Query 048126
Match_columns 863
No_of_seqs 551 out of 4140
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3E-101 7E-106 896.8 53.4 833 8-859 22-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.6E-65 1E-69 628.8 51.9 638 126-826 184-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1E-45 2.2E-50 392.8 18.3 281 131-413 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 3.7E-22 8E-27 248.1 17.3 333 492-842 116-463 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.2E-21 4.7E-26 241.3 17.3 329 490-841 160-509 (968)
6 PLN03210 Resistant to P. syrin 99.9 4.8E-21 1E-25 237.9 19.8 310 480-826 597-948 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 1.3E-23 2.8E-28 221.6 -3.2 328 474-825 34-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 9.3E-22 2E-26 207.7 -3.8 294 487-815 96-393 (1255)
9 KOG4194 Membrane glycoprotein 99.8 1.8E-20 3.8E-25 197.3 3.1 314 496-839 127-447 (873)
10 KOG4194 Membrane glycoprotein 99.8 1.1E-20 2.3E-25 198.9 1.2 294 489-815 144-446 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 5.3E-18 1.1E-22 171.3 -0.2 306 486-819 198-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1.8E-18 3.9E-23 174.7 -8.5 324 490-842 156-539 (565)
13 KOG0618 Serine/threonine phosp 99.6 3.4E-17 7.3E-22 182.2 -3.8 87 495-583 46-133 (1081)
14 KOG0617 Ras suppressor protein 99.5 2.4E-16 5.3E-21 141.1 -5.6 164 485-657 24-190 (264)
15 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.5E-18 159.7 14.0 267 461-795 190-456 (788)
16 KOG4658 Apoptotic ATPase [Sign 99.5 2.5E-14 5.3E-19 168.9 7.3 322 476-827 527-866 (889)
17 PRK15387 E3 ubiquitin-protein 99.5 4.3E-13 9.3E-18 155.0 13.8 255 495-819 202-456 (788)
18 KOG0618 Serine/threonine phosp 99.4 6.1E-15 1.3E-19 164.5 -3.7 300 494-833 219-521 (1081)
19 PRK15370 E3 ubiquitin-protein 99.4 2.1E-12 4.6E-17 150.3 11.7 117 495-624 200-316 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 1.2E-12 2.6E-17 152.4 9.1 247 495-794 179-425 (754)
21 PRK04841 transcriptional regul 99.4 7.5E-11 1.6E-15 146.4 25.5 294 125-466 13-332 (903)
22 KOG0617 Ras suppressor protein 99.3 4.3E-14 9.3E-19 126.8 -3.5 146 486-639 48-195 (264)
23 PRK00411 cdc6 cell division co 99.3 1.6E-09 3.5E-14 120.4 27.7 294 126-439 30-359 (394)
24 TIGR03015 pepcterm_ATPase puta 99.3 1.1E-09 2.3E-14 115.1 23.9 181 145-333 41-242 (269)
25 KOG4237 Extracellular matrix p 99.2 1E-12 2.2E-17 133.5 -1.4 253 495-763 68-337 (498)
26 PF01637 Arch_ATPase: Archaeal 99.2 7.9E-11 1.7E-15 121.0 12.0 195 128-328 1-233 (234)
27 cd00116 LRR_RI Leucine-rich re 99.2 3.8E-11 8.2E-16 129.8 6.5 136 514-651 21-176 (319)
28 TIGR02928 orc1/cdc6 family rep 99.1 1.7E-08 3.6E-13 111.2 27.1 296 126-439 15-351 (365)
29 cd00116 LRR_RI Leucine-rich re 99.1 6.4E-11 1.4E-15 128.0 7.0 235 492-758 21-289 (319)
30 KOG4341 F-box protein containi 99.1 7.4E-12 1.6E-16 128.5 -2.1 294 516-827 138-445 (483)
31 KOG4237 Extracellular matrix p 99.1 2E-11 4.3E-16 124.3 0.9 234 489-735 86-357 (498)
32 COG2909 MalT ATP-dependent tra 99.0 1.5E-08 3.2E-13 114.1 19.8 299 122-466 15-338 (894)
33 PF05729 NACHT: NACHT domain 99.0 1.9E-09 4.1E-14 104.1 11.1 142 148-298 1-164 (166)
34 TIGR00635 ruvB Holliday juncti 99.0 1.9E-08 4.2E-13 107.5 19.9 265 126-438 4-289 (305)
35 PRK00080 ruvB Holliday junctio 99.0 3.8E-08 8.3E-13 105.9 20.1 272 126-438 25-310 (328)
36 PF14580 LRR_9: Leucine-rich r 98.9 8.9E-10 1.9E-14 104.6 5.9 101 494-597 19-123 (175)
37 KOG4341 F-box protein containi 98.9 4.8E-11 1E-15 122.6 -3.6 298 495-816 139-460 (483)
38 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 2.9E-14 103.4 5.5 141 502-648 5-148 (175)
39 PRK06893 DNA replication initi 98.8 6.2E-08 1.3E-12 98.2 12.9 152 146-330 38-204 (229)
40 COG3899 Predicted ATPase [Gene 98.8 1.4E-07 2.9E-12 112.8 16.9 266 127-404 1-333 (849)
41 KOG3207 Beta-tubulin folding c 98.7 3.5E-09 7.5E-14 109.8 2.1 208 513-756 118-335 (505)
42 COG2256 MGS1 ATPase related to 98.7 1.5E-07 3.3E-12 97.4 14.0 170 127-325 25-208 (436)
43 KOG0532 Leucine-rich repeat (L 98.7 6.4E-10 1.4E-14 118.6 -4.4 146 497-653 101-247 (722)
44 KOG3207 Beta-tubulin folding c 98.7 4.8E-09 1E-13 108.7 1.0 208 561-815 118-333 (505)
45 PRK13342 recombination factor 98.7 3E-07 6.6E-12 102.0 15.0 177 126-332 12-199 (413)
46 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.5E-07 5.5E-12 94.3 12.6 174 126-332 15-204 (226)
47 PTZ00112 origin recognition co 98.6 2.9E-06 6.4E-11 96.7 21.0 204 126-333 755-986 (1164)
48 PF13173 AAA_14: AAA domain 98.6 1.1E-07 2.4E-12 86.9 7.0 120 147-289 2-127 (128)
49 TIGR02903 spore_lon_C ATP-depe 98.6 2.1E-05 4.5E-10 91.2 26.7 203 126-332 154-398 (615)
50 PRK04195 replication factor C 98.6 4.9E-06 1.1E-10 94.3 21.3 182 126-335 14-208 (482)
51 PRK05564 DNA polymerase III su 98.6 1.7E-06 3.8E-11 92.4 16.6 178 126-329 4-190 (313)
52 KOG0532 Leucine-rich repeat (L 98.5 5.4E-09 1.2E-13 111.7 -3.6 194 493-701 74-270 (722)
53 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.3E-12 74.1 4.0 61 516-576 1-61 (61)
54 PRK12402 replication factor C 98.5 2.3E-06 5E-11 93.2 15.3 194 126-328 15-225 (337)
55 cd00009 AAA The AAA+ (ATPases 98.5 9.8E-07 2.1E-11 83.1 11.0 123 129-268 1-131 (151)
56 KOG2028 ATPase related to the 98.5 1.6E-06 3.5E-11 88.0 12.7 172 127-323 139-330 (554)
57 PRK07003 DNA polymerase III su 98.5 6.3E-06 1.4E-10 93.7 18.7 194 126-330 16-222 (830)
58 KOG2120 SCF ubiquitin ligase, 98.5 2.3E-08 5E-13 98.5 -1.1 81 517-597 186-270 (419)
59 KOG2120 SCF ubiquitin ligase, 98.4 2.9E-08 6.3E-13 97.8 -0.5 84 541-624 186-272 (419)
60 KOG1259 Nischarin, modulator o 98.4 2.7E-08 5.8E-13 98.0 -0.8 128 492-624 282-411 (490)
61 KOG1259 Nischarin, modulator o 98.4 7.5E-08 1.6E-12 94.9 2.1 128 515-651 283-410 (490)
62 PRK14949 DNA polymerase III su 98.4 3.2E-06 6.9E-11 98.0 15.4 182 126-330 16-221 (944)
63 cd01128 rho_factor Transcripti 98.4 4.3E-07 9.3E-12 92.1 7.1 93 146-241 15-115 (249)
64 COG1474 CDC6 Cdc6-related prot 98.4 2E-05 4.3E-10 84.9 20.2 198 126-329 17-238 (366)
65 PLN03150 hypothetical protein; 98.4 6.3E-07 1.4E-11 104.6 9.5 107 517-623 419-526 (623)
66 PRK14961 DNA polymerase III su 98.4 8.6E-06 1.9E-10 88.7 17.7 192 126-329 16-220 (363)
67 PRK08727 hypothetical protein; 98.4 4.3E-06 9.3E-11 85.0 14.2 168 126-326 19-201 (233)
68 KOG1909 Ran GTPase-activating 98.4 1.2E-07 2.7E-12 95.9 2.5 85 493-577 29-133 (382)
69 PRK14960 DNA polymerase III su 98.4 4.9E-06 1.1E-10 93.6 15.3 193 126-329 15-219 (702)
70 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.1E-12 104.1 4.2 121 499-623 98-220 (394)
71 PF13401 AAA_22: AAA domain; P 98.4 7E-07 1.5E-11 82.2 7.0 117 146-266 3-125 (131)
72 PRK00440 rfc replication facto 98.4 8.7E-06 1.9E-10 87.8 16.6 180 126-328 17-202 (319)
73 PRK08084 DNA replication initi 98.3 6E-06 1.3E-10 84.0 13.3 171 126-329 22-209 (235)
74 PF13191 AAA_16: AAA ATPase do 98.3 1.3E-06 2.8E-11 85.9 7.9 45 127-171 1-48 (185)
75 PF05496 RuvB_N: Holliday junc 98.3 7.5E-06 1.6E-10 79.6 12.7 175 126-334 24-226 (233)
76 PRK14963 DNA polymerase III su 98.3 1.3E-05 2.9E-10 90.1 16.6 192 126-327 14-215 (504)
77 COG4886 Leucine-rich repeat (L 98.3 3.6E-07 7.8E-12 101.8 4.2 155 489-652 111-267 (394)
78 PTZ00202 tuzin; Provisional 98.3 7.6E-06 1.6E-10 86.7 13.5 159 125-297 261-434 (550)
79 PLN03025 replication factor C 98.3 7.6E-06 1.6E-10 87.7 13.9 180 126-326 13-197 (319)
80 PRK12323 DNA polymerase III su 98.3 1E-05 2.2E-10 90.8 14.7 196 126-329 16-225 (700)
81 PLN03150 hypothetical protein; 98.3 1.7E-06 3.6E-11 101.1 8.9 110 495-604 419-532 (623)
82 PRK14962 DNA polymerase III su 98.3 1.9E-05 4.1E-10 88.1 16.7 185 126-333 14-223 (472)
83 PRK06645 DNA polymerase III su 98.3 3.3E-05 7.2E-10 86.5 18.3 195 126-328 21-228 (507)
84 KOG1909 Ran GTPase-activating 98.3 8.6E-07 1.9E-11 89.9 4.9 241 512-759 26-310 (382)
85 PRK14957 DNA polymerase III su 98.3 2.2E-05 4.8E-10 88.4 16.5 182 126-330 16-222 (546)
86 TIGR02397 dnaX_nterm DNA polym 98.3 3.2E-05 6.9E-10 84.8 17.6 182 126-330 14-219 (355)
87 PRK07471 DNA polymerase III su 98.2 3.2E-05 7E-10 83.4 17.0 196 126-330 19-239 (365)
88 PRK09376 rho transcription ter 98.2 2.6E-06 5.7E-11 89.8 8.2 101 137-241 158-268 (416)
89 PRK14956 DNA polymerase III su 98.2 1.3E-05 2.9E-10 87.7 13.8 191 126-328 18-221 (484)
90 PRK13341 recombination factor 98.2 1.2E-05 2.7E-10 93.8 13.9 169 126-324 28-212 (725)
91 KOG2982 Uncharacterized conser 98.2 1.1E-06 2.3E-11 87.0 4.3 205 513-754 68-286 (418)
92 TIGR00678 holB DNA polymerase 98.2 3.2E-05 7E-10 76.1 14.9 161 137-325 3-187 (188)
93 PRK14951 DNA polymerase III su 98.2 2.9E-05 6.2E-10 88.7 16.0 196 126-329 16-225 (618)
94 PRK07940 DNA polymerase III su 98.2 3.7E-05 8E-10 83.7 16.1 187 126-330 5-214 (394)
95 PRK05896 DNA polymerase III su 98.2 3E-05 6.4E-10 87.4 15.6 194 126-331 16-223 (605)
96 PRK09087 hypothetical protein; 98.2 2.3E-05 5E-10 78.9 13.4 141 146-328 43-194 (226)
97 PRK08691 DNA polymerase III su 98.2 2.2E-05 4.8E-10 89.4 14.5 193 126-329 16-220 (709)
98 PRK14964 DNA polymerase III su 98.2 4.3E-05 9.3E-10 84.8 16.4 181 126-328 13-216 (491)
99 PRK09112 DNA polymerase III su 98.2 2.7E-05 6E-10 83.5 14.3 197 125-330 22-241 (351)
100 PRK07994 DNA polymerase III su 98.2 2.2E-05 4.7E-10 89.9 14.2 193 126-330 16-221 (647)
101 PRK14955 DNA polymerase III su 98.2 2.8E-05 6.1E-10 85.8 14.4 198 126-328 16-227 (397)
102 PF13855 LRR_8: Leucine rich r 98.1 1.5E-06 3.4E-11 67.5 3.0 57 540-597 1-59 (61)
103 PRK14970 DNA polymerase III su 98.1 6.1E-05 1.3E-09 82.7 16.4 179 126-326 17-206 (367)
104 PRK08903 DnaA regulatory inact 98.1 3.6E-05 7.8E-10 78.3 13.6 171 126-333 18-203 (227)
105 PRK14958 DNA polymerase III su 98.1 3.8E-05 8.1E-10 86.7 14.9 180 126-328 16-219 (509)
106 TIGR01242 26Sp45 26S proteasom 98.1 2.2E-05 4.9E-10 85.8 12.4 170 126-323 122-328 (364)
107 KOG1859 Leucine-rich repeat pr 98.1 1.3E-07 2.9E-12 103.8 -5.0 162 480-651 95-290 (1096)
108 PRK05642 DNA replication initi 98.1 5.3E-05 1.1E-09 77.0 14.0 150 147-329 45-208 (234)
109 PF00308 Bac_DnaA: Bacterial d 98.1 4.5E-05 9.7E-10 76.5 12.5 161 146-328 33-207 (219)
110 PRK14969 DNA polymerase III su 98.0 7.5E-05 1.6E-09 84.9 15.1 181 126-328 16-219 (527)
111 PRK09111 DNA polymerase III su 98.0 0.00011 2.3E-09 84.4 16.3 196 126-330 24-234 (598)
112 COG2255 RuvB Holliday junction 98.0 0.00047 1E-08 68.7 18.3 172 126-334 26-228 (332)
113 TIGR00767 rho transcription te 98.0 1.4E-05 3E-10 85.1 7.9 92 146-241 167-267 (415)
114 PRK14959 DNA polymerase III su 98.0 0.00011 2.4E-09 83.3 15.5 196 126-333 16-225 (624)
115 PRK14954 DNA polymerase III su 98.0 0.0002 4.2E-09 82.3 17.0 199 126-329 16-229 (620)
116 PRK14952 DNA polymerase III su 98.0 0.00023 5.1E-09 81.1 17.1 196 126-333 13-224 (584)
117 COG3903 Predicted ATPase [Gene 97.9 9.9E-06 2.1E-10 85.0 5.3 268 146-438 13-292 (414)
118 PHA02544 44 clamp loader, smal 97.9 0.00016 3.6E-09 77.7 15.0 145 126-295 21-171 (316)
119 TIGR02881 spore_V_K stage V sp 97.9 8.7E-05 1.9E-09 77.1 12.4 153 127-300 7-194 (261)
120 KOG2227 Pre-initiation complex 97.9 0.00075 1.6E-08 71.9 19.0 192 126-322 150-361 (529)
121 TIGR02880 cbbX_cfxQ probable R 97.9 0.00015 3.3E-09 75.8 14.2 132 149-299 60-210 (284)
122 PF05621 TniB: Bacterial TniB 97.9 0.00029 6.3E-09 72.1 15.6 191 135-327 46-259 (302)
123 PRK07764 DNA polymerase III su 97.9 0.00022 4.7E-09 84.7 16.9 190 126-327 15-219 (824)
124 PRK14087 dnaA chromosomal repl 97.9 8.9E-05 1.9E-09 82.6 12.7 168 147-332 141-322 (450)
125 PRK03992 proteasome-activating 97.9 0.00014 3E-09 80.0 13.9 169 126-322 131-336 (389)
126 PRK14950 DNA polymerase III su 97.9 0.00032 7E-09 81.3 17.5 194 126-330 16-222 (585)
127 KOG2982 Uncharacterized conser 97.9 3.6E-06 7.8E-11 83.4 1.1 75 520-597 49-131 (418)
128 KOG0531 Protein phosphatase 1, 97.9 1.2E-06 2.6E-11 97.8 -2.7 120 499-624 77-198 (414)
129 CHL00181 cbbX CbbX; Provisiona 97.9 0.00025 5.4E-09 74.2 14.8 133 149-300 61-212 (287)
130 PRK08451 DNA polymerase III su 97.9 0.00044 9.5E-09 77.7 17.5 194 126-330 14-219 (535)
131 PRK15386 type III secretion pr 97.9 4.1E-05 9E-10 81.9 8.8 64 536-605 48-112 (426)
132 PRK14971 DNA polymerase III su 97.9 0.00034 7.4E-09 80.9 17.0 180 126-328 17-221 (614)
133 PF14516 AAA_35: AAA-like doma 97.9 0.0013 2.9E-08 70.6 20.1 199 126-335 11-245 (331)
134 PRK11331 5-methylcytosine-spec 97.9 0.00013 2.7E-09 79.2 12.2 108 126-241 175-284 (459)
135 PRK07133 DNA polymerase III su 97.9 0.00036 7.8E-09 80.6 16.5 187 126-329 18-219 (725)
136 PRK06305 DNA polymerase III su 97.9 0.00045 9.7E-09 77.2 17.0 181 126-329 17-223 (451)
137 PRK14953 DNA polymerase III su 97.8 0.00057 1.2E-08 76.8 17.4 178 126-330 16-221 (486)
138 KOG0531 Protein phosphatase 1, 97.8 3.1E-06 6.7E-11 94.5 -0.8 213 514-756 70-286 (414)
139 KOG2543 Origin recognition com 97.8 0.00033 7.2E-09 72.5 13.4 163 126-296 6-192 (438)
140 PRK14948 DNA polymerase III su 97.8 0.00076 1.7E-08 78.0 17.8 195 126-330 16-223 (620)
141 TIGR02639 ClpA ATP-dependent C 97.8 0.00016 3.5E-09 86.3 12.8 155 126-297 182-358 (731)
142 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.3E-10 55.2 3.9 39 565-604 2-40 (44)
143 KOG0989 Replication factor C, 97.8 0.00016 3.4E-09 72.7 10.3 181 126-323 36-224 (346)
144 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00033 7.2E-09 84.2 14.8 178 126-321 187-388 (852)
145 PRK14088 dnaA chromosomal repl 97.7 0.00031 6.7E-09 78.3 13.1 157 147-325 130-301 (440)
146 KOG1859 Leucine-rich repeat pr 97.7 1.2E-06 2.6E-11 96.5 -5.8 129 491-624 161-291 (1096)
147 PF12799 LRR_4: Leucine Rich r 97.7 3E-05 6.5E-10 55.1 3.2 40 540-580 1-40 (44)
148 PRK06620 hypothetical protein; 97.7 0.0002 4.3E-09 71.5 10.0 132 148-324 45-184 (214)
149 TIGR00362 DnaA chromosomal rep 97.7 0.00041 8.8E-09 77.2 13.5 158 147-326 136-307 (405)
150 PRK15386 type III secretion pr 97.7 0.00013 2.9E-09 78.1 9.1 144 632-818 44-187 (426)
151 KOG3665 ZYG-1-like serine/thre 97.7 3.3E-05 7.1E-10 90.0 4.6 128 495-625 123-263 (699)
152 PRK12422 chromosomal replicati 97.7 0.00056 1.2E-08 76.1 13.8 152 147-322 141-306 (445)
153 PTZ00361 26 proteosome regulat 97.7 0.00033 7.2E-09 77.0 11.8 169 127-322 184-388 (438)
154 PRK06647 DNA polymerase III su 97.7 0.0018 3.8E-08 74.2 17.9 192 126-329 16-220 (563)
155 PRK00149 dnaA chromosomal repl 97.6 0.00046 1E-08 77.8 13.0 158 147-326 148-319 (450)
156 KOG1947 Leucine rich repeat pr 97.6 1.6E-05 3.5E-10 91.3 1.2 112 514-625 186-308 (482)
157 COG1373 Predicted ATPase (AAA+ 97.6 0.00064 1.4E-08 74.7 13.5 135 131-293 22-163 (398)
158 KOG3665 ZYG-1-like serine/thre 97.6 2.2E-05 4.7E-10 91.5 2.2 136 516-652 122-262 (699)
159 PTZ00454 26S protease regulato 97.6 0.00079 1.7E-08 73.6 14.1 171 126-323 145-351 (398)
160 KOG4579 Leucine-rich repeat (L 97.6 9.6E-06 2.1E-10 71.2 -0.7 109 496-606 29-141 (177)
161 PRK14965 DNA polymerase III su 97.6 0.0011 2.5E-08 76.4 15.6 192 126-329 16-221 (576)
162 PRK05563 DNA polymerase III su 97.6 0.0026 5.6E-08 73.1 17.7 190 126-327 16-218 (559)
163 PF05673 DUF815: Protein of un 97.5 0.0032 7E-08 62.5 15.5 46 126-171 27-76 (249)
164 PRK10865 protein disaggregatio 97.5 0.00076 1.7E-08 81.5 13.3 46 126-171 178-223 (857)
165 PRK05707 DNA polymerase III su 97.5 0.0019 4.2E-08 68.8 14.8 167 147-329 22-203 (328)
166 CHL00095 clpC Clp protease ATP 97.5 0.00044 9.5E-09 83.7 10.8 155 126-296 179-353 (821)
167 PRK14086 dnaA chromosomal repl 97.5 0.0016 3.4E-08 73.8 14.1 156 147-324 314-483 (617)
168 COG3267 ExeA Type II secretory 97.5 0.0048 1E-07 61.0 15.5 183 145-332 49-248 (269)
169 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00081 1.8E-08 81.6 12.5 156 126-298 173-350 (852)
170 PRK11034 clpA ATP-dependent Cl 97.4 0.00081 1.8E-08 79.3 11.8 156 126-297 186-362 (758)
171 smart00382 AAA ATPases associa 97.4 0.00049 1.1E-08 63.9 8.3 89 148-243 3-92 (148)
172 TIGR03689 pup_AAA proteasome A 97.4 0.0011 2.4E-08 74.1 12.1 161 126-299 182-380 (512)
173 TIGR00763 lon ATP-dependent pr 97.4 0.01 2.2E-07 71.5 21.1 46 126-171 320-371 (775)
174 PRK07399 DNA polymerase III su 97.4 0.005 1.1E-07 65.3 16.3 198 126-330 4-222 (314)
175 TIGR01241 FtsH_fam ATP-depende 97.4 0.0038 8.3E-08 71.3 16.6 170 126-322 55-259 (495)
176 KOG1947 Leucine rich repeat pr 97.4 4E-05 8.7E-10 88.0 -0.2 115 562-679 186-308 (482)
177 PRK08116 hypothetical protein; 97.3 0.00031 6.8E-09 72.7 6.2 101 148-266 115-220 (268)
178 KOG1644 U2-associated snRNP A' 97.3 0.00029 6.4E-09 66.5 5.3 101 495-596 43-149 (233)
179 PRK10536 hypothetical protein; 97.3 0.0016 3.5E-08 65.4 10.7 136 126-268 55-214 (262)
180 PRK08118 topology modulation p 97.3 0.00015 3.1E-09 69.5 3.3 36 148-183 2-37 (167)
181 COG0593 DnaA ATPase involved i 97.3 0.0009 2E-08 72.0 9.5 134 146-301 112-261 (408)
182 PF10443 RNA12: RNA12 protein; 97.3 0.017 3.8E-07 62.0 18.5 198 131-339 1-288 (431)
183 TIGR00602 rad24 checkpoint pro 97.3 0.0013 2.8E-08 75.6 10.9 46 126-171 84-134 (637)
184 CHL00176 ftsH cell division pr 97.3 0.0056 1.2E-07 71.1 15.8 169 126-321 183-386 (638)
185 PRK08769 DNA polymerase III su 97.2 0.013 2.7E-07 62.0 16.0 177 132-330 10-209 (319)
186 PRK08058 DNA polymerase III su 97.2 0.0088 1.9E-07 64.2 15.1 159 128-295 7-180 (329)
