Query 048125
Match_columns 258
No_of_seqs 130 out of 2194
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 11:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-33 6E-38 225.2 15.1 244 2-257 55-302 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.5E-32 5.2E-37 244.1 18.9 247 2-258 399-716 (768)
3 3rgz_A Protein brassinosteroid 100.0 1.8E-31 6E-36 237.3 19.0 248 2-258 373-692 (768)
4 3v47_A TOLL-like receptor 5B a 100.0 2.9E-31 1E-35 222.9 17.2 131 127-258 277-407 (455)
5 3v47_A TOLL-like receptor 5B a 100.0 1.2E-30 4.2E-35 219.1 20.2 248 2-258 35-383 (455)
6 2z66_A Variable lymphocyte rec 100.0 1.1E-30 3.9E-35 208.4 17.4 243 2-258 12-260 (306)
7 2id5_A Lingo-1, leucine rich r 100.0 4E-30 1.4E-34 217.2 19.4 248 2-258 61-332 (477)
8 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-30 8.2E-35 207.1 16.4 226 22-258 50-280 (313)
9 4fcg_A Uncharacterized protein 100.0 1.9E-29 6.4E-34 203.1 20.8 225 21-257 80-312 (328)
10 1xku_A Decorin; proteoglycan, 100.0 3.9E-29 1.4E-33 201.5 21.3 241 2-258 57-305 (330)
11 2id5_A Lingo-1, leucine rich r 100.0 1.3E-29 4.4E-34 214.1 18.3 247 2-258 37-308 (477)
12 3zyj_A Leucine-rich repeat-con 100.0 5.2E-29 1.8E-33 208.3 20.0 241 3-258 49-291 (440)
13 3t6q_A CD180 antigen; protein- 100.0 3.2E-29 1.1E-33 217.6 18.6 253 2-258 283-559 (606)
14 3zyi_A Leucine-rich repeat-con 100.0 5.8E-29 2E-33 208.7 19.3 241 3-258 60-302 (452)
15 3o6n_A APL1; leucine-rich repe 100.0 4.9E-29 1.7E-33 205.4 17.4 240 3-257 51-350 (390)
16 4eco_A Uncharacterized protein 100.0 1.5E-29 5E-34 220.5 14.9 208 38-257 198-444 (636)
17 3t6q_A CD180 antigen; protein- 100.0 1.3E-28 4.6E-33 213.7 20.3 247 2-258 259-512 (606)
18 2ft3_A Biglycan; proteoglycan, 100.0 8.4E-29 2.9E-33 199.8 17.7 239 2-257 59-305 (332)
19 1xku_A Decorin; proteoglycan, 100.0 2.1E-28 7.3E-33 197.3 19.9 237 2-258 36-275 (330)
20 4fcg_A Uncharacterized protein 100.0 1.2E-28 4.1E-33 198.4 17.9 227 2-234 86-314 (328)
21 3o6n_A APL1; leucine-rich repe 100.0 1.5E-28 5.2E-33 202.5 18.3 219 2-236 74-354 (390)
22 2ft3_A Biglycan; proteoglycan, 100.0 2E-28 7E-33 197.5 17.0 236 2-258 38-276 (332)
23 3oja_B Anopheles plasmodium-re 100.0 2.1E-28 7.3E-33 211.9 17.4 125 4-137 58-183 (597)
24 2z80_A TOLL-like receptor 2, v 100.0 6.2E-29 2.1E-33 202.2 12.8 241 4-258 38-313 (353)
25 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-28 4.7E-33 213.6 15.0 246 3-258 291-557 (606)
26 4eco_A Uncharacterized protein 100.0 2.7E-28 9.3E-33 212.5 15.4 246 2-258 310-599 (636)
27 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-27 7.1E-32 187.6 18.6 220 3-234 17-238 (285)
28 3oja_B Anopheles plasmodium-re 100.0 9.5E-28 3.3E-32 207.8 18.0 241 2-258 80-357 (597)
29 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-27 6E-32 203.1 19.2 103 2-113 26-128 (520)
30 2z66_A Variable lymphocyte rec 100.0 4.5E-28 1.5E-32 193.4 14.2 227 2-236 33-263 (306)
31 1ozn_A Reticulon 4 receptor; N 100.0 2.9E-27 1E-31 186.8 17.9 222 25-258 14-237 (285)
32 3o53_A Protein LRIM1, AGAP0063 100.0 2.5E-28 8.5E-33 195.7 11.8 233 3-258 16-249 (317)
33 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-27 6E-32 206.6 17.9 245 5-258 270-533 (606)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-27 1.4E-31 202.6 19.4 103 2-113 57-159 (562)
35 3j0a_A TOLL-like receptor 5; m 100.0 4.2E-27 1.4E-31 211.1 19.9 250 2-258 53-374 (844)
36 4ecn_A Leucine-rich repeat pro 100.0 1.1E-27 3.8E-32 213.1 15.8 151 100-258 548-709 (876)
37 3zyj_A Leucine-rich repeat-con 100.0 5.1E-27 1.7E-31 196.3 18.9 223 2-234 69-292 (440)
38 3zyi_A Leucine-rich repeat-con 99.9 6.5E-27 2.2E-31 196.3 18.3 224 1-234 79-303 (452)
39 1ziw_A TOLL-like receptor 3; i 99.9 6.3E-27 2.1E-31 205.7 19.0 246 2-257 30-340 (680)
40 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-27 9.9E-32 201.8 16.4 123 1-138 4-128 (520)
41 3j0a_A TOLL-like receptor 5; m 99.9 6.5E-27 2.2E-31 209.9 19.0 251 1-258 77-393 (844)
42 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-26 4.7E-31 203.6 18.9 203 48-258 383-621 (680)
43 4fmz_A Internalin; leucine ric 99.9 1.8E-26 6E-31 187.3 18.0 240 2-258 93-345 (347)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-26 6E-31 198.7 18.6 122 2-138 36-159 (562)
45 2z63_A TOLL-like receptor 4, v 99.9 1.8E-26 6E-31 198.9 18.0 239 9-258 270-530 (570)
46 4fmz_A Internalin; leucine ric 99.9 3.8E-26 1.3E-30 185.3 18.7 240 1-258 70-323 (347)
47 4ecn_A Leucine-rich repeat pro 99.9 2.2E-26 7.6E-31 204.8 18.1 245 2-258 553-839 (876)
48 2z81_A CD282 antigen, TOLL-lik 99.9 8.4E-27 2.9E-31 200.1 14.3 81 2-83 31-112 (549)
49 1wwl_A Monocyte differentiatio 99.9 1.7E-27 5.7E-32 190.5 8.6 236 3-258 49-308 (312)
50 2z80_A TOLL-like receptor 2, v 99.9 4.3E-27 1.5E-31 191.3 10.8 229 1-238 56-318 (353)
51 3oja_A Leucine-rich immune mol 99.9 1.9E-26 6.4E-31 194.9 14.3 216 21-258 33-249 (487)
52 4g8a_A TOLL-like receptor 4; l 99.9 3E-25 1E-29 193.3 21.1 111 147-258 467-579 (635)
53 4g8a_A TOLL-like receptor 4; l 99.9 4.2E-25 1.4E-29 192.4 19.9 92 166-258 462-554 (635)
54 3o53_A Protein LRIM1, AGAP0063 99.9 5.1E-27 1.8E-31 188.1 6.5 231 1-254 38-270 (317)
55 1o6v_A Internalin A; bacterial 99.9 9E-25 3.1E-29 184.0 20.0 77 2-84 73-149 (466)
56 2o6q_A Variable lymphocyte rec 99.9 1.9E-24 6.5E-29 169.3 19.8 202 22-234 16-218 (270)
57 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-25 5.3E-30 192.3 14.3 173 3-187 11-210 (549)
58 2z62_A TOLL-like receptor 4, v 99.9 4.7E-25 1.6E-29 173.3 15.9 221 4-237 14-240 (276)
59 2z63_A TOLL-like receptor 4, v 99.9 3.7E-25 1.3E-29 190.7 16.6 231 24-258 259-506 (570)
60 1p9a_G Platelet glycoprotein I 99.9 1.5E-24 5.1E-29 171.5 18.5 202 18-234 6-208 (290)
61 3oja_A Leucine-rich immune mol 99.9 4.6E-26 1.6E-30 192.5 9.4 231 1-254 38-270 (487)
62 2z62_A TOLL-like receptor 4, v 99.9 8.9E-25 3E-29 171.8 15.5 220 26-258 11-236 (276)
63 1wwl_A Monocyte differentiatio 99.9 1.5E-25 5.3E-30 179.1 10.9 222 2-235 68-310 (312)
64 1o6v_A Internalin A; bacterial 99.9 1E-23 3.4E-28 177.6 19.9 231 2-258 51-321 (466)
65 2o6q_A Variable lymphocyte rec 99.9 2.3E-23 7.9E-28 163.2 20.4 197 2-210 21-218 (270)
66 3rfs_A Internalin B, repeat mo 99.9 2.1E-24 7.1E-29 169.3 14.2 210 20-247 39-248 (272)
67 3goz_A Leucine-rich repeat-con 99.9 1.4E-26 5E-31 188.8 0.3 252 2-258 3-296 (362)
68 3bz5_A Internalin-J, INLJ; leu 99.9 4.4E-23 1.5E-27 172.9 20.8 201 2-235 47-247 (457)
69 1p9a_G Platelet glycoprotein I 99.9 2.1E-23 7.1E-28 164.9 17.4 194 2-210 15-208 (290)
70 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-23 9.5E-28 174.1 18.7 179 1-210 68-246 (457)
71 2ca6_A RAN GTPase-activating p 99.9 1E-25 3.4E-30 185.4 2.5 242 12-258 23-315 (386)
72 2xwt_C Thyrotropin receptor; s 99.9 4.4E-23 1.5E-27 158.7 16.8 197 46-257 31-237 (239)
73 3g06_A SSPH2 (leucine-rich rep 99.9 2E-22 6.7E-27 174.1 21.3 224 2-258 45-296 (622)
74 3rfs_A Internalin B, repeat mo 99.9 1.6E-23 5.6E-28 164.2 12.6 201 23-236 20-220 (272)
75 2xwt_C Thyrotropin receptor; s 99.9 1.3E-22 4.5E-27 156.0 17.1 205 9-232 23-237 (239)
76 4glp_A Monocyte differentiatio 99.9 2.2E-23 7.4E-28 166.5 12.4 227 21-258 63-306 (310)
77 1z7x_W Ribonuclease inhibitor; 99.9 3E-26 1E-30 192.6 -4.6 206 2-210 61-297 (461)
78 1z7x_W Ribonuclease inhibitor; 99.9 2E-26 7E-31 193.7 -6.1 255 2-258 90-410 (461)
79 1jl5_A Outer protein YOPM; leu 99.9 1.1E-22 3.6E-27 170.4 13.3 232 1-257 15-268 (454)
80 3m19_A Variable lymphocyte rec 99.9 8E-22 2.7E-26 152.7 15.7 181 46-236 14-194 (251)
81 1h6u_A Internalin H; cell adhe 99.9 3.7E-22 1.3E-26 159.1 14.1 193 20-235 39-231 (308)
82 1h6u_A Internalin H; cell adhe 99.9 2.8E-22 9.7E-27 159.8 13.2 206 27-258 24-229 (308)
83 4glp_A Monocyte differentiatio 99.9 2.2E-22 7.5E-27 160.7 11.6 202 21-235 90-308 (310)
84 2ast_B S-phase kinase-associat 99.9 1.9E-23 6.6E-28 168.6 5.0 201 22-231 70-282 (336)
85 2ast_B S-phase kinase-associat 99.9 7.1E-24 2.4E-28 171.1 1.7 203 46-256 70-282 (336)
86 1jl5_A Outer protein YOPM; leu 99.9 4E-21 1.4E-25 160.9 18.3 232 1-258 135-408 (454)
87 3m19_A Variable lymphocyte rec 99.9 5.4E-21 1.9E-25 148.1 16.6 180 22-212 14-194 (251)
88 4ay9_X Follicle-stimulating ho 99.9 4.6E-21 1.6E-25 155.5 14.9 236 3-256 15-256 (350)
89 2ca6_A RAN GTPase-activating p 99.9 7.7E-24 2.6E-28 174.1 -2.7 232 2-237 37-319 (386)
90 3goz_A Leucine-rich repeat-con 99.9 7.1E-23 2.4E-27 167.0 1.9 233 1-236 26-299 (362)
91 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-20 1.1E-24 160.2 16.2 210 2-243 66-306 (622)
92 2o6s_A Variable lymphocyte rec 99.8 7.4E-20 2.5E-24 137.7 13.1 180 25-222 10-190 (208)
93 2v9t_B SLIT homolog 2 protein 99.8 9.6E-20 3.3E-24 138.2 13.4 134 100-234 32-165 (220)
94 2o6s_A Variable lymphocyte rec 99.8 2.9E-19 1E-23 134.4 15.4 181 49-246 10-190 (208)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 8.1E-20 2.8E-24 138.6 12.3 155 71-235 13-167 (220)
96 3cvr_A Invasion plasmid antige 99.8 3.2E-19 1.1E-23 152.4 15.3 188 23-245 60-254 (571)
97 3cvr_A Invasion plasmid antige 99.8 9.3E-19 3.2E-23 149.6 17.7 177 46-258 59-242 (571)
98 3e6j_A Variable lymphocyte rec 99.8 5.2E-19 1.8E-23 135.0 14.2 133 100-234 40-172 (229)
99 1h6t_A Internalin B; cell adhe 99.8 4.8E-19 1.6E-23 140.0 12.4 171 20-211 44-214 (291)
100 4ay9_X Follicle-stimulating ho 99.8 3.4E-18 1.2E-22 138.7 17.5 216 25-253 12-233 (350)
101 1h6t_A Internalin B; cell adhe 99.8 5.1E-19 1.8E-23 139.8 11.9 189 24-235 26-214 (291)
102 2xot_A Amphoterin-induced prot 99.8 6.3E-19 2.2E-23 143.5 12.1 176 49-234 21-202 (361)
103 4ezg_A Putative uncharacterize 99.8 8.6E-19 2.9E-23 130.7 11.7 150 99-258 43-193 (197)
104 1m9s_A Internalin B; cell inva 99.8 1.8E-18 6.1E-23 149.2 13.9 172 20-212 41-212 (605)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 4.5E-18 1.5E-22 129.0 14.0 154 49-211 14-167 (220)
106 1m9s_A Internalin B; cell inva 99.8 8.3E-19 2.8E-23 151.3 10.9 190 24-236 23-212 (605)
107 4ezg_A Putative uncharacterize 99.8 3.1E-18 1E-22 127.7 11.1 105 126-234 89-194 (197)
108 2v9t_B SLIT homolog 2 protein 99.8 6.9E-18 2.4E-22 127.9 13.1 152 49-210 14-165 (220)
109 2xot_A Amphoterin-induced prot 99.7 1.7E-17 5.9E-22 135.1 13.7 179 70-258 19-201 (361)
110 1xeu_A Internalin C; cellular 99.7 1.2E-18 4.3E-23 135.6 6.5 170 21-212 18-187 (263)
111 3e6j_A Variable lymphocyte rec 99.7 4.8E-17 1.6E-21 124.1 13.9 154 47-211 20-173 (229)
112 3ogk_B Coronatine-insensitive 99.7 3.4E-19 1.2E-23 154.2 1.7 247 2-258 197-525 (592)
113 1w8a_A SLIT protein; signaling 99.7 3.9E-17 1.3E-21 121.2 12.4 131 103-237 11-142 (192)
114 1xeu_A Internalin C; cellular 99.7 5.6E-18 1.9E-22 131.9 6.6 171 44-236 17-187 (263)
115 1dce_A Protein (RAB geranylger 99.7 2.3E-20 8E-25 159.9 -7.8 204 43-253 346-567 (567)
116 3ogk_B Coronatine-insensitive 99.7 6.2E-19 2.1E-23 152.5 0.0 157 96-253 374-545 (592)
117 2wfh_A SLIT homolog 2 protein 99.7 2.6E-16 8.9E-21 116.7 12.0 127 103-234 13-139 (193)
118 3sb4_A Hypothetical leucine ri 99.7 1.2E-16 4E-21 128.5 10.6 227 12-252 83-327 (329)
119 2ell_A Acidic leucine-rich nuc 99.7 6.8E-17 2.3E-21 117.3 8.1 138 98-239 22-164 (168)
120 1w8a_A SLIT protein; signaling 99.7 3.9E-16 1.3E-20 115.7 11.8 132 71-212 10-141 (192)
121 2p1m_B Transport inhibitor res 99.7 5.2E-19 1.8E-23 153.0 -4.4 183 67-258 287-518 (594)
122 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.4E-24 155.3 -8.8 177 66-258 346-545 (567)
123 2o6r_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 112.7 12.4 132 102-237 9-140 (177)
124 2ell_A Acidic leucine-rich nuc 99.7 4.2E-16 1.4E-20 113.1 10.6 130 125-257 24-158 (168)
125 2je0_A Acidic leucine-rich nuc 99.7 9.4E-17 3.2E-21 114.2 6.0 128 125-255 17-149 (149)
126 4fdw_A Leucine rich hypothetic 99.7 5.2E-15 1.8E-19 121.7 17.1 153 95-255 221-379 (401)
127 2p1m_B Transport inhibitor res 99.7 1.8E-18 6E-23 149.7 -4.1 79 2-80 110-195 (594)
128 4b8c_D Glucose-repressible alc 99.6 2.8E-17 9.4E-22 145.0 2.4 139 65-215 220-359 (727)
129 4fdw_A Leucine rich hypothetic 99.6 1.6E-14 5.4E-19 118.8 18.3 227 9-257 124-356 (401)
130 2wfh_A SLIT homolog 2 protein 99.6 2.1E-15 7E-20 111.9 11.5 128 71-210 12-139 (193)
131 4b8c_D Glucose-repressible alc 99.6 5.1E-17 1.7E-21 143.3 3.0 184 46-239 173-359 (727)
132 2o6r_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 109.3 12.0 132 70-212 8-139 (177)
133 3sb4_A Hypothetical leucine ri 99.6 8.8E-15 3E-19 117.5 13.6 216 2-228 106-328 (329)
134 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 107.6 6.7 130 98-230 15-149 (149)
135 1a9n_A U2A', U2A'; complex (nu 99.6 2E-15 6.9E-20 110.3 7.3 135 95-235 14-154 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 3.1E-15 1.1E-19 109.3 7.5 126 126-257 20-151 (176)
137 3g39_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 101.3 9.9 107 126-235 10-116 (170)
138 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5E-21 118.7 -5.9 112 95-212 43-155 (198)
139 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 100.1 10.0 105 127-234 14-118 (174)
140 3g39_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 97.8 10.6 107 101-211 10-116 (170)
141 1ds9_A Outer arm dynein; leuci 99.5 2.7E-15 9.4E-20 111.7 -1.5 131 21-163 17-154 (198)
142 2r9u_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 96.5 10.6 106 102-211 14-119 (174)
143 3un9_A NLR family member X1; l 99.4 3.4E-15 1.2E-19 121.6 -3.0 165 69-236 72-254 (372)
144 3un9_A NLR family member X1; l 99.4 1.1E-14 3.9E-19 118.5 -2.6 159 99-258 71-251 (372)
145 2ifg_A High affinity nerve gro 99.3 1.4E-11 4.9E-16 99.5 9.2 105 128-235 11-117 (347)
146 4gt6_A Cell surface protein; l 99.3 3.1E-10 1.1E-14 93.3 16.6 108 144-256 260-367 (394)
147 4fs7_A Uncharacterized protein 99.2 4E-10 1.4E-14 92.6 15.4 101 144-250 292-392 (394)
148 2ifg_A High affinity nerve gro 99.2 4.6E-11 1.6E-15 96.5 9.4 104 103-210 11-116 (347)
149 4fs7_A Uncharacterized protein 99.1 1.8E-09 6.2E-14 88.7 15.3 223 13-255 153-375 (394)
150 4gt6_A Cell surface protein; l 99.1 6.5E-09 2.2E-13 85.4 17.2 124 125-256 265-388 (394)
151 2ra8_A Uncharacterized protein 99.1 9.8E-11 3.3E-15 94.8 4.4 156 95-256 167-340 (362)
152 2ra8_A Uncharacterized protein 99.0 2.4E-10 8.3E-15 92.5 6.4 159 95-258 134-319 (362)
153 4h09_A Hypothetical leucine ri 99.0 4.5E-08 1.5E-12 79.9 18.6 106 144-253 235-340 (379)
154 1io0_A Tropomodulin; LRR prote 98.8 4.4E-10 1.5E-14 82.5 -0.4 110 125-234 36-164 (185)
155 4h09_A Hypothetical leucine ri 98.7 2.7E-06 9.1E-11 69.3 18.2 117 125-245 240-356 (379)
156 3e4g_A ATP synthase subunit S, 98.7 5.7E-09 1.9E-13 75.0 1.9 106 148-253 60-175 (176)
157 3e4g_A ATP synthase subunit S, 98.6 9E-09 3.1E-13 73.9 1.9 83 126-208 62-150 (176)
158 1io0_A Tropomodulin; LRR prote 98.5 6.7E-09 2.3E-13 76.1 -0.7 16 194-209 148-163 (185)
159 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.7E-11 67.8 3.9 79 171-252 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.6E-06 5.4E-11 66.8 4.3 81 147-228 168-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 1.8E-06 6.1E-11 63.2 -0.4 81 126-206 42-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 1.5E-05 5.3E-10 58.2 0.1 10 46-55 41-50 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00082 2.8E-08 45.7 5.5 56 177-234 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0032 1.1E-07 42.7 4.6 55 26-82 12-68 (130)
165 2lz0_A Uncharacterized protein 89.6 0.78 2.7E-05 29.2 5.1 47 8-56 7-53 (100)
166 2lz0_A Uncharacterized protein 84.6 4.2 0.00014 25.7 6.4 39 143-182 14-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-33 Score=225.24 Aligned_cols=244 Identities=28% Similarity=0.428 Sum_probs=213.7
Q ss_pred CCCCcCcccC--CCCcchhccCCCCceEEecC-CcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEec
Q 048125 2 FDFPFNQLQG--SLPSDLGFTLPNLEGLNLAG-NQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIIS 77 (258)
Q Consensus 2 l~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 77 (258)
|+++++.+++ .+|..+. ++++|++|++.+ +.+.+..|..+.++++|++|++++|.+....+ .+..+++|++|+++
T Consensus 55 L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 5678889988 7888777 599999999995 88888889999999999999999999974444 48899999999999
Q ss_pred cccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEee
Q 048125 78 QNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLS 157 (258)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 157 (258)
+|.++. ..+..+..+++|++|++++|.+.+.+|..++.+.+.++.|++++|.+....|..+..++ |++|+++
T Consensus 134 ~N~l~~-------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 134 YNALSG-------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp SSEEES-------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCccCC-------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 999876 44557888999999999999998788888887755899999999988767788887776 9999999
Q ss_pred CCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125 158 GNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 237 (258)
+|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|++++.+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 9999888888899999999999999999865554 788899999999999999889999999999999999999999888
Q ss_pred ccccccccCcceeEecCCCC
Q 048125 238 PSEVIGLSSLSIYLDLSQNQ 257 (258)
Q Consensus 238 ~~~~~~~~~l~~~L~l~~n~ 257 (258)
|.. ..++++ +++++++|+
T Consensus 285 p~~-~~l~~L-~~l~l~~N~ 302 (313)
T 1ogq_A 285 PQG-GNLQRF-DVSAYANNK 302 (313)
T ss_dssp CCS-TTGGGS-CGGGTCSSS
T ss_pred CCC-cccccc-ChHHhcCCC
Confidence 876 788999 999999987
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-32 Score=244.08 Aligned_cols=247 Identities=33% Similarity=0.563 Sum_probs=201.6
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
|++.+|.+++.+|..+. ++++|++|++.+|.+++..|..+.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 399 L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 45667777767777666 478888888888887777777788888888888888887754444 7777888888888887
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ 160 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 160 (258)
+++ ..+..+..+++|++|++++|.+.+.+|..++.+ ++++.|++++|.+...+|..+..+++|++|++++|.
T Consensus 478 l~~-------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 478 LTG-------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCS-------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ccC-------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 775 345567788889999999998887888777766 489999999988877788888888899999999887
Q ss_pred cccccCC----------------------------------------------------------------------ccc
Q 048125 161 FTSRIPG----------------------------------------------------------------------SIG 170 (258)
Q Consensus 161 ~~~~~~~----------------------------------------------------------------------~~~ 170 (258)
+.+..|. .+.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 7644332 233
Q ss_pred CccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCccee
Q 048125 171 DLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIY 250 (258)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~ 250 (258)
.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..++.| ++
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L-~~ 708 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML-TE 708 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC-SE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-CE
Confidence 45778899999999998899999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EecCCCCC
Q 048125 251 LDLSQNQL 258 (258)
Q Consensus 251 L~l~~n~~ 258 (258)
|||++|++
T Consensus 709 L~ls~N~l 716 (768)
T 3rgz_A 709 IDLSNNNL 716 (768)
T ss_dssp EECCSSEE
T ss_pred EECcCCcc
Confidence 99999864
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=1.8e-31 Score=237.25 Aligned_cols=248 Identities=38% Similarity=0.578 Sum_probs=205.2
Q ss_pred CCCCcCcccCCCCcchhcc-CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc
Q 048125 2 FDFPFNQLQGSLPSDLGFT-LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN 79 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 79 (258)
|++++|.+++.+|..+... +++|++|++.+|.+++..|..+.++++|++|++++|.+....+. +..+++|+.|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 4455555555555544421 56677777777777777777788888888888888887654444 778888888888888
Q ss_pred cccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125 80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN 159 (258)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 159 (258)
.+.. .++..+..+++|+.|++++|.+.+..|..+..+ ++++.|++++|.+...+|.+++.+++|++|++++|
T Consensus 453 ~l~~-------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 453 MLEG-------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp CCCS-------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cccC-------cCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 8775 455577888999999999999987888877766 58999999999998788999999999999999999
Q ss_pred ccccccCCcccCccCCcEEEecCCccccccCC------------------------------------------------
Q 048125 160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS------------------------------------------------ 191 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------------------------------------ 191 (258)
.+.+..|..+..+++|+.|++++|.+.+.+|.
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 99888899999999999999999987754443
Q ss_pred ----------------------CCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcce
Q 048125 192 ----------------------SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSI 249 (258)
Q Consensus 192 ----------------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~ 249 (258)
.++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..++.| +
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L-~ 683 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL-N 683 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-C
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC-C
Confidence 34456789999999999999999999999999999999999999999999999999 9
Q ss_pred eEecCCCCC
Q 048125 250 YLDLSQNQL 258 (258)
Q Consensus 250 ~L~l~~n~~ 258 (258)
+|||++|.+
T Consensus 684 ~LdLs~N~l 692 (768)
T 3rgz_A 684 ILDLSSNKL 692 (768)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcc
Confidence 999999975
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.9e-31 Score=222.88 Aligned_cols=131 Identities=22% Similarity=0.178 Sum_probs=89.3
Q ss_pred cceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccc
Q 048125 127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAE 206 (258)
Q Consensus 127 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 206 (258)
++.|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 33333333333333455566667777777777777766666777777777777777777666666777777777777777
Q ss_pred ccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 207 NMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 207 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
|.+.+..|..+..+++|++|++++|++++..+..+..++++ ++|+|++|++
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l 407 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPW 407 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCB
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCcc-cEEEccCCCc
Confidence 77776667777777777777777777775444456677777 7777777764
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.2e-30 Score=219.11 Aligned_cols=248 Identities=22% Similarity=0.247 Sum_probs=169.9
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCccccc-ccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEeccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGP-IPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQN 79 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 79 (258)
|++++|.+++..|..+. ++++|++|++.+|.+.+. .+..|.++++|++|++++|.+....+ .+..+++|++|++++|
T Consensus 35 L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 35 VDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp EECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred EEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 56777777744455444 577788888877766533 34567777777777777777766543 3677777777777777
Q ss_pred cccCcCCCccchhhhc--cccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCC----------
Q 048125 80 HLGNYGEKDNLEFVNS--LVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRN---------- 147 (258)
Q Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~---------- 147 (258)
.+++ ..+.. +..+++|++|++++|.+.+..|..+....+++++|++++|.+....+..+..
T Consensus 114 ~l~~-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 114 NLDG-------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp CCBT-------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred CCCc-------cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 7654 11222 4455556666665555553334332222234555555555443222221111
Q ss_pred --------------------------------------------------------------------------------
Q 048125 148 -------------------------------------------------------------------------------- 147 (258)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (258)
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence
Q ss_pred -------CCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccC
Q 048125 148 -------LVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKC 220 (258)
Q Consensus 148 -------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 220 (258)
.++|+++++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 1355666666666665567778888899999999999887778888899999999999999987778888889
Q ss_pred cCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 221 QNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 221 ~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
++|+.|++++|++++..+..+..++.| ++|++++|.+
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l 383 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNL-KELALDTNQL 383 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCC
T ss_pred ccCCEEECCCCcccccChhhccccccc-cEEECCCCcc
Confidence 999999999999987778888899999 9999999875
No 6
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-30 Score=208.42 Aligned_cols=243 Identities=22% Similarity=0.267 Sum_probs=206.6
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCC---CCccccCCcceEEecc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV---PSLENLHKLQRVIISQ 78 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~ 78 (258)
++..++.++ .+|..+ .++|++|++.++.++...+..|.++++|++|++++|.+.... ..+..+++|++|++++
T Consensus 12 l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 12 IRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 456677788 888755 468999999999998655556889999999999999987542 3356789999999999
Q ss_pred ccccCcCCCccchhhhccccCCCCcEEEeeccccccccc-ccccccccccceEEecccccCCccCccCCCCCcccEEEee
Q 048125 79 NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLP-EAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLS 157 (258)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 157 (258)
|.+.. ++..+..+++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+....+..+..+++|++|+++
T Consensus 88 n~i~~--------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 88 NGVIT--------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CSEEE--------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred Ccccc--------ChhhcCCCCCCCEEECCCCcccccccchhhhhc-cCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 98873 44467889999999999999874433 234444 689999999998876777888889999999999
Q ss_pred CCcccc-ccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125 158 GNQFTS-RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 158 ~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
+|.+.+ ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++.
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 999975 5788899999999999999999987788999999999999999999877777888899999999999999988
Q ss_pred ccccccccc-CcceeEecCCCCC
Q 048125 237 IPSEVIGLS-SLSIYLDLSQNQL 258 (258)
Q Consensus 237 ~~~~~~~~~-~l~~~L~l~~n~~ 258 (258)
.+..+..++ ++ ++|++++|++
T Consensus 239 ~~~~~~~~~~~L-~~L~L~~N~~ 260 (306)
T 2z66_A 239 KKQELQHFPSSL-AFLNLTQNDF 260 (306)
T ss_dssp SSSSCCCCCTTC-CEEECTTCCE
T ss_pred CHHHHHhhhccC-CEEEccCCCe
Confidence 888898886 78 9999999975
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=217.22 Aligned_cols=248 Identities=21% Similarity=0.208 Sum_probs=171.2
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
|++++|.+++..|..+. ++++|++|++.+|.++...+..|.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 61 L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 61 LELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp EECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred EECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 56677777744455444 577888888877777765555667777777777777777655443 6677777777777776
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccc-----------------------ccccceEEeccccc
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF-----------------------STRLGILSVAENQL 137 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------------------~~~l~~L~l~~~~~ 137 (258)
+..... ..+..+++|+.|++++|.+.+..+..+..+ .++++.|++++|..
