Query 048123
Match_columns 202
No_of_seqs 198 out of 1309
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 3.1E-31 1.1E-35 196.1 15.3 107 54-160 9-115 (117)
2 2d9e_A Peregrin; four-helix bu 100.0 3.7E-31 1.3E-35 196.8 14.1 108 54-161 3-110 (121)
3 3d7c_A General control of amin 100.0 5E-31 1.7E-35 193.5 13.1 104 56-159 5-108 (112)
4 4alg_A Bromodomain-containing 100.0 2.5E-31 8.5E-36 205.4 11.9 118 50-167 24-143 (154)
5 2i7k_A Bromodomain-containing 100.0 6.8E-31 2.3E-35 194.2 12.9 107 54-160 4-110 (117)
6 3mb4_A Protein polybromo-1; PB 100.0 1.7E-30 5.7E-35 194.0 14.0 109 53-161 10-124 (124)
7 2oss_A HUNK1 protein, bromodom 100.0 2.9E-30 1E-34 193.4 14.8 107 54-160 17-125 (127)
8 1e6i_A Transcriptional activat 100.0 1.3E-30 4.4E-35 193.8 12.6 102 58-159 13-114 (121)
9 3rcw_A Bromodomain-containing 100.0 2.1E-30 7.1E-35 196.2 13.4 114 54-167 9-122 (135)
10 3hme_A Bromodomain-containing 100.0 2.7E-30 9.3E-35 192.6 13.2 105 54-158 9-113 (123)
11 2dat_A Possible global transcr 100.0 4E-30 1.4E-34 191.7 14.0 106 54-159 9-120 (123)
12 2grc_A Probable global transcr 100.0 3.1E-30 1.1E-34 193.8 13.2 113 54-166 7-126 (129)
13 3nxb_A CAT eye syndrome critic 100.0 4.3E-30 1.5E-34 189.7 13.0 101 57-157 15-115 (116)
14 3q2e_A Bromodomain and WD repe 100.0 5.1E-30 1.7E-34 191.1 13.2 107 55-161 7-114 (123)
15 3jvl_A Bromodomain-containing 100.0 2.7E-30 9.3E-35 191.8 10.7 109 55-163 6-119 (120)
16 3mb3_A PH-interacting protein; 100.0 8.8E-30 3E-34 192.7 13.6 107 55-161 18-125 (135)
17 3iu5_A Protein polybromo-1; PB 100.0 1.4E-29 4.8E-34 186.9 13.1 105 57-161 4-114 (116)
18 3uv4_A Second bromodomain of h 100.0 8E-30 2.7E-34 197.6 11.7 121 56-176 27-148 (158)
19 2ouo_A HUNK1 protein, bromodom 100.0 1.3E-29 4.4E-34 190.6 12.2 104 57-160 21-129 (130)
20 3ljw_A Protein polybromo-1; al 100.0 1.6E-29 5.6E-34 187.6 12.4 104 56-159 6-115 (120)
21 2yyn_A Transcription intermedi 100.0 3.6E-29 1.2E-33 189.3 14.1 103 59-162 21-125 (135)
22 3p1f_A CREB-binding protein; s 100.0 3.1E-29 1.1E-33 185.9 13.4 103 57-159 10-115 (119)
23 3mqm_A Probable histone-lysine 100.0 1.2E-29 4.1E-34 189.8 11.1 109 58-166 9-123 (126)
24 3fkm_X Signaling protein; brom 100.0 4E-29 1.4E-33 195.2 12.7 107 53-159 16-124 (166)
25 3k2j_A Protein polybromo-1; PB 100.0 5.5E-29 1.9E-33 187.1 12.8 103 59-161 18-126 (130)
26 3dai_A ATPase family AAA domai 100.0 1.2E-28 4E-33 185.4 12.8 112 58-169 10-126 (130)
27 2ri7_A Nucleosome-remodeling f 100.0 2E-28 7E-33 192.5 11.9 105 55-159 69-173 (174)
28 3tlp_A Protein polybromo-1; PB 100.0 8.3E-28 2.8E-32 184.9 13.7 107 60-166 26-139 (150)
29 2dkw_A Hypothetical protein KI 100.0 7.8E-28 2.7E-32 181.0 11.7 117 55-176 9-130 (131)
30 3o36_A Transcription intermedi 99.9 6.9E-27 2.4E-31 185.4 14.0 105 54-159 77-183 (184)
31 3uv5_A Transcription initiatio 99.9 8.2E-27 2.8E-31 194.7 12.5 106 56-161 12-117 (265)
32 3uv5_A Transcription initiatio 99.9 3.3E-26 1.1E-30 191.0 12.9 115 58-172 136-251 (265)
33 3u5n_A E3 ubiquitin-protein li 99.9 9.4E-26 3.2E-30 182.0 13.9 107 54-161 77-203 (207)
34 3aad_A Transcription initiatio 99.9 2.9E-26 1E-30 193.8 9.8 102 57-158 46-147 (292)
35 3aad_A Transcription initiatio 99.9 1E-25 3.5E-30 190.4 12.4 114 60-173 171-285 (292)
36 2ro1_A Transcription intermedi 99.9 7.1E-26 2.4E-30 180.3 10.6 103 55-162 73-180 (189)
37 2r0y_A Chromatin structure-rem 99.9 4.1E-24 1.4E-28 181.9 10.8 87 72-158 177-263 (311)
38 2r10_A Chromatin structure-rem 99.9 7.2E-24 2.5E-28 183.9 11.0 86 73-158 228-313 (361)
39 2r10_A Chromatin structure-rem 99.9 3.5E-23 1.2E-27 179.6 10.9 101 56-158 76-179 (361)
40 2r0y_A Chromatin structure-rem 99.9 3.8E-22 1.3E-26 169.8 10.2 103 54-158 24-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.8 2.1E-20 7.1E-25 141.7 13.3 101 57-161 6-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.7 1.3E-16 4.3E-21 125.8 9.6 93 59-162 76-168 (183)