187 PRK06090 DNA polymerase III su 97.1 0.031 6.7E-07 59.0 18.6 177 133-330 10-202 (319)
188 PF00004 AAA: ATPase family as 97.1 0.00091 2E-08 61.3 6.2 22 150-171 1-22 (132)
189 COG1222 RPT1 ATP-dependent 26S 97.1 0.015 3.3E-07 60.2 15.1 193 129-349 154-392 (406)
190 COG0466 Lon ATP-dependent Lon 97.1 0.0057 1.2E-07 69.0 12.9 158 126-298 323-509 (782)
191 COG5238 RNA1 Ran GTPase-activa 97.1 0.00062 1.4E-08 67.0 4.8 44 686-734 209-252 (388)
192 PRK06871 DNA polymerase III su 97.1 0.022 4.8E-07 60.3 16.9 178 133-327 9-201 (325)
193 KOG0741 AAA+-type ATPase [Post 97.1 0.0081 1.8E-07 64.9 13.4 147 146-319 537-704 (744)
194 PRK12608 transcription termina 97.1 0.0031 6.7E-08 67.0 10.4 105 134-240 119-231 (380)
195 KOG1644 U2-associated snRNP A' 97.1 0.0007 1.5E-08 64.0 4.8 79 517-597 43-123 (233)
196 KOG4579 Leucine-rich repeat (L 97.1 0.0001 2.2E-09 64.9 -0.7 106 515-623 26-134 (177)
197 PF13177 DNA_pol3_delta2: DNA 97.1 0.0061 1.3E-07 58.0 11.4 137 130-285 1-162 (162)
198 PF04665 Pox_A32: Poxvirus A32 97.0 0.0015 3.3E-08 65.3 7.2 36 148-186 14-49 (241)
199 KOG0733 Nuclear AAA ATPase (VC 97.0 0.014 3.1E-07 64.3 14.7 91 127-240 191-293 (802)
200 PRK06835 DNA replication prote 97.0 0.0088 1.9E-07 63.6 13.1 37 147-186 183-219 (329)
201 PF00448 SRP54: SRP54-type pro 97.0 0.0025 5.4E-08 62.6 8.2 90 147-239 1-93 (196)
202 PRK07261 topology modulation p 97.0 0.0029 6.2E-08 60.9 8.1 66 149-240 2-68 (171)
203 COG0542 clpA ATP-binding subun 97.0 0.013 2.9E-07 67.9 14.6 104 126-240 491-604 (786)
204 PRK10865 protein disaggregatio 96.9 0.085 1.8E-06 64.1 22.0 46 126-171 568-622 (857)
205 PRK10787 DNA-binding ATP-depen 96.9 0.014 3.1E-07 69.6 15.2 157 126-297 322-506 (784)
206 PRK08181 transposase; Validate 96.9 0.0014 3E-08 67.5 5.4 78 140-240 101-178 (269)
207 PRK12377 putative replication 96.8 0.0054 1.2E-07 62.3 9.3 75 146-240 100-174 (248)
208 KOG2228 Origin recognition com 96.8 0.022 4.9E-07 58.4 13.4 168 126-298 24-220 (408)
209 PRK00771 signal recognition pa 96.8 0.035 7.6E-07 61.3 15.8 90 146-239 94-185 (437)
210 PRK09361 radB DNA repair and r 96.7 0.0053 1.1E-07 62.3 8.6 46 146-195 22-67 (225)
211 TIGR02639 ClpA ATP-dependent C 96.7 0.0094 2E-07 71.4 11.9 101 126-240 454-564 (731)
212 TIGR02640 gas_vesic_GvpN gas v 96.7 0.029 6.3E-07 58.2 14.1 56 133-196 9-64 (262)
213 KOG0991 Replication factor C, 96.7 0.006 1.3E-07 58.9 7.9 46 126-171 27-72 (333)
214 PRK12727 flagellar biosynthesi 96.7 0.046 9.9E-07 60.9 15.8 89 146-239 349-438 (559)
215 KOG0730 AAA+-type ATPase [Post 96.7 0.068 1.5E-06 60.0 17.0 161 129-312 437-630 (693)
216 PRK07993 DNA polymerase III su 96.7 0.048 1E-06 58.4 15.7 179 133-329 9-204 (334)
217 KOG2123 Uncharacterized conser 96.7 0.0002 4.4E-09 70.6 -2.1 100 515-618 18-123 (388)
218 KOG1514 Origin recognition com 96.7 0.044 9.4E-07 61.8 15.4 196 128-332 398-624 (767)
219 COG2812 DnaX DNA polymerase II 96.7 0.015 3.2E-07 64.8 11.9 187 126-324 16-215 (515)
220 KOG2739 Leucine-rich acidic nu 96.7 0.00097 2.1E-08 65.9 2.4 82 537-620 62-151 (260)
221 PRK06964 DNA polymerase III su 96.7 0.079 1.7E-06 56.6 16.9 92 228-330 131-226 (342)
222 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.3E-08 58.8 3.5 23 149-171 1-23 (121)
223 PRK06526 transposase; Provisio 96.7 0.0018 3.8E-08 66.4 4.3 26 146-171 97-122 (254)
224 PRK04296 thymidine kinase; Pro 96.6 0.0017 3.8E-08 63.6 3.8 113 148-268 3-117 (190)
225 CHL00195 ycf46 Ycf46; Provisio 96.6 0.014 3E-07 65.5 11.4 172 127-323 229-429 (489)
226 PRK08939 primosomal protein Dn 96.6 0.005 1.1E-07 65.0 7.4 115 130-265 135-259 (306)
227 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0026 5.6E-08 67.4 5.1 45 127-171 52-102 (361)
228 TIGR01243 CDC48 AAA family ATP 96.6 0.015 3.2E-07 70.0 12.2 171 127-324 179-382 (733)
229 cd01393 recA_like RecA is a b 96.6 0.022 4.8E-07 57.8 11.6 90 146-239 18-124 (226)
230 cd00983 recA RecA is a bacter 96.6 0.023 4.9E-07 59.9 11.8 86 146-239 54-143 (325)
231 PF02562 PhoH: PhoH-like prote 96.5 0.0019 4E-08 63.2 3.3 128 131-267 5-156 (205)
232 PRK09183 transposase/IS protei 96.5 0.0042 9.1E-08 64.1 6.0 26 146-171 101-126 (259)
233 TIGR02237 recomb_radB DNA repa 96.5 0.014 3.1E-07 58.4 9.7 48 146-197 11-58 (209)
234 TIGR01243 CDC48 AAA family ATP 96.5 0.04 8.7E-07 66.3 15.1 171 126-323 453-657 (733)
235 PF07693 KAP_NTPase: KAP famil 96.5 0.089 1.9E-06 56.8 16.6 40 132-171 2-44 (325)
236 PRK07952 DNA replication prote 96.4 0.021 4.5E-07 58.0 10.4 89 134-241 84-174 (244)
237 COG1223 Predicted ATPase (AAA+ 96.4 0.028 6E-07 55.5 10.6 169 126-322 121-318 (368)
238 cd01394 radB RadB. The archaea 96.4 0.025 5.5E-07 57.0 11.0 43 146-191 18-60 (218)
239 PF08423 Rad51: Rad51; InterP 96.4 0.014 3.1E-07 60.0 9.1 101 137-239 26-143 (256)
240 cd01133 F1-ATPase_beta F1 ATP 96.4 0.0092 2E-07 61.0 7.6 93 146-241 68-175 (274)
241 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.01 2.3E-07 60.6 8.2 57 146-204 18-78 (235)
242 TIGR03346 chaperone_ClpB ATP-d 96.4 0.012 2.6E-07 71.7 9.8 60 126-188 565-633 (852)
243 PRK04132 replication factor C 96.3 0.065 1.4E-06 63.7 15.0 155 154-330 571-732 (846)
244 TIGR01425 SRP54_euk signal rec 96.3 0.14 3.1E-06 56.1 16.5 26 146-171 99-124 (429)
245 PRK05541 adenylylsulfate kinas 96.3 0.0085 1.8E-07 58.1 6.5 36 146-184 6-41 (176)
246 COG5238 RNA1 Ran GTPase-activa 96.3 0.004 8.8E-08 61.5 4.1 125 687-824 181-318 (388)
247 KOG0735 AAA+-type ATPase [Post 96.3 0.0095 2.1E-07 66.7 7.2 74 146-240 430-505 (952)
248 PRK06696 uridine kinase; Valid 96.3 0.0067 1.5E-07 61.3 5.7 42 130-171 2-46 (223)
249 PF07728 AAA_5: AAA domain (dy 96.2 0.0045 9.8E-08 57.4 4.1 42 150-197 2-43 (139)
250 TIGR03345 VI_ClpV1 type VI sec 96.2 0.009 2E-07 72.1 7.6 46 126-171 566-620 (852)
251 COG2884 FtsE Predicted ATPase 96.2 0.025 5.4E-07 53.3 8.6 125 146-274 27-204 (223)
252 KOG0736 Peroxisome assembly fa 96.2 0.05 1.1E-06 61.9 12.5 92 126-240 672-775 (953)
253 TIGR02012 tigrfam_recA protein 96.2 0.013 2.8E-07 61.6 7.7 87 146-240 54-144 (321)
254 COG0470 HolB ATPase involved i 96.2 0.025 5.5E-07 61.0 10.3 121 128-266 3-148 (325)
255 KOG0731 AAA+-type ATPase conta 96.2 0.053 1.2E-06 62.6 12.8 174 126-326 311-521 (774)
256 CHL00095 clpC Clp protease ATP 96.2 0.0081 1.8E-07 72.9 6.8 104 126-240 509-622 (821)
257 TIGR00959 ffh signal recogniti 96.2 0.036 7.7E-07 61.1 11.1 92 146-239 98-192 (428)
258 PRK15455 PrkA family serine pr 96.2 0.0059 1.3E-07 68.0 5.1 46 126-171 76-127 (644)
259 KOG1969 DNA replication checkp 96.2 0.012 2.6E-07 66.4 7.3 73 146-241 325-399 (877)
260 PRK14722 flhF flagellar biosyn 96.2 0.022 4.8E-07 61.3 9.2 89 146-239 136-225 (374)
261 PRK06921 hypothetical protein; 96.1 0.011 2.4E-07 61.1 6.7 39 146-186 116-154 (266)
262 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.034 7.3E-07 56.8 10.2 48 146-198 20-67 (237)
263 PRK10867 signal recognition pa 96.1 0.039 8.4E-07 60.9 11.1 26 146-171 99-124 (433)
264 COG1484 DnaC DNA replication p 96.1 0.027 5.9E-07 57.8 9.3 91 130-240 87-178 (254)
265 PRK10463 hydrogenase nickel in 96.1 0.032 6.9E-07 57.6 9.7 98 136-240 93-195 (290)
266 PF01695 IstB_IS21: IstB-like 96.1 0.022 4.7E-07 55.1 8.2 75 146-241 46-120 (178)
267 TIGR03499 FlhF flagellar biosy 96.1 0.024 5.1E-07 59.4 9.0 88 146-238 193-281 (282)
268 COG0572 Udk Uridine kinase [Nu 96.1 0.015 3.2E-07 56.9 6.9 79 146-230 7-85 (218)
269 COG0541 Ffh Signal recognition 96.1 0.34 7.3E-06 52.2 17.3 58 146-207 99-158 (451)
270 KOG0734 AAA+-type ATPase conta 96.1 0.017 3.7E-07 62.6 7.6 43 129-171 307-361 (752)
271 TIGR02238 recomb_DMC1 meiotic 96.1 0.033 7.2E-07 58.9 9.9 100 138-239 85-201 (313)
272 COG1618 Predicted nucleotide k 96.0 0.0077 1.7E-07 55.0 4.3 35 148-184 6-40 (179)
273 COG2607 Predicted ATPase (AAA+ 96.0 0.023 5.1E-07 55.5 7.7 46 126-171 60-109 (287)
274 cd03115 SRP The signal recogni 96.0 0.026 5.6E-07 54.5 8.3 89 149-240 2-93 (173)
275 KOG0743 AAA+-type ATPase [Post 96.0 0.23 5E-06 53.6 15.7 148 148-334 236-414 (457)
276 PRK08699 DNA polymerase III su 96.0 0.076 1.7E-06 56.6 12.4 25 147-171 21-45 (325)
277 cd01120 RecA-like_NTPases RecA 96.0 0.038 8.3E-07 52.6 9.4 40 149-191 1-40 (165)
278 PRK09354 recA recombinase A; P 96.0 0.021 4.6E-07 60.6 7.9 87 146-240 59-149 (349)
279 COG0542 clpA ATP-binding subun 96.0 0.019 4.2E-07 66.7 8.1 153 126-297 170-346 (786)
280 cd01121 Sms Sms (bacterial rad 96.0 0.039 8.5E-07 59.8 10.0 96 136-240 69-169 (372)
281 PRK11889 flhF flagellar biosyn 95.9 0.064 1.4E-06 57.5 11.2 90 146-240 240-331 (436)
282 COG1102 Cmk Cytidylate kinase 95.9 0.021 4.5E-07 52.3 6.5 45 149-207 2-46 (179)
283 KOG2035 Replication factor C, 95.9 0.28 6E-06 49.2 14.7 209 127-352 14-261 (351)
284 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.02 4.3E-07 53.6 6.6 116 148-268 3-139 (159)
285 COG1875 NYN ribonuclease and A 95.9 0.011 2.5E-07 61.2 5.3 136 130-268 228-389 (436)
286 PRK14723 flhF flagellar biosyn 95.9 0.41 8.8E-06 56.3 18.5 88 147-239 185-273 (767)
287 KOG2739 Leucine-rich acidic nu 95.9 0.0046 1E-07 61.3 2.4 104 493-598 42-154 (260)
288 PRK06547 hypothetical protein; 95.9 0.011 2.4E-07 56.7 5.0 36 136-171 4-39 (172)
289 PRK06067 flagellar accessory p 95.9 0.049 1.1E-06 55.5 10.1 88 146-239 24-130 (234)
290 KOG2004 Mitochondrial ATP-depe 95.8 0.018 3.8E-07 64.8 6.7 64 126-195 411-480 (906)
291 PLN00020 ribulose bisphosphate 95.8 0.012 2.7E-07 61.8 5.2 27 145-171 146-172 (413)
292 PRK11034 clpA ATP-dependent Cl 95.8 0.021 4.6E-07 67.6 7.8 46 126-171 458-512 (758)
293 PRK10733 hflB ATP-dependent me 95.8 0.096 2.1E-06 61.7 13.2 150 128-300 154-338 (644)
294 PF00154 RecA: recA bacterial 95.8 0.19 4.2E-06 52.8 14.0 97 137-241 40-143 (322)
295 PRK04301 radA DNA repair and r 95.8 0.066 1.4E-06 57.3 10.9 58 146-205 101-162 (317)
296 PHA00729 NTP-binding motif con 95.8 0.013 2.8E-07 58.0 4.9 35 137-171 7-41 (226)
297 TIGR02239 recomb_RAD51 DNA rep 95.7 0.05 1.1E-06 57.8 9.7 59 146-206 95-157 (316)
298 KOG2123 Uncharacterized conser 95.7 0.0018 3.9E-08 64.1 -1.2 95 496-593 21-123 (388)
299 KOG0744 AAA+-type ATPase [Post 95.7 0.029 6.3E-07 57.2 7.2 81 147-240 177-261 (423)
300 KOG0733 Nuclear AAA ATPase (VC 95.7 0.13 2.7E-06 57.2 12.2 152 146-322 544-717 (802)
301 cd01131 PilT Pilus retraction 95.6 0.014 3.1E-07 57.6 4.8 107 148-269 2-111 (198)
302 PRK04328 hypothetical protein; 95.6 0.052 1.1E-06 55.8 9.1 41 146-189 22-62 (249)
303 COG1066 Sms Predicted ATP-depe 95.6 0.081 1.8E-06 56.2 10.2 96 135-240 79-179 (456)
304 PF13238 AAA_18: AAA domain; P 95.6 0.01 2.2E-07 54.1 3.3 22 150-171 1-22 (129)
305 PRK14974 cell division protein 95.6 0.1 2.2E-06 55.6 11.1 91 146-240 139-233 (336)
306 TIGR00064 ftsY signal recognit 95.6 0.067 1.5E-06 55.5 9.6 90 146-239 71-164 (272)
307 PF00485 PRK: Phosphoribulokin 95.6 0.066 1.4E-06 52.8 9.2 82 149-233 1-87 (194)
308 TIGR03881 KaiC_arch_4 KaiC dom 95.5 0.098 2.1E-06 53.2 10.6 53 146-204 19-71 (229)
309 KOG0652 26S proteasome regulat 95.5 0.23 5E-06 49.0 12.2 53 119-171 161-229 (424)
310 PRK13531 regulatory ATPase Rav 95.5 0.043 9.4E-07 60.5 8.2 44 126-171 20-63 (498)
311 PF00560 LRR_1: Leucine Rich R 95.5 0.0056 1.2E-07 36.1 0.8 21 565-585 1-21 (22)
312 cd03247 ABCC_cytochrome_bd The 95.5 0.056 1.2E-06 52.5 8.3 127 146-281 27-169 (178)
313 PLN03186 DNA repair protein RA 95.5 0.11 2.3E-06 55.7 10.9 59 146-206 122-184 (342)
314 PLN03187 meiotic recombination 95.5 0.12 2.5E-06 55.3 11.1 60 146-206 125-187 (344)
315 PRK12723 flagellar biosynthesi 95.5 0.11 2.4E-06 56.4 11.2 91 146-240 173-265 (388)
316 PRK07667 uridine kinase; Provi 95.5 0.019 4.1E-07 56.5 4.9 37 135-171 3-41 (193)
317 PF13306 LRR_5: Leucine rich r 95.4 0.053 1.1E-06 49.3 7.6 115 493-614 11-128 (129)
318 PF00006 ATP-synt_ab: ATP synt 95.4 0.077 1.7E-06 52.7 9.0 96 139-240 6-116 (215)
319 PRK08972 fliI flagellum-specif 95.4 0.041 9E-07 60.1 7.7 91 146-241 161-264 (444)
320 PF10236 DAP3: Mitochondrial r 95.4 0.49 1.1E-05 50.2 15.6 49 278-326 258-306 (309)
321 TIGR02236 recomb_radA DNA repa 95.4 0.11 2.3E-06 55.6 10.7 58 146-205 94-155 (310)
322 PRK12726 flagellar biosynthesi 95.3 0.092 2E-06 56.1 9.7 90 146-240 205-296 (407)
323 cd02019 NK Nucleoside/nucleoti 95.3 0.014 3.1E-07 46.3 2.9 23 149-171 1-23 (69)
324 PTZ00301 uridine kinase; Provi 95.3 0.02 4.3E-07 56.8 4.5 25 147-171 3-27 (210)
325 PRK12724 flagellar biosynthesi 95.3 0.055 1.2E-06 58.7 8.1 58 147-206 223-281 (432)
326 cd03238 ABC_UvrA The excision 95.2 0.07 1.5E-06 51.4 7.9 124 146-281 20-161 (176)
327 cd03223 ABCD_peroxisomal_ALDP 95.2 0.1 2.3E-06 49.9 9.1 125 146-281 26-160 (166)
328 KOG3864 Uncharacterized conser 95.2 0.0031 6.8E-08 59.8 -1.4 66 687-759 121-188 (221)
329 KOG0728 26S proteasome regulat 95.2 0.4 8.8E-06 47.1 12.7 146 128-297 148-331 (404)
330 COG4608 AppF ABC-type oligopep 95.2 0.092 2E-06 53.0 8.7 125 146-274 38-177 (268)
331 TIGR00554 panK_bact pantothena 95.2 0.097 2.1E-06 54.5 9.2 27 145-171 60-86 (290)
332 PRK08233 hypothetical protein; 95.2 0.017 3.8E-07 56.3 3.6 25 147-171 3-27 (182)
333 PRK09270 nucleoside triphospha 95.1 0.026 5.6E-07 57.3 4.8 27 145-171 31-57 (229)
334 cd01135 V_A-ATPase_B V/A-type 95.1 0.083 1.8E-06 54.0 8.3 95 146-241 68-178 (276)
335 COG0563 Adk Adenylate kinase a 95.1 0.033 7.2E-07 53.6 5.2 23 149-171 2-24 (178)
336 COG4088 Predicted nucleotide k 95.1 0.013 2.9E-07 55.6 2.4 24 148-171 2-25 (261)
337 PF13481 AAA_25: AAA domain; P 95.1 0.096 2.1E-06 51.6 8.8 43 147-189 32-81 (193)
338 PRK11823 DNA repair protein Ra 95.1 0.084 1.8E-06 59.1 9.2 95 136-239 67-166 (446)
339 COG0464 SpoVK ATPases of the A 95.1 0.29 6.4E-06 56.1 13.8 150 128-300 244-426 (494)
340 TIGR02858 spore_III_AA stage I 95.1 0.11 2.5E-06 53.5 9.3 128 135-270 98-232 (270)
341 KOG2170 ATPase of the AAA+ sup 95.1 0.045 9.8E-07 55.4 6.1 45 128-172 84-135 (344)
342 PRK05480 uridine/cytidine kina 95.1 0.021 4.7E-07 57.1 3.9 27 145-171 4-30 (209)
343 PF13671 AAA_33: AAA domain; P 95.0 0.02 4.4E-07 53.2 3.5 23 149-171 1-23 (143)
344 COG0468 RecA RecA/RadA recombi 95.0 0.091 2E-06 54.1 8.4 89 146-239 59-151 (279)
345 PRK07132 DNA polymerase III su 95.0 0.94 2E-05 47.6 16.1 167 135-328 5-184 (299)
346 PTZ00035 Rad51 protein; Provis 95.0 0.24 5.2E-06 53.1 12.0 68 137-206 106-179 (337)
347 PF06745 KaiC: KaiC; InterPro 95.0 0.035 7.5E-07 56.4 5.4 89 146-239 18-125 (226)
348 PRK06762 hypothetical protein; 95.0 0.022 4.7E-07 54.6 3.5 25 147-171 2-26 (166)
349 TIGR01650 PD_CobS cobaltochela 95.0 1 2.2E-05 47.5 16.0 60 128-195 47-106 (327)
350 PF01583 APS_kinase: Adenylyls 95.0 0.028 6.2E-07 52.3 4.1 35 148-185 3-37 (156)
351 KOG0729 26S proteasome regulat 94.9 0.11 2.5E-06 51.3 8.3 43 129-171 180-235 (435)
352 PF00910 RNA_helicase: RNA hel 94.9 0.018 4E-07 50.4 2.7 22 150-171 1-22 (107)
353 COG1428 Deoxynucleoside kinase 94.9 0.022 4.8E-07 54.9 3.4 25 147-171 4-28 (216)
354 COG1419 FlhF Flagellar GTP-bin 94.9 0.22 4.8E-06 53.3 11.0 89 146-239 202-291 (407)
355 PF06309 Torsin: Torsin; Inte 94.9 0.042 9E-07 48.7 4.7 45 127-171 26-77 (127)
356 PRK03839 putative kinase; Prov 94.9 0.022 4.8E-07 55.4 3.4 23 149-171 2-24 (180)
357 cd03228 ABCC_MRP_Like The MRP 94.9 0.084 1.8E-06 50.8 7.4 126 146-281 27-167 (171)
358 PRK05703 flhF flagellar biosyn 94.8 0.093 2E-06 58.2 8.5 88 147-239 221-309 (424)
359 TIGR01360 aden_kin_iso1 adenyl 94.8 0.024 5.3E-07 55.6 3.6 26 146-171 2-27 (188)
360 TIGR00708 cobA cob(I)alamin ad 94.8 0.099 2.2E-06 49.6 7.4 118 147-267 5-140 (173)
361 cd02025 PanK Pantothenate kina 94.8 0.13 2.7E-06 51.8 8.7 23 149-171 1-23 (220)
362 PRK12597 F0F1 ATP synthase sub 94.8 0.091 2E-06 58.2 8.2 93 146-240 142-248 (461)
363 TIGR00235 udk uridine kinase. 94.8 0.024 5.3E-07 56.5 3.6 26 146-171 5-30 (207)
364 TIGR00416 sms DNA repair prote 94.8 0.15 3.2E-06 57.2 10.0 97 135-240 80-181 (454)
365 cd03214 ABC_Iron-Siderophores_ 94.8 0.09 1.9E-06 51.1 7.4 120 146-270 24-161 (180)
366 PRK12678 transcription termina 94.8 0.052 1.1E-06 60.5 6.2 99 138-240 406-514 (672)
367 cd03216 ABC_Carb_Monos_I This 94.8 0.048 1E-06 52.0 5.4 115 146-270 25-145 (163)
368 PRK14721 flhF flagellar biosyn 94.8 0.18 3.9E-06 55.3 10.4 88 146-238 190-278 (420)
369 cd01124 KaiC KaiC is a circadi 94.8 0.12 2.5E-06 50.6 8.3 44 150-198 2-45 (187)
370 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.086 1.9E-06 53.1 7.2 122 146-269 29-201 (254)
371 TIGR00390 hslU ATP-dependent p 94.7 0.066 1.4E-06 57.9 6.7 46 126-171 12-71 (441)
372 PF12775 AAA_7: P-loop contain 94.7 0.036 7.9E-07 57.5 4.7 88 136-239 23-110 (272)
373 TIGR00150 HI0065_YjeE ATPase, 94.7 0.052 1.1E-06 49.1 5.1 38 134-171 7-46 (133)
374 TIGR03575 selen_PSTK_euk L-ser 94.7 0.098 2.1E-06 55.7 8.0 22 150-171 2-23 (340)
375 KOG3347 Predicted nucleotide k 94.7 0.044 9.6E-07 49.3 4.4 70 147-229 7-76 (176)
376 KOG1532 GTPase XAB1, interacts 94.7 0.17 3.7E-06 50.4 8.9 62 146-208 18-88 (366)
377 PRK13765 ATP-dependent proteas 94.7 0.056 1.2E-06 62.7 6.5 75 126-205 31-105 (637)
378 PRK06995 flhF flagellar biosyn 94.7 0.14 3E-06 57.2 9.2 88 147-239 256-344 (484)
379 PRK00625 shikimate kinase; Pro 94.7 0.026 5.7E-07 54.1 3.2 23 149-171 2-24 (173)
