Query 048122
Match_columns 125
No_of_seqs 127 out of 666
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 10:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048122.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048122hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y6ia2 a.261.1.1 (A:83-233) M 53.8 0.45 3.3E-05 33.6 -2.5 30 37-68 118-148 (151)
2 d1z3xa2 a.261.1.1 (A:88-235) G 48.8 0.4 2.9E-05 33.7 -3.5 29 37-66 118-146 (148)
3 d1zj8a1 d.58.36.1 (A:327-406) 48.4 9.1 0.00066 22.7 3.5 49 53-101 19-73 (80)
4 d1aopa1 d.58.36.1 (A:81-145) S 43.1 5.8 0.00042 23.2 1.8 32 53-86 3-34 (65)
5 d2r85a1 c.30.1.8 (A:1-99) 5-fo 41.3 0.37 2.7E-05 32.1 -4.4 23 36-58 64-88 (99)
6 d1v97a1 a.56.1.1 (A:93-165) Xa 38.4 19 0.0014 21.8 3.8 51 63-123 7-59 (73)
7 d2akja1 d.58.36.1 (A:346-430) 35.7 10 0.00073 23.1 2.2 26 53-78 23-48 (85)
8 d2bkfa1 d.15.2.2 (A:1-85) Next 35.4 21 0.0015 22.3 3.8 48 47-96 11-68 (85)
9 d1unda_ a.14.1.1 (A:) Advillin 33.9 5 0.00037 21.7 0.4 17 60-76 1-18 (36)
10 d2pbza1 c.30.1.8 (A:4-99) 5-fo 32.6 0.65 4.7E-05 30.7 -4.2 23 36-58 59-83 (96)
11 d1o51a_ d.58.5.4 (A:) Hypothet 31.0 19 0.0014 22.7 3.1 30 43-78 5-34 (102)
12 d1rm6c1 a.56.1.1 (C:82-157) 4- 30.7 37 0.0027 20.5 4.3 49 63-123 5-57 (76)
13 d1vlba1 a.56.1.1 (A:81-193) Al 30.0 46 0.0033 21.5 5.0 52 63-123 6-60 (113)
14 d2c0sa1 a.30.7.1 (A:1-57) Hypo 28.7 4.6 0.00033 24.1 -0.4 34 67-100 15-48 (57)
15 d1ffva1 a.56.1.1 (A:82-157) Ca 28.4 37 0.0027 20.5 4.0 51 63-123 6-58 (76)
16 d1tx4a_ a.116.1.1 (A:) p50 Rho 27.5 41 0.003 22.3 4.6 46 65-110 27-72 (196)
17 d1fc4a_ c.67.1.4 (A:) 2-amino- 26.1 33 0.0024 25.6 4.2 35 46-80 39-79 (401)
18 d1t3qa1 a.56.1.1 (A:88-168) Qu 25.2 52 0.0038 20.1 4.3 51 63-123 6-58 (81)
19 d2gmha2 d.16.1.8 (A:237-335) E 24.7 2.6 0.00019 27.3 -2.3 18 60-77 74-93 (99)
20 d1lf7a_ b.60.1.1 (A:) Compleme 23.5 60 0.0044 20.3 4.7 47 41-87 104-154 (171)
21 d1pzqa_ a.34.3.1 (A:) Erythron 22.9 20 0.0015 21.0 1.8 13 5-17 35-47 (60)
22 d1tjya_ c.93.1.1 (A:) AI-2 rec 22.8 43 0.0031 22.3 3.9 31 49-79 1-35 (316)
23 d2r7ka1 c.30.1.8 (A:1-123) 5-f 22.7 0.98 7.1E-05 31.0 -5.0 22 37-58 88-112 (123)
24 d2c9wc1 d.42.1.1 (C:17-112) El 22.3 56 0.0041 19.7 4.1 53 49-101 8-62 (96)
25 d1jroa1 a.56.1.1 (A:85-166) Xa 22.1 53 0.0039 20.1 3.9 48 63-123 5-53 (82)
26 d2al3a1 d.15.1.2 (A:10-85) Tet 21.1 43 0.0032 20.4 3.3 36 43-80 2-38 (76)
No 1
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=53.78 E-value=0.45 Score=33.57 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=19.4
Q ss_pred cccccCeEEEEEec-ceeeEEeecccCcHHHHH
Q 048122 37 KCYVKGHFIVYTVD-HKRFVLPLVYLNNNVVQA 68 (125)
Q Consensus 37 ~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~~ 68 (125)
..+|+||+|+.-.- +-| +=-..|+||.|.+
T Consensus 118 l~AP~GHLP~~~~lrG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHHH
T ss_pred CCCCCCCCCccchhhhHH--HHHHHHcCcchhh
Confidence 35899999986422 222 2234789998864
No 2