43 3kxe_C Antitoxin protein PARD- 51.8 17 0.00059 24.3 3.8 30 101-130 15-44 (88)
44 3ro3_B Minsc, peptide of prote 42.1 13 0.00046 18.0 1.4 15 113-127 7-21 (22)
45 1fr2_B Colicin E9; protein-pro 23.9 69 0.0024 23.2 3.3 30 102-131 36-65 (134)
46 2jb0_B Colicin E7; hydrolase/i 23.9 70 0.0024 23.1 3.3 30 102-131 33-62 (131)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.97 E-value=3.1e-31 Score=196.08 Aligned_cols=107 Identities=30% Similarity=0.436 Sum_probs=102.2
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
.....+...|..||+.|..++.+++|..||++..+||||++|++||||++|++||+++.|.++++|..||+|||.||+.|
T Consensus 9 ~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (117)
T 3g0l_A 9 RDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETF 88 (117)
T ss_dssp CCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44455789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 048123 134 NASDTVYYRQAHAMKELANKLFRTLKN 160 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~~~~~~ 160 (202)
|+++|.++.+|..|+..|++.|+++..
T Consensus 89 N~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 89 NEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998864
No 2
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=3.7e-31 Score=196.76 Aligned_cols=108 Identities=31% Similarity=0.548 Sum_probs=103.4
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
....|+...|..||+.|.+++.+++|..||++..+|+||++|++||||++|++||+++.|.++++|..||+|||.||+.|
T Consensus 3 ~~~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 82 (121)
T 2d9e_A 3 SGSSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKY 82 (121)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 134 NASDTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
|+++|.++.+|..|+..|++++++++..
T Consensus 83 N~~~s~~~~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 83 NAKDTIFYRAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988653
No 3
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.97 E-value=5e-31 Score=193.53 Aligned_cols=104 Identities=30% Similarity=0.418 Sum_probs=100.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcC
Q 048123 56 AMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNA 135 (202)
Q Consensus 56 ~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 135 (202)
...+...|..||+.|.+++.+++|..||++..+|+||++|++||||+||++||++|.|.++++|..||+|||.||+.||+
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 136 SDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 136 ~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
++|.++.+|..|+..|++.++++.
T Consensus 85 ~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 85 PDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999874
No 4
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.97 E-value=2.5e-31 Score=205.36 Aligned_cols=118 Identities=18% Similarity=0.316 Sum_probs=107.0
Q ss_pred cCCCcCCcHHHHHHHHHHHHHHcCCCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048123 50 DMSSIIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLML 127 (202)
Q Consensus 50 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~ 127 (202)
..+......+..+|..||+.|.+++.+++|..||++. .+|+||++|++||||++|++||+++.|.++++|+.||+|||
T Consensus 24 ~~~~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 103 (154)
T 4alg_A 24 KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMF 103 (154)
T ss_dssp --CCCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3444555667888999999999999999999999988 69999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 048123 128 KNAMHFNASDTVYYRQAHAMKELANKLFRTLKNDPENFEA 167 (202)
Q Consensus 128 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~~ 167 (202)
.||++||++++.++.+|..|+..|++.|+++..+......
