BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048123
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 77 KIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
+IFA+PV EV DY IKHPMD + + ++L Y+ L +FE D L++ N M +NA
Sbjct: 32 RIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNAR 91
Query: 137 DTVYYRQAHAMKELANKLFRTLKN--DPENFEAACSM 171
DTV+YR A +++ + R + D E A M
Sbjct: 92 DTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASGM 128
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 76 YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNA 135
+++F KPVD EV DY VIK PMDLS + K++ Y T+ D+ DI L+ NA+ +N
Sbjct: 28 FRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87
Query: 136 S----DTVYYRQAHAMKELANKLFRTLKNDPENFEAACS 170
D + +A A+++ A + + + E+FE C
Sbjct: 88 DRDPGDRLIRHRACALRDTAYAIIKEELD--EDFEQLCE 124
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 76 YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNA 135
+ IF+KPVD EV DY +VIK PMDLS + K+++ +Y T DF DI L+ NA+ +N
Sbjct: 30 FNIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 89
Query: 136 S----DTVYYRQAHAMKELANKLFRTLKNDPENFEAACS 170
D + +A +K+ A+ + + DPE F C
Sbjct: 90 DKDPGDKIIRHRACTLKDTAHAIIAA-ELDPE-FNKLCE 126
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%)
Query: 78 IFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137
IF++PV +EV DY IK PMD + + L Y DFE D L++ N + +NA D
Sbjct: 27 IFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKD 86
Query: 138 TVYYRQAHAMKELANKLFRTLKNDPENFEAACS 170
T++YR A ++E + R + E + S
Sbjct: 87 TIFYRAAVRLREQGGAVLRQARRQAEKMGSGPS 119
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PV+ EV DYY IK PMDLS + KL YQ + DF +D L+ N +N +T
Sbjct: 34 FLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENT 93
Query: 139 VYYRQAHAMKELAN 152
YY+ A+ +++ N
Sbjct: 94 SYYKYANRLEKFFN 107
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PVD + DYY VIK PMDL+ + E++ Y+ L +F D+ + N ++N SD+
Sbjct: 93 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 152
Query: 139 VYYRQAHAMKELANKLFRTLK 159
+Y+ A ++ + + K
Sbjct: 153 PFYQCAEVLESFFVQKLKGFK 173
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PVD + DYY VIK PMDL+ + E++ Y+ L +F D+ + N ++N SD+
Sbjct: 93 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 152
Query: 139 VYYRQAHAMKELANKLFRTLK 159
+Y+ A ++ + + K
Sbjct: 153 PFYQCAEVLESFFVQKLKGFK 173
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PVD + DYY VIK PMDL+ + E++ Y+ L +F D+ + N ++N SD+
Sbjct: 34 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTAIFDNCRYYNPSDS 93
Query: 139 VYYRQAHAMKEL 150
+Y+ A ++
Sbjct: 94 PFYQCAEVLESF 105
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PVD + DYY VIK PMDL+ + E++ Y+ L +F D+ + N ++N SD+
Sbjct: 41 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 100
Query: 139 VYYRQAHAMKEL 150
+Y+ A ++
Sbjct: 101 PFYQCAEVLESF 112
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 78 IFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137
FA PV Y +IKHPMD + +K+ Y+++ +F+ D LM NAM +N D
Sbjct: 33 FFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPD 92
Query: 138 TVYYRQA 144
TVYY+ A
Sbjct: 93 TVYYKLA 99
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PVD + DYY VIK PMDL+ + E++ Y+ L +F D+ + N ++N SD+
Sbjct: 34 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 93
Query: 139 VYYRQAHAMKEL 150
+Y+ A ++
Sbjct: 94 PFYQCAEVLESF 105
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 79 FAKPVDG--TEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD + DY+ ++K PMDLS I KL+ G YQ + DI+LM NA +N
Sbjct: 38 FRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRK 97
Query: 137 DTVYYRQAHAMKEL 150
+ Y+ + E+
Sbjct: 98 TSRVYKYCSKLSEV 111
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 76 YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN- 134
+ IF+KPV DY +VIK PMDLS + K+++ +Y T DF DI L+ NA+ +N
Sbjct: 30 FNIFSKPV-----SDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 84
