Query 048123
Match_columns 202
No_of_seqs 198 out of 1309
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05505 Bromo_WSTF_like Bromod 100.0 2.4E-30 5.2E-35 186.1 10.9 95 60-154 2-96 (97)
2 cd05496 Bromo_WDR9_II Bromodom 100.0 3.4E-30 7.4E-35 191.5 11.9 107 57-163 4-111 (119)
3 cd05497 Bromo_Brdt_I_like Brom 100.0 6.1E-30 1.3E-34 187.1 12.3 100 59-158 6-107 (107)
4 cd05495 Bromo_cbp_like Bromodo 100.0 1.7E-29 3.7E-34 185.1 13.2 102 58-159 3-107 (108)
5 cd05504 Bromo_Acf1_like Bromod 100.0 2.3E-29 5E-34 186.3 13.4 105 54-158 8-112 (115)
6 cd05503 Bromo_BAZ2A_B_like Bro 100.0 1.5E-29 3.4E-34 182.1 11.4 96 60-155 2-97 (97)
7 cd05507 Bromo_brd8_like Bromod 100.0 2.8E-29 6E-34 182.9 12.4 102 57-158 2-103 (104)
8 cd05509 Bromo_gcn5_like Bromod 100.0 2.5E-29 5.5E-34 182.2 12.0 101 58-158 1-101 (101)
9 cd05508 Bromo_RACK7 Bromodomai 100.0 3.2E-29 6.9E-34 180.7 11.6 95 58-153 3-97 (99)
10 cd05513 Bromo_brd7_like Bromod 100.0 4.2E-29 9.1E-34 179.8 11.0 96 58-153 1-96 (98)
11 cd05510 Bromo_SPT7_like Bromod 100.0 7.5E-29 1.6E-33 182.6 12.4 104 56-159 5-110 (112)
12 cd05512 Bromo_brd1_like Bromod 100.0 4.7E-29 1E-33 179.7 10.2 96 58-153 1-96 (98)
13 cd05502 Bromo_tif1_like Bromod 100.0 2.3E-28 4.9E-33 179.6 13.1 101 58-159 4-107 (109)
14 cd05511 Bromo_TFIID Bromodomai 100.0 1.4E-28 2.9E-33 181.5 11.5 108 60-167 2-109 (112)
15 cd05499 Bromo_BDF1_2_II Bromod 100.0 3.6E-28 7.9E-33 176.5 11.1 96 60-155 2-102 (102)
16 cd05501 Bromo_SP100C_like Brom 100.0 8.3E-28 1.8E-32 173.5 12.7 98 59-159 3-100 (102)
17 cd05506 Bromo_plant1 Bromodoma 100.0 5E-28 1.1E-32 174.8 11.2 96 60-155 2-99 (99)
18 cd05498 Bromo_Brdt_II_like Bro 100.0 5E-28 1.1E-32 175.7 11.0 96 60-155 2-102 (102)
19 cd05516 Bromo_SNF2L2 Bromodoma 100.0 1E-27 2.2E-32 175.5 11.7 99 59-157 2-106 (107)
20 cd05528 Bromo_AAA Bromodomain; 100.0 1.6E-27 3.4E-32 175.6 12.3 101 59-159 4-108 (112)
21 cd05500 Bromo_BDF1_2_I Bromodo 100.0 1.6E-27 3.4E-32 173.4 11.8 96 59-154 5-102 (103)
22 KOG1474 Transcription initiati 99.9 3E-27 6.4E-32 219.0 13.1 118 51-168 215-334 (640)
23 cd05524 Bromo_polybromo_I Brom 99.9 7E-27 1.5E-31 172.5 12.2 102 60-161 4-111 (113)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 4.7E-27 1E-31 170.9 10.9 96 60-155 2-103 (103)
25 smart00297 BROMO bromo domain. 99.9 2.8E-26 6E-31 167.3 12.3 102 57-158 6-107 (107)
26 cd05515 Bromo_polybromo_V Brom 99.9 2.4E-26 5.3E-31 167.7 11.3 96 61-156 3-104 (105)
27 cd05520 Bromo_polybromo_III Br 99.9 2.9E-26 6.2E-31 166.6 11.4 98 57-154 3-102 (103)
28 cd05529 Bromo_WDR9_I_like Brom 99.9 7E-26 1.5E-30 170.7 12.9 103 55-157 21-127 (128)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 6E-26 1.3E-30 165.7 11.5 96 59-154 3-104 (106)
30 cd05517 Bromo_polybromo_II Bro 99.9 4.9E-26 1.1E-30 165.4 11.0 94 60-153 2-101 (103)
31 cd05518 Bromo_polybromo_IV Bro 99.9 5.4E-26 1.2E-30 165.1 10.9 82 72-153 20-101 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.9 1.2E-25 2.6E-30 163.7 11.2 96 59-154 2-103 (104)
33 PF00439 Bromodomain: Bromodom 99.9 8.6E-25 1.9E-29 152.8 10.3 84 63-146 1-84 (84)
34 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.2E-24 4.8E-29 157.3 11.4 94 60-155 3-102 (106)
35 cd04369 Bromodomain Bromodomai 99.9 4.2E-24 9E-29 152.3 10.6 95 60-154 2-98 (99)
36 cd05492 Bromo_ZMYND11 Bromodom 99.9 1E-23 2.3E-28 154.1 12.2 99 61-159 3-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.9 1E-20 2.2E-25 138.1 11.6 99 59-159 4-108 (110)
38 COG5076 Transcription factor i 99.8 5E-19 1.1E-23 155.3 11.9 91 73-163 163-253 (371)
39 KOG1245 Chromatin remodeling c 99.8 2.2E-19 4.8E-24 176.5 8.4 95 63-158 1306-1400(1404)
40 KOG1472 Histone acetyltransfer 99.6 2.5E-16 5.5E-21 145.1 6.3 102 57-158 605-706 (720)
41 KOG0955 PHD finger protein BR1 99.5 6.6E-14 1.4E-18 134.1 8.4 113 54-166 561-673 (1051)
42 cd05491 Bromo_TBP7_like Bromod 99.3 2.3E-12 4.9E-17 94.7 6.0 44 95-138 61-104 (119)
43 cd05494 Bromodomain_1 Bromodom 99.3 6.2E-13 1.3E-17 98.2 3.1 78 60-137 5-91 (114)
44 KOG0008 Transcription initiati 99.3 4.5E-12 9.8E-17 122.0 5.7 95 62-156 1386-1480(1563)
45 KOG1827 Chromatin remodeling c 99.2 3.2E-11 6.9E-16 110.2 8.4 107 51-157 45-157 (629)
46 KOG0386 Chromatin remodeling c 99.2 6.5E-11 1.4E-15 111.9 7.7 103 61-163 1027-1135(1157)
47 KOG0008 Transcription initiati 99.1 1.4E-10 3E-15 112.0 8.6 100 56-155 1259-1358(1563)
48 KOG1472 Histone acetyltransfer 98.9 1.8E-09 3.8E-14 100.4 7.6 68 72-139 300-367 (720)
49 KOG1828 IRF-2-binding protein 98.8 4.4E-10 9.6E-15 96.8 -0.3 97 58-154 19-115 (418)
50 KOG1828 IRF-2-binding protein 98.7 9.2E-09 2E-13 88.8 3.7 95 54-149 204-298 (418)
51 KOG1474 Transcription initiati 98.5 2.3E-08 5E-13 93.5 0.2 92 70-161 4-97 (640)
52 COG5076 Transcription factor i 97.7 1.3E-05 2.7E-10 70.7 0.7 96 67-162 272-367 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 97.4 0.00039 8.5E-09 52.3 5.5 61 98-158 59-119 (131)
54 KOG0644 Uncharacterized conser 94.7 0.015 3.3E-07 55.5 1.7 60 94-153 1049-1108(1113)
55 KOG0732 AAA+-type ATPase conta 94.4 0.066 1.4E-06 52.8 5.2 96 76-171 533-644 (1080)
56 KOG1827 Chromatin remodeling c 82.7 0.14 3E-06 47.9 -2.9 76 76-151 213-288 (629)
57 KOG0644 Uncharacterized conser 78.8 0.39 8.4E-06 46.3 -1.4 72 79-151 86-187 (1113)
58 TIGR02606 antidote_CC2985 puta 77.1 4.5 9.7E-05 26.9 3.7 28 102-129 12-39 (69)
59 PF14372 DUF4413: Domain of un 72.8 20 0.00044 25.4 6.5 48 111-158 4-51 (101)
60 PF03693 RHH_2: Uncharacterise 66.9 9.4 0.0002 26.2 3.5 27 102-128 15-41 (80)
61 KOG0732 AAA+-type ATPase conta 43.1 6.1 0.00013 39.5 -0.8 60 79-138 789-850 (1080)
62 PF14056 DUF4250: Domain of un 33.2 73 0.0016 20.3 3.3 24 99-123 7-30 (55)
63 PRK10991 fucI L-fucose isomera 32.9 79 0.0017 29.8 4.7 78 80-158 187-275 (588)
64 COG3609 Predicted transcriptio 25.7 1.4E+02 0.003 20.7 4.0 31 101-131 14-44 (89)
65 PF07882 Fucose_iso_N2: L-fuco 25.6 23 0.00049 28.2 -0.0 55 83-138 18-72 (181)
66 COG3355 Predicted transcriptio 24.1 80 0.0017 23.7 2.6 36 91-130 83-118 (126)
67 PF08134 cIII: cIII protein fa 23.9 1.4E+02 0.003 17.7 3.1 27 132-158 14-40 (44)
68 PF10491 Nrf1_DNA-bind: NLS-bi 22.0 62 0.0013 26.4 1.8 22 117-138 185-206 (214)
69 PF11860 DUF3380: Protein of u 20.8 2.6E+02 0.0057 22.1 5.1 18 107-124 100-117 (175)
70 PF11705 RNA_pol_3_Rpc31: DNA- 20.6 3.8E+02 0.0082 21.8 6.3 11 1-12 1-11 (233)
No 1
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=2.4e-30 Score=186.06 Aligned_cols=95 Identities=26% Similarity=0.412 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCH
Q 048123 60 RKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTV 139 (202)
Q Consensus 60 ~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~ 139 (202)
.+.|..||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.|+++|..||.|||.||+.||+++|.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 048123 140 YYRQAHAMKELANKL 154 (202)
Q Consensus 140 ~~~~A~~L~~~~~~~ 154 (202)
++..|..|++.|.++
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=3.4e-30 Score=191.48 Aligned_cols=107 Identities=22% Similarity=0.378 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 57 MPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
..|.+.|..||+.|++++.+++|..||++..+|||+++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~ 83 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPN 83 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHhhCCCc
Q 048123 137 -DTVYYRQAHAMKELANKLFRTLKNDPE 163 (202)
Q Consensus 137 -~s~~~~~A~~L~~~~~~~~~~~~~~~~ 163 (202)
+|.+|.+|..|+..|++.+..+.....
T Consensus 84 ~~s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 84 KRSRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999865443
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=6.1e-30 Score=187.14 Aligned_cols=100 Identities=25% Similarity=0.395 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 59 ERKMLDLLLDRLKRRDSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 59 ~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
+.-++..||+.|.+++.+++|..|||+. .+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||++
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKP 85 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4556789999999999999999999986 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 048123 137 DTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 137 ~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
+|.++.+|..|+..|++.++++
T Consensus 86 ~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 86 GDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988753
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.7e-29 Score=185.09 Aligned_cols=102 Identities=29% Similarity=0.524 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcC-CCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 58 PERKMLDLLLDRLKRR-DSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~-~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
.+++.|..++++|.++ +.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|..||+|||.||+.||
T Consensus 3 ~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (108)
T cd05495 3 ELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYN 82 (108)
T ss_pred HHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4678999999999999 9999999999987 699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 135 ASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
+++|.++.+|..|+..|++.++.+.
T Consensus 83 ~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 83 RKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 5
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.3e-29 Score=186.35 Aligned_cols=105 Identities=33% Similarity=0.511 Sum_probs=100.8
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
.....+...|..||+.|..++.+++|..||+...+|+||++|++||||++|++||+++.|.|+++|..||.|||+||+.|
T Consensus 8 ~~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 8 HHGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLY 87 (115)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 048123 134 NASDTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
|+++|.++.+|..|+..|++.++++
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999886
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.5e-29 Score=182.07 Aligned_cols=96 Identities=34% Similarity=0.589 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCH
Q 048123 60 RKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTV 139 (202)
Q Consensus 60 ~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~ 139 (202)
...|..||+.|..++.+++|..||++..+|+|+++|++||||++|++||+++.|.|+++|..||.|||.||+.||+++|.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 048123 140 YYRQAHAMKELANKLF 155 (202)
Q Consensus 140 ~~~~A~~L~~~~~~~~ 155 (202)
++.+|..|++.|++.|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 7
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.8e-29 Score=182.90 Aligned_cols=102 Identities=28% Similarity=0.457 Sum_probs=97.3
Q ss_pred cHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 57 MPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
..|++.|..|++.|..++.+++|..||+...+|+|+++|++||||++|++||+++.|.++++|..||.|||+||..||++
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 81 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSS 81 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 048123 137 DTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 137 ~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
++.++.+|..|+..+.+.+..+
T Consensus 82 ~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 82 DHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999988877653
No 8
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.5e-29 Score=182.23 Aligned_cols=101 Identities=42% Similarity=0.647 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 048123 58 PERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 137 (202)
|+...|..|++.|.+++.+++|..||++..+|+|+++|++||||++|++||.++.|.|+++|..||+|||+||+.||+++
T Consensus 1 ~~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 1 PLYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred ChHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 048123 138 TVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 138 s~~~~~A~~L~~~~~~~~~~~ 158 (202)
|.++.+|..|+..|+++++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998864
No 9
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=3.2e-29 Score=180.71 Aligned_cols=95 Identities=28% Similarity=0.480 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 048123 58 PERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 137 (202)
.+..+|..+++.|. ++.+++|..||++..+|||+.+|++||||+||++||++|.|.++++|..||+|||.||+.||+++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35778999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 048123 138 TVYYRQAHAMKELANK 153 (202)
Q Consensus 138 s~~~~~A~~L~~~~~~ 153 (202)
|.++.+|..|.+.|+.