T Consensus 104 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~e~~~ 143 (154)
T 4alg_A 104 TNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVV 143 (154)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCCBCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchhccccC
Confidence 9999999999999999999999999999999776655443
No 5
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.97 E-value=6.8e-31 Score=194.16 Aligned_cols=107 Identities=30% Similarity=0.559 Sum_probs=102.1
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
....++...|..||+.|.+++.+++|..||++..+|+||++|++||||++|++||++|.|.++++|..||+|||.||+.|
T Consensus 4 ~~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 4 VEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 048123 134 NASDTVYYRQAHAMKELANKLFRTLKN 160 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~~~~~~ 160 (202)
|+++|.++.+|..|+..|++++..+.-
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987743
No 6
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.97 E-value=1.7e-30 Score=194.00 Aligned_cols=109 Identities=28% Similarity=0.492 Sum_probs=102.8
Q ss_pred CcCCcHHHHHHHHHHHHHHc------CCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048123 53 SIIAMPERKMLDLLLDRLKR------RDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLM 126 (202)
Q Consensus 53 ~~~~~~~~~~~~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li 126 (202)
+....++.+.|..||+.|.. ++.+++|..||+...+|+||++|++||||++|++||+++.|.++++|..||+||
T Consensus 10 ~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 89 (124)
T 3mb4_A 10 SKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMM 89 (124)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35577899999999999998 566799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 127 LKNAMHFNASDTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 127 ~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
|.||+.||+++|.++.+|..|+..|++.|+++..+
T Consensus 90 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~d 124 (124)
T 3mb4_A 90 FNNACTYNEPESLIYKDALVLHKVLLETRRDLEGD 124 (124)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998653
No 7
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.97 E-value=2.9e-30 Score=193.42 Aligned_cols=107 Identities=25% Similarity=0.377 Sum_probs=100.5
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAM 131 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 131 (202)
.....++.+|..||+.|.+++.+++|..||++. .+||||++|++||||++|++||+++.|.++++|..||+|||+||+
T Consensus 17 r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 96 (127)
T 2oss_A 17 RQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCY 96 (127)
T ss_dssp CCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 445567888999999999999999999999975 799999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 048123 132 HFNASDTVYYRQAHAMKELANKLFRTLKN 160 (202)
Q Consensus 132 ~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 160 (202)
+||+++|.++.+|..|+..|++.++++..
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 97 IYNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999988754
No 8
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.97 E-value=1.3e-30 Score=193.82 Aligned_cols=102 Identities=32% Similarity=0.574 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 048123 58 PERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 137 (202)
+....|..||+.|..++.+++|..||++..+|+||++|++||||++|++||+++.|.++++|..||+|||.||+.||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh
Q 048123 138 TVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 138 s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
|.++.+|..|+..|++.++++.
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999998874
No 9
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=196.19 Aligned_cols=114 Identities=34% Similarity=0.646 Sum_probs=107.2
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
....++...|..||+.|..++.+++|..||++..+||||++|++||||++|++||+++.|.++++|..||+|||.||+.|
T Consensus 9 ~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 9 LRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 048123 134 NASDTVYYRQAHAMKELANKLFRTLKNDPENFEA 167 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~~ 167 (202)
|+++|.+|++|..|+..|+++++++....+....
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~~ 122 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 122 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999776655444
No 10
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=192.59 Aligned_cols=105 Identities=32% Similarity=0.575 Sum_probs=99.8
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
....|+...|..||+.|..++.+++|..||++..+||||++|++||||++|++||+++.|.++++|..||+|||.||+.|
T Consensus 9 ~~~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (123)
T 3hme_A 9 NESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTY 88 (123)
T ss_dssp --CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 048123 134 NASDTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
|+++|.++++|..|+..|.+.+.+.
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 89 NRPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988755
No 11
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=191.71 Aligned_cols=106 Identities=23% Similarity=0.440 Sum_probs=99.7
Q ss_pred cCCcHHHHHHHHHHHHHHcCC------CcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048123 54 IIAMPERKMLDLLLDRLKRRD------SYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLML 127 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~------~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~ 127 (202)
.....+.+.|..||+.|..+. .+++|..||+...+|+||++|++||||++|++||+++.|.++++|..||+|||
T Consensus 9 ~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 9 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 345667899999999999875 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 128 KNAMHFNASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 128 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
.||+.||+++|.++.+|..|+..|++.++++.
