BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048126
(863 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSN 549
IQ NVR ++L NK+ ++S +L L L+ N L+ + F + +L+ +
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 550 NHLLWKLPSGI-STLVSLEHLDLSGTAITHLPIEL-QKLVNLKCLNLEYMYNLNQFPRLV 607
N L LP G+ L +L +L+L+ + LP + KL NL L+L Y L P V
Sbjct: 119 NQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGV 176
Query: 608 MSAFSKLQVLRILKSNV 624
++L+ LR+ ++ +
Sbjct: 177 FDKLTQLKDLRLYQNQL 193
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSN 549
IQ NVR ++L NK+ ++S +L L L+ N L+ + F + +L+ +
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 550 NHLLWKLPSGI-STLVSLEHLDLSGTAITHLPIEL-QKLVNLKCLNLEYMYNLNQFPRLV 607
N L LP G+ L +L +L L + LP + KL NL L+L+ NQ L
Sbjct: 119 NQ-LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN----NQLQSLP 173
Query: 608 MSAFSKLQVLRILKSN 623
F KL L+ L N
Sbjct: 174 EGVFDKLTQLKQLSLN 189
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 453 KMHDVIRDMVLWIACKIEKEKENFLVHAGLGLTEAPE--IQNWRNVRRMSLMKNKIENLS 510
K+HD I+ E +L+ G L P N++ + L++N++++L
Sbjct: 74 KLHD--------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 511 ET--PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGI-STLVSLE 567
+ +L L+L N L+ + F + +L ++ NN L LP G+ L L+
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQLK 184
Query: 568 HLDLSGTAITHLP 580
L L+ + +P
Sbjct: 185 QLSLNDNQLKSVP 197
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 507 ENLSETPT-CPHLLS-LFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLV 564
+ L+E PT P ++ + L N++K+I F LR ++SNN + P L
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 565 SLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRIL 620
SL L L G IT LP + L + N N+ L + AF L L +L
Sbjct: 81 SLNSLVLYGNKITELP---KSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLL 133
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 483 GLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMP 540
GLT A ++ + L NKI + + C +L L L + + I GD F +
Sbjct: 23 GLTAA--------MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 541 SLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIE--LQKLVNLKCLNLEYMY 598
SL ++S+NHL S L SL++L+L G L + L NL+ L + +
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 599 NLNQFPRLVMSAFSKLQVLRI 619
++ R+ + + L L I
Sbjct: 135 TFSEIRRIDFAGLTSLNELEI 155
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 483 GLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMP 540
GLT A ++ + L NKI + + C +L L L + + I GD F +
Sbjct: 49 GLTAA--------MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 100
Query: 541 SLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIE--LQKLVNLKCLNLEYMY 598
SL ++S+NHL S L SL++L+L G L + L NL+ L + +
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 160
Query: 599 NLNQFPRLVMSAFSKLQVLRI 619
++ R+ + + L L I
Sbjct: 161 TFSEIRRIDFAGLTSLNELEI 181
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 518 LLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGI-STLVSLEHLDLSGTAI 576
L L+L N L+ + F + SL N+S N L LP+G+ L L+ L L+ +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQL 112
Query: 577 THLPIEL-QKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVL 617
LP + KL LK L L Y L P V + LQ +
Sbjct: 113 QSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYI 153
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 496 VRRMSLMKNKIENLSET--PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL 553
+R + L NK++ L +L +L+++DN L+ + F + +L + N L
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 554 WKLPSGISTLVSLEHLDLSGTAITHLPIEL-QKLVNLKCLNLEYMYNLNQFPRLVMSAFS 612
P +L L +L L + LP + KL +LK L L YN NQ R+ AF
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL---YN-NQLKRVPEGAFD 178
Query: 613 KLQVLRILK 621
KL L+ LK
Sbjct: 179 KLTELKTLK 187
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 495 NVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHL 552
+ +++ L NK+ +L L L+L+DN L+ + F+ + +L +++N
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK- 96
Query: 553 LWKLPSGI-STLVSLEHLDLSGTAITHLPIEL-QKLVNLKCLNLEYMYNLNQFPRLVMSA 610
L LP G+ LV+L L L + LP + L L L+L Y L P+ V
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDK 155
Query: 611 FSKLQVLRI 619
+ L+ LR+
Sbjct: 156 LTSLKELRL 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 507 ENLSETPT-CPHLLS-LFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLV 564
+ L+E PT P ++ + L N++K+I F LR ++SNN + P L
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 565 SLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRIL 620
SL L L G IT LP + L + N N+ L + AF L L +L
Sbjct: 81 SLNSLVLYGNKITELP---KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 27/208 (12%)
Query: 485 TEAPEIQNWRNVRRMSLMKNKIE--NLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSL 542
E N N+R + L N+++ L +L L +S+N + ++ FQ + +L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 543 RVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYM---- 597