T Consensus 140 l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 140 LVYISH-------RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp CCEECT-------TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred cceeCh-------hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 654322 234455555555555555542222222222 13444444444433
Q ss_pred CCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCccc
Q 048125 138 FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSL 217 (258)
Q Consensus 138 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 217 (258)
...++.......+|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 33333333333466677777777764444567888999999999999987777788999999999999999988888889
Q ss_pred ccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 218 GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 218 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
..+++|+.|++++|++++..+..|..+++| ++|++++|++
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l 332 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNL-ETLILDSNPL 332 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCGGGC-CEEECCSSCE
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCCccc-CEEEccCCCc
Confidence 999999999999999996666678888999 9999999974
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.4e-30 Score=207.07 Aligned_cols=226 Identities=27% Similarity=0.443 Sum_probs=202.8
Q ss_pred CCCceEEecCCcccc--cccccccCCCCCcEEEeec-ccCCCCCC-CccccCCcceEEeccccccCcCCCccchhhhccc
Q 048125 22 PNLEGLNLAGNQFTG--PIPVSISNASNLRELMIGK-NGFSGKVP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLV 97 (258)
Q Consensus 22 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 97 (258)
.++++|++.++.+.+ .+|..+.++++|++|++++ |.+....+ .+..+++|++|++++|.++. ..+..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------AIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-------ECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-------cCCHHHh
Confidence 579999999999998 7899999999999999995 77765444 48999999999999999875 4555788
Q ss_pred cCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCC-cccEEEeeCCccccccCCcccCccCCc
Q 048125 98 NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLV-NLELLDLSGNQFTSRIPGSIGDLQKLQ 176 (258)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~ 176 (258)
.+++|++|++++|.+.+..|..+..+ ++|++|++++|.+...+|..+..++ +|++|++++|.+.+..|..+..++ |+
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 99999999999999988888888776 5999999999998867888888887 999999999999988888888887 99
Q ss_pred EEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCC
Q 048125 177 MLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN 256 (258)
Q Consensus 177 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n 256 (258)
+|++++|.+.+..|..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++++.+|..+..++.+ ++|+|++|
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-~~L~Ls~N 278 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL-HSLNVSFN 278 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTC-CEEECCSS
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCC-CEEECcCC
Confidence 999999999988889999999999999999999865555 7889999999999999999999999999999 99999999
Q ss_pred CC
Q 048125 257 QL 258 (258)
Q Consensus 257 ~~ 258 (258)
++
T Consensus 279 ~l 280 (313)
T 1ogq_A 279 NL 280 (313)
T ss_dssp EE
T ss_pred cc
Confidence 64
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.9e-29 Score=203.07 Aligned_cols=225 Identities=21% Similarity=0.260 Sum_probs=200.6
Q ss_pred CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125 21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS 100 (258)
Q Consensus 21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (258)
.+++++|++.++.++ .+|..+.++++|++|++++|.+...+..+..+++|++|++++|.++. ++..+..++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~--------lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA--------LPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC--------CCGGGGGCT
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc--------CcHHHhcCc
Confidence 478999999999998 67778888999999999999999666668999999999999998873 455688899
Q ss_pred CCcEEEeecccccccccccccc--------cccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCc
Q 048125 101 RLELLQISDNNFGGMLPEAVGN--------FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDL 172 (258)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~--------~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 172 (258)
+|++|++++|...+.+|..+.. ..++|+.|++++|.+. .+|..+..+++|++|++++|.+.+ .+..+..+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l 228 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccC
Confidence 9999999998887788876643 1368999999999988 778889999999999999999984 56678999
Q ss_pred cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEe
Q 048125 173 QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLD 252 (258)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~ 252 (258)
++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..++++ +.++
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L-~~l~ 307 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN-CIIL 307 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT-CEEE
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc-eEEe
Confidence 999999999999988999999999999999999999988999999999999999999999999999999999999 9999
Q ss_pred cCCCC
Q 048125 253 LSQNQ 257 (258)
Q Consensus 253 l~~n~ 257 (258)
+..+.
T Consensus 308 l~~~~ 312 (328)
T 4fcg_A 308 VPPHL 312 (328)
T ss_dssp CCGGG
T ss_pred CCHHH
Confidence 87653
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.9e-29 Score=201.54 Aligned_cols=241 Identities=22% Similarity=0.294 Sum_probs=144.0
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|++++|.++ .++...+.++++|++|++.+|.+++..|..|.++++|++|++++|.+...+..+. ++|++|++++|.+
T Consensus 57 L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l 133 (330)
T 1xku_A 57 LDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI 133 (330)
T ss_dssp EECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCC
T ss_pred EECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcc
Confidence 455666666 3444333356666666666666665556666666666666666666654443322 5666666666655
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeecccccc--cccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGG--MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN 159 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 159 (258)
... ....+..+++|+.|++++|.+.. ..+..+..+ ++++.|++++|.+. .+|..+. ++|++|++++|
T Consensus 134 ~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n 202 (330)
T 1xku_A 134 TKV-------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGN 202 (330)
T ss_dssp CBB-------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTS
T ss_pred ccc-------CHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCccc-cCCcccc--ccCCEEECCCC
Confidence 542 12245566777777777776542 223333333 46677777666655 3333332 56677777777
Q ss_pred ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccc
Q 048125 160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 239 (258)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+|++..+.
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence 666555666666777777777777766555556666677777777777766 5566666667777777777777643333
Q ss_pred cccc------ccCcceeEecCCCCC
Q 048125 240 EVIG------LSSLSIYLDLSQNQL 258 (258)
Q Consensus 240 ~~~~------~~~l~~~L~l~~n~~ 258 (258)
.|.. .+.+ ..|++++|++
T Consensus 282 ~f~~~~~~~~~~~l-~~l~l~~N~~ 305 (330)
T 1xku_A 282 DFCPPGYNTKKASY-SGVSLFSNPV 305 (330)
T ss_dssp SSSCSSCCTTSCCC-SEEECCSSSS
T ss_pred hcCCcccccccccc-cceEeecCcc
Confidence 3322 2445 6666666653
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=214.11 Aligned_cols=247 Identities=23% Similarity=0.223 Sum_probs=187.6
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
|++++|.+++..|.. +.++++|++|++.+|.+++..+..|.++++|++|++++|.+...+.. +..+++|++|++++|.
T Consensus 37 L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 37 LDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp EECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred EECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence 677888888433444 44689999999999988877788888899999999999988876665 7788899999999988
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ 160 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 160 (258)
+... .+..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus 116 i~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 116 IVIL-------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CCEE-------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred cccC-------ChhHccccccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 8753 23467788999999999998875555555555 589999999988875545567777888888888887
Q ss_pred cccccCCcccCccCCcEEEecCC------------------------ccccccCCCCCCCCCcceEecccccccccCCcc
Q 048125 161 FTSRIPGSIGDLQKLQMLGLNGN------------------------KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSS 216 (258)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~------------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 216 (258)
+....+..|..+++|++|++++| .+++..+..+..+++|+.|++++|.+.+..+..
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 77666666666666666666554 343222234567778888888888887666777
Q ss_pred cccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 217 LGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 217 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
+..+++|+.|++++|++.+..+..|..+++| ++|+|++|.+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l 308 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYL-RVLNVSGNQL 308 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTC-CEEECCSSCC
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccC-CEEECCCCcC
Confidence 7888888888888888887777888888888 8899888864
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=5.2e-29 Score=208.33 Aligned_cols=241 Identities=23% Similarity=0.249 Sum_probs=203.5
Q ss_pred CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc
Q 048125 3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL 81 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 81 (258)
+..+..++ .+|..+. ++++.|++.+|.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|.+
T Consensus 49 ~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 49 ICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp ECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 34556677 7887654 6899999999999988888999999999999999999876654 88999999999999999
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCc-cCccCCCCCcccEEEeeCCc
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN-IPSGLRNLVNLELLDLSGNQ 160 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 160 (258)
+.... ..+..+++|++|++++|.+. .++...+...++|+.|+++++..... .+..+..+++|++|++++|.
T Consensus 125 ~~~~~-------~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 125 TTIPN-------GAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp SSCCT-------TTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred CeeCH-------hHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 86432 25778999999999999988 44443333346999999998544333 34568889999999999999
Q ss_pred cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccc
Q 048125 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240 (258)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 240 (258)
+. ..| .+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..
T Consensus 197 l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp CS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred Cc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 98 445 4788999999999999999888899999999999999999999888889999999999999999999666677
Q ss_pred cccccCcceeEecCCCCC
Q 048125 241 VIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 241 ~~~~~~l~~~L~l~~n~~ 258 (258)
+..++.+ ++|+|++|++
T Consensus 275 ~~~l~~L-~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHL-ERIHLHHNPW 291 (440)
T ss_dssp TSSCTTC-CEEECCSSCE
T ss_pred hccccCC-CEEEcCCCCc
Confidence 8889999 9999999985
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.2e-29 Score=217.60 Aligned_cols=253 Identities=25% Similarity=0.264 Sum_probs=181.6
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCC-CCCC-ccccCCcceEEeccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPS-LENLHKLQRVIISQN 79 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~l~~L~~L~l~~~ 79 (258)
|++++|.++ .+|..+. ++++|++|++.+|.+.+..+..+.++++|++|++++|.+.. .+.. +..+++|++|++++|
T Consensus 283 L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 283 LDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp EECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred EeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 677888888 8888766 58899999999988887777778888888888888887753 2222 677778888888877
Q ss_pred cccCcCC--Cc--c---------------chhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCc
Q 048125 80 HLGNYGE--KD--N---------------LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140 (258)
Q Consensus 80 ~~~~~~~--~~--~---------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 140 (258)
.+..... .. . -..+..+..+++|++|++++|.+.+..+.......++++.|++++|.+...
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 440 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence 7654320 00 0 011223445566666666666555443433222335677777777776655
Q ss_pred cCccCCCCCcccEEEeeCCccccc---cCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCccc
Q 048125 141 IPSGLRNLVNLELLDLSGNQFTSR---IPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSL 217 (258)
Q Consensus 141 ~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 217 (258)
.+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+
T Consensus 441 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence 666677777888888888877642 23457777888888888888887777788888888888888888887778888
Q ss_pred ccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 218 GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 218 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
..+++| .|++++|++++..|..+..++.+ ++|++++|++
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~ 559 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIILPSLLPILSQQ-RTINLRQNPL 559 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCCGGGHHHHHTS-SEEECTTCCE
T ss_pred Cccccc-EEECcCCcccccCHhhcccCCCC-CEEeCCCCCc
Confidence 888888 88888888887677778888888 8999998874
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.8e-29 Score=208.74 Aligned_cols=241 Identities=22% Similarity=0.244 Sum_probs=203.3
Q ss_pred CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc
Q 048125 3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL 81 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 81 (258)
+..+..++ ++|..+ .+++++|++.+|.+++..+..|.++++|++|++++|.+....+. +.++++|++|++++|.+
T Consensus 60 ~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 60 VCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp ECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 34456677 788755 36899999999999988888999999999999999999876654 88999999999999998
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCcc-CccCCCCCcccEEEeeCCc
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNI-PSGLRNLVNLELLDLSGNQ 160 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 160 (258)
+.... ..+..+++|++|++++|.+. .++...+...++|+.|++++|.....+ +..+..+++|++|++++|.
T Consensus 136 ~~~~~-------~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 136 TVIPS-------GAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp SBCCT-------TTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CccCh-------hhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 86432 35778999999999999988 444433334469999999985443333 4568889999999999999
Q ss_pred cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccc
Q 048125 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240 (258)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 240 (258)
+.. .+ .+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..
T Consensus 208 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred ccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 984 34 5788999999999999999888889999999999999999999888888999999999999999999666677
Q ss_pred cccccCcceeEecCCCCC
Q 048125 241 VIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 241 ~~~~~~l~~~L~l~~n~~ 258 (258)
+..++++ ++|+|++|++
T Consensus 286 ~~~l~~L-~~L~L~~Np~ 302 (452)
T 3zyi_A 286 FTPLRYL-VELHLHHNPW 302 (452)
T ss_dssp STTCTTC-CEEECCSSCE
T ss_pred hccccCC-CEEEccCCCc
Confidence 8889999 9999999984
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=4.9e-29 Score=205.44 Aligned_cols=240 Identities=23% Similarity=0.260 Sum_probs=115.6
Q ss_pred CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc
Q 048125 3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL 81 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 81 (258)
++.++.++ .+|..++.++++|++|++.++.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.+
T Consensus 51 ~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 51 TFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp EEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc
Confidence 34445555 55555544566666666666665554445555666666666666665554443 45556666666666655
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCcc--------------------
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNI-------------------- 141 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-------------------- 141 (258)
+..+.. .+..+++|++|++++|.+.+..+..+..+ ++++.|++++|.+....
T Consensus 130 ~~l~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 130 SSLPRG-------IFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCCCTT-------TTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred CcCCHH-------HhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 532211 12344444444444444432222222222 23444444443332110
Q ss_pred ---------------------------------------CccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125 142 ---------------------------------------PSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182 (258)
Q Consensus 142 ---------------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 182 (258)
...+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 11233344455555555554444444455555555555555
Q ss_pred CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ 257 (258)
Q Consensus 183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~ 257 (258)
|.++ .++..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+++ .++ +..++.+ ++|++++|+
T Consensus 282 n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L-~~L~l~~N~ 350 (390)
T 3o6n_A 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL-KNLTLSHND 350 (390)
T ss_dssp SCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCC-SEEECCSSC
T ss_pred CcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhccC-CEEEcCCCC
Confidence 5544 23333444555555555555554 33444444555555555555554 222 3444555 555555554
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.5e-29 Score=220.46 Aligned_cols=208 Identities=23% Similarity=0.353 Sum_probs=126.7
Q ss_pred ccccccCCCCCcEEEeecccCCC------------------CCCCcc--ccCCcceEEeccccccCcCCCccchhhhccc
Q 048125 38 IPVSISNASNLRELMIGKNGFSG------------------KVPSLE--NLHKLQRVIISQNHLGNYGEKDNLEFVNSLV 97 (258)
Q Consensus 38 ~~~~~~~~~~L~~L~l~~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 97 (258)
+|..+.++++|++|++++|.+.. .+..+. .+++|++|++++|.+.. .++..+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-------~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-------KLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-------SCCTTTT
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-------cChHHHh
Confidence 45566677777777777777766 455565 77777777777776655 4445566
Q ss_pred cCCCCcEEEeeccc-ccc-ccccccccc-----ccccceEEecccccCCccCc--cCCCCCcccEEEeeCCccccccCCc
Q 048125 98 NASRLELLQISDNN-FGG-MLPEAVGNF-----STRLGILSVAENQLFGNIPS--GLRNLVNLELLDLSGNQFTSRIPGS 168 (258)
Q Consensus 98 ~~~~L~~L~l~~~~-~~~-~~~~~~~~~-----~~~l~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~ 168 (258)
.+++|++|++++|. +.+ .+|..++.+ .+++++|++++|.+. .+|. .+..+++|++|++++|.+.+..| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 66777777777776 555 556555443 136667777666666 5555 56666666666666666664455 5
Q ss_pred ccCccCCcEEEecCCccccccCCCCCCCCC-cceEecccccccccCCcccccCc--CCcEEeccCCccccccccccc---
Q 048125 169 IGDLQKLQMLGLNGNKFLGEIPSSIGNLTL-LMTLNFAENMLEGSIPSSLGKCQ--NLIVLDLYNNNLSGTIPSEVI--- 242 (258)
Q Consensus 169 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~--- 242 (258)
+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+...+ +|+.|++++|++.+.+|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 566666666666666665 55555655655 666666666655 4554444432 555555555555555554444
Q ss_pred ----cccCcceeEecCCCC
Q 048125 243 ----GLSSLSIYLDLSQNQ 257 (258)
Q Consensus 243 ----~~~~l~~~L~l~~n~ 257 (258)
.++++ ++|++++|.
T Consensus 427 ~~~~~~~~L-~~L~Ls~N~ 444 (636)
T 4eco_A 427 PTPFKGINV-SSINLSNNQ 444 (636)
T ss_dssp SSCCCCCCE-EEEECCSSC
T ss_pred cccccCCCC-CEEECcCCc
Confidence 44455 555555554
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.3e-28 Score=213.65 Aligned_cols=247 Identities=21% Similarity=0.246 Sum_probs=170.8
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 80 (258)
|++++|.++ .++...+.++++|++|++.+|.++ .+|..+.++++|++|++++|.+....+ .+..+++|++|++++|.
T Consensus 259 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 259 INLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred EEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 567788888 566665557999999999999988 677888999999999999999987655 48889999999999997
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccc--cccccccccccceEEecccccCCccCccCCCCCcccEEEeeC
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGML--PEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSG 158 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 158 (258)
+..... ...+..+++|++|++++|.+.+.. +..+..+ ++++.|++++|.+....+..+..+++|++|++++
T Consensus 337 ~~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 337 KRLELG------TGCLENLENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp SCCBCC------SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred cccccc------hhhhhccCcCCEEECCCCccccccCcchhcccC-CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 763111 123556777777777777665332 3334433 4677777777766555566666667777777777
Q ss_pred CccccccC-CcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccc---cCCcccccCcCCcEEeccCCccc
Q 048125 159 NQFTSRIP-GSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEG---SIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 159 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|+.|++++|+++
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 76654433 336666777777777777665556666667777777777776654 12244566666777777777766
Q ss_pred cccccccccccCcceeEecCCCCC
Q 048125 235 GTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 235 ~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
+..|..+..++.+ ++|++++|.+
T Consensus 490 ~~~~~~~~~l~~L-~~L~Ls~N~l 512 (606)
T 3t6q_A 490 SIDQHAFTSLKMM-NHVDLSHNRL 512 (606)
T ss_dssp EECTTTTTTCTTC-CEEECCSSCC
T ss_pred ccChhhhccccCC-CEEECCCCcc
Confidence 5556666666666 6777766653
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=8.4e-29 Score=199.77 Aligned_cols=239 Identities=23% Similarity=0.269 Sum_probs=117.7
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|++++|.++ .++...+.++++|++|++.+|.+++..+..|.++++|++|++++|.+...+..+. ++|++|++++|.+
T Consensus 59 L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i 135 (332)
T 2ft3_A 59 LDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRI 135 (332)
T ss_dssp EECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCC
T ss_pred EECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCcc
Confidence 344455555 2222222245555555555555554445555555555555555555544333322 4555555555555
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeecccccc--cccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGG--MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN 159 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 159 (258)
.... ...+..+++|+.|++++|.+.. ..+..+... +++.|++++|.+.. +|..+. ++|++|++++|
T Consensus 136 ~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 136 RKVP-------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp CCCC-------SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSS
T ss_pred CccC-------HhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCc-cCcccc--CCCCEEECCCC
Confidence 4321 1235556666666666665531 222222221 44444444444431 222221 35555555555
Q ss_pred ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccc
Q 048125 160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 239 (258)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+.
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence 555444455555555555555555555444445555555555666555555 4455555555555566655555533333
Q ss_pred cccc------ccCcceeEecCCCC
Q 048125 240 EVIG------LSSLSIYLDLSQNQ 257 (258)
Q Consensus 240 ~~~~------~~~l~~~L~l~~n~ 257 (258)
.|.. .+.+ ..|++++|+
T Consensus 283 ~~~~~~~~~~~~~l-~~L~l~~N~ 305 (332)
T 2ft3_A 283 DFCPVGFGVKRAYY-NGISLFNNP 305 (332)
T ss_dssp SSSCSSCCSSSCCB-SEEECCSSS
T ss_pred Hccccccccccccc-cceEeecCc
Confidence 3322 1334 555555554
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.1e-28 Score=197.26 Aligned_cols=237 Identities=24% Similarity=0.332 Sum_probs=200.2
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 80 (258)
+++.++.++ .+|..+ .+++++|++.+|.+++..+..|.++++|++|++++|.+....+ .+..+++|++|++++|.
T Consensus 36 l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 36 VQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp EECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 456677777 788755 3689999999999998777789999999999999999987744 48899999999999999
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCC--ccCccCCCCCcccEEEeeC
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFG--NIPSGLRNLVNLELLDLSG 158 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~ 158 (258)
++..+.. + .++|++|++++|.+.+..+..+..+ ++++.|++++|.+.. ..+..+..+++|++|++++
T Consensus 112 l~~l~~~--------~--~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 112 LKELPEK--------M--PKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CSBCCSS--------C--CTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CCccChh--------h--cccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 8754322 2 2789999999999885544445554 689999999998753 4566788899999999999
Q ss_pred CccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccc
Q 048125 159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP 238 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 238 (258)
|.+.. .|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++ .+|
T Consensus 181 n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 181 TNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256 (330)
T ss_dssp SCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred Ccccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence 99984 444433 78999999999999877889999999999999999999877778899999999999999999 889
Q ss_pred cccccccCcceeEecCCCCC
Q 048125 239 SEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 239 ~~~~~~~~l~~~L~l~~n~~ 258 (258)
.++..++.+ ++|++++|++
T Consensus 257 ~~l~~l~~L-~~L~l~~N~i 275 (330)
T 1xku_A 257 GGLADHKYI-QVVYLHNNNI 275 (330)
T ss_dssp TTTTTCSSC-CEEECCSSCC
T ss_pred hhhccCCCc-CEEECCCCcC
Confidence 999999999 9999999975
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.2e-28 Score=198.37 Aligned_cols=227 Identities=18% Similarity=0.228 Sum_probs=197.2
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|++++|.++ .+|..++. +++|++|++.+|.++ .+|..+.++++|++|++++|.+...+..+..+++|++|++++|.+
T Consensus 86 L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 86 LELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp EEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETT
T ss_pred EEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCC
Confidence 678899999 99998885 999999999999998 788889999999999999999997666689999999999999876
Q ss_pred cCcCCCc--cchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125 82 GNYGEKD--NLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN 159 (258)
Q Consensus 82 ~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 159 (258)
....... ...+...+..+++|++|++++|.+. .+|..+..+ ++|+.|++++|.+. .++..+..+++|++|++++|
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC-TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTC
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC-CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCC
Confidence 5422110 0011223456999999999999998 788777766 58999999999988 56667889999999999999
Q ss_pred ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 988888999999999999999999998899999999999999999999999999999999999999999987765
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-28 Score=202.49 Aligned_cols=219 Identities=20% Similarity=0.208 Sum_probs=146.1
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
|++++|.++ .++...+.++++|++|++.+|.+++..+..+.++++|++|++++|.+...+.. +..+++|++|++++|.
T Consensus 74 L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 74 LNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp EECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence 455556555 33332233466666666666666555555555566666666666655544443 3555556666665555
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeec---------------------------------------------------
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISD--------------------------------------------------- 109 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------------------------------------------------- 109 (258)
+..... ..+..+++|++|++++
T Consensus 153 l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~ 225 (390)
T 3o6n_A 153 LERIED-------DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225 (390)
T ss_dssp CCBCCT-------TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred cCccCh-------hhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence 543221 1222333333333333
Q ss_pred ----------ccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125 110 ----------NNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179 (258)
Q Consensus 110 ----------~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 179 (258)
|.+.+ . ..+..+ ++++.|++++|.+....+..+..+++|++|++++|.+.. .+..+..+++|++|+
T Consensus 226 ~~L~~L~l~~n~l~~-~-~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQHNNLTD-T-AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 301 (390)
T ss_dssp SSCCEEECCSSCCCC-C-GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred ccccEEECCCCCCcc-c-HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence 33321 1 122333 578999999998886678889999999999999999984 555667899999999
Q ss_pred ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
+++|.+. .+|..+..+++|+.|++++|.+.+. + +..+++|+.|++++|.+.+.
T Consensus 302 L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 9999998 6677788899999999999999843 3 67789999999999999853
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2e-28 Score=197.52 Aligned_cols=236 Identities=25% Similarity=0.295 Sum_probs=188.0
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
+++.++.++ .+|..+ .++|++|++.+|.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 38 l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 38 VQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp EECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred EECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 456677777 777765 35788899988888877777888888999999988888766443 7888889999998888
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCC--ccCccCCCCCcccEEEeeC
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFG--NIPSGLRNLVNLELLDLSG 158 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~ 158 (258)
++..+.. +. ++|++|++++|.+....+..+..+ ++++.|++++|.+.. ..+..+..+ +|++|++++
T Consensus 114 l~~l~~~--------~~--~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 114 LVEIPPN--------LP--SSLVELRIHDNRIRKVPKGVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp CCSCCSS--------CC--TTCCEEECCSSCCCCCCSGGGSSC-SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCccCcc--------cc--ccCCEEECCCCccCccCHhHhCCC-ccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 8754322 22 688899999888873333334444 588899998887753 345566666 888899998
Q ss_pred CccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccc
Q 048125 159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP 238 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 238 (258)
|.+.. .|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++ .+|
T Consensus 182 n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 182 AKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257 (332)
T ss_dssp SBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC
T ss_pred CCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC
Confidence 88874 444333 68999999999999777788999999999999999999777778999999999999999999 899
Q ss_pred cccccccCcceeEecCCCCC
Q 048125 239 SEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 239 ~~~~~~~~l~~~L~l~~n~~ 258 (258)
..+..++.+ ++|++++|++
T Consensus 258 ~~l~~l~~L-~~L~l~~N~l 276 (332)
T 2ft3_A 258 AGLPDLKLL-QVVYLHTNNI 276 (332)
T ss_dssp TTGGGCTTC-CEEECCSSCC
T ss_pred hhhhcCccC-CEEECCCCCC
Confidence 999999999 9999999975
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.1e-28 Score=211.89 Aligned_cols=125 Identities=23% Similarity=0.317 Sum_probs=67.6
Q ss_pred CCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccccc
Q 048125 4 FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLG 82 (258)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 82 (258)
+.+|.++ .+|..++.++++|++|++.+|.+++..+..|..+++|++|++++|.+...++. +..+++|++|++++|.++
T Consensus 58 l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 58 FKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp ESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 4445555 55555555566666666666666655555666666666666666666555444 456666666666666655
Q ss_pred CcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEeccccc
Q 048125 83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQL 137 (258)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 137 (258)
..+.. .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+
T Consensus 137 ~l~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l 183 (597)
T 3oja_B 137 SLPRG-------IFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRL 183 (597)
T ss_dssp CCCTT-------TTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCC
T ss_pred CCCHH-------HhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCC
Confidence 32211 23445555555555555543333333332 3455555544443
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.2e-29 Score=202.19 Aligned_cols=241 Identities=22% Similarity=0.271 Sum_probs=164.3
Q ss_pred CCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccccc
Q 048125 4 FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLG 82 (258)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 82 (258)
.+++.++ ++|..+. ++|++|++.++.+++..+..+.++++|++|++++|.+....+. +..+++|++|++++|.++
T Consensus 38 ~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 38 GSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp CCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4455666 6676543 4677777777777765555677777777777777777665443 677777777777777776
Q ss_pred CcCCCccchhhhccccCCCCcEEEeecccccccccc-cccccccccceEEecccc-cCCccCccCCCCCcccEEEeeCCc
Q 048125 83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPE-AVGNFSTRLGILSVAENQ-LFGNIPSGLRNLVNLELLDLSGNQ 160 (258)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 160 (258)
... ...+..+++|++|++++|.+. .++. ......++++.|++++|. +....+..+..+++|++|++++|.
T Consensus 114 ~~~-------~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 114 NLS-------SSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp SCC-------HHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cCC-------HhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 421 123566777777777777766 3443 222223577777777763 443345566677777777777777
Q ss_pred cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccccc----------------------------
Q 048125 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS---------------------------- 212 (258)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---------------------------- 212 (258)
+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 7766677777777777777777776532222234466777777777776542
Q ss_pred ---CCcccccCcCCcEEeccCCccccccccc-cccccCcceeEecCCCCC
Q 048125 213 ---IPSSLGKCQNLIVLDLYNNNLSGTIPSE-VIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 213 ---~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~l~~~L~l~~n~~ 258 (258)
+|..+..+++|+.|++++|+++ .+|.. +..++++ ++|++++|++
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~~L~L~~N~~ 313 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL-QKIWLHTNPW 313 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC-CEEECCSSCB
T ss_pred hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC-CEEEeeCCCc
Confidence 3445677899999999999999 67765 5789999 9999999985
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.4e-28 Score=213.58 Aligned_cols=246 Identities=18% Similarity=0.191 Sum_probs=160.0
Q ss_pred CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccccc
Q 048125 3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLG 82 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (258)
++.++.++ .+| .+. .+++|++|++.+|.+. .+| .+ .+++|++|++++|...... .+..+++|++|++++|.++
T Consensus 291 ~l~~~~~~-~l~-~l~-~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 291 SLAGVSIK-YLE-DVP-KHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEESCCCC-CCC-CCC-TTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEE
T ss_pred EecCccch-hhh-hcc-ccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccC
Confidence 44455554 455 233 3566666666666553 344 23 5555555555555332211 2334445555555554443
Q ss_pred CcCCCc------------------cchhhhccccCCCCcEEEeeccccccccc-ccccccccccceEEecccccCCccCc
Q 048125 83 NYGEKD------------------NLEFVNSLVNASRLELLQISDNNFGGMLP-EAVGNFSTRLGILSVAENQLFGNIPS 143 (258)
Q Consensus 83 ~~~~~~------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~ 143 (258)
..+... ...++..+..+++|+.|++++|.+.+..+ ..+..+ ++++.|++++|.+....+.