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998764
No 12
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.97 E-value=3.1e-30 Score=193.75 Aligned_cols=113 Identities=20% Similarity=0.435 Sum_probs=102.8
Q ss_pred cCCcHHHHHHHHHHHHHHcCC-------CcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048123 54 IIAMPERKMLDLLLDRLKRRD-------SYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLM 126 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~-------~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li 126 (202)
.....+.+.|..||+.|.++. .+++|..||+...+|+||++|++||||+||++||.++.|.++++|..||+||
T Consensus 7 ~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 7 PNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 445667899999999999875 5799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHhhCCCchHH
Q 048123 127 LKNAMHFNASDTVYYRQAHAMKELANKLFRTLKNDPENFE 166 (202)
Q Consensus 127 ~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~ 166 (202)
|.||++||+++|.++.+|..|+..|++.++++....+..+
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~~~ 126 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 126 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCcccc
Confidence 9999999999999999999999999999999976655433
No 13
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.97 E-value=4.3e-30 Score=189.66 Aligned_cols=101 Identities=27% Similarity=0.465 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 57 MPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
.++.+.|..||+.|..++.+++|..||++..+|+||++|++||||++|++||+++.|.++++|..||+|||.||+.||++
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 94 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGE 94 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 048123 137 DTVYYRQAHAMKELANKLFRT 157 (202)
Q Consensus 137 ~s~~~~~A~~L~~~~~~~~~~ 157 (202)
+|.++.+|..|+..|++.|.+
T Consensus 95 ~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 95 SSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998863
No 14
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=191.12 Aligned_cols=107 Identities=24% Similarity=0.435 Sum_probs=100.5
Q ss_pred CCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 55 IAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 55 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
....+++.|..||+.|..++.+++|..||++..+|+||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 135 AS-DTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 135 ~~-~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
++ +|.++.+|..|+..|++.++++..+
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 114 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSD 114 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 9999999999999999999988644
No 15
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.97 E-value=2.7e-30 Score=191.79 Aligned_cols=109 Identities=28% Similarity=0.470 Sum_probs=101.0
Q ss_pred CCcHHHHHHHHHHHHHHcCCC---cccccCCCCcCC--ccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 048123 55 IAMPERKMLDLLLDRLKRRDS---YKIFAKPVDGTE--VEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKN 129 (202)
Q Consensus 55 ~~~~~~~~~~~il~~l~~~~~---~~~F~~pv~~~~--~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 129 (202)
....+.+.|..||..|..++. +++|..||++.. +|+||++|++||||++|++||+++.|.++++|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 445678999999999999887 899999999988 999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHHhhCCCc
Q 048123 130 AMHFNASDTVYYRQAHAMKELANKLFRTLKNDPE 163 (202)
Q Consensus 130 a~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~ 163 (202)
|++||+++|.++.+|..|+..|++.|+++..+++
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~~ 119 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPE 119 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC---
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 9999999999999999999999999999876543
No 16
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.97 E-value=8.8e-30 Score=192.73 Aligned_cols=107 Identities=22% Similarity=0.389 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 55 IAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 55 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
....+.+.|..||+.|..++.+++|..||++..+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 135 AS-DTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 135 ~~-~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
++ +|.++.+|..|+..|++.+..+..+
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 8999999999999999999987443
No 17
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=186.89 Aligned_cols=105 Identities=21% Similarity=0.357 Sum_probs=98.9
Q ss_pred cHHHHHHHHHHHHHHcC------CCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 048123 57 MPERKMLDLLLDRLKRR------DSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNA 130 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~~------~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 130 (202)
....+.|..|++.|..+ +.+++|..||+...+|+||++|++||||++|++||+++.|.++++|..||+|||.||
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 83 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNA 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 34578899999999887 458999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 131 MHFNASDTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 131 ~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
+.||+++|.++.+|..|+..|++.++++.+.
T Consensus 84 ~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 84 KSYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998663
No 18
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.96 E-value=8e-30 Score=197.57 Aligned_cols=121 Identities=23% Similarity=0.403 Sum_probs=106.9
Q ss_pred CcHHHHHHHHHHHH-HHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 56 AMPERKMLDLLLDR-LKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 56 ~~~~~~~~~~il~~-l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
...+..+|..|+.. |..++.+++|..||++..+|+||++|++||||+||++||+++.|.++++|..||+|||.||++||
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 33445566666654 77789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhCCCchHHHHhhhhcccC
Q 048123 135 ASDTVYYRQAHAMKELANKLFRTLKNDPENFEAACSMRGRRR 176 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (202)
+++|.++.+|..|...|.+.++++.......+..+.+...+.
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~~i~~~~e~a 148 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAA 148 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877777777664443
No 19
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=1.3e-29 Score=190.63 Aligned_cols=104 Identities=28% Similarity=0.457 Sum_probs=97.3
Q ss_pred cHHHHHHHHHHHHHHcCCC---cccccCCCCcCC--ccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Q 048123 57 MPERKMLDLLLDRLKRRDS---YKIFAKPVDGTE--VEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAM 131 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~~~~---~~~F~~pv~~~~--~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 131 (202)
....+.|..||..|..++. +++|..||++.. +|+||++|++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 21 ~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 100 (130)
T 2ouo_A 21 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCY 100 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3457889999999998875 789999999874 99999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 048123 132 HFNASDTVYYRQAHAMKELANKLFRTLKN 160 (202)
Q Consensus 132 ~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 160 (202)
+||+++|.++.+|..|+..|++.|.++..
T Consensus 101 ~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 101 KYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999998754
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.96 E-value=1.6e-29 Score=187.59 Aligned_cols=104 Identities=25% Similarity=0.486 Sum_probs=98.6
Q ss_pred CcHHHHHHHHHHHHHHcCCC------cccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 048123 56 AMPERKMLDLLLDRLKRRDS------YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKN 129 (202)
Q Consensus 56 ~~~~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 129 (202)
...+...|..+++.|..... +++|..||+...+|+||++|++||||++|++||.++.|.++++|..||+|||.|
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 34568899999999988766 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 130 AMHFNASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 130 a~~yN~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
|+.||+++|.++.+|..|+..|++.|+++.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999885
No 21
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.96 E-value=3.6e-29 Score=189.35 Aligned_cols=103 Identities=31% Similarity=0.491 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 59 ERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNE--GSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 59 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~--~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
..+.|..||..|+.++.+++|..||+. .+|+||++|++||||++|++||++ +.|.++++|..||+|||.||++||++
T Consensus 21 ~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 99 (135)
T 2yyn_A 21 DKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 99 (135)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 468899999999999999999999988 799999999999999999999998 58999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCC
Q 048123 137 DTVYYRQAHAMKELANKLFRTLKNDP 162 (202)
Q Consensus 137 ~s~~~~~A~~L~~~~~~~~~~~~~~~ 162 (202)
+|.++.+|..|+..|+++++++..+.