380 cd03246 ABCC_Protease_Secretio 94.6 0.091 2E-06 50.7 7.0 26 146-171 27-52 (173)
381 cd02027 APSK Adenosine 5'-phos 94.6 0.11 2.4E-06 48.6 7.4 23 149-171 1-23 (149)
382 PRK08533 flagellar accessory p 94.6 0.21 4.5E-06 50.6 9.8 53 146-204 23-75 (230)
383 PRK04040 adenylate kinase; Pro 94.6 0.029 6.4E-07 54.7 3.5 24 148-171 3-26 (188)
384 PRK08927 fliI flagellum-specif 94.6 0.11 2.4E-06 57.0 8.0 91 146-241 157-260 (442)
385 PTZ00088 adenylate kinase 1; P 94.6 0.031 6.6E-07 56.3 3.5 23 149-171 8-30 (229)
386 PF07726 AAA_3: ATPase family 94.5 0.024 5.1E-07 50.4 2.3 28 150-180 2-29 (131)
387 PRK10416 signal recognition pa 94.5 0.35 7.7E-06 51.4 11.6 26 146-171 113-138 (318)
388 PF03205 MobB: Molybdopterin g 94.5 0.052 1.1E-06 50.1 4.7 39 148-188 1-39 (140)
389 PRK05922 type III secretion sy 94.5 0.12 2.6E-06 56.7 8.2 91 146-241 156-259 (434)
390 PRK06936 type III secretion sy 94.4 0.12 2.7E-06 56.6 8.0 91 146-241 161-264 (439)
391 TIGR02030 BchI-ChlI magnesium 94.4 0.065 1.4E-06 57.3 5.8 47 125-171 3-49 (337)
392 PF00625 Guanylate_kin: Guanyl 94.4 0.057 1.2E-06 52.7 5.0 36 147-185 2-37 (183)
393 PF03308 ArgK: ArgK protein; 94.4 0.069 1.5E-06 53.5 5.5 58 134-192 14-73 (266)
394 TIGR00764 lon_rel lon-related 94.4 0.11 2.5E-06 60.3 8.1 75 126-205 18-92 (608)
395 PRK08149 ATP synthase SpaL; Va 94.4 0.14 3.1E-06 56.1 8.4 91 146-241 150-253 (428)
396 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.28 6.1E-06 50.7 10.1 41 146-189 35-75 (259)
397 PRK05973 replicative DNA helic 94.3 0.26 5.7E-06 49.6 9.5 49 146-199 63-111 (237)
398 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.031 6.6E-07 54.6 2.9 23 149-171 1-23 (183)
399 KOG1051 Chaperone HSP104 and r 94.3 0.15 3.3E-06 60.4 8.9 102 126-241 562-672 (898)
400 PRK00131 aroK shikimate kinase 94.2 0.043 9.4E-07 53.0 3.7 25 147-171 4-28 (175)
401 COG1936 Predicted nucleotide k 94.2 0.036 7.7E-07 51.6 2.8 20 149-168 2-21 (180)
402 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.2 0.15 3.3E-06 47.3 7.2 103 146-270 25-130 (144)
403 TIGR02902 spore_lonB ATP-depen 94.2 0.077 1.7E-06 60.9 6.2 46 126-171 65-110 (531)
404 PRK05201 hslU ATP-dependent pr 94.2 0.11 2.4E-06 56.3 6.9 46 126-171 15-74 (443)
405 TIGR03305 alt_F1F0_F1_bet alte 94.2 0.12 2.6E-06 56.9 7.3 94 146-241 137-244 (449)
406 PRK05342 clpX ATP-dependent pr 94.2 0.13 2.8E-06 56.7 7.6 46 126-171 71-132 (412)
407 COG0467 RAD55 RecA-superfamily 94.2 0.061 1.3E-06 55.8 4.9 55 145-205 21-75 (260)
408 COG1126 GlnQ ABC-type polar am 94.2 0.31 6.6E-06 47.4 9.0 124 146-273 27-202 (240)
409 cd02024 NRK1 Nicotinamide ribo 94.1 0.035 7.6E-07 53.8 2.8 23 149-171 1-23 (187)
410 PRK06002 fliI flagellum-specif 94.1 0.13 2.8E-06 56.6 7.4 91 146-241 164-266 (450)
411 KOG0739 AAA+-type ATPase [Post 94.1 0.23 5E-06 50.2 8.4 90 127-240 134-236 (439)
412 COG3640 CooC CO dehydrogenase 94.1 0.092 2E-06 51.4 5.5 50 149-207 2-51 (255)
413 TIGR02655 circ_KaiC circadian 94.1 0.27 5.9E-06 55.9 10.4 98 135-238 249-362 (484)
414 PF08433 KTI12: Chromatin asso 94.1 0.1 2.2E-06 54.0 6.3 25 148-172 2-26 (270)
415 cd02023 UMPK Uridine monophosp 94.0 0.036 7.8E-07 54.9 2.8 23 149-171 1-23 (198)
416 TIGR03498 FliI_clade3 flagella 94.0 0.14 3E-06 56.2 7.5 91 146-241 139-242 (418)
417 PRK09280 F0F1 ATP synthase sub 94.0 0.17 3.7E-06 55.8 8.2 94 146-241 143-250 (463)
418 PRK06851 hypothetical protein; 94.0 0.64 1.4E-05 50.1 12.3 55 129-189 200-254 (367)
419 cd01125 repA Hexameric Replica 94.0 0.32 7E-06 49.7 9.9 23 149-171 3-25 (239)
420 cd01129 PulE-GspE PulE/GspE Th 94.0 0.18 3.9E-06 52.2 7.9 104 129-245 62-165 (264)
421 COG0465 HflB ATP-dependent Zn 94.0 0.46 9.9E-06 54.0 11.6 45 127-171 151-207 (596)
422 PRK15453 phosphoribulokinase; 94.0 0.28 6E-06 50.3 8.9 26 146-171 4-29 (290)
423 PRK06217 hypothetical protein; 94.0 0.043 9.4E-07 53.5 3.1 23 149-171 3-25 (183)
424 PRK05688 fliI flagellum-specif 94.0 0.19 4.1E-06 55.4 8.3 91 146-241 167-270 (451)
425 PF05970 PIF1: PIF1-like helic 94.0 0.14 2.9E-06 56.0 7.3 38 134-171 9-46 (364)
426 CHL00081 chlI Mg-protoporyphyr 93.9 0.063 1.4E-06 57.3 4.5 46 126-171 17-62 (350)
427 COG1703 ArgK Putative periplas 93.9 0.092 2E-06 53.4 5.4 60 136-196 38-99 (323)
428 PRK05439 pantothenate kinase; 93.9 0.39 8.6E-06 50.5 10.3 27 145-171 84-110 (311)
429 PF13245 AAA_19: Part of AAA d 93.9 0.14 3.1E-06 41.4 5.5 26 146-171 9-34 (76)
430 PF00158 Sigma54_activat: Sigm 93.9 0.25 5.4E-06 47.2 8.1 44 128-171 1-46 (168)
431 PTZ00494 tuzin-like protein; P 93.9 2.8 6.1E-05 45.4 16.3 162 126-297 371-544 (664)
432 PRK00279 adk adenylate kinase; 93.9 0.21 4.6E-06 50.1 8.1 23 149-171 2-24 (215)
433 cd02020 CMPK Cytidine monophos 93.9 0.043 9.4E-07 51.2 2.9 23 149-171 1-23 (147)
434 cd02021 GntK Gluconate kinase 93.9 0.042 9.2E-07 51.6 2.8 23 149-171 1-23 (150)
435 KOG0735 AAA+-type ATPase [Post 93.9 1.2 2.6E-05 50.8 14.2 89 129-240 670-771 (952)
436 PTZ00185 ATPase alpha subunit; 93.9 0.23 5E-06 54.9 8.6 94 146-240 188-300 (574)
437 PRK13407 bchI magnesium chelat 93.9 0.072 1.6E-06 56.8 4.8 46 126-171 8-53 (334)
438 PRK13947 shikimate kinase; Pro 93.9 0.049 1.1E-06 52.4 3.3 23 149-171 3-25 (171)
439 cd03369 ABCC_NFT1 Domain 2 of 93.9 0.35 7.6E-06 48.2 9.6 26 146-171 33-58 (207)
440 PRK00889 adenylylsulfate kinas 93.9 0.06 1.3E-06 52.1 3.9 26 146-171 3-28 (175)
441 PRK05986 cob(I)alamin adenolsy 93.9 0.19 4.2E-06 48.4 7.2 118 146-267 21-158 (191)
442 PRK13949 shikimate kinase; Pro 93.8 0.053 1.1E-06 52.0 3.4 24 148-171 2-25 (169)
443 TIGR02322 phosphon_PhnN phosph 93.8 0.051 1.1E-06 52.8 3.3 24 148-171 2-25 (179)
444 cd02028 UMPK_like Uridine mono 93.8 0.06 1.3E-06 52.2 3.8 23 149-171 1-23 (179)
445 TIGR01040 V-ATPase_V1_B V-type 93.8 0.2 4.3E-06 55.0 8.0 94 146-240 140-258 (466)
446 COG0396 sufC Cysteine desulfur 93.8 0.28 6E-06 48.1 8.1 63 218-280 151-217 (251)
447 cd00071 GMPK Guanosine monopho 93.8 0.052 1.1E-06 50.0 3.2 23 149-171 1-23 (137)
448 cd00227 CPT Chloramphenicol (C 93.8 0.055 1.2E-06 52.3 3.4 24 148-171 3-26 (175)
449 PRK09519 recA DNA recombinatio 93.7 0.2 4.3E-06 59.0 8.4 95 137-239 47-148 (790)
450 PRK15429 formate hydrogenlyase 93.7 0.14 3E-06 61.2 7.5 46 126-171 376-423 (686)
451 PF03193 DUF258: Protein of un 93.7 0.091 2E-06 49.2 4.5 36 133-171 24-59 (161)
452 TIGR01039 atpD ATP synthase, F 93.7 0.21 4.6E-06 54.9 8.0 94 146-241 142-249 (461)
453 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.2 4.3E-06 47.4 7.0 115 147-272 25-145 (157)
454 PF08298 AAA_PrkA: PrkA AAA do 93.6 0.093 2E-06 55.2 5.0 46 126-171 61-112 (358)
455 TIGR01041 ATP_syn_B_arch ATP s 93.6 0.24 5.2E-06 55.0 8.4 95 146-241 140-250 (458)
456 PRK14530 adenylate kinase; Pro 93.6 0.058 1.3E-06 54.2 3.4 24 148-171 4-27 (215)
457 TIGR00073 hypB hydrogenase acc 93.6 0.07 1.5E-06 53.2 4.0 32 140-171 15-46 (207)
458 cd01136 ATPase_flagellum-secre 93.6 0.33 7.2E-06 51.4 9.1 90 146-240 68-170 (326)
459 COG0003 ArsA Predicted ATPase 93.6 0.1 2.3E-06 55.0 5.3 49 147-198 2-50 (322)
460 PF13086 AAA_11: AAA domain; P 93.6 0.15 3.2E-06 51.9 6.5 65 135-201 7-75 (236)
461 cd03281 ABC_MSH5_euk MutS5 hom 93.6 0.06 1.3E-06 53.8 3.4 24 147-170 29-52 (213)
462 TIGR03263 guanyl_kin guanylate 93.5 0.056 1.2E-06 52.5 3.1 24 148-171 2-25 (180)
463 cd00544 CobU Adenosylcobinamid 93.5 0.38 8.3E-06 45.9 8.6 80 150-239 2-83 (169)
464 PRK10751 molybdopterin-guanine 93.5 0.073 1.6E-06 50.7 3.6 26 146-171 5-30 (173)
465 PRK12339 2-phosphoglycerate ki 93.5 0.07 1.5E-06 52.4 3.6 25 147-171 3-27 (197)
466 COG3598 RepA RecA-family ATPas 93.4 0.27 5.9E-06 50.4 7.6 59 149-207 91-157 (402)
467 KOG0737 AAA+-type ATPase [Post 93.4 0.89 1.9E-05 47.9 11.5 49 127-178 93-155 (386)
468 cd00464 SK Shikimate kinase (S 93.4 0.065 1.4E-06 50.5 3.2 22 150-171 2-23 (154)
469 PF08477 Miro: Miro-like prote 93.4 0.068 1.5E-06 47.7 3.2 22 150-171 2-23 (119)
470 KOG3864 Uncharacterized conser 93.3 0.03 6.5E-07 53.4 0.7 37 691-735 151-187 (221)
471 cd01132 F1_ATPase_alpha F1 ATP 93.3 0.25 5.3E-06 50.6 7.4 97 146-247 68-180 (274)
472 cd01122 GP4d_helicase GP4d_hel 93.3 0.56 1.2E-05 49.0 10.4 53 146-202 29-81 (271)
473 PF13504 LRR_7: Leucine rich r 93.3 0.052 1.1E-06 29.6 1.3 16 565-580 2-17 (17)
474 PRK05057 aroK shikimate kinase 93.3 0.078 1.7E-06 51.0 3.6 25 147-171 4-28 (172)
475 PRK13975 thymidylate kinase; P 93.3 0.072 1.6E-06 52.6 3.4 24 148-171 3-26 (196)
476 PF03215 Rad17: Rad17 cell cyc 93.3 0.13 2.8E-06 58.4 5.7 53 128-185 21-78 (519)
477 PF03266 NTPase_1: NTPase; In 93.2 0.093 2E-06 50.1 3.9 22 150-171 2-23 (168)
478 cd01878 HflX HflX subfamily. 93.2 0.24 5.2E-06 49.2 7.1 27 145-171 39-65 (204)
479 PF13306 LRR_5: Leucine rich r 93.2 0.18 3.9E-06 45.7 5.7 104 512-621 8-112 (129)
480 cd02029 PRK_like Phosphoribulo 93.2 0.34 7.5E-06 49.2 8.0 23 149-171 1-23 (277)
481 PRK00300 gmk guanylate kinase; 93.2 0.073 1.6E-06 53.0 3.3 26 146-171 4-29 (205)
482 TIGR01069 mutS2 MutS2 family p 93.2 0.061 1.3E-06 64.2 3.1 190 146-352 321-523 (771)
483 PF10923 DUF2791: P-loop Domai 93.2 0.62 1.3E-05 50.9 10.5 77 128-207 27-113 (416)
484 COG2019 AdkA Archaeal adenylat 93.1 0.083 1.8E-06 48.7 3.2 25 147-171 4-28 (189)
485 PRK05917 DNA polymerase III su 93.1 2 4.4E-05 44.6 13.8 38 134-171 5-43 (290)
486 COG0488 Uup ATPase components 93.1 1 2.2E-05 51.3 12.6 240 31-283 236-511 (530)
487 PRK13948 shikimate kinase; Pro 93.1 0.099 2.1E-06 50.6 3.9 26 146-171 9-34 (182)
488 PRK14527 adenylate kinase; Pro 93.1 0.09 1.9E-06 51.7 3.8 26 146-171 5-30 (191)
489 COG1124 DppF ABC-type dipeptid 93.1 0.12 2.5E-06 51.2 4.4 26 146-171 32-57 (252)
490 PF02374 ArsA_ATPase: Anion-tr 93.1 0.11 2.5E-06 54.8 4.7 45 148-195 2-46 (305)
491 PRK05800 cobU adenosylcobinami 93.0 0.36 7.8E-06 46.2 7.7 84 148-239 2-86 (170)
492 TIGR01313 therm_gnt_kin carboh 93.0 0.065 1.4E-06 51.1 2.6 22 150-171 1-22 (163)
493 TIGR00176 mobB molybdopterin-g 93.0 0.11 2.5E-06 48.8 4.2 33 149-183 1-33 (155)
494 PRK03846 adenylylsulfate kinas 93.0 0.094 2E-06 51.9 3.7 27 145-171 22-48 (198)
495 COG0529 CysC Adenylylsulfate k 92.9 0.16 3.4E-06 47.5 4.7 29 143-171 19-47 (197)
496 PRK13946 shikimate kinase; Pro 92.9 0.095 2E-06 51.1 3.6 25 147-171 10-34 (184)
497 cd01134 V_A-ATPase_A V/A-type 92.9 0.88 1.9E-05 48.2 10.8 58 138-200 147-206 (369)
498 PRK07594 type III secretion sy 92.9 0.28 6.1E-06 53.9 7.5 92 145-241 153-257 (433)
499 PF13521 AAA_28: AAA domain; P 92.9 0.081 1.8E-06 50.5 3.0 21 150-170 2-22 (163)
500 PRK10078 ribose 1,5-bisphospho 92.9 0.083 1.8E-06 51.7 3.1 24 148-171 3-26 (186)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-101 Score=896.82 Aligned_cols=833 Identities=42% Similarity=0.678 Sum_probs=699.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhc----------------C
Q 048126 8 NLPALQAQLQKLIESENDVMARVANAENQQMRQLNTVQGWLSRVEAVETEVGELMRDSSQEVD----------------K 71 (863)
Q Consensus 8 ~~~~l~~~l~~l~~~l~~i~~~~~~ae~~~~~~~~~v~~wl~~l~~~~y~~ed~~d~~~~~~~----------------~ 71 (863)
.+...++.+..|+..+..++.++++|+.++.. ...+..|.+.+++++|+++|+++.+..+.. +
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 34445567777888888888888888887654 367889999999999999999998875432 1
Q ss_pred ccCCCccCCCchhhhhhHHHHHHHHHHHHHHHhcCCcccccc-cCCCCccccCCCCCc--cchhHHHHHHHHHhcCCCcc
Q 048126 72 LCPGGCCSKNCKSSFKFGKRVAKTLQLVNNLMGEGAFDAVAE-KVRPPAVDQRPCEPT--VGLESMFDKVWRCLGEEQVG 148 (863)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--vGr~~~~~~l~~~L~~~~~~ 148 (863)
.|..++|.......|.+++++.+..++++.+..++.|..++. ..+......+|.... ||.+..++++++.|.+++..
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~ 180 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVG 180 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCC
Confidence 234456666777888899999999999999988777766654 223233333343333 99999999999999988889
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhcc
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSK 228 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 228 (863)
+++|+||||+||||||++++|+...++++||.++||+||++++...++++|++.++.....+.....++.+..|.+.|++
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~ 260 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEG 260 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999438999999999999999999999999999999876665666668899999999999
Q ss_pred CcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCC
Q 048126 229 KKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPD 307 (863)
Q Consensus 229 kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~ 307 (863)
|||+|||||||+..+|+.++.++|...+||||++|||++.||.. |++...++++.|+.+|||+||++.++......++.
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 99999999999999999999999999999999999999999998 88888999999999999999999999886667777
Q ss_pred hHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhc-CCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHh
Q 048126 308 IPELARSVAKEYAGLPLALITIGRAMTCKKTTQEWHHAIQILRRS-SSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYC 386 (863)
Q Consensus 308 ~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~ 386 (863)
++++|++++++|+|+|||++++|+.|+.+.+..+|+++++.+.+. ..+.+++.+.+++++++||++||+ ++|.||+||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLyc 419 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYC 419 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhh
Confidence 999999999999999999999999999999999999999999888 666677778999999999999995 999999999
Q ss_pred ccCCCCccccHHhHHHHHHhcCCCCCcc-cchhhhhHHHHHHHHHHhccccccccccccccccceEEeehhHHHHHHHHH
Q 048126 387 GLFPEDYRIRKSELIDCWIGEGFLDQYD-RSGAYNEGYYIIGILLHACLLEEEEGDIAEEKSGEHVVKMHDVIRDMVLWI 465 (863)
Q Consensus 387 ~~fp~~~~i~~~~li~~w~a~g~i~~~~-~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdli~d~a~~~ 465 (863)
|+||+||.|+++.|+.+||||||+++.+ ...+++.|+.|+.+|++++|++.... . ++..+|+|||+|||+|.++
T Consensus 420 alFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~----~-~~~~~~kmHDvvRe~al~i 494 (889)
T KOG4658|consen 420 ALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD----E-GRKETVKMHDVVREMALWI 494 (889)
T ss_pred ccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc----c-cceeEEEeeHHHHHHHHHH
Confidence 9999999999999999999999999865 77889999999999999999998762 1 3468999999999999999
Q ss_pred HhhhccccccEEEEcCCCcccCcccccccceEEEEeccccccccccCCCCCccceEEccCCc--cccccchhhhcCCCcc
Q 048126 466 ACKIEKEKENFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNS--LKMIAGDFFQFMPSLR 543 (863)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~l~~L~ 543 (863)
|++.+++++++++..+.+....+....+...|++++++|.+..++....++.|++|.+.+|. +..++..||..|+.|+
T Consensus 495 as~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~Lr 574 (889)
T KOG4658|consen 495 ASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLR 574 (889)
T ss_pred hccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceE
Confidence 99888888888888777777788888899999999999999998888999999999999995 7888999999999999
Q ss_pred EEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccc
Q 048126 544 VFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSN 623 (863)
Q Consensus 544 ~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~ 623 (863)
+|||++|...+++|++|++|.|||||+++++.++.+|.++++|.+|.+|++..+..+..+|. +...|++|++|.+....
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 99999998889999999999999999999999999999999999999999999877777755 47779999999998776
Q ss_pred cccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcc
Q 048126 624 VLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKH 703 (863)
Q Consensus 624 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 703 (863)
...+ .....++.+|++|+.+.+...+...+..+.....+.+..+.+.+.++.. .....++..+.+|+.|.|.+|..
T Consensus 654 ~~~~--~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 654 LSND--KLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred cccc--hhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc--ceeecccccccCcceEEEEcCCC
Confidence 3322 5678889999999999987666544455555555555666666544221 22235677889999999999987
Q ss_pred cccceecccccccccccc-ccCcccEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCc
Q 048126 704 LEDFQMTVQRSSVNQLAR-GFHSLHTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSV 782 (863)
Q Consensus 704 ~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 782 (863)
.+.. ..+... .... .|++|.++.+.+|.....+.|....|+|+.|.+..|..+++++......... ......
T Consensus 730 ~e~~-~~~~~~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l---~~~i~~ 802 (889)
T KOG4658|consen 730 SEIV-IEWEES---LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL---KELILP 802 (889)
T ss_pred chhh-cccccc---cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc---ccEEec
Confidence 6532 223211 1111 3779999999999999999999889999999999999999886643221111 112456
Q ss_pred CCcccee-ccCCCccccccccCCCCCCCcceEeecCCCCCCCCCCCCCC--CCC-CceEEEccccccccceecCCccccc
Q 048126 783 FAKLQFL-SLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKLPLDSNS--AKG-CKVVIKGEENWWKKATVGGSRHSRC 858 (863)
Q Consensus 783 ~p~L~~L-~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~--~~L-~~l~i~~~~~~~~~l~w~~~~~~~~ 858 (863)
|+++..+ .+.+.+.+..+......++.|+.+.+..||++..+|..... ... ..+....+.+|.+.++|.++.++..