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC-TTCCEEECTTSCCEECCTT
T ss_pred CCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc-ccCCEEECcCCCCCccchh
Confidence 221000 00122355667777777777777765544 233333 5788888888877666677
Q ss_pred cCCCCCcccEEEeeCCcccc-ccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcC
Q 048125 144 GLRNLVNLELLDLSGNQFTS-RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQN 222 (258)
Q Consensus 144 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 222 (258)
.+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..++.+++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 77778888888888888775 36777788888888888888888777777888888888888888888777778888888
Q ss_pred CcEEeccCCccccccccccccccC-cceeEecCCCCC
Q 048125 223 LIVLDLYNNNLSGTIPSEVIGLSS-LSIYLDLSQNQL 258 (258)
Q Consensus 223 L~~L~l~~~~l~~~~~~~~~~~~~-l~~~L~l~~n~~ 258 (258)
|+.|++++|+++ .+|..+..++. + ++|++++|++
T Consensus 523 L~~L~l~~N~l~-~~p~~~~~l~~~L-~~l~l~~N~~ 557 (606)
T 3vq2_A 523 LSTLDCSFNRIE-TSKGILQHFPKSL-AFFNLTNNSV 557 (606)
T ss_dssp CCEEECTTSCCC-CEESCGGGSCTTC-CEEECCSCCC
T ss_pred CCEEECCCCcCc-ccCHhHhhhcccC-cEEEccCCCc
Confidence 888888888888 67777777764 7 8888888875
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.7e-28 Score=212.51 Aligned_cols=246 Identities=19% Similarity=0.282 Sum_probs=145.5
Q ss_pred CCCCcCcccCCCCc--chhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCC-cceEEecc
Q 048125 2 FDFPFNQLQGSLPS--DLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHK-LQRVIISQ 78 (258)
Q Consensus 2 l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~l~~ 78 (258)
|++++|.++ .+|. .+. ++++|++|++.+|.+++.+| .+..+++|++|++++|.+...+..+..+++ |++|++++
T Consensus 310 L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 456677777 6776 444 47777777777777765566 666666666666666666644444666666 66666666
Q ss_pred ccccCcCCCccc------------------hhhhccc-------cCCCCcEEEeecccccccccccccccccccceEEec
Q 048125 79 NHLGNYGEKDNL------------------EFVNSLV-------NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVA 133 (258)
Q Consensus 79 ~~~~~~~~~~~~------------------~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 133 (258)
|.++.++..... ..+..+. .+++|++|++++|.+. .+|..++...++++.|+++
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECC
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECC
Confidence 666533221000 0011122 3445556666666555 4444444333456666666
Q ss_pred ccccCCccCcc-CCCC-------CcccEEEeeCCccccccCCccc--CccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125 134 ENQLFGNIPSG-LRNL-------VNLELLDLSGNQFTSRIPGSIG--DLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN 203 (258)
Q Consensus 134 ~~~~~~~~~~~-~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 203 (258)
+|.+. .+|.. +... ++|++|++++|.+. ..|..+. .+++|++|++++|.+.+ +|..+..+++|++|+
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence 66655 33332 2211 26667777776666 4455554 66677777777777664 666666677777777
Q ss_pred c------ccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 204 F------AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 204 l------~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
+ ++|.+.+.+|..++.+++|+.|++++|++. .+|..+. +.+ ++|+|++|++
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L-~~L~Ls~N~l 599 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNI-SVLDIKDNPN 599 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTC-CEEECCSCTT
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcC-CEEECcCCCC
Confidence 7 345555566666667777777777777773 6666544 566 7777777754
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.1e-27 Score=187.64 Aligned_cols=220 Identities=24% Similarity=0.266 Sum_probs=128.0
Q ss_pred CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEecccc-
Q 048125 3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNH- 80 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~- 80 (258)
+..++.++ .+|..+ .++|++|++.++.+++..+..|..+++|++|++++|.+....+ .+..+++|++|++++|.
T Consensus 17 ~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 17 SCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp ECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 34455555 555432 3466666666666665555556666666666666666655433 25666666666666665
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ 160 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 160 (258)
+.... +..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 93 l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 93 LRSVD-------PATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp CCCCC-------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccC-------HHHhcCCcCCCEEECCCCcCCEECHhHhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 44321 2245556666666666666653333333333 356666666666554444445556666666666666
Q ss_pred cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 65444445666666666666666666555566666666666666666666444444556666666666666655
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=9.5e-28 Score=207.83 Aligned_cols=241 Identities=20% Similarity=0.212 Sum_probs=162.3
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
|++++|.+++..|..+. ++++|++|++.+|.+++..+..|.++++|++|++++|.+...+.. +..+++|++|++++|.
T Consensus 80 L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp EECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence 67778888844444444 688888888888888877777778888888888888888776665 5788888888888888
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeeccccccccccccc------------------------------------ccc
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG------------------------------------NFS 124 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------------------------~~~ 124 (258)
++... +..+..+++|++|++++|.+.+.....+. ...
T Consensus 159 l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 159 LERIE-------DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp CCBCC-------TTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred CCCCC-------hhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 77532 23466677777777777766532111100 001
Q ss_pred cccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEec
Q 048125 125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNF 204 (258)
Q Consensus 125 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 204 (258)
++++.|++++|.+.. +..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus 232 ~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 234444444444432 2445566777777777777776667777777777777777777763 4555566777777777
Q ss_pred ccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
++|.+. .+|..+..+++|+.|++++|.+.+ ++ +..++.| ++|+|++|++
T Consensus 309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L-~~L~l~~N~~ 357 (597)
T 3oja_B 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTL-KNLTLSHNDW 357 (597)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCC-SEEECCSSCE
T ss_pred CCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCC-CEEEeeCCCC
Confidence 777776 566666677777777777777763 33 4556777 7778877764
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=203.10 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=62.1
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|++++|.++ .++...+.++++|++|++++|.+++..|..|.++++|++|++++|.+...+.. .+++|++|++++|.+
T Consensus 26 L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 26 LNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAF 102 (520)
T ss_dssp EECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCC
T ss_pred EECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcc
Confidence 456666666 33332333577777777777777666666677777777777777766644333 566677777777666
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeeccccc
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFG 113 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 113 (258)
+.. ..+..+..+++|++|++++|.+.
T Consensus 103 ~~~------~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 103 DAL------PICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSC------CCCGGGGGCTTCCEEEEEESSCC
T ss_pred ccc------cchhhhccCCcceEEEecCcccc
Confidence 542 12334555666666666665543
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.5e-28 Score=193.38 Aligned_cols=227 Identities=24% Similarity=0.301 Sum_probs=196.0
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCccccc--ccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGP--IPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQN 79 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 79 (258)
|++++|.++ .+|..++.++++|++|++.+|.++.. .+..+.++++|++|++++|.+...+..+..+++|++|++++|
T Consensus 33 L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred EECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence 678899999 88888777899999999999988743 356677899999999999999876666889999999999999
Q ss_pred cccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCC-ccCccCCCCCcccEEEeeC
Q 048125 80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFG-NIPSGLRNLVNLELLDLSG 158 (258)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 158 (258)
.++.... ...+..+++|++|++++|.+.+..+..+..+ +++++|++++|.+.. ..+..+..+++|++|++++
T Consensus 112 ~l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 112 NLKQMSE------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEESSTT------TTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred ccccccc------chhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 9886432 2357788999999999999886666555555 589999999998875 4788889999999999999
Q ss_pred CccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCc-CCcEEeccCCccccc
Q 048125 159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQ-NLIVLDLYNNNLSGT 236 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~ 236 (258)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.+.
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 999977788999999999999999999876666789999999999999999988888888884 999999999999843
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.9e-27 Score=186.80 Aligned_cols=222 Identities=23% Similarity=0.280 Sum_probs=188.9
Q ss_pred ceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125 25 EGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE 103 (258)
Q Consensus 25 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 103 (258)
+++++.+.+++. +|..+ .+++++|++++|.+...... +..+++|++|++++|.++.. .+..+..+++|+
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-------DAAAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTCTTCC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-------CHhhcCCccCCC
Confidence 678888877773 45443 47899999999999887755 88999999999999988753 234678899999
Q ss_pred EEEeeccc-ccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125 104 LLQISDNN-FGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182 (258)
Q Consensus 104 ~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 182 (258)
+|++++|. +....+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEeCCCCCCccccCHHHhcCC-cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC
Confidence 99999997 663335555544 6899999999998866678888999999999999999877777789999999999999
Q ss_pred CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..++.+ ++|++++|++
T Consensus 163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~ 237 (285)
T 1ozn_A 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL-QYLRLNDNPW 237 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC-CEEECCSSCE
T ss_pred CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc-CEEeccCCCc
Confidence 99986666679999999999999999998889999999999999999999996555678899999 9999999975
No 32
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.5e-28 Score=195.75 Aligned_cols=233 Identities=18% Similarity=0.174 Sum_probs=191.9
Q ss_pred CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccccc
Q 048125 3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLG 82 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (258)
++..+.+. +.+..++..+++|++|++++|.+++..+..|.++++|++|++++|.+....+ +..+++|++|++++|.++
T Consensus 16 ~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE
T ss_pred eccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc
Confidence 44555555 4555666668899999999999998878889999999999999999876554 888999999999999887
Q ss_pred CcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccc
Q 048125 83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT 162 (258)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 162 (258)
.. ...++|++|++++|.+.+..+.. .++++.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 94 ~l------------~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 94 EL------------LVGPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp EE------------EECTTCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred cc------------cCCCCcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 42 23489999999999887443322 257999999999988666677888899999999999998
Q ss_pred cccCCcc-cCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccccc
Q 048125 163 SRIPGSI-GDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241 (258)
Q Consensus 163 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 241 (258)
+..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+.+ ++..+..+++|+.|++++|+++ .+|..+
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred cccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHh
Confidence 7666665 4689999999999999854 32 3348999999999999985 4555888999999999999999 688888
Q ss_pred ccccCcceeEecCCCCC
Q 048125 242 IGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 242 ~~~~~l~~~L~l~~n~~ 258 (258)
..++.+ ++|++++|++
T Consensus 234 ~~l~~L-~~L~l~~N~~ 249 (317)
T 3o53_A 234 RFSQNL-EHFDLRGNGF 249 (317)
T ss_dssp CCCTTC-CEEECTTCCC
T ss_pred hcCCCC-CEEEccCCCc
Confidence 899999 9999999985
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.8e-27 Score=206.64 Aligned_cols=245 Identities=22% Similarity=0.181 Sum_probs=189.4
Q ss_pred CcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCc
Q 048125 5 PFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNY 84 (258)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 84 (258)
..+.+.+.+|. +..+++|+++++.++.+.. ++ .+..+++|++|++++|.+...+ .+ .+++|++|++++|.....
T Consensus 270 ~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccc
Confidence 45677777776 4469999999999999874 45 7889999999999999995544 56 899999999999943221
Q ss_pred CCCc------cc--------h---hhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccC-ccCC
Q 048125 85 GEKD------NL--------E---FVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIP-SGLR 146 (258)
Q Consensus 85 ~~~~------~~--------~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~ 146 (258)
.... .+ . .+..+..+++|++|++++|.+. .++..+..+ ++++.|++++|.+....+ ..+.
T Consensus 344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL-EELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTC-TTCCEEECTTSEEESTTTTTTTT
T ss_pred hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCC-CCCCeeECCCCccCCccChhhhh
Confidence 1000 00 0 1233445566666666666655 344444444 478888888887765555 5677
Q ss_pred CCCcccEEEeeCCccccccCCcccCccCCcEEEecCCcccc-ccCCCCCCCCCcceEecccccccccCCcccccCcCCcE
Q 048125 147 NLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLG-EIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIV 225 (258)
Q Consensus 147 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 225 (258)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+..|..+..+++|+.
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 88889999999988887778888889999999999998886 47888899999999999999998888888889999999
Q ss_pred EeccCCccccccccccccccCcceeEecCCCCC
Q 048125 226 LDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 226 L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
|++++|++++..|..+..++++ ++|+|++|.+
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L-~~L~l~~N~l 533 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSL-STLDCSFNRI 533 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTC-CEEECTTSCC
T ss_pred EECCCCcCCCcCHHHccCCCcC-CEEECCCCcC
Confidence 9999999998778889999999 9999999875
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4.2e-27 Score=202.55 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=57.1
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|++++|.++ .++...+.++++|++|++.+|.+++..|..|.++++|++|++++|.+...+.. .+++|++|++++|.+
T Consensus 57 L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 57 LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDF 133 (562)
T ss_dssp EECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCC
T ss_pred EECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCc
Confidence 455566665 33332233466666666666666655555566666666666666665543333 455666666666655
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeeccccc
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFG 113 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 113 (258)
+... .+..+..+++|++|++++|.+.
T Consensus 134 ~~l~------~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 134 DVLP------VCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SBCC------CCGGGGGCTTCCEEEEECSBCC
T ss_pred cccC------chHhhcccCcccEEecCCCccc
Confidence 4321 2234556666666666666543
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=4.2e-27 Score=211.13 Aligned_cols=250 Identities=23% Similarity=0.204 Sum_probs=165.8
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCC-CC--ccccCCcceEEecc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV-PS--LENLHKLQRVIISQ 78 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~--~~~l~~L~~L~l~~ 78 (258)
|++++|...+.++...+.++++|++|++++|.+.+..|..|.++++|++|++++|.+.... .. +..+++|++|++++
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC
Confidence 3444444443443333335666666666666666555666666666666666666665422 22 56666666666666
Q ss_pred ccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccc-c------------------------------cc
Q 048125 79 NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS-T------------------------------RL 127 (258)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~------------------------------~l 127 (258)
|.+.... ....+..+++|++|++++|.+.+..+..+.... + .+
T Consensus 133 N~l~~~~------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 133 NQIRSLY------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp CCCCCCC------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred Ccccccc------cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 6665421 123466777777777777766543333322110 1 25
Q ss_pred ceEEecccccCCccCccC------------------------------------CC--CCcccEEEeeCCccccccCCcc
Q 048125 128 GILSVAENQLFGNIPSGL------------------------------------RN--LVNLELLDLSGNQFTSRIPGSI 169 (258)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~------------------------------------~~--~~~L~~L~l~~~~~~~~~~~~~ 169 (258)
+.|++++|.+....+..+ .. .+++++|++++|.+....+..|
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 566666554322211111 11 2568888888888877777888
Q ss_pred cCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcce
Q 048125 170 GDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSI 249 (258)
Q Consensus 170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~ 249 (258)
..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..|..+++| +
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~ 365 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-Q 365 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC-C
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC-C
Confidence 888899999999998887778888888999999999999887778888889999999999999886666678888888 9
Q ss_pred eEecCCCCC
Q 048125 250 YLDLSQNQL 258 (258)
Q Consensus 250 ~L~l~~n~~ 258 (258)
+|++++|.+
T Consensus 366 ~L~Ls~N~l 374 (844)
T 3j0a_A 366 TLDLRDNAL 374 (844)
T ss_dssp EEEEETCCS
T ss_pred EEECCCCCC
Confidence 999998864
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.1e-27 Score=213.12 Aligned_cols=151 Identities=22% Similarity=0.351 Sum_probs=77.5
Q ss_pred CCCcEEEeecccccccccc--cccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccC-Cc
Q 048125 100 SRLELLQISDNNFGGMLPE--AVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK-LQ 176 (258)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~ 176 (258)
++|+.|++++|.+. .+|. .+..+ ++|+.|++++|.+. .+| .+..+++|++|++++|.+. ..|..+..+++ |+
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred CCccEEEeeCCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence 35555555555554 4444 34333 35555555555554 444 4455555555555555555 44444555555 55
Q ss_pred EEEecCCccccccCCCCCCCCC--cceEecccccccccCCccc---c--cCcCCcEEeccCCccccccccccc-cccCcc
Q 048125 177 MLGLNGNKFLGEIPSSIGNLTL--LMTLNFAENMLEGSIPSSL---G--KCQNLIVLDLYNNNLSGTIPSEVI-GLSSLS 248 (258)
Q Consensus 177 ~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~~~l~~~~~~~~~-~~~~l~ 248 (258)
.|++++|.+. .+|..+...+. |+.|++++|.+.+.+|... . ..++|+.|++++|++. .+|..+. .++.|
T Consensus 623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L- 699 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI- 699 (876)
T ss_dssp EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC-
T ss_pred EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC-
Confidence 5555555555 44544444332 5555555555544333221 1 2235666666666666 4444433 55666
Q ss_pred eeEecCCCCC
Q 048125 249 IYLDLSQNQL 258 (258)
Q Consensus 249 ~~L~l~~n~~ 258 (258)
++|+|++|.+
T Consensus 700 ~~L~Ls~N~L 709 (876)
T 4ecn_A 700 STIILSNNLM 709 (876)
T ss_dssp SEEECCSCCC
T ss_pred CEEECCCCcC
Confidence 6777776653
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.1e-27 Score=196.30 Aligned_cols=223 Identities=23% Similarity=0.231 Sum_probs=192.9
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
|++++|.++ .++...+.++++|++|++.+|.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|.
T Consensus 69 L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 69 LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147 (440)
T ss_dssp EECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred EEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc
Confidence 678899999 55544455799999999999999988888999999999999999999887765 8899999999999999
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ 160 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 160 (258)
+..... ..+..+++|++|++++|...+.++...+...++|+.|++++|.+. .+| .+..+++|++|++++|.
T Consensus 148 i~~~~~-------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 148 IESIPS-------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp CCEECT-------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSC
T ss_pred ccccCH-------HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCc
Confidence 886432 367789999999999965544666544444469999999999887 444 47788999999999999
Q ss_pred cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
+....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99888999999999999999999999888889999999999999999999777778888999999999999875
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.5e-27 Score=196.28 Aligned_cols=224 Identities=22% Similarity=0.216 Sum_probs=193.1
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN 79 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 79 (258)
+|++++|.+++..|..+. ++++|++|++.+|.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|
T Consensus 79 ~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 79 YLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp EEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred EEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 368899999954455444 799999999999999988888999999999999999999887766 888999999999999
Q ss_pred cccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125 80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN 159 (258)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 159 (258)
.+..... ..+..+++|+.|++++|...+.++...+...++|+.|++++|.+.. ++ .+..+++|++|++++|
T Consensus 158 ~l~~~~~-------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 158 PIESIPS-------YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGN 228 (452)
T ss_dssp CCCEECT-------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTS
T ss_pred CcceeCH-------hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCC
Confidence 9885432 3677899999999999655446665544444699999999998873 33 4778899999999999
Q ss_pred ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 999888999999999999999999999888889999999999999999999777777888999999999999875
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=6.3e-27 Score=205.73 Aligned_cols=246 Identities=21% Similarity=0.185 Sum_probs=128.5
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
|++++|.++ .+|...+.++++|++|++.+|.+++..+..|.++++|++|++++|.+...+.. +..+++|++|++++|.
T Consensus 30 L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 30 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence 556667766 44444344577777777777777666666666777777777777766655553 6667777777777776
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccC--CCCCcccEEEeeC
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL--RNLVNLELLDLSG 158 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~ 158 (258)
+..... ..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+ ...++|++|++++
T Consensus 109 l~~~~~-------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 109 IQKIKN-------NPFVKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CCCCCS-------CTTTTCTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred cCccCh-------hHccccCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 654321 234455555666665555543333333322 345555555554432222221 1223444444444
Q ss_pred Cccc---------------------------------------------------cccCCcccCccC--CcEEEecCCcc
Q 048125 159 NQFT---------------------------------------------------SRIPGSIGDLQK--LQMLGLNGNKF 185 (258)
Q Consensus 159 ~~~~---------------------------------------------------~~~~~~~~~~~~--L~~L~l~~~~~ 185 (258)
|.+. +..+..|..++. |+.|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 4443 333333433322 55555555555
Q ss_pred ccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc-----ccc----cccccccCcceeEecCCC
Q 048125 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG-----TIP----SEVIGLSSLSIYLDLSQN 256 (258)
Q Consensus 186 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~----~~~~~~~~l~~~L~l~~n 256 (258)
.+..+..++.+++|++|++++|.+.+..+..+..+++|+.+++++|...+ .+| ..+..++++ ++|++++|
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L-~~L~l~~n 339 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL-EHLNMEDN 339 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC-CEEECCSC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC-CEEECCCC
Confidence 44444445555555555555555554444445555555555555443221 111 144455566 66666665
Q ss_pred C
Q 048125 257 Q 257 (258)
Q Consensus 257 ~ 257 (258)
.
T Consensus 340 ~ 340 (680)
T 1ziw_A 340 D 340 (680)
T ss_dssp C
T ss_pred c
Confidence 4
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=201.77 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=102.1
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEeccc
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQN 79 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 79 (258)
+|++++|.++ .+|..++ ++|++|++++|.+++..+..|.++++|++|++++|.+....+ .+..+++|++|++++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 3688999999 8998765 799999999999998888899999999999999999987755 4899999999999999
Q ss_pred cccCcCCCccchhhhccccCCCCcEEEeecccccc-cccccccccccccceEEecccccC
Q 048125 80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG-MLPEAVGNFSTRLGILSVAENQLF 138 (258)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~ 138 (258)
.++.+ +.. .+++|++|++++|.+.+ .+|..+..+ ++|++|++++|.+.
T Consensus 80 ~l~~l--------p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 80 KLVKI--------SCH--PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLE 128 (520)
T ss_dssp CCCEE--------ECC--CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCC
T ss_pred ceeec--------Ccc--ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccc
Confidence 98743 222 78999999999999875 356666655 47878877776553
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=6.5e-27 Score=209.95 Aligned_cols=251 Identities=20% Similarity=0.183 Sum_probs=196.4
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCccccccccc--ccCCCCCcEEEeecccCCCCCC--CccccCCcceEEe
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVS--ISNASNLRELMIGKNGFSGKVP--SLENLHKLQRVII 76 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l 76 (258)
+|++++|.+++..|..+. ++++|++|++.+|.+++..+.. +.++++|++|++++|.+..... .+..+++|++|++
T Consensus 77 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp EEECTTCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred EEECCCCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 367889999966677666 6999999999999988755554 8899999999999999977654 3889999999999
Q ss_pred ccccccCcCCCccch-------------------hhhccccCC------CCcEEEeeccccccccccccccc--------
Q 048125 77 SQNHLGNYGEKDNLE-------------------FVNSLVNAS------RLELLQISDNNFGGMLPEAVGNF-------- 123 (258)
Q Consensus 77 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~------~L~~L~l~~~~~~~~~~~~~~~~-------- 123 (258)
++|.+.......... .+..+..++ +|+.|++++|.+.+..+..+...
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 999886643321100 011122222 38889998886654333222111
Q ss_pred -----------------------------ccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccC
Q 048125 124 -----------------------------STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK 174 (258)
Q Consensus 124 -----------------------------~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 174 (258)
.++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 315 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC
Confidence 147899999999888667888999999999999999999888889999999
Q ss_pred CcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecC
Q 048125 175 LQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLS 254 (258)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~ 254 (258)
|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++ ++. ++++ .+|+++
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~----~~~L-~~L~l~ 389 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF----IPSI-PDIFLS 389 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS----CCSC-SEEEEE
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC----CCCc-chhccC
Confidence 9999999999987778899999999999999999987777788999999999999999983 332 5566 666666
Q ss_pred CCCC
Q 048125 255 QNQL 258 (258)
Q Consensus 255 ~n~~ 258 (258)
+|.+
T Consensus 390 ~N~l 393 (844)
T 3j0a_A 390 GNKL 393 (844)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6653
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.4e-26 Score=203.55 Aligned_cols=203 Identities=21% Similarity=0.195 Sum_probs=107.9
Q ss_pred CcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccc------------
Q 048125 48 LRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG------------ 114 (258)
Q Consensus 48 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------ 114 (258)
|+.|++++|.+....+. +..+++|+.|++++|.+..... ...+..+++|++|++++|.+.+
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 456 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC------SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC------cccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence 33444444444333222 5556666777776666543100 1234444555555555554432
Q ss_pred --------------cccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccC--------CcccCc
Q 048125 115 --------------MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIP--------GSIGDL 172 (258)
Q Consensus 115 --------------~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~ 172 (258)
..|..+..+ ++++.|++++|.+....+..+..+++|++|++++|.+....+ ..+..+
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l 535 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC
T ss_pred ccchhccccccccccCCcccccC-CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC
Confidence 233333333 356666666665554444445556666666666665553211 124555
Q ss_pred cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccc-cccCcceeE
Q 048125 173 QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYL 251 (258)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~l~~~L 251 (258)
++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+. .++++ ++|
T Consensus 536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L-~~l 614 (680)
T 1ziw_A 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL-TEL 614 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC-SEE
T ss_pred CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc-CEE
Confidence 6666666666666533333566666666666666666644444455666666666666666644444444 45666 666
Q ss_pred ecCCCCC
Q 048125 252 DLSQNQL 258 (258)
Q Consensus 252 ~l~~n~~ 258 (258)
++++|++
T Consensus 615 ~l~~N~~ 621 (680)
T 1ziw_A 615 DMRFNPF 621 (680)
T ss_dssp ECTTCCC
T ss_pred EccCCCc
Confidence 6666654
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.8e-26 Score=187.25 Aligned_cols=240 Identities=25% Similarity=0.376 Sum_probs=159.5
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|++++|.++ .+|. + .++++|++|++.+|.+.+..+ +..+++|++|++++|........+..+++|++|++++|.+
T Consensus 93 L~L~~n~i~-~~~~-~-~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 93 LYIGTNKIT-DISA-L-QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EECCSSCCC-CCGG-G-TTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC
T ss_pred EEccCCccc-CchH-H-cCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc
Confidence 567788887 4553 3 358888888888888775432 6777888888888876554444466677777777777665
Q ss_pred cCcCCCcc-------------chhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCC
Q 048125 82 GNYGEKDN-------------LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNL 148 (258)
Q Consensus 82 ~~~~~~~~-------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~ 148 (258)
........ +.....+..+++|+.+++++|.+.+..+ +..+ ++++.|++++|.+....+ +..+
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~--~~~l 242 (347)
T 4fmz_A 168 KDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP--LANL 242 (347)
T ss_dssp CCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTTC
T ss_pred CCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc--hhcC
Confidence 54321000 0000113444555555555554442211 2222 467777777777653322 6677
Q ss_pred CcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEec
Q 048125 149 VNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDL 228 (258)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 228 (258)
++|++|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..++.+++|+.|++
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 7888888888877643 3567788888888888887743 45777888888888888887777777888888888888
Q ss_pred cCCccccccccccccccCcceeEecCCCCC
Q 048125 229 YNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
++|++++..| +..++.+ ++|++++|+|
T Consensus 319 ~~n~l~~~~~--~~~l~~L-~~L~l~~N~i 345 (347)
T 4fmz_A 319 SQNHITDIRP--LASLSKM-DSADFANQVI 345 (347)
T ss_dssp CSSSCCCCGG--GGGCTTC-SEESSSCC--
T ss_pred cCCccccccC--hhhhhcc-ceeehhhhcc
Confidence 8888885444 7778888 8888888875
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.7e-26 Score=198.70 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=101.4
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
+++++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 36 l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 36 VDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 678899999 7998654 7999999999999988888999999999999999999877554 8999999999999999
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeeccccccc-ccccccccccccceEEecccccC
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGM-LPEAVGNFSTRLGILSVAENQLF 138 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~ 138 (258)
++.+ +.. .+++|++|++++|.+.+. .|..+..+ ++|+.|++++|.+.
T Consensus 112 l~~l--------p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l-~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 112 LQNI--------SCC--PMASLRHLDLSFNDFDVLPVCKEFGNL-TKLTFLGLSAAKFR 159 (562)
T ss_dssp CCEE--------CSC--CCTTCSEEECCSSCCSBCCCCGGGGGC-TTCCEEEEECSBCC
T ss_pred CCcc--------Ccc--ccccCCEEECCCCCccccCchHhhccc-CcccEEecCCCccc
Confidence 8743 222 789999999999998742 34556655 57888888887654
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=198.91 Aligned_cols=239 Identities=21% Similarity=0.206 Sum_probs=178.9
Q ss_pred ccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC--------------------cccc
Q 048125 9 LQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--------------------LENL 68 (258)
Q Consensus 9 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~l 68 (258)
+.+.+|..+. ++++|++|++.++.+. .+|..+..+ +|++|++++|.+...+.. ...+
T Consensus 270 ~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 270 YLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp EESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhhhchhhhc-CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 3334444433 3666666666666555 344444444 555555555554422211 1455
Q ss_pred CCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccC-ccCCC
Q 048125 69 HKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIP-SGLRN 147 (258)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~ 147 (258)
++|++|++++|.++... ..+..+..+++|++|++++|.+. ..+..+..+ ++++.|++++|.+....+ ..+..
T Consensus 347 ~~L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKG-----CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp TTCCEEECCSSCCBEEE-----EEEHHHHTCSCCCEEECCSCSEE-EEEEEEETC-TTCCEEECTTSEEESCTTSCTTTT
T ss_pred CCCCEEeCcCCccCccc-----cccccccccCccCEEECCCCccc-ccccccccc-CCCCEEEccCCccccccchhhhhc
Confidence 66666666666655321 11345667889999999998887 344445544 589999999998875544 46788
Q ss_pred CCcccEEEeeCCccccccCCcccCccCCcEEEecCCccc-cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEE
Q 048125 148 LVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL-GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVL 226 (258)
Q Consensus 148 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 226 (258)
+++|++|++++|.+....+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 999999999999998788889999999999999999987 4788999999999999999999998889999999999999
Q ss_pred eccCCccccccccccccccCcceeEecCCCCC
Q 048125 227 DLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 227 ~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
++++|++++..+..+..++++ ++|++++|++
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~ 530 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSL-QKIWLHTNPW 530 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTC-CEEECCSSCB
T ss_pred eCCCCcCCCCCHHHhhcccCC-cEEEecCCcc
Confidence 999999997777788999999 9999999985
No 46
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.8e-26 Score=185.29 Aligned_cols=240 Identities=26% Similarity=0.336 Sum_probs=171.1
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (258)
+|++++|.++ .++. +.++++|++|++.+|.+++. ..+.++++|++|++++|.+..... +..+++|++|++++|.
T Consensus 70 ~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 70 YLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp EEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCT
T ss_pred EEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCC
Confidence 3678899998 5665 44699999999999998853 368899999999999999987554 8899999999999995
Q ss_pred ccCc-CCCc-------------cchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCC
Q 048125 81 LGNY-GEKD-------------NLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLR 146 (258)
Q Consensus 81 ~~~~-~~~~-------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~ 146 (258)
.... .... .......+..+++|+.|++++|.+. .++. +..+ ++++.+++++|.+....+ +.
T Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-~~~l-~~L~~L~l~~n~l~~~~~--~~ 218 (347)
T 4fmz_A 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE-DISP-LASL-TSLHYFTAYVNQITDITP--VA 218 (347)
T ss_dssp TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCC-CCGG-GGGC-TTCCEEECCSSCCCCCGG--GG
T ss_pred CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccc-cccc-ccCC-CccceeecccCCCCCCch--hh
Confidence 4321 1000 0000111334444555555544443 2221 2222 355555555555442222 55
Q ss_pred CCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEE
Q 048125 147 NLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVL 226 (258)
Q Consensus 147 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 226 (258)
.+++|++|++++|.+....+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 292 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL 292 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE
Confidence 67788888888888874433 77888899999988888743 4678889999999999988743 457788999999
Q ss_pred eccCCccccccccccccccCcceeEecCCCCC
Q 048125 227 DLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 227 ~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
++++|++++..+..+..++++ ++|++++|++
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l 323 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNL-TTLFLSQNHI 323 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTC-SEEECCSSSC
T ss_pred ECcCCcCCCcChhHhhccccC-CEEEccCCcc
Confidence 999999987778888899999 9999999875
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.2e-26 Score=204.82 Aligned_cols=245 Identities=18% Similarity=0.271 Sum_probs=171.5
Q ss_pred CCCCcCcccCCCCc--chhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCC-cceEEecc
Q 048125 2 FDFPFNQLQGSLPS--DLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHK-LQRVIISQ 78 (258)
Q Consensus 2 l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~l~~ 78 (258)
|++++|.++ .+|. .+. ++++|++|++.+|.++ .+| .+..+++|++|++++|.+...+..+..+++ |++|++++
T Consensus 553 L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp EECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred EEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 567788888 7887 555 5888888888888877 566 777788888888888888755555777777 88888888
Q ss_pred ccccCcCCCccc--------------hhh---h----cc--ccCCCCcEEEeecccccccccccccccccccceEEeccc
Q 048125 79 NHLGNYGEKDNL--------------EFV---N----SL--VNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN 135 (258)
Q Consensus 79 ~~~~~~~~~~~~--------------~~~---~----~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 135 (258)
|.++.++..-.. .+. + .+ ..+++|+.|++++|.+. .+|..++..+++|+.|++++|
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 877644321000 000 0 00 02236677777777666 556555534457888888887
Q ss_pred ccCCccCccCCC--------CCcccEEEeeCCccccccCCccc--CccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125 136 QLFGNIPSGLRN--------LVNLELLDLSGNQFTSRIPGSIG--DLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA 205 (258)
Q Consensus 136 ~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 205 (258)
.+. .+|..+.. +++|++|++++|.+. ..|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+++
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence 776 44443322 227888888888887 5566665 78888888888888875 67777788888888886
Q ss_pred c------ccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 206 E------NMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 206 ~------n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
+ |.+.+.+|..+..+++|+.|++++|++ +.+|..+. ++| ++|||++|++
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L-~~LdLs~N~l 839 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL-YILDIADNPN 839 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSS-CEEECCSCTT
T ss_pred CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCC-CEEECCCCCC
Confidence 5 666677888888888888888888888 47777655 577 8888888875
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=8.4e-27 Score=200.11 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=57.3
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
|++++|.+++..|..+. ++++|++|++.+|.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 31 L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 56777777744444444 577788888877777766666777777777777777777766555 6777777777777777
Q ss_pred ccC
Q 048125 81 LGN 83 (258)
Q Consensus 81 ~~~ 83 (258)
++.
T Consensus 110 l~~ 112 (549)
T 2z81_A 110 YQT 112 (549)
T ss_dssp CSS
T ss_pred ccc
Confidence 664
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.7e-27 Score=190.51 Aligned_cols=236 Identities=22% Similarity=0.224 Sum_probs=183.6
Q ss_pred CCCcCcccCCCCcchhccCCCCceEEecCCccc-cccccccc-------CCCCCcEEEeecccCCCCCCC-c--cccCCc
Q 048125 3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFT-GPIPVSIS-------NASNLRELMIGKNGFSGKVPS-L--ENLHKL 71 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~-~--~~l~~L 71 (258)
++.+|.+ .+|..+... |++|++.++.+. ...+..+. ++++|++|++++|.+.+..+. + ..+++|
T Consensus 49 ~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 123 (312)
T 1wwl_A 49 LKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123 (312)
T ss_dssp HHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCC
T ss_pred eeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCc
Confidence 3455666 567766643 888888888774 33444443 689999999999999864444 4 889999
Q ss_pred ceEEeccccccCcCCCccchhhhccccC-----CCCcEEEeecccccccccccccccccccceEEecccccCCc--cCcc
Q 048125 72 QRVIISQNHLGNYGEKDNLEFVNSLVNA-----SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN--IPSG 144 (258)
Q Consensus 72 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~ 144 (258)
++|++++|.++..+ ..+..+ ++|++|++++|.+.+..+..+..+ ++++.|++++|.+... .+..
T Consensus 124 ~~L~Ls~N~l~~~~--------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 124 NILNLRNVSWATRD--------AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SEEEEESCBCSSSS--------SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC-SSCCEEECCSCTTCHHHHHHHH
T ss_pred cEEEccCCCCcchh--------HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC-CCCCEEECCCCCcCcchHHHHH
Confidence 99999999998642 223333 899999999999986655666665 5899999999986432 2223
Q ss_pred --CCCCCcccEEEeeCCcccc---ccCCcccCccCCcEEEecCCccccccC-CCCCCCCCcceEecccccccccCCcccc
Q 048125 145 --LRNLVNLELLDLSGNQFTS---RIPGSIGDLQKLQMLGLNGNKFLGEIP-SSIGNLTLLMTLNFAENMLEGSIPSSLG 218 (258)
Q Consensus 145 --~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 218 (258)
+..+++|++|++++|.+.. .....+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 3778999999999999873 223445677899999999999987664 46677899999999999998 6777666
Q ss_pred cCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 219 KCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 219 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
++|+.|++++|++++ +|. +..++.+ ++|++++|++
T Consensus 274 --~~L~~L~Ls~N~l~~-~p~-~~~l~~L-~~L~L~~N~l 308 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDR-NPS-PDELPQV-GNLSLKGNPF 308 (312)
T ss_dssp --SEEEEEECCSSCCCS-CCC-TTTSCEE-EEEECTTCTT
T ss_pred --CCceEEECCCCCCCC-Chh-HhhCCCC-CEEeccCCCC
Confidence 899999999999995 466 8899999 9999999986
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.3e-27 Score=191.31 Aligned_cols=229 Identities=20% Similarity=0.233 Sum_probs=185.9
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN 79 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 79 (258)
+|++++|.++ .+|...+.++++|++|++.+|.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|
T Consensus 56 ~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 56 SLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp EEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred EEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 3678899999 56665555799999999999999988888899999999999999999877666 788999999999999
Q ss_pred cccCcCCCccchhhhccccCCCCcEEEeeccc-ccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeC
Q 048125 80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNN-FGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSG 158 (258)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 158 (258)
.++..+. ...+..+++|++|++++|. +....+..+..+ ++++.|++++|.+....+..+..+++|++|++++
T Consensus 135 ~l~~l~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 135 PYKTLGE------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp CCSSSCS------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCcccCc------hhhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 9885432 1257789999999999995 553334445544 6899999999998877788899999999999999
Q ss_pred CccccccCCcccCccCCcEEEecCCcccccc-------------------------------CCCCCCCCCcceEecccc
Q 048125 159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI-------------------------------PSSIGNLTLLMTLNFAEN 207 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------~~~~~~~~~L~~L~l~~n 207 (258)
|.+.......+..+++|++|++++|.+.+.. |..+..+++|++|++++|
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 9987544444556889999999999887532 334567889999999999
Q ss_pred cccccCCcc-cccCcCCcEEeccCCccccccc
Q 048125 208 MLEGSIPSS-LGKCQNLIVLDLYNNNLSGTIP 238 (258)
Q Consensus 208 ~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~ 238 (258)
.+. .+|.. +..+++|+.|++++|.+.+..+
T Consensus 288 ~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 288 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999 45554 5889999999999999985443
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-26 Score=194.86 Aligned_cols=216 Identities=19% Similarity=0.177 Sum_probs=183.0
Q ss_pred CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125 21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS 100 (258)
Q Consensus 21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (258)
+++|++|++++|.+++..|..|..+++|++|++++|.+....+ +..+++|++|++++|.++.. ...+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l------------~~~~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL------------LVGP 99 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE------------EECT
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC------------CCCC
Confidence 4489999999999998888899999999999999999876554 88999999999999988742 2348
Q ss_pred CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCccc-CccCCcEEE
Q 048125 101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIG-DLQKLQMLG 179 (258)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ 179 (258)
+|++|++++|.+.+..+.. .++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+. .+++|++|+
T Consensus 100 ~L~~L~L~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 100 SIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TCCEEECCSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CcCEEECcCCcCCCCCccc----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 8999999999988443322 25899999999998877777888899999999999999877777775 789999999
Q ss_pred ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
+++|.+.+..+ ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..++.+ .+|++++|++
T Consensus 176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L-~~L~l~~N~l 249 (487)
T 3oja_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL-EHFDLRGNGF 249 (487)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC-CEEECTTCCB
T ss_pred cCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCC-CEEEcCCCCC
Confidence 99999986532 3458999999999999985 4445888999999999999999 588888899999 9999999975
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=3e-25 Score=193.31 Aligned_cols=111 Identities=27% Similarity=0.390 Sum_probs=90.3
Q ss_pred CCCcccEEEeeCCcc-ccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcE
Q 048125 147 NLVNLELLDLSGNQF-TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIV 225 (258)
Q Consensus 147 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 225 (258)
.++.+++|++++|.+ ....|..|..+++|++|++++|++++..|..|..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 345566667766653 3346777888889999999999988777888899999999999999998777778888899999
Q ss_pred EeccCCcccccccccccccc-CcceeEecCCCCC
Q 048125 226 LDLYNNNLSGTIPSEVIGLS-SLSIYLDLSQNQL 258 (258)
Q Consensus 226 L~l~~~~l~~~~~~~~~~~~-~l~~~L~l~~n~~ 258 (258)
|++++|+|++..|..+..++ +| ++|+|++||+
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L-~~L~L~~Np~ 579 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSL-AFLNLTQNDF 579 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTC-CEEECTTCCB
T ss_pred EECCCCcCCCCCHHHHHhhhCcC-CEEEeeCCCC
Confidence 99999999977788888874 67 9999999885
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=4.2e-25 Score=192.36 Aligned_cols=92 Identities=28% Similarity=0.373 Sum_probs=77.1
Q ss_pred CCcccCccCCcEEEecCCccc-cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccc
Q 048125 166 PGSIGDLQKLQMLGLNGNKFL-GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGL 244 (258)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 244 (258)
+..+..++.++.|++++|... ...|..|..+++|+.|++++|.+.+..|..+.++++|+.|++++|+|++..+..|..+
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence 344555667777888777643 3567888999999999999999998888899999999999999999997777788999
Q ss_pred cCcceeEecCCCCC
Q 048125 245 SSLSIYLDLSQNQL 258 (258)
Q Consensus 245 ~~l~~~L~l~~n~~ 258 (258)
++| ++|||++|++
T Consensus 542 ~~L-~~L~Ls~N~l 554 (635)
T 4g8a_A 542 NSL-QVLDYSLNHI 554 (635)
T ss_dssp TTC-CEEECTTSCC
T ss_pred CCC-CEEECCCCcC
Confidence 999 9999999975
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.1e-27 Score=188.10 Aligned_cols=231 Identities=20% Similarity=0.184 Sum_probs=187.8
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (258)
+|++++|.+++..|..+ .++++|++|++.+|.+++..+ +..+++|++|++++|.+.... ..++|++|++++|.
T Consensus 38 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 38 ELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNN 110 (317)
T ss_dssp EEECTTSCCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSC
T ss_pred EEECcCCccCcCCHHHh-hCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCc
Confidence 36889999995444444 479999999999999986554 889999999999999886533 44899999999999
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccC-CCCCcccEEEeeCC
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGN 159 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 159 (258)
++... ...+++|++|++++|.+.+..+..+..+ ++++.|++++|.+....+..+ ..+++|++|++++|
T Consensus 111 l~~~~----------~~~~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 111 ISRVS----------CSRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CSEEE----------ECCCSSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred cCCcC----------ccccCCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 87642 2246889999999999985545455544 589999999998876555555 46789999999999
Q ss_pred ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc-cccc
Q 048125 160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS-GTIP 238 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~ 238 (258)
.+... +. ...+++|++|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+. +.++
T Consensus 180 ~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 99855 32 235889999999999998 45556889999999999999998 56778889999999999999998 6777
Q ss_pred cccccccCcceeEecC
Q 048125 239 SEVIGLSSLSIYLDLS 254 (258)
Q Consensus 239 ~~~~~~~~l~~~L~l~ 254 (258)
..+..++.+ ++|+++
T Consensus 256 ~~~~~~~~L-~~l~l~ 270 (317)
T 3o53_A 256 DFFSKNQRV-QTVAKQ 270 (317)
T ss_dssp HHHHTCHHH-HHHHHH
T ss_pred HHHhccccc-eEEECC
Confidence 788888888 777765
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=9e-25 Score=183.97 Aligned_cols=77 Identities=30% Similarity=0.457 Sum_probs=47.5
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|++++|.++ .+|. + .++++|++|++.+|.+.+..+ +.++++|++|++++|.+..... +..+++|++|++++|.+
T Consensus 73 L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 73 INFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTI 146 (466)
T ss_dssp EECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEE
T ss_pred EECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCcc
Confidence 456666666 3343 3 346666666666666664333 6666777777777776655433 66667777777777766
Q ss_pred cCc
Q 048125 82 GNY 84 (258)
Q Consensus 82 ~~~ 84 (258)
...
T Consensus 147 ~~~ 149 (466)
T 1o6v_A 147 SDI 149 (466)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.9e-24 Score=169.32 Aligned_cols=202 Identities=25% Similarity=0.313 Sum_probs=158.1
Q ss_pred CCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125 22 PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS 100 (258)
Q Consensus 22 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (258)
.+.+++++.++.++. +|..+. +.+++|++++|.+...... +..+++|++|++++|.++.... ..+..++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-------~~~~~l~ 85 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-------GIFKELK 85 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-------TTTSSCT
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh-------hhhcCCC
Confidence 457889999888884 555443 6799999999998877664 8888999999999998875332 2456788
Q ss_pred CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125 101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180 (258)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 180 (258)
+|++|++++|.+. .++...+...++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus 86 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 86 NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 9999999999887 444433333358899999888887666667788888999999988888666667888888999999
Q ss_pred cCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 888888666667888888999999988888666666778888899999888876
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.5e-25 Score=192.27 Aligned_cols=173 Identities=20% Similarity=0.267 Sum_probs=130.8
Q ss_pred CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc
Q 048125 3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL 81 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 81 (258)
+.+++.++ ++|..++ ++|++|++++|.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.+
T Consensus 11 ~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp ECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 35567788 8898654 7899999999999988888999999999999999999877654 89999999999999998
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeeccccccc-ccccccccccccceEEecccccCCcc-CccCCCCCcccEEEeeCC
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGM-LPEAVGNFSTRLGILSVAENQLFGNI-PSGLRNLVNLELLDLSGN 159 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 159 (258)
+.. .+..+..+++|++|++++|.+.+. .+..+..+ +++++|++++|.....+ +..+..+++|++|++++|
T Consensus 87 ~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 87 SSL-------SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp CSC-------CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred Ccc-------CHHHhccCCCCcEEECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 863 233477888899999988887642 34444444 57888888887633233 356777888888888888
Q ss_pred ccccccCCcccC------------------------ccCCcEEEecCCcccc
Q 048125 160 QFTSRIPGSIGD------------------------LQKLQMLGLNGNKFLG 187 (258)
Q Consensus 160 ~~~~~~~~~~~~------------------------~~~L~~L~l~~~~~~~ 187 (258)
.+.+..+..+.. +++|++|++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 777655555544 4566666666666543
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.7e-25 Score=173.32 Aligned_cols=221 Identities=21% Similarity=0.215 Sum_probs=172.6
Q ss_pred CCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccccc
Q 048125 4 FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLG 82 (258)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 82 (258)
..+.+++ .+|..+. ++|++|++.++.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|.++
T Consensus 14 c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 14 CMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp CTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 3445566 6777543 5799999999999877777888999999999999988776654 788899999999999887
Q ss_pred CcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCc-cCccCCCCCcccEEEeeCCcc
Q 048125 83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN-IPSGLRNLVNLELLDLSGNQF 161 (258)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 161 (258)
... +..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+... +|..+..+++|++|++++|.+
T Consensus 90 ~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 90 SLA-------LGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp EEC-------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccC-------hhhhcCCccccEEECCCCCccccCchhcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 532 2367788999999999998874444344444 5899999999888653 577888889999999999988
Q ss_pred ccccCCcccCccCCc----EEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125 162 TSRIPGSIGDLQKLQ----MLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237 (258)
Q Consensus 162 ~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 237 (258)
.+..+..+..+++++ ++++++|.+.+..+..+. ..+|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 876677777777777 889999998855444444 447999999999988666666788899999999999888543
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.7e-25 Score=190.69 Aligned_cols=231 Identities=21% Similarity=0.203 Sum_probs=182.2
Q ss_pred CceEEecCC-cccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccc------------
Q 048125 24 LEGLNLAGN-QFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNL------------ 90 (258)
Q Consensus 24 L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------ 90 (258)
++.+++.++ .+.+..+..+..+++|++|++++|.+...+..+..+ +|++|++++|.+..++.....
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBS
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcc
Confidence 566777766 667778888999999999999999998766667777 999999999988754331100
Q ss_pred hhhhccccCCCCcEEEeecccccccc--cccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccC-C
Q 048125 91 EFVNSLVNASRLELLQISDNNFGGML--PEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIP-G 167 (258)
Q Consensus 91 ~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 167 (258)
........+++|++|++++|.+.+.. +..+..+ ++++.|++++|.+.. .+..+..+++|++|++++|.+.+..+ .
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-SCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred ccccccccCCCCCEEeCcCCccCcccccccccccc-CccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchh
Confidence 00001145677888888887765332 3444444 578888888887763 33337788899999999998876544 5
Q ss_pred cccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc-ccCCcccccCcCCcEEeccCCccccccccccccccC
Q 048125 168 SIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE-GSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSS 246 (258)
Q Consensus 168 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 246 (258)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..|..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 7788999999999999998888889999999999999999987 468888999999999999999999777889999999
Q ss_pred cceeEecCCCCC
Q 048125 247 LSIYLDLSQNQL 258 (258)
Q Consensus 247 l~~~L~l~~n~~ 258 (258)
| ++|++++|.+
T Consensus 496 L-~~L~l~~n~l 506 (570)
T 2z63_A 496 L-QVLNMASNQL 506 (570)
T ss_dssp C-CEEECCSSCC
T ss_pred C-CEEeCCCCcC
Confidence 9 9999999875
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.5e-24 Score=171.48 Aligned_cols=202 Identities=23% Similarity=0.213 Sum_probs=142.0
Q ss_pred hccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhcc
Q 048125 18 GFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSL 96 (258)
Q Consensus 18 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 96 (258)
..++++++++++.++.++. +|..+. +.++.|++++|.+...... +..+++|++|++++|.++... ..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---------VD 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---------CC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc---------CC
Confidence 3357788888888888773 454443 6788888888888765543 777888888888888776432 12
Q ss_pred ccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCc
Q 048125 97 VNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQ 176 (258)
Q Consensus 97 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 176 (258)
..+++|++|++++|.+. .+|..+..+ ++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 56777888888888776 555544444 4677777777777654556677777777777777777766666667777777
Q ss_pred EEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 177 MLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 177 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
.|++++|++++..+..|..+++|+.|++++|.+. .+|..+....+|+.+++++|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 7777777777544455677777777777777776 56666666677777777777665
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.6e-26 Score=192.49 Aligned_cols=231 Identities=20% Similarity=0.172 Sum_probs=190.4
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (258)
+|++++|.+++..|..+. ++++|++|++++|.+++..+ +..+++|++|++++|.+...+ ..++|++|++++|.
T Consensus 38 ~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNN 110 (487)
T ss_dssp EEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSC
T ss_pred EEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEECcCCc
Confidence 378899999954445554 69999999999999986555 889999999999999887543 34899999999999
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCC-CCCcccEEEeeCC
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLR-NLVNLELLDLSGN 159 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~ 159 (258)
++... ...+++|+.|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+. .+++|++|++++|
T Consensus 111 l~~~~----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 111 ISRVS----------CSRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CCCEE----------ECCCSSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCCC----------ccccCCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 98642 2246889999999999986666666655 5899999999998866676665 7899999999999
Q ss_pred ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc-cccc
Q 048125 160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS-GTIP 238 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~ 238 (258)
.+.+..+ ...+++|++|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+. +.+|
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 9986533 3458999999999999995 5556889999999999999998 47777888999999999999998 5667
Q ss_pred cccccccCcceeEecC
Q 048125 239 SEVIGLSSLSIYLDLS 254 (258)
Q Consensus 239 ~~~~~~~~l~~~L~l~ 254 (258)
..+..++.+ ..++++
T Consensus 256 ~~~~~l~~L-~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRV-QTVAKQ 270 (487)
T ss_dssp HHHTTCHHH-HHHHHH
T ss_pred HHHHhCCCC-cEEecc
Confidence 777777777 766664
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.9e-25 Score=171.75 Aligned_cols=220 Identities=20% Similarity=0.187 Sum_probs=178.0
Q ss_pred eEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEeccccccCcCCCccchhhhccccCCCCcE
Q 048125 26 GLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLEL 104 (258)
Q Consensus 26 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 104 (258)
.++..+.++. .+|..+. +.+++|++++|.+..... .+..+++|++|++++|.++... ...+..+++|++
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~ 80 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-------DGAYQSLSHLST 80 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-------TTTTTTCTTCCE
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-------HHHccCCcCCCE
Confidence 3455555555 3555443 579999999999987776 4889999999999999887532 235778999999
Q ss_pred EEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccc-cCCcccCccCCcEEEecCC
Q 048125 105 LQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSR-IPGSIGDLQKLQMLGLNGN 183 (258)
Q Consensus 105 L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~ 183 (258)
|++++|.+.+..+..+..+ +++++|++++|.+....+..+..+++|++|++++|.+... .|..+..+++|++|++++|
T Consensus 81 L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 81 LILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp EECTTCCCCEECTTTTTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCccCccChhhhcCC-ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 9999999885555555555 6899999999988765566788999999999999999854 4888999999999999999
Q ss_pred ccccccCCCCCCCCCcc----eEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 184 KFLGEIPSSIGNLTLLM----TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 184 ~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
.+.+..+..+..+++|+ ++++++|.+.+..+..+ ...+|+.|++++|++++..+..+..++++ ++|++++|++
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~ 236 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPW 236 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSC-CEEECCSSCB
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccc-cEEEccCCcc
Confidence 99876667777777777 89999999986555444 45589999999999995555567889999 9999999985
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.5e-25 Score=179.13 Aligned_cols=222 Identities=22% Similarity=0.238 Sum_probs=178.3
Q ss_pred CCCCcCccc-CCCCcchh------ccCCCCceEEecCCcccccccccc--cCCCCCcEEEeecccCCCCCCCcccc----
Q 048125 2 FDFPFNQLQ-GSLPSDLG------FTLPNLEGLNLAGNQFTGPIPVSI--SNASNLRELMIGKNGFSGKVPSLENL---- 68 (258)
Q Consensus 2 l~~~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l---- 68 (258)
|++++|.++ ..+|..++ .++++|++|++.+|.+++..|..+ ..+++|++|++++|.+...+..+..+
T Consensus 68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~ 147 (312)
T 1wwl_A 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147 (312)
T ss_dssp CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTC
T ss_pred cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhh
Confidence 678888884 44665543 148999999999999998888876 88999999999999998874446666
Q ss_pred -CCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccc--ccccc-cccccccceEEecccccCCc--cC
Q 048125 69 -HKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGM--LPEAV-GNFSTRLGILSVAENQLFGN--IP 142 (258)
Q Consensus 69 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~-~~~~~~l~~L~l~~~~~~~~--~~ 142 (258)
++|++|++++|.+.... +..+..+++|++|++++|.+.+. .+..+ ....+++++|++++|.+... .+
T Consensus 148 ~~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 148 KPGLKVLSIAQAHSLNFS-------CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp CTTCCEEEEESCSCCCCC-------TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred cCCCcEEEeeCCCCccch-------HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence 89999999999998633 34678899999999999987644 23333 12336899999999988731 22
Q ss_pred -ccCCCCCcccEEEeeCCccccccC-CcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccC
Q 048125 143 -SGLRNLVNLELLDLSGNQFTSRIP-GSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKC 220 (258)
Q Consensus 143 -~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 220 (258)
..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l 295 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL 295 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence 334567899999999999986553 45667899999999999998 7777766 8999999999999855 65 8899
Q ss_pred cCCcEEeccCCcccc
Q 048125 221 QNLIVLDLYNNNLSG 235 (258)
Q Consensus 221 ~~L~~L~l~~~~l~~ 235 (258)
++|+.|++++|.+++
T Consensus 296 ~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEEEEECTTCTTTC
T ss_pred CCCCEEeccCCCCCC
Confidence 999999999999884
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1e-23 Score=177.57 Aligned_cols=231 Identities=28% Similarity=0.413 Sum_probs=139.6
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|++.++.++ .+|. +. .+++|++|++++|.+++..+ +.++++|++|++++|.+....+ +..+++|++|++++|.+
T Consensus 51 L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 51 LQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI 124 (466)
T ss_dssp EECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCC
Confidence 567788888 6775 44 59999999999999986544 8899999999999999987665 88999999999999988
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeecccccccccccccc--------------------cccccceEEecccccCCcc
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN--------------------FSTRLGILSVAENQLFGNI 141 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------------------~~~~l~~L~l~~~~~~~~~ 141 (258)
+... .+..+++|++|++++|.+.+ ++. +.. ..++|+.|++++|.+...
T Consensus 125 ~~~~---------~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 125 TDID---------PLKNLTNLNRLELSSNTISD-ISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp CCCG---------GGTTCTTCSEEEEEEEEECC-CGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCh---------HHcCCCCCCEEECCCCccCC-Chh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-
Confidence 7542 25667777777777776652 221 111 113455555554443311
Q ss_pred CccCCCCCcccEEEeeCCccccccC--------------------CcccCccCCcEEEecCCccccccCCCCCCCCCcce
Q 048125 142 PSGLRNLVNLELLDLSGNQFTSRIP--------------------GSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMT 201 (258)
Q Consensus 142 ~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 201 (258)
..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred -hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence 123333444444444444332211 133444455555555554443222 445555555
Q ss_pred EecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 202 LNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 202 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..++++ ++|++++|.+
T Consensus 270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-~~L~L~~n~l 321 (466)
T 1o6v_A 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL-TYLTLYFNNI 321 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC-SEEECCSSCC
T ss_pred EECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC-CEEECcCCcC
Confidence 5555555553222 4555666666666666653222 5556666 6666666653
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.3e-23 Score=163.17 Aligned_cols=197 Identities=21% Similarity=0.313 Sum_probs=155.5
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH 80 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 80 (258)
++++++.++ .+|..+. +++++|++.++.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|.
T Consensus 21 l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 21 VDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp EECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 466777888 7787543 5788999999988877667788899999999999988776665 5788899999999988
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ 160 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 160 (258)
++.... ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus 97 l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 97 LQALPI-------GVFDQLVNLAELRLDRNQLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp CCCCCT-------TTTTTCSSCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCH-------hHcccccCCCEEECCCCccCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 875332 246678889999999988874444444444 589999999988875555567888899999999998
Q ss_pred cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE 210 (258)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 210 (258)
+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 88766777888889999999999888655567888899999999998875
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.1e-24 Score=169.29 Aligned_cols=210 Identities=23% Similarity=0.277 Sum_probs=171.1
Q ss_pred cCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125 20 TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA 99 (258)
Q Consensus 20 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (258)
.+++|++|++.++.++.. ..+..+++|++|++++|.+... ..+..+++|++|++++|.++... ...+..+
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~-------~~~~~~l 108 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLP-------NGVFDKL 108 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCC-------TTTTTTC
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccC-------hhHhcCC
Confidence 488999999999988742 3577899999999999988764 35788899999999999887533 2246788
Q ss_pred CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179 (258)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 179 (258)
++|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccCHHHhccC-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 999999999998884444334444 5899999999988755666678889999999999999877777788899999999
Q ss_pred ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCc
Q 048125 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSL 247 (258)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l 247 (258)
+++|.+.+..+..+..+++|+.|++++|.+. +.+++|+.+++.+|++.|.+|.++..++..
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 9999998777777889999999999999876 346788899999999998898887766654
No 67
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.4e-26 Score=188.80 Aligned_cols=252 Identities=15% Similarity=0.199 Sum_probs=189.5
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCccccccc----ccccCCC-CCcEEEeecccCCCCCCC-cccc-----CC
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIP----VSISNAS-NLRELMIGKNGFSGKVPS-LENL-----HK 70 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~-~~~l-----~~ 70 (258)
+++++|.+++.+|.... ..++|++|++++|.+++..+ ..+.+++ +|++|++++|.+...... +... ++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999977776444 46669999999999987766 6777888 899999999999765443 4443 89
Q ss_pred cceEEeccccccCcCCCccchhhhccccC-CCCcEEEeeccccccccccccccc----ccccceEEecccccCCcc----
Q 048125 71 LQRVIISQNHLGNYGEKDNLEFVNSLVNA-SRLELLQISDNNFGGMLPEAVGNF----STRLGILSVAENQLFGNI---- 141 (258)
Q Consensus 71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~~~~~~---- 141 (258)
|++|++++|.++..+.. .+...+..+ ++|++|++++|.+.+..+..+... +.++++|++++|.+....