T Consensus 100 ~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 100 DSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999986554
No 22
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.96 E-value=3.1e-29 Score=185.85 Aligned_cols=103 Identities=30% Similarity=0.501 Sum_probs=97.3
Q ss_pred cHHHHHHHHHHHHHHc-CCCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhh
Q 048123 57 MPERKMLDLLLDRLKR-RDSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHF 133 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~-~~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 133 (202)
..+.+.|..+|..|.. ++.+++|..||++. .+|+||++|++||||++|++||+++.|.++++|..||+|||+||+.|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467889999999887 67999999999988 79999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 134 NASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 134 N~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
|+++|.++.+|..|+..|++.++.+.
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998874
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=189.83 Aligned_cols=109 Identities=16% Similarity=0.255 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHcCC------CcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Q 048123 58 PERKMLDLLLDRLKRRD------SYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAM 131 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~~------~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 131 (202)
.+.+.|..|++.|..+. .+++|..||+...+||||++|++||||++|++||+++.|.++++|..||+|||.||+
T Consensus 9 ~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 88 (126)
T 3mqm_A 9 RLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAE 88 (126)
T ss_dssp HHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 46788999999998764 389999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhhCCCchHH
Q 048123 132 HFNASDTVYYRQAHAMKELANKLFRTLKNDPENFE 166 (202)
Q Consensus 132 ~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~ 166 (202)
.||+++|.++.+|..|+..|++.+.++....+.+.
T Consensus 89 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~i~ 123 (126)
T 3mqm_A 89 KYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEIV 123 (126)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877665544
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=4e-29 Score=195.20 Aligned_cols=107 Identities=27% Similarity=0.392 Sum_probs=99.1
Q ss_pred CcCCcHHHHHHHHHHHHHHcCCCcccccCCCCcC--CccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 048123 53 SIIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGT--EVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNA 130 (202)
Q Consensus 53 ~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 130 (202)
......|...|..||..|+.++.+++|..||++. .+|+||++|++||||+||++||.++.|.++++|..||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999976 59999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 131 MHFNASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 131 ~~yN~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
++||+++|.++.+|..|+..|++.|.++.
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 96 SLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999998874
No 25
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.96 E-value=5.5e-29 Score=187.11 Aligned_cols=103 Identities=24% Similarity=0.393 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCC------cccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Q 048123 59 ERKMLDLLLDRLKRRDS------YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMH 132 (202)
Q Consensus 59 ~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 132 (202)
+...|..+++.|..... +++|..||+...+|+||++|++||||++|++||+++.|.++++|..||+|||.||+.
T Consensus 18 l~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (130)
T 3k2j_A 18 LYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKR 97 (130)
T ss_dssp HHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678888888877644 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 133 FNASDTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 133 yN~~~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
||+++|.++++|..|+..|++.|+++...
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 98 YNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998644
No 26
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.96 E-value=1.2e-28 Score=185.38 Aligned_cols=112 Identities=33% Similarity=0.509 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 048123 58 PERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASD 137 (202)
Q Consensus 58 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 137 (202)
.+..+|..+++.|..++.+++|..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||+.||+++
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHH----HHHHHHHHHHHHHHHH-HhhCCCchHHHHh
Q 048123 138 TVY----YRQAHAMKELANKLFR-TLKNDPENFEAAC 169 (202)
Q Consensus 138 s~~----~~~A~~L~~~~~~~~~-~~~~~~~~~~~~~ 169 (202)
|++ +..|..|++.+..+++ ++..+......+.
T Consensus 90 s~~~~~i~~~A~~L~~~~~~~i~~el~~~~~~~ce~i 126 (130)
T 3dai_A 90 DPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEI 126 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 866 7888999999999986 5555444443333
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.95 E-value=2e-28 Score=192.49 Aligned_cols=105 Identities=28% Similarity=0.498 Sum_probs=99.7
Q ss_pred CCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 55 IAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 55 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
....+...|..||..|..++.+++|..||++..+|+||++|++||||++|++||+++.|.++++|..||+|||+||++||
T Consensus 69 l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 148 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYN 148 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 135 ASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 135 ~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
+++|.++.+|..|+..|++.+++++
T Consensus 149 ~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 149 PSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988764
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.95 E-value=8.3e-28 Score=184.91 Aligned_cols=107 Identities=24% Similarity=0.463 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHcCCC-------cccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Q 048123 60 RKMLDLLLDRLKRRDS-------YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMH 132 (202)
Q Consensus 60 ~~~~~~il~~l~~~~~-------~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 132 (202)
...|..|+..|.+... +++|..||+...+|+||++|++||||++|++||+++.|.++++|..||+|||.||+.