T Consensus 803 f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 882 (889)
T KOG4658|consen 803 FNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLR 882 (889)
T ss_pred ccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhh
Confidence 7888888 68888888888888888899999999999999999987654 222 2333335667899999999988765
Q ss_pred c
Q 048126 859 F 859 (863)
Q Consensus 859 ~ 859 (863)
+
T Consensus 883 ~ 883 (889)
T KOG4658|consen 883 F 883 (889)
T ss_pred c
Confidence 4
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.6e-65 Score=628.77 Aligned_cols=638 Identities=20% Similarity=0.281 Sum_probs=429.2
Q ss_pred CCccchhHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEe---CCc-----------
Q 048126 126 EPTVGLESMFDKVWRCLG--EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVV---SKD----------- 189 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~---s~~----------- 189 (863)
+.+|||+..++++..+|. .+++++|+||||||+||||||+++|++. ..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 568999999999999885 3578999999999999999999999987 678998888742 111
Q ss_pred cC-HHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchh
Q 048126 190 LQ-LEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLE 268 (863)
Q Consensus 190 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~ 268 (863)
++ ...++++++.++..... .... ....+++.++++|+||||||||+...|+.+.....+.++||+||||||+..
T Consensus 261 ~~~~~~l~~~~l~~il~~~~----~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD----IKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC----cccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 11 12344555544422110 0111 124677889999999999999999899988776666788999999999999
Q ss_pred hhhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHH
Q 048126 269 ICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKKTTQEWHHAIQI 348 (863)
Q Consensus 269 v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~ 348 (863)
++..++..++|+++.|++++||+||++.||... ..+.++.+++++|+++|+|+|||++++|+.|++ ++..+|+.++++
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~ 413 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPR 413 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 998887888999999999999999999999765 344568899999999999999999999999997 578999999999
Q ss_pred HHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhccCCCCccccHHhHHHHHHhcCCCCCcccchhhhhHHHHHHH
Q 048126 349 LRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYIIGI 428 (863)
Q Consensus 349 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~ 428 (863)
++... ...+..+|++||++|+++..|.||+++|+|+.+..++ .+..|++.+.... +..++.
T Consensus 414 L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~ 474 (1153)
T PLN03210 414 LRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKN 474 (1153)
T ss_pred HHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHH
Confidence 87643 2479999999999998745899999999999887554 4677888765542 123889
Q ss_pred HHHhccccccccccccccccceEEeehhHHHHHHHHHHhhhccc--cccEEEEcC---------CCccc-----------
Q 048126 429 LLHACLLEEEEGDIAEEKSGEHVVKMHDVIRDMVLWIACKIEKE--KENFLVHAG---------LGLTE----------- 486 (863)
Q Consensus 429 L~~~sll~~~~~~~~~~~~~~~~~~mHdli~d~a~~~~~~~~~~--~~~~~~~~~---------~~~~~----------- 486 (863)
|+++||++.. ...+.|||++|+||+++++++... +..++.... .+...
T Consensus 475 L~~ksLi~~~----------~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~ 544 (1153)
T PLN03210 475 LVDKSLIHVR----------EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI 544 (1153)
T ss_pred HHhcCCEEEc----------CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc
Confidence 9999999875 346999999999999998764211 112222110 00000
Q ss_pred ------Ccccccccc-------------------------------eEEEEeccccccccccCCCCCccceEEccCCccc
Q 048126 487 ------APEIQNWRN-------------------------------VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLK 529 (863)
Q Consensus 487 ------~~~~~~~~~-------------------------------lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~ 529 (863)
...+..+.+ +|.|.+.++.+..+|....+.+|+.|++.+|.+.
T Consensus 545 ~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 545 DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE 624 (1153)
T ss_pred ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc
Confidence 001222333 4555555555555555445667777777777777
Q ss_pred cccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC-CccccchhhhcCCCCCEEecCCccccCCCcHHHh
Q 048126 530 MIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT-AITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVM 608 (863)
Q Consensus 530 ~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~ 608 (863)
.++.. +..+++|++|+|+++..+..+| .++.+++|++|+|++| .+..+|..++++++|+.|++++|..+..+|.. +
T Consensus 625 ~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i 701 (1153)
T PLN03210 625 KLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I 701 (1153)
T ss_pred ccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C
Confidence 66655 5677778888887776666666 3677777888888776 56677777778888888888877777777764 2
Q ss_pred hcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCc------c
Q 048126 609 SAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKS------L 682 (863)
Q Consensus 609 ~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~------~ 682 (863)
++++|+.|++.+|..... .+. ..++|+.|++..+....++... . .++|+.|.+.++..... .
T Consensus 702 -~l~sL~~L~Lsgc~~L~~----~p~---~~~nL~~L~L~~n~i~~lP~~~---~-l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKS----FPD---ISTNISWLDLDETAIEEFPSNL---R-LENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred -CCCCCCEEeCCCCCCccc----ccc---ccCCcCeeecCCCccccccccc---c-ccccccccccccchhhcccccccc
Confidence 677777877777654321 111 1345666666655543333211 1 13455555544221100 0
Q ss_pred cccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCchhhccCCCcEEEEeccccchh
Q 048126 683 DIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQ 762 (863)
Q Consensus 683 ~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~ 762 (863)
.......+++|+.|++++|..+..++... ..+++|+.|+|++|..++.+|....+++|+.|++++|..+..
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si---------~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSI---------QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhh---------hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 00001123567777777666555443322 236677777777777676666555667777777777766554
Q ss_pred hccccc-cccc------cCCCCCCCCcCCccceeccCCCccccccccCCCCCCCcceEeecCCCCCCCCCC
Q 048126 763 IIKAEK-LSQL------HHHPERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKLPL 826 (863)
Q Consensus 763 i~~~~~-~~~~------~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 826 (863)
+..... ...+ ....+..+..+++|+.|+|++|++|+.++.....+++|+.|.+++|++|+.++.
T Consensus 841 ~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 841 FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 321000 0000 000022344566666666666666666666555666666666666666666554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-45 Score=392.85 Aligned_cols=281 Identities=36% Similarity=0.637 Sum_probs=233.3
Q ss_pred hhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCc
Q 048126 131 LESMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDE 208 (863)
Q Consensus 131 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 208 (863)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++. .++.+|+.++||.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999995 358999999999999999999999999999988754
Q ss_pred cc-cCCChhHHHHHHHHHhccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhhhcccc-cceEeecCCCh
Q 048126 209 SW-KNGSLEDKASDILRILSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEICGAMKA-HEFLKVECLGP 286 (863)
Q Consensus 209 ~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~-~~~~~l~~L~~ 286 (863)
.. ...+..+....+.+.++++++||||||||+...|+.+...++....|++||||||+..++..++. ...+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 45677789999999999999999999999999999998888877789999999999999877665 67899999999
Q ss_pred HHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCCCCcchhhhh
Q 048126 287 EDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKKTTQEWHHAIQILRRSSSEFPGMGKEVYPL 366 (863)
Q Consensus 287 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 366 (863)
+||++||.+.++......++.+.+.+++|+++|+|+|||++++|++|+.+.+..+|+.+++.+.....+..+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998865423446677889999999999999999999999766688999999999888765544455689999
Q ss_pred hhhhcCCCCchhhHHHHhHhccCCCCccccHHhHHHHHHhcCCCCCc
Q 048126 367 LKFSYDSLPDDTIRSCFLYCGLFPEDYRIRKSELIDCWIGEGFLDQY 413 (863)
Q Consensus 367 l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 413 (863)
+.+||+.||+ ++|.||+|||+||+++.|+++.|+++|+++|||.+.
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 899999999999999999999999999999999864
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=3.7e-22 Score=248.15 Aligned_cols=333 Identities=17% Similarity=0.124 Sum_probs=226.4
Q ss_pred cccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEc
Q 048126 492 NWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (863)
Q Consensus 492 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (863)
.+++|++|++++|.+.+......+++|++|++++|.+....+..++++++|++|+|++|.+.+.+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 56788888888887765444456788888888888877555555888889999999888777788888888999999999
Q ss_pred cCCCcc-ccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEc
Q 048126 572 SGTAIT-HLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLK 650 (863)
Q Consensus 572 ~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 650 (863)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.... ..+..++++++|+.|+++.+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc----ccChhHhCCCCCCEEECcCC
Confidence 888776 67888888899999999888555567775 7888899999988887653 35567788888888888766
Q ss_pred ChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEE
Q 048126 651 SWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVK 730 (863)
Q Consensus 651 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 730 (863)
..... ++......++|+.|+++++.-....+ ..+..+++|+.|++++|.....+ +..+ ..+++|+.|+
T Consensus 271 ~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~-~~~~--------~~l~~L~~L~ 338 (968)
T PLN00113 271 KLSGP--IPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKI-PVAL--------TSLPRLQVLQ 338 (968)
T ss_pred eeecc--CchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcC-ChhH--------hcCCCCCEEE
Confidence 54321 11111223578888887765332222 34566788888888887654432 2222 3478888888
Q ss_pred EeccCCCCCCc-hhhccCCCcEEEEeccccchhhccccccc-----c-------ccCCCCCCCCcCCccceeccCCCccc
Q 048126 731 VGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLS-----Q-------LHHHPERKKSVFAKLQFLSLENLRNL 797 (863)
Q Consensus 731 L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~-----~-------~~~~~~~~~~~~p~L~~L~l~~~~~L 797 (863)
|++|.....+| .++.+++|+.|+++++.....+ ...... . .....+..+..+++|+.|.+++|.-.
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~-p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI-PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC-ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 88885444454 5677888888888875432211 110000 0 00001223456788888888887654
Q ss_pred cccccCCCCCCCcceEeecCCCCCCCCCCCCCC-CCCCceEEEccc
Q 048126 798 CCINWEALAFPNLKEIRVEGCPKLFKLPLDSNS-AKGCKVVIKGEE 842 (863)
Q Consensus 798 ~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~-~~L~~l~i~~~~ 842 (863)
..++.....+|+|+.|++++|.--..+|..... ++|+.+.+.+|.
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 455555566888888888876433334443333 888888888764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.2e-21 Score=241.29 Aligned_cols=329 Identities=19% Similarity=0.139 Sum_probs=158.9
Q ss_pred cccccceEEEEeccccccc-cc-cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCC
Q 048126 490 IQNWRNVRRMSLMKNKIEN-LS-ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (863)
Q Consensus 490 ~~~~~~lr~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (863)
+..+++++.|++++|.+.. +| .+.++++|++|++++|.+....+..++++++|++|+|++|.+.+.+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 3444556666665555432 22 234555566666665555443333455556666666665554455555556666666
Q ss_pred eEEccCCCcc-ccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEE
Q 048126 568 HLDLSGTAIT-HLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALT 646 (863)
Q Consensus 568 ~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~ 646 (863)
+|++++|.+. .+|..++++++|++|++++|.....+|.. +.++++|++|++.+|.... ..+..+.++++|+.|+
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSG----EIPELVIQLQNLEILH 314 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeecc----CCChhHcCCCCCcEEE
Confidence 6666655554 45555566666666666555333344443 4555566666655554432 1333445555555555
Q ss_pred EEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceecccccc-----------
Q 048126 647 ITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSS----------- 715 (863)
Q Consensus 647 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~----------- 715 (863)
+..+..... ........++|+.|.++++.-....+ ..+..+++|+.|++++|.....+ +.+....
T Consensus 315 l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~-p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 315 LFSNNFTGK--IPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEI-PEGLCSSGNLFKLILFSN 390 (968)
T ss_pred CCCCccCCc--CChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeC-ChhHhCcCCCCEEECcCC
Confidence 554433211 01111112355555555543222211 23444555666666554332211 1111100
Q ss_pred -----ccccccccCcccEEEEeccCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCcccee
Q 048126 716 -----VNQLARGFHSLHTVKVGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFL 789 (863)
Q Consensus 716 -----~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L 789 (863)
.......+++|+.|++++|.....+| .+..+++|+.|+++++. +...+ +.....+|+|+.|
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~------------~~~~~~l~~L~~L 457 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRI------------NSRKWDMPSLQML 457 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCcc------------ChhhccCCCCcEE
Confidence 00000124445555554443222222 23444555555555432 21110 1233456777777
Q ss_pred ccCCCccccccccCCCCCCCcceEeecCCCCCCCCCCCCCC-CCCCceEEEcc
Q 048126 790 SLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKLPLDSNS-AKGCKVVIKGE 841 (863)
Q Consensus 790 ~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~-~~L~~l~i~~~ 841 (863)
++++|.-...++.. ...++|+.|++++|.--..+|..+.. ++|+.++++++
T Consensus 458 ~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 458 SLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred ECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 77776554444432 23467777777776444455654444 67777777655
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=4.8e-21 Score=237.92 Aligned_cols=310 Identities=22% Similarity=0.320 Sum_probs=217.5
Q ss_pred cCCCcccCcccccccceEEEEecccccccccc-CCCCCccceEEccCC-ccccccchhhhcCCCccEEEccCCCccccCC
Q 048126 480 AGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDN-SLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP 557 (863)
Q Consensus 480 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 557 (863)
.+......|......+++.|++.++.+..++. ...+++|+.|++++| .+..+|. ++.+++|++|+|++|.....+|
T Consensus 597 ~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 597 DKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred cCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc
Confidence 33444455555566799999999999887754 478999999999987 4666764 7889999999999998888999
Q ss_pred ccccccCCCCeEEccCC-CccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHH
Q 048126 558 SGISTLVSLEHLDLSGT-AITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEEL 636 (863)
Q Consensus 558 ~~i~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l 636 (863)
.+++++++|++|++++| .++.+|..+ ++++|++|++++|..+..+|.. .++|+.|++.++.+.. .+..
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-----lP~~- 743 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-----FPSN- 743 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-----cccc-
Confidence 99999999999999998 788999876 8999999999999888777752 4688999998876532 1111
Q ss_pred cCCccCceEEEEEcChHHHHH----Hh-hhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceecc
Q 048126 637 MGMKHLMALTITLKSWEALQE----LL-ISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTV 711 (863)
Q Consensus 637 ~~L~~L~~L~l~~~~~~~~~~----l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~ 711 (863)
..+++|+.|.+.......+.. +. .....+++|+.|.++++.....++ ..+..+++|+.|+|++|..++.++...
T Consensus 744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 245666666665322111100 00 001123467777777765544443 345667777777777776666443221
Q ss_pred ccccccccccccCcccEEEEeccCCC--------------------CCCc-hhhccCCCcEEEEeccccchhhccccccc
Q 048126 712 QRSSVNQLARGFHSLHTVKVGFCFKL--------------------KDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLS 770 (863)
Q Consensus 712 ~~~~~~~~~~~l~~L~~L~L~~c~~l--------------------~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~ 770 (863)
.+++|++|+|++|..+ +.+| +++.+++|+.|++.+|+.++.+
T Consensus 823 ----------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l------- 885 (1153)
T PLN03210 823 ----------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV------- 885 (1153)
T ss_pred ----------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc-------
Confidence 1445555555554443 3444 4567889999999999988876
Q ss_pred cccCCCCCCCCcCCccceeccCCCccccccccCC-------------CCCCCcceEeecCCCCCCCCCC
Q 048126 771 QLHHHPERKKSVFAKLQFLSLENLRNLCCINWEA-------------LAFPNLKEIRVEGCPKLFKLPL 826 (863)
Q Consensus 771 ~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-------------~~~p~L~~L~i~~C~~L~~lp~ 826 (863)
+.....+++|+.|.+++|++|+.++... ..+|+...+.+.+|.+|..-+.
T Consensus 886 ------~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~ 948 (1153)
T PLN03210 886 ------SLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL 948 (1153)
T ss_pred ------CcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh
Confidence 3356678999999999999998765421 1255667778889988877554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.3e-23 Score=221.60 Aligned_cols=328 Identities=23% Similarity=0.292 Sum_probs=227.7
Q ss_pred ccEEEEcCCCcccCc-ccccccceEEEEecccccccc-ccCCCCCccceEEccCCccc--cccchhhhcCCCccEEEccC
Q 048126 474 ENFLVHAGLGLTEAP-EIQNWRNVRRMSLMKNKIENL-SETPTCPHLLSLFLSDNSLK--MIAGDFFQFMPSLRVFNMSN 549 (863)
Q Consensus 474 ~~~~~~~~~~~~~~~-~~~~~~~lr~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~ 549 (863)
-.|+..+..++..+| .+..+.++.+|++.+|.+..+ ..++.++.||++.+..|+++ ++|+++ -++.-|.+||||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh-cccccceeeecch
Confidence 356776666666665 567788999999999988765 34588999999999999665 788884 4699999999999
Q ss_pred CCccccCCccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCc
Q 048126 550 NHLLWKLPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGG 628 (863)
Q Consensus 550 ~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~ 628 (863)
| .+.+.|..+.+-+++-.|+||+|+|..+|.. +-+|+.|-+|+|++| .+..+|+. +..|.+|++|.+++|...
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~--- 186 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN--- 186 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh---
Confidence 9 6778999999999999999999999999976 668999999999998 77889987 889999999999988764
Q ss_pred hhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccce
Q 048126 629 HQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQ 708 (863)
Q Consensus 629 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~ 708 (863)
..-+..|..++.|+.|.++.... .+..++.+..-..+|..++++.++ +..++ .++-.+++|+.|+++++...+ +.
T Consensus 187 -hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~vP-ecly~l~~LrrLNLS~N~ite-L~ 261 (1255)
T KOG0444|consen 187 -HFQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENN-LPIVP-ECLYKLRNLRRLNLSGNKITE-LN 261 (1255)
T ss_pred -HHHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccC-CCcch-HHHhhhhhhheeccCcCceee-ee
Confidence 33455566666777777765443 234444444444577777877643 22222 467778999999999875443 32
Q ss_pred eccccccccccccccCcccEEEEeccCCCCCCc-hhhccCCCcEEEEeccccchhhcccccccccc------------CC
Q 048126 709 MTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLH------------HH 775 (863)
Q Consensus 709 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~------------~~ 775 (863)
... .-..+|++|+|+.+ +++.+| .+..|++|+.|.+.+ +.+..-+.....|.+. -.
T Consensus 262 ~~~---------~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 262 MTE---------GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred ccH---------HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcccccc
Confidence 211 12467888888886 677777 456778888777666 3343322211111100 00
Q ss_pred CCCCCCcCCccceeccCCCccccccccCCCCCCCcceEeecCCCCCCCCC
Q 048126 776 PERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKLP 825 (863)
Q Consensus 776 ~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 825 (863)
.+..+.-+++|+.|.|++ ..|-.+|....-+|.|+.|++...|+|..-|
T Consensus 331 VPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred CchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 023455566666666653 4555566655566666777776666666544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=9.3e-22 Score=207.74 Aligned_cols=294 Identities=19% Similarity=0.212 Sum_probs=211.1
Q ss_pred CcccccccceEEEEecccccccccc-CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCC
Q 048126 487 APEIQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (863)
Q Consensus 487 ~~~~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (863)
++++..+..+..|++++|.+.+.|. +...+++-+|+|++|+|..||...|-++.-|-+||||+| .+..+|..+..|.+
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSM 174 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence 4567778888888888888877764 467788888888888888888888888888888888888 56688888888888
Q ss_pred CCeEEccCCCcccc-chhhhcCCCCCEEecCCccc-cCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCc
Q 048126 566 LEHLDLSGTAITHL-PIELQKLVNLKCLNLEYMYN-LNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLM 643 (863)
Q Consensus 566 L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~-l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 643 (863)
|++|+|++|.+... -..+-.+++|+.|.++++.. +..+|.. +..|.||+.++++.|+.. ..++.+-++.+|+
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp-----~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP-----IVPECLYKLRNLR 248 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC-----cchHHHhhhhhhh
Confidence 88888888865411 11233567788888887642 4567776 778888998888887763 4677788888999
Q ss_pred eEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceecccccccccccccc
Q 048126 644 ALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGF 723 (863)
Q Consensus 644 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l 723 (863)
.|+++.+.++.+..- .....+|+.|.++.+. ++.++ .++.+++.|+.|++.++.-.-+-.|+.+ +.+
T Consensus 249 rLNLS~N~iteL~~~---~~~W~~lEtLNlSrNQ-Lt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSGI--------GKL 315 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMT---EGEWENLETLNLSRNQ-LTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSGI--------GKL 315 (1255)
T ss_pred eeccCcCceeeeecc---HHHHhhhhhhccccch-hccch-HHHhhhHHHHHHHhccCcccccCCccch--------hhh
Confidence 999988876554322 2223477888887643 34443 4678889999998876543221122333 357
Q ss_pred CcccEEEEeccCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCcccccccc
Q 048126 724 HSLHTVKVGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINW 802 (863)
Q Consensus 724 ~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~ 802 (863)
.+|+.+...++ +++-.| .+..++.|+.|.|+... +-.+ +..+.-+|.|+.|++.+.|+|---|.
T Consensus 316 ~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr-LiTL-------------PeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 316 IQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR-LITL-------------PEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc-eeec-------------hhhhhhcCCcceeeccCCcCccCCCC
Confidence 88888888886 677766 57789999999998754 4334 45788899999999999999876544
Q ss_pred CCCCCCCcceEee
Q 048126 803 EALAFPNLKEIRV 815 (863)
Q Consensus 803 ~~~~~p~L~~L~i 815 (863)
...+-.+|+.-+|
T Consensus 381 P~da~~~lefYNI 393 (1255)
T KOG0444|consen 381 PNDARKKLEFYNI 393 (1255)
T ss_pred cchhhhcceeeec
Confidence 3333334544333
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=1.8e-20 Score=197.25 Aligned_cols=314 Identities=18% Similarity=0.202 Sum_probs=158.7
Q ss_pred eEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccC
Q 048126 496 VRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSG 573 (863)
Q Consensus 496 lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (863)
+..|++.+|.+..+. .+..++.||+|+|+.|.+..++...|..-.++++|+|++|.+...-...|.+|.+|-+|.|+.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 555555555444432 123444555555555555555544444444555555555533332333444455555555555
Q ss_pred CCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcCh
Q 048126 574 TAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSW 652 (863)
Q Consensus 574 ~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 652 (863)
|+++.+|.. |.+|++|+.|+|..| .+..+....+.+|++|+.|.+..|.+..- .-+.+-.|.+++.|++..|..
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL----~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKL----DDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred CcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccc----cCcceeeecccceeecccchh
Confidence 555555433 333555555555544 23333222344555555555554443311 111233445555555555544
Q ss_pred HHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEe
Q 048126 653 EALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVG 732 (863)
Q Consensus 653 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~ 732 (863)
..+.. ...-..+.|+.|+++++ .+..+...+.+..+.|+.|+++.+. ++.+.+..+. .+..|++|.|+
T Consensus 282 ~~vn~--g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~--------~L~~Le~LnLs 349 (873)
T KOG4194|consen 282 QAVNE--GWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFR--------VLSQLEELNLS 349 (873)
T ss_pred hhhhc--ccccccchhhhhccchh-hhheeecchhhhcccceeEeccccc-cccCChhHHH--------HHHHhhhhccc
Confidence 33321 00111235555555542 2333344444455666666666543 3334333332 35666666666
Q ss_pred ccCCCCCCc--hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccC-CCCCCC
Q 048126 733 FCFKLKDLT--WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWE-ALAFPN 809 (863)
Q Consensus 733 ~c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~ 809 (863)
++ ++..+. .+..+.+|+.|+|++. .+.-.+.+ . ...+.++|+|+.|.|.+ .+++.|+.. ...+++
T Consensus 350 ~N-si~~l~e~af~~lssL~~LdLr~N-~ls~~IED--a-------a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 350 HN-SIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIED--A-------AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEA 417 (873)
T ss_pred cc-chHHHHhhHHHHhhhhhhhcCcCC-eEEEEEec--c-------hhhhccchhhhheeecC-ceeeecchhhhccCcc
Confidence 65 444443 2345677777777663 23322221 0 23566789999999988 688888763 345888
Q ss_pred cceEeecCCCCCCCCCCC-CCCCCCCceEEE
Q 048126 810 LKEIRVEGCPKLFKLPLD-SNSAKGCKVVIK 839 (863)
Q Consensus 810 L~~L~i~~C~~L~~lp~~-~~~~~L~~l~i~ 839 (863)
|+.|++.+. -+.++... +....|++|.+.
T Consensus 418 LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 418 LEHLDLGDN-AIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred cceecCCCC-cceeecccccccchhhhhhhc
Confidence 999998764 55554433 333566666654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=1.1e-20 Score=198.85 Aligned_cols=294 Identities=21% Similarity=0.276 Sum_probs=173.7
Q ss_pred ccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCC-ccccccCC
Q 048126 489 EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP-SGISTLVS 565 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~ 565 (863)
.+..++.+|.|+++.|.+..++ .++.-.+++.|+|++|.++.+..+.|.++.+|-+|.|++|++ ..+| ..|.+|++
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPK 222 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcch
Confidence 3445566777777777776653 345556677777777777777666677777777777777743 3444 34555777
Q ss_pred CCeEEccCCCcccc-chhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCce
Q 048126 566 LEHLDLSGTAITHL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMA 644 (863)
Q Consensus 566 L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~ 644 (863)
|+.|+|..|.|... -..|..|.+|+.|.+..| .+..+.++++-.|.++++|++..|.+... .-+.+-+|+.|+.