+ + +N L++ S L SLE L L +T +P E L L L L L ++
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
Query: 598 ---YNLNQFPRLVMSAFSKLQVLRILKSNVLFGGH---------QFLVEELMGMKHLMAL 645
Y+ + RL + S L + N L+G + + ++HL+ L
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250
Query: 646 --------TITLKSWEALQELLISQELQ 665
I+ L ELL QE+Q
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQ 278
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 525 DNSLKMIAGDFFQFMPSLRVFNMSN-NHLLWKLPSGISTLVSLEHLDLSGTAITHLPIEL 583
++ L++I D F +P L + N+LL+ P L +L++L +S T I HLP ++
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DV 122
Query: 584 QKLVNLKCLNLEYMYNLN 601
K+ +L+ + L+ N+N
Sbjct: 123 HKIHSLQKVLLDIQDNIN 140
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 521 LFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEH-LDLSGTAITHL 579
L+L+ N ++ I F L N+S+N+ L +LP+ + S LD+S T I L
Sbjct: 159 LWLNKNGIQEIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217
Query: 580 PIELQKLVNLKCLNLEYMYNLNQFPRL 606
P L NLK L YNL + P L
Sbjct: 218 PS--YGLENLKKLRARSTYNLKKLPTL 242
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 525 DNSLKMIAGDFFQFMPSLRVFNMSN-NHLLWKLPSGISTLVSLEHLDLSGTAITHLPIEL 583
++ L++I D F +P L + N+LL+ P L +L++L +S T I HLP ++
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DV 122
Query: 584 QKLVNLKCLNLEYMYNLN 601
K+ +L+ + L+ N+N
Sbjct: 123 HKIHSLQKVLLDIQDNIN 140
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 496 VRRMSLMKNKIENLSETPTC----PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNH 551
++ +SL N++ SE+ +L L LS N+L + F ++PSLR ++ N+
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 552 LLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNL-------NQFP 604
+ P L +L +L L A T + L N+ + +++ L N P
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLK-RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIP 342
Query: 605 RLVMSAFSKLQVLRILKSNVLFGGHQFLVEE-LMGMKHLMALTITL 649
+ F+ L L+ L + F Q L E + + H LT+ L
Sbjct: 343 STKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNL 388
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 489 EIQNWRNVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFN 546
E+ N++++ + L N+I LS LL+L LS N L+ I F + SLR+ +
Sbjct: 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 547 MSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576
+ N + + L +L HL + +
Sbjct: 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 518 LLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAIT 577
L L+L+ NSL + + + + +LRV ++S+N L LP+ + + L++ +T
Sbjct: 249 LTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 578 HLPIELQKLVNLKCLNLE 595
LP E L NL+ L +E
Sbjct: 307 TLPWEFGNLCNLQFLGVE 324
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 520 SLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHL 579
+L LS+ + I+ + F++ R++ N + L +LP+ I L +L LDLS +T L
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLY--LNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285
Query: 580 PIELQKLVNLKCLNLEYMY 598
P EL C L+Y Y
Sbjct: 286 PAELG-----SCFQLKYFY 299
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 73/229 (31%)
Query: 483 GLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSL 542
G+T IQ N+ + L N+I +L+ + L LS N LK +
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNV----------- 106
Query: 543 RVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQ 602
S I+ L S++ LDL+ T IT + L L NL+ L L+ LNQ
Sbjct: 107 ---------------SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLD----LNQ 146
Query: 603 FPRLV-MSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLIS 661
+ ++ + LQ L I G +Q V +L + +L LT TL++
Sbjct: 147 ITNISPLAGLTNLQYLSI-------GNNQ--VNDLTPLANLSKLT-TLRA---------- 186
Query: 662 QELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMT 710
+D+K DI LA L NL ++ HL+D Q++
Sbjct: 187 ---------------DDNKISDISPLASLPNLIEV------HLKDNQIS 214
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 493 WRNVRRMSLMKNKIENLSETP-----TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNM 547
++NV ++++ + +LS P P L +L +S+N+L+ I D FQ SL+ +
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 548 SNNHLLWKLPSGISTLVSLEHLDLSGTAITHL--PIELQKL 586
S+N L +S + SL H ++S ++ L PI +++L
Sbjct: 179 SSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 216
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 483 GLTEAPEIQNWRNVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMIAGDFF-QFM 539
LT+ + N+ + + L N++E + P L L++S+N +++A + + Q +
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPI 300
Query: 540 PSLRVFNMSNNHLL 553
P+L+V ++S+NHLL
Sbjct: 301 PTLKVLDLSHNHLL 314
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 518 LLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAIT 577
L L L N ++MI F+P+LR ++ NN L ++P+G+ L L+ + L IT
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 50/166 (30%)
Query: 483 GLTEAPEIQNWRNVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMIAGDFFQFMP 540
GLTEA V+ + L N+I +S + C +L +L L+ N + I D F