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=48.78 E-value=0.4 Score=33.72 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=18.2
Q ss_pred cccccCeEEEEEecceeeEEeecccCcHHH
Q 048122 37 KCYVKGHFIVYTVDHKRFVLPLVYLNNNVV 66 (125)
Q Consensus 37 ~~vpkG~~~VyVGe~~RfvVp~~yL~hp~F 66 (125)
..+|+||+|+. +..+-+-|=-..|+||.|
T Consensus 118 l~AP~GHLP~~-~~lrg~~~~~~~l~h~a~ 146 (148)
T d1z3xa2 118 LSAPRGHLPLT-NQLRGVQVLNALLNHPAW 146 (148)
T ss_dssp TTSCTTCCSCC-CCTTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcC-CccchHHHHHHHhcCccc
Confidence 35899999974 333333334456777765
No 3
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=48.41 E-value=9.1 Score=22.75 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=34.9
Q ss_pred eeEEeecccCcHHHHHHHHHHHHcCC-----CCCCCeEec-CcHHHHHHHHHHHh
Q 048122 53 RFVLPLVYLNNNVVQALLELAEEFGL-----PTNGPLTVL-CDTAFMEYVVTLIS 101 (125)
Q Consensus 53 RfvVp~~yL~hp~F~~LL~~aeEfG~-----~~~G~L~iP-C~~~~Fe~vl~~i~ 101 (125)
|.-+|.-.++....+.|.+.|++||- +....|.|+ =+.+..+.+...+.
T Consensus 19 ri~~p~G~it~~ql~~la~ia~~yg~g~i~lTtrq~l~l~~i~~~~~~~v~~~L~ 73 (80)
T d1zj8a1 19 GVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLD 73 (80)
T ss_dssp EEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEECHHHHHHHHHHHH
T ss_pred EEeccCcEECHHHHHHHHHHHHHhCCCeEEECCCCcEEEcCCCHHHHHHHHHHHH
Confidence 55677778999999999999999974 234556666 45566666665553
No 4
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=43.12 E-value=5.8 Score=23.17 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=23.4
Q ss_pred eeEEeecccCcHHHHHHHHHHHHcCCCCCCCeEe
Q 048122 53 RFVLPLVYLNNNVVQALLELAEEFGLPTNGPLTV 86 (125)
Q Consensus 53 RfvVp~~yL~hp~F~~LL~~aeEfG~~~~G~L~i 86 (125)
|.-+|--.++..-++.|-+.|++|| .+|.|.+
T Consensus 3 RiriPgG~it~~ql~~la~ia~kyg--~~g~i~~ 34 (65)
T d1aopa1 3 RCRLPGGVITTKQWQAIDKFAGENT--IYGSIRL 34 (65)
T ss_dssp ECCCGGGEEEHHHHHHHHHHHHHHB--SSCCEEE
T ss_pred EEecCCCCcCHHHHHHHHHHHHHhc--CCCceee
Confidence 5556666788888999999999887 2344444
No 5
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=41.28 E-value=0.37 Score=32.06 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=17.5
Q ss_pred ccccccCeEEEEEe-cc-eeeEEee
Q 048122 36 EKCYVKGHFIVYTV-DH-KRFVLPL 58 (125)
Q Consensus 36 ~~~vpkG~~~VyVG-e~-~RfvVp~ 58 (125)
..-+|.|.|++|+| |+ +.|-||+
T Consensus 64 ~I~IPhgSfv~Y~G~d~ie~~~VP~ 88 (99)
T d2r85a1 64 AVVVPTGSFVAHLGIELVENMKVPY 88 (99)
T ss_dssp EEECCCTTHHHHHCHHHHHTCCSCB
T ss_pred EEEecCCCEEEEEcHHHHhcCCCCc
Confidence 34689999999999 42 4487775
No 6
>d1v97a1 a.56.1.1 (A:93-165) Xanthine oxidase, domain 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=38.40 E-value=19 Score=21.85 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHH-HcCCCCCCCeEecCcHHHHHHHHHHHhcCCchhhhhHHHHhhh-ccccCC
Q 048122 63 NNVVQALLELAE-EFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIA-GSHRAS 123 (125)
Q Consensus 63 hp~F~~LL~~ae-EfG~~~~G~L~iPC~~~~Fe~vl~~i~~~~~~~~e~~~l~~~~-~~c~~~ 123 (125)
||+=+++++.-. ..|| |..-+.-.+..++++....+-|. +-..++ .-|||-