T Consensus 82 s~i~~~A~~l~~~~~~ 97 (99)
T cd05508 82 HKLTQAAKAIVKICEQ 97 (99)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988865
No 10
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=4.2e-29 Score=179.78 Aligned_cols=96 Identities=39% Similarity=0.681 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 048123 58 PERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 137 (202)
|+...|..|++.|+.++.+++|..||+...+|+|+++|++||||+||++||+++.|.|+++|..||+|||.||+.||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 048123 138 TVYYRQAHAMKELANK 153 (202)
Q Consensus 138 s~~~~~A~~L~~~~~~ 153 (202)
|.+|++|..|.....+
T Consensus 81 s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 81 TIYYKAAKKLLHSGMK 96 (98)
T ss_pred CHHHHHHHHHHHhhhh
Confidence 9999999999776543
No 11
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=7.5e-29 Score=182.58 Aligned_cols=104 Identities=31% Similarity=0.492 Sum_probs=98.2
Q ss_pred CcHHHHHHHHHHHHHHcC-CCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 56 AMPERKMLDLLLDRLKRR-DSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 56 ~~~~~~~~~~il~~l~~~-~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
..++.+.|..||+.|+.+ +.+++|..||++..+|+||++|++||||++|++||+++.|.|+++|.+||.|||.||+.||
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN 84 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYN 84 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 456788999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHhh
Q 048123 135 ASDT-VYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 135 ~~~s-~~~~~A~~L~~~~~~~~~~~~ 159 (202)
++++ .++++|..|++.|++++..+.
T Consensus 85 ~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 85 SDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 9866 688999999999999998873
No 12
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=4.7e-29 Score=179.68 Aligned_cols=96 Identities=41% Similarity=0.730 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 048123 58 PERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 137 (202)
|+..+|+.+|++|..++.+++|..||+...+|+|+++|++||||+||++||.++.|.|+++|..||+|||.||+.||+++
T Consensus 1 p~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 048123 138 TVYYRQAHAMKELANK 153 (202)
Q Consensus 138 s~~~~~A~~L~~~~~~ 153 (202)
|.+|++|..|+.....
T Consensus 81 s~~~~~A~~l~~~~~~ 96 (98)
T cd05512 81 TIFYRAAVRLRDQGGA 96 (98)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999886543
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.3e-28 Score=179.58 Aligned_cols=101 Identities=30% Similarity=0.471 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 58 PERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNE---GSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~---~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
.+++.|..||.+|++++.+++|..||++ .+|+|+++|++||||++|++||++ +.|.++++|..||+|||+||..||
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999999 899999999999999999999998 599999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 135 ASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
+++|.++.+|..|+..|++++.++.
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998874
No 14
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.4e-28 Score=181.46 Aligned_cols=108 Identities=35% Similarity=0.589 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCH
Q 048123 60 RKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTV 139 (202)
Q Consensus 60 ~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~ 139 (202)
..+++.|+++|+.++.+++|..||++..+|+||++|++||||++|++||.++.|.++++|..||+|||+||..||+++|.
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 048123 140 YYRQAHAMKELANKLFRTLKNDPENFEA 167 (202)
Q Consensus 140 ~~~~A~~L~~~~~~~~~~~~~~~~~~~~ 167 (202)
++.+|..|...|.++++++.......+.
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~~~~~~ 109 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKLTQLEK 109 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999776655543
No 15
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.6e-28 Score=176.49 Aligned_cols=96 Identities=34% Similarity=0.608 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcC---CCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 60 RKMLDLLLDRLKRR---DSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 60 ~~~~~~il~~l~~~---~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
.+.|..||+.|++. +.+++|..||++. .+|+||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46899999999984 5689999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 048123 135 ASDTVYYRQAHAMKELANKLF 155 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~~ 155 (202)
+++|.++.+|..|+..|++.|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 16
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=8.3e-28 Score=173.46 Aligned_cols=98 Identities=27% Similarity=0.364 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q 048123 59 ERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138 (202)
Q Consensus 59 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 138 (202)
....|+.||..|..++.+++|..+ +..+||||++|++||||+||++||.++.|.|+++|.+||+|||.||+.||+++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~- 79 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD- 79 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-
Confidence 356799999999999999999763 45899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 048123 139 VYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 139 ~~~~~A~~L~~~~~~~~~~~~ 159 (202)
.++.+|..|+..|++.++.+.
T Consensus 80 ~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 80 DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 17
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=5e-28 Score=174.79 Aligned_cols=96 Identities=29% Similarity=0.503 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 048123 60 RKMLDLLLDRLKRRDSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137 (202)
Q Consensus 60 ~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 137 (202)
.+.|..||+.|++++.+++|..||++. .+|+|+++|++||||++|++||+++.|.++++|..||.+||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 467999999999999999999999976 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 048123 138 TVYYRQAHAMKELANKLF 155 (202)
Q Consensus 138 s~~~~~A~~L~~~~~~~~ 155 (202)
|.++.+|..|+..|++.|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999875
No 18
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=5e-28 Score=175.72 Aligned_cols=96 Identities=31% Similarity=0.488 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcC---CCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 60 RKMLDLLLDRLKRR---DSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 60 ~~~~~~il~~l~~~---~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
.+.|..||+.|+++ +.+++|..||++. .+|+|+++|++||||++|+++|+++.|.|+++|..||+|||+||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 56899999999999 8899999999986 599999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 048123 135 ASDTVYYRQAHAMKELANKLF 155 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~~ 155 (202)
+++|.++.+|..|+..|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 19
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1e-27 Score=175.49 Aligned_cols=99 Identities=23% Similarity=0.501 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHcCCC------cccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Q 048123 59 ERKMLDLLLDRLKRRDS------YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMH 132 (202)
Q Consensus 59 ~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 132 (202)
+.+.|..||+.|..+.. +++|..||+...+||||++|++||||++|++||.+|.|.++++|..||.|||.||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678888888887766 799999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHH
Q 048123 133 FNASDTVYYRQAHAMKELANKLFRT 157 (202)
Q Consensus 133 yN~~~s~~~~~A~~L~~~~~~~~~~ 157 (202)
||+++|.+|.+|..|+..|++.++.
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998865
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.95 E-value=1.6e-27 Score=175.64 Aligned_cols=101 Identities=35% Similarity=0.582 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC-
Q 048123 59 ERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD- 137 (202)
Q Consensus 59 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~- 137 (202)
++..|..|+++|+.++.+++|..||++..+||||++|++||||++|++||+++.|.|+++|..||+|||.||+.||+++
T Consensus 4 lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 83 (112)
T cd05528 4 LRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRD 83 (112)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4667899999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHhh
Q 048123 138 ---TVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 138 ---s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
+.++..|..|++.|.++++...