Query: 135 ---ASDTVYYRQAHAMKELANKLFRTLKNDPENFEAAC 169
D + +A +K+ A+ + + DPE F C
Sbjct: 85 DKDPGDKIIRHRACTLKDTAHAIIAA-ELDPE-FNKLC 120
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V DYYKVI +PMDL I + +++ YQ+ F D+ L+L N++ +N ++
Sbjct: 191 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250
Query: 139 VYYRQAHAMKELANKLFRTL 158
Y + A +E+ N ++TL
Sbjct: 251 QYTKTA---QEIVNVCYQTL 267
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V+DYYK+I PMDL + E + + Y + +F + L++KN+ +N
Sbjct: 68 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 127
Query: 139 VYYRQAHAMKELANK 153
+ + +M +L ++
Sbjct: 128 SLTQISQSMLDLCDE 142
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V DYYKVI +PMDL I + +++ YQ+ F D+ L+L N++ +N ++
Sbjct: 170 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 229
Query: 139 VYYRQAHAMKELANKLFRTL 158
Y + A +E+ N ++TL
Sbjct: 230 QYTKTA---QEIVNVCYQTL 246
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V+DYYK+I PMDL + E + + Y + +F + L++KN+ +N
Sbjct: 47 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 106
Query: 139 VYYRQAHAMKELANK 153
+ + +M +L ++
Sbjct: 107 SLTQISQSMLDLCDE 121
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V Y KVIK PMD S I EKL+ G Y L F D+ L+ N FN D+
Sbjct: 34 FLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDS 93
Query: 139 VYYRQAHAMKELANK 153
R H M++ K
Sbjct: 94 DIGRAGHNMRKYFEK 108
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V DYYKVI +PMDL I + +++ YQ+ F D+ L+L N++ +N ++
Sbjct: 158 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 217
Query: 139 VYYRQAHAMKELANKLFRTL 158
Y + A +E+ N ++TL
Sbjct: 218 QYTKTA---QEIVNVCYQTL 234
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V+DYYK+I PMDL + E + + Y + +F + L++KN+ +N
Sbjct: 35 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 94
Query: 139 VYYRQAHAMKELANK 153
+ + +M +L ++
Sbjct: 95 SLTQISQSMLDLCDE 109
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 79 FAKPVDG--TEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD + DY+ ++K+PMDLS I KL+ G YQ + D++LM NA +N
Sbjct: 33 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 92
Query: 137 DTVYYRQAHAMKEL 150
+ Y+ + E+
Sbjct: 93 TSRVYKFCSKLAEV 106
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 78 IFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137
F+ PV Y +IKHPMD S + EK+ YQ++ + + + LM NAM +N +
Sbjct: 28 FFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPE 87
Query: 138 TVYYRQAHAM 147
T+YY+ A +
Sbjct: 88 TIYYKAAKKL 97
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 79 FAKPVDG--TEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD + DY+ ++K+PMDLS I KL+ G YQ + D++LM NA +N
Sbjct: 35 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 94
Query: 137 DTVYYRQAHAMKEL 150
+ Y+ + E+
Sbjct: 95 TSRVYKFCSKLAEV 108
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V Y KVIK PMD S I EKL+ G Y L F D+ L+ N FN D+
Sbjct: 31 FLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDS 90
Query: 139 VYYRQAHAMKELANK 153
R H M++ K
Sbjct: 91 DIGRAGHNMRKYFEK 105
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V DYYKVI +PMDL I + +++ YQ+ F D+ L+L N++ +N ++
Sbjct: 51 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 110
Query: 139 VYYRQAHAMKELANKLFRTL 158
Y + A +E+ N ++TL
Sbjct: 111 QYTKTA---QEIVNVCYQTL 127
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PVD + DYY VIK P DL+ E++ Y+ L +F D + N ++N SD+
Sbjct: 93 FLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRYYEKLTEFVADXTKIFDNCRYYNPSDS 152
Query: 139 VYYRQAHAMKELANKLFRTLK 159
+Y+ A ++ + + K
Sbjct: 153 PFYQCAEVLESFFVQKLKGFK 173
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 79 FAKPVD--GTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD + DY +IKHPMD+S I KL Y+ +F D+ LM N +N
Sbjct: 33 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPP 92
Query: 137 DTVYYRQAHAMKELANKLFRTLKNDPEN 164
D A ++++ F + ++PE