T Consensus 7 hpvQ~Af~~~~a~QCGy---------CtPG~vm~~~~ll~~~~~pt~~~-i~~alsGnlCRCt 59 (73)
T d1v97a1 7 HPVQERIAKSHGSQCGF---------CTPGIVMSMYTLLRNQPEPTVEE-IEDAFQGNLCRCT 59 (73)
T ss_dssp CHHHHHHHHTTCCSSCS---------SHHHHHHHHHHHHHHCSSCCHHH-HHHTTTTCCCSSS
T ss_pred CHHHHHHHHcCCCCCCC---------CchHHHHHHHHHHHhCCcCCHHH-HHHHHCcccccCC
Confidence 788888888777 7888 66677778888887764332222 223333 558884
No 7
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=35.67 E-value=10 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.8
Q ss_pred eeEEeecccCcHHHHHHHHHHHHcCC
Q 048122 53 RFVLPLVYLNNNVVQALLELAEEFGL 78 (125)
Q Consensus 53 RfvVp~~yL~hp~F~~LL~~aeEfG~ 78 (125)
|+-+|.-.|+..-++.|-+.|++||-
T Consensus 23 ri~~p~G~lt~~ql~~la~ia~~yg~ 48 (85)
T d2akja1 23 GLHIPVGRLQADEMEELARIADVYGS 48 (85)
T ss_dssp EECCGGGEECHHHHHHHHHHHHHHSS
T ss_pred EEEcCCcEeCHHHHHHHHHHHHHHCC
Confidence 56677888999999999999999984
No 8
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.43 E-value=21 Score=22.28 Aligned_cols=48 Identities=10% Similarity=0.251 Sum_probs=34.1
Q ss_pred EEecceeeEEeecccCcHHHHHHHHHHH-HcCC--------CCC-CCeEecCcHHHHHHH
Q 048122 47 YTVDHKRFVLPLVYLNNNVVQALLELAE-EFGL--------PTN-GPLTVLCDTAFMEYV 96 (125)
Q Consensus 47 yVGe~~RfvVp~~yL~hp~F~~LL~~ae-EfG~--------~~~-G~L~iPC~~~~Fe~v 96 (125)
|-||-.||.++.. +++.|.+|..+-+ -||. +.| --++|.|++++=|-+
T Consensus 11 f~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~~ 68 (85)
T d2bkfa1 11 FKNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEAL 68 (85)
T ss_dssp ETTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHH
T ss_pred ECCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHHH
Confidence 4457899988543 4677899999888 8885 233 358899998765543
No 9
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.91 E-value=5 Score=21.65 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=15.2
Q ss_pred ccCcHHHHHHHHHHH-Hc
Q 048122 60 YLNNNVVQALLELAE-EF 76 (125)
Q Consensus 60 yL~hp~F~~LL~~ae-Ef 76 (125)
||+.-.|++++.++. ||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 788999999999988 87
No 10
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=32.63 E-value=0.65 Score=30.68 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=17.2
Q ss_pred ccccccCeEEEEEe-c-ceeeEEee
Q 048122 36 EKCYVKGHFIVYTV-D-HKRFVLPL 58 (125)
Q Consensus 36 ~~~vpkG~~~VyVG-e-~~RfvVp~ 58 (125)
..-+|.|.|++|+| | -+.+.||+
T Consensus 59 aI~IPhgSfv~Y~G~~~ie~~~VP~ 83 (96)
T d2pbza1 59 GIVVPHGSFVAYLGIEAIEKAKARF 83 (96)
T ss_dssp SBCCCBTTHHHHSCHHHHHTCCSCC
T ss_pred eEEEcCCCEEEEecHHHHhhCCCCc
Confidence 45699999999999 3 24566664
No 11
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
Probab=30.99 E-value=19 Score=22.66 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=24.1
Q ss_pred eEEEEEecceeeEEeecccCcHHHHHHHHHHHHcCC
Q 048122 43 HFIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFGL 78 (125)
Q Consensus 43 ~~~VyVGe~~RfvVp~~yL~hp~F~~LL~~aeEfG~ 78 (125)
.+-+|+++..|+ =+.|+...|++.+.|-|.