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAV----NEGWLFGLTSLEQ 297 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhh----hcccccccchhhh
Confidence 77777777766644 335667777777777666 55666666667777777777776665422 2233556677777
Q ss_pred EEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccC
Q 048126 645 LTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFH 724 (863)
Q Consensus 645 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~ 724 (863)
|+++.|.+..+. ....++.+.|+.|+|+++ .++.++..++..++.|+.|.++.+. +..+....+ ..++
T Consensus 298 L~lS~NaI~rih--~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af--------~~ls 365 (873)
T KOG4194|consen 298 LDLSYNAIQRIH--IDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAF--------VGLS 365 (873)
T ss_pred hccchhhhheee--cchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccc-hHHHHhhHH--------HHhh
Confidence 777766655443 233445567777777653 3455555666667777777777653 222222222 2366
Q ss_pred cccEEEEeccCC---CCCC-chhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCcccccc
Q 048126 725 SLHTVKVGFCFK---LKDL-TWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCI 800 (863)
Q Consensus 725 ~L~~L~L~~c~~---l~~l-~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i 800 (863)
+|++|+|+.+.- +++- ..+..+++|+.|.+.+ +.++.+. ...+.+|++|+.|+|-+. -+.+|
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~------------krAfsgl~~LE~LdL~~N-aiaSI 431 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIP------------KRAFSGLEALEHLDLGDN-AIASI 431 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecc------------hhhhccCcccceecCCCC-cceee
Confidence 777777665421 1111 1233467777777776 4566552 235566777777777663 33333
Q ss_pred ccCC-CCCCCcceEee
Q 048126 801 NWEA-LAFPNLKEIRV 815 (863)
Q Consensus 801 ~~~~-~~~p~L~~L~i 815 (863)
.... ..| .|++|.+
T Consensus 432 q~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVM 446 (873)
T ss_pred cccccccc-hhhhhhh
Confidence 3322 223 5555544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=5.3e-18 Score=171.34 Aligned_cols=306 Identities=23% Similarity=0.289 Sum_probs=192.1
Q ss_pred cCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCC
Q 048126 486 EAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (863)
Q Consensus 486 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (863)
-++.+..+.++..|+++.|.+..+|+++.|+.|..|.+..|.+..+|....+++.+|.+|||++| .+.++|..++.|.+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrs 276 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRS 276 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhh
Confidence 45677888899999999999999999999999999999999999999888889999999999999 67799999999999
Q ss_pred CCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCC--CCcEEEe----eccccccC-------chhhH
Q 048126 566 LEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFS--KLQVLRI----LKSNVLFG-------GHQFL 632 (863)
Q Consensus 566 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~--~L~~L~l----~~~~~~~~-------~~~~~ 632 (863)
|++||+++|.|+.+|.+++++ .|+.|-+.+|+ +..+-..++++-+ =|++|+- .+-....+ .....
T Consensus 277 L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 277 LERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 999999999999999999999 99999999983 3444443332211 1222211 00000000 00111
Q ss_pred HHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeecc-----------------------ccCCCcccccchhh
Q 048126 633 VEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRC-----------------------FNDSKSLDIFCLAC 689 (863)
Q Consensus 633 ~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~-----------------------~~~~~~~~~~~l~~ 689 (863)
......+.+.+.|+++....+.++.-.....-..-.+...++. .+....+ ...++.
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv-~~~l~~ 433 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV-PLELSQ 433 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc-hHHHHh
Confidence 1122233344444444333222221111100000111112211 1111111 133555
Q ss_pred cCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhcccccc
Q 048126 690 LHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKL 769 (863)
Q Consensus 690 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~ 769 (863)
+++|..|+++++ .+.+++.+... +..|+.|+|+.+ +...+|.+-+.+...++-+.+.+.+..+.
T Consensus 434 l~kLt~L~L~NN-~Ln~LP~e~~~---------lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd----- 497 (565)
T KOG0472|consen 434 LQKLTFLDLSNN-LLNDLPEEMGS---------LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVD----- 497 (565)
T ss_pred hhcceeeecccc-hhhhcchhhhh---------hhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccC-----
Confidence 677777777764 44445444432 566777777775 55555544333322222233324444431
Q ss_pred ccccCCCCCCCCcCCccceeccCCCccccccccCCCCCCCcceEeecCCC
Q 048126 770 SQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCP 819 (863)
Q Consensus 770 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 819 (863)
+.....+.+|.+|++.+ ..+..+|...+.|.+|++|.+.|.|
T Consensus 498 -------~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 498 -------PSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -------hHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 23466788888888887 5778888888888999999998854
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=1.8e-18 Score=174.69 Aligned_cols=324 Identities=18% Similarity=0.181 Sum_probs=168.7
Q ss_pred cccccceEEEEecccccccccc-CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCe
Q 048126 490 IQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (863)
Q Consensus 490 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (863)
+..+.++..+.+.+|.+..++. ...++.|..|+...|.+..+|+. ++.|..|.-|+|..| .+..+| +|..+..|..
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~-lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~E 232 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPE-LGGLESLELLYLRRN-KIRFLP-EFPGCSLLKE 232 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChh-hcchhhhHHHHhhhc-ccccCC-CCCccHHHHH
Confidence 3334444444444444444322 12344444444444444444444 444444444444444 233444 4444444555
Q ss_pred EEccCCCccccchhhh-cCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEE
Q 048126 569 LDLSGTAITHLPIELQ-KLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTI 647 (863)
Q Consensus 569 L~L~~~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l 647 (863)
|.++.|.|+.+|..++ +|.+|..||+++| .++++|.+ +..+.+|..|++++|.+.+ .+.++++| +|+.|.+
T Consensus 233 lh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde-~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 233 LHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE-ICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLAL 304 (565)
T ss_pred HHhcccHHHhhHHHHhcccccceeeecccc-ccccCchH-HHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhh
Confidence 5555555555555555 7788888888888 77888887 7788888999988887753 56678888 8888888
Q ss_pred EEcChHHHHHHhhh---hhhhhccee----eeeccccCC-------CcccccchhhcCCCceEEEcCCcccccceecccc
Q 048126 648 TLKSWEALQELLIS---QELQRCTQS----LFLRCFNDS-------KSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQR 713 (863)
Q Consensus 648 ~~~~~~~~~~l~~~---~~~~~~L~~----L~l~~~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~ 713 (863)
.++....+..-.-. ....++|++ =.++...+. .....+....+.+.+.|++++- .+++++.+.+.
T Consensus 305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfe 383 (565)
T KOG0472|consen 305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFE 383 (565)
T ss_pred cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHH
Confidence 88876655432211 111223332 111111110 0111122333456666766653 23323222111
Q ss_pred ccc---------------------------------------c--ccccccCcccEEEEeccCCCCCCc-hhhccCCCcE
Q 048126 714 SSV---------------------------------------N--QLARGFHSLHTVKVGFCFKLKDLT-WLVFAPSLKS 751 (863)
Q Consensus 714 ~~~---------------------------------------~--~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~ 751 (863)
.+. + .....+++|+.|+|+++ -+-++| ..+.+-.|+.
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQT 462 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhhe
Confidence 100 0 00123444445555443 233333 2334444555
Q ss_pred EEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccC-CCCCCCcceEeecCCCCCCCCCCCCCC
Q 048126 752 IVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWE-ALAFPNLKEIRVEGCPKLFKLPLDSNS 830 (863)
Q Consensus 752 L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~ 830 (863)
|+|+.. ....+ +........|+.+-.++ .++.+++.. ...|.+|..|++.+ ..+..+|.+...
T Consensus 463 LnlS~N-rFr~l-------------P~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgn 526 (565)
T KOG0472|consen 463 LNLSFN-RFRML-------------PECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGN 526 (565)
T ss_pred eccccc-ccccc-------------hHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhcc
Confidence 555442 22222 11111222233333332 455555543 55689999999976 689999988887
Q ss_pred -CCCCceEEEccc
Q 048126 831 -AKGCKVVIKGEE 842 (863)
Q Consensus 831 -~~L~~l~i~~~~ 842 (863)
.+++.++++|.+
T Consensus 527 mtnL~hLeL~gNp 539 (565)
T KOG0472|consen 527 MTNLRHLELDGNP 539 (565)
T ss_pred ccceeEEEecCCc
Confidence 999999999864
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=3.4e-17 Score=182.17 Aligned_cols=87 Identities=30% Similarity=0.433 Sum_probs=66.1
Q ss_pred ceEEEEecccccccccc-CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccC
Q 048126 495 NVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSG 573 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (863)
++.+|++++|.+..+|. +..+++|+.|+++.|.+..+|.+ .+++++|++|.|.+| ....+|.++..+.+|++|++++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccch
Confidence 57788888887776653 36677888888888877777744 777888888888888 6667888888888888888888
Q ss_pred CCccccchhh
Q 048126 574 TAITHLPIEL 583 (863)
Q Consensus 574 ~~l~~lp~~~ 583 (863)
|.+..+|..+
T Consensus 124 N~f~~~Pl~i 133 (1081)
T KOG0618|consen 124 NHFGPIPLVI 133 (1081)
T ss_pred hccCCCchhH
Confidence 8777666544
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=2.4e-16 Score=141.08 Aligned_cols=164 Identities=26% Similarity=0.399 Sum_probs=141.2
Q ss_pred ccCcccccccceEEEEecccccccc-ccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCcccccc
Q 048126 485 TEAPEIQNWRNVRRMSLMKNKIENL-SETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTL 563 (863)
Q Consensus 485 ~~~~~~~~~~~lr~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l 563 (863)
.+.+.+..++.+.+|.+++|.+..+ |.+..+.+|++|++++|+++.+|.+ ++.++.||.|+++-| ....+|..+|.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCC
Confidence 3456677778899999999998776 4568899999999999999999987 899999999999988 556899999999
Q ss_pred CCCCeEEccCCCcc--ccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCcc
Q 048126 564 VSLEHLDLSGTAIT--HLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKH 641 (863)
Q Consensus 564 ~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 641 (863)
+-|+.|||.+|++. .+|..|-.++.|+.|++++| ...-+|.. +++|++||.|.+..+... ..+.+++.|+.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll-----~lpkeig~lt~ 174 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL-----SLPKEIGDLTR 174 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh-----hCcHHHHHHHH
Confidence 99999999999886 78999999999999999998 45888887 899999999999888774 46888999999
Q ss_pred CceEEEEEcChHHHHH
Q 048126 642 LMALTITLKSWEALQE 657 (863)
Q Consensus 642 L~~L~l~~~~~~~~~~ 657 (863)
|+.|+|..+....++.
T Consensus 175 lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 175 LRELHIQGNRLTVLPP 190 (264)
T ss_pred HHHHhcccceeeecCh
Confidence 9999998877655543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.1e-13 Score=159.68 Aligned_cols=267 Identities=22% Similarity=0.209 Sum_probs=160.7
Q ss_pred HHHHHHhhhccccccEEEEcCCCcccCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCC
Q 048126 461 MVLWIACKIEKEKENFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMP 540 (863)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~ 540 (863)
.|....+++.......+...+..++.+|... ..+++.|++.+|.+..+|.. .++|++|++++|.++.+|.. .+
T Consensus 190 ~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~ 262 (788)
T PRK15387 190 AVVQKMRACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PP 262 (788)
T ss_pred HHHHHHHHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----cc
Confidence 3333333333333445555555555555421 24788888888888877653 57888899988888887642 46
Q ss_pred CccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEee
Q 048126 541 SLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRIL 620 (863)
Q Consensus 541 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~ 620 (863)
+|+.|++++| .+..+|... .+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. . .+|+.|++.
T Consensus 263 sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls 330 (788)
T PRK15387 263 GLLELSIFSN-PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAY 330 (788)
T ss_pred ccceeeccCC-chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccc
Confidence 7888888888 455666533 5677888888888888853 467888888887 66777652 2 356677777
Q ss_pred ccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcC
Q 048126 621 KSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAG 700 (863)
Q Consensus 621 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 700 (863)
+|.+..- + .+ ..+|+.|+++.|....++. ...+|+.|.+.++. +..++ .+ +++|+.|++++
T Consensus 331 ~N~L~~L-----P-~l--p~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~-L~~LP--~l--~~~L~~LdLs~ 391 (788)
T PRK15387 331 NNQLTSL-----P-TL--PSGLQELSVSDNQLASLPT------LPSELYKLWAYNNR-LTSLP--AL--PSGLKELIVSG 391 (788)
T ss_pred cCccccc-----c-cc--ccccceEecCCCccCCCCC------CCcccceehhhccc-cccCc--cc--ccccceEEecC
Confidence 7655421 1 01 1367777777766554432 12356666665532 22221 11 24677777776
Q ss_pred CcccccceeccccccccccccccCcccEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCC
Q 048126 701 RKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKK 780 (863)
Q Consensus 701 ~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~ 780 (863)
|. ++.++. .+++|+.|+++++ .++.+|.+ +.+|+.|++++ +.++.+ +..+
T Consensus 392 N~-Lt~LP~------------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~-NqLt~L-------------P~sl 441 (788)
T PRK15387 392 NR-LTSLPV------------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYR-NQLTRL-------------PESL 441 (788)
T ss_pred Cc-ccCCCC------------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhcc-Cccccc-------------ChHH
Confidence 53 332211 1356777777776 45656532 34666677766 335544 3345
Q ss_pred CcCCccceeccCCCc
Q 048126 781 SVFAKLQFLSLENLR 795 (863)
Q Consensus 781 ~~~p~L~~L~l~~~~ 795 (863)
..+++|+.|+|++++
T Consensus 442 ~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 442 IHLSSETTVNLEGNP 456 (788)
T ss_pred hhccCCCeEECCCCC
Confidence 566777777777643
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.49 E-value=2.5e-14 Score=168.91 Aligned_cols=322 Identities=23% Similarity=0.248 Sum_probs=207.1
Q ss_pred EEEEcCCCcccCcccccccceEEEEecccc--cccccc--CCCCCccceEEccCC-ccccccchhhhcCCCccEEEccCC
Q 048126 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNK--IENLSE--TPTCPHLLSLFLSDN-SLKMIAGDFFQFMPSLRVFNMSNN 550 (863)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~ 550 (863)
.++.........+....+++++.|-+..|. +..++. +..++.|++|+|++| .+..+|.. ++++-+||||+|+++
T Consensus 527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT 605 (889)
T ss_pred EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence 344444444444444555689999999885 555555 678999999999998 66777766 899999999999999
Q ss_pred CccccCCccccccCCCCeEEccCC-CccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCch
Q 048126 551 HLLWKLPSGISTLVSLEHLDLSGT-AITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGH 629 (863)
Q Consensus 551 ~~~~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 629 (863)
.+..+|.++++|..|.+||+..+ .+..+|.....|.+|++|.+.... .......++.+.+|++|....+....
T Consensus 606 -~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s--- 679 (889)
T KOG4658|consen 606 -GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISS--- 679 (889)
T ss_pred -CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecch---
Confidence 67799999999999999999998 455667777779999999997652 12222235555666666655443321
Q ss_pred hhHHHHHcCCccCceEEEEEc-ChHHHHHHhhhhhhhhcceeeeeccccCCCccc--c--cchh-hcCCCceEEEcCCcc
Q 048126 630 QFLVEELMGMKHLMALTITLK-SWEALQELLISQELQRCTQSLFLRCFNDSKSLD--I--FCLA-CLHNLNKLYVAGRKH 703 (863)
Q Consensus 630 ~~~~~~l~~L~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~--~~l~-~~~~L~~L~l~~~~~ 703 (863)
......+..++.|+++..... ................+|+.|.+.+|...+... . .... .++++..+.+.+|..
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 123445555555553332211 001112222233344689999999987643221 0 0111 245777777888877
Q ss_pred cccceeccccccccccccccCcccEEEEeccCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCc
Q 048126 704 LEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSV 782 (863)
Q Consensus 704 ~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 782 (863)
..+ +.|. ...|+|+.|.+..|..++.+. ....+..++.+.+.. +.+..... ....+.
T Consensus 760 ~r~--l~~~--------~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~~-----------~~~l~~ 817 (889)
T KOG4658|consen 760 LRD--LTWL--------LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLRM-----------LCSLGG 817 (889)
T ss_pred ccc--cchh--------hccCcccEEEEecccccccCCCHHHHhhhcccEEecc-ccccccee-----------eecCCC
Confidence 774 3433 237999999999998887754 444555565543333 22222200 123445
Q ss_pred CCccceeccCCCccccccccCC----CCCCCcceEeecCC-CCCCCCCCC
Q 048126 783 FAKLQFLSLENLRNLCCINWEA----LAFPNLKEIRVEGC-PKLFKLPLD 827 (863)
Q Consensus 783 ~p~L~~L~l~~~~~L~~i~~~~----~~~p~L~~L~i~~C-~~L~~lp~~ 827 (863)
||++..+.+... .|..+..+. ..+|.+.++.+.+| +++..+|.+
T Consensus 818 l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 818 LPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred CceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCc
Confidence 666666665552 355554444 56899999999997 899999976
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=4.3e-13 Score=154.96 Aligned_cols=255 Identities=22% Similarity=0.208 Sum_probs=187.0
Q ss_pred ceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC
Q 048126 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT 574 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (863)
.-..|+++.+.+..+|... .++|+.|++.+|.++.+|.. +++|++|+|++| .+..+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 4567889999888877632 35899999999999988752 689999999999 55577753 468899999999
Q ss_pred CccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHH
Q 048126 575 AITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEA 654 (863)
Q Consensus 575 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 654 (863)
.++.+|... .+|+.|++++| .++.+|.. +++|+.|++++|.+..- +. -..+|+.|.+..|....
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~L-----p~---lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL-----PA---LPSELCKLWAYNNQLTS 336 (788)
T ss_pred chhhhhhch---hhcCEEECcCC-cccccccc----ccccceeECCCCccccC-----CC---CcccccccccccCcccc
Confidence 999888633 67889999998 67888862 47899999998876531 11 12356777787776655
Q ss_pred HHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEecc
Q 048126 655 LQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFC 734 (863)
Q Consensus 655 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 734 (863)
++. ++.+|+.|+++++. +..++ .+ .++|+.|++++|. +..++ . .+++|+.|+|++|
T Consensus 337 LP~------lp~~Lq~LdLS~N~-Ls~LP--~l--p~~L~~L~Ls~N~-L~~LP-~-----------l~~~L~~LdLs~N 392 (788)
T PRK15387 337 LPT------LPSGLQELSVSDNQ-LASLP--TL--PSELYKLWAYNNR-LTSLP-A-----------LPSGLKELIVSGN 392 (788)
T ss_pred ccc------cccccceEecCCCc-cCCCC--CC--Ccccceehhhccc-cccCc-c-----------cccccceEEecCC
Confidence 443 23589999998754 33332 12 3688899988764 43332 1 2468999999997
Q ss_pred CCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCCCCCcceEe
Q 048126 735 FKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIR 814 (863)
Q Consensus 735 ~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~ 814 (863)
.++.+|.. .++|+.|+++++. ++.+ +. .+.+|+.|++++ .+++.+|.....+++|+.|+
T Consensus 393 -~Lt~LP~l--~s~L~~LdLS~N~-LssI-------------P~---l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 393 -RLTSLPVL--PSELKELMVSGNR-LTSL-------------PM---LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVN 451 (788)
T ss_pred -cccCCCCc--ccCCCEEEccCCc-CCCC-------------Cc---chhhhhhhhhcc-CcccccChHHhhccCCCeEE
Confidence 67777753 4789999999954 5544 11 245788999988 56888888777899999999
Q ss_pred ecCCC
Q 048126 815 VEGCP 819 (863)
Q Consensus 815 i~~C~ 819 (863)
+++++
T Consensus 452 Ls~N~ 456 (788)
T PRK15387 452 LEGNP 456 (788)
T ss_pred CCCCC
Confidence 98864
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=6.1e-15 Score=164.50 Aligned_cols=300 Identities=21% Similarity=0.228 Sum_probs=174.2
Q ss_pred cceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccC
Q 048126 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSG 573 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (863)
+++++|...+|.+..+...+--.+|.+++++.|.+..+| ++++.+.+|..|+..+| .+..+|..+..+.+|++|++..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhh
Confidence 356677777776654444455567777888888777777 66777888888888777 4467777777777888888888
Q ss_pred CCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCC-CcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcCh
Q 048126 574 TAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSK-LQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSW 652 (863)
Q Consensus 574 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~-L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 652 (863)
|.++.+|+....++.|++|+|..| .+..+|+..+..+.. |+.|..+.+.+..-. .. +=..+..|+.|.+..|..
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp---~~-~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLP---SY-EENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccc---cc-cchhhHHHHHHHHhcCcc
Confidence 888878777777788888888776 667777654443332 555554443332110 00 000112233333333322
Q ss_pred H--HHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEE
Q 048126 653 E--ALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVK 730 (863)
Q Consensus 653 ~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 730 (863)
+ .++.+ ....+|+.|+|+++ .+..++-..+.+++.|+.|+++||. ++.++... ..++.|+.|.
T Consensus 372 td~c~p~l----~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tv---------a~~~~L~tL~ 436 (1081)
T KOG0618|consen 372 TDSCFPVL----VNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDTV---------ANLGRLHTLR 436 (1081)
T ss_pred cccchhhh----ccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHHH---------HhhhhhHHHh
Confidence 1 11211 11236666666653 2344444556677777777777753 44344332 2367777777
Q ss_pred EeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCCCCCc
Q 048126 731 VGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALAFPNL 810 (863)
Q Consensus 731 L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L 810 (863)
..++ .+..+|.+.++|.|+.++++. +.++.+.. +.... -|+|++|++++...+ ..+...|+.+
T Consensus 437 ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l-----------~~~~p-~p~LkyLdlSGN~~l---~~d~~~l~~l 499 (1081)
T KOG0618|consen 437 AHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEVTL-----------PEALP-SPNLKYLDLSGNTRL---VFDHKTLKVL 499 (1081)
T ss_pred hcCC-ceeechhhhhcCcceEEeccc-chhhhhhh-----------hhhCC-CcccceeeccCCccc---ccchhhhHHh
Confidence 7664 567777777888888888875 55666532 11111 278888888876542 1223335555
Q ss_pred ceEeecCCCCCCCCCCCCCCCCC
Q 048126 811 KEIRVEGCPKLFKLPLDSNSAKG 833 (863)
Q Consensus 811 ~~L~i~~C~~L~~lp~~~~~~~L 833 (863)
+.+...+. .+...|.+.....+
T Consensus 500 ~~l~~~~i-~~~~~~d~~~n~~~ 521 (1081)
T KOG0618|consen 500 KSLSQMDI-TLNNTPDGNVNAFL 521 (1081)
T ss_pred hhhhheec-ccCCCCccccceeh
Confidence 55544332 22344444433333
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=2.1e-12 Score=150.34 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=57.4
Q ss_pred ceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC
Q 048126 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT 574 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (863)
.++.|++.+|.+..+|.. .+++|+.|++++|.++.+|..+ ..+|+.|+|++| .+..+|..+. .+|++|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcCChhHh--CCCCEEECcCC
Confidence 455555555555554432 1245555555555555555432 124555555555 2334554443 34555555555
Q ss_pred CccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeecccc
Q 048126 575 AITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 575 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 624 (863)
+++.+|..+. .+|++|++++| .++.+|.. +. ++|+.|++.+|.+
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSL 316 (754)
T ss_pred ccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcc
Confidence 5555554443 35555555555 44445432 11 2445555554443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=1.2e-12 Score=152.44 Aligned_cols=247 Identities=18% Similarity=0.194 Sum_probs=158.1
Q ss_pred ceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC
Q 048126 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT 574 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (863)
+...|.+.++.+..+|.. -.++|+.|++++|.++.+|...+ .+|++|++++| .+..+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 456788888887777652 23689999999999999987643 58999999999 4567887664 47999999999
Q ss_pred CccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHH
Q 048126 575 AITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEA 654 (863)
Q Consensus 575 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 654 (863)
.+..+|..+. .+|+.|++++| .+..+|.. + .++|+.|++++|.+..- +..+. ++|+.|+++.|....
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l--~~sL~~L~Ls~N~Lt~L-----P~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-L--PEELRYLSVYDNSIRTL-----PAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-c--CCCCcEEECCCCccccC-----cccch--hhHHHHHhcCCcccc
Confidence 9999998775 58999999987 67888875 3 25899999998876431 11111 346666666665543
Q ss_pred HHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEecc
Q 048126 655 LQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFC 734 (863)
Q Consensus 655 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 734 (863)
++. ...++|+.|.+.++.- +.++ ..+ +++|+.|++++|. +..++ .. .+++|+.|+|++|
T Consensus 319 LP~-----~l~~sL~~L~Ls~N~L-t~LP-~~l--~~sL~~L~Ls~N~-L~~LP-~~----------lp~~L~~LdLs~N 377 (754)
T PRK15370 319 LPE-----TLPPGLKTLEAGENAL-TSLP-ASL--PPELQVLDVSKNQ-ITVLP-ET----------LPPTITTLDVSRN 377 (754)
T ss_pred CCc-----cccccceeccccCCcc-ccCC-hhh--cCcccEEECCCCC-CCcCC-hh----------hcCCcCEEECCCC
Confidence 321 1224677777766542 2222 112 2577777777764 33222 11 1356777777776
Q ss_pred CCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCC
Q 048126 735 FKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENL 794 (863)
Q Consensus 735 ~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 794 (863)
.++.+|.- ..++|+.|+++++ .+..+... + +.....+|++..|.+.+.
