Query 048122
Match_columns 125
No_of_seqs 127 out of 666
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 68.2 9.6 0.00033 24.4 4.8 57 44-104 11-74 (109)
2 3drz_A BTB/POZ domain-containi 65.0 14 0.00047 24.8 5.2 62 41-103 5-71 (107)
3 2al3_A TUG long isoform; TUG U 41.2 19 0.00065 24.4 2.7 37 42-80 9-47 (90)
4 1w8x_N Protein P31, protein C, 39.5 8.2 0.00028 27.5 0.6 28 40-67 86-123 (126)
5 1r29_A B-cell lymphoma 6 prote 38.6 38 0.0013 22.2 4.0 51 50-104 37-92 (127)
6 2vpk_A Myoneurin; transcriptio 37.8 54 0.0018 21.1 4.5 49 50-104 30-83 (116)
7 1o51_A Hypothetical protein TM 37.4 27 0.00093 24.1 3.1 28 44-77 16-43 (114)
8 1und_A Advillin, P92; actin bi 35.7 9.6 0.00033 21.9 0.4 18 59-76 1-19 (37)
9 2xko_C PIPX, global nitrogen r 35.6 3.8 0.00013 28.1 -1.6 14 59-72 5-18 (89)
10 1vd2_A Protein kinase C, IOTA 31.9 32 0.0011 23.0 2.6 32 49-84 15-47 (89)
11 3drx_A BTB/POZ domain-containi 30.4 31 0.0011 26.4 2.6 62 41-103 11-77 (202)
12 3ga1_A Nucleus accumbens-assoc 30.2 91 0.0031 20.5 4.8 52 45-103 37-92 (129)
13 2ccq_A P97, peptide N-glycanas 30.1 43 0.0015 22.6 3.0 42 61-102 46-97 (99)
14 2lkt_A Retinoic acid receptor 29.9 24 0.00082 24.0 1.8 10 42-51 22-31 (125)
15 2dcl_A Hypothetical UPF0166 pr 28.3 57 0.002 22.9 3.6 31 42-78 10-40 (127)
16 2if5_A Zinc finger and BTB dom 25.6 1.2E+02 0.0041 19.4 4.7 52 50-104 33-88 (120)
17 1qwg_A PSL synthase;, (2R)-pho 25.1 71 0.0024 25.2 3.9 54 42-103 67-126 (251)
18 3n5b_B ASR0485 protein; PII, P 24.6 7.8 0.00027 27.5 -1.6 31 36-73 12-42 (112)
19 3ohu_A Transcription regulator 23.5 86 0.003 20.3 3.6 53 46-103 37-93 (125)
20 4i6k_A Amidohydrolase family p 23.0 1.4E+02 0.0047 22.4 5.1 39 60-102 133-171 (294)
21 1z3x_A Putative cytidyltransfe 21.4 5 0.00017 31.8 -3.5 29 37-66 208-236 (238)
22 1ffv_A CUTS, iron-sulfur prote 20.9 1.5E+02 0.0052 21.4 4.8 61 53-123 72-139 (163)
23 4ajy_C Transcription elongatio 20.7 1.3E+02 0.0044 19.3 4.0 53 49-101 9-63 (97)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=68.22 E-value=9.6 Score=24.41 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=41.2
Q ss_pred EEEEEecc---eeeEEeeccc--CcHHHHHHHHHHH-HcCCCCCCCeEec-CcHHHHHHHHHHHhcCC
Q 048122 44 FIVYTVDH---KRFVLPLVYL--NNNVVQALLELAE-EFGLPTNGPLTVL-CDTAFMEYVVTLISHNV 104 (125)
Q Consensus 44 ~~VyVGe~---~RfvVp~~yL--~hp~F~~LL~~ae-EfG~~~~G~L~iP-C~~~~Fe~vl~~i~~~~ 104 (125)
+.+.||++ ++|-+.-..| ..|.|+.++...- |-. +.|.|| .+.+.|+.++..+-.+.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~----~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK----SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C----CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC----CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 34556653 8999988888 6899999997654 432 678887 68999999999887653
No 2
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=64.95 E-value=14 Score=24.75 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=44.7