Sbjct: 49 GLTEA--------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF---- 96
Query: 541 SLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYN 599
S+L SLEHLDLS +++L + L +L LNL
Sbjct: 97 --------------------SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG--- 133
Query: 600 LNQFPRL----VMSAFSKLQVLRILKSNVL-------FGGHQFLVE 634
N + L + S +KLQ+LR+ + F G FL E
Sbjct: 134 -NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 81/210 (38%), Gaps = 56/210 (26%)
Query: 457 VIRDMVLWIACKIEKEKENF--------------LVHAGLGLTEAPEIQNWRNVRRMSLM 502
+ D L A KI K N L G G+T +Q N+ + L
Sbjct: 12 IFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK 71
Query: 503 KNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGIST 562
N+I +L+ + L LS N LK + S I+
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNV--------------------------SAIAG 105
Query: 563 LVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLV-MSAFSKLQVLRILK 621
L S++ LDL+ T IT + L L NL+ L L+ LNQ + ++ + LQ L I
Sbjct: 106 LQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLD----LNQITNISPLAGLTNLQYLSI-- 158
Query: 622 SNVLFGGHQFLVEELMGMKHLMALTITLKS 651
G Q V +L + +L LT TLK+
Sbjct: 159 -----GNAQ--VSDLTPLANLSKLT-TLKA 180
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 516 PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575
P+L L LS N L + F + +L V + NNH++ + + L+ L LS
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 576 ITHLPIEL----QKLVNLKCLNLEYMYNLNQFPRLVMSAFSKL 614
I+ P+EL KL L L+L N+ +L ++ KL
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSS----NKLKKLPLTDLQKL 186
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 520 SLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHL 579
SL LS+N + I+ Q +L+ +++N + S+L SLEHLDLS +++L
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 89
Query: 580 PIE-LQKLVNLKCLNLEYMYNLNQFPRL----VMSAFSKLQVLRILKSNVL-------FG 627
+ L +L LNL N + L + S +KLQ+LR+ + F
Sbjct: 90 SSSWFKPLSSLTFLNLLG----NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 628 GHQFLVE 634
G FL E
Sbjct: 146 GLTFLEE 152
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 493 WRNVRRMSLMKNKIENLSETP-----TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNM 547
++NV ++++ + +LS P P L +L +S+N+L+ I D FQ SL+ +
Sbjct: 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172
Query: 548 SNNHLLWKLPSGISTLVSLEHLDLSGTAITHL--PIELQKL 586
S+N L +S + SL H ++S ++ L PI +++L
Sbjct: 173 SSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 483 GLTEAPEIQNWRNVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMIAGDFF-QFM 539
LT+ + N+ + + L N++E + P L L++S+N +++A + + Q +
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPI 294
Query: 540 PSLRVFNMSNNHLL 553
P+L+V ++S+NHLL
Sbjct: 295 PTLKVLDLSHNHLL 308
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 474 ENFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAG 533
+N L+H L++ I N L + I +LS+ L L +S N ++ +
Sbjct: 9 KNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSK------LRILIISHNRIQYLDI 62
Query: 534 DFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPI--ELQKLVNLKC 591
F+F L ++S+N L+ V+L+HLDLS A LPI E + LK
Sbjct: 63 SVFKFNQELEYLDLSHNKLV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119
Query: 592 LNLEYMY 598
L L +
Sbjct: 120 LGLSTTH 126
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 516 PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPS-GISTLVSLEHLDLSGT 574
P L +L L DN L + F+++ LR + NN + +PS + + SL LDL
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGEL 141
Query: 575 AITHLPIE--LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRI 619
E + LVNL+ LNL M NL P L +A +L+ L +
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLG-MCNLKDIPNL--TALVRLEELEL 185
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 559 GISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFP 604
GI TL ++E+ LS A+ H+P ++ L +K Y L Q P
Sbjct: 42 GIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLP 87
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 559 GISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFP 604
GI TL ++E+ LS A+ H+P ++ L +K Y L Q P
Sbjct: 25 GIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLP 70
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 516 PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPS-GISTLVSLEHLDLSGT 574
P L +L L DN L + F+++ LR + NN + +PS + + SL LDL
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGEL 141
Query: 575 AITHLPIE--LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRI 619
E + LVNL+ LNL M NL P L +A +L+ L +
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLG-MCNLKDIPNL--TALVRLEELEL 185
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 518 LLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAIT 577
L L+L DN+L+ + D F+ + +L + N + L SL+ L L +
Sbjct: 130 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189
Query: 578 HL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRI 619
H+ P + L L L L + NL+ P ++ LQ LR+
Sbjct: 190 HVHPHAFRDLGRLMTLYL-FANNLSALPTEALAPLRALQYLRL 231