T Consensus 378 -~Lt~LP~~-l~~sL~~LdLs~N-~L~~LP~s-----l----~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 378 -ALTNLPEN-LPAALQIMQASRN-NLVRLPES-----L----PHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred -cCCCCCHh-HHHHHHHHhhccC-CcccCchh-----H----HHHhhcCCCccEEEeeCC
Confidence 45555531 1235777777764 34433110 0 112233466677777654
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.35 E-value=7.5e-11 Score=146.37 Aligned_cols=294 Identities=16% Similarity=0.229 Sum_probs=180.0
Q ss_pred CCCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHh
Q 048126 125 CEPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRI 203 (863)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l 203 (863)
...+|-|..-.+.+.+ ....+++.|+|++|.||||++..+.... . .++|+++.. +.+...+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~-----~--~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK-----N--NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC-----C--CeEEEecCcccCCHHHHHHHHHHHH
Confidence 3567888766665543 1367899999999999999999988543 1 589999964 446666777777777
Q ss_pred CCCCcc-----------ccCCChhHHHHHHHHHhc--cCcEEEEEeccCCccc--cc-cccCCCCCCCCCcEEEEecCch
Q 048126 204 GFLDES-----------WKNGSLEDKASDILRILS--KKKFLLLLDDIWERVD--LT-KVGVPFPDPENKSKIVFTTRFL 267 (863)
Q Consensus 204 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~--~~-~~~~~l~~~~~gs~IivTtR~~ 267 (863)
+..... ....+.......+...+. +.+++|||||+....+ .. .+...+.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421110 000122233333433333 5789999999976432 11 2222222334567898999984
Q ss_pred hhhh--ccc-ccceEeec----CCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCCChh
Q 048126 268 EICG--AMK-AHEFLKVE----CLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKKTTQ 340 (863)
Q Consensus 268 ~v~~--~~~-~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~ 340 (863)
.-.. ... ......+. +|+.+|+.++|....+... -.+...+|++.|+|.|+++..++..+.......
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 2211 111 12234555 9999999999987654321 245578999999999999999887775432110
Q ss_pred HHHHHHHHHHhcCCCCCCC-cchhhhhh-hhhcCCCCchhhHHHHhHhccCCCCccccHHhHHHHHHhcCCCCCcccchh
Q 048126 341 EWHHAIQILRRSSSEFPGM-GKEVYPLL-KFSYDSLPDDTIRSCFLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGA 418 (863)
Q Consensus 341 ~w~~~l~~l~~~~~~~~~~-~~~~~~~l-~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 418 (863)
......+ .+. ...+...+ .-.++.||+ ..+..++..|+++ .++.+ +.. .+..
T Consensus 237 --~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~~------- 290 (903)
T PRK04841 237 --HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVTG------- 290 (903)
T ss_pred --hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHcC-------
Confidence 0111111 111 12344433 334789999 7999999999987 23322 222 1111
Q ss_pred hhhHHHHHHHHHHhccccccccccccccccceEEeehhHHHHHHHHHH
Q 048126 419 YNEGYYIIGILLHACLLEEEEGDIAEEKSGEHVVKMHDVIRDMVLWIA 466 (863)
Q Consensus 419 ~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdli~d~a~~~~ 466 (863)
.+.+...+++|.+.+++.... ++....|++|++++++.+...
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~------~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRM------DDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEee------cCCCCEEehhHHHHHHHHHHH
Confidence 223466799999999975321 011347889999999988764
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=4.3e-14 Score=126.81 Aligned_cols=146 Identities=27% Similarity=0.442 Sum_probs=128.4
Q ss_pred cCcccccccceEEEEecccccccccc-CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcc-ccCCcccccc
Q 048126 486 EAPEIQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL-WKLPSGISTL 563 (863)
Q Consensus 486 ~~~~~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~-~~lp~~i~~l 563 (863)
.+|.+..+.++..|++.+|.++.+|. ++.++.|+.|++.-|.+..+|.+ |+.++.|.+|||++|... ..+|..+..|
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccccccccCCcchhHH
Confidence 34678888999999999999999865 48999999999999999888877 899999999999999654 4599999999
Q ss_pred CCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCC
Q 048126 564 VSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGM 639 (863)
Q Consensus 564 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L 639 (863)
..|+.|.|+.|.+..+|..+++|++||.|.+++| .+-.+|.. ++.|+.|++|++.++.... .+.+++++
T Consensus 127 ~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~v-----lppel~~l 195 (264)
T KOG0617|consen 127 TTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLTV-----LPPELANL 195 (264)
T ss_pred HHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceeee-----cChhhhhh
Confidence 9999999999999999999999999999999998 66789998 8999999999999987743 34455544
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=1.6e-09 Score=120.45 Aligned_cols=294 Identities=15% Similarity=0.063 Sum_probs=171.1
Q ss_pred CCccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
+.++||++++++|...+.+ .....+.|+|++|+|||++++.++++.. .....-.+++|.+....+...++..++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 5689999999999998843 3456788999999999999999999872 2222235677777777788889999999
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhcc--CcEEEEEeccCCcc------ccccccCCCCCCCCC--cEEEEecCchhhhh
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILSK--KKFLLLLDDIWERV------DLTKVGVPFPDPENK--SKIVFTTRFLEICG 271 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~------~~~~~~~~l~~~~~g--s~IivTtR~~~v~~ 271 (863)
++..........+.++....+.+.++. ++.+||||+++... .+..+...+.. ..+ ..+|.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhh
Confidence 986522111233456677777777753 56899999998632 12222221111 122 23566655543322
Q ss_pred ccc-------ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHH----hCCchhHHHHHHHHh--c---C
Q 048126 272 AMK-------AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKE----YAGLPLALITIGRAM--T---C 335 (863)
Q Consensus 272 ~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~----c~glPlai~~~~~~l--~---~ 335 (863)
... ....+.+++++.++..+++...+...- ....--.+..+.|++. .|..+.|+..+-.+. . +
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 111 124678999999999999998764221 0001112333444444 455777776654322 1 1
Q ss_pred C--CChhHHHHHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhc-cCCC-CccccHHhHHHH--HHhcCC
Q 048126 336 K--KTTQEWHHAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCG-LFPE-DYRIRKSELIDC--WIGEGF 409 (863)
Q Consensus 336 ~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~-~fp~-~~~i~~~~li~~--w~a~g~ 409 (863)
. -+.+....+.+.+.. ....-.+..||. +.|..+..++ .... ...+...++... .+++.+
T Consensus 267 ~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 1 255666666554421 223345778988 4443332222 1221 123444444432 222211
Q ss_pred CCCcccchhhhhHHHHHHHHHHhccccccc
Q 048126 410 LDQYDRSGAYNEGYYIIGILLHACLLEEEE 439 (863)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 439 (863)
-.. +-.......|+++|...+++....
T Consensus 333 ~~~---~~~~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 333 GYE---PRTHTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred CCC---cCcHHHHHHHHHHHHhcCCeEEEE
Confidence 110 112344677999999999998653
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.26 E-value=1.1e-09 Score=115.08 Aligned_cols=181 Identities=16% Similarity=0.189 Sum_probs=116.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
.+.+++.|+|++|+||||+++.+++.. .. ..+ ..+|+ +....+..+++..++..++.... ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 445689999999999999999999987 21 221 22343 33345778899999998877542 2222333334433
Q ss_pred Hh-----ccCcEEEEEeccCCcc--ccccccC---CCCCCCCCcEEEEecCchhhhhcc----------cccceEeecCC
Q 048126 225 IL-----SKKKFLLLLDDIWERV--DLTKVGV---PFPDPENKSKIVFTTRFLEICGAM----------KAHEFLKVECL 284 (863)
Q Consensus 225 ~l-----~~kr~LlVlDdv~~~~--~~~~~~~---~l~~~~~gs~IivTtR~~~v~~~~----------~~~~~~~l~~L 284 (863)
.+ .+++.+||+||++... .++.+.. ..........|++|.... ....+ .....+.++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 22 5788999999998753 3333321 111122233556665543 21111 11335789999
Q ss_pred ChHHHHHHHHHHhcccccCCC-CChHHHHHHHHHHhCCchhHHHHHHHHh
Q 048126 285 GPEDAWRLFRENLRRDVLDNH-PDIPELARSVAKEYAGLPLALITIGRAM 333 (863)
Q Consensus 285 ~~~e~~~lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~glPlai~~~~~~l 333 (863)
+.+|..+++...+........ .--.+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999987654331112 2235789999999999999999999776
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=1e-12 Score=133.49 Aligned_cols=253 Identities=19% Similarity=0.216 Sum_probs=123.4
Q ss_pred ceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCc-cccccCCCCeEEc
Q 048126 495 NVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPS-GISTLVSLEHLDL 571 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~L 571 (863)
....|.+..|.|+.+|. +..+++||.|+|++|.|+.|.++.|.+++.|-.|-+-++..+..+|+ .+++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 44555555566555543 35555666666666666655555566665555554444224445543 3455555666655
Q ss_pred cCCCccccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchh--------hHHHHHcCCccC
Q 048126 572 SGTAITHLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQ--------FLVEELMGMKHL 642 (863)
Q Consensus 572 ~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~--------~~~~~l~~L~~L 642 (863)
.-|++..++. .+..|++|..|.+.+| .+..++.+.+..+.+++++.+..+....+..- ..+.+.+.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 5555554432 3555666666666555 34555554455555555555544332211000 000001110000
Q ss_pred ceEEEEEcChHHHHHHhhhhhhhhcceee---eeccccCCCcccccchhhcCCCceEEEcCCcccccceecccccccccc
Q 048126 643 MALTITLKSWEALQELLISQELQRCTQSL---FLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQL 719 (863)
Q Consensus 643 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L---~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~ 719 (863)
....+.... +..+ ...++..+++.+ -...|......+..++..+++|++|+++++ .++.+...|+.
T Consensus 227 ~p~rl~~~R---i~q~-~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe------ 295 (498)
T KOG4237|consen 227 SPYRLYYKR---INQE-DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIEDGAFE------ 295 (498)
T ss_pred chHHHHHHH---hccc-chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhhhhhhc------
Confidence 000000000 0000 000111122221 111222222223346788999999999886 45555566653
Q ss_pred ccccCcccEEEEeccCCCCCCc--hhhccCCCcEEEEeccccchhh
Q 048126 720 ARGFHSLHTVKVGFCFKLKDLT--WLVFAPSLKSIVVLSCCNMEQI 763 (863)
Q Consensus 720 ~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i 763 (863)
....+++|.|..+ +++.+. .+..+..|+.|+|.+ +.|+.+
T Consensus 296 --~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~ 337 (498)
T KOG4237|consen 296 --GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTV 337 (498)
T ss_pred --chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEE
Confidence 3677888888875 555543 345677888888887 455554
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.21 E-value=7.9e-11 Score=120.98 Aligned_cols=195 Identities=19% Similarity=0.226 Sum_probs=103.1
Q ss_pred ccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHH---------H
Q 048126 128 TVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQE---------K 198 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~---------~ 198 (863)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++++.+.. . ...+ .++|+...+......+.. .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 68999999999999987777899999999999999999999987 2 1122 344554444432222111 1
Q ss_pred HHHHhCCCCcc-----c---cCCChhHHHHHHHHHhc--cCcEEEEEeccCCcc-ccc-------cc---cCCCCCCCCC
Q 048126 199 IGRRIGFLDES-----W---KNGSLEDKASDILRILS--KKKFLLLLDDIWERV-DLT-------KV---GVPFPDPENK 257 (863)
Q Consensus 199 i~~~l~~~~~~-----~---~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~-------~~---~~~l~~~~~g 257 (863)
+.+.++...+. . ...........+.+.+. +++.+||+||+.... ... .+ ........+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 11112110000 0 01112233334444443 356999999997655 111 11 1112223334
Q ss_pred cEEEEecCchhhhhc--------ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 258 SKIVFTTRFLEICGA--------MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 258 s~IivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
+ +|+++.+..+... .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 158 ~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 S-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp E-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred e-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4 4444444443322 2223458999999999999999876543 111 22355679999999999998864
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=3.8e-11 Score=129.82 Aligned_cols=136 Identities=22% Similarity=0.200 Sum_probs=62.0
Q ss_pred CCCccceEEccCCccccc----cchhhhcCCCccEEEccCCCcc------ccCCccccccCCCCeEEccCCCcc-ccchh
Q 048126 514 TCPHLLSLFLSDNSLKMI----AGDFFQFMPSLRVFNMSNNHLL------WKLPSGISTLVSLEHLDLSGTAIT-HLPIE 582 (863)
Q Consensus 514 ~~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~------~~lp~~i~~l~~L~~L~L~~~~l~-~lp~~ 582 (863)
.+.+|+.|++++|.++.. ....+...+.|+.|+++++... ..++..+..+++|++|++++|.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 344466666666654321 1112444555666666665322 112334445556666666665554 23333
Q ss_pred hhcCCC---CCEEecCCccccCC-----CcHHHhhcC-CCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcC
Q 048126 583 LQKLVN---LKCLNLEYMYNLNQ-----FPRLVMSAF-SKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKS 651 (863)
Q Consensus 583 ~~~l~~---L~~L~l~~~~~l~~-----lp~~~~~~L-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 651 (863)
+..+.+ |++|++++|. +.. +... +..+ ++|+.|++.+|.+...........+..+++|+.|+++.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 333333 6666665552 221 1111 2333 5555666555554432222233344444555555554443
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.14 E-value=1.7e-08 Score=111.17 Aligned_cols=296 Identities=16% Similarity=0.145 Sum_probs=169.6
Q ss_pred CCccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC---CEEEEEEeCCccCHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF---DVVIWVVVSKDLQLEKIQEK 198 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~ 198 (863)
+.++||+.++++|..++.+ .....+.|+|++|+|||++++.+++...+..... -..+||.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999863 3456789999999999999999998762111111 14578888777778889999
Q ss_pred HHHHhC---CCCccccCCChhHHHHHHHHHhc--cCcEEEEEeccCCcc-c----cccccCC--CCC-CCCCcEEEEecC
Q 048126 199 IGRRIG---FLDESWKNGSLEDKASDILRILS--KKKFLLLLDDIWERV-D----LTKVGVP--FPD-PENKSKIVFTTR 265 (863)
Q Consensus 199 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~----~~~~~~~--l~~-~~~gs~IivTtR 265 (863)
|+.++. ...+. ...+..+....+.+.+. +++++||||+++... . +..+... ... ......+|.+|.
T Consensus 95 i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 32211 22244555566666664 467899999998652 1 1122111 011 112334455554
Q ss_pred chhhhhccc-------ccceEeecCCChHHHHHHHHHHhccc--ccCCCCChHHHHHHHHHHhCCchhHHHHHHHH-h--
Q 048126 266 FLEICGAMK-------AHEFLKVECLGPEDAWRLFRENLRRD--VLDNHPDIPELARSVAKEYAGLPLALITIGRA-M-- 333 (863)
Q Consensus 266 ~~~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~-l-- 333 (863)
.......+. ....+.+++++.++..+++..++... ....+++..+...+++....|.|-.+..+... .
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 433211110 12467899999999999999886421 11122333344555677777888544332211 1
Q ss_pred --c-C--CCChhHHHHHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhccC--CCCccccHHhHHHHH--
Q 048126 334 --T-C--KKTTQEWHHAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCGLF--PEDYRIRKSELIDCW-- 404 (863)
Q Consensus 334 --~-~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~w-- 404 (863)
. + .-+.+..+.+.+.+.. ....-++..||. +.|..+..++.. -.+..+...++...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 1344455544444321 222345668887 555433333211 133345555555422
Q ss_pred HhcCCCCCcccchhhhhHHHHHHHHHHhccccccc
Q 048126 405 IGEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEE 439 (863)
Q Consensus 405 ~a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 439 (863)
+++. +.- .+-.......+++.|...+++....
T Consensus 320 ~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCED-IGV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 1221 110 1223466778899999999998764
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=6.4e-11 Score=128.04 Aligned_cols=235 Identities=21% Similarity=0.153 Sum_probs=146.5
Q ss_pred cccceEEEEeccccccc-----cc-cCCCCCccceEEccCCcccccc------chhhhcCCCccEEEccCCCccccCCcc
Q 048126 492 NWRNVRRMSLMKNKIEN-----LS-ETPTCPHLLSLFLSDNSLKMIA------GDFFQFMPSLRVFNMSNNHLLWKLPSG 559 (863)
Q Consensus 492 ~~~~lr~L~l~~~~~~~-----l~-~~~~~~~L~~L~l~~~~l~~~~------~~~~~~l~~L~~L~L~~~~~~~~lp~~ 559 (863)
.+..++.+.+.++.+.. ++ .....++|+.|+++++.+...+ ...+..+++|++|++++|.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 34458888888887632 22 2356778999999988665211 234677889999999999665556666
Q ss_pred ccccCC---CCeEEccCCCcc-----ccchhhhcC-CCCCEEecCCccccC-----CCcHHHhhcCCCCcEEEeeccccc
Q 048126 560 ISTLVS---LEHLDLSGTAIT-----HLPIELQKL-VNLKCLNLEYMYNLN-----QFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 560 i~~l~~---L~~L~L~~~~l~-----~lp~~~~~l-~~L~~L~l~~~~~l~-----~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
+..+.+ |++|++++|.+. .++..+..+ ++|+.|++++|. ++ .++. .+..+++|++|++.+|...
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAK-ALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHH-HHHhCCCcCEEECcCCCCc
Confidence 666665 999999999876 344566777 899999999984 34 2232 2567789999999988776
Q ss_pred cCchhhHHHHHcCCccCceEEEEEcChHHHH--HHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcc
Q 048126 626 FGGHQFLVEELMGMKHLMALTITLKSWEALQ--ELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKH 703 (863)
Q Consensus 626 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 703 (863)
..........+..+++|+.|+++.+...... .+.. .+..+++|++|++++|..
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------------------------~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE-------------------------TLASLKSLEVLNLGDNNL 233 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-------------------------HhcccCCCCEEecCCCcC
Confidence 4322334455666778888888876543221 1111 133346677777776542
Q ss_pred cccceeccccccccccccccCcccEEEEeccCCCCCC------chhhccCCCcEEEEeccc
Q 048126 704 LEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDL------TWLVFAPSLKSIVVLSCC 758 (863)
Q Consensus 704 ~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~l~~~~ 758 (863)
++..+..+.. ... ...+.|++|++++| .++.. ..+..+++|++|+++++.
T Consensus 234 -~~~~~~~l~~--~~~-~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 234 -TDAGAAALAS--ALL-SPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred -chHHHHHHHH--HHh-ccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 2111111000 000 01367777877777 33311 123345778888887754
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.09 E-value=7.4e-12 Score=128.45 Aligned_cols=294 Identities=18% Similarity=0.160 Sum_probs=165.7
Q ss_pred CccceEEccCCccccc--cchhhhcCCCccEEEccCCCcccc--CCccccccCCCCeEEccCC-Cccc--cchhhhcCCC
Q 048126 516 PHLLSLFLSDNSLKMI--AGDFFQFMPSLRVFNMSNNHLLWK--LPSGISTLVSLEHLDLSGT-AITH--LPIELQKLVN 588 (863)
Q Consensus 516 ~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~L~~~-~l~~--lp~~~~~l~~ 588 (863)
..|+.|.+.|+.-... ...+-.+++++..|.+.+|..++. +-..-..+.+|++|++..| .|+. |-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4577888888732111 123456788888888888864432 1222246778888888886 5652 3334556788
Q ss_pred CCEEecCCccccCC--CcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhh
Q 048126 589 LKCLNLEYMYNLNQ--FPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQR 666 (863)
Q Consensus 589 L~~L~l~~~~~l~~--lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ 666 (863)
|.+|++++|+.+.. +.. ...++.+|+.+...+|.-... ......=.....+-++++..+..-.-..+........
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 88888888865544 111 245566666666656543321 1111111111223333322222111111222223344
Q ss_pred cceeeeeccccCCCcccccchh-hcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCC--chh
Q 048126 667 CTQSLFLRCFNDSKSLDIFCLA-CLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDL--TWL 743 (863)
Q Consensus 667 ~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l 743 (863)
.|+.|..++|...+...+..+. ..++|+.|.+.+|....+......+ .+.+.|+.+++.+|....+- ..+
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-------rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-------RNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-------cCChhhhhhcccccceehhhhHhhh
Confidence 6777777777766655544443 3578888888888766544333332 45777888888887544332 112
Q ss_pred -hccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccC-CCCCCCcceEeecCCCCC
Q 048126 744 -VFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWE-ALAFPNLKEIRVEGCPKL 821 (863)
Q Consensus 744 -~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L 821 (863)
-++|.|+.|.+++|..+++.+...+ .....+...|+.|.+.+||.+++-..+ ...+++|+.+++.+|...
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l--------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHL--------SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhh--------hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 2567888888888877666522100 123445667778888888776653332 223677888888887777
Q ss_pred CCCCCC
Q 048126 822 FKLPLD 827 (863)
Q Consensus 822 ~~lp~~ 827 (863)
++-|..
T Consensus 440 tk~~i~ 445 (483)
T KOG4341|consen 440 TKEAIS 445 (483)
T ss_pred hhhhhH
Confidence 765543
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=2e-11 Score=124.28 Aligned_cols=234 Identities=18% Similarity=0.140 Sum_probs=159.0
Q ss_pred ccccccceEEEEeccccccccc--cCCCCCccceEEccC-CccccccchhhhcCCCccEEEccCCCccccCCccccccCC
Q 048126 489 EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSD-NSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (863)
.+..+.+||+|++++|.|+.+. .+..++.|.+|-+-+ |.|+.+|.+.|.++..|+-|.+.-|++.-...+.+..|++
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 4677889999999999998773 357777877777766 8999999999999999999999999665556678899999
Q ss_pred CCeEEccCCCccccch-hhhcCCCCCEEecCCcccc------------CCCcHHHhhcCCCCcEEEeeccccccC-----
Q 048126 566 LEHLDLSGTAITHLPI-ELQKLVNLKCLNLEYMYNL------------NQFPRLVMSAFSKLQVLRILKSNVLFG----- 627 (863)
Q Consensus 566 L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l------------~~lp~~~~~~L~~L~~L~l~~~~~~~~----- 627 (863)
|..|.+..|.+..++. .+..+..++++.+..++.+ ...|.. .+......-..+....+...
T Consensus 166 l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf 244 (498)
T KOG4237|consen 166 LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKF 244 (498)
T ss_pred cchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhh
Confidence 9999999999999988 6889999999988776411 111111 12221111111111000000
Q ss_pred -----------------chhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhc
Q 048126 628 -----------------GHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACL 690 (863)
Q Consensus 628 -----------------~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 690 (863)
.......-++.|++|++|+++.+..+.+..-... -...++.|.|... .+..+.-..+..+
T Consensus 245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe--~~a~l~eL~L~~N-~l~~v~~~~f~~l 321 (498)
T KOG4237|consen 245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE--GAAELQELYLTRN-KLEFVSSGMFQGL 321 (498)
T ss_pred hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc--chhhhhhhhcCcc-hHHHHHHHhhhcc
Confidence 0122233478899999999998887766543221 2246777777663 2344443457778
Q ss_pred CCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccC
Q 048126 691 HNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCF 735 (863)
Q Consensus 691 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 735 (863)
++|+.|+++++.... +.+..+. .+.+|.+|.|-.++
T Consensus 322 s~L~tL~L~~N~it~-~~~~aF~--------~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 322 SGLKTLSLYDNQITT-VAPGAFQ--------TLFSLSTLNLLSNP 357 (498)
T ss_pred ccceeeeecCCeeEE-Eeccccc--------ccceeeeeehccCc
Confidence 999999999975443 3444332 36778888886543
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.02 E-value=1.5e-08 Score=114.14 Aligned_cols=299 Identities=17% Similarity=0.204 Sum_probs=187.0
Q ss_pred cCCCCCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHH
Q 048126 122 QRPCEPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIG 200 (863)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~ 200 (863)
|.+..+.|-|..-++.+.+ ..+.+.+.|..++|.||||++.+..... ..=..+.|.+++.. .++..+...++
T Consensus 15 P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHH
Confidence 3334556777655544433 2478999999999999999999998743 23346899998765 46788888888
Q ss_pred HHhCCCCccc-----------cCCChhHHHHHHHHHhc--cCcEEEEEeccCCccc--c-ccccCCCCCCCCCcEEEEec
Q 048126 201 RRIGFLDESW-----------KNGSLEDKASDILRILS--KKKFLLLLDDIWERVD--L-TKVGVPFPDPENKSKIVFTT 264 (863)
Q Consensus 201 ~~l~~~~~~~-----------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~--~-~~~~~~l~~~~~gs~IivTt 264 (863)
..++...+.. ...+...+.+.+..-+. .++..+||||-.-..+ . ..+.-.+.....+-..||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 8886333211 12233344455554444 3689999999765422 1 12222222344578899999
Q ss_pred Cchhhhhc--cc-ccceEee----cCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCC
Q 048126 265 RFLEICGA--MK-AHEFLKV----ECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKK 337 (863)
Q Consensus 265 R~~~v~~~--~~-~~~~~~l----~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~ 337 (863)
|+..-... +. .+..+++ =.|+.+|+.++|....+.. --+.-.+.+.+..+|=+-|+..++=.++++.