T Consensus 82 L~~L~Ls~n~l~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSD---ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CCEEECCSSCGGGSCHH---HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred ccEEECcCCcCChHHHH---HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 99999999998865433 344445566 899999999999885555443322 358999999999887432
Q ss_pred CccCCCCC-cccEEEeeCCccccccCCcc----cCc-cCCcEEEecCCccccc----cCCCCCC-CCCcceEeccccccc
Q 048125 142 PSGLRNLV-NLELLDLSGNQFTSRIPGSI----GDL-QKLQMLGLNGNKFLGE----IPSSIGN-LTLLMTLNFAENMLE 210 (258)
Q Consensus 142 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~n~~~ 210 (258)
+..+...+ +|++|++++|.+....+..+ ... ++|++|++++|.+.+. ++..+.. .++|++|++++|.+.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 33344444 99999999999986554433 344 5999999999998852 4445554 469999999999998
Q ss_pred ccCC----cccccCcCCcEEeccCCcccc-------ccccccccccCcceeEecCCCCC
Q 048125 211 GSIP----SSLGKCQNLIVLDLYNNNLSG-------TIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 211 ~~~~----~~~~~~~~L~~L~l~~~~l~~-------~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
+..+ ..+..+++|+.|++++|.+.+ .++..+..++.+ ++||+++|++
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L-~~LdL~~N~l 296 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI-ILVDKNGKEI 296 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE-EEECTTSCBC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce-EEEecCCCcC
Confidence 6544 334667999999999999442 344567788889 9999999975
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4.4e-23 Score=172.90 Aligned_cols=201 Identities=21% Similarity=0.233 Sum_probs=129.5
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|++++|.++ .+| .+. ++++|++|++.+|.+++. + +..+++|++|++++|.+... .+..+++|++|++++|.+
T Consensus 47 L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 47 LDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp EECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC--CCTTCTTCCEEECCSSCC
T ss_pred EEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee--ecCCCCcCCEEECCCCcC
Confidence 577788888 456 344 588888888888888764 3 77788888888888888765 377788888888888877
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcc
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQF 161 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (258)
+.. .+..+++|++|++++|.+.+ ++ +..+ ++++.|++++|.....+ .+..+++|++|++++|.+
T Consensus 119 ~~l----------~~~~l~~L~~L~l~~N~l~~-l~--l~~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 119 TKL----------DVSQNPLLTYLNCARNTLTE-ID--VSHN-TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp SCC----------CCTTCTTCCEEECTTSCCSC-CC--CTTC-TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred Cee----------cCCCCCcCCEEECCCCccce-ec--cccC-CcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 643 25567777777777777763 22 3333 46666666666322122 245556666666666666
Q ss_pred ccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125 162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG 235 (258)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 235 (258)
.+ .+ +..+++|+.|++++|.+++. .++.+++|+.|++++|.+.+ +| ++.+++|+.|++++|++++
T Consensus 183 ~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 183 TE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 53 22 45566666666666665532 25556666666666666653 33 4556666666666666653
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.1e-23 Score=164.94 Aligned_cols=194 Identities=22% Similarity=0.199 Sum_probs=126.0
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
++++++.++ .+|..+. +++++|++.+|.+++..+..|.++++|++|++++|.+...... ..+++|++|++++|.+
T Consensus 15 l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 15 VNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp EECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC
T ss_pred EECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC
Confidence 455666666 6665543 4677777777777666666677777777777777776654332 5667777777777766
Q ss_pred cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcc
Q 048125 82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQF 161 (258)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (258)
+. ++..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 90 ~~--------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 90 QS--------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp SS--------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred Cc--------CchhhccCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 53 23345566777777777777763333333333 4677777777776644455566677777777777777
Q ss_pred ccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125 162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE 210 (258)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 210 (258)
....+..|..+++|++|++++|.++ .+|..+...++|+.+++++|++.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6555556666777777777777776 55666666667777777777664
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.8e-23 Score=174.09 Aligned_cols=179 Identities=21% Similarity=0.180 Sum_probs=108.8
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (258)
+|++++|.++ .+| +. ++++|++|++.+|.+++. + +.++++|++|++++|.+.... +..+++|++|++++|.
T Consensus 68 ~L~Ls~n~l~-~~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 68 KLICTSNNIT-TLD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp EEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC
T ss_pred EEEccCCcCC-eEc--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc
Confidence 3678888888 455 44 689999999999988864 2 788899999999999887753 7888899999999998
Q ss_pred ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125 81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ 160 (258)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 160 (258)
++.. .+..+++|++|++++|...+.++ +..+ ++++.|++++|.+.. ++ +..+++|++|++++|.
T Consensus 139 l~~l----------~l~~l~~L~~L~l~~n~~~~~~~--~~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 139 LTEI----------DVSHNTQLTELDCHLNKKITKLD--VTPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CSCC----------CCTTCTTCCEEECTTCSCCCCCC--CTTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSC
T ss_pred ccee----------ccccCCcCCEEECCCCCcccccc--cccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCc
Confidence 8753 24445556666665553322221 2222 355555555555442 22 3444555555555555
Q ss_pred cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE 210 (258)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 210 (258)
+.+. .+..+++|++|++++|.+.+ +| +..+++|+.|++++|.+.
T Consensus 203 l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 203 ITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred CCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 4432 24444555555555555543 33 444455555555555544
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1e-25 Score=185.41 Aligned_cols=242 Identities=18% Similarity=0.241 Sum_probs=187.5
Q ss_pred CCCcchhccCCCCceEEecCCccccccc----ccccCCCCCcEEEeecccCCCCC---C-C-------ccccCCcceEEe
Q 048125 12 SLPSDLGFTLPNLEGLNLAGNQFTGPIP----VSISNASNLRELMIGKNGFSGKV---P-S-------LENLHKLQRVII 76 (258)
Q Consensus 12 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~---~-~-------~~~l~~L~~L~l 76 (258)
.++..+. .+++|++|++.+|.+++..+ ..+..+++|++|++++|.+.... + . +..+++|++|++
T Consensus 23 ~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3555555 58999999999999886543 34678999999999998654322 1 1 257899999999
Q ss_pred ccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccc------------cccceEEecccccCC-ccC-
Q 048125 77 SQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS------------TRLGILSVAENQLFG-NIP- 142 (258)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------~~l~~L~l~~~~~~~-~~~- 142 (258)
++|.+...+.. .++..+..+++|++|++++|.+....+..+.... ++|+.|++++|.+.. ..+
T Consensus 102 s~n~l~~~~~~---~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 102 SDNAFGPTAQE---PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp CSCCCCTTTHH---HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred CCCcCCHHHHH---HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 99998864332 4566788899999999999988643333332221 489999999998863 233
Q ss_pred --ccCCCCCcccEEEeeCCcccc-----ccCCcccCccCCcEEEecCCccc----cccCCCCCCCCCcceEecccccccc
Q 048125 143 --SGLRNLVNLELLDLSGNQFTS-----RIPGSIGDLQKLQMLGLNGNKFL----GEIPSSIGNLTLLMTLNFAENMLEG 211 (258)
Q Consensus 143 --~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~~~~ 211 (258)
..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+. ..+|..+..+++|++|++++|.+.+
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 356678899999999998873 23447788999999999999985 4677788899999999999999975
Q ss_pred c----CCccc--ccCcCCcEEeccCCcccc----cccccc-ccccCcceeEecCCCCC
Q 048125 212 S----IPSSL--GKCQNLIVLDLYNNNLSG----TIPSEV-IGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 212 ~----~~~~~--~~~~~L~~L~l~~~~l~~----~~~~~~-~~~~~l~~~L~l~~n~~ 258 (258)
. ++..+ +.+++|+.|++++|.+++ .++..+ ..+++| ++|++++|++
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L-~~L~l~~N~l 315 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL-LFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC-CEEECTTSBS
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc-eEEEccCCcC
Confidence 4 44555 338999999999999996 477777 557999 9999999975
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=4.4e-23 Score=158.71 Aligned_cols=197 Identities=20% Similarity=0.267 Sum_probs=142.4
Q ss_pred CCCcEEEeecccCCCCCCC-ccccCCcceEEecccc-ccCcCCCccchhhhccccCCCCcEEEeec-ccccccccccccc
Q 048125 46 SNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH-LGNYGEKDNLEFVNSLVNASRLELLQISD-NNFGGMLPEAVGN 122 (258)
Q Consensus 46 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~ 122 (258)
.++++|++++|.+...... +..+++|++|++++|. ++.+.. ..+..+++|++|++++ |.+....+..+..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-------~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-------HSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-------TTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-------hHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 3677777777777766553 6677778888887775 654322 2566777888888887 6666332333333
Q ss_pred cccccceEEecccccCCccCccCCCCCccc---EEEeeCC-ccccccCCcccCccCCc-EEEecCCccccccCCCCCCCC
Q 048125 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLE---LLDLSGN-QFTSRIPGSIGDLQKLQ-MLGLNGNKFLGEIPSSIGNLT 197 (258)
Q Consensus 123 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~ 197 (258)
+ ++|+.|++++|.+.. +|. +..+++|+ +|++++| .+....+..|..+++|+ +|++++|.++...+..+.. +
T Consensus 104 l-~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 104 L-PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T 179 (239)
T ss_dssp C-TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred C-CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence 3 578888888887763 454 66677776 9999998 88866677788889999 9999999888443445555 7
Q ss_pred CcceEeccccc-ccccCCcccccC-cCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125 198 LLMTLNFAENM-LEGSIPSSLGKC-QNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ 257 (258)
Q Consensus 198 ~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~ 257 (258)
+|++|++++|+ +.+..+..+..+ ++|+.|++++|+++ .+|.. .++.+ ++|++++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L-~~L~l~~~~ 237 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHL-KELIARNTW 237 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTC-SEEECTTC-
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccC-ceeeccCcc
Confidence 89999999995 876667778888 89999999999998 45544 56778 888888764
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=2e-22 Score=174.08 Aligned_cols=224 Identities=28% Similarity=0.349 Sum_probs=139.7
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (258)
|+++++.++ .+|..++ ++|++|++.+|.++. +|. .+++|++|++++|.+...+. .+++|++|++++|.+
T Consensus 45 L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 45 LNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp EECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred EEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence 567788888 7787654 678888888887774 443 46778888888887765443 557777777777766
Q ss_pred cCcCCCc----cc-----hhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCccc
Q 048125 82 GNYGEKD----NL-----EFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLE 152 (258)
Q Consensus 82 ~~~~~~~----~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~ 152 (258)
+.++... .+ .+...-..+++|++|++++|.+. .+|.. +.+++.|++++|.+.. ++ ..+++|+
T Consensus 114 ~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~-l~---~~~~~L~ 184 (622)
T 3g06_A 114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LP---MLPSGLQ 184 (622)
T ss_dssp CCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSC-CC---CCCTTCC
T ss_pred CCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCC-CcCCc----cCCCCEEECCCCCCCC-Cc---ccCCCCc
Confidence 6532200 00 00000001255666666666554 22221 1233333333333321 11 1124455
Q ss_pred EEEeeCCcccc-------------------ccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccC
Q 048125 153 LLDLSGNQFTS-------------------RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSI 213 (258)
Q Consensus 153 ~L~l~~~~~~~-------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 213 (258)
+|++++|.+.+ ..+. .+++|++|++++|.+++ +| ..+++|+.|++++|.+. .+
T Consensus 185 ~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~l 256 (622)
T 3g06_A 185 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SL 256 (622)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred EEECCCCCCCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cC
Confidence 55555554442 1221 13678888888888773 45 45578899999999888 45
Q ss_pred CcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 214 PSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 214 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
|. .+++|+.|++++|+|+ .+|..+..++++ ++|+|++|++
T Consensus 257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L-~~L~L~~N~l 296 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPL 296 (622)
T ss_dssp CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT-CEEECCSCCC
T ss_pred Cc---ccccCcEEeCCCCCCC-cCCHHHhhcccc-CEEEecCCCC
Confidence 54 5688999999999999 789899999999 9999999986
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.6e-23 Score=164.17 Aligned_cols=201 Identities=21% Similarity=0.255 Sum_probs=165.1
Q ss_pred CCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCC
Q 048125 23 NLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRL 102 (258)
Q Consensus 23 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (258)
++..+++..+.+.+. ..+..+++|+.|++.++.+... ..+..+++|++|++++|.+... ..+..+++|
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L 87 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI---------SALKELTNL 87 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCC---------GGGTTCTTC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCc---------hhhcCCCCC
Confidence 455566666666533 3456789999999999988753 3478899999999999988752 367788999
Q ss_pred cEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125 103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182 (258)
Q Consensus 103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 182 (258)
++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 88 ~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 88 TYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccChhHhcCC-cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 999999999884444434444 6899999999998866666788899999999999999877777788999999999999
Q ss_pred CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
|.+++..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 999877677789999999999999999977777788999999999999988743
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.3e-22 Score=156.05 Aligned_cols=205 Identities=22% Similarity=0.273 Sum_probs=168.3
Q ss_pred ccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeeccc-CCCCCC-CccccCCcceEEecc-ccccCcC
Q 048125 9 LQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNG-FSGKVP-SLENLHKLQRVIISQ-NHLGNYG 85 (258)
Q Consensus 9 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~-~~~~~~~ 85 (258)
++ ++|. + .++|++|++.++.+++..+..|.++++|++|++++|. +..... .+..+++|++|++++ |.++...
T Consensus 23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 44 7777 3 4589999999999998777789999999999999997 776665 488999999999998 8887533
Q ss_pred CCccchhhhccccCCCCcEEEeecccccccccccccccccccc---eEEeccc-ccCCccCccCCCCCccc-EEEeeCCc
Q 048125 86 EKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG---ILSVAEN-QLFGNIPSGLRNLVNLE-LLDLSGNQ 160 (258)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~ 160 (258)
...+..+++|++|++++|.+. .+|. +... ++++ .|++++| .+....+..+..+++|+ ++++++|.
T Consensus 98 -------~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 98 -------PDALKELPLLKFLGIFNTGLK-MFPD-LTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp -------TTSEECCTTCCEEEEEEECCC-SCCC-CTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred -------HHHhCCCCCCCEEeCCCCCCc-cccc-cccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 236778999999999999988 4665 4444 4777 9999999 88755566788999999 99999999
Q ss_pred cccccCCcccCccCCcEEEecCCc-cccccCCCCCCC-CCcceEecccccccccCCcccccCcCCcEEeccCCc
Q 048125 161 FTSRIPGSIGDLQKLQMLGLNGNK-FLGEIPSSIGNL-TLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNN 232 (258)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 232 (258)
+....+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|.+.+ +|.. .+++|+.|+++++.
T Consensus 168 l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 168 FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 98655666666 899999999995 886667789999 999999999999984 4443 67899999998874
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=166.54 Aligned_cols=227 Identities=20% Similarity=0.210 Sum_probs=173.0
Q ss_pred CCCCceEEecCCcccccccc---cccCCCCCcEEEeecccCCCCCCC-c--cccCCcceEEeccccccCcCCCccchhhh
Q 048125 21 LPNLEGLNLAGNQFTGPIPV---SISNASNLRELMIGKNGFSGKVPS-L--ENLHKLQRVIISQNHLGNYGEKDNLEFVN 94 (258)
Q Consensus 21 ~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~-~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 94 (258)
...++.+.+.++.++..... .+..+++|++|++++|.+....+. + ..+++|++|++++|.++..... ....
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW---LAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS---HHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh---hHHH
Confidence 34567788877766532111 122356799999999999765555 4 8899999999999998853221 1113
Q ss_pred ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCc--c--CccCCCCCcccEEEeeCCccccccCC---
Q 048125 95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN--I--PSGLRNLVNLELLDLSGNQFTSRIPG--- 167 (258)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~--- 167 (258)
.+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+... . +..+..+++|++|++++|.+.. .+.
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 217 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAF-PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA 217 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCC-TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccC-CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH
Confidence 44578999999999999985555555555 5899999999986421 2 2334678899999999999973 232
Q ss_pred -cccCccCCcEEEecCCccccccCCCCCCC---CCcceEecccccccccCCcccccCcCCcEEeccCCcccccccccccc
Q 048125 168 -SIGDLQKLQMLGLNGNKFLGEIPSSIGNL---TLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIG 243 (258)
Q Consensus 168 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 243 (258)
.+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|+|++ +|. +..
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~ 292 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDE 292 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTS
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhh
Confidence 35678999999999999997777777666 79999999999999 6677664 899999999999994 444 677
Q ss_pred ccCcceeEecCCCCC
Q 048125 244 LSSLSIYLDLSQNQL 258 (258)
Q Consensus 244 ~~~l~~~L~l~~n~~ 258 (258)
++.+ ++|++++|++
T Consensus 293 l~~L-~~L~L~~N~l 306 (310)
T 4glp_A 293 LPEV-DNLTLDGNPF 306 (310)
T ss_dssp CCCC-SCEECSSTTT
T ss_pred CCCc-cEEECcCCCC
Confidence 8999 9999999986
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=3e-26 Score=192.63 Aligned_cols=206 Identities=16% Similarity=0.171 Sum_probs=107.3
Q ss_pred CCCCcCcccCCCCcchhccCC----CCceEEecCCcccc----cccccccCCCCCcEEEeecccCCCCCCC------ccc
Q 048125 2 FDFPFNQLQGSLPSDLGFTLP----NLEGLNLAGNQFTG----PIPVSISNASNLRELMIGKNGFSGKVPS------LEN 67 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~ 67 (258)
|++++|.+++..+..++..++ +|++|++.+|.+++ .++..+..+++|++|++++|.+...... ...
T Consensus 61 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 140 (461)
T 1z7x_W 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140 (461)
T ss_dssp EECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred EeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcC
Confidence 445555555433444443344 46666666665553 2345555666666666666655321111 112
Q ss_pred cCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccc----cccccceEEecccccCCc---
Q 048125 68 LHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN----FSTRLGILSVAENQLFGN--- 140 (258)
Q Consensus 68 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~L~l~~~~~~~~--- 140 (258)
.++|++|++++|.++..+.. .+...+..+++|++|++++|.+....+..+.. ..++++.|++++|.+...
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~---~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCE---PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHH---HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred CCcceEEECCCCCCCHHHHH---HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 34566666666655542221 23445556677777777777665332222221 123677777777766532
Q ss_pred -cCccCCCCCcccEEEeeCCcccccc-----CCcccCccCCcEEEecCCccccc----cCCCCCCCCCcceEeccccccc
Q 048125 141 -IPSGLRNLVNLELLDLSGNQFTSRI-----PGSIGDLQKLQMLGLNGNKFLGE----IPSSIGNLTLLMTLNFAENMLE 210 (258)
Q Consensus 141 -~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 210 (258)
++..+..+++|++|++++|.+.... +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 2444445666777777776655321 12222355666666666665532 3444445556666666666554
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=2e-26 Score=193.67 Aligned_cols=255 Identities=23% Similarity=0.258 Sum_probs=155.7
Q ss_pred CCCCcCcccC----CCCcchhccCCCCceEEecCCccccccccccc-----CCCCCcEEEeecccCCCCCC-----Cccc
Q 048125 2 FDFPFNQLQG----SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSIS-----NASNLRELMIGKNGFSGKVP-----SLEN 67 (258)
Q Consensus 2 l~~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~-----~~~~ 67 (258)
|++++|.+++ .++..+. ++++|++|++.+|.+++..+..+. ..++|++|++++|.+..... .+..
T Consensus 90 L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 168 (461)
T 1z7x_W 90 LSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EEccCCCCCHHHHHHHHHHHc-cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh
Confidence 5677777773 2344444 577888888887776643333222 23456666666666543221 1333
Q ss_pred cCCcceEEeccccccCcCCC--------------------------ccchhhhccccCCCCcEEEeecccccccc----c
Q 048125 68 LHKLQRVIISQNHLGNYGEK--------------------------DNLEFVNSLVNASRLELLQISDNNFGGML----P 117 (258)
Q Consensus 68 l~~L~~L~l~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~ 117 (258)
+++|++|++++|.+...+.. ....++..+..+++|++|++++|.+.+.. .
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence 45555555555544321110 00013344555677777777777654321 1
Q ss_pred ccccccccccceEEecccccCCc----cCccCCCCCcccEEEeeCCccccccCCccc-----CccCCcEEEecCCccccc
Q 048125 118 EAVGNFSTRLGILSVAENQLFGN----IPSGLRNLVNLELLDLSGNQFTSRIPGSIG-----DLQKLQMLGLNGNKFLGE 188 (258)
Q Consensus 118 ~~~~~~~~~l~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~ 188 (258)
..+....++++.|++++|.+... ++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.+.
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 22222234677777777766532 344555567788888888777543222222 225788888888877643
Q ss_pred ----cCCCCCCCCCcceEecccccccccCCccccc-----CcCCcEEeccCCcccc----ccccccccccCcceeEecCC
Q 048125 189 ----IPSSIGNLTLLMTLNFAENMLEGSIPSSLGK-----CQNLIVLDLYNNNLSG----TIPSEVIGLSSLSIYLDLSQ 255 (258)
Q Consensus 189 ----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~~~l~~----~~~~~~~~~~~l~~~L~l~~ 255 (258)
++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|++++ .++..+..++++ ++|++++
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L-~~L~l~~ 407 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL-RELDLSN 407 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC-CEEECCS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc-cEEECCC
Confidence 3455667788999999999887655544433 6789999999999885 677788888999 9999999
Q ss_pred CCC
Q 048125 256 NQL 258 (258)
Q Consensus 256 n~~ 258 (258)
|++
T Consensus 408 N~i 410 (461)
T 1z7x_W 408 NCL 410 (461)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 79
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.1e-22 Score=170.42 Aligned_cols=232 Identities=23% Similarity=0.282 Sum_probs=115.0
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCC-------------CcEEEeecccCCCCCCCccc
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASN-------------LRELMIGKNGFSGKVPSLEN 67 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~~~~~~ 67 (258)
+|++++|.+ +.+|..++ ++++|++|++.+|.+.+..|..+.++.+ +++|++++|.+...+..
T Consensus 15 ~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--- 89 (454)
T 1jl5_A 15 EPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--- 89 (454)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---
T ss_pred hhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---
Confidence 367788888 59999887 5999999999999888888888877765 48888888887664432
Q ss_pred cCCcceEEeccccccCcCCCc-cch-------hhhccccC-CCCcEEEeecccccccccccccccccccceEEecccccC
Q 048125 68 LHKLQRVIISQNHLGNYGEKD-NLE-------FVNSLVNA-SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138 (258)
Q Consensus 68 l~~L~~L~l~~~~~~~~~~~~-~~~-------~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 138 (258)
.++|++|++++|.++.++... .+. -...+... ++|++|++++|.+.+ +| .+..+ +++++|++++|.+.
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l-~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNS-SFLKIIDVDNNSLK 166 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTC-TTCCEEECCSSCCS
T ss_pred cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCC-CCCCEEECCCCcCc
Confidence 357777777777776532110 000 00000011 345555555554442 33 23322 34555555555443
Q ss_pred CccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccc
Q 048125 139 GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLG 218 (258)
Q Consensus 139 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 218 (258)
.+|..+ ++|++|++++|.+.+ .| .+..+++|++|++++|.+.+ +|... ++|++|++++|.+. .+|. ++
T Consensus 167 -~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~ 234 (454)
T 1jl5_A 167 -KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQ 234 (454)
T ss_dssp -CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CT
T ss_pred -ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cC
Confidence 222221 355555555555543 23 35555555666665555542 33221 35566666666655 4442 55
Q ss_pred cCcCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125 219 KCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ 257 (258)
Q Consensus 219 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~ 257 (258)
.+++|+.|++++|+++ .+|.. .+++ ++|++++|.
T Consensus 235 ~l~~L~~L~l~~N~l~-~l~~~---~~~L-~~L~l~~N~ 268 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLK-TLPDL---PPSL-EALNVRDNY 268 (454)
T ss_dssp TCTTCCEEECCSSCCS-SCCSC---CTTC-CEEECCSSC
T ss_pred CCCCCCEEECCCCcCC-ccccc---cccc-CEEECCCCc
Confidence 6666666666666666 33332 1444 555555554
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8e-22 Score=152.75 Aligned_cols=181 Identities=22% Similarity=0.308 Sum_probs=150.3
Q ss_pred CCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccccc
Q 048125 46 SNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125 (258)
Q Consensus 46 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 125 (258)
...++++++++.+..++..+. +.+++|++++|.++.... ..+..+++|++|++++|.+.+..+..+..+ +
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSD-------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-T 83 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCT-------TTTTTCTTCCEEECTTSCCCCCCTTTTTTC-T
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCH-------hHhcCcccCCEEECCCCcCCccCHhHhccC-C
Confidence 356789999998887776554 689999999999886432 357788999999999999885555445544 5
Q ss_pred ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA 205 (258)
Q Consensus 126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 205 (258)
+|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 89999999999886666778889999999999999987777778889999999999999986666688999999999999
Q ss_pred cccccccCCcccccCcCCcEEeccCCccccc
Q 048125 206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 206 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
+|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999877777888899999999999998744
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.7e-22 Score=159.13 Aligned_cols=193 Identities=24% Similarity=0.396 Sum_probs=148.4
Q ss_pred cCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125 20 TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA 99 (258)
Q Consensus 20 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (258)
.+++|++|++.++.++. ++ .+..+++|++|++++|.+..... +..+++|++|++++|.++.. ..+..+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~---------~~~~~l 106 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV---------SAIAGL 106 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC---------GGGTTC
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc---------hhhcCC
Confidence 47788899998888874 33 57788889999999888876665 78888899999998887653 256778
Q ss_pred CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179 (258)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 179 (258)
++|++|++++|.+.+ ++. +..+ ++|+.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 107 ~~L~~L~l~~n~l~~-~~~-l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 179 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-VTP-LAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179 (308)
T ss_dssp TTCCEEECTTSCCCC-CGG-GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCC-chh-hcCC-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEE
Confidence 889999998888873 343 4444 588888888887764322 6778888999999888874333 77888899999
Q ss_pred ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG 235 (258)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 235 (258)
+++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+++
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 98888874332 778888899999999887443 36788889999999888873
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.8e-22 Score=159.83 Aligned_cols=206 Identities=22% Similarity=0.341 Sum_probs=166.5
Q ss_pred EEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEE
Q 048125 27 LNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQ 106 (258)
Q Consensus 27 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 106 (258)
+.+....+.+.. .+..+++|++|+++++.+.... .+..+++|++|++++|.+... .. +..+++|++|+
T Consensus 24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~--------~~-~~~l~~L~~L~ 91 (308)
T 1h6u_A 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL--------AP-LKNLTKITELE 91 (308)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC--------GG-GTTCCSCCEEE
T ss_pred HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCC--------hh-HccCCCCCEEE
Confidence 344444444322 3456889999999999987654 688899999999999988753 22 78899999999
Q ss_pred eecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccc
Q 048125 107 ISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL 186 (258)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 186 (258)
+++|.+. .++ .+..+ ++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 92 L~~n~l~-~~~-~~~~l-~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 92 LSGNPLK-NVS-AIAGL-QSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CCSCCCS-CCG-GGTTC-TTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ccCCcCC-Cch-hhcCC-CCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 9999987 344 45544 589999999998874 33 37889999999999999985433 888999999999999998
Q ss_pred cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 187 GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 187 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+.. .+..++++ ++|++++|++
T Consensus 165 ~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L-~~L~l~~N~i 229 (308)
T 1h6u_A 165 DL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNL-FIVTLTNQTI 229 (308)
T ss_dssp CC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTC-CEEEEEEEEE
T ss_pred CC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCC-CEEEccCCee
Confidence 53 33 8899999999999999985433 788999999999999999544 37889999 9999998864
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=160.69 Aligned_cols=202 Identities=20% Similarity=0.161 Sum_probs=162.4
Q ss_pred CCCCceEEecCCcccccccccc--cCCCCCcEEEeecccCCCCCCC-----ccccCCcceEEeccccccCcCCCccchhh
Q 048125 21 LPNLEGLNLAGNQFTGPIPVSI--SNASNLRELMIGKNGFSGKVPS-----LENLHKLQRVIISQNHLGNYGEKDNLEFV 93 (258)
Q Consensus 21 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 93 (258)
+++|++|++.+|.+.+..|..+ .++++|++|++++|.+...... +..+++|++|++++|.+... .+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------~~ 162 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-------SC 162 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-------CT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-------hH
Confidence 5679999999999998888887 8899999999999999865442 35689999999999999763 33
Q ss_pred hccccCCCCcEEEeeccccccc--ccccc-cccccccceEEecccccCCccCc----cCCCCCcccEEEeeCCccccccC
Q 048125 94 NSLVNASRLELLQISDNNFGGM--LPEAV-GNFSTRLGILSVAENQLFGNIPS----GLRNLVNLELLDLSGNQFTSRIP 166 (258)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~--~~~~~-~~~~~~l~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~ 166 (258)
..+..+++|++|++++|.+.+. ++... ....++|++|++++|.+. .++. .+..+++|++|++++|.+.+..|
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 4677899999999999986532 22222 122358999999999886 2222 24677899999999999997667
Q ss_pred CcccCc---cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125 167 GSIGDL---QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG 235 (258)
Q Consensus 167 ~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 235 (258)
..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|.+++ +|. +..+++|+.|++++|.+++
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred hhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 666665 69999999999999 6677664 899999999999984 343 6788999999999999873
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.9e-23 Score=168.58 Aligned_cols=201 Identities=16% Similarity=0.226 Sum_probs=122.9
Q ss_pred CCCceEEecCCcccccccccccCCCCCcEEEeecccCCCC-C-CCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125 22 PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK-V-PSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA 99 (258)
Q Consensus 22 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (258)
++++.+++.++.+.+..+. +..+++|++|++++|.+... . ..+..+++|++|++++|.+++ ..+..+..+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-------~~~~~l~~~ 141 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-------PIVNTLAKN 141 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-------HHHHHHTTC
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-------HHHHHHhcC
Confidence 6677777777776654443 44667777777777765432 2 225666777777777776654 344456667
Q ss_pred CCCcEEEeecc-ccccc-ccccccccccccceEEeccc-ccCCc-cCccCCCCC-cccEEEeeCCc--cc-cccCCcccC
Q 048125 100 SRLELLQISDN-NFGGM-LPEAVGNFSTRLGILSVAEN-QLFGN-IPSGLRNLV-NLELLDLSGNQ--FT-SRIPGSIGD 171 (258)
Q Consensus 100 ~~L~~L~l~~~-~~~~~-~~~~~~~~~~~l~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~ 171 (258)
++|++|++++| .+.+. ++..+..+ ++|++|++++| .+... ++..+..++ +|++|++++|. +. ...+..+..
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 77777777777 44432 33333333 46777777777 55432 344455566 77777777773 32 233445556
Q ss_pred ccCCcEEEecCCc-cccccCCCCCCCCCcceEeccccc-ccccCCcccccCcCCcEEeccCC
Q 048125 172 LQKLQMLGLNGNK-FLGEIPSSIGNLTLLMTLNFAENM-LEGSIPSSLGKCQNLIVLDLYNN 231 (258)
Q Consensus 172 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~ 231 (258)
+++|++|++++|. +++..+..+..+++|++|++++|. +.......++.+++|+.|++++|
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 6777777777776 554555566667777777777774 33222234566777777777777
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=7.1e-24 Score=171.13 Aligned_cols=203 Identities=13% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccccc
Q 048125 46 SNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125 (258)
Q Consensus 46 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 125 (258)
++++.|+++++.+......+..+++|++|++++|.+... .+...+..+++|++|++++|.+.+..+..+..+ +
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-S 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC-T
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC-C
Confidence 444455554444444333333444455555554444320 123334444455555555444443333333332 3
Q ss_pred ccceEEeccc-ccCCc-cCccCCCCCcccEEEeeCC-ccccc-cCCcccCcc-CCcEEEecCCc--cc-cccCCCCCCCC
Q 048125 126 RLGILSVAEN-QLFGN-IPSGLRNLVNLELLDLSGN-QFTSR-IPGSIGDLQ-KLQMLGLNGNK--FL-GEIPSSIGNLT 197 (258)
Q Consensus 126 ~l~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~ 197 (258)
+|++|++++| .+... ++..+..+++|++|++++| .+.+. .+..+..++ +|++|++++|. ++ +.++..+..++
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 4555555444 23211 2223334444555555544 44321 233334444 45555554442 22 12233334444
Q ss_pred CcceEeccccc-ccccCCcccccCcCCcEEeccCCc-cccccccccccccCcceeEecCCC
Q 048125 198 LLMTLNFAENM-LEGSIPSSLGKCQNLIVLDLYNNN-LSGTIPSEVIGLSSLSIYLDLSQN 256 (258)
Q Consensus 198 ~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~l~~~L~l~~n 256 (258)
+|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++| ++|++++|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L-~~L~l~~~ 282 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL-KTLQVFGI 282 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC-CEEECTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC-CEEeccCc
Confidence 45555555544 333334444444555555555442 222222234444444 44554443
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=4e-21 Score=160.91 Aligned_cols=232 Identities=28% Similarity=0.352 Sum_probs=136.1
Q ss_pred CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125 1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (258)
+|++++|.++ .+|. +. ++++|++|++.+|.+++ +|.. ..+|++|++++|.+...+ .+..+++|++|++++|.