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678888888876544 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhhCCCchHH
Q 048123 133 FNASDTVYYRQAHAMKELANKLFRTLKNDPENFE 166 (202)
Q Consensus 133 yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~ 166 (202)
||+++|.+|.+|..|+..|++.|+++...++...
T Consensus 106 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d~ 139 (150)
T 3tlp_A 106 YNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDD 139 (150)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHccCCCChhh
Confidence 9999999999999999999999999987766543
No 29
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=7.8e-28 Score=180.97 Aligned_cols=117 Identities=30% Similarity=0.464 Sum_probs=105.5
Q ss_pred CCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhc
Q 048123 55 IAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFN 134 (202)
Q Consensus 55 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 134 (202)
....+..+|..||+.|..++.+++|..| +||||++|++||||+||++||.++.|.++++|..||+|||.||+.||
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN 83 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYN 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3345678999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred CCCCH----HHHHHHHHHHHHHHHH-HHhhCCCchHHHHhhhhcccC
Q 048123 135 ASDTV----YYRQAHAMKELANKLF-RTLKNDPENFEAACSMRGRRR 176 (202)
Q Consensus 135 ~~~s~----~~~~A~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 176 (202)
+++|+ ++..|..|++.|..++ .++....+....+..+.++.+
T Consensus 84 ~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~~~f~~~~~~i~~~~~~r 130 (131)
T 2dkw_A 84 PDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKESGPSS 130 (131)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTTSCCC
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99985 6799999999999988 688888887777777776554
No 30
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.94 E-value=6.9e-27 Score=185.39 Aligned_cols=105 Identities=31% Similarity=0.475 Sum_probs=98.3
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHh
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNE--GSYQTLGDFEHDIYLMLKNAM 131 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~--~~Y~s~~~f~~Dv~li~~Na~ 131 (202)
.....+++.|+.||..|..++.+++|..||+.. +|+||++|++||||++|++||++ +.|.++++|..||+|||+||+
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~ 155 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 155 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 344566789999999999999999999999864 89999999999999999999998 789999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 048123 132 HFNASDTVYYRQAHAMKELANKLFRTLK 159 (202)
Q Consensus 132 ~yN~~~s~~~~~A~~L~~~~~~~~~~~~ 159 (202)
+||+++|.++++|..|+..|+++++++.
T Consensus 156 ~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 156 EFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998873
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.94 E-value=8.2e-27 Score=194.72 Aligned_cols=106 Identities=22% Similarity=0.476 Sum_probs=101.1
Q ss_pred CcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcC
Q 048123 56 AMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNA 135 (202)
Q Consensus 56 ~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 135 (202)
...+...|..||+.|..++.+++|..||++..+|+||++|++||||+||++||+++.|.++++|..||+|||+||+.||+
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 136 SDTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 136 ~~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
++|.++.+|..|+..|++.++++...
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~~~~ 117 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEKEDK 117 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999887543
No 32
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.94 E-value=3.3e-26 Score=191.03 Aligned_cols=115 Identities=24% Similarity=0.425 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHH-HHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 58 PERKMLDLLLDR-LKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 58 ~~~~~~~~il~~-l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
.+..+|..++.. |..++.+++|..||++..+|+||++|++||||+||++||.+|.|.++++|..||+|||.||+.||++
T Consensus 136 ~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~ 215 (265)
T 3uv5_A 136 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 215 (265)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 345566666644 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCchHHHHhhhh
Q 048123 137 DTVYYRQAHAMKELANKLFRTLKNDPENFEAACSMR 172 (202)
Q Consensus 137 ~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (202)
+|.++.+|..|+..|.+.++++.......+.++...