Sbjct: 93 DHEVVAMARKLQDVFEMRFAKMPDEPEE 120
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PV +E DYY+VI+ P+DL +TE+L Y T F D+ ++ N +N D+
Sbjct: 24 FMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDS 83
Query: 139 VYYRQAHAMKEL 150
Y R A A+++
Sbjct: 84 EYCRCASALEKF 95
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PV +E DYY+VI+ P+DL +TE+L Y T F D+ ++ N +N D+
Sbjct: 28 FMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDS 87
Query: 139 VYYRQAHAMKEL 150
Y R A A+++
Sbjct: 88 EYCRCASALEKF 99
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 51/90 (56%)
Query: 77 KIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
++F + E+ +YY++I+ P+D KI E++ Y++L D E D+ L+ +NA FN
Sbjct: 33 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 92
Query: 137 DTVYYRQAHAMKELANKLFRTLKNDPENFE 166
++ Y + ++ + + + ++ + ++ E
Sbjct: 93 GSLIYEDSIVLQSVFTSVRQKIEKEDDSLE 122
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNE--GSYQTLGDFEHDIYLMLKNAMHFNAS 136
F PV T V DYYK+IK+PMDLS I ++L E Y DF D L+ +N FN
Sbjct: 102 FQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 160
Query: 137 DTVYYRQAHAMKELANKLFRTLKN 160
D+ A+A +L N LKN
Sbjct: 161 DS---EVANAGIKLENYFEELLKN 181
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PVD + +YY++IK PMD+S + +KLN G Y T +F +D+ M +N +N +
Sbjct: 37 FLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESS 96
Query: 139 VY 140
Y
Sbjct: 97 EY 98
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 77 KIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
++F + E+ +YY++I+ P+D KI E++ Y++LGD E D+ L+ NA FN
Sbjct: 38 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLE 97
Query: 137 DTVYYRQAHAMKEL 150
+ Y + ++ +
Sbjct: 98 GSQIYEDSIVLQSV 111
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 77 KIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
++F + E+ +YY++I+ P+D KI E++ Y++L D E D+ L+ +NA FN
Sbjct: 38 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 97
Query: 137 DTVYYRQAHAMK 148
++ Y + ++
Sbjct: 98 GSLIYEDSIVLQ 109
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 77 KIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
++F + E+ +YY++I+ P+D KI E++ Y++L D E D+ L+ +NA FN
Sbjct: 37 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 96
Query: 137 DTVYYRQAHAMK 148
++ Y + ++
Sbjct: 97 GSLIYEDSIVLQ 108
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 77 KIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
++F K + DYY +IK P+DL I +++ GSY+++ DI L+ KNA +N
Sbjct: 34 ELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEP 93
Query: 137 DTVYYRQAHAMKELANKLFRTLKNDPENFEAA 168
+ ++ A+++K K+F K + E+ E A
Sbjct: 94 GSQVFKDANSIK----KIFYMKKAEIEHHEMA 121
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNE--GSYQTLGDFEHDIYLMLKNAMHFNAS 136
F PV T V DYYK+IK+PMDLS I ++L E Y DF D L+ +N FN
Sbjct: 41 FQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 99
Query: 137 DTVYYRQAHAMKELANKLFRTLKN 160
D+ A+A +L N LKN
Sbjct: 100 DS---EVANAGIKLENYFEELLKN 120
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 77 KIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
++F K + DYY +IK P+DL I +++ GSY+++ DI L+ KNA +N
Sbjct: 33 ELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEP 92
Query: 137 DTVYYRQAHAMKELANKLFRTLKNDPENFEAA 168
+ ++ A+++K K+F K + E+ E A
Sbjct: 93 GSQVFKDANSIK----KIFYMKKAEIEHHEMA 120
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD + + DY+ +IKHPMDLS + K+ Y+ +F D+ LM N +N
Sbjct: 31 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 90
Query: 137 D 137
D
Sbjct: 91 D 91
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 79 FAKPVDG--TEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD E+ DY+ +IKHPMDLS + K++ Y F D+ LM N +N
Sbjct: 31 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 90
Query: 137 D 137
D
Sbjct: 91 D 91
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD + + DY+ +IKHPMDLS + K+ Y+ +F D+ LM N +N
Sbjct: 25 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 84
