186 GGRLQLMFSR 195 (213)
T ss_dssp CCHHHHHHHH
T ss_pred CchhhHHhhH
Confidence 7899998875
No 8
>3gn9_A Type II secretory pathway, pseudopilin EPSG; general secretory pathway, major pilin, protein transport, C methylation; 1.86A {Vibrio vulnificus} PDB: 3fu1_A
Probab=10.52 E-value=73 Score=23.94 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=21.9
Q ss_pred cCcCCC-CccccCChhhHhhccchhhhhhhhhhhhcccch
Q 048121 180 LEPQFK-KPHLSTSLQDFWGKRWNLMVTGILRPTVYKPSL 218 (227)
Q Consensus 180 l~~nF~-~Py~s~Sl~dFWGrRWhisls~~lRdyVY~Pl~ 218 (227)
.|.|++ .||+-+-..|=|| ++|+|..=+
T Consensus 53 ~p~~w~~g~YL~~lP~DPWG-----------~~Y~Y~~pg 81 (115)
T 3gn9_A 53 EPRNYRNGGYIKRLPKDPWG-----------NEYQYMSPG 81 (115)
T ss_dssp CCSSCCTTCSSSSCCBCTTS-----------CBCEEESSC
T ss_pred ccccccCCCcccCCCCCCCC-----------CCEEEeCCC
Confidence 467887 7999888899998 778886543
No 9
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=10.36 E-value=2.8e+02 Score=23.15 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhccccchhHHHhHHHHHHHHHhhhhhhh
Q 048121 8 WLSVTISLCYCHAIGKMVSKGIKRLSCLIPVVCLFLYLPLCLT 50 (227)
Q Consensus 8 ~~~~~~~~~y~~~i~~~~~~G~~Rl~~l~Pv~~l~~~lPl~~~ 50 (227)
-+..++.+||.++..-.-+.++.--.-+.|++++|..+-..|-
T Consensus 127 FL~evall~WVKF~~~~~~aa~~~t~vliPv~i~F~~Fa~hFY 169 (214)
T 4hkr_A 127 FLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAIHFY 169 (214)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhheEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999988888888888889999999998887774
No 10
>3g20_A Type II secretion protein; general secretory pathway, major pilin, protein transport; HET: NHE; 1.78A {Escherichia coli O157} SCOP: d.24.1.3
Probab=8.89 E-value=95 Score=23.34 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.0
Q ss_pred CcCcCCC-CccccCChhhHhhc
Q 048121 179 ELEPQFK-KPHLSTSLQDFWGK 199 (227)
Q Consensus 179 ~l~~nF~-~Py~s~Sl~dFWGr 199 (227)
+.|.|++ .||+.+-.+|=||+
T Consensus 62 ~~p~~w~~g~Yl~~~P~DPwg~ 83 (123)
T 3g20_A 62 PEPRNYRQDGYIRRLPQDPWGG 83 (123)
T ss_dssp SCCTTCCTTCSCSCCCBCTTSC
T ss_pred cccccccCCCcccCCCCCCCCC
Confidence 3467887 79998888999984
Done!