Q ss_pred cCeEEEEEecceeeEEeecccC-cH--HHHHHHHHHHHcC--CCCCCCeEecCcHHHHHHHHHHHhcC
Q 048122 41 KGHFIVYTVDHKRFVLPLVYLN-NN--VVQALLELAEEFG--LPTNGPLTVLCDTAFMEYVVTLISHN 103 (125)
Q Consensus 41 kG~~~VyVGe~~RfvVp~~yL~-hp--~F~~LL~~aeEfG--~~~~G~L~iPC~~~~Fe~vl~~i~~~ 103 (125)
...+.+-|| +++|.+..+-|. +| .|..|.....++. .+.+|.+-|-.|...|++||..++.+
T Consensus 5 ~~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g 71 (107)
T 3drz_A 5 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG 71 (107)
T ss_dssp CCEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHS
T ss_pred CCEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCC
Confidence 345667777 788999887664 34 5666654221332 34679999999999999999999865
No 3
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=41.18 E-value=19 Score=24.44 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=25.3
Q ss_pred CeEEEEE-ecceeeEEeecccCcHHHHHHHHHHH-HcCCCC
Q 048122 42 GHFIVYT-VDHKRFVLPLVYLNNNVVQALLELAE-EFGLPT 80 (125)
Q Consensus 42 G~~~VyV-Ge~~RfvVp~~yL~hp~F~~LL~~ae-EfG~~~ 80 (125)
|--++++ -+.+|+.|++. ..-.+.++|++|- .|||+.
T Consensus 9 ~m~v~Vl~~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp -CCEEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCG
T ss_pred ccEEEEEcCCCcEEEEEEC--CCCCHHHHHHHHHHHhCCCh
Confidence 4334444 46899999983 3446777888888 999974
No 4
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=39.53 E-value=8.2 Score=27.53 Aligned_cols=28 Identities=32% Similarity=0.616 Sum_probs=18.5
Q ss_pred ccCeEEEEEecceeeE----------EeecccCcHHHH
Q 048122 40 VKGHFIVYTVDHKRFV----------LPLVYLNNNVVQ 67 (125)
Q Consensus 40 pkG~~~VyVGe~~Rfv----------Vp~~yL~hp~F~ 67 (125)
.+||||+.|-.+..|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 4799999997665555 789999988754
No 5
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=38.64 E-value=38 Score=22.21 Aligned_cols=51 Identities=4% Similarity=0.053 Sum_probs=39.6
Q ss_pred cceeeEEeeccc--CcHHHHHHHHHHH-HcCCCCCCCeEe-c-CcHHHHHHHHHHHhcCC
Q 048122 50 DHKRFVLPLVYL--NNNVVQALLELAE-EFGLPTNGPLTV-L-CDTAFMEYVVTLISHNV 104 (125)
Q Consensus 50 e~~RfvVp~~yL--~hp~F~~LL~~ae-EfG~~~~G~L~i-P-C~~~~Fe~vl~~i~~~~ 104 (125)
++++|-+.-..| ..|.|++++...- | ....|.| + .+...|+.++..+-.+.
T Consensus 37 ~~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 37 SREQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred CCEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 356777777777 6899999997655 5 4678999 4 68899999999887553
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=37.77 E-value=54 Score=21.11 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=37.3
Q ss_pred cceeeEEeeccc--CcHHHHHHHHHHHHcCCCCCCCeEec---CcHHHHHHHHHHHhcCC
Q 048122 50 DHKRFVLPLVYL--NNNVVQALLELAEEFGLPTNGPLTVL---CDTAFMEYVVTLISHNV 104 (125)
Q Consensus 50 e~~RfvVp~~yL--~hp~F~~LL~~aeEfG~~~~G~L~iP---C~~~~Fe~vl~~i~~~~ 104 (125)
++++|-+.-..| ..|.|++++... .++.+.|+ .+...|+.++..+-.+.