Query: 137 D 137
D
Sbjct: 85 D 85
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD + + DY+ +IKHPMDLS + K+ Y+ +F D+ LM N +N
Sbjct: 29 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 88
Query: 137 D 137
D
Sbjct: 89 D 89
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 79 FAKPVDG--TEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD E+ DY+ +IKHPMDLS + K++ Y F D+ LM N +N
Sbjct: 36 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 95
Query: 137 D 137
D
Sbjct: 96 D 96
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 77 KIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
++F K + DYY +IK P+DL I +++ GSY+++ DI L+ KNA +N
Sbjct: 31 ELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEP 90
Query: 137 DTVYYRQAHAMKEL 150
+ ++ A+++K++
Sbjct: 91 GSQVFKDANSIKKI 104
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F PV+ V DYYK+I +P+DL I + +++ YQ+ F D+ L+L N++ +N ++
Sbjct: 48 FHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 107
Query: 139 VYYRQAHAMKELANKLFRTL 158
Y + A +E+ N ++T+
Sbjct: 108 QYTKTA---QEIVNICYQTI 124
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 79 FAKPVD--GTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD + DY +IKHPMD+S I KL Y+ +F D+ LM N +N
Sbjct: 46 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 105
Query: 137 DTVYYRQAHAMKELANKLFRTLKND 161
D A ++++ F + ++
Sbjct: 106 DHEVVAMARKLQDVFEMRFAKMPDE 130
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 79 FAKPVD--GTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD + DY +IKHPMD+S I KL Y+ +F D+ LM N +N
Sbjct: 44 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 103
Query: 137 DTVYYRQAHAMKELANKLFRTLKND 161
D A ++++ F + ++
Sbjct: 104 DHEVVAMARKLQDVFEMRFAKMPDE 128
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F + VD E+ +YY+++ PM LS + + L G Y + DF D+ L+ +NA FN
Sbjct: 234 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 293
Query: 139 VYYRQAHAMKELANKLFR 156
+ Y+ A + N L +
Sbjct: 294 LIYKDATTLTNYFNYLIQ 311
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 78 IFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137
IF + +E+ DYY IK PMD+ KI + YQ + D +M NA +N +
Sbjct: 41 IFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPE 100
Query: 138 TVYYRQAHAMKELANKLFRTLKND 161
++ Y+ A + ++ + R L+ D
Sbjct: 101 SLIYKDALVLHKVLLETRRDLEGD 124
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PV TE YY+VI+ PMDL ++E+L Y + F D+ + N +N ++
Sbjct: 36 FMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPES 95
Query: 139 VYYRQAHAMKEL 150
YY+ A+ +++
Sbjct: 96 EYYKCANILEKF 107
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F +PV TE YY+VI+ PMDL ++E+L Y + F D+ + N +N ++
Sbjct: 34 FMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPES 93
Query: 139 VYYRQAHAMKEL 150
YY+ A+ +++
Sbjct: 94 EYYKCANILEKF 105
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F + VD E+ +YY+++ PM LS + + L G Y + DF D+ L+ +NA FN
Sbjct: 219 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 278
Query: 139 VYYRQAHAMKELANKLFR 156
+ Y+ A + N L +
Sbjct: 279 LIYKDATTLTNYFNYLIQ 296
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 79 FAKPVD--GTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD + DY +IKHPMD+S I KL Y+ +F D+ LM N +N
Sbjct: 25 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 84
Query: 137 D 137
D
Sbjct: 85 D 85
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNE---GSYQTLGDFEHDIYLMLKNAMHFN 134
F +PV + + +YYK+IK PMDLS + +KL + YQ DF D+ L+ KN FN
Sbjct: 102 FQEPVPAS-IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFN 159
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 90 DYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKE 149
DYY+ IK P+ L +I KL Y+TL E D+ LM +NA +N ++ Y++ +++
Sbjct: 55 DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQ 114
Query: 150 L 150
+
Sbjct: 115 V 115