T Consensus 5 lLrIy~~e~~~~------~g~pl~~~iv~~ar~~gi 34 (102)
T d1o51a_ 5 LLKIYLGEKDKH------SGKPLFEYLVKRAYELGM 34 (102)
T ss_dssp EEEEEEETTCEE------TTEEHHHHHHHHHHHTTC
T ss_pred EEEEEEcchhcC------CceEHHHHHHHHHHHCCC
Confidence 367899987775 589999999999995444
No 12
>d1rm6c1 a.56.1.1 (C:82-157) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, C-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=30.75 E-value=37 Score=20.51 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHH-HcCCCCCCCeEecCcHHHHHHHHHHHhcCCch---hhhhHHHHhhhccccCC
Q 048122 63 NNVVQALLELAE-EFGLPTNGPLTVLCDTAFMEYVVTLISHNVNE---DAERPLLTLIAGSHRAS 123 (125)
Q Consensus 63 hp~F~~LL~~ae-EfG~~~~G~L~iPC~~~~Fe~vl~~i~~~~~~---~~e~~~l~~~~~~c~~~ 123 (125)
||+=+++++.-. ..|| |..-+--.+..++++.... |++.+| -..-|||-
T Consensus 5 ~~vQ~Af~~~~a~QCGy---------CtPG~im~~~~ll~~~~~ps~~ei~~~l---~GnlCRCt 57 (76)
T d1rm6c1 5 SKLQAAFHEKLGTQCGF---------CTPGMIMASEALLRKNPSPSRDEIKAAL---AGNLCRCT 57 (76)
T ss_dssp CHHHHHHHHHTCCSSCS---------SHHHHHHHHHHHHHHCSSCCHHHHHHHT---TTCCCSSS
T ss_pred cHHHHHHHHhCCCcCCC---------CchHHHHHHHHHHHcCCCcchHHHHHHH---hCCcCcCC
Confidence 788888888777 8888 6666666777777765433 333332 22458884
No 13
>d1vlba1 a.56.1.1 (A:81-193) Aldehyde oxidoreductase, domain 2 {Desulfovibrio gigas [TaxId: 879]}
Probab=29.96 E-value=46 Score=21.51 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHH-HcCCCCCCCeEecCcHHHHHHHHHHHhcCCch--hhhhHHHHhhhccccCC
Q 048122 63 NNVVQALLELAE-EFGLPTNGPLTVLCDTAFMEYVVTLISHNVNE--DAERPLLTLIAGSHRAS 123 (125)
Q Consensus 63 hp~F~~LL~~ae-EfG~~~~G~L~iPC~~~~Fe~vl~~i~~~~~~--~~e~~~l~~~~~~c~~~ 123 (125)
||+=+++++.-. ..|| |..-+.-.+..++++.... |--+..|+....-|||-
T Consensus 6 hpvQ~Af~~~~~~QCGf---------CtPG~vms~~~ll~~~~~p~~~~i~~~l~g~~NlCRCt 60 (113)
T d1vlba1 6 HPLQKAWVLHGGAQCGF---------CSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCT 60 (113)
T ss_dssp CHHHHHHHHHTCCSSCT---------THHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCCSSS
T ss_pred CHHHHHHHHhCCCCCCC---------cchHHHHHHHHHHHcCCCcccchHHHHHHhcCCccccc
Confidence 888888888777 8888 5556666777777765432 22223344444569994
No 14
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=28.67 E-value=4.6 Score=24.06 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCCCCCCeEecCcHHHHHHHHHHH
Q 048122 67 QALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLI 100 (125)