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRNNT 241 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccCCC
Confidence 98643211 11 1122222 3688999999998765322 2244578899999999999988887777434
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCcchhh-hhhhhhcCCCCchhhHHHHhHhccCCCCccccHHhHHHHHHhcCCCCCcccc
Q 048126 338 TTQEWHHAIQILRRSSSEFPGMGKEVY-PLLKFSYDSLPDDTIRSCFLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRS 416 (863)
Q Consensus 338 ~~~~w~~~l~~l~~~~~~~~~~~~~~~-~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 416 (863)
+.+.--..++ +...-+. -...=-++.||+ .+|..++.||+++.- -+.|+..-
T Consensus 242 ~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~L------------ 294 (894)
T COG2909 242 SAEQSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNAL------------ 294 (894)
T ss_pred cHHHHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHH------------
Confidence 3332222111 1111111 122335678999 799999999998632 13333321
Q ss_pred hhhhhHHHHHHHHHHhccccccccccccccccceEEeehhHHHHHHHHHH
Q 048126 417 GAYNEGYYIIGILLHACLLEEEEGDIAEEKSGEHVVKMHDVIRDMVLWIA 466 (863)
Q Consensus 417 ~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdli~d~a~~~~ 466 (863)
.-++.+...+++|.+++|+-..- +.....|+.|.++.||.+.--
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~L------dd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRL------DDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeee------cCCCceeehhHHHHHHHHhhh
Confidence 22355677899999999986432 112678999999999977543
No 33
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=1.9e-09 Score=104.08 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=90.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCC----CCEEEEEEeCCccCHH---HHHHHHHHHhCCCCccccCCChhHHHH
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPND----FDVVIWVVVSKDLQLE---KIQEKIGRRIGFLDESWKNGSLEDKAS 220 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 220 (863)
+++.|+|.+|+||||+++.++..... ... +...+|+......... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 58899999999999999999988732 222 4566777766544332 44444444443211 11111
Q ss_pred HHHHH-hccCcEEEEEeccCCccc---------ccc-ccCCCCC-CCCCcEEEEecCchhh---hhcccccceEeecCCC
Q 048126 221 DILRI-LSKKKFLLLLDDIWERVD---------LTK-VGVPFPD-PENKSKIVFTTRFLEI---CGAMKAHEFLKVECLG 285 (863)
Q Consensus 221 ~l~~~-l~~kr~LlVlDdv~~~~~---------~~~-~~~~l~~-~~~gs~IivTtR~~~v---~~~~~~~~~~~l~~L~ 285 (863)
.+... .+.++++||+|++++... +.. +...++. ..++.+|+||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 246899999999976432 111 1111222 2468999999999766 3333444678999999
Q ss_pred hHHHHHHHHHHhc
Q 048126 286 PEDAWRLFRENLR 298 (863)
Q Consensus 286 ~~e~~~lf~~~~~ 298 (863)
+++..+++.+.+.
T Consensus 152 ~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 152 EEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987753
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.01 E-value=1.9e-08 Score=107.54 Aligned_cols=265 Identities=15% Similarity=0.102 Sum_probs=149.8
Q ss_pred CCccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
.+|||++..++.+..++.. .....+.++|++|+|||+||+.+++.. ...+ ..+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHH
Confidence 4589999999999888852 345668899999999999999999987 2222 12222111112222 2222
Q ss_pred HHhCCCC----ccccCCChhHHHHHHHHHhccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhhhccc--
Q 048126 201 RRIGFLD----ESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEICGAMK-- 274 (863)
Q Consensus 201 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~-- 274 (863)
..++... ++....+ ......+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+.....
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 3332211 0001011 1233446666667777777877655443332 122 2455667777654432211
Q ss_pred ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhc------CC--CChhHHHHHH
Q 048126 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMT------CK--KTTQEWHHAI 346 (863)
Q Consensus 275 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~------~~--~~~~~w~~~l 346 (863)
....+.+++++.++..+++.+.+..... .--.+....|++.|+|.|-.+..++..+. +. .+.+..+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~--- 223 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL--- 223 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH---
Confidence 1346789999999999999988764321 12245678999999999977655554321 00 0111111
Q ss_pred HHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHh-HhccCCCCccccHHhHHHHHHhcCCCCCcccchhhhhHHHH
Q 048126 347 QILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFL-YCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYI 425 (863)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 425 (863)
.....+..+|..++. +.+..+. ....++.+ .+..+.+.... | .....+...
T Consensus 224 ---------------~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~ 275 (305)
T TIGR00635 224 ---------------KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDV 275 (305)
T ss_pred ---------------HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHh
Confidence 222234556777877 5555444 44555433 33333333221 1 112345555
Q ss_pred HH-HHHHhcccccc
Q 048126 426 IG-ILLHACLLEEE 438 (863)
Q Consensus 426 ~~-~L~~~sll~~~ 438 (863)
++ .|++++|++..
T Consensus 276 ~e~~Li~~~li~~~ 289 (305)
T TIGR00635 276 YEPYLLQIGFLQRT 289 (305)
T ss_pred hhHHHHHcCCcccC
Confidence 77 69999999754
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.97 E-value=3.8e-08 Score=105.90 Aligned_cols=272 Identities=14% Similarity=0.117 Sum_probs=148.0
Q ss_pred CCccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
.+|||++..++.+..++.. .....+.|+|++|+||||+|+.+++.. . ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHH
Confidence 5689999999998877742 345678899999999999999999987 2 222 1222111 11122223333
Q ss_pred HHhCCCC----ccccCCChhHHHHHHHHHhccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhhhccc--
Q 048126 201 RRIGFLD----ESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEICGAMK-- 274 (863)
Q Consensus 201 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~-- 274 (863)
..+.... ++....+ ....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..|||...+.....
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHh
Confidence 3332111 0000000 1122334555556666667766544322211 111 2455667777544432211
Q ss_pred ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 048126 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKKTTQEWHHAIQILRRSSS 354 (863)
Q Consensus 275 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~ 354 (863)
....+.+++++.++..+++.+.+...... --.+.+..|++.|+|.|-.+..+...+. .|... ... .
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~----~~~-~ 236 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVE---IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQV----KGD-G 236 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHH----cCC-C
Confidence 12468899999999999999887754322 2246789999999999976555554332 11110 000 0
Q ss_pred CCC-CCcchhhhhhhhhcCCCCchhhHHHHh-HhccCCCCccccHHhHHHHHHhcCCCCCcccchhhhhHHHHHH-HHHH
Q 048126 355 EFP-GMGKEVYPLLKFSYDSLPDDTIRSCFL-YCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYIIG-ILLH 431 (863)
Q Consensus 355 ~~~-~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~-~L~~ 431 (863)
.+. ..-......+...+..|+. ..+..+. ....|+.+ .+..+.+.... ......++..++ .|++
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEERDTIEDVYEPYLIQ 303 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCCcchHHHHhhHHHHH
Confidence 000 0001233445566677776 4455443 55566654 34444443221 111233444466 8899
Q ss_pred hcccccc
Q 048126 432 ACLLEEE 438 (863)
Q Consensus 432 ~sll~~~ 438 (863)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 9998754
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=8.9e-10 Score=104.62 Aligned_cols=101 Identities=30% Similarity=0.429 Sum_probs=21.8
Q ss_pred cceEEEEeccccccccccCC-CCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccc-cccCCCCeEEc
Q 048126 494 RNVRRMSLMKNKIENLSETP-TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGI-STLVSLEHLDL 571 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~l~~L~~L~L 571 (863)
.+++.|++++|.++.+.... .+.+|+.|++++|.++.+.. +..+++|++|++++| .+..++..+ ..+++|+.|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEEC
Confidence 34455555555554444433 34455555555555444432 444555555555555 222333222 23455555555
Q ss_pred cCCCccccc--hhhhcCCCCCEEecCCc
Q 048126 572 SGTAITHLP--IELQKLVNLKCLNLEYM 597 (863)
Q Consensus 572 ~~~~l~~lp--~~~~~l~~L~~L~l~~~ 597 (863)
++|+|..+- ..+..+++|+.|++.+|
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 555444321 12334444555555444
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.93 E-value=4.8e-11 Score=122.59 Aligned_cols=298 Identities=16% Similarity=0.097 Sum_probs=175.4
Q ss_pred ceEEEEecccccccccc----CCCCCccceEEccCCc-ccccc-chhhhcCCCccEEEccCCCcccc--CCccccccCCC
Q 048126 495 NVRRMSLMKNKIENLSE----TPTCPHLLSLFLSDNS-LKMIA-GDFFQFMPSLRVFNMSNNHLLWK--LPSGISTLVSL 566 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~-l~~~~-~~~~~~l~~L~~L~L~~~~~~~~--lp~~i~~l~~L 566 (863)
.++.|++.++.-..... ..+|++++.|.+.+|. ++... .++-..++.|++|+|..|..++. +-.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56777777664433222 2678888888888883 33221 22235678888888888654433 22234567888
Q ss_pred CeEEccCC-Cccc--cchhhhcCCCCCEEecCCccccCCCcHHHhh----cCCCCcEEEeeccccccCchhhHHHHHcCC
Q 048126 567 EHLDLSGT-AITH--LPIELQKLVNLKCLNLEYMYNLNQFPRLVMS----AFSKLQVLRILKSNVLFGGHQFLVEELMGM 639 (863)
Q Consensus 567 ~~L~L~~~-~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~----~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L 639 (863)
.||++++| .|+. +-.-...+++|+.+.+++| .+++...+. .+.-+-.+++.+|+..++. .....-..+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC---~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~--~~~~i~~~c 293 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC---LELELEALLKAAAYCLEILKLNLQHCNQLTDE--DLWLIACGC 293 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc---ccccHHHHHHHhccChHhhccchhhhccccch--HHHHHhhhh
Confidence 88888888 5553 3334556667777777777 344443332 2334555666677666552 222223345
Q ss_pred ccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchh-hcCCCceEEEcCCcccccceeccccccccc
Q 048126 640 KHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLA-CLHNLNKLYVAGRKHLEDFQMTVQRSSVNQ 718 (863)
Q Consensus 640 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~ 718 (863)
..|+.|..+.+....-..+........+|+.|.+..|...+......+. +.+.|+.+++.+|....+. ... .
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~-----s 366 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLA-----S 366 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHh-----h
Confidence 6677777664443221222222223358888888887765544433332 3578888888887665432 111 1
Q ss_pred cccccCcccEEEEeccCCCCCCc--h----hhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccC
Q 048126 719 LARGFHSLHTVKVGFCFKLKDLT--W----LVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLE 792 (863)
Q Consensus 719 ~~~~l~~L~~L~L~~c~~l~~l~--~----l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 792 (863)
...+++.|+.|.|++|..+++.. . -..+..|..|.+++|+.+++-.. .....+++|+.+.+.
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L------------e~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL------------EHLSICRNLERIELI 434 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH------------HHHhhCcccceeeee
Confidence 12467888888888887665541 1 12457788888888887766521 235567788888888
Q ss_pred CCcccccccc--CCCCCCCcceEeec
Q 048126 793 NLRNLCCINW--EALAFPNLKEIRVE 816 (863)
Q Consensus 793 ~~~~L~~i~~--~~~~~p~L~~L~i~ 816 (863)
+|.....-+. ....+|+++...+.
T Consensus 435 ~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 435 DCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred chhhhhhhhhHHHHhhCccceehhhc
Confidence 8877665333 22346666655443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.4e-09 Score=103.38 Aligned_cols=141 Identities=26% Similarity=0.329 Sum_probs=55.1
Q ss_pred ccccccccccCCCCCccceEEccCCccccccchhhh-cCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccc
Q 048126 502 MKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQ-FMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLP 580 (863)
Q Consensus 502 ~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp 580 (863)
..+.+...+...++.+++.|+|.+|.++.+.. ++ .+.+|++|+|++| .+..++ .+..|++|++|++++|.|+.++
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccc
Confidence 34556666777788889999999999887753 44 5789999999999 555665 6788999999999999999997
Q ss_pred hhh-hcCCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEE
Q 048126 581 IEL-QKLVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTIT 648 (863)
Q Consensus 581 ~~~-~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 648 (863)
..+ ..+++|++|++++| .+..+.. ..++.+++|+.|++.+|++... ...-..-+..+++|+.|+-.
T Consensus 81 ~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 766 46899999999998 4444432 1267899999999999988654 23345556778888888754
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.78 E-value=6.2e-08 Score=98.19 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=93.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
..+.+.++|+.|+|||+||+.+++... .....+.|+++.... ..... +.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~~-----------------------~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSPA-----------------------VLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhHH-----------------------HHhh
Confidence 345789999999999999999999872 223345677654210 00001 1111
Q ss_pred hccCcEEEEEeccCCc---ccccc-ccCCCCC-CCCCcEEEE-ecCc---------hhhhhcccccceEeecCCChHHHH
Q 048126 226 LSKKKFLLLLDDIWER---VDLTK-VGVPFPD-PENKSKIVF-TTRF---------LEICGAMKAHEFLKVECLGPEDAW 290 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~---~~~~~-~~~~l~~-~~~gs~Iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~ 290 (863)
++ +.-+||+||+|.. ..|.. +...+.. ...|..+|| |++. +.+...+.....++++++++++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 21 2348999999863 33432 2221221 123555554 4443 345555566678899999999999
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 291 RLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 291 ~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
+++++.+...... --+++..-|++.+.|-.-++..+-
T Consensus 168 ~iL~~~a~~~~l~---l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 168 IVLQRNAYQRGIE---LSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHH
Confidence 9999988754322 225667888888887665554433
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=1.4e-07 Score=112.81 Aligned_cols=266 Identities=14% Similarity=0.155 Sum_probs=153.7
Q ss_pred CccchhHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC---HHHHHHHHH
Q 048126 127 PTVGLESMFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ---LEKIQEKIG 200 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~---~~~~~~~i~ 200 (863)
+++||+.+++.|...+.. +.-.++.+.|..|||||+|+++|.....+.+..|-...+-....+.. ..+..++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 368999999999998864 45669999999999999999999998843322222111111222221 223344444
Q ss_pred HHh-------------------CCCCcc------------------c--cCCChhHH-----HHHHHHHhc-cCcEEEEE
Q 048126 201 RRI-------------------GFLDES------------------W--KNGSLEDK-----ASDILRILS-KKKFLLLL 235 (863)
Q Consensus 201 ~~l-------------------~~~~~~------------------~--~~~~~~~~-----~~~l~~~l~-~kr~LlVl 235 (863)
.++ +...+. . .......+ ...+..+.. .++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 433 111100 0 00011111 122223333 46999999
Q ss_pred eccCC-ccc-c---ccccCCCCC-CCCCcEE--EEecCch--hhhhcccccceEeecCCChHHHHHHHHHHhcccccCCC
Q 048126 236 DDIWE-RVD-L---TKVGVPFPD-PENKSKI--VFTTRFL--EICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNH 305 (863)
Q Consensus 236 Ddv~~-~~~-~---~~~~~~l~~-~~~gs~I--ivTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~ 305 (863)
||+.- ... + ..+.....- .-....| +.|.+.. .+-........+.|.||+..+...+.....+...
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 99942 211 1 111111100 0001122 2233322 1222223446799999999999999998886532
Q ss_pred CChHHHHHHHHHHhCCchhHHHHHHHHhcCC------CChhHHHHHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhh
Q 048126 306 PDIPELARSVAKEYAGLPLALITIGRAMTCK------KTTQEWHHAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTI 379 (863)
Q Consensus 306 ~~~~~~~~~i~~~c~glPlai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~ 379 (863)
....+....|+++..|+|+.+..+-..+... .+...|+.-...+.. .+..+.+...+..-.+.||. ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCH-HH
Confidence 3345678999999999999999998888752 355556543332221 11223466678888999999 78
Q ss_pred HHHHhHhccCCCCccccHHhHHHHH
Q 048126 380 RSCFLYCGLFPEDYRIRKSELIDCW 404 (863)
Q Consensus 380 k~cfl~~~~fp~~~~i~~~~li~~w 404 (863)
++..-..|++-.. ++.+.|...+
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~ 333 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHH
Confidence 8888888887543 4444544433
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.5e-09 Score=109.76 Aligned_cols=208 Identities=19% Similarity=0.215 Sum_probs=113.1
Q ss_pred CCCCccceEEccCCccccccc-hhhhcCCCccEEEccCCCccc---cCCccccccCCCCeEEccCCCccccchh--hhcC
Q 048126 513 PTCPHLLSLFLSDNSLKMIAG-DFFQFMPSLRVFNMSNNHLLW---KLPSGISTLVSLEHLDLSGTAITHLPIE--LQKL 586 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~~~---~lp~~i~~l~~L~~L~L~~~~l~~lp~~--~~~l 586 (863)
+++++|+.+.|.++.+...+. .....|++++.|||++| .+. .+-.-+..|++|+.|+|+.|++...-.+ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 567788888888776654442 34667888888888887 332 2334456777888888887766532111 1244
Q ss_pred CCCCEEecCCccccCCC-cHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhh
Q 048126 587 VNLKCLNLEYMYNLNQF-PRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQ 665 (863)
Q Consensus 587 ~~L~~L~l~~~~~l~~l-p~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~ 665 (863)
..|+.|.++.| .++.- -..+...+++|..|++..|... .... ......
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~----------------------------~~~~--~~~~i~ 245 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEII----------------------------LIKA--TSTKIL 245 (505)
T ss_pred hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccccc----------------------------ceec--chhhhh
Confidence 55666666666 22210 0112334555555555554311 0000 111222
Q ss_pred hcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccce-eccccccccccccccCcccEEEEeccCC--CCCCch
Q 048126 666 RCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQ-MTVQRSSVNQLARGFHSLHTVKVGFCFK--LKDLTW 742 (863)
Q Consensus 666 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~l~~ 742 (863)
..|+.|+|++.+............++.|+.|+++.|.. .++. ++.. .......|++|++|++..++. ..++..
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi-~si~~~d~~---s~~kt~~f~kL~~L~i~~N~I~~w~sl~~ 321 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI-ASIAEPDVE---SLDKTHTFPKLEYLNISENNIRDWRSLNH 321 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCc-chhcCCCcc---chhhhcccccceeeecccCccccccccch
Confidence 35666666665555554444556677788887776543 2221 1110 011124588888888888743 333444
Q ss_pred hhccCCCcEEEEec
Q 048126 743 LVFAPSLKSIVVLS 756 (863)
Q Consensus 743 l~~l~~L~~L~l~~ 756 (863)
+..+++|+.|.+..
T Consensus 322 l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 322 LRTLENLKHLRITL 335 (505)
T ss_pred hhccchhhhhhccc
Confidence 44567777776554
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=1.5e-07 Score=97.43 Aligned_cols=170 Identities=21% Similarity=0.212 Sum_probs=104.6
Q ss_pred CccchhHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 048126 127 PTVGLESMF---DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 127 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 203 (863)
++||-+.-+ .-|.+++..+.+.-..+||++|+||||||+.++... ...| ..+|...+-.+-++.+++.-
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i~e~a 96 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREIIEEA 96 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHHHHHH
Confidence 355554433 234455556788888899999999999999999977 4444 33333322222222222211
Q ss_pred CCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEE--ecCchhh---hhccccc
Q 048126 204 GFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVF--TTRFLEI---CGAMKAH 276 (863)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv--TtR~~~v---~~~~~~~ 276 (863)
-.....+++.+|++|.|+.- .+-+.+ +|.-..|.-|+| ||.|+.. .....-.
T Consensus 97 ------------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 97 ------------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred ------------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 11233478999999999863 233333 455567877776 7777543 2223345
Q ss_pred ceEeecCCChHHHHHHHHHHhcccccC---CCCCh-HHHHHHHHHHhCCchhH
Q 048126 277 EFLKVECLGPEDAWRLFRENLRRDVLD---NHPDI-PELARSVAKEYAGLPLA 325 (863)
Q Consensus 277 ~~~~l~~L~~~e~~~lf~~~~~~~~~~---~~~~~-~~~~~~i~~~c~glPla 325 (863)
.++.+++|+.++-.+++.+.+...... ....+ ++...-++..++|---+
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 689999999999999999854332211 11223 34677788888886543
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=6.4e-10 Score=118.57 Aligned_cols=146 Identities=29% Similarity=0.375 Sum_probs=75.4
Q ss_pred EEEEecccccccccc-CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCC
Q 048126 497 RRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575 (863)
Q Consensus 497 r~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (863)
..+.+..|.+..++. ..++..|.+|+|+.|.+..+|.. ++.| -|++|-+++| .++.+|..++.+.+|..||.+.|.
T Consensus 101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~l-pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 101 ESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDL-PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred HHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcC-cceeEEEecC-ccccCCcccccchhHHHhhhhhhh
Confidence 333344444433322 24455555555555555555544 2222 3555555555 344555555555555556666665
Q ss_pred ccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChH
Q 048126 576 ITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWE 653 (863)
Q Consensus 576 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 653 (863)
+..+|..++.|.+|+.|+++.| .+..+|.. +.. -.|..|+++.|++. ..+..+.+|++|+.|.+..|...
T Consensus 178 i~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~-LpLi~lDfScNkis-----~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 178 IQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCS-LPLIRLDFSCNKIS-----YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhC-CceeeeecccCcee-----ecchhhhhhhhheeeeeccCCCC
Confidence 5556655666666666655555 34455554 332 23555555555443 24555556666666666555443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.8e-09 Score=108.74 Aligned_cols=208 Identities=16% Similarity=0.142 Sum_probs=104.9
Q ss_pred cccCCCCeEEccCCCccccch--hhhcCCCCCEEecCCccccCCCc--HHHhhcCCCCcEEEeeccccccCchhhHHHHH
Q 048126 561 STLVSLEHLDLSGTAITHLPI--ELQKLVNLKCLNLEYMYNLNQFP--RLVMSAFSKLQVLRILKSNVLFGGHQFLVEEL 636 (863)
Q Consensus 561 ~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp--~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l 636 (863)
+++.+|+...|.++.+...+. ....|++++.|||+.| .+..+- ..+...|++|+.|+++.|......+....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~--- 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT--- 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccch---
Confidence 456667777777776665553 4566677777777665 222221 12345566666666665544321000000
Q ss_pred cCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccc
Q 048126 637 MGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSV 716 (863)
Q Consensus 637 ~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 716 (863)
..++ +++.|.|+.|+-........+..+|+|+.|++.+|..+. ...
T Consensus 194 ~~l~--------------------------~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---~~~----- 239 (505)
T KOG3207|consen 194 LLLS--------------------------HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---IKA----- 239 (505)
T ss_pred hhhh--------------------------hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---eec-----
Confidence 0233 445555555443211111223446777777777764221 111
Q ss_pred cccccccCcccEEEEeccCCCCC--CchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCC
Q 048126 717 NQLARGFHSLHTVKVGFCFKLKD--LTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENL 794 (863)
Q Consensus 717 ~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 794 (863)
.+...+..|++|+|++++.+.. .+..+.||.|..|+++.|. +.++-.. ..+. ......||+|+.|.+...
T Consensus 240 -~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~--d~~s----~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 240 -TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEP--DVES----LDKTHTFPKLEYLNISEN 311 (505)
T ss_pred -chhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCC--Cccc----hhhhcccccceeeecccC
Confidence 0112356777777777643332 2456677777777777743 4444110 0000 112456788888877763
Q ss_pred cccccccc--CCCCCCCcceEee
Q 048126 795 RNLCCINW--EALAFPNLKEIRV 815 (863)
Q Consensus 795 ~~L~~i~~--~~~~~p~L~~L~i 815 (863)
+..+|+. ....+++|+.|.+
T Consensus 312 -~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 312 -NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred -ccccccccchhhccchhhhhhc
Confidence 3333332 2233566666665
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.66 E-value=3e-07 Score=102.02 Aligned_cols=177 Identities=16% Similarity=0.146 Sum_probs=107.5
Q ss_pred CCccchhHHHHH---HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFDK---VWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
+++||.+..+.. +.+++.......+.++|++|+||||+|+.+++.. ...| +.++.......-.+.+++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHHH
Confidence 468999888766 8888877777788899999999999999999876 2333 2222211111111222211
Q ss_pred hCCCCccccCCChhHHHHHHHH-HhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEE--ecCchhh--h-hccc
Q 048126 203 IGFLDESWKNGSLEDKASDILR-ILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVF--TTRFLEI--C-GAMK 274 (863)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv--TtR~~~v--~-~~~~ 274 (863)
... ...+++.+|++|+++... ..+.+...+. .|..+++ ||.+... . ....