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 78 IFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137
IF + +E+ DYY IK PMD+ KI + YQ + D +M NA +N +
Sbjct: 41 IFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPE 100
Query: 138 TVYYRQAHAM 147
++ Y+ A +
Sbjct: 101 SLIYKDALVL 110
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 90 DYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKE 149
DYYK+I PMDL I + Y D+ LM +NA H+N + Y AH +++
Sbjct: 63 DYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEK 122
Query: 150 LANKLFRTLKNDPENFEAAC 169
L + + L P++ + A
Sbjct: 123 LLKEKRKELGPLPDDDDMAS 142
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F PVD + +YY V+K+PMDL I K++ Y+ +F D+ LM N +N
Sbjct: 38 FYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPP 97
Query: 137 DTVYYRQAHAMKELANKLFRTLKNDP 162
D A ++++ F + ++P
Sbjct: 98 DHEVVAMARTLQDVFELHFAKIPDEP 123
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F + VD E+ +YY+++ P LS + + L G Y + DF D L+ +NA FN
Sbjct: 184 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 243
Query: 139 VYYRQAHAMKELANKLFR 156
+ Y+ A + N L +
Sbjct: 244 LIYKDATTLTNYFNYLIQ 261
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138
F + VD E+ +YY+++ P LS + + L G Y + DF D L+ +NA FN
Sbjct: 178 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 237
Query: 139 VYYRQAHAMKELANKLFR 156
+ Y+ A + N L +
Sbjct: 238 LIYKDATTLTNYFNYLIQ 255
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNA 130
F +PVD E DY +I PMD + E L+ G+Y + +F DI L+ NA
Sbjct: 31 FRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNA 82
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 78 IFAKPVDGTE--VEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNA 135
IF K VD + DYY VIK+P S I KL +G Y +F D+ L+ N +N
Sbjct: 41 IFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNT 100
Query: 136 SDTV 139
S++V
Sbjct: 101 SNSV 104
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD E DY +I PMD + + E L G+Y++ + D+ L+ N+ + S
Sbjct: 42 FRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPS 99
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 79 FAKPVD--GTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F KPVD + DY +IKHP D S I KL Y+ +F D+ L N +N
Sbjct: 31 FYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYNPP 90
Query: 137 D 137
D
Sbjct: 91 D 91
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 79 FAKPVDGTEVE--DYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD +++ DYY +IK+PMDL+ I ++L Y + D M N +N
Sbjct: 34 FQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKP 93
Query: 137 DTVYYRQAHAMKEL 150
A A+++L
Sbjct: 94 GDDIVLMAQALEKL 107
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 79 FAKPVDGTEVE--DYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD +++ DYY +IK PMDL+ I ++L Y+ + D M N +N +
Sbjct: 35 FQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKT 94
Query: 137 DTVYYRQAHAMKEL 150
A A+++L
Sbjct: 95 GDDIVVMAQALEKL 108
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN-A 135
F +PVD ++ DY+K+IK PMD+ I +L Y + D M N +N
Sbjct: 53 FRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKP 112
Query: 136 SDTVYYRQAHAMKELANKLFRTLKNDPENFEAACSMRGRRRNKAISGPLNSH 187
+D + M + K+F + SM + ++ P NSH
Sbjct: 113 TDDIV-----LMAQTLEKIF---------LQKVASMPQEEQELVVTIPKNSH 150
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD ++ DYYK+IK PMD+ I ++L Y + D M N +N
Sbjct: 46 FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKP 105
Query: 137 DTVYYRQAHAMKEL 150
A A+++L
Sbjct: 106 GDDIVLMAEALEKL 119
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD ++ DYYK+IK PMD+ I ++L Y + D M N +N
Sbjct: 42 FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKP 101
Query: 137 DTVYYRQAHAMKEL 150
A A+++L
Sbjct: 102 GDDIVLMAEALEKL 115
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD ++ DYYK+IK PMD+ I ++L Y + D M N +N
Sbjct: 62 FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKP 121
Query: 137 DTVYYRQAHAMKEL 150
A A+++L