T Consensus 30 ~~~~~~aHk~vLaa~S~yF~~~f~~~------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 30 GEFQFKAHRNVLASFSEYFGAIYRST------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHTTC------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred CCEEEeccHHHHhhcCHHHHHHHcCC------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 356777777776 579999988643 35678887 78999999999887653
No 7
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=37.40 E-value=27 Score=24.12 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=23.1
Q ss_pred EEEEEecceeeEEeecccCcHHHHHHHHHHHHcC
Q 048122 44 FIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFG 77 (125)
Q Consensus 44 ~~VyVGe~~RfvVp~~yL~hp~F~~LL~~aeEfG 77 (125)
+-+|+||..|+- +.|+...|++.+++.|
T Consensus 16 Lriy~~E~~~~~------g~pL~~~Iv~~~~~~G 43 (114)
T 1o51_A 16 LKIYLGEKDKHS------GKPLFEYLVKRAYELG 43 (114)
T ss_dssp EEEEEETTCEET------TEEHHHHHHHHHHHTT
T ss_pred EEEEECCccccC------CeEHHHHHHHHHHHCC
Confidence 678999988874 8899999999998533
No 8
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=35.72 E-value=9.6 Score=21.88 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=15.8
Q ss_pred cccCcHHHHHHHHHHH-Hc
Q 048122 59 VYLNNNVVQALLELAE-EF 76 (125)
Q Consensus 59 ~yL~hp~F~~LL~~ae-Ef 76 (125)
.||+.-.|++++.++. ||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999998 87
No 9
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=35.61 E-value=3.8 Score=28.11 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=10.4
Q ss_pred cccCcHHHHHHHHH
Q 048122 59 VYLNNNVVQALLEL 72 (125)
Q Consensus 59 ~yL~hp~F~~LL~~ 72 (125)
.|||||.|.-|-.-
T Consensus 5 ~YLNHPtFGlLy~V 18 (89)
T 2xko_C 5 NYLNHPTFGLLYQI 18 (89)
T ss_dssp CEEEETTTEEEEEE
T ss_pred ccccCCccchhhee
Confidence 58999998766543
No 10
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=31.93 E-value=32 Score=23.01 Aligned_cols=32 Identities=6% Similarity=-0.102 Sum_probs=24.0
Q ss_pred ecceeeEEeecccCcHHHHHHHHHHH-HcCCCCCCCe
Q 048122 49 VDHKRFVLPLVYLNNNVVQALLELAE-EFGLPTNGPL 84 (125)
Q Consensus 49 Ge~~RfvVp~~yL~hp~F~~LL~~ae-EfG~~~~G~L 84 (125)
||-.|+-||. ..-|++|.++-. -|++..+.++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f 47 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLF 47 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeE
Confidence 5678888887 458999999999 8887533333
No 11
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=30.42 E-value=31 Score=26.38 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=43.7
Q ss_pred cCeEEEEEecceeeEEeecccC-cH--HHHHHHHHHHHcC--CCCCCCeEecCcHHHHHHHHHHHhcC
Q 048122 41 KGHFIVYTVDHKRFVLPLVYLN-NN--VVQALLELAEEFG--LPTNGPLTVLCDTAFMEYVVTLISHN 103 (125)
Q Consensus 41 kG~~~VyVGe~~RfvVp~~yL~-hp--~F~~LL~~aeEfG--~~~~G~L~iPC~~~~Fe~vl~~i~~~ 103 (125)
...+.+-|| +.||.+...-|. +| .|..|.....++. .+.+|.+-|-.|...|++||..++.+
T Consensus 11 ~~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG 77 (202)
T 3drx_A 11 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG 77 (202)
T ss_dssp CCEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHS
T ss_pred CCEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCC
Confidence 456677787 789999887764 34 5566543211332 34679999999999999999999865
No 12
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=30.20 E-value=91 Score=20.47 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=38.5
Q ss_pred EEEEecceeeEEeecccC--cHHHHHHHHHHHHcCCCCCCCeEec--CcHHHHHHHHHHHhcC
Q 048122 45 IVYTVDHKRFVLPLVYLN--NNVVQALLELAEEFGLPTNGPLTVL--CDTAFMEYVVTLISHN 103 (125)
Q Consensus 45 ~VyVGe~~RfvVp~~yL~--hp~F~~LL~~aeEfG~~~~G~L~iP--C~~~~Fe~vl~~i~~~ 103 (125)
.+.| ++++|-+.-..|. .|.|++++... ....|.|| .+.+.|+.++..+-.+
T Consensus 37 ~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 37 SVVV-KGHAFKAHRAVLAASSSYFRDLFNNS------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEE-TTEEEEECHHHHHHHBHHHHHHHHHC------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred EEEE-CCEEEEehHHHHHHcCHHHHHHHcCC------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 3344 4567777666664 69999988764 45678896 8999999999988654
No 13
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=30.12 E-value=43 Score=22.56 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=29.4
Q ss_pred cCcHHHHHHHHHHH-------HcCCC-CCCCeEec--CcHHHHHHHHHHHhc
Q 048122 61 LNNNVVQALLELAE-------EFGLP-TNGPLTVL--CDTAFMEYVVTLISH 102 (125)
Q Consensus 61 L~hp~F~~LL~~ae-------EfG~~-~~G~L~iP--C~~~~Fe~vl~~i~~ 102 (125)
+++|.|++-+...+ ..||. .++.+.+| .+....+++..+|..
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~~ 97 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAI 97 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHHh
Confidence 78899988654322 46996 45679997 667777777776653
No 14
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=29.92 E-value=24 Score=23.99 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=8.6
Q ss_pred CeEEEEEecc
Q 048122 42 GHFIVYTVDH 51 (125)
Q Consensus 42 G~~~VyVGe~ 51 (125)
-|.+|||||+
T Consensus 22 ~H~gIYvGdg 31 (125)
T 2lkt_A 22 EHWALYIGDG 31 (125)
T ss_dssp CEEEEEEETT
T ss_pred cEEEEEeCCC
Confidence 3899999986
No 15
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=28.29 E-value=57 Score=22.91 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=25.7
Q ss_pred CeEEEEEecceeeEEeecccCcHHHHHHHHHHHHcCC
Q 048122 42 GHFIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFGL 78 (125)
Q Consensus 42 G~~~VyVGe~~RfvVp~~yL~hp~F~~LL~~aeEfG~ 78 (125)
..+-+|+|+..|+ =+.|+...|++.+.+.|.
T Consensus 10 ~~LrIy~~E~d~~------~g~pL~~~Iv~~a~~~Gi 40 (127)
T 2dcl_A 10 LRLRIYIGENDKW------EGRPLYKVIVEKLREMGI 40 (127)
T ss_dssp EEEEEEEETTCEE------TTEEHHHHHHHHHHHTTC
T ss_pred EEEEEEEcccccc------CCcCHHHHHHHHHHHCCC
Confidence 3688999998887 488999999999996554
No 16
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=25.57 E-value=1.2e+02 Score=19.39 Aligned_cols=52 Identities=6% Similarity=0.031 Sum_probs=37.2
Q ss_pred cceeeEEeeccc--CcHHHHHHHHHHH-HcCCCCCCCeEec-CcHHHHHHHHHHHhcCC
Q 048122 50 DHKRFVLPLVYL--NNNVVQALLELAE-EFGLPTNGPLTVL-CDTAFMEYVVTLISHNV 104 (125)
Q Consensus 50 e~~RfvVp~~yL--~hp~F~~LL~~ae-EfG~~~~G~L~iP-C~~~~Fe~vl~~i~~~~ 104 (125)
++++|-+.-..| ..|.|++++...- |- ....|.++ .+...|+.++..+-.+.