Q Consensus 67 ~~LL~~aeEfG~~~~G~L~iPC~~~~Fe~vl~~i 100 (125)
.+|...++.|||+++-+|..+=+.+..-..++.+
T Consensus 15 ~eLi~Lv~~YGf~h~kvl~~SQELD~LIN~~m~~ 48 (57)
T d2c0sa1 15 KELIYLVEKYGFTHHKVISFSQELDRLLNLLIEL 48 (57)
T ss_dssp HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4667777789999874444433334343333433
No 15
>d1ffva1 a.56.1.1 (A:82-157) Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=28.42 E-value=37 Score=20.52 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHH-HcCCCCCCCeEecCcHHHHHHHHHHHhcCCchhhhhHHHHhhh-ccccCC
Q 048122 63 NNVVQALLELAE-EFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIA-GSHRAS 123 (125)
Q Consensus 63 hp~F~~LL~~ae-EfG~~~~G~L~iPC~~~~Fe~vl~~i~~~~~~~~e~~~l~~~~-~~c~~~ 123 (125)
||+=+++++.-. ..|| |..-+.-.+..+++++... .+..+-..++ .-|||-
T Consensus 6 hpvQ~Af~~~~a~QCGy---------CtPG~im~~~~ll~~~~~p-t~~ei~~~lsGnlCRCt 58 (76)
T d1ffva1 6 HAVQEGFYKEHGLQCGF---------CTPGMLMRAYRFLQENPNP-TEAEIRMGMTGNLCRCT 58 (76)
T ss_dssp CHHHHHHHHTTCCSSCS---------SHHHHHHHHHHHHHHCSSC-CHHHHHHHTTTCCCSSS
T ss_pred cHHHHHHHHcCCCcCCC---------cchHHHHHHHHHHHhCccc-chHHHHHHHhCCcCcCC
Confidence 787778877777 7888 5556666777777766543 3444455554 458884
No 16
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.51 E-value=41 Score=22.33 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCCCCCeEecCcHHHHHHHHHHHhcCCchhhhh
Q 048122 65 VVQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAER 110 (125)
Q Consensus 65 ~F~~LL~~aeEfG~~~~G~L~iPC~~~~Fe~vl~~i~~~~~~~~e~ 110 (125)
++..+++.-++.|...+|.-++|-+....+.+...++++..-+.++
T Consensus 27 ~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~ 72 (196)
T d1tx4a_ 27 VLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQ 72 (196)
T ss_dssp HHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGG
T ss_pred HHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhCCCCccccc
Confidence 4566666666779999999999999999999999999877665543
No 17
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=26.06 E-value=33 Score=25.60 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=26.2
Q ss_pred EEEecceeeE--EeecccC---cHHHHHHHHHHH-HcCCCC
Q 048122 46 VYTVDHKRFV--LPLVYLN---NNVVQALLELAE-EFGLPT 80 (125)
Q Consensus 46 VyVGe~~Rfv--Vp~~yL~---hp~F~~LL~~ae-EfG~~~ 80 (125)
|++.|+++|+ ..-+||+ ||.+++....+- .||...