Sbjct: 122 GDDIVLMAEALEKL 135
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD ++ DYYK+IK PMD+ I ++L Y + D M N +N
Sbjct: 42 FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKP 101
Query: 137 DTVYYRQAHAMKEL 150
A A+++L
Sbjct: 102 GDDIVLMAEALEKL 115
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 90 DYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKE 149
DYY+V+ P+DL KI +KL Y + D L+ NA + D+ Y+ A + +
Sbjct: 43 DYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWD 102
Query: 150 L 150
L
Sbjct: 103 L 103
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN-- 134
F +PVD ++ DY+K+IK+PMD+ I ++L Y + + D M N +N
Sbjct: 38 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 97
Query: 135 ASDTVYYRQA 144
D V QA
Sbjct: 98 TDDIVLMAQA 107
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN-- 134
F +PVD ++ DY+K+IK+PMD+ I ++L Y + + D M N +N
Sbjct: 40 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 99
Query: 135 ASDTVYYRQA 144
D V QA
Sbjct: 100 TDDIVLMAQA 109
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN-- 134
F +PVD ++ DY+K+IK+PMD+ I ++L Y + + D M N +N
Sbjct: 42 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 101
Query: 135 ASDTVYYRQA 144
D V QA
Sbjct: 102 TDDIVLMAQA 111
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136
F +PVD ++ DY+K+IK PMD+ I +L Y + D M N +N
Sbjct: 53 FRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKP 112
Query: 137 -----------DTVYYRQAHAMKELANKLFRTLKN 160
+ ++ ++ +M + +L T+ N
Sbjct: 113 TDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPN 147
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 90 DYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133
DYY+ I P+DL I +++ G Y+T+ F+ D+ + +NA +
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKY 90
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134
F +PVD ++ DY+K+IK P D I +L Y + D N +N
Sbjct: 33 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYN 90
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 79 FAKPVDGTEV--EDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134
F +PVD ++ DY+K+IK P D I +L Y + D N +N
Sbjct: 27 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYN 84
>pdb|3LQH|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo In The Free Form
pdb|3LQI|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|C Chain C, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQJ|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
pdb|3LQJ|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
Length = 183
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 96 KHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMH 132
+ P+DL + K+++G+Y ++ +F DI +++ A++
Sbjct: 102 QQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAIN 138
>pdb|2PTF|A Chain A, Crystal Structure Of Protein Mth_863 From Methanobacterium
Thermoautotrophicum Bound To Fmn
pdb|2PTF|B Chain B, Crystal Structure Of Protein Mth_863 From Methanobacterium
Thermoautotrophicum Bound To Fmn
Length = 233
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 115 TLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKELANK 153
TLGD E D++ ++ +H +D + + ++K+L +
Sbjct: 99 TLGDLEEDMFSHYRDFLHLRGADAFFTAEVVSVKKLVKR 137
>pdb|3JPZ|A Chain A, Crystal Structure Of Lombricine Kinase
pdb|3JPZ|B Chain B, Crystal Structure Of Lombricine Kinase
pdb|3JQ3|A Chain A, Crystal Structure Of Lombricine Kinase, Complexed With
Substrate Adp
Length = 366
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 4 GQGTRKSSDHKLARKRKTRPVHDLVDNDVEIQVRKTGDGDHHTNAVD 50
G G R S +L + K D+V V +Q++K G G HT AVD
Sbjct: 275 GTGLRASVHVQLHQLSKHPKFEDIV---VALQLQKRGTGGEHTAAVD 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,653,145
Number of Sequences: 62578
Number of extensions: 205132
Number of successful extensions: 547
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 89
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)