T Consensus 135 ~L~L~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 135 YLGVSNNQLE-KLPE-LQ-NSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp EEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred EEECcCCCCC-CCcc-cC-CCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence 3678889998 5883 44 69999999999998875 4433 258888888888887644 57778888888888887
Q ss_pred ccCcCCCc-----------cchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCC
Q 048125 81 LGNYGEKD-----------NLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLV 149 (258)
Q Consensus 81 ~~~~~~~~-----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 149 (258)
++..+... .+.....+..+++|++|++++|.+. .+|.. .++++.|++++|.+.. +|.. ++
T Consensus 207 l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 207 LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCcccc-cCcc---cC
Confidence 76532210 0001113455666777777776665 23321 1356666666665542 2222 24
Q ss_pred cccEEEeeCCccccc--cCCc-------------ccCc-cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccC
Q 048125 150 NLELLDLSGNQFTSR--IPGS-------------IGDL-QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSI 213 (258)
Q Consensus 150 ~L~~L~l~~~~~~~~--~~~~-------------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 213 (258)
+|++|++++|.+.+. .+.. +..+ ++|++|++++|.+.+ +|.. +++|++|++++|.++ .+
T Consensus 278 ~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l 352 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV 352 (454)
T ss_dssp TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence 555556655555431 1100 0111 366777777776663 4433 467888888888877 45
Q ss_pred CcccccCcCCcEEeccCCcccc--ccccccccc-------------cCcceeEecCCCCC
Q 048125 214 PSSLGKCQNLIVLDLYNNNLSG--TIPSEVIGL-------------SSLSIYLDLSQNQL 258 (258)
Q Consensus 214 ~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~-------------~~l~~~L~l~~n~~ 258 (258)
|. .+++|+.|++++|++++ .+|.++..+ +++ ++|++++|++
T Consensus 353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L-~~L~ls~N~l 408 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL-KQLHVETNPL 408 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcC-CEEECCCCcC
Confidence 54 36788888888888886 677777666 677 8888888864
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=5.4e-21 Score=148.06 Aligned_cols=180 Identities=21% Similarity=0.298 Sum_probs=151.7
Q ss_pred CCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125 22 PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS 100 (258)
Q Consensus 22 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (258)
++.+++++.++.++ .+|..+. +.++.|++++|.+...... +..+++|++|++++|.++... ...+..++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-------AGVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-------TTTTTTCT
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-------HhHhccCC
Confidence 46788999999888 4565554 6899999999999887765 889999999999999998633 33577899
Q ss_pred CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125 101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180 (258)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 180 (258)
+|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCcccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 99999999999984443444444 69999999999998656666788999999999999999777778999999999999
Q ss_pred cCCccccccCCCCCCCCCcceEeccccccccc
Q 048125 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS 212 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 212 (258)
++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 163 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 163 STNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999977777899999999999999999754
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=4.6e-21 Score=155.54 Aligned_cols=236 Identities=17% Similarity=0.137 Sum_probs=172.0
Q ss_pred CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC--ccccCCcce-EEeccc
Q 048125 3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLHKLQR-VIISQN 79 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~-L~l~~~ 79 (258)
+.++++++ ++|..+ .+++++|++.+|.++.+.+..|.++++|++|++++|.+....+. |..++++++ +.+.+|
T Consensus 15 ~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 15 LCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 44567888 899876 45899999999999976667899999999999999998654332 788888876 556668
Q ss_pred cccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEeccc-ccCCccCccCCCC-CcccEEEee
Q 048125 80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN-QLFGNIPSGLRNL-VNLELLDLS 157 (258)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~ 157 (258)
.++.+. +..+..+++|++|++++|.+....+...... .++..+++.++ .+....+..|... ..+++|+++
T Consensus 91 ~l~~l~-------~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 91 NLLYIN-------PEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp TCCEEC-------TTSBCCCTTCCEEEEEEECCSSCCCCTTCCB-SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred cccccC-------chhhhhccccccccccccccccCCchhhccc-chhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 787532 3467889999999999999874333333333 36777887654 4443334455554 468999999
Q ss_pred CCccccccCCcccCccCCcEEEecC-CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125 158 GNQFTSRIPGSIGDLQKLQMLGLNG-NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
+|.+..+.+..|. .++++++.+.+ |.++...+++|+.+++|+.|++++|.++...+.. +.+|+.|.+.++.-...
T Consensus 163 ~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 163 KNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK 238 (350)
T ss_dssp SSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC
T ss_pred cccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc
Confidence 9999866565554 46799999976 5666444457899999999999999998443333 45667777766533326
Q ss_pred cccccccccCcceeEecCCC
Q 048125 237 IPSEVIGLSSLSIYLDLSQN 256 (258)
Q Consensus 237 ~~~~~~~~~~l~~~L~l~~n 256 (258)
+| .+..+++| ++++++++
T Consensus 239 lP-~l~~l~~L-~~l~l~~~ 256 (350)
T 4ay9_X 239 LP-TLEKLVAL-MEASLTYP 256 (350)
T ss_dssp CC-CTTTCCSC-CEEECSCH
T ss_pred CC-CchhCcCh-hhCcCCCC
Confidence 66 47788889 99998753
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7.7e-24 Score=174.14 Aligned_cols=232 Identities=19% Similarity=0.240 Sum_probs=175.9
Q ss_pred CCCCcCcccCCCCcch---hccCCCCceEEecCCcc---cccccccc-------cCCCCCcEEEeecccCCCC-----CC
Q 048125 2 FDFPFNQLQGSLPSDL---GFTLPNLEGLNLAGNQF---TGPIPVSI-------SNASNLRELMIGKNGFSGK-----VP 63 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~---~~~~~~~~-------~~~~~L~~L~l~~~~~~~~-----~~ 63 (258)
|++++|.+++..+..+ ..++++|++|++.+|.+ ++..|..+ ..+++|++|++++|.+... +.
T Consensus 37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 116 (386)
T 2ca6_A 37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116 (386)
T ss_dssp EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH
Confidence 6788888886544432 23599999999998744 33444444 6889999999999998762 22
Q ss_pred CccccCCcceEEeccccccCcCCCccchhhhccccC---------CCCcEEEeecccccc-ccc---ccccccccccceE
Q 048125 64 SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA---------SRLELLQISDNNFGG-MLP---EAVGNFSTRLGIL 130 (258)
Q Consensus 64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~L~l~~~~~~~-~~~---~~~~~~~~~l~~L 130 (258)
.+..+++|++|++++|.++..+.. .+...+..+ ++|++|++++|.+.. .++ ..+... ++|+.|
T Consensus 117 ~l~~~~~L~~L~L~~n~l~~~~~~---~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L 192 (386)
T 2ca6_A 117 FLSKHTPLEHLYLHNNGLGPQAGA---KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTV 192 (386)
T ss_dssp HHHHCTTCCEEECCSSCCHHHHHH---HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC-TTCCEE
T ss_pred HHHhCCCCCEEECcCCCCCHHHHH---HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC-CCcCEE
Confidence 367889999999999988653222 233344445 899999999998863 333 233333 589999
Q ss_pred EecccccCCc-----cCccCCCCCcccEEEeeCCccc----cccCCcccCccCCcEEEecCCccccc----cCCCC--CC
Q 048125 131 SVAENQLFGN-----IPSGLRNLVNLELLDLSGNQFT----SRIPGSIGDLQKLQMLGLNGNKFLGE----IPSSI--GN 195 (258)
Q Consensus 131 ~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~--~~ 195 (258)
++++|.+... .+..+..+++|++|++++|.+. ...+..+..+++|++|++++|.+.+. ++..+ ..
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 9999987632 3336778899999999999985 35677888999999999999998764 45555 34
Q ss_pred CCCcceEecccccccc----cCCccc-ccCcCCcEEeccCCcccccc
Q 048125 196 LTLLMTLNFAENMLEG----SIPSSL-GKCQNLIVLDLYNNNLSGTI 237 (258)
Q Consensus 196 ~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~~~l~~~~ 237 (258)
+++|++|++++|.+.+ .++..+ ..+++|+.|++++|.+++..
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8999999999999986 377666 55899999999999999655
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=7.1e-23 Score=166.96 Aligned_cols=233 Identities=18% Similarity=0.230 Sum_probs=173.4
Q ss_pred CCCCCcCcccCCCCc---chhccCC-CCceEEecCCcccccccccccCC-----CCCcEEEeecccCCCCCCC-----cc
Q 048125 1 DFDFPFNQLQGSLPS---DLGFTLP-NLEGLNLAGNQFTGPIPVSISNA-----SNLRELMIGKNGFSGKVPS-----LE 66 (258)
Q Consensus 1 ~l~~~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~-----~~ 66 (258)
+|++++|.+++..+. ..+.+++ +|++|++++|.+++..+..+..+ ++|++|++++|.+...... +.
T Consensus 26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 105 (362)
T 3goz_A 26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence 378899999954441 3334588 89999999999998777777664 9999999999999765544 34
Q ss_pred cc-CCcceEEeccccccCcCCCccchhhhccccC-CCCcEEEeeccccccccc----ccccccccccceEEecccccCCc
Q 048125 67 NL-HKLQRVIISQNHLGNYGEKDNLEFVNSLVNA-SRLELLQISDNNFGGMLP----EAVGNFSTRLGILSVAENQLFGN 140 (258)
Q Consensus 67 ~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~~l~~L~l~~~~~~~~ 140 (258)
.+ ++|++|++++|.++..+.. .+...+..+ ++|++|++++|.+.+... ..+....++++.|++++|.+...
T Consensus 106 ~~~~~L~~L~Ls~N~l~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 106 AIPFTITVLDLGWNDFSSKSSS---EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHH---HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred hCCCCccEEECcCCcCCcHHHH---HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 44 7999999999999875443 334445553 699999999998875433 33333334899999999988755
Q ss_pred cCc----cCCCC-CcccEEEeeCCccccc----cCCcccC-ccCCcEEEecCCcccccc----CCCCCCCCCcceEeccc
Q 048125 141 IPS----GLRNL-VNLELLDLSGNQFTSR----IPGSIGD-LQKLQMLGLNGNKFLGEI----PSSIGNLTLLMTLNFAE 206 (258)
Q Consensus 141 ~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~ 206 (258)
.+. .+... ++|++|++++|.+... .+..+.. .++|++|++++|.+.+.. ...+..+++|++|++++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 443 33444 5999999999999852 3444444 459999999999987532 24567889999999999
Q ss_pred ccccc-------cCCcccccCcCCcEEeccCCccccc
Q 048125 207 NMLEG-------SIPSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 207 n~~~~-------~~~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
|.+.+ .++..+..+++|+.+++++|++.+.
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99542 2334566788999999999999855
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=3.3e-20 Score=160.22 Aligned_cols=210 Identities=30% Similarity=0.353 Sum_probs=139.3
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCc----------------
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL---------------- 65 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------- 65 (258)
|++++|.++ .+|. .+++|++|++++|.++. +|. .+++|++|++++|.+...+..+
T Consensus 66 L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~l 136 (622)
T 3g06_A 66 LVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 136 (622)
T ss_dssp EEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCC
T ss_pred EEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcC
Confidence 456666666 5665 25667777777666653 332 3455566666555554332210
Q ss_pred -cccCCcceEEeccccccCcCCCccchhhhcc--------------ccCCCCcEEEeecccccccccccccccccccceE
Q 048125 66 -ENLHKLQRVIISQNHLGNYGEKDNLEFVNSL--------------VNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL 130 (258)
Q Consensus 66 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 130 (258)
..+++|++|++++|.++..+.. +..+ ..+++|+.|++++|.+. .+|.. .++++.|
T Consensus 137 p~~l~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L 206 (622)
T 3g06_A 137 PVLPPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTL----PSELYKL 206 (622)
T ss_dssp CCCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred CCCCCCCCEEECcCCcCCCcCCc-----cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCCc----cchhhEE
Confidence 0125666666666666543211 1111 12266677777777665 33321 2467777
Q ss_pred EecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125 131 SVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE 210 (258)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 210 (258)
++++|.+. .++. .+++|++|++++|.+.+ .| ..+++|++|++++|.++ .+|. .+++|+.|++++|.+.
T Consensus 207 ~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 207 WAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp ECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC
T ss_pred ECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC
Confidence 77777665 3333 24789999999999985 44 45689999999999998 5665 6789999999999999
Q ss_pred ccCCcccccCcCCcEEeccCCcccccccccccc
Q 048125 211 GSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIG 243 (258)
Q Consensus 211 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 243 (258)
.+|..+..+++|+.|++++|.+++..+..+..
T Consensus 275 -~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp -SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred -cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 77888999999999999999999777665543
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=7.4e-20 Score=137.66 Aligned_cols=180 Identities=22% Similarity=0.229 Sum_probs=110.5
Q ss_pred ceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125 25 EGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE 103 (258)
Q Consensus 25 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 103 (258)
+.+++.++.++. +|..+ .++|++|++++|.+...... +..+++|++|++++|.++.... ..+..+++|+
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~ 79 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-------GVFNKLTSLT 79 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-------TTTTTCTTCC
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-------hhcCCCCCcC
Confidence 456666666653 34333 35788888888887765554 5677778888888777764321 2345667777
Q ss_pred EEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCC
Q 048125 104 LLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183 (258)
Q Consensus 104 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (258)
+|++++|.+. .++.......++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 80 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 80 YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 7777777766 333332222246777777776665444444566666777777776666555555666666777776666
Q ss_pred ccccccCCCCCCCCCcceEecccccccccCCcccccCcC
Q 048125 184 KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQN 222 (258)
Q Consensus 184 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 222 (258)
.+. ..+++|+.|++..|.+.+.+|..++.++.
T Consensus 159 ~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred Cee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 543 23456666666666666666666555433
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=9.6e-20 Score=138.18 Aligned_cols=134 Identities=22% Similarity=0.275 Sum_probs=68.9
Q ss_pred CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179 (258)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 179 (258)
++++.|++++|.+.+..+..+..+ ++|+.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 345555555555542222222222 3555555555555444445555555555555555555544444455555555555
Q ss_pred ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
+++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555444455555555555555555555444444555555555555555544
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.9e-19 Score=134.37 Aligned_cols=181 Identities=21% Similarity=0.217 Sum_probs=113.0
Q ss_pred cEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccc
Q 048125 49 RELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG 128 (258)
Q Consensus 49 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 128 (258)
+.++.+++.+...+..+ .++|++|++++|.++.... ..+..+++|++|++++|.+. .++...+...++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~ 79 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPN-------GVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLT 79 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCT-------TTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCCh-------hhhcccccCcEEECCCCccC-ccChhhcCCCCCcC
Confidence 34555555555444332 3467777777777664321 23556677777777777666 33333322234677
Q ss_pred eEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccc
Q 048125 129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENM 208 (258)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 208 (258)
+|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 77777776664444456667777777777777765555556677777777777777765544556677777777777776
Q ss_pred ccccCCcccccCcCCcEEeccCCccccccccccccccC
Q 048125 209 LEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSS 246 (258)
Q Consensus 209 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 246 (258)
+. +.+++|++++++.|++++.+|..+..++.
T Consensus 160 ~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 160 WD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp BC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 54 34556677777777777777766655543
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=138.57 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=99.1
Q ss_pred cceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCc
Q 048125 71 LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVN 150 (258)
Q Consensus 71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 150 (258)
-+.++++++.++.++. .+ .+.+++|++++|.+.+..+...+...++|+.|++++|.+....+..|..+++
T Consensus 13 ~~~l~~s~n~l~~iP~--------~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE--------HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TTEEECCSSCCSSCCS--------CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCEeEeCCCCcccCcc--------CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 3566777766654321 11 2345677777777664433333223346777777777666444556666777
Q ss_pred ccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccC
Q 048125 151 LELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYN 230 (258)
Q Consensus 151 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 230 (258)
|++|++++|.+....+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 77777777777655566667777777777777777666566677777777777777777666566666777777777777
Q ss_pred Ccccc
Q 048125 231 NNLSG 235 (258)
Q Consensus 231 ~~l~~ 235 (258)
|.+..
T Consensus 163 N~l~c 167 (220)
T 2v70_A 163 NPFNC 167 (220)
T ss_dssp CCEEC
T ss_pred cCCcC
Confidence 77663
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=3.2e-19 Score=152.44 Aligned_cols=188 Identities=23% Similarity=0.319 Sum_probs=146.9
Q ss_pred CCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCC
Q 048125 23 NLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRL 102 (258)
Q Consensus 23 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L 102 (258)
+|+.|++.++.+++ +|..+ .++|+.|++++|.+..++ ..+++|+.|++++|.++.++. +.. +|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~---------l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE---------LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---------CCT--TC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch---------hhc--CC
Confidence 89999999998886 55555 378999999999988655 457899999999998875321 222 89
Q ss_pred cEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125 103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182 (258)
Q Consensus 103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 182 (258)
++|++++|.+.+ +|. .+++|+.|++++|.+.. +|. .+++|++|++++|.+.+ .|. +. ++|++|++++
T Consensus 123 ~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 123 KHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 999999998884 565 23689999999998874 554 46789999999999885 555 55 7899999999
Q ss_pred CccccccCCCCCCCCCc-------ceEecccccccccCCcccccCcCCcEEeccCCcccccccccccccc
Q 048125 183 NKFLGEIPSSIGNLTLL-------MTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245 (258)
Q Consensus 183 ~~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 245 (258)
|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+.
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 9988 6666 543 67 99999999998 6788788899999999999999887777666543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=9.3e-19 Score=149.57 Aligned_cols=177 Identities=27% Similarity=0.383 Sum_probs=147.6
Q ss_pred CCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccccc
Q 048125 46 SNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125 (258)
Q Consensus 46 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 125 (258)
.+++.|++++|.+...+..+ +++|++|++++|.++.++ ..+++|++|++++|.+.+ +|. +. .
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip-----------~~l~~L~~L~Ls~N~l~~-ip~-l~---~ 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP-----------ELPASLEYLDACDNRLST-LPE-LP---A 120 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC-----------CCCTTCCEEECCSSCCSC-CCC-CC---T
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc-----------cccCCCCEEEccCCCCCC-cch-hh---c
Confidence 38999999999998765544 378999999999988532 346899999999999984 666 43 2
Q ss_pred ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA 205 (258)
Q Consensus 126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 205 (258)
+|+.|++++|.+.. +|. .+++|++|++++|.+.+ .|. .+++|++|++++|.+++ +|. +. ++|+.|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 89999999999874 555 57899999999999985 454 57899999999999985 676 65 999999999
Q ss_pred cccccccCCcccccCcCC-------cEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125 206 ENMLEGSIPSSLGKCQNL-------IVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 206 ~n~~~~~~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
+|.++ .+|. +.. +| +.|++++|+|+ .+|..+..++++ ++|+|++|++
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L-~~L~L~~N~l 242 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT-CTIILEDNPL 242 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT-EEEECCSSSC
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC-CEEEeeCCcC
Confidence 99998 5666 554 77 99999999999 789989999999 9999999986
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.2e-19 Score=134.99 Aligned_cols=133 Identities=26% Similarity=0.307 Sum_probs=78.0
Q ss_pred CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179 (258)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 179 (258)
++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCc-cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 556666666666654434444333 3566666666665533334455566666666666666654455556666666666
Q ss_pred ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
+++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6666665 45555566666666666666665444445555666666666666655
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.8e-19 Score=140.01 Aligned_cols=171 Identities=22% Similarity=0.348 Sum_probs=117.8
Q ss_pred cCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125 20 TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA 99 (258)
Q Consensus 20 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (258)
.+++|++|++.+|.+... + .+..+++|++|++++|.+..... +..+++|++|++++|.++.. ..+..+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~---------~~l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL---------SSLKDL 111 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG---------GGGTTC
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC---------hhhccC
Confidence 467788888887777643 2 46677788888888887776554 77777888888888777542 246677
Q ss_pred CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179 (258)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 179 (258)
++|++|++++|.+.+ + ..+..+ ++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 112 ~~L~~L~L~~n~i~~-~-~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 112 KKLKSLSLEHNGISD-I-NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184 (291)
T ss_dssp TTCCEEECTTSCCCC-C-GGGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCC-C-hhhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence 778888888777763 3 233433 4677777777776533 456667777777777777764433 67777777777
Q ss_pred ecCCccccccCCCCCCCCCcceEecccccccc
Q 048125 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEG 211 (258)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 211 (258)
+++|.+.+ ++ .+..+++|+.|++++|.+.+
T Consensus 185 L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 185 LSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 77777763 33 36777777777777777763
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=3.4e-18 Score=138.67 Aligned_cols=216 Identities=20% Similarity=0.148 Sum_probs=159.6
Q ss_pred ceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125 25 EGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE 103 (258)
Q Consensus 25 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 103 (258)
+++++++++++ .+|..+ .+++++|++++|.+...... |.++++|++|++++|.+..... ...+..+++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~------~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE------ADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC------TTSBCSCTTCC
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC------hhHhhcchhhh
Confidence 67888888888 566655 36899999999999887765 8999999999999998754211 12567788877
Q ss_pred E-EEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC-ccccccCCcccCcc-CCcEEEe
Q 048125 104 L-LQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN-QFTSRIPGSIGDLQ-KLQMLGL 180 (258)
Q Consensus 104 ~-L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l 180 (258)
. +.+..|.+. .++...+...++|++|++++|.+....+..+....++..+++.++ .+....+..|..+. .++.|++
T Consensus 83 ~~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 83 EIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EEEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhcccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 6 555667777 444444344469999999999987555555666678889999764 67666666777764 6899999
Q ss_pred cCCccccccCCCCCCCCCcceEeccc-ccccccCCcccccCcCCcEEeccCCccccccc-cccccccCcceeEec
Q 048125 181 NGNKFLGEIPSSIGNLTLLMTLNFAE-NMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP-SEVIGLSSLSIYLDL 253 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~l~~~L~l 253 (258)
++|.+++ ++.......+|+++++.+ |.+....+..+..+++|+.|++++|+|+ .+| ..+..++.| +.++.
T Consensus 162 ~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L-~~l~~ 233 (350)
T 4ay9_X 162 NKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL-RARST 233 (350)
T ss_dssp CSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEE-ECTTC
T ss_pred ccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHh-hhccC
Confidence 9999984 444444567899999985 6666444456789999999999999999 455 456555555 44443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=5.1e-19 Score=139.83 Aligned_cols=189 Identities=23% Similarity=0.354 Sum_probs=145.5
Q ss_pred CceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125 24 LEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE 103 (258)
Q Consensus 24 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 103 (258)
+..+.+....+++.. .+..+++|+.|++++|.+... +.+..+++|++|++++|.++.. . .+..+++|+
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~--------~-~l~~l~~L~ 93 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI--------K-PLANLKNLG 93 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCC--------G-GGTTCTTCC
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCC--------c-ccccCCCCC
Confidence 333445555554322 345688899999999988765 3478889999999999988753 2 277889999
Q ss_pred EEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCC
Q 048125 104 LLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183 (258)
Q Consensus 104 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (258)
+|++++|.+. .++. +..+ ++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 94 ~L~l~~n~l~-~~~~-l~~l-~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 94 WLFLDENKVK-DLSS-LKDL-KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp EEECCSSCCC-CGGG-GTTC-TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred EEECCCCcCC-CChh-hccC-CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence 9999999887 3433 4444 5899999999987643 4567788999999999988854 56788899999999999
Q ss_pred ccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125 184 KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG 235 (258)
Q Consensus 184 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 235 (258)
.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 9885444 8888999999999999884 44 37889999999999998873
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=6.3e-19 Score=143.53 Aligned_cols=176 Identities=24% Similarity=0.177 Sum_probs=85.6
Q ss_pred cEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccc-cCCCCcEEEeeccccccccccccccccccc
Q 048125 49 RELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLV-NASRLELLQISDNNFGGMLPEAVGNFSTRL 127 (258)
Q Consensus 49 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 127 (258)
+.++++++.+..++..+. ..++.|++++|.++.... ..+. .+++|+.|++++|.+.+..+..+..+ ++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~-------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L 90 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRA-------EWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNL 90 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECT-------TSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccCh-------hhhhhcccccCEEECCCCcCCccChhhccCC-CCC
Confidence 456666666655444332 346666666666654221 1233 45566666666665553222223332 355
Q ss_pred ceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCC---CCCCCcceEec
Q 048125 128 GILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI---GNLTLLMTLNF 204 (258)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l 204 (258)
+.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..| ..+++|+.|++
T Consensus 91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 555555555543333444555555555555555554445555555555555555555553222222 33455555555
Q ss_pred ccccccccCCcccccCcC--CcEEeccCCccc
Q 048125 205 AENMLEGSIPSSLGKCQN--LIVLDLYNNNLS 234 (258)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~--L~~L~l~~~~l~ 234 (258)
++|.+....+..+..++. ++.|++++|.+.
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 555555333333444443 244555555444
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=8.6e-19 Score=130.69 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=83.7
Q ss_pred CCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEE
Q 048125 99 ASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQML 178 (258)
Q Consensus 99 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 178 (258)
+++|+.|++++|.+. .++ .+..+ +++++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l-~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYA-HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGC-TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcC-CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 344555555555444 333 22222 35555555555332 12234555666666666666654455556666666666
Q ss_pred EecCCccccccCCCCCCCCCcceEeccccc-ccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125 179 GLNGNKFLGEIPSSIGNLTLLMTLNFAENM-LEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ 257 (258)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~ 257 (258)
++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|++++ ++ .+..++.+ ++|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L-~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL-NQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC-CEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC-CEEEeeCcc
Confidence 666666665455556666666666666665 44 333 45666666666666666663 33 55666666 666666665
Q ss_pred C
Q 048125 258 L 258 (258)
Q Consensus 258 ~ 258 (258)
|
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 4
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.8e-18 Score=149.20 Aligned_cols=172 Identities=22% Similarity=0.346 Sum_probs=126.8
Q ss_pred cCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125 20 TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA 99 (258)
Q Consensus 20 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (258)
.+++|+.|++.+|.+... + .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---------~~l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL---------SSLKDL 108 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC---------TTSTTC
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC---------hhhccC
Confidence 477888888888877643 3 57778888888888888776554 77888888888888877642 256677
Q ss_pred CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179 (258)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 179 (258)
++|+.|++++|.+.+ ++ .+..+ ++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 109 ~~L~~L~Ls~N~l~~-l~-~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-IN-GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181 (605)
T ss_dssp TTCCEEECTTSCCCC-CG-GGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCEEEecCCCCCC-Cc-cccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence 888888888887763 33 34444 5788888888877643 556777888888888888875444 77788888888
Q ss_pred ecCCccccccCCCCCCCCCcceEeccccccccc
Q 048125 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS 212 (258)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 212 (258)
+++|.+.+ + ..+..+++|+.|++++|.+.+.
T Consensus 182 Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 182 LSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 88888774 3 3577788888888888887643
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=4.5e-18 Score=128.97 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=126.5
Q ss_pred cEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccc
Q 048125 49 RELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG 128 (258)
Q Consensus 49 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 128 (258)
+.++++++.+..++..+ ...+++|++++|.++.... ...+..+++|++|++++|.+.+..+..+..+ ++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEA------TGIFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVN 84 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECC------CCCGGGCTTCCEEECCSSCCCEECTTTTTTC-TTCC
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCc------hhhhccCCCCCEEECCCCcCCEECHHHhCCC-CCCC
Confidence 58899999888766544 3467899999998875421 1246788999999999999885444455554 5899
Q ss_pred eEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccc
Q 048125 129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENM 208 (258)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 208 (258)
+|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999886666778889999999999999998778889999999999999999997778899999999999999999
Q ss_pred ccc
Q 048125 209 LEG 211 (258)
Q Consensus 209 ~~~ 211 (258)
+..
T Consensus 165 l~c 167 (220)
T 2v70_A 165 FNC 167 (220)
T ss_dssp EEC
T ss_pred CcC
Confidence 864
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=8.3e-19 Score=151.27 Aligned_cols=190 Identities=23% Similarity=0.367 Sum_probs=155.4
Q ss_pred CceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125 24 LEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE 103 (258)
Q Consensus 24 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 103 (258)
+..+.+....+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.... .+..+++|+
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~---------~l~~l~~L~ 90 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK---------PLTNLKNLG 90 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCG---------GGGGCTTCC
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCCh---------hhccCCCCC
Confidence 455566666665433 3567899999999999987654 5889999999999999987532 278899999
Q ss_pred EEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCC
Q 048125 104 LLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183 (258)
Q Consensus 104 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (258)
.|++++|.+. .++ .+..+ ++|+.|++++|.+.. + ..+..+++|++|++++|.+... ..+..+++|+.|++++|
T Consensus 91 ~L~Ls~N~l~-~l~-~l~~l-~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 91 WLFLDENKIK-DLS-SLKDL-KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp EEECCSSCCC-CCT-TSTTC-TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred EEECcCCCCC-CCh-hhccC-CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 9999999887 344 45544 589999999998874 2 4577889999999999999854 57889999999999999
Q ss_pred ccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125 184 KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 184 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
.+.+..| +..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+.
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 9986555 8899999999999999985 3 4578899999999999999843
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=3.1e-18 Score=127.69 Aligned_cols=105 Identities=21% Similarity=0.272 Sum_probs=59.9
Q ss_pred ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCc-cccccCCCCCCCCCcceEec
Q 048125 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK-FLGEIPSSIGNLTLLMTLNF 204 (258)
Q Consensus 126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 204 (258)
+++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|++|++
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNI 166 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEEC
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEEC
Confidence 44555555544443344445555666666666666654445555666666666666665 44 333 4566666777777
Q ss_pred ccccccccCCcccccCcCCcEEeccCCccc
Q 048125 205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
++|.+.+ ++ .+..+++|+.|++++|+|.
T Consensus 167 ~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 7776663 33 4566677777777777664
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.9e-18 Score=127.93 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=121.9
Q ss_pred cEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccc
Q 048125 49 RELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG 128 (258)
Q Consensus 49 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 128 (258)
+.++++++.+..++..+. ++|++|++++|.++... ...+..+++|++|++++|.+.+..+..+..+ ++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~-------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIP-------PGAFSPYKKLRRIDLSNNQISELAPDAFQGL-RSLN 83 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEEC-------TTSSTTCTTCCEEECCSSCCCEECTTTTTTC-SSCC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcC-------HhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-cCCC
Confidence 567888888877665543 68899999999887532 2256778899999999998885556666655 5899
Q ss_pred eEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccc
Q 048125 129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENM 208 (258)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 208 (258)
+|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99999998885555567788899999999999987778888889999999999999887666778888999999999998
Q ss_pred cc
Q 048125 209 LE 210 (258)
Q Consensus 209 ~~ 210 (258)
+.