T Consensus 84 ~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 84 PADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999988753
No 21
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.6e-27 Score=173.41 Aligned_cols=96 Identities=29% Similarity=0.482 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 59 ERKMLDLLLDRLKRRDSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 59 ~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
+.+.|..||+.|++++.+++|..||++. .+|+|+++|++||||++|++||.++.|.++.+|..||+|||+||+.||++
T Consensus 5 ~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 84 (103)
T cd05500 5 QHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGP 84 (103)
T ss_pred HHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999999999999999976 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 048123 137 DTVYYRQAHAMKELANKL 154 (202)
Q Consensus 137 ~s~~~~~A~~L~~~~~~~ 154 (202)
+|.++.+|..|+..|++.
T Consensus 85 ~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 85 EHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 22
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.95 E-value=3e-27 Score=219.03 Aligned_cols=118 Identities=30% Similarity=0.475 Sum_probs=107.8
Q ss_pred CCCcCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCC--ccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048123 51 MSSIIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTE--VEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLK 128 (202)
Q Consensus 51 ~~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~ 128 (202)
........+.+.|..||..|+.|.++|+|..|||+.. +||||+||++||||+||+.||.++.|.++.+|..||+|||.
T Consensus 215 ~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~ 294 (640)
T KOG1474|consen 215 PKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFD 294 (640)
T ss_pred ccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHH
Confidence 3456667788999999999999999999999999975 89999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 048123 129 NAMHFNASDTVYYRQAHAMKELANKLFRTLKNDPENFEAA 168 (202)
Q Consensus 129 Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~ 168 (202)
||++||+++++||.+|..|+.+|+..|..+...++.....
T Consensus 295 Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~ 334 (640)
T KOG1474|consen 295 NCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESA 334 (640)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 9999999999999999999999999999976655544433
No 23
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.95 E-value=7e-27 Score=172.53 Aligned_cols=102 Identities=24% Similarity=0.361 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHc------CCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 60 RKMLDLLLDRLKR------RDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 60 ~~~~~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
.+.|..|++.|.+ ++.+.+|..+|+...+|+||++|++||||++|++||.++.|.|+++|..||.|||.||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5679999999986 4445789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 134 NASDTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
|+++|.++.+|..|+..|++.++++...
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999888643
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.7e-27 Score=170.94 Aligned_cols=96 Identities=25% Similarity=0.469 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHH------cCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 60 RKMLDLLLDRLK------RRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 60 ~~~~~~il~~l~------~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
++.|..|++.|. .++.+++|..||+...+|+||++|++||||++|++||+++.|.|+.+|..||+|||.||+.|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 567888888888 45568999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 048123 134 NASDTVYYRQAHAMKELANKLF 155 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~ 155 (202)
|+++|.++.+|..|+..|++++
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998763
No 25
>smart00297 BROMO bromo domain.
Probab=99.94 E-value=2.8e-26 Score=167.34 Aligned_cols=102 Identities=37% Similarity=0.642 Sum_probs=97.7
Q ss_pred cHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 57 MPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
..+..+|..|++.+.+++.+++|..||++..+|+|+++|++||||++|++||+++.|.|+.+|..||.+||.||+.||++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 048123 137 DTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 137 ~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
++.++.+|..|...|++.++++
T Consensus 86 ~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 86 DSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999998763
No 26
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=2.4e-26 Score=167.66 Aligned_cols=96 Identities=33% Similarity=0.531 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHc------CCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 61 KMLDLLLDRLKR------RDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 61 ~~~~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
+.|..|++.|.. ++.+++|..||+...+|+||++|++||||++|++||.++.|.++++|..||.|||.||+.||
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN 82 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYN 82 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457777777755 45578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 048123 135 ASDTVYYRQAHAMKELANKLFR 156 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~~~ 156 (202)
+++|.++.+|..|+..|.+..+
T Consensus 83 ~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 83 EPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999887643
No 27
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=2.9e-26 Score=166.64 Aligned_cols=98 Identities=29% Similarity=0.494 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHHHH--cCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 57 MPERKMLDLLLDRLK--RRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 57 ~~~~~~~~~il~~l~--~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
.|+..++..|....- .++.+++|..||+...+|+||++|++||||++|++||+++.|.++.+|+.||+|||.||+.||
T Consensus 3 ~~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 3 NPLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred chHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 355555555554332 235678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 048123 135 ASDTVYYRQAHAMKELANKL 154 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~ 154 (202)
+++|.++.+|..|+..|++.
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999763
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7e-26 Score=170.70 Aligned_cols=103 Identities=29% Similarity=0.449 Sum_probs=95.8
Q ss_pred CCcHHHHHHHHHHHHHH---cCCCcccccCCCCcC-CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 048123 55 IAMPERKMLDLLLDRLK---RRDSYKIFAKPVDGT-EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNA 130 (202)
Q Consensus 55 ~~~~~~~~~~~il~~l~---~~~~~~~F~~pv~~~-~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 130 (202)
....+...|..++.+|. .++.+++|..||+.. .+|+||++|++||||++|++||+++.|.++++|..||+|||.||
T Consensus 21 ~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na 100 (128)
T cd05529 21 IRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNA 100 (128)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34445677888888898 899999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 048123 131 MHFNASDTVYYRQAHAMKELANKLFRT 157 (202)
Q Consensus 131 ~~yN~~~s~~~~~A~~L~~~~~~~~~~ 157 (202)
+.||+++|.++..|..|+..|.+++..
T Consensus 101 ~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 101 ETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988753
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6e-26 Score=165.66 Aligned_cols=96 Identities=21% Similarity=0.323 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcC------CCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Q 048123 59 ERKMLDLLLDRLKRR------DSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMH 132 (202)
Q Consensus 59 ~~~~~~~il~~l~~~------~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 132 (202)
+...|..|++.|... ..+++|..+|+...+|+||++|++||||++|++||.++.|.|+++|..||.|||.||..
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345566666666553 44689999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHH
Q 048123 133 FNASDTVYYRQAHAMKELANKL 154 (202)
Q Consensus 133 yN~~~s~~~~~A~~L~~~~~~~ 154 (202)
||+++|.++.+|..|+..|++.
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999763
No 30
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=4.9e-26 Score=165.39 Aligned_cols=94 Identities=33% Similarity=0.592 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcC------CCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 60 RKMLDLLLDRLKRR------DSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 60 ~~~~~~il~~l~~~------~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
++.|..|++.|..+ +.+++|..+|+...+|+||++|++||||++|++||.++.|.++.+|..||.|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45677777777664 346899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 048123 134 NASDTVYYRQAHAMKELANK 153 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~ 153 (202)
|+++|.++.+|..|+..|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=5.4e-26 Score=165.11 Aligned_cols=82 Identities=27% Similarity=0.535 Sum_probs=78.5
Q ss_pred cCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048123 72 RRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKELA 151 (202)
Q Consensus 72 ~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~~ 151 (202)
.+..+.+|..+|+...+||||++|++||||++|+.+|.++.|.|+++|..||.|||.||+.||+++|.++.+|..|+..|
T Consensus 20 gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 99 (103)
T cd05518 20 GRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVL 99 (103)
T ss_pred CCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HH
Q 048123 152 NK 153 (202)
Q Consensus 152 ~~ 153 (202)
++
T Consensus 100 ~~ 101 (103)
T cd05518 100 KE 101 (103)
T ss_pred Hh
Confidence 75
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.2e-25 Score=163.73 Aligned_cols=96 Identities=27% Similarity=0.455 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHc------CCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Q 048123 59 ERKMLDLLLDRLKR------RDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMH 132 (202)
Q Consensus 59 ~~~~~~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 132 (202)
....+..|++.|.+ ++.+++|..+|+...+|+||++|++||||++|++||.++.|.++++|..||.|||.||+.