T Consensus 216 ~s~~~~~A~~l~~~~~~~~~~~~~~~~~~e~~i~~~ 251 (265)
T 3uv5_A 216 ESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTA 251 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999987776666655433
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.93 E-value=9.4e-26 Score=181.98 Aligned_cols=107 Identities=29% Similarity=0.447 Sum_probs=100.2
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHHHHHH
Q 048123 54 IIAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNE---GSYQTLGDFEHDIYLMLKNA 130 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~---~~Y~s~~~f~~Dv~li~~Na 130 (202)
.....+++.|+.||..|..++.+++|..||+. .+|+||++|++||||++|++||++ +.|.++++|..||+|||+||
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na 155 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNC 155 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHH
Confidence 44455678999999999999999999999987 799999999999999999999997 79999999999999999999
Q ss_pred hhhcC-----------------CCCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 131 MHFNA-----------------SDTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 131 ~~yN~-----------------~~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
++||+ +++.++++|..|+..|+++++++..+
T Consensus 156 ~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 156 ERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999 99999999999999999999998654
No 34
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=193.77 Aligned_cols=102 Identities=23% Similarity=0.485 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 048123 57 MPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNAS 136 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 136 (202)
..+..+|..||+.|..++.+++|..||++..+|+||++|++||||+||++||+++.|.++.+|..||+|||+||++||++
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 048123 137 DTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 137 ~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
+|.++.+|..|+..|++.++++
T Consensus 126 ~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTGGGS
T ss_pred chHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999998877654
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=190.42 Aligned_cols=114 Identities=25% Similarity=0.439 Sum_probs=102.7
Q ss_pred HHHHHHHHH-HHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q 048123 60 RKMLDLLLD-RLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138 (202)
Q Consensus 60 ~~~~~~il~-~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 138 (202)
..++..++. .|+.++.+++|..||++..+||||++|++||||++|++||.++.|.++++|..||+|||.||+.||+++|
T Consensus 171 ~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 171 SFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344555443 4788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCchHHHHhhhhc
Q 048123 139 VYYRQAHAMKELANKLFRTLKNDPENFEAACSMRG 173 (202)
Q Consensus 139 ~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (202)
.+|.+|..|+..|++.++++......++.++...+
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~~~l~~le~~i~~~~ 285 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAK 285 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887777777766543
No 36
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.93 E-value=7.1e-26 Score=180.25 Aligned_cols=103 Identities=14% Similarity=0.232 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcC--CCCCHHHHHHHHhCC---CCCCHHHHHHHHHHHHHH
Q 048123 55 IAMPERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIK--HPMDLSKITEKLNEG---SYQTLGDFEHDIYLMLKN 129 (202)
Q Consensus 55 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~--~PmdL~~I~~kl~~~---~Y~s~~~f~~Dv~li~~N 129 (202)
.....+..|..||..|..++.+++|.+||+ |+||.+|+ +||||+||++||+++ .|.++++|++||+|||+|
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N 148 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQ 148 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHH
Confidence 344457789999999999999999999998 67999998 899999999999999 999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHHhhCCC
Q 048123 130 AMHFNASDTVYYRQAHAMKELANKLFRTLKNDP 162 (202)
Q Consensus 130 a~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~ 162 (202)
|++|| +++.++.+|..|+..|++.|+++..+.
T Consensus 149 ~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 149 FNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999 578889999999999999999986553
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.90 E-value=4.1e-24 Score=181.94 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=83.9
Q ss_pred cCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048123 72 RRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKELA 151 (202)
Q Consensus 72 ~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~~ 151 (202)
.++.+++|..||++..+|+||++|++||||+||++||+++.|.++++|..||+|||+||++||+++|.+|.+|..|+..|
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 256 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 256 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 048123 152 NKLFRTL 158 (202)
Q Consensus 152 ~~~~~~~ 158 (202)
++++++.
T Consensus 257 ~~~~~~~ 263 (311)
T 2r0y_A 257 NYLIQKE 263 (311)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999874
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.90 E-value=7.2e-24 Score=183.89 Aligned_cols=86 Identities=29% Similarity=0.519 Sum_probs=83.4
Q ss_pred CCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 048123 73 RDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDTVYYRQAHAMKELAN 152 (202)
Q Consensus 73 ~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~~~ 152 (202)
++.+++|..||+...+||||++|++||||++|++||+++.|.++++|..||+|||+||+.||+++|.+|.+|..|+..|+
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 048123 153 KLFRTL 158 (202)
Q Consensus 153 ~~~~~~ 158 (202)
+++++.
T Consensus 308 ~~~~~~ 313 (361)
T 2r10_A 308 YLIQKE 313 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.89 E-value=3.5e-23 Score=179.59 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=90.5
Q ss_pred CcHHHHHHHHHHHHHHcC--CCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHhh
Q 048123 56 AMPERKMLDLLLDRLKRR--DSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQ-TLGDFEHDIYLMLKNAMH 132 (202)
Q Consensus 56 ~~~~~~~~~~il~~l~~~--~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~-s~~~f~~Dv~li~~Na~~ 132 (202)
...+..+|..+|+.+... ..+++|..||+...+||||++|++||||+||++|| +.|. ++++|..||+|||.||+.
T Consensus 76 ~~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 76 IPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp CTTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 445678899999988653 44799999999999999999999999999999998 5555 899999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHh
Q 048123 133 FNASDTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 133 yN~~~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
||+++|.++.+|..|+.+|.+.|.+.