T Consensus 39 v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~ 79 (401)
T d1fc4a_ 39 ITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGM 79 (401)
T ss_dssp EEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCC
T ss_pred EEecCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCc
Confidence 4556778875 3446763 999999999988 999754
No 18
>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small subunit QorS, C-domain {Pseudomonas putida [TaxId: 303]}
Probab=25.19 E-value=52 Score=20.05 Aligned_cols=51 Identities=10% Similarity=0.289 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHH-HcCCCCCCCeEecCcHHHHHHHHHHHhcCCchhhhhHHHHhh-hccccCC
Q 048122 63 NNVVQALLELAE-EFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLI-AGSHRAS 123 (125)
Q Consensus 63 hp~F~~LL~~ae-EfG~~~~G~L~iPC~~~~Fe~vl~~i~~~~~~~~e~~~l~~~-~~~c~~~ 123 (125)
||+=+.+++.-. ..|| |..-+.-.+..+++++...+ +..+-..+ ..-|||-
T Consensus 6 ~pvQ~Af~~~~a~QCGf---------CtPG~vm~~~~ll~~~~~ps-~~ei~~al~GnlCRCt 58 (81)
T d1t3qa1 6 NALQDSFRRHHALQCGF---------CTAGMLATARSILAENPAPS-RDEVREVMSGNLCRCT 58 (81)
T ss_dssp CHHHHHHHHTTCCSSCS---------SHHHHHHHHHHHHHHCSSCC-HHHHHHHGGGSCCSSS
T ss_pred CHHHHHHHHcCCCCCCC---------CchHHHHHHHHHHhcCCCCC-HHHHHHHHcCCcCcCC
Confidence 687788877666 7788 66666777777787664322 22233333 3558884
No 19
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=24.71 E-value=2.6 Score=27.35 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=14.6
Q ss_pred ccCcHHHHHHHHHHH--HcC
Q 048122 60 YLNNNVVQALLELAE--EFG 77 (125)
Q Consensus 60 yL~hp~F~~LL~~ae--EfG 77 (125)
|-+||.++-||+-.+ |||
T Consensus 74 fK~HP~I~~ll~GG~~~eYg 93 (99)
T d2gmha2 74 WKHHPSIKPTLEGGKRIAYG 93 (99)
T ss_dssp HTTSTTTHHHHTTCEEEEEE
T ss_pred HhcCHHHHHHhcCCEEEEee
Confidence 346899999999888 886
No 20
>d1lf7a_ b.60.1.1 (A:) Complement protein C8gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.54 E-value=60 Score=20.27 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=32.1
Q ss_pred cCeEEEEEecc-ee---eEEeecccCcHHHHHHHHHHHHcCCCCCCCeEec
Q 048122 41 KGHFIVYTVDH-KR---FVLPLVYLNNNVVQALLELAEEFGLPTNGPLTVL 87 (125)
Q Consensus 41 kG~~~VyVGe~-~R---fvVp~~yL~hp~F~~LL~~aeEfG~~~~G~L~iP 87 (125)
..|..||+++. .+ ++=+..-++.....++.+.+++.||+.+..+.+|
T Consensus 104 ~~Yai~~~~~~~~~~~~llsR~p~~~~~~~~~f~~~~~~~G~~~~~i~~~~ 154 (171)
T d1lf7a_ 104 QSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIFYFP 154 (171)
T ss_dssp SSEEEEEEEETTEEEEEEEESSSSCCHHHHHHHHHHHHHTTCCGGGEEECC
T ss_pred hheEEEEEeCCCcEEEEEEECCCCCCHHHHHHHHHHHHHcCCCHHHEEECC
Confidence 56777777642 22 2334445677788888888889999877666665
No 21
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=22.88 E-value=20 Score=20.98 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhh
Q 048122 5 KKLIKLARKWQKL 17 (125)
Q Consensus 5 ~kL~~~~rKWq~~ 17 (125)
-||-.+.|+||+.