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 45566777777755 467899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHH
Q 048123 133 FNASDTVYYRQAHAMKELANKL 154 (202)
Q Consensus 133 yN~~~s~~~~~A~~L~~~~~~~ 154 (202)
||+++|.++.+|..|+..|+++
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 33
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.92 E-value=8.6e-25 Score=152.77 Aligned_cols=84 Identities=39% Similarity=0.717 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 048123 63 LDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYR 142 (202)
Q Consensus 63 ~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~ 142 (202)
|..||+.|.+++.+++|..||+...+|+|+++|++||||.+|++||++|.|.++.+|..||++||.||+.||+++|.++.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 048123 143 QAHA 146 (202)
Q Consensus 143 ~A~~ 146 (202)
+|.+
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9964
No 34
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.2e-24 Score=157.32 Aligned_cols=94 Identities=27% Similarity=0.435 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCC------cccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 60 RKMLDLLLDRLKRRDS------YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 60 ~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
.+.|..+++.|..... +.+|..+|+...+||||++|++||||++|++||++ |.++++|..||.|||.||..|
T Consensus 3 ~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~y 80 (106)
T cd05521 3 SKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 4567778887766444 46999999999999999999999999999999998 999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 048123 134 NASDTVYYRQAHAMKELANKLF 155 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~ 155 (202)
|+++|.++.+|..|+..|.+++
T Consensus 81 N~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 81 NTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred cCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998765
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.91 E-value=4.2e-24 Score=152.26 Aligned_cols=95 Identities=44% Similarity=0.738 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcC--CCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 048123 60 RKMLDLLLDRLKRR--DSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137 (202)
Q Consensus 60 ~~~~~~il~~l~~~--~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 137 (202)
...|..+++.|..+ +.+++|..||++..+|+|+++|++||||.+|+.||.++.|.++.+|..||.+||.||+.||+++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35788999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 048123 138 TVYYRQAHAMKELANKL 154 (202)
Q Consensus 138 s~~~~~A~~L~~~~~~~ 154 (202)
+.++.+|..|+..|++.
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999998875
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1e-23 Score=154.07 Aligned_cols=99 Identities=23% Similarity=0.367 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHc-CCCcccccCCCCc---C--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 61 KMLDLLLDRLKR-RDSYKIFAKPVDG---T--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 61 ~~~~~il~~l~~-~~~~~~F~~pv~~---~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
.+|..++..+++ .+.+.+|..||.+ . .+|+|+.+|++||||+||++||+++.|.++++|..||.|||+||..||
T Consensus 3 ~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yN 82 (109)
T cd05492 3 CLLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFH 82 (109)
T ss_pred hhHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467788888888 7778999999963 2 499999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 135 ASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
+++|.++.+|..|...+..-+.++.
T Consensus 83 g~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 83 GADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888888774
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=1e-20 Score=138.09 Aligned_cols=99 Identities=20% Similarity=0.329 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCC------cccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Q 048123 59 ERKMLDLLLDRLKRRDS------YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMH 132 (202)
Q Consensus 59 ~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 132 (202)
.+.++..|+..|+++.. +.+|.+.|+ ..|+|+.+|+.||||++|+.||.+|.|.++++|..||.+||.||+.
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~ 81 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARR 81 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHH
Confidence 46778888888887653 579999887 4577789999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 133 FNASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 133 yN~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
||.++|.+|.+|..|+..|.+..+++.
T Consensus 82 yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 82 LSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred hCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888874
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.80 E-value=5e-19 Score=155.30 Aligned_cols=91 Identities=32% Similarity=0.524 Sum_probs=85.2
Q ss_pred CCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 048123 73 RDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKELAN 152 (202)
Q Consensus 73 ~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~~~ 152 (202)
.....+|..+|+...+|+||.+|+.||||.+|+++|+++.|.++++|..|+.|||.||..||++++.++.+|..|+..|.
T Consensus 163 ~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~ 242 (371)
T COG5076 163 RFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFL 242 (371)
T ss_pred cccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHH
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCc
Q 048123 153 KLFRTLKNDPE 163 (202)
Q Consensus 153 ~~~~~~~~~~~ 163 (202)
.++..+.....
T Consensus 243 ~~i~~~~~~~~ 253 (371)
T COG5076 243 KLIEEIPEEML 253 (371)
T ss_pred HHHHhccccch
Confidence 99997755433
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.78 E-value=2.2e-19 Score=176.49 Aligned_cols=95 Identities=34% Similarity=0.546 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 048123 63 LDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYR 142 (202)
Q Consensus 63 ~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~ 142 (202)
|..||..|..|+.+|||+.||++..+|+||+||++||||.||+.++..|.|.++++|..||.|||.||..||.+ |.+++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHh
Q 048123 143 QAHAMKELANKLFRTL 158 (202)
Q Consensus 143 ~A~~L~~~~~~~~~~~ 158 (202)
++..|..+|++.|+..
T Consensus 1385 ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hcchHHHHHHHHHHhh
Confidence 9999999999977654
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.63 E-value=2.5e-16 Score=145.15 Aligned_cols=102 Identities=33% Similarity=0.528 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 57 MPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
-.....+..+|+.|..|..+|+|.+||+..++||||.+|.+||||.||+.+|.++.|..+..|+.|+.+||.||+.||+.
T Consensus 605 ~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~ 684 (720)
T KOG1472|consen 605 GKLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGS 684 (720)
T ss_pred chhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCc
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 048123 137 DTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 137 ~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
++..++.|..|+..|...+.+.
T Consensus 685 ~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 685 DTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred cchheecccchhhhhcchhhhh
Confidence 9999999999999998877765
No 41
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.49 E-value=6.6e-14 Score=134.08 Aligned_cols=113 Identities=44% Similarity=0.750 Sum_probs=107.5
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
....|...+|+.++..|...+...+|..||++.++|||.++|++||||.+|+.+++++.|.++++|..|+.+|+.||+.|
T Consensus 561 ~~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~y 640 (1051)
T KOG0955|consen 561 LGLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEY 640 (1051)
T ss_pred ccCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHh
Confidence 35668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhCCCchHH
Q 048123 134 NASDTVYYRQAHAMKELANKLFRTLKNDPENFE 166 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~ 166 (202)
|..++.+|.+|..+.+...+.+...+.+++...
T Consensus 641 n~~dtv~~r~av~~~e~~~~~~~~arke~e~~~ 673 (1051)
T KOG0955|consen 641 NAKDTVYYRAAVRLRELIKKDFRNARKEPESEG 673 (1051)
T ss_pred hccCeehHhhhHHHHhhhhhHHHhcccchhhhc
Confidence 999999999999999999999998888777665
No 42
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.33 E-value=2.3e-12 Score=94.66 Aligned_cols=44 Identities=32% Similarity=0.419 Sum_probs=41.5
Q ss_pred cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q 048123 95 IKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138 (202)
Q Consensus 95 I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 138 (202)
+-.||||+||++||.+|.|.++.+|+.||+|||.||..||.++.