T Consensus 33 ~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~---~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 33 EGREFPTHRSVLAACSQYFKKLFTSGAVVD---QQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred CCEEEeHHHHHHHHhCHHHHHHhcCCcccc---CCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 356777777777 4799999987543 32 35678888 68999999999887654
No 17
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=25.08 E-value=71 Score=25.25 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=37.1
Q ss_pred CeEEEEEec--ceeeEEeecccCcHHHHHHHHHHHHcCCC----CCCCeEecCcHHHHHHHHHHHhcC
Q 048122 42 GHFIVYTVD--HKRFVLPLVYLNNNVVQALLELAEEFGLP----TNGPLTVLCDTAFMEYVVTLISHN 103 (125)
Q Consensus 42 G~~~VyVGe--~~RfvVp~~yL~hp~F~~LL~~aeEfG~~----~~G~L~iPC~~~~Fe~vl~~i~~~ 103 (125)
=-+.||.|. -+.++ .+-.|.+.|+.++++||+ ++|.|.||- +...+++..+.+.
T Consensus 67 ~gV~v~~GGTl~E~~~------~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~~--~~~~~~I~~~~~~ 126 (251)
T 1qwg_A 67 WGIKVYPGGTLFEYAY------SKGKFDEFLNECEKLGFEAVEISDGSSDISL--EERNNAIKRAKDN 126 (251)
T ss_dssp TTCEEEECHHHHHHHH------HTTCHHHHHHHHHHHTCCEEEECCSSSCCCH--HHHHHHHHHHHHT
T ss_pred cCCeEECCcHHHHHHH------HcCcHHHHHHHHHHcCCCEEEECCCcccCCH--HHHHHHHHHHHHC
Confidence 446788875 22221 223899999999999998 699999994 4455666665544
No 18
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=24.59 E-value=7.8 Score=27.53 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=11.9
Q ss_pred ccccccCeEEEEEecceeeEEeecccCcHHHHHHHHHH
Q 048122 36 EKCYVKGHFIVYTVDHKRFVLPLVYLNNNVVQALLELA 73 (125)
Q Consensus 36 ~~~vpkG~~~VyVGe~~RfvVp~~yL~hp~F~~LL~~a 73 (125)
+..||+|-.--=+ .+-.|||||.|.-|-.-+
T Consensus 12 ~~~~~~~~~~~~m-------s~E~YLNHPTFGLLyrVc 42 (112)
T 3n5b_B 12 SGLVPRGSHMNPE-------NSETYINHPTWGLLYRIC 42 (112)
T ss_dssp ---------------------CCCEEEETTTEEEEEEE
T ss_pred CCcccCCccCCCc-------chhhhccCCccchheeee
Confidence 4567777442211 222399999998775543
No 19
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=23.53 E-value=86 Score=20.35 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=37.8
Q ss_pred EEEecceeeEEeecccC--cHHHHHHHHHHHHcCCCCCCCeEec--CcHHHHHHHHHHHhcC
Q 048122 46 VYTVDHKRFVLPLVYLN--NNVVQALLELAEEFGLPTNGPLTVL--CDTAFMEYVVTLISHN 103 (125)
Q Consensus 46 VyVGe~~RfvVp~~yL~--hp~F~~LL~~aeEfG~~~~G~L~iP--C~~~~Fe~vl~~i~~~ 103 (125)
+.|| +++|-+.-..|. .|.|++++.... ..+..|.+| .+...|+.++..+-.+
T Consensus 37 l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~~----~e~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 37 LIVE-RKEFRAHRAVLAACSEYFWQALVGQT----KNDLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEET-TEEEEECHHHHHHHBHHHHHHHTTCC----CSSCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred EEEC-CEEEechHHHHHHcCHHHHHHhcCCC----CCCcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 3344 566777666664 699999886543 225668887 7999999999988765
No 20
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=22.98 E-value=1.4e+02 Score=22.42 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=31.9