T Consensus 164 ~~ 165 (220)
T 2v9t_B 164 FI 165 (220)
T ss_dssp EE
T ss_pred cC
Confidence 75
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.7e-17 Score=135.06 Aligned_cols=179 Identities=26% Similarity=0.235 Sum_probs=143.7
Q ss_pred CcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCC
Q 048125 70 KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLV 149 (258)
Q Consensus 70 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 149 (258)
.-+.++++++.++.++. .+ .+.++.|++++|.+.+..+..+....++|+.|++++|.+....+..|..++
T Consensus 19 ~~~~l~c~~~~l~~iP~--------~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQ--------SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp ETTEEECCSSCCSSCCS--------SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCEEEeCCCCcCccCc--------cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 34788898888875432 22 245899999999998444433431346899999999999866677899999
Q ss_pred cccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCccc---ccCcCCcEE
Q 048125 150 NLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSL---GKCQNLIVL 226 (258)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L 226 (258)
+|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+ ..+++|+.|
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 99999999999997778889999999999999999998878899999999999999999985444444 568999999
Q ss_pred eccCCccccccccccccccCc-ceeEecCCCCC
Q 048125 227 DLYNNNLSGTIPSEVIGLSSL-SIYLDLSQNQL 258 (258)
Q Consensus 227 ~l~~~~l~~~~~~~~~~~~~l-~~~L~l~~n~~ 258 (258)
++++|+|++..+..+..++.+ +++|+|++|++
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 999999995444567777763 27899999985
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.2e-18 Score=135.60 Aligned_cols=170 Identities=22% Similarity=0.302 Sum_probs=117.6
Q ss_pred CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125 21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS 100 (258)
Q Consensus 21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (258)
+.++..+++..+.+++.. .+..+++|++|++++|.+.... .+..+++|++|++++|.++.. . .+..++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~--------~-~l~~l~ 85 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL--------S-PLKDLT 85 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC--------G-GGTTCS
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC--------h-hhccCC
Confidence 344666667777666432 4667777888888877776544 566777788888887777642 1 166777
Q ss_pred CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125 101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180 (258)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 180 (258)
+|++|++++|.+. .++.... ++++.|++++|.+.. + ..+..+++|++|++++|.+.+. + .+..+++|++|++
T Consensus 86 ~L~~L~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 86 KLEELSVNRNRLK-NLNGIPS---ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp SCCEEECCSSCCS-CCTTCCC---SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred CCCEEECCCCccC-CcCcccc---CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence 7888888888776 3333222 477888888877763 2 3466777888888888887743 3 5677788888888
Q ss_pred cCCccccccCCCCCCCCCcceEeccccccccc
Q 048125 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS 212 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 212 (258)
++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88887754 5677788888888888887643
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=4.8e-17 Score=124.06 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=121.5
Q ss_pred CCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccc
Q 048125 47 NLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR 126 (258)
Q Consensus 47 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 126 (258)
.-+.++.+++.+..++..+. ++|++|++++|.++... +..+..+++|++|++++|.+. .++...+...++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~-------~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~ 89 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLE-------PGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCC-------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccC-------HHHhhCccCCcEEECCCCCCC-CcChhhcccCCC
Confidence 35678888888776665443 78999999999888632 345778889999999999886 555444334468
Q ss_pred cceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccc
Q 048125 127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAE 206 (258)
Q Consensus 127 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 206 (258)
|+.|++++|.+....+..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 999999999887555666788899999999999988 5677788889999999999998866566788899999999999
Q ss_pred ccccc
Q 048125 207 NMLEG 211 (258)
Q Consensus 207 n~~~~ 211 (258)
|++..
T Consensus 169 N~~~c 173 (229)
T 3e6j_A 169 NPWDC 173 (229)
T ss_dssp SCBCT
T ss_pred CCccC
Confidence 98874
No 112
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=3.4e-19 Score=154.16 Aligned_cols=247 Identities=15% Similarity=0.136 Sum_probs=130.9
Q ss_pred CCCCcCcccC----CCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeec----------------------
Q 048125 2 FDFPFNQLQG----SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGK---------------------- 55 (258)
Q Consensus 2 l~~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~---------------------- 55 (258)
|++++|.+++ .++. +..++++|++|++.+|.+.+ .+..+.++++|++|.+++
T Consensus 197 L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~ 274 (592)
T 3ogk_B 197 LNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274 (592)
T ss_dssp EECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCE
T ss_pred EEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccc
Confidence 4566666651 2222 23357888888888876654 344455555555555543
Q ss_pred -----ccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccc-------
Q 048125 56 -----NGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF------- 123 (258)
Q Consensus 56 -----~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------- 123 (258)
+........+..+++|++|++++|.++.. .+...+..+++|++|+++.+ +.......+...
T Consensus 275 L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~------~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE------DHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp EEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred cCccccchhHHHHHHhhcCCCcEEecCCCcCCHH------HHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEE
Confidence 21111122244566777777777764331 11122344555555555422 211111111111
Q ss_pred -----------------------------ccccceEEecccccCCccCccCC-CCCcccEEEee----CCccccc-----
Q 048125 124 -----------------------------STRLGILSVAENQLFGNIPSGLR-NLVNLELLDLS----GNQFTSR----- 164 (258)
Q Consensus 124 -----------------------------~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~----~~~~~~~----- 164 (258)
+++|+.|++..+.+.......+. .+++|++|+++ .+.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 23444444433333322222222 24566666665 2233321
Q ss_pred cCCcccCccCCcEEEecCCc--cccccCCCC-CCCCCcceEecccccccc-cCCcccccCcCCcEEeccCCccccc-ccc
Q 048125 165 IPGSIGDLQKLQMLGLNGNK--FLGEIPSSI-GNLTLLMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLSGT-IPS 239 (258)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~-~~~ 239 (258)
.+..+.++++|++|++++|. +.+.....+ ..+++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 11224456777777776543 333222222 347788888888888865 3344557788999999999988744 344
Q ss_pred ccccccCcceeEecCCCCC
Q 048125 240 EVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 240 ~~~~~~~l~~~L~l~~n~~ 258 (258)
....++++ ++|+|++|++
T Consensus 508 ~~~~l~~L-~~L~ls~n~i 525 (592)
T 3ogk_B 508 AVTKLPSL-RYLWVQGYRA 525 (592)
T ss_dssp HHHHCSSC-CEEEEESCBC
T ss_pred HHHhcCcc-CeeECcCCcC
Confidence 44567888 9999998864
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.9e-17 Score=121.16 Aligned_cols=131 Identities=22% Similarity=0.240 Sum_probs=98.3
Q ss_pred cEEEeecccccccccccccccccccceEEecccccCCccCc-cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEec
Q 048125 103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPS-GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181 (258)
Q Consensus 103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 181 (258)
+.++++++.+. .+|..+. ..++.|++++|.+....+. .+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67788877775 6665443 3678888888877644443 36777888888888888877667778888888888888
Q ss_pred CCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237 (258)
Q Consensus 182 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 237 (258)
+|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 88887766677778888888888888887777777777888888888888777443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=5.6e-18 Score=131.88 Aligned_cols=171 Identities=22% Similarity=0.279 Sum_probs=139.9
Q ss_pred CCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccc
Q 048125 44 NASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123 (258)
Q Consensus 44 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 123 (258)
.+.+++.++++++.+.... .+..+++|++|++++|.++... .+..+++|+.|++++|.+.+ ++. +..+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~---------~l~~l~~L~~L~L~~N~i~~-~~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA---------GMQFFTNLKELHLSHNQISD-LSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT---------TGGGCTTCCEEECCSSCCCC-CGG-GTTC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch---------HHhhCCCCCEEECCCCccCC-Chh-hccC
Confidence 4566778888888887655 5788999999999999887532 56788999999999999884 444 5544
Q ss_pred ccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125 124 STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN 203 (258)
Q Consensus 124 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 203 (258)
++|+.|++++|.+.. ++... . ++|++|++++|.+.+. + .+..+++|+.|++++|.+++. + .+..+++|+.|+
T Consensus 85 -~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 85 -TKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLD 156 (263)
T ss_dssp -SSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEE
T ss_pred -CCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEE
Confidence 689999999998874 33322 2 8999999999999853 3 588999999999999999854 3 688899999999
Q ss_pred cccccccccCCcccccCcCCcEEeccCCccccc
Q 048125 204 FAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 204 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
+++|.+.+. ..+..+++|+.|++++|++.+.
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 999999855 6678899999999999999843
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.3e-20 Score=159.92 Aligned_cols=204 Identities=21% Similarity=0.181 Sum_probs=138.5
Q ss_pred cCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccC-cC-----CCccchhhhccccCCCCcEEE-eeccccccc
Q 048125 43 SNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGN-YG-----EKDNLEFVNSLVNASRLELLQ-ISDNNFGGM 115 (258)
Q Consensus 43 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~-----~~~~~~~~~~~~~~~~L~~L~-l~~~~~~~~ 115 (258)
..++.|+.|++++|.+...+..++.+++|++|++.+|.... .. ....-..+..+..+++|+.|+ ++.+.+. .
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence 34566666666666665554446666666666665443000 00 000002334455566666666 3443322 1
Q ss_pred ccc------cccc-cccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccc
Q 048125 116 LPE------AVGN-FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188 (258)
Q Consensus 116 ~~~------~~~~-~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 188 (258)
++. .+.. ....++.|++++|.+.. +|. ++.+++|++|++++|.+. ..|..+..+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 110 0000 01258899999998874 565 888899999999999998 678889999999999999999985
Q ss_pred cCCCCCCCCCcceEecccccccccC-CcccccCcCCcEEeccCCcccccccc---ccccccCcceeEec
Q 048125 189 IPSSIGNLTLLMTLNFAENMLEGSI-PSSLGKCQNLIVLDLYNNNLSGTIPS---EVIGLSSLSIYLDL 253 (258)
Q Consensus 189 ~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~l~~~L~l 253 (258)
+| .+..+++|+.|++++|.+.+.. |..++.+++|+.|++++|.+++..+. .+..+|.+ ++||+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L-~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV-SSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC-SEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc-CccCC
Confidence 66 7889999999999999998665 88999999999999999999954442 23347788 88864
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=6.2e-19 Score=152.55 Aligned_cols=157 Identities=13% Similarity=-0.006 Sum_probs=107.4
Q ss_pred cccCCCCcEEEeecccccccccccccccccccceEEeccc----ccCCc-----cCccCCCCCcccEEEeeCCc--cccc
Q 048125 96 LVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN----QLFGN-----IPSGLRNLVNLELLDLSGNQ--FTSR 164 (258)
Q Consensus 96 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~----~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~ 164 (258)
...+++|++|+++.+.+++..+..+...+++|+.|++..+ .+... ++..+..+++|++|+++.|. +.+.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 3457888888887777765555555554468999999743 33321 22224568899999998643 4433
Q ss_pred cCCcc-cCccCCcEEEecCCcccc-ccCCCCCCCCCcceEeccccccccc-CCcccccCcCCcEEeccCCcccccccccc
Q 048125 165 IPGSI-GDLQKLQMLGLNGNKFLG-EIPSSIGNLTLLMTLNFAENMLEGS-IPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241 (258)
Q Consensus 165 ~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 241 (258)
....+ ..+++|++|++++|.+++ .++..+..+++|++|++++|.+++. .+.....+++|+.|++++|++++.....+
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 33333 347899999999999875 3344557789999999999998644 34444678999999999999986543333
Q ss_pred -ccccCcceeEec
Q 048125 242 -IGLSSLSIYLDL 253 (258)
Q Consensus 242 -~~~~~l~~~L~l 253 (258)
..+|.+ ....+
T Consensus 534 ~~~~p~l-~~~~~ 545 (592)
T 3ogk_B 534 QMARPYW-NIELI 545 (592)
T ss_dssp GGCCTTE-EEEEE
T ss_pred HHhCCCc-EEEEe
Confidence 345655 44333
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=116.73 Aligned_cols=127 Identities=23% Similarity=0.289 Sum_probs=92.0
Q ss_pred cEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125 103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182 (258)
Q Consensus 103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 182 (258)
+.++.+++.+. .+|..+. +.++.|++++|.+. .+|..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 56777777666 5555433 46777888777776 5566677777788888888877766667777777888888888
Q ss_pred CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
|.+++..+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8777666667777778888888888777555555677777888888877765
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.2e-16 Score=128.50 Aligned_cols=227 Identities=14% Similarity=0.075 Sum_probs=143.8
Q ss_pred CCCcchhcc--------CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc-
Q 048125 12 SLPSDLGFT--------LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL- 81 (258)
Q Consensus 12 ~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~- 81 (258)
.+|...+.+ |++|+++.+.+ .++.+...+|.+|.+|+.+++.++.+...... |..+.++..+.......
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 456666667 88888888887 67766667788888888888888877654444 66655666555443211
Q ss_pred ---cCcCCCccchhhhccccCCCCc-EEEeecccccccccccccc---cccccceEEecccccCCccCccCCCCCcccEE
Q 048125 82 ---GNYGEKDNLEFVNSLVNASRLE-LLQISDNNFGGMLPEAVGN---FSTRLGILSVAENQLFGNIPSGLRNLVNLELL 154 (258)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~---~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L 154 (258)
..+. ...+..+..|+ .+.+.... .++..++. .+.++..+.+.+.-...........+++|+++
T Consensus 162 ~~~~~i~-------~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 162 RFKNRWE-------HFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL 231 (329)
T ss_dssp HTSTTTT-------TSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEE
T ss_pred hcccccc-------ccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEE
Confidence 1111 11344555555 34333221 12221111 11345555554432111111111236788888
Q ss_pred EeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcc-eEecccccccccCCcccccCcCCcEEeccCCcc
Q 048125 155 DLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM-TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL 233 (258)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l 233 (258)
++++|.+..+...+|.++++|+.+++.++ ++...+.+|..+++|+ .+++.+ .+....+..|.+|++|+.+++.+|++
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 88888887777778888888888888876 6656667888888888 888888 66656677888888888888888888
Q ss_pred ccccccccccccCcceeEe
Q 048125 234 SGTIPSEVIGLSSLSIYLD 252 (258)
Q Consensus 234 ~~~~~~~~~~~~~l~~~L~ 252 (258)
+...+.+|..+++| +++.
T Consensus 310 ~~I~~~aF~~~~~L-~~ly 327 (329)
T 3sb4_A 310 TTLGDELFGNGVPS-KLIY 327 (329)
T ss_dssp CEECTTTTCTTCCC-CEEE
T ss_pred CccchhhhcCCcch-hhhc
Confidence 85556678888888 6653
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=6.8e-17 Score=117.26 Aligned_cols=138 Identities=22% Similarity=0.263 Sum_probs=104.6
Q ss_pred cCCCCcEEEeeccccc-ccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCc
Q 048125 98 NASRLELLQISDNNFG-GMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQ 176 (258)
Q Consensus 98 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 176 (258)
..++|+.|++++|.+. +.+|..+..+ ++++.|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 4577889999888876 4566655544 5888888888887644 6677788888888888888765676767788888
Q ss_pred EEEecCCcccccc-CCCCCCCCCcceEecccccccccCC---cccccCcCCcEEeccCCcccccccc
Q 048125 177 MLGLNGNKFLGEI-PSSIGNLTLLMTLNFAENMLEGSIP---SSLGKCQNLIVLDLYNNNLSGTIPS 239 (258)
Q Consensus 177 ~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~ 239 (258)
+|++++|.+.+.. +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+. .+|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 8888888887432 2677888888888888888875444 36778888888888888877 4444
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=3.9e-16 Score=115.73 Aligned_cols=132 Identities=22% Similarity=0.247 Sum_probs=107.4
Q ss_pred cceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCc
Q 048125 71 LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVN 150 (258)
Q Consensus 71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 150 (258)
-+.++++++.++.++. .+. ++++.|++++|.+.+..+...+...++|++|++++|.+....+..+..+++
T Consensus 10 ~~~l~~s~~~l~~ip~--------~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR--------DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TTEEECTTSCCSSCCS--------CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CCEEEcCCCCcCcCcc--------CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 4788899888875432 222 379999999998874444333333368999999999988777888899999
Q ss_pred ccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccccc
Q 048125 151 LELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS 212 (258)
Q Consensus 151 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 212 (258)
|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+...
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999999999988888889999999999999999988888999999999999999998743
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=5.2e-19 Score=153.05 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=101.9
Q ss_pred ccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEec-------------
Q 048125 67 NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVA------------- 133 (258)
Q Consensus 67 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~------------- 133 (258)
.+++|++|++++|.+++. .+...+..+++|+.|++++| +.......+...+++|+.|++.
T Consensus 287 ~~~~L~~L~L~~~~l~~~------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSY------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HHTTCCEEECTTCCCCHH------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hhCCCCEEEccCCCCCHH------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 467888999888875531 12223456677777777766 3212112222222355555552
Q ss_pred ---------------------ccccCCccCccC-CCCCcccEEEee--C----Cccccc-----cCCcccCccCCcEEEe
Q 048125 134 ---------------------ENQLFGNIPSGL-RNLVNLELLDLS--G----NQFTSR-----IPGSIGDLQKLQMLGL 180 (258)
Q Consensus 134 ---------------------~~~~~~~~~~~~-~~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l 180 (258)
.+.+.......+ ..+++|++|+++ + +.++.. .+..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 222221111111 134566666666 2 233210 1112345566777777
Q ss_pred cCCccccccCCCCCC-CCCcceEecccccccccCCccc-ccCcCCcEEeccCCcccccccc-ccccccCcceeEecCCCC
Q 048125 181 NGNKFLGEIPSSIGN-LTLLMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPS-EVIGLSSLSIYLDLSQNQ 257 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~l~~~L~l~~n~ 257 (258)
++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++| ++|+|++|+
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L-~~L~l~~~~ 517 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM-RSLWMSSCS 517 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS-SEEEEESSC
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC-CEEeeeCCC
Confidence 55 443322223332 6788888888888765544444 5688899999999988644433 34457888 999998886
Q ss_pred C
Q 048125 258 L 258 (258)
Q Consensus 258 ~ 258 (258)
+
T Consensus 518 ~ 518 (594)
T 2p1m_B 518 V 518 (594)
T ss_dssp C
T ss_pred C
Confidence 4
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.3e-19 Score=155.32 Aligned_cols=177 Identities=20% Similarity=0.254 Sum_probs=139.1
Q ss_pred cccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccc-------------ccccccccccccccccceEE-
Q 048125 66 ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNN-------------FGGMLPEAVGNFSTRLGILS- 131 (258)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~l~~L~- 131 (258)
...+.|+.|++++|.++ .++..+..+++|+.|+++++. ..+..|..+..+ ++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~--------~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~ 416 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDP 416 (567)
T ss_dssp STTTTSSSCCCCHHHHH--------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCG
T ss_pred ccCccceeccCChhhHH--------hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcc
Confidence 56789999999999987 677888899999999986663 222334444443 4677776
Q ss_pred ecccccCCccCc------cCC--CCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125 132 VAENQLFGNIPS------GLR--NLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN 203 (258)
Q Consensus 132 l~~~~~~~~~~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 203 (258)
+..+.+.. ++. .+. ....|++|++++|.+.+ .|. +..+++|+.|++++|.++ .+|..++.+++|+.|+
T Consensus 417 l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 492 (567)
T 1dce_A 417 MRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ 492 (567)
T ss_dssp GGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred hhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEE
Confidence 33332210 000 000 01258999999999985 565 899999999999999999 7899999999999999
Q ss_pred cccccccccCCcccccCcCCcEEeccCCcccccc-ccccccccCcceeEecCCCCC
Q 048125 204 FAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI-PSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 204 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~l~~~L~l~~n~~ 258 (258)
+++|.+++ +| .++.+++|+.|++++|+|++.. |..+..+++| ++|+|++|++
T Consensus 493 Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L-~~L~L~~N~l 545 (567)
T 1dce_A 493 ASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL-VLLNLQGNSL 545 (567)
T ss_dssp CCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC-CEEECTTSGG
T ss_pred CCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC-CEEEecCCcC
Confidence 99999995 66 7899999999999999999665 8999999999 9999999975
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=7.6e-16 Score=112.69 Aligned_cols=132 Identities=22% Similarity=0.208 Sum_probs=101.6
Q ss_pred CcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEec
Q 048125 102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181 (258)
Q Consensus 102 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 181 (258)
.+.++++++.+. .+|..+. ++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 567888887776 5554433 478888888888775555567778888888888888886666677888888888888
Q ss_pred CCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237 (258)
Q Consensus 182 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 237 (258)
+|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 88888666666788888888888888888555555677888888888888887543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=4.2e-16 Score=113.06 Aligned_cols=130 Identities=28% Similarity=0.308 Sum_probs=80.8
Q ss_pred cccceEEecccccC-CccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125 125 TRLGILSVAENQLF-GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN 203 (258)
Q Consensus 125 ~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 203 (258)
++++.|++++|.+. ..+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45667777666654 34555556666677777777766643 5566666777777777766654555555566777777
Q ss_pred cccccccccC-CcccccCcCCcEEeccCCccccccc---cccccccCcceeEecCCCC
Q 048125 204 FAENMLEGSI-PSSLGKCQNLIVLDLYNNNLSGTIP---SEVIGLSSLSIYLDLSQNQ 257 (258)
Q Consensus 204 l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~l~~~L~l~~n~ 257 (258)
+++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..++.+ ++|++++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L-~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL-TYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC-CEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC-cEecCCCCC
Confidence 7777666321 1455666677777777777663322 256666666 777766664
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=9.4e-17 Score=114.16 Aligned_cols=128 Identities=24% Similarity=0.276 Sum_probs=91.7
Q ss_pred cccceEEecccccC-CccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125 125 TRLGILSVAENQLF-GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN 203 (258)
Q Consensus 125 ~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 203 (258)
++++.|++++|.+. ..++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46777777777665 34566666777788888887777644 5667777888888888887755666666678888888
Q ss_pred ccccccccc-CCcccccCcCCcEEeccCCccccccc---cccccccCcceeEecCC
Q 048125 204 FAENMLEGS-IPSSLGKCQNLIVLDLYNNNLSGTIP---SEVIGLSSLSIYLDLSQ 255 (258)
Q Consensus 204 l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~l~~~L~l~~ 255 (258)
+++|.+.+. .+..+..+++|+.|++++|++++..+ ..+..++++ ++||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L-~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL-TYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC-CEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc-ccccCCC
Confidence 888887742 23667778888888888888874443 367777888 8887763
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=5.2e-15 Score=121.69 Aligned_cols=153 Identities=10% Similarity=0.114 Sum_probs=92.5
Q ss_pred ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccc-----cccCCcc
Q 048125 95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT-----SRIPGSI 169 (258)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~ 169 (258)
.|..+++|+.+.+..+ +. .+....+.. .+++.+.+.. .+......+|..+++|+++.+.++.+. .+...+|
T Consensus 221 aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred HhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 4556666666666653 22 233333333 3566666633 233334556677777777777766543 3556677
Q ss_pred cCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccccccccc-Ccc
Q 048125 170 GDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS-SLS 248 (258)
Q Consensus 170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~l~ 248 (258)
.++++|+.+.+.. .++.....+|..|++|+.+.+..+ +.......|.+| +|+.+++.+|.+.......|..++ .+
T Consensus 297 ~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l- 372 (401)
T 4fdw_A 297 EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI- 372 (401)
T ss_dssp TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC-
T ss_pred hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc-
Confidence 7777777777763 455455567777777777777555 444556667777 777777777776644445566664 34
Q ss_pred eeEecCC
Q 048125 249 IYLDLSQ 255 (258)
Q Consensus 249 ~~L~l~~ 255 (258)
..|.+-.
T Consensus 373 ~~l~vp~ 379 (401)
T 4fdw_A 373 TVIRVPA 379 (401)
T ss_dssp CEEEECG
T ss_pred cEEEeCH
Confidence 5555543
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.8e-18 Score=149.72 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=41.9
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCC-ccccc-ccccccCCCCCcEEEeecccCCCCCCC-----ccccCCcceE
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGN-QFTGP-IPVSISNASNLRELMIGKNGFSGKVPS-----LENLHKLQRV 74 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L 74 (258)
|++.+|.+++..+..+...+++|++|++.+| .+++. ++..+.++++|++|++++|.+.+.... ...+++|++|
T Consensus 110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L 189 (594)
T 2p1m_B 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189 (594)
T ss_dssp EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE
T ss_pred EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE
Confidence 4455666665555555444677777777766 44432 222233566677777766664432211 1244455555
Q ss_pred Eecccc
Q 048125 75 IISQNH 80 (258)
Q Consensus 75 ~l~~~~ 80 (258)
++++|.
T Consensus 190 ~l~~~~ 195 (594)
T 2p1m_B 190 NISCLA 195 (594)
T ss_dssp ECTTCC
T ss_pred EecccC
Confidence 555553
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=2.8e-17 Score=144.95 Aligned_cols=139 Identities=21% Similarity=0.318 Sum_probs=77.2
Q ss_pred ccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCcc
Q 048125 65 LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG 144 (258)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 144 (258)
+..+..|+.|++++|.+.. ++..+..+++|++|++++|.+. .+|..+..+ ++|+.|++++|.+. .+|..
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~--------l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~Ls~N~l~-~lp~~ 288 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN--------ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL-SNLRVLDLSHNRLT-SLPAE 288 (727)
T ss_dssp --CCCCCCEEECTTSCCSC--------CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG-TTCCEEECTTSCCS-SCCSS
T ss_pred hccCCCCcEEECCCCCCCC--------CChhhcCCCCCCEEEeeCCcCc-ccChhhhCC-CCCCEEeCcCCcCC-ccChh
Confidence 5556666666666666553 2223335566666666666665 555555444 36666666666665 45556
Q ss_pred CCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCC-CcceEecccccccccCCc
Q 048125 145 LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLT-LLMTLNFAENMLEGSIPS 215 (258)
Q Consensus 145 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~ 215 (258)
++.+++|++|++++|.+. ..|..|..+++|++|++++|.+.+..|..+.... ....+++++|.+.+.+|.
T Consensus 289 ~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 666666666666666665 4455566666666666666666555444443221 112345556655544443
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.6e-14 Score=118.85 Aligned_cols=227 Identities=12% Similarity=0.102 Sum_probs=168.4
Q ss_pred ccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEeccccccCcCCC
Q 048125 9 LQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNHLGNYGEK 87 (258)
Q Consensus 9 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 87 (258)
++ .++...+.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+..... .|..+.+|+.+.+.++.++.++..
T Consensus 124 i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 124 VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 44 5666666665 7999998765 665666677774 699999987 3443333 388889999999998888765443
Q ss_pred ccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCC
Q 048125 88 DNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPG 167 (258)
Q Consensus 88 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 167 (258)
.+. +.+|+.+.+..+ +. .+....+..+.+|+.+.+..+ +......+|.. ++|+++.+.. .+..+...
T Consensus 199 -------aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~ 265 (401)
T 4fdw_A 199 -------TFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASR 265 (401)
T ss_dssp -------TTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTT
T ss_pred -------hEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChh
Confidence 233 578999998754 43 445555555568999998764 34334455665 7899999964 45557788
Q ss_pred cccCccCCcEEEecCCccc-----cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccc
Q 048125 168 SIGDLQKLQMLGLNGNKFL-----GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI 242 (258)
Q Consensus 168 ~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 242 (258)
+|..+++|+.+.+.++... ...+.+|..|++|+.+.+.+ .+.......+.+|.+|+.+.+..+ ++.....+|.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 9999999999999887654 35567899999999999995 466677788899999999999655 7745567888
Q ss_pred cccCcceeEecCCCC
Q 048125 243 GLSSLSIYLDLSQNQ 257 (258)
Q Consensus 243 ~~~~l~~~L~l~~n~ 257 (258)
.+ +| +++++++|.
T Consensus 344 ~~-~L-~~l~l~~n~ 356 (401)
T 4fdw_A 344 NT-GI-KEVKVEGTT 356 (401)
T ss_dssp SS-CC-CEEEECCSS
T ss_pred CC-CC-CEEEEcCCC
Confidence 88 89 999999875
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=111.88 Aligned_cols=128 Identities=22% Similarity=0.312 Sum_probs=100.1
Q ss_pred cceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCc
Q 048125 71 LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVN 150 (258)
Q Consensus 71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 150 (258)
-+.++++++.++.++. .+ .++++.|++++|.+. .+|..+..+ ++|+.|++++|.+....+..|..+++
T Consensus 12 ~~~l~~~~~~l~~ip~--------~~--~~~l~~L~L~~n~i~-~ip~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPK--------GI--PRDVTELYLDGNQFT-LVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp TTEEECTTSCCSSCCS--------CC--CTTCCEEECCSSCCC-SCCGGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEcCCCCCCcCCC--------CC--CCCCCEEECCCCcCc-hhHHHhhcc-cCCCEEECCCCcCCEeCHhHccCCCC
Confidence 3677888887764432 22 257888999988887 666656555 58899999988887666677888889
Q ss_pred ccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125 151 LELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE 210 (258)
Q Consensus 151 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 210 (258)
|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++|++.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999999888777778888889999999999888655567888889999999988875
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=5.1e-17 Score=143.26 Aligned_cols=184 Identities=23% Similarity=0.264 Sum_probs=114.2
Q ss_pred CCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCC--CccchhhhccccCCCCcEEEeeccccccccccccccc
Q 048125 46 SNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGE--KDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123 (258)
Q Consensus 46 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 123 (258)
+.++.|++.++.+......+ ++.+.|+.+.+..... .........+..++.|+.|++++|.+. .++..++.+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKY 246 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC
T ss_pred CccceEEeeCCCCCcchhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCC
Confidence 45666677666665433222 2333333333322110 000023446778899999999999988 777777766
Q ss_pred ccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125 124 STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN 203 (258)
Q Consensus 124 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 203 (258)
+.|+.|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..|+.+++|+.|+
T Consensus 247 -~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 247 -DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp -CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred -CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 58999999999988 78888899999999999999998 67888999999999999999998 7788899999999999
Q ss_pred cccccccccCCcccccCcC-CcEEeccCCcccccccc
Q 048125 204 FAENMLEGSIPSSLGKCQN-LIVLDLYNNNLSGTIPS 239 (258)
Q Consensus 204 l~~n~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~ 239 (258)
+++|.+.+.+|..+..... +..+++++|.+++.+|.