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 45689999999999999999999999999999999999999865
No 43
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.33 E-value=6.2e-13 Score=98.22 Aligned_cols=78 Identities=21% Similarity=0.152 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCc--CCccchHhhcCCCCCHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHHH
Q 048123 60 RKMLDLLLDRLKRRDSYKIFAKPVDG--TEVEDYYKVIKHPMDLSKITEKLNEGS-------YQTLGDFEHDIYLMLKNA 130 (202)
Q Consensus 60 ~~~~~~il~~l~~~~~~~~F~~pv~~--~~~p~Y~~iI~~PmdL~~I~~kl~~~~-------Y~s~~~f~~Dv~li~~Na 130 (202)
...|..+|..+..++.+++|..||++ ..+|||+++|++||||+||+.+|.++. |..-..+.+++..++.||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 34566666777777799999999999 789999999999999999999999863 444445556666677777
Q ss_pred hhhcCCC
Q 048123 131 MHFNASD 137 (202)
Q Consensus 131 ~~yN~~~ 137 (202)
..+|..+
T Consensus 85 ~~~~~~~ 91 (114)
T cd05494 85 SPSNIYA 91 (114)
T ss_pred Ccccccc
Confidence 6666643
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.27 E-value=4.5e-12 Score=122.00 Aligned_cols=95 Identities=28% Similarity=0.531 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHH
Q 048123 62 MLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYY 141 (202)
Q Consensus 62 ~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~ 141 (202)
++..++.+++.-+.+|+|..||++..+|+||.+|++||||.+|.+++..+.|.+.++|..||++|+.|+..||+.++.+.
T Consensus 1386 ~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~ 1465 (1563)
T KOG0008|consen 1386 ILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYT 1465 (1563)
T ss_pred hhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccccc
Confidence 46677778888899999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHH
Q 048123 142 RQAHAMKELANKLFR 156 (202)
Q Consensus 142 ~~A~~L~~~~~~~~~ 156 (202)
.-|..+-.+....+-
T Consensus 1466 ~k~~k~~ev~~~~~~ 1480 (1563)
T KOG0008|consen 1466 KKARKIGEVGLANLL 1480 (1563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877666655544
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.22 E-value=3.2e-11 Score=110.21 Aligned_cols=107 Identities=27% Similarity=0.452 Sum_probs=93.6
Q ss_pred CCCcCCcHHHHHHHHHHHHHHcCCC------cccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHH
Q 048123 51 MSSIIAMPERKMLDLLLDRLKRRDS------YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIY 124 (202)
Q Consensus 51 ~~~~~~~~~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~ 124 (202)
.+.....+....+..||..+..... ...|.+.++....|+||.+|..||+|..|+.|+..+.|.+.+.|+.|+.
T Consensus 45 d~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~ 124 (629)
T KOG1827|consen 45 DSPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFL 124 (629)
T ss_pred CccccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHH
Confidence 3445566677777777777765433 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 048123 125 LMLKNAMHFNASDTVYYRQAHAMKELANKLFRT 157 (202)
Q Consensus 125 li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~ 157 (202)
+|+.||..||.+++.++++|..|+..|..+..+
T Consensus 125 lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~~~ 157 (629)
T KOG1827|consen 125 LMTENARLYNRPDSLIYKDSGELEKYFISLEDE 157 (629)
T ss_pred HHHHHHHHhcCcchhhhhhhhhhhcchhhhhcc
Confidence 999999999999999999999999999876653
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.16 E-value=6.5e-11 Score=111.90 Aligned_cols=103 Identities=23% Similarity=0.435 Sum_probs=92.3
Q ss_pred HHHHHHHHHHH------cCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 61 KMLDLLLDRLK------RRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 61 ~~~~~il~~l~------~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
..+..|+.... .+..+..|...++...+||||++|+.||++..|.++|.++.|.+..+...||.++|.||++||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 45666666665 345568999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhCCCc
Q 048123 135 ASDTVYYRQAHAMKELANKLFRTLKNDPE 163 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~~~~~~~~~~ 163 (202)
..+|.+|.+|..|..+|.....++..+.+
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~~~~ 1135 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISKEDE 1135 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhcccc
Confidence 99999999999999999999988875433
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.14 E-value=1.4e-10 Score=112.04 Aligned_cols=100 Identities=24% Similarity=0.454 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcC
Q 048123 56 AMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNA 135 (202)
Q Consensus 56 ~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 135 (202)
.+.+.-++..|++++...+...+|..||+...+++||.||..||||.++++.+....|.+-++|+.|+.||+.|..+||+
T Consensus 1259 ~V~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng 1338 (1563)
T KOG0008|consen 1259 SVSLSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNG 1338 (1563)
T ss_pred eeecccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcC
Confidence 34456688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 048123 136 SDTVYYRQAHAMKELANKLF 155 (202)
Q Consensus 136 ~~s~~~~~A~~L~~~~~~~~ 155 (202)
+.+.+...|..+...+-..|
T Consensus 1339 ~~~~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1339 PLASLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred chHHHHHHHHHHHHHHHHhh
Confidence 99998888887766654433
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.95 E-value=1.8e-09 Score=100.37 Aligned_cols=68 Identities=31% Similarity=0.600 Sum_probs=64.6
Q ss_pred cCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCH
Q 048123 72 RRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTV 139 (202)
Q Consensus 72 ~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~ 139 (202)
.+.++++|..+|+...+|+||.+|+.||||.++.+++..+.|.+.++|+.|+.+||.||..||...+.
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~ 367 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESH 367 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccch
Confidence 37789999999999999999999999999999999999999999999999999999999999998653
No 49
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.84 E-value=4.4e-10 Score=96.79 Aligned_cols=97 Identities=25% Similarity=0.332 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 048123 58 PERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 137 (202)
|.....+.++.++-+.+....|..||.....|+|.++|+.|||+.+++.+++.+.|.+..+|..|.+++..||..||..+
T Consensus 19 p~~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~ 98 (418)
T KOG1828|consen 19 PDSGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHP 98 (418)
T ss_pred cchhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCC
Confidence 34456777888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 048123 138 TVYYRQAHAMKELANKL 154 (202)
Q Consensus 138 s~~~~~A~~L~~~~~~~ 154 (202)
+.++..|+.|..+-...