T Consensus 154 yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 154 YNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999877655
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.87 E-value=3.8e-22 Score=169.78 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=90.4
Q ss_pred cCCcHHHHHHHHHHHHHHcC--CCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHH
Q 048123 54 IIAMPERKMLDLLLDRLKRR--DSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQ-TLGDFEHDIYLMLKNA 130 (202)
Q Consensus 54 ~~~~~~~~~~~~il~~l~~~--~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~-s~~~f~~Dv~li~~Na 130 (202)
.....+..++..+|..+... ..+++|..||+...+|+||++|++||||+||++|| +.|. ++++|..||+|||.||
T Consensus 24 ~~~p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na 101 (311)
T 2r0y_A 24 WHIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNC 101 (311)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHH
Confidence 33456677777777777653 35789999999999999999999999999999999 5555 8999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q 048123 131 MHFNASDTVYYRQAHAMKELANKLFRTL 158 (202)
Q Consensus 131 ~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 158 (202)
++||+++|.++.+|..|+..|.+.|.+.
T Consensus 102 ~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 102 QAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999887765
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=141.68 Aligned_cols=101 Identities=16% Similarity=0.301 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHHHcCCC------cccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 048123 57 MPERKMLDLLLDRLKRRDS------YKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNA 130 (202)
Q Consensus 57 ~~~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 130 (202)
...+.++..|++.|..+.. +.+|...|+.. |+||. +.||+|.+|++||..+.|.++++|..||.+||+||
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NA 81 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4467888999999988643 57999999887 89998 99999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 048123 131 MHFNASDTVYYRQAHAMKELANKLFRTLKND 161 (202)
Q Consensus 131 ~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~ 161 (202)
++||.++|.||.+|..|+..|.+..+++...
T Consensus 82 r~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 82 RRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998655
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.68 E-value=1.3e-16 Score=125.82 Aligned_cols=93 Identities=15% Similarity=0.243 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCcCCccchHhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q 048123 59 ERKMLDLLLDRLKRRDSYKIFAKPVDGTEVEDYYKVIKHPMDLSKITEKLNEGSYQTLGDFEHDIYLMLKNAMHFNASDT 138 (202)
Q Consensus 59 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iI~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 138 (202)
+...+..||..|..++.+++|.... ++.||||.+|++||+++.|.|+.+|+.||.|||+||..||.+++
T Consensus 76 l~~~l~~vl~~L~~~~~s~~~~~y~-----------~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~ 144 (183)
T 3lqh_A 76 LQISLKQVLTALLNSRTTSHLLRYR-----------QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQP 144 (183)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHTCC-----------C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhccccHhhhhhh-----------hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCh
Confidence 3456889999999999999998732 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCC
Q 048123 139 VYYRQAHAMKELANKLFRTLKNDP 162 (202)
Q Consensus 139 ~~~~~A~~L~~~~~~~~~~~~~~~ 162 (202)
++.+++..|+.+|.++++++..-.
T Consensus 145 e~~~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 145 EIKKANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hhhhhhhHHHHHHHHHHHHHCCCC
Confidence 999999999999999999986543
No 43
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=51.81 E-value=17 Score=24.34 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 048123 101 LSKITEKLNEGSYQTLGDFEHDIYLMLKNA 130 (202)
Q Consensus 101 L~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 130 (202)
..-|...+..|.|.|..+++.|.-..+..-
T Consensus 15 ~~~i~~~V~sG~Y~s~SEviR~~lR~l~~r 44 (88)
T 3kxe_C 15 QAFIDSQVADGRYGSASEVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHHTTTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356889999999999999999987777653
No 44
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=42.08 E-value=13 Score=18.05 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHH
Q 048123 113 YQTLGDFEHDIYLML 127 (202)
Q Consensus 113 Y~s~~~f~~Dv~li~ 127 (202)
-.|++.|+.|+++|-
T Consensus 7 vDSV~rWmeDLr~MT 21 (22)
T 3ro3_B 7 VDSVQRWMEDLKLMT 21 (26)
T ss_pred hHHHHHHHHHHHhhc
Confidence 357889999999873
No 45
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=23.92 E-value=69 Score=23.18 Aligned_cols=30 Identities=17% Similarity=0.499 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Q 048123 102 SKITEKLNEGSYQTLGDFEHDIYLMLKNAM 131 (202)
Q Consensus 102 ~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 131 (202)
..|..+|....+.|+++|-..+.+-+.|--
T Consensus 36 ~~IAdkLRGr~F~sFd~FR~afW~eVs~Dp 65 (134)
T 1fr2_B 36 DRIADKLRDKEFKSFDDFRKAVWEEVSKDP 65 (134)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHhcCH
Confidence 578999999999999999999887766543
No 46
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=23.91 E-value=70 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Q 048123 102 SKITEKLNEGSYQTLGDFEHDIYLMLKNAM 131 (202)
Q Consensus 102 ~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 131 (202)
..|..+|....+.|+++|-..+.+-+.|--
T Consensus 33 ~qIAdkLRGr~F~sFd~FR~afW~eVs~Dp 62 (131)
T 2jb0_B 33 DRIANKLRDKEFKSFDDFRKKFWEEVSKDP 62 (131)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHcCCcCCCHHHHHHHHHHHHhcCH
Confidence 579999999999999999999887766543
Done!