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 9999998777766644321 12355666666655443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=3.2e-15 Score=109.35 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=94.6
Q ss_pred CcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCC
Q 048125 70 KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLV 149 (258)
Q Consensus 70 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 149 (258)
..+.++++++.++.++. . ..++|+.|++++|.+.+..+..+..+ +++++|++++|.+....+..+..++
T Consensus 8 ~~~~l~~~~~~l~~~p~--------~--~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT--------G--IPSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLT 76 (177)
T ss_dssp ETTEEECCSSCCSSCCT--------T--CCTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEEecCCCCccCCC--------C--CCCCCcEEEeCCCcccEeCHHHhcCc-ccccEEECCCCcceEeChhHccCCC
Confidence 45677777777764321 1 23578888888888773333333333 5788888888887755555677788
Q ss_pred cccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccccc
Q 048125 150 NLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS 212 (258)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 212 (258)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 888888888888866666677888888888888888755555667788888888888887643
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=8.8e-15 Score=117.55 Aligned_cols=216 Identities=8% Similarity=0.002 Sum_probs=155.9
Q ss_pred CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccC----CCC-CCCccccCCcc-eEE
Q 048125 2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGF----SGK-VPSLENLHKLQ-RVI 75 (258)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~-~~~~~~l~~L~-~L~ 75 (258)
+++++ .++ .++...+.+|++|+++++.++.+..+.+..|.++.++..+....... ... ...|..+..|+ .+.
T Consensus 106 l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~ 183 (329)
T 3sb4_A 106 VILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ 183 (329)
T ss_dssp -CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEE
T ss_pred EECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEE
Confidence 45666 677 78888888999999999999988877788888887777776655221 111 12255666776 444
Q ss_pred eccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEE
Q 048125 76 ISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLD 155 (258)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 155 (258)
+.....-. . ..........+++.+.+.+.-.. .....+...+++++.+++.+|.+....+.+|..+++|++++
T Consensus 184 ~~~~~~l~--~----~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 184 VGAMGKLE--D----EIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp ECTTCCHH--H----HHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ecCCCcHH--H----HHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 43321100 0 11112223556777777665222 11222223346899999999888856667889999999999
Q ss_pred eeCCccccccCCcccCccCCc-EEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEec
Q 048125 156 LSGNQFTSRIPGSIGDLQKLQ-MLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDL 228 (258)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 228 (258)
+..+ +..+...+|.++++|+ .+++.+ .++...+.+|..|++|+.+++.+|.+....+..|.+|++|+.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9997 7767889999999999 999988 777677789999999999999999998788889999999999875
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.7e-15 Score=107.63 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=102.6
Q ss_pred cCCCCcEEEeeccccc-ccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCc
Q 048125 98 NASRLELLQISDNNFG-GMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQ 176 (258)
Q Consensus 98 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 176 (258)
..++++.|++++|.+. +.+|..+..+ ++++.|++++|.+... ..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3467888888888776 4566555544 5788888888877644 6677888999999999999865777777789999
Q ss_pred EEEecCCccccc-cCCCCCCCCCcceEecccccccccCC---cccccCcCCcEEeccC
Q 048125 177 MLGLNGNKFLGE-IPSSIGNLTLLMTLNFAENMLEGSIP---SSLGKCQNLIVLDLYN 230 (258)
Q Consensus 177 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~ 230 (258)
+|++++|.+++. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999998853 33678889999999999999986555 4678899999998763
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=2e-15 Score=110.32 Aligned_cols=135 Identities=20% Similarity=0.229 Sum_probs=105.7
Q ss_pred ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccC
Q 048125 95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK 174 (258)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 174 (258)
.+..+++|+.|++++|.+. .++ .+....++++.|++++|.+... ..+..+++|++|++++|.+....+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4566788999999999887 444 3444445899999999888743 56778889999999999888655566688889
Q ss_pred CcEEEecCCccccccCC--CCCCCCCcceEecccccccccCCc----ccccCcCCcEEeccCCcccc
Q 048125 175 LQMLGLNGNKFLGEIPS--SIGNLTLLMTLNFAENMLEGSIPS----SLGKCQNLIVLDLYNNNLSG 235 (258)
Q Consensus 175 L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~~~l~~ 235 (258)
|++|++++|.+. .+|. .+..+++|+.|++++|.+. ..|. .+..+++|+.|++++|.+.+
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999886 4554 6788889999999999987 4455 37788999999999888763
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=3.1e-15 Score=109.28 Aligned_cols=126 Identities=18% Similarity=0.166 Sum_probs=67.7
Q ss_pred ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA 205 (258)
Q Consensus 126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 205 (258)
+++.|++++|.+. .++......++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 20 ~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 5566666666554 2232222223566666666665533 345556666666666666653322333555666666666
Q ss_pred cccccccCCc--ccccCcCCcEEeccCCccccccccc----cccccCcceeEecCCCC
Q 048125 206 ENMLEGSIPS--SLGKCQNLIVLDLYNNNLSGTIPSE----VIGLSSLSIYLDLSQNQ 257 (258)
Q Consensus 206 ~n~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~l~~~L~l~~n~ 257 (258)
+|.+. .+|. .+..+++|+.|++++|.+. .++.. +..++.+ ++||+++|.
T Consensus 97 ~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L-~~Ld~~~n~ 151 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV-RVLDFQKVK 151 (176)
T ss_dssp SCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC-SEETTEECC
T ss_pred CCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc-ceeCCCcCC
Confidence 66654 2333 4555666666666666665 34432 5555666 666665553
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=7.6e-14 Score=101.26 Aligned_cols=107 Identities=23% Similarity=0.299 Sum_probs=92.6
Q ss_pred ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA 205 (258)
Q Consensus 126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 205 (258)
..+.++++++.+. .+|..+ .+.+++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 5678999998887 466554 3789999999999998778889999999999999999997667778999999999999
Q ss_pred cccccccCCcccccCcCCcEEeccCCcccc
Q 048125 206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLSG 235 (258)
Q Consensus 206 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 235 (258)
+|.+.+..+..+..+++|+.|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999997666678899999999999998874
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.5e-16 Score=118.67 Aligned_cols=112 Identities=27% Similarity=0.250 Sum_probs=57.7
Q ss_pred ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccC
Q 048125 95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK 174 (258)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 174 (258)
.+..+++|++|++++|.+.+ +| .+..+ ++++.|++++|.+. .+|..+..+++|++|++++|.+.+ .+ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l-~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGM-ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHH-TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccC-CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 45555666666666665552 33 33333 35666666665554 344444444556666666655553 22 3455555
Q ss_pred CcEEEecCCccccccC-CCCCCCCCcceEeccccccccc
Q 048125 175 LQMLGLNGNKFLGEIP-SSIGNLTLLMTLNFAENMLEGS 212 (258)
Q Consensus 175 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~ 212 (258)
|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 6666665555542111 2345555555555555555433
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=1.5e-13 Score=100.13 Aligned_cols=105 Identities=27% Similarity=0.366 Sum_probs=89.7
Q ss_pred cceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccc
Q 048125 127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAE 206 (258)
Q Consensus 127 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 206 (258)
.+.++++++.+. .+|..+. +.+++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 467888888876 5666553 7899999999999977788899999999999999999866566678999999999999
Q ss_pred ccccccCCcccccCcCCcEEeccCCccc
Q 048125 207 NMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 207 n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
|.+.+..+..+..+++|+.|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9998665566888999999999999988
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3.5e-13 Score=97.77 Aligned_cols=107 Identities=24% Similarity=0.292 Sum_probs=93.9
Q ss_pred CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125 101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180 (258)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 180 (258)
..+.++++++.+. .+|..+. ..++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4688999999887 6776553 58999999999998767888999999999999999999777888899999999999
Q ss_pred cCCccccccCCCCCCCCCcceEecccccccc
Q 048125 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEG 211 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 211 (258)
++|.+++..+..|..+++|+.|++++|++..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9999996666679999999999999999873
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=2.7e-15 Score=111.72 Aligned_cols=131 Identities=23% Similarity=0.263 Sum_probs=78.1
Q ss_pred CCCCceEEecCCcccccccc------cccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhh
Q 048125 21 LPNLEGLNLAGNQFTGPIPV------SISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVN 94 (258)
Q Consensus 21 ~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 94 (258)
.+.++.+++..+.+.+..|. .+..+++|++|++++|.+...+ .+..+++|+.|++++|.++.+ +.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l--------~~ 87 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI--------EN 87 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC--------SS
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc--------cc
Confidence 55666666666666555444 6777777778887777776644 566677777777777776632 22
Q ss_pred ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccC-ccCCCCCcccEEEeeCCcccc
Q 048125 95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIP-SGLRNLVNLELLDLSGNQFTS 163 (258)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 163 (258)
.+..+++|++|++++|.+. .++ .+..+ ++++.|++++|.+....+ ..+..+++|++|++++|++.+
T Consensus 88 ~~~~~~~L~~L~L~~N~l~-~l~-~~~~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIA-SLS-GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHHHHCSEEEEEEEECC-CHH-HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred hhhcCCcCCEEECcCCcCC-cCC-ccccC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 3344566777777777665 233 23333 356666666665542211 234455556666666665543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=7.1e-13 Score=96.46 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=92.5
Q ss_pred CcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEec
Q 048125 102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181 (258)
Q Consensus 102 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 181 (258)
-+.++++++.+. .+|..+. +.++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 478999999886 7776554 589999999999987678889999999999999999997777778999999999999
Q ss_pred CCccccccCCCCCCCCCcceEecccccccc
Q 048125 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEG 211 (258)
Q Consensus 182 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 211 (258)
+|.+.+..+..|..+++|+.|++++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999996655669999999999999999873
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=3.4e-15 Score=121.64 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=84.4
Q ss_pred CCcceEEeccccccCcCCCccchhhhcccc-CCCCcEEEeecccccccccccccccccccceEEecccccCCccCccC--
Q 048125 69 HKLQRVIISQNHLGNYGEKDNLEFVNSLVN-ASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-- 145 (258)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-- 145 (258)
+.|++|++++|.+++.... .+...+.. .++|++|++++|.+.......+.....+++.|++++|.+.+.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~---~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT---VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH---HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHH---HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 4556666666655442221 12222221 24566666666655433222232222356666666665543221111
Q ss_pred ---CCCCcccEEEeeCCccccc----cCCcccCccCCcEEEecCCcccc----ccCCCCCCCCCcceEecccccccccC-
Q 048125 146 ---RNLVNLELLDLSGNQFTSR----IPGSIGDLQKLQMLGLNGNKFLG----EIPSSIGNLTLLMTLNFAENMLEGSI- 213 (258)
Q Consensus 146 ---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~- 213 (258)
...+.|++|++++|.+... .+..+...++|++|++++|.+.+ .++..+..+++|++|++++|.+++..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 2345666667766666431 22333455667777777776653 22344555566777777777665422
Q ss_pred ---CcccccCcCCcEEeccCCccccc
Q 048125 214 ---PSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 214 ---~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
...+..+++|+.|++++|.|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 22333456677777777776643
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=1.1e-14 Score=118.55 Aligned_cols=159 Identities=19% Similarity=0.151 Sum_probs=117.7
Q ss_pred CCCCcEEEeeccccccccccc----ccccccccceEEecccccCCccCccC-CCCCcccEEEeeCCccccccCCcc----
Q 048125 99 ASRLELLQISDNNFGGMLPEA----VGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSI---- 169 (258)
Q Consensus 99 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---- 169 (258)
.+.|+.|++++|.++...... +......++.|++++|.+.......+ ..+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999886432222 22222589999999998764322222 345689999999999975433333
Q ss_pred -cCccCCcEEEecCCcccc----ccCCCCCCCCCcceEecccccccccC----CcccccCcCCcEEeccCCccccc----
Q 048125 170 -GDLQKLQMLGLNGNKFLG----EIPSSIGNLTLLMTLNFAENMLEGSI----PSSLGKCQNLIVLDLYNNNLSGT---- 236 (258)
Q Consensus 170 -~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~---- 236 (258)
...++|++|++++|.+.+ .++..+..+++|++|++++|.+.+.. ...+..+++|+.|++++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 246789999999999865 34445577899999999999987533 45566788999999999999853
Q ss_pred cccccccccCcceeEecCCCCC
Q 048125 237 IPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 237 ~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
++..+..+++| ++|||++|+|
T Consensus 231 l~~~L~~~~~L-~~L~Ls~N~i 251 (372)
T 3un9_A 231 LARAAREHPSL-ELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHCSSC-CEEECTTSSC
T ss_pred HHHHHHhCCCC-CEEeccCCCC
Confidence 34556677999 9999999986
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.4e-11 Score=99.47 Aligned_cols=105 Identities=20% Similarity=0.118 Sum_probs=85.2
Q ss_pred ceEEeccc-ccCCccCccCCCCCcccEEEeeC-CccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125 128 GILSVAEN-QLFGNIPSGLRNLVNLELLDLSG-NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA 205 (258)
Q Consensus 128 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 205 (258)
..++++++ .+. .+|. +..+++|++|++++ |.+....+..|..+++|+.|+|++|.+.+..|..|..+++|+.|+++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45677776 665 5777 88888999999996 88887777888999999999999999988778888999999999999
Q ss_pred cccccccCCcccccCcCCcEEeccCCcccc
Q 048125 206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLSG 235 (258)
Q Consensus 206 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 235 (258)
+|.+.+..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999855555555444 9999999998873
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=3.1e-10 Score=93.25 Aligned_cols=108 Identities=11% Similarity=0.174 Sum_probs=55.6
Q ss_pred cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125 144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL 223 (258)
Q Consensus 144 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 223 (258)
+|..++.|+.+.+..+... +...+|..++.|+.+.+. +.++.....+|..|.+|+.+++..+ +.......|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 3445556666666544322 444555555556655554 2333333445566666666666543 333444555556666
Q ss_pred cEEeccCCccccccccccccccCcceeEecCCC
Q 048125 224 IVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN 256 (258)
Q Consensus 224 ~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n 256 (258)
+.+.+..+ ++.....+|..|.+| ..+++.++
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L-~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTAL-NNIEYSGS 367 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTC-CEEEESSC
T ss_pred CEEEECcc-cCEEhHhHhhCCCCC-CEEEECCc
Confidence 66666433 442334455556666 55555543
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.22 E-value=4e-10 Score=92.64 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=62.1
Q ss_pred cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125 144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL 223 (258)
Q Consensus 144 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 223 (258)
.|..+.+|+++.+..+ +..+...+|..+.+|+.+++..+ ++.....+|..|.+|+.+++..+ +.......+.+|.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4555666777776654 44355666777777777777543 44444556777777777777665 444555667777777
Q ss_pred cEEeccCCccccccccccccccCccee
Q 048125 224 IVLDLYNNNLSGTIPSEVIGLSSLSIY 250 (258)
Q Consensus 224 ~~L~l~~~~l~~~~~~~~~~~~~l~~~ 250 (258)
+.+++..+ +. .+..+|..+.+| ++
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L-~~ 392 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKF-KW 392 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEE-EE
T ss_pred CEEEECCC-CE-EhhheecCCCCC-cE
Confidence 77777543 33 334556666666 54
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=4.6e-11 Score=96.48 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=85.8
Q ss_pred cEEEeecc-cccccccccccccccccceEEecc-cccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125 103 ELLQISDN-NFGGMLPEAVGNFSTRLGILSVAE-NQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180 (258)
Q Consensus 103 ~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 180 (258)
..++.+++ .+. .+|. +... .+|+.|++++ |.+....+..|..+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~-~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCC-CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35677777 676 6777 5554 5799999996 8887556678899999999999999999888889999999999999
Q ss_pred cCCccccccCCCCCCCCCcceEeccccccc
Q 048125 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLE 210 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 210 (258)
++|.+.+..+..+..++ |+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999865555666665 999999999986
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=1.8e-09 Score=88.69 Aligned_cols=223 Identities=14% Similarity=0.044 Sum_probs=156.7
Q ss_pred CCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchh
Q 048125 13 LPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEF 92 (258)
Q Consensus 13 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 92 (258)
+....+.+|.+|+.+.+... +..+....|.++.+|+.+.+..+-.......+..+..|+.+.+..+... .
T Consensus 153 i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~---------i 222 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY---------L 222 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE---------E
T ss_pred cchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE---------e
Confidence 44556678999999999765 3335566788999999999987633223334778888888877654321 1
Q ss_pred hhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCc
Q 048125 93 VNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDL 172 (258)
Q Consensus 93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 172 (258)
.........|+.+.+.... . .+....+..+..++.+.+..+... .....|..+..++.+......+ ....|..+
T Consensus 223 ~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~ 296 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGC 296 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTC
T ss_pred ehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccc
Confidence 1233345678888876542 2 223333334457888888765332 4456677788888888776543 34678889
Q ss_pred cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEe
Q 048125 173 QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLD 252 (258)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~ 252 (258)
.+|+.+.+.++ ++.....+|..+.+|+.+++..+ +.......+.+|.+|+.+.+..+ ++.....+|..+.+| +.++
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L-~~i~ 372 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL-KKVE 372 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC-CEEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC-CEEE
Confidence 99999999764 55455678999999999999765 55566788899999999999876 765556789999999 8888
Q ss_pred cCC
Q 048125 253 LSQ 255 (258)
Q Consensus 253 l~~ 255 (258)
+..
T Consensus 373 lp~ 375 (394)
T 4fs7_A 373 LPK 375 (394)
T ss_dssp EEG
T ss_pred ECC
Confidence 754
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=6.5e-09 Score=85.37 Aligned_cols=124 Identities=10% Similarity=0.121 Sum_probs=88.0
Q ss_pred cccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEec
Q 048125 125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNF 204 (258)
Q Consensus 125 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 204 (258)
..++.+.+..... .....+|..++.|+++.+.. .+..+...+|.++.+|+.+.+..+ ++.....+|..|.+|+++.+
T Consensus 265 ~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 4566666644322 23445677889999999974 455577789999999999999764 55566678999999999999
Q ss_pred ccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCC
Q 048125 205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN 256 (258)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n 256 (258)
..+ +.......|.+|.+|+.+++.++... ...+..+..| +.+.+..+
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L-~~i~i~~~ 388 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGL-QNLPVAPG 388 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCC-CEEEeCCC
Confidence 765 55566788999999999999998754 2456777888 88887654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=9.8e-11 Score=94.76 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=77.3
Q ss_pred ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccC--CCCCcccEEEeeCC--ccccc-----c
Q 048125 95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL--RNLVNLELLDLSGN--QFTSR-----I 165 (258)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~--~~~~~-----~ 165 (258)
.+..+|+|+.|.++++.-. .++. +. .++|+.|++..+.+.......+ ..+++|++|++..+ ...+. .
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~--~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP--RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB--CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc--CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 3455667777777665211 2222 11 2467777776655432221222 24566777766421 11100 0
Q ss_pred CCcc--cCccCCcEEEecCCccccccCCCC---CCCCCcceEecccccccccC----CcccccCcCCcEEeccCCccccc
Q 048125 166 PGSI--GDLQKLQMLGLNGNKFLGEIPSSI---GNLTLLMTLNFAENMLEGSI----PSSLGKCQNLIVLDLYNNNLSGT 236 (258)
Q Consensus 166 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~ 236 (258)
...+ ..+++|++|.+.+|.+.+..+..+ ..+++|++|+++.|.+.+.. +..+..+++|+.|++++|.|++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1112 235677777777776653221111 24677777777777766432 22334467777777777776644
Q ss_pred cccccccccCcceeEecCCC
Q 048125 237 IPSEVIGLSSLSIYLDLSQN 256 (258)
Q Consensus 237 ~~~~~~~~~~l~~~L~l~~n 256 (258)
....+...- . ..++++.+
T Consensus 323 ~~~~l~~al-g-~~~~~~~~ 340 (362)
T 2ra8_A 323 MKKELQKSL-P-MKIDVSDS 340 (362)
T ss_dssp HHHHHHHHC-C-SEEECCSB
T ss_pred HHHHHHHHc-C-CEEEecCC
Confidence 333332211 2 44555543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=2.4e-10 Score=92.46 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=103.2
Q ss_pred ccccCCCCcEEEeeccccc---------ccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcccccc
Q 048125 95 SLVNASRLELLQISDNNFG---------GMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI 165 (258)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 165 (258)
+...+++|+.|.+...... +.+...+. .+|.|+.|.+.++... .++. +. .++|++|++..+.+....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~-~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD-AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH-TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHh-cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence 3445677777777543221 01222222 3368999999887322 2333 33 789999999988876433
Q ss_pred CCccc--CccCCcEEEecCC--cccc-----ccCCCC--CCCCCcceEecccccccccCCcccc---cCcCCcEEeccCC
Q 048125 166 PGSIG--DLQKLQMLGLNGN--KFLG-----EIPSSI--GNLTLLMTLNFAENMLEGSIPSSLG---KCQNLIVLDLYNN 231 (258)
Q Consensus 166 ~~~~~--~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~~ 231 (258)
...+. .+++|++|+|+.+ ...+ .+...+ ..+|+|+.|++.+|.+.+..+..+. .+++|+.|+++.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 23333 6899999998532 1110 111223 3589999999999998754333332 4789999999999
Q ss_pred ccccc----cccccccccCcceeEecCCCCC
Q 048125 232 NLSGT----IPSEVIGLSSLSIYLDLSQNQL 258 (258)
Q Consensus 232 ~l~~~----~~~~~~~~~~l~~~L~l~~n~~ 258 (258)
.+.+. ++.++..+++| +.|+|++|++
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L-~~L~L~~n~i 319 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHL-KFINMKYNYL 319 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTC-SEEECCSBBC
T ss_pred CCChHHHHHHHhhcccCCcc-eEEECCCCcC
Confidence 99854 34455667899 9999999875
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=4.5e-08 Score=79.88 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=56.1
Q ss_pred cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125 144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL 223 (258)
Q Consensus 144 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 223 (258)
.+..+..|+++.+..+ +..+...+|..+.+++.+.+..+ +......+|..+++|+.+.+.++.+.......+.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444556666666543 33344455555556666655432 332333455666666666666655554455556666666
Q ss_pred cEEeccCCccccccccccccccCcceeEec
Q 048125 224 IVLDLYNNNLSGTIPSEVIGLSSLSIYLDL 253 (258)
Q Consensus 224 ~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l 253 (258)
+.+.+..+ ++.....+|..+.+| +.+.+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L-~~i~i 340 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKAL-STISY 340 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTC-CCCCC
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCC-CEEEE
Confidence 66666433 443334455555665 55554
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=4.4e-10 Score=82.46 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=63.4
Q ss_pred cccceEEeccc-ccCCc----cCccCCCCCcccEEEeeCCccccc----cCCcccCccCCcEEEecCCcccc----ccCC
Q 048125 125 TRLGILSVAEN-QLFGN----IPSGLRNLVNLELLDLSGNQFTSR----IPGSIGDLQKLQMLGLNGNKFLG----EIPS 191 (258)
Q Consensus 125 ~~l~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~ 191 (258)
+.+++|++++| .+.+. +...+...+.|++|++++|.+... ....+...++|++|++++|.+.+ .+..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 46777777776 55432 233444556677777777766532 22333444567777777776654 2344
Q ss_pred CCCCCCCcceEec--ccccccccC----CcccccCcCCcEEeccCCccc
Q 048125 192 SIGNLTLLMTLNF--AENMLEGSI----PSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 192 ~~~~~~~L~~L~l--~~n~~~~~~----~~~~~~~~~L~~L~l~~~~l~ 234 (258)
.+...++|++|++ ++|.+.+.. ...+...++|+.|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5555666777777 666665432 233344566777777766664
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.67 E-value=2.7e-06 Score=69.33 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=86.8
Q ss_pred cccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEec
Q 048125 125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNF 204 (258)
Q Consensus 125 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 204 (258)
..++.+.+..+ +......+|..+.+++.+.+..+ +......+|..+++|+.+.+.++.++.....+|..|.+|+.+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 46777777554 33234556777889999998764 44466778999999999999888887666778999999999999
Q ss_pred ccccccccCCcccccCcCCcEEeccCCcccccccccccccc
Q 048125 205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245 (258)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 245 (258)
..+ +.......+.+|.+|+.+.+..+ ++.....+|..+.
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 765 55466778889999999988654 5533445565554
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.66 E-value=5.7e-09 Score=74.99 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=75.1
Q ss_pred CCcccEEEeeCCccccccCCcccCccCCcEEEecCCc-cccccCCCCCC----CCCcceEeccccc-ccccCCcccccCc
Q 048125 148 LVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK-FLGEIPSSIGN----LTLLMTLNFAENM-LEGSIPSSLGKCQ 221 (258)
Q Consensus 148 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~n~-~~~~~~~~~~~~~ 221 (258)
...|++|+++++.++...-..+.++++|++|++++|. +++.--..+.. +++|++|++++|. +++.....+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3479999999999876655667889999999999985 55432233443 3579999999985 8776677778899
Q ss_pred CCcEEeccCC-cccccc---ccccccccCcceeEec
Q 048125 222 NLIVLDLYNN-NLSGTI---PSEVIGLSSLSIYLDL 253 (258)
Q Consensus 222 ~L~~L~l~~~-~l~~~~---~~~~~~~~~l~~~L~l 253 (258)
+|+.|++++| .|++.. ...-..+|.+...+|+
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~~~ 175 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKLDL 175 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEEEC
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEecc
Confidence 9999999998 465321 1122355666445543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=9e-09 Score=73.94 Aligned_cols=83 Identities=6% Similarity=0.039 Sum_probs=52.2
Q ss_pred ccceEEecccccCCccCccCCCCCcccEEEeeCCc-cccccCCcccC----ccCCcEEEecCCc-cccccCCCCCCCCCc
Q 048125 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ-FTSRIPGSIGD----LQKLQMLGLNGNK-FLGEIPSSIGNLTLL 199 (258)
Q Consensus 126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~L 199 (258)
.++.|++++|.+++..-..+..+++|++|++++|. +++..-..+.. .++|++|++++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57777777777665544455667777788877773 55332233333 2367777777774 554333345567777
Q ss_pred ceEeccccc
Q 048125 200 MTLNFAENM 208 (258)
Q Consensus 200 ~~L~l~~n~ 208 (258)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777775
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=6.7e-09 Score=76.07 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=7.8
Q ss_pred CCCCCcceEecccccc
Q 048125 194 GNLTLLMTLNFAENML 209 (258)
Q Consensus 194 ~~~~~L~~L~l~~n~~ 209 (258)
...++|++|++++|.+
T Consensus 148 ~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHCSSCCEEECCCSSH
T ss_pred HhCCCcCEEeccCCCC
Confidence 3344455555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=1.1e-06 Score=67.78 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=45.0
Q ss_pred CccCCcEEEecCCcccc--ccCCCCCCCCCcceEecccccccccCCcccccCc--CCcEEeccCCccccccc-------c
Q 048125 171 DLQKLQMLGLNGNKFLG--EIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQ--NLIVLDLYNNNLSGTIP-------S 239 (258)
Q Consensus 171 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~-------~ 239 (258)
.+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+. ..+..+. +|+.|++++|.+.+.+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45566667776666654 2334445666677777777766532 2233333 67777777777664333 2
Q ss_pred ccccccCcceeEe
Q 048125 240 EVIGLSSLSIYLD 252 (258)
Q Consensus 240 ~~~~~~~l~~~L~ 252 (258)
.+..+|+| ..||
T Consensus 246 il~~~P~L-~~LD 257 (267)
T 3rw6_A 246 IRERFPKL-LRLD 257 (267)
T ss_dssp HHHHCTTC-CEES
T ss_pred HHHHCccc-CeEC
Confidence 24555666 6555
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1.6e-06 Score=66.85 Aligned_cols=81 Identities=26% Similarity=0.303 Sum_probs=60.5
Q ss_pred CCCcccEEEeeCCccccc--cCCcccCccCCcEEEecCCccccc-cCCCCCCCCCcceEecccccccccCCc-------c
Q 048125 147 NLVNLELLDLSGNQFTSR--IPGSIGDLQKLQMLGLNGNKFLGE-IPSSIGNLTLLMTLNFAENMLEGSIPS-------S 216 (258)
Q Consensus 147 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~-------~ 216 (258)
.+++|++|++++|.+.+. .+..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|++.+..|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 467899999999999863 345667899999999999998753 11223333 899999999999865552 3
Q ss_pred cccCcCCcEEec
Q 048125 217 LGKCQNLIVLDL 228 (258)
Q Consensus 217 ~~~~~~L~~L~l 228 (258)
+..+++|+.|+-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 567899987763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.85 E-value=1.8e-06 Score=63.19 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=38.7
Q ss_pred ccceEEeccc-ccCCc----cCccCCCCCcccEEEeeCCcccccc----CCcccCccCCcEEEecCCcccc----ccCCC
Q 048125 126 RLGILSVAEN-QLFGN----IPSGLRNLVNLELLDLSGNQFTSRI----PGSIGDLQKLQMLGLNGNKFLG----EIPSS 192 (258)
Q Consensus 126 ~l~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~ 192 (258)
.++.|+++.+ .+.+. +.+++...+.|++|++++|.+.+.. ...+...+.|++|+|++|.+.+ .+.++
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4566666553 44321 2333444455666666666554322 2222334555556665555543 22334
Q ss_pred CCCCCCcceEeccc
Q 048125 193 IGNLTLLMTLNFAE 206 (258)
Q Consensus 193 ~~~~~~L~~L~l~~ 206 (258)
+...+.|++|++++
T Consensus 122 L~~N~tL~~L~L~n 135 (197)
T 1pgv_A 122 TLVTQSIVEFKADN 135 (197)
T ss_dssp TTTTCCCSEEECCC
T ss_pred HhhCCceeEEECCC
Confidence 44445555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=1.5e-05 Score=58.21 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=4.3
Q ss_pred CCCcEEEeec
Q 048125 46 SNLRELMIGK 55 (258)
Q Consensus 46 ~~L~~L~l~~ 55 (258)
+.|++|++++
T Consensus 41 ~~L~~L~L~~ 50 (197)
T 1pgv_A 41 TDLKEVNINN 50 (197)
T ss_dssp SSCCEEECTT
T ss_pred CCccEEECCC
Confidence 3444444443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00082 Score=45.73 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=35.3
Q ss_pred EEEecCCccc-cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125 177 MLGLNGNKFL-GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234 (258)
Q Consensus 177 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 234 (258)
.++.+++.++ ..+|..+. ++++.|++++|.++...+..+..+++|+.|++.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666654 23443332 45777777777777555556666777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.54 E-value=0.0032 Score=42.75 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=36.6
Q ss_pred eEEecCCccc-ccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccccc
Q 048125 26 GLNLAGNQFT-GPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLG 82 (258)
Q Consensus 26 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 82 (258)
.++.++.+++ ..+|..+ -.++++|+|++|.+..+... |..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666554 1344332 24578888888888776665 677788888888888664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.59 E-value=0.78 Score=29.18 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=29.8
Q ss_pred cccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecc
Q 048125 8 QLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKN 56 (258)
Q Consensus 8 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 56 (258)
.++ .+....+.+|.+|+.+.|... ++.+....|.+|.+|+.+.+.+.
T Consensus 7 ~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445 566666667777777777643 44455556677777777777554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.57 E-value=4.2 Score=25.73 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=19.8
Q ss_pred ccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125 143 SGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182 (258)
Q Consensus 143 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 182 (258)
.+|..+++|+++.+..+ +..+...+|..+.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34455555555555543 2224445555555555555544
Done!