T Consensus 99 Tv~~~aaKrL~~v~~~~ 115 (418)
T KOG1828|consen 99 TVPIVAAKRLCPVRLGM 115 (418)
T ss_pred ccccccccccchhhcch
Confidence 99999999887655433
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.71 E-value=9.2e-09 Score=88.77 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=85.5
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
....+...++.....++...+....|..+|....+|.|..+|++|+++.|++.+..++.|.| -+|..|+.+|+.||++|
T Consensus 204 ~lqtg~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~ 282 (418)
T KOG1828|consen 204 DLQTGGQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTN 282 (418)
T ss_pred hhccccHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhc
Confidence 33444456677778888888899999999999999999999999999999999999999999 89999999999999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 048123 134 NASDTVYYRQAHAMKE 149 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~ 149 (202)
|.++..+|.+|+.+.-
T Consensus 283 gehsk~yyelank~lh 298 (418)
T KOG1828|consen 283 GEHSKSYYELANKQLH 298 (418)
T ss_pred CCcchHHHHHHHhhhh
Confidence 9999999999987655
No 51
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.50 E-value=2.3e-08 Score=93.50 Aligned_cols=92 Identities=25% Similarity=0.445 Sum_probs=82.5
Q ss_pred HHcCCCcccccCCCCcCC--ccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q 048123 70 LKRRDSYKIFAKPVDGTE--VEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAM 147 (202)
Q Consensus 70 l~~~~~~~~F~~pv~~~~--~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L 147 (202)
+..+.++|+|..||+... .|+||.+|.+|||+++|..+++++.|.+..+..+|+..+|.||..||.+.-.+...+..+
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~ 83 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSL 83 (640)
T ss_pred cccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccc
Confidence 456788999999999654 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 048123 148 KELANKLFRTLKND 161 (202)
Q Consensus 148 ~~~~~~~~~~~~~~ 161 (202)
+..|.+........
T Consensus 84 ~~~~~~~~~~~~~~ 97 (640)
T KOG1474|consen 84 EKLFPKKLRSMPSD 97 (640)
T ss_pred hhhccccccccccc
Confidence 99887766655433
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.67 E-value=1.3e-05 Score=70.72 Aligned_cols=96 Identities=31% Similarity=0.505 Sum_probs=86.6
Q ss_pred HHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 048123 67 LDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHA 146 (202)
Q Consensus 67 l~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~ 146 (202)
+.....+..+|+|..+++....|+|+++|..+|++.+.+.++..+.|...+.|..|..++++||..||+....++..+..
T Consensus 272 i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (371)
T COG5076 272 ITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANV 351 (371)
T ss_pred ccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccc
Confidence 33445667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 048123 147 MKELANKLFRTLKNDP 162 (202)
Q Consensus 147 L~~~~~~~~~~~~~~~ 162 (202)
+...+....+......
T Consensus 352 ~~~~~~~~~~~~~~~~ 367 (371)
T COG5076 352 LEDFVIKKTRLIREYP 367 (371)
T ss_pred hhhhHhhhhhhhhccc
Confidence 9999888877665443
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.39 E-value=0.00039 Score=52.27 Aligned_cols=61 Identities=25% Similarity=0.439 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q 048123 98 PMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 98 PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
|-||..|++||++|.|.|+.+|.+||-.|+.-++.=.+...++-++-..+..+|-++++.+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999988776655555555556677777777765
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=94.74 E-value=0.015 Score=55.47 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=49.4
Q ss_pred hcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 048123 94 VIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKELANK 153 (202)
Q Consensus 94 iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 153 (202)
--.-|..|..|..+|++.+|.+.+.|..|+..|..||.+|.+-+.-+-..+..|...|..
T Consensus 1049 ~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1049 RFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 356789999999999999999999999999999999999999876555555555554443
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.066 Score=52.78 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=76.5
Q ss_pred cccccCCCCcCC-----ccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHH--HHHHHHHHHhhhcCCC--------CHH
Q 048123 76 YKIFAKPVDGTE-----VEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEH--DIYLMLKNAMHFNASD--------TVY 140 (202)
Q Consensus 76 ~~~F~~pv~~~~-----~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~--Dv~li~~Na~~yN~~~--------s~~ 140 (202)
...|..|++... +++|-.+|+.+||+...-.++..+.|.++-+|.. ++.|||.|++.||+.. ..|
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aI 612 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAI 612 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHH
Confidence 567888887643 5689999999999999999999999999999999 9999999999999975 245
Q ss_pred HHHHHHHHHHHHHHHHHhhCC-CchHHHHhhh
Q 048123 141 YRQAHAMKELANKLFRTLKND-PENFEAACSM 171 (202)
Q Consensus 141 ~~~A~~L~~~~~~~~~~~~~~-~~~~~~~~~~ 171 (202)
...+..+......+...+... ....+.++..
T Consensus 613 lh~~~~~~v~s~~issll~d~~~~~~~~~iv~ 644 (1080)
T KOG0732|consen 613 LHRLEGLPVQSLDISSLLSDEGTEDLEEEIVH 644 (1080)
T ss_pred HHHHhccchHHHHHHHHHhccccccHHHHHHH
Confidence 556666666666666655544 6666777663
No 56
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=82.73 E-value=0.14 Score=47.87 Aligned_cols=76 Identities=9% Similarity=0.022 Sum_probs=69.0
Q ss_pred cccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048123 76 YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKELA 151 (202)
Q Consensus 76 ~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~~ 151 (202)
...|+..++...+|+||.+++-||.++...+++..+.|.....|..|+.+.|.|+-.|+.....++..+..|.+..
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 3568888889999999999999999999999999999999999999999999999999999998888888765543
No 57
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=78.76 E-value=0.39 Score=46.32 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=57.9
Q ss_pred ccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHHHH
Q 048123 79 FAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSY--------------Q----------TLGD------FEHDIYLMLK 128 (202)
Q Consensus 79 F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y--------------~----------s~~~------f~~Dv~li~~ 128 (202)
|.-++|....|-|.-++.-|.+|++++..|.+..| . ++.+ ..+-..+|-.
T Consensus 86 lv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 86 LVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred hccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 45577888889999999999999999999998776 1 2333 6677889999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHH
Q 048123 129 NAMHFNASDTVYYRQAHAMKELA 151 (202)
Q Consensus 129 Na~~yN~~~s~~~~~A~~L~~~~ 151 (202)
||+.++.|++ +++.++.+..+.
T Consensus 166 at~~~akPgt-mvqkmk~ikrLl 187 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKRLL 187 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHHHH
Confidence 9999999999 777776665544
No 58
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=77.10 E-value=4.5 Score=26.90 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 048123 102 SKITEKLNEGSYQTLGDFEHDIYLMLKN 129 (202)
Q Consensus 102 ~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 129 (202)
.-|+..+..|.|.|.++++.|..+++.-
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999998887653
No 59
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=72.80 E-value=20 Score=25.41 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q 048123 111 GSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 111 ~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
..|.|...|...+..|-..-..++..+..+...|..|...|++.|++.
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888888888877777777778889999999999999999854
No 60
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=66.88 E-value=9.4 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048123 102 SKITEKLNEGSYQTLGDFEHDIYLMLK 128 (202)
Q Consensus 102 ~~I~~kl~~~~Y~s~~~f~~Dv~li~~ 128 (202)
.-|+..+..|.|.|..+++.|...++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999999766664
No 61
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=43.08 E-value=6.1 Score=39.54 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=47.5
Q ss_pred ccCCCCcCCccchHhhcCCC--CCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q 048123 79 FAKPVDGTEVEDYYKVIKHP--MDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138 (202)
Q Consensus 79 F~~pv~~~~~p~Y~~iI~~P--mdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 138 (202)
+........+.++..++..| |++..+.+++..|.|.+..+|+.|+.+|..||..+...+.