Q ss_pred ccCcHHHHHHHHHHHHcCCCCCCCeEecCcHHHHHHHHHHHhc
Q 048122 60 YLNNNVVQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLISH 102 (125)
Q Consensus 60 yL~hp~F~~LL~~aeEfG~~~~G~L~iPC~~~~Fe~vl~~i~~ 102 (125)
.+..|.|..+++.++|+|. ++.|-|....+..+..++++
T Consensus 133 ~~~~~~~~~~~~~a~~~gl----pv~iH~~~~~l~~~~~~l~~ 171 (294)
T 4i6k_A 133 ALNTPDWQKFLRNVESLNW----QVELHAPPKYLVQLLPQLNE 171 (294)
T ss_dssp CSSSHHHHHHHHHHHHTTC----EEEEECCHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHcCC----EEEEeeCcchHHHHHHHHHH
Confidence 4578999999999999987 47788888777788777764
No 21
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=21.39 E-value=5 Score=31.77 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=17.9
Q ss_pred cccccCeEEEEEecceeeEEeecccCcHHH
Q 048122 37 KCYVKGHFIVYTVDHKRFVLPLVYLNNNVV 66 (125)
Q Consensus 37 ~~vpkG~~~VyVGe~~RfvVp~~yL~hp~F 66 (125)
..+|+||+|+.-. -+=.-+=-.+|+||.|
T Consensus 208 l~AP~GHLP~~~~-lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQ-LRGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCC-TTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCcc-cccHHHHHHHHcCccc
Confidence 4589999998642 1111133467888876
No 22
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=20.93 E-value=1.5e+02 Score=21.42 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=38.1
Q ss_pred eeEEeecccC-----cHHHHHHHHHHH-HcCCCCCCCeEecCcHHHHHHHHHHHhcCCchhhhhHHHHhh-hccccCC
Q 048122 53 RFVLPLVYLN-----NNVVQALLELAE-EFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLI-AGSHRAS 123 (125)
Q Consensus 53 RfvVp~~yL~-----hp~F~~LL~~ae-EfG~~~~G~L~iPC~~~~Fe~vl~~i~~~~~~~~e~~~l~~~-~~~c~~~ 123 (125)
+=++-++-|. ||+=+.+++.-. ..|| |..-+.-.+..+++++... .+..+-..+ ..-|||-
T Consensus 72 ~~I~TiEgL~~~~~l~pvq~a~~~~~~~QCG~---------CtpG~imsa~all~~~~~p-t~~ei~~~l~gnlCRCt 139 (163)
T 1ffv_A 72 SEVLTVEGLANKGVLHAVQEGFYKEHGLQCGF---------CTPGMLMRAYRFLQENPNP-TEAEIRMGMTGNLCRCT 139 (163)
T ss_dssp CEEECGGGTSBTTBCCHHHHHHHHTTCCSSCS---------SHHHHHHHHHHHHHHCSSC-CHHHHHHHTTTCCCSSS
T ss_pred ceEEEECCCCCCCCcCHHHHHHHHhCCccCcc---------ccHhHHHHHHHHHHcCCCC-CHHHHHHHHcCCccCCC
Confidence 3355566665 999888888877 8888 5555666777777655322 222233333 4668884
No 23
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=20.75 E-value=1.3e+02 Score=19.29 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=35.0
Q ss_pred ecceeeEEeeccc-CcHHHHHHHHHHHHcCCCCCCCeEec-CcHHHHHHHHHHHh
Q 048122 49 VDHKRFVLPLVYL-NNNVVQALLELAEEFGLPTNGPLTVL-CDTAFMEYVVTLIS 101 (125)
Q Consensus 49 Ge~~RfvVp~~yL-~hp~F~~LL~~aeEfG~~~~G~L~iP-C~~~~Fe~vl~~i~ 101 (125)
.|++.|.|+-... ..+.|+.+++....+.=..+++|.|| -+...++.|+....
T Consensus 9 sDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~ 63 (97)
T 4ajy_C 9 SDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 63 (97)
T ss_dssp TTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHH
T ss_pred cCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHH
Confidence 4788899887654 47889988864211111246788887 78888999987776
Done!