T Consensus 35 ~rle~llrrw~sr 47 (60)
T d1pzqa_ 35 QRLESLLRRWNSR 47 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 4788999999986
No 22
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=22.76 E-value=43 Score=22.32 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=23.0
Q ss_pred ecceeeEEeecccCcHHHHHHHHHHH----HcCCC
Q 048122 49 VDHKRFVLPLVYLNNNVVQALLELAE----EFGLP 79 (125)
Q Consensus 49 Ge~~RfvVp~~yL~hp~F~~LL~~ae----EfG~~ 79 (125)
|..+|..+=+..++||.|..+.+-++ ++|++
T Consensus 1 G~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 1 GSAERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CCCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 34566666788899999999876544 78874
No 23
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=22.72 E-value=0.98 Score=30.97 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=17.4
Q ss_pred cccccCeEEEEEe-cc--eeeEEee
Q 048122 37 KCYVKGHFIVYTV-DH--KRFVLPL 58 (125)
Q Consensus 37 ~~vpkG~~~VyVG-e~--~RfvVp~ 58 (125)
.-+|.|.|++|+| |+ +.|-||+
T Consensus 88 I~IPhgSfv~Y~G~~~ie~~~~VP~ 112 (123)
T d2r7ka1 88 IVVPHGSFIAYCGLDNVENSFLVPM 112 (123)
T ss_dssp EECCBHHHHHHHCHHHHHHTCCSCB
T ss_pred EEecCCCeeeeecHHHHHhcCCCCe
Confidence 4589999999999 42 4688875
No 24
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.33 E-value=56 Score=19.74 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=32.2
Q ss_pred ecceeeEEeecccC-cHHHHHHHHHHHHcCCCCCCCeEec-CcHHHHHHHHHHHh
Q 048122 49 VDHKRFVLPLVYLN-NNVVQALLELAEEFGLPTNGPLTVL-CDTAFMEYVVTLIS 101 (125)
Q Consensus 49 Ge~~RfvVp~~yL~-hp~F~~LL~~aeEfG~~~~G~L~iP-C~~~~Fe~vl~~i~ 101 (125)
.|+.+|.|+.+... .+.++.+|+....++=..+++|.|| =+...++.|+...+
T Consensus 8 sDg~~f~V~~~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~ 62 (96)
T d2c9wc1 8 SDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62 (96)
T ss_dssp TTCCEEEEEHHHHTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEeeHHHHHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHH
Confidence 47899999988875 5688888865433332356778887 47788888887664
No 25
>d1jroa1 a.56.1.1 (A:85-166) Xanthine dehydrogenase chain A, domain 2 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=22.11 E-value=53 Score=20.06 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHH-HcCCCCCCCeEecCcHHHHHHHHHHHhcCCchhhhhHHHHhhhccccCC
Q 048122 63 NNVVQALLELAE-EFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIAGSHRAS 123 (125)
Q Consensus 63 hp~F~~LL~~ae-EfG~~~~G~L~iPC~~~~Fe~vl~~i~~~~~~~~e~~~l~~~~~~c~~~ 123 (125)
||+=+++++.-. ..||-..| +--.+..++++ ..++++.+|= ..-|||-
T Consensus 5 hpvQ~Af~~~~~~QCGyCtPG---------~vm~~~~ll~~-~~~~i~~~l~---GnlCRCt 53 (82)
T d1jroa1 5 HPVQQAMIDHHGSQCGFCTPG---------FIVSMAAAHDR-DRKDYDDLLA---GNLCRCT 53 (82)
T ss_dssp CHHHHHHHHTTCCSSCTTHHH---------HHHHHHHHHHT-TCCCHHHHHT---TCCCSSS
T ss_pred cHHHHHHHHcCCCCCCCCchh---------HHHHHHHHHhc-cchhHHHHHc---CCccccc
Confidence 888888888877 88884433 33345566655 4567777642 3558884
No 26
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.07 E-value=43 Score=20.37 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=25.5
Q ss_pred eEEEEEecceeeEEeecccCcHHHHHHHHHHH-HcCCCC
Q 048122 43 HFIVYTVDHKRFVLPLVYLNNNVVQALLELAE-EFGLPT 80 (125)
Q Consensus 43 ~~~VyVGe~~RfvVp~~yL~hp~F~~LL~~ae-EfG~~~ 80 (125)
++.|..-..+|..|++.= .-...+.|++|- .|||+.
T Consensus 2 ~V~Vl~~~~rR~~VKvtP--~t~l~~VL~eaC~k~~~~~ 38 (76)
T d2al3a1 2 AVSVLAPNGRRHTVKVTP--STVLLQVLEDTCRRQDFNP 38 (76)
T ss_dssp CEEEECTTSCEEEECCCT--TSBHHHHHHHHHHHTTCCG
T ss_pred cEEEECCCCcEEEEEeCC--CcCHHHHHHHHHHHhCCCh
Confidence 345555568999998853 235677788888 999974
Done!