T Consensus 789 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~r~~s~~~~~~~q~l~d~~li~r~a~~~~~~~~ 850 (1080)
T KOG0732|consen 789 PKEECQYESSDNVVKILQINQMDWLEEILKRVWSGEYSTPKQFLSDIKLILRDASSSEDSET 850 (1080)
T ss_pred ccCCccccccccceeehhhhhhHHHHHHhhcCCcccccccccccccchhhcccchhccCchh
Confidence 33334444567777777777 5577789999999999999999999999999999988654
No 62
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=33.23 E-value=73 Score=20.26 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=19.5
Q ss_pred CCHHHHHHHHhCCCCCCHHHHHHHH
Q 048123 99 MDLSKITEKLNEGSYQTLGDFEHDI 123 (202)
Q Consensus 99 mdL~~I~~kl~~~~Y~s~~~f~~Dv 123 (202)
|=|+.|-.+|+. .|.|.++|..|+
T Consensus 7 mLlS~VN~kLRD-~~~sLd~Lc~~~ 30 (55)
T PF14056_consen 7 MLLSIVNMKLRD-EYSSLDELCYDY 30 (55)
T ss_pred HHHHHHHHHHHh-ccCCHHHHHHHh
Confidence 347888888877 788999998875
No 63
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=32.93 E-value=79 Score=29.80 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=55.6
Q ss_pred cCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh---hcCCCC--------HHHHHHHHHH
Q 048123 80 AKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMH---FNASDT--------VYYRQAHAMK 148 (202)
Q Consensus 80 ~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~---yN~~~s--------~~~~~A~~L~ 148 (202)
.--+|...+.+|.-+=-.|+|+..|.+|++...|.. ++|...+..+-.||.. .|.++. ..+....+|.
T Consensus 187 ts~vne~~l~~~fGI~ve~VDmsEIirR~~~~~~d~-eE~e~al~wlk~~~~~~~dvn~~~~~~t~e~~~~~le~~akm~ 265 (588)
T PRK10991 187 GSIVDHNFFESYLGMRVEAVDMTELRRRIDQKIYDE-EELEMALAWAKKNCKEGEDENAEQYQRNAEQKRAVWEESVKMA 265 (588)
T ss_pred ccccCHHHHHHHhCCEEEEeCHHHHHHHHHhccCCH-HHHHHHHHHHHHhcccccccCchhccccccccHHHHHHHHHHH
Confidence 334455567789999999999999999999999976 6999999999999864 455221 2244444555
Q ss_pred HHHHHHHHHh
Q 048123 149 ELANKLFRTL 158 (202)
Q Consensus 149 ~~~~~~~~~~ 158 (202)
-.+++++++-
T Consensus 266 lairdlm~en 275 (588)
T PRK10991 266 MIIRDLMQGN 275 (588)
T ss_pred HHHHHHHHhC
Confidence 5555555544
No 64
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=25.71 E-value=1.4e+02 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Q 048123 101 LSKITEKLNEGSYQTLGDFEHDIYLMLKNAM 131 (202)
Q Consensus 101 L~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 131 (202)
...|..-++.|.|.|..+|+.+-...+.--.
T Consensus 14 ~~~i~~lV~~G~y~s~SeviR~alr~l~~~~ 44 (89)
T COG3609 14 VEFIDELVESGRYKSRSEVIRAALRLLLEKR 44 (89)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3568899999999999999998766655433
No 65
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=25.57 E-value=23 Score=28.16 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=37.1
Q ss_pred CCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q 048123 83 VDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138 (202)
Q Consensus 83 v~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 138 (202)
||++.+.+|.-+=..-+|...|.+|++.+-|. .++|..-+..+=.||..|...+.
T Consensus 18 vd~~f~~~ylGmr~E~VD~~Ei~RR~e~~iyD-~~E~e~A~~W~~~~~~~g~d~np 72 (181)
T PF07882_consen 18 VDPDFFQEYLGMRVEYVDMSEIIRRMEEGIYD-EEEFEKALAWVKENCKEGDDKNP 72 (181)
T ss_dssp --HHHHHHCT--EEEEE-THHHHHHHHCT-S--HHHHHHHHHHHHHHSEE---TST
T ss_pred cCHHHHHHHhCCCceeecHHHHHHHHHccCCC-HHHHHHHHHHHHHhCCcCCCCCc
Confidence 34444556666667778999999999999896 58999999999999998876553
No 66
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=24.12 E-value=80 Score=23.66 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=29.3
Q ss_pred hHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 048123 91 YYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNA 130 (202)
Q Consensus 91 Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 130 (202)
=|..|..|+|...|++++.. .+.+|..+|..++.+.
T Consensus 83 gy~yiY~~i~~ee~k~~i~~----~l~~w~~~~~~~i~~~ 118 (126)
T COG3355 83 GYYYLYKPIDPEEIKKKILK----DLDEWYDKMKQLIEEF 118 (126)
T ss_pred ceeEEEecCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34568899999999999976 6888888888887764
No 67
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=23.89 E-value=1.4e+02 Score=17.69 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=17.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHh
Q 048123 132 HFNASDTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 132 ~yN~~~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
.|++++|++.+.-.+|-....+.++.+
T Consensus 14 AyYP~ESELskr~rrLIRaa~k~leal 40 (44)
T PF08134_consen 14 AYYPTESELSKRIRRLIRAARKQLEAL 40 (44)
T ss_pred eecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777776666666666665554
No 68
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=22.01 E-value=62 Score=26.38 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCC
Q 048123 117 GDFEHDIYLMLKNAMHFNASDT 138 (202)
Q Consensus 117 ~~f~~Dv~li~~Na~~yN~~~s 138 (202)
..|.+-++.|+.||+.||+...
T Consensus 185 vsWt~aLR~IV~nCYk~Hgred 206 (214)
T PF10491_consen 185 VSWTQALRTIVKNCYKYHGRED 206 (214)
T ss_pred ccHHHHHHHHHHHHHHHhcHHH
Confidence 3889999999999999998644
No 69
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=20.82 E-value=2.6e+02 Score=22.07 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=12.4
Q ss_pred HHhCCCCCCHHHHHHHHH
Q 048123 107 KLNEGSYQTLGDFEHDIY 124 (202)
Q Consensus 107 kl~~~~Y~s~~~f~~Dv~ 124 (202)
.-+..-|.|+++|+.+|.
T Consensus 100 n~~~~Gy~sv~~fv~am~ 117 (175)
T PF11860_consen 100 NWKALGYASVEEFVEAMC 117 (175)
T ss_pred HHHHcCCCCHHHHHHHHH
Confidence 334456888888888764
No 70
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=20.58 E-value=3.8e+02 Score=21.82 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=5.9
Q ss_pred CCCCCCCcccCc
Q 048123 1 MAQGQGTRKSSD 12 (202)
Q Consensus 1 ~~~g~~~r~~s~ 12 (202)
|+ |+|||+..+
T Consensus 1 MS-gRGggrg~~ 11 (233)
T PF11705_consen 1 MS-GRGGGRGGR 11 (233)
T ss_pred CC-CCCCCCCCC
Confidence 77 655554333
Done!