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 518 LLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAIT 577
L L+L DN+L+ + D F+ + +L + N + L SL+ L L +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 578 HL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRI 619
H+ P + L L L L + NL+ P ++ LQ LR+
Sbjct: 191 HVHPHAFRDLGRLMTLYL-FANNLSALPTEALAPLRALQYLRL 232
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1
Length = 350
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 270 CGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS 314
GAM +H F+KV L P+ ++ +N+R+++ + P+L+ S
Sbjct: 296 TGAM-SHAFIKVMTLQPQQSYLSLLQNMRKELAGKYSQKPQLSSS 339
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 518 LLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNN---HLLWKLPSGISTLVSLEHLDLSGT 574
L +L + + L+ +A D F F P L N+S N L WK G+ SL+ L LSG
Sbjct: 58 LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL----SLQELVLSGN 113
Query: 575 AI 576
+
Sbjct: 114 PL 115
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 493 WRNVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNN 550
+ ++ +++L +N+I + + HLL L LS N L I F+ + L V ++S N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 551 HLLWKLPSGISTLVSLEHLDLSGTAITHLP 580
H+ L +L+ L L + +P
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVP 387
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 484 LTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLR 543
LT+ PE+ +++ + + +N LSE P P+L L S N ++ + PSL
Sbjct: 269 LTDLPELP--QSLTFLDVSENIFSGLSELP--PNLYYLNASSNEIRSLCD----LPPSLE 320
Query: 544 VFNMSNNHL--LWKLPSGISTLV-SLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNL 600
N+SNN L L LP + L+ S HL + LP NLK L++EY L
Sbjct: 321 ELNVSNNKLIELPALPPRLERLIASFNHL----AEVPELP------QNLKQLHVEYNP-L 369
Query: 601 NQFPRLVMS 609
+FP + S
Sbjct: 370 REFPDIPES 378
>pdb|1Z7K|B Chain B, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
Length = 62
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 667 CTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKH 703
C ++L C D + D C+ C HNL + G+KH
Sbjct: 22 CNKALNPVCGTDGVTYDNECVLCAHNLEQGTSVGKKH 58
>pdb|1YU6|C Chain C, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|D Chain D, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 185
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 667 CTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKH 703
C ++L C D + D C+ C HNL + G+KH
Sbjct: 86 CNKALNPVCGTDGVTYDNECVLCAHNLEQGTSVGKKH 122
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 539 MPSLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSGTAI 576
+ +L+ N+++N + +KLP S L +LEHLDLS I
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 25/188 (13%)
Query: 516 PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575
P L L +N + I F+ + +L + NN + P + LV LE L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 576 ITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRI-------LKSNVLFGG 628
+ LP ++ K + E + N+ ++ S F+ L + + LKS+ + G
Sbjct: 112 LKELPEKMPKTLQ------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 629 HQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLA 688
GMK L + I + I Q L L L N +D L
Sbjct: 166 ------AFQGMKKLSYIRIADTNITT-----IPQGLPPSLTELHLDG-NKITKVDAASLK 213
Query: 689 CLHNLNKL 696
L+NL KL
Sbjct: 214 GLNNLAKL 221
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 25/188 (13%)
Query: 516 PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575
P L L +N + I F+ + +L + NN + P + LV LE L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 576 ITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRI-------LKSNVLFGG 628
+ LP ++ K + E + N+ ++ S F+ L + + LKS+ + G
Sbjct: 112 LKELPEKMPKTLQ------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 629 HQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLA 688
GMK L + I + I Q L L L N +D L
Sbjct: 166 ------AFQGMKKLSYIRIADTNITT-----IPQGLPPSLTELHLDG-NKITKVDAASLK 213
Query: 689 CLHNLNKL 696
L+NL KL
Sbjct: 214 GLNNLAKL 221
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 539 MPSLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSGTAI 576
+ +L+ N+++N + +KLP S L +LEHLDLS I
Sbjct: 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|3HTK|C Chain C, Crystal Structure Of Mms21 And Smc5 Complex
Length = 267
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 450 HVVKMHDVIRDMVLWIACKIEKEKEN 475
VV M D +RD ++ + CKI K KE+
Sbjct: 228 QVVSMRDFVRDPIMELRCKIAKMKES 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,709,394
Number of Sequences: 62578
Number of extensions: 901210
Number of successful extensions: 1921
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1777
Number of HSP's gapped (non-prelim): 171
length of query: 863
length of database: 14,973,337
effective HSP length: 107
effective length of query: 756
effective length of database: 8,277,491
effective search space: 6257783196
effective search space used: 6257783196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)