T Consensus 84 -------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 84 -------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred -------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 111 124578899999998642 2333333322 2444444 4444321 1 1112
Q ss_pred ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHH
Q 048126 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRA 332 (863)
Q Consensus 275 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 332 (863)
....+.+.+++.++.+.++.+.+........+--.+....|++.|+|.+..+..+...
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2357899999999999999987643210100223566788999999998776554433
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.64 E-value=2.5e-07 Score=94.27 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=105.6
Q ss_pred CCcc--chhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 048126 126 EPTV--GLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 126 ~~~v--Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 203 (863)
++|+ +.+..++.+.+++.......+.|+|..|+|||+||+.+++.. .......+|++++.-.+.. ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~~~---~~----- 83 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQAD---PE----- 83 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHHhH---HH-----
Confidence 3455 345577778877655667789999999999999999999887 2233345666654321100 01
Q ss_pred CCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc---ccc-cccCCCCC-CCCCcEEEEecCchh---------h
Q 048126 204 GFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV---DLT-KVGVPFPD-PENKSKIVFTTRFLE---------I 269 (863)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~-~~~~~l~~-~~~gs~IivTtR~~~---------v 269 (863)
+.+.+.+ .-+||+||++... .|. .+...+.. ...+.++|+||+... +
T Consensus 84 ------------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 84 ------------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred ------------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 1111222 2389999997643 222 22222211 123347888887532 1
Q ss_pred hhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHH
Q 048126 270 CGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRA 332 (863)
Q Consensus 270 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 332 (863)
...+.....+++++++.++-..++...+..... +--.+..+.|++.+.|.|..+..+...
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 222222457899999999999999876533221 122456788888888988777665433
No 47
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.62 E-value=2.9e-06 Score=96.71 Aligned_cols=204 Identities=16% Similarity=0.095 Sum_probs=119.6
Q ss_pred CCccchhHHHHHHHHHhcC----C-CccEEEEEcCCCCcHHHHHHHHHhhhcCC--CCCCC--EEEEEEeCCccCHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----E-QVGIIGLYGMGGVGKTTLLTKINNKLLGA--PNDFD--VVIWVVVSKDLQLEKIQ 196 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~--~~~wv~~s~~~~~~~~~ 196 (863)
+.++||++++++|...|.. . ...++.|+|++|+|||++++.|.+..... ..... .+++|.+..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4568999999999998853 2 23578899999999999999998776211 11222 35778777777888899
Q ss_pred HHHHHHhCCCCccccCCChhHHHHHHHHHhcc---CcEEEEEeccCCccc-----cccccCCCCCCCCCcEEEE--ecCc
Q 048126 197 EKIGRRIGFLDESWKNGSLEDKASDILRILSK---KKFLLLLDDIWERVD-----LTKVGVPFPDPENKSKIVF--TTRF 266 (863)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~~~-----~~~~~~~l~~~~~gs~Iiv--TtR~ 266 (863)
..|+.++....+. ......+....+...+.. ...+||||+|+.... +-.+... +. ..+++|+| +|..
T Consensus 835 qvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~-~s~SKLiLIGISNd 911 (1164)
T PTZ00112 835 QVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PT-KINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hh-ccCCeEEEEEecCc
Confidence 9999888433221 222333445555554422 245899999975321 1111111 11 23455544 3332
Q ss_pred hh--------hhhcccccceEeecCCChHHHHHHHHHHhccccc-CCCCChHHHHHHHHHHhCCchhHHHHHHHHh
Q 048126 267 LE--------ICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVL-DNHPDIPELARSVAKEYAGLPLALITIGRAM 333 (863)
Q Consensus 267 ~~--------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 333 (863)
.+ +...++ ...+..+|++.++-.+++..++..... -.+..++-+|+.++...|-.=.|+.++-.+.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 122222 234677999999999999998764211 1112223334444444455556665554443
No 48
>PF13173 AAA_14: AAA domain
Probab=98.58 E-value=1.1e-07 Score=86.88 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=81.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL 226 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (863)
.+++.|.|+.|+||||++++++.+. . ....++|++..+......... + ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~~~------------------~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLADP------------------D-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHhhh------------------h-hHHHHHHhh
Confidence 4689999999999999999999887 2 334567776655432110000 0 223333333
Q ss_pred ccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhhhc------ccccceEeecCCChHHH
Q 048126 227 SKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEICGA------MKAHEFLKVECLGPEDA 289 (863)
Q Consensus 227 ~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 289 (863)
..++.+|++|++....+|......+.+..+..+|++|+.+...... .+....++|.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3477889999999988888776666555567899999998766422 12234679999998774
No 49
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.56 E-value=2.1e-05 Score=91.17 Aligned_cols=203 Identities=16% Similarity=0.064 Sum_probs=119.3
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC---CEEEEEEeCCc---cCHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF---DVVIWVVVSKD---LQLEKIQEKI 199 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s~~---~~~~~~~~~i 199 (863)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4589999999999888876667789999999999999999998776 222222 12335544321 1222221111
Q ss_pred ---------------HHHhCCCCcc-------------c--cCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccc
Q 048126 200 ---------------GRRIGFLDES-------------W--KNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKV 247 (863)
Q Consensus 200 ---------------~~~l~~~~~~-------------~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~ 247 (863)
+...+..... . ...=....+..+.+.++++++.++-|+.|.. ..|..+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 1111211000 0 0011123567788888899999997777653 457776
Q ss_pred cCCCCCCCCCcEEEE--ecCchhh-hhcc-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 248 GVPFPDPENKSKIVF--TTRFLEI-CGAM-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 248 ~~~l~~~~~gs~Iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
...+....+...|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+...... --.++...|++.+..-+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~---ls~eal~~L~~ys~~gR 389 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH---LAAGVEELIARYTIEGR 389 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHCCCcHH
Confidence 665655555554555 5665432 1111 112367889999999999999876542211 11344555555554445
Q ss_pred hHHHHHHHH
Q 048126 324 LALITIGRA 332 (863)
Q Consensus 324 lai~~~~~~ 332 (863)
-|+..++.+
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 666655544
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.56 E-value=4.9e-06 Score=94.31 Aligned_cols=182 Identities=18% Similarity=0.185 Sum_probs=111.0
Q ss_pred CCccchhHHHHHHHHHhcC---C-CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE---E-QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
..++|.+..++.+.+|+.. + ..+.+.|+|++|+||||+|+.+++.. .|+ ++-+..+...+... ...++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~-i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADV-IERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHH-HHHHHH
Confidence 4579999999999999864 1 26789999999999999999999987 233 33344444333222 222322
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc------cccccCCCCCCCCCcEEEEecCchh-hhh--c
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD------LTKVGVPFPDPENKSKIVFTTRFLE-ICG--A 272 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~~~~~l~~~~~gs~IivTtR~~~-v~~--~ 272 (863)
...... .....++-+||+|+++.... +..+...+. ..+..||+|+.+.. ... .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 221110 00113678999999976422 233322222 12344666664321 111 1
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcC
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTC 335 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~ 335 (863)
-.....+.+.+++.++....+.+.+....... -.+....|++.++|-.-.+......+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~ 208 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAINDLQAIAE 208 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 12235688999999999999888775443222 2467899999999977665544444443
No 51
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.7e-06 Score=92.43 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=116.3
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhc---CCCCCCCEEEEEEe-CCccCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLL---GAPNDFDVVIWVVV-SKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~F~~~~wv~~-s~~~~~~~~~~~i~ 200 (863)
.+++|-+..++.+.+++..++. +.+.++|+.|+||||+|+.++.... ....|+|...|... +....++++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 4578999999999999987654 5778999999999999999998641 12356676666552 333333342 3333
Q ss_pred HHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccC--CccccccccCCCCCCCCCcEEEEecCchhhh-hc-cccc
Q 048126 201 RRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIW--ERVDLTKVGVPFPDPENKSKIVFTTRFLEIC-GA-MKAH 276 (863)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~-~~-~~~~ 276 (863)
+.+.... ..+++-++|+|+++ +...+..+...+.....++.+|++|.+.+.. .. ....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 3332211 11344466666654 4456777776676667788899888765432 11 1223
Q ss_pred ceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 277 EFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 277 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
..+.+.++++++....+.+.+... -.+.+..++..++|.|..+...
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 578899999999988887654311 1334678899999998765443
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=5.4e-09 Score=111.65 Aligned_cols=194 Identities=24% Similarity=0.282 Sum_probs=151.6
Q ss_pred ccceEEEEecccccccccc-CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEc
Q 048126 493 WRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (863)
Q Consensus 493 ~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (863)
+......+++.|.+..+|. ...|-.|..+.|..|.+..+|.. +.++..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 3455677888888887765 36778899999999999888877 789999999999999 6678999999887 999999
Q ss_pred cCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcC
Q 048126 572 SGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKS 651 (863)
Q Consensus 572 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 651 (863)
++|+++.+|..++.+..|.+|+.+.| .+..+|.. ++.+.+|+.|.+..|.+. ..+.++..|+ |.+|++++|.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~-----~lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE-----DLPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh-----hCCHHHhCCc-eeeeecccCc
Confidence 99999999999999999999999998 67888887 889999999999888775 3677788765 8899999988
Q ss_pred hHHHHHHhhhhhhhhcceeeeeccccCCCccccc-ch-hhcCCCceEEEcCC
Q 048126 652 WEALQELLISQELQRCTQSLFLRCFNDSKSLDIF-CL-ACLHNLNKLYVAGR 701 (863)
Q Consensus 652 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l-~~~~~L~~L~l~~~ 701 (863)
...++--.. .++.|+.|.|.+++ +++.+.. +. ....-.++|++..|
T Consensus 223 is~iPv~fr---~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 ISYLPVDFR---KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecchhhh---hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 877664322 23588888888755 3333211 11 11234467777666
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=1.1e-07 Score=74.08 Aligned_cols=61 Identities=41% Similarity=0.544 Sum_probs=41.4
Q ss_pred CccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCc
Q 048126 516 PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 516 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 576 (863)
|+|++|++++|.++.+++..|.++++|++|++++|.+...-|..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777777777777777777777777744433445667777777777777653
No 54
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=2.3e-06 Score=93.16 Aligned_cols=194 Identities=12% Similarity=0.075 Sum_probs=109.2
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC-EEEEEEeCCccCHHHHHHHHH----
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD-VVIWVVVSKDLQLEKIQEKIG---- 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~---- 200 (863)
+.++|++..++.+.+++..+..+.+.++|+.|+||||+|+.+++... ...+. ..+++++++-.+. ....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQ--GKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhc--chhhhhcCcc
Confidence 56899999999999999877766788999999999999999998862 22222 2345544331100 000000
Q ss_pred --HHhCCCCccccCCChhHHHHHH-HHHh-----ccCcEEEEEeccCCccc--cccccCCCCCCCCCcEEEEecCchh-h
Q 048126 201 --RRIGFLDESWKNGSLEDKASDI-LRIL-----SKKKFLLLLDDIWERVD--LTKVGVPFPDPENKSKIVFTTRFLE-I 269 (863)
Q Consensus 201 --~~l~~~~~~~~~~~~~~~~~~l-~~~l-----~~kr~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~~-v 269 (863)
..++... . ......+....+ .... .+.+-+||+||+..... ...+...+......+++|+||.+.. +
T Consensus 91 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 91 FAHFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 0000000 0 000111112211 1111 13445899999975421 2223222222234567777775432 2
Q ss_pred hhcc-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 270 CGAM-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 270 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
.... .....+.+.+++.++...++.+.+...... --.+....+++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1111 123467889999999999998876543321 2256788899999887655443
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=9.8e-07 Score=83.07 Aligned_cols=123 Identities=23% Similarity=0.150 Sum_probs=74.8
Q ss_pred cchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCc
Q 048126 129 VGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDE 208 (863)
Q Consensus 129 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 208 (863)
+|++..++.+...+.....+.+.|+|.+|+|||++|+.+++.. . ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788899999999877667789999999999999999999987 2 222346677665543322221111100
Q ss_pred cccCCChhHHHHHHHHHhccCcEEEEEeccCCc-----cccccccCCCCC---CCCCcEEEEecCchh
Q 048126 209 SWKNGSLEDKASDILRILSKKKFLLLLDDIWER-----VDLTKVGVPFPD---PENKSKIVFTTRFLE 268 (863)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~~~~~l~~---~~~gs~IivTtR~~~ 268 (863)
............++.+||+||++.. ..+......... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999853 122222222211 135788888888653
No 56
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.48 E-value=1.6e-06 Score=87.98 Aligned_cols=172 Identities=18% Similarity=0.182 Sum_probs=108.7
Q ss_pred CccchhHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 048126 127 PTVGLESMF---DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 127 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 203 (863)
+.||.+..+ .-|.+++..+++.-+.+||++|+||||||+.+.+.. +.+- ..||..|....-..-.+.|+++-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHH
Confidence 345554433 234555566788889999999999999999999886 2221 56777776654444455555433
Q ss_pred CCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEE--ecCchhh---hhccccc
Q 048126 204 GFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVF--TTRFLEI---CGAMKAH 276 (863)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv--TtR~~~v---~~~~~~~ 276 (863)
.. ...+.++|.+|.+|.|..- .+-+. .+|.-.+|.-++| ||.++.. +......
T Consensus 214 q~-----------------~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 214 QN-----------------EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred HH-----------------HHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhcc
Confidence 21 1234578999999999753 22332 3566677876665 7877654 2233344
Q ss_pred ceEeecCCChHHHHHHHHHHhc---cccc--CCCCC----h-HHHHHHHHHHhCCch
Q 048126 277 EFLKVECLGPEDAWRLFRENLR---RDVL--DNHPD----I-PELARSVAKEYAGLP 323 (863)
Q Consensus 277 ~~~~l~~L~~~e~~~lf~~~~~---~~~~--~~~~~----~-~~~~~~i~~~c~glP 323 (863)
.++.|++|+.++-..++.+... .... ..-++ + ..+..-++..|.|--
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 6889999999999999988432 1110 11122 2 235566667777754
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=6.3e-06 Score=93.73 Aligned_cols=194 Identities=15% Similarity=0.134 Sum_probs=111.2
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
+++||.+..++.|.+++..+++ +.+.++|..|+||||+|+.+.+... -...++ +..+......+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCC-------CCCCcccHHHHHHhcCCC
Confidence 4579999999999999987664 4667999999999999999988762 111110 011111112222211000
Q ss_pred CCC---ccccCCChhHHHHHHHHH----hccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCchh-hhhc-c
Q 048126 205 FLD---ESWKNGSLEDKASDILRI----LSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFLE-ICGA-M 273 (863)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~~~-~ 273 (863)
... +.......++....+... ..++.-++|||+++... .+..+...+.......++|+||++.. +... .
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 000 000011122222111111 12455688899998653 35555444444445677777777643 2211 1
Q ss_pred cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch-hHHHHHH
Q 048126 274 KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP-LALITIG 330 (863)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 330 (863)
.-...+.++.++.++..+.+.+.+...... --.+..+.|++.++|.. -|+..+-
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223578999999999999998877543321 12456788999998865 4554433
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.3e-08 Score=98.52 Aligned_cols=81 Identities=21% Similarity=0.198 Sum_probs=35.5
Q ss_pred ccceEEccCCccccc-cchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC-Ccccc--chhhhcCCCCCEE
Q 048126 517 HLLSLFLSDNSLKMI-AGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT-AITHL--PIELQKLVNLKCL 592 (863)
Q Consensus 517 ~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~-~l~~l--p~~~~~l~~L~~L 592 (863)
.|+.|+|+...++.- -...++.|..|+.|.|+++...+.+-..|.+-.+|+.|+|++| .+++- ---+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555555443311 1223445555555555555433333334444444555555444 33321 1123444444444
Q ss_pred ecCCc
Q 048126 593 NLEYM 597 (863)
Q Consensus 593 ~l~~~ 597 (863)
++++|
T Consensus 266 NlsWc 270 (419)
T KOG2120|consen 266 NLSWC 270 (419)
T ss_pred CchHh
Confidence 44444
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.9e-08 Score=97.83 Aligned_cols=84 Identities=23% Similarity=0.250 Sum_probs=43.3
Q ss_pred CccEEEccCCCcc-ccCCccccccCCCCeEEccCCCcc-ccchhhhcCCCCCEEecCCccccCCCcHH-HhhcCCCCcEE
Q 048126 541 SLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSGTAIT-HLPIELQKLVNLKCLNLEYMYNLNQFPRL-VMSAFSKLQVL 617 (863)
Q Consensus 541 ~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~~L~~L~~L 617 (863)
.|++|||++..+. ..+..-++.+.+|+.|.|.|+.+. .+-..+.+-.+|+.|+++.|..++..... ++++++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666676666332 123334455666666666666554 33444555566666666666544433221 23445555555
Q ss_pred Eeecccc
Q 048126 618 RILKSNV 624 (863)
Q Consensus 618 ~l~~~~~ 624 (863)
+++-|..
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 5444443
No 60
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=2.7e-08 Score=97.98 Aligned_cols=128 Identities=24% Similarity=0.409 Sum_probs=67.4
Q ss_pred cccceEEEEeccccccccccC-CCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEE
Q 048126 492 NWRNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570 (863)
Q Consensus 492 ~~~~lr~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 570 (863)
.|..+..+++++|.++.+... .-.|.+|.|++++|.+..+.. +..+++|..|||++| ...++-..=.+|-|.++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 345566666666666555333 334566666666665554433 455666666666666 2323332223455555666
Q ss_pred ccCCCccccchhhhcCCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeecccc
Q 048126 571 LSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 571 L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~ 624 (863)
|++|.|..+. ++++|.+|..||+++| .+..+.. ..+++|+.|++|.+.+|.+
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 6666555553 4556666666666655 3333321 1145555666665555544
No 61
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=7.5e-08 Score=94.87 Aligned_cols=128 Identities=23% Similarity=0.255 Sum_probs=60.8
Q ss_pred CCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEEec
Q 048126 515 CPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNL 594 (863)
Q Consensus 515 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l 594 (863)
+..|+.|+|++|.++.+..+ ..-.+.+|+|++++|.+. .+. ++..|++|+.|||++|.++++-..-.+|.|.++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchhhhhhh-hhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34455555555555555443 444555555555555222 222 244555555555555555544433444555555555
Q ss_pred CCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcC
Q 048126 595 EYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKS 651 (863)
Q Consensus 595 ~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 651 (863)
++| .+..+.. +++|-+|..|++.+|++.. ......+++|+.|+.+.+..|.
T Consensus 360 a~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~---ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQN-KIETLSG--LRKLYSLVNLDLSSNQIEE---LDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhh-hHhhhhh--hHhhhhheeccccccchhh---HHHhcccccccHHHHHhhcCCC
Confidence 554 3333332 4455555555555544421 1223334445555544444443
No 62
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=3.2e-06 Score=98.05 Aligned_cols=182 Identities=16% Similarity=0.185 Sum_probs=109.6
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCCCC-------------------CCEEEEEE
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPND-------------------FDVVIWVV 185 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 185 (863)
..+||-+..++.|.+++..+++. .+.++|+.|+||||+|+.+++.... ... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 45899999999999999877665 4579999999999999999988621 111 11112221
Q ss_pred eCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEe
Q 048126 186 VSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFT 263 (863)
Q Consensus 186 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivT 263 (863)
.+....+.. .+.|.+.+. .....+++-++|+|+++.. .....+...+.......++|++
T Consensus 95 Aas~~kVDd-IReLie~v~------------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 95 AASRTKVDD-TRELLDNVQ------------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred cccccCHHH-HHHHHHHHH------------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 111111111 122221110 0112356779999999764 3344444334333345666655
Q ss_pred cCc-hhhhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 264 TRF-LEICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 264 tR~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
|.+ ..+... ......|++++|+.++..+++.+.+..... ..-.+....|++.++|.|-.+..+.
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544 444321 122357899999999999999887654221 1224567889999999886555443
No 63
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=4.3e-07 Score=92.13 Aligned_cols=93 Identities=22% Similarity=0.187 Sum_probs=63.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc--cCHHHHHHHH-----HHHhCCCCccccCCChhHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD--LQLEKIQEKI-----GRRIGFLDESWKNGSLEDK 218 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~~~~~ 218 (863)
.-..++|+|++|+|||||++++++.. .. .+|+.++|+.+++. .++.++++.+ +.+++.+... ...-....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHHH
Confidence 45689999999999999999999998 33 48999999998777 7899999999 3333321100 00000011
Q ss_pred HHHHHH-HhccCcEEEEEeccCCc
Q 048126 219 ASDILR-ILSKKKFLLLLDDIWER 241 (863)
Q Consensus 219 ~~~l~~-~l~~kr~LlVlDdv~~~ 241 (863)
...... .-.+++.++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 111121 12479999999999753
No 64
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2e-05 Score=84.90 Aligned_cols=198 Identities=17% Similarity=0.171 Sum_probs=127.9
Q ss_pred CCccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
+.+.+|+.+++++...|.. +...-+.|+|..|+|||+.++.|.+.........+ +++|.+-...+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4478999999999988853 34445899999999999999999999843323333 789999999999999999999
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhcc--CcEEEEEeccCCcccc-----ccccCCCCCCCCCcEE--EEecCchhh---
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILSK--KKFLLLLDDIWERVDL-----TKVGVPFPDPENKSKI--VFTTRFLEI--- 269 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~-----~~~~~~l~~~~~gs~I--ivTtR~~~v--- 269 (863)
+++.... ...+..+....+.+.+.. +.+++|||+++....- -.+......+ .++| |..+-+..+
T Consensus 96 ~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 96 KLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHH
Confidence 9963221 345666777777777754 7899999999764222 1221111111 3443 333433332
Q ss_pred -----hhcccccceEeecCCChHHHHHHHHHHhccc--ccCCCCChHHHHHHHHHHhC-CchhHHHHH
Q 048126 270 -----CGAMKAHEFLKVECLGPEDAWRLFRENLRRD--VLDNHPDIPELARSVAKEYA-GLPLALITI 329 (863)
Q Consensus 270 -----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~-glPlai~~~ 329 (863)
...++.. .+..+|-+.+|-.+.+..++... ....++..-++...++..-+ -.=.|+..+
T Consensus 172 ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 172 LDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2222222 37889999999999999876432 11233344444444444444 344444443
No 65
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=6.3e-07 Score=104.62 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=76.6
Q ss_pred ccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCcc-ccchhhhcCCCCCEEecC
Q 048126 517 HLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAIT-HLPIELQKLVNLKCLNLE 595 (863)
Q Consensus 517 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~ 595 (863)
.++.|+|++|.+.+..+..++.+++|++|+|++|.+.+.+|..++.+++|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677778877776555555777888888888888666778878888888888888888776 677778888888888888
Q ss_pred CccccCCCcHHHhhcCCCCcEEEeeccc
Q 048126 596 YMYNLNQFPRLVMSAFSKLQVLRILKSN 623 (863)
Q Consensus 596 ~~~~l~~lp~~~~~~L~~L~~L~l~~~~ 623 (863)
+|.....+|..+...+.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 8755556776532223456666666554
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=8.6e-06 Score=88.72 Aligned_cols=192 Identities=15% Similarity=0.186 Sum_probs=108.6
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.++||-+..++.+.+.+..+++ +.+.++|+.|+||||+|+.+++... -..... ..++........+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 5689999999999999887654 5678999999999999999998761 111100 001111111111111100
Q ss_pred CCCccc---cCCChhHHHHHHHHHh-----ccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCch-hhhhc-
Q 048126 205 FLDESW---KNGSLEDKASDILRIL-----SKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFL-EICGA- 272 (863)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~- 272 (863)
...... .....++ ...+.+.+ .+++-++|+|+++... .+..+...+.......++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 000000 0011111 12222221 2345699999998653 3444544444444566777766543 33221
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
.+....+++.+++.++..+.+.+.+..... .--++.+..|++.++|.|-.+...
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 122357899999999999988876654321 112456788999999988654433
No 67
>PRK08727 hypothetical protein; Validated
Probab=98.41 E-value=4.3e-06 Score=84.98 Aligned_cols=168 Identities=12% Similarity=0.076 Sum_probs=97.4
Q ss_pred CCccchh-HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLE-SMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
++||+.. ..+..+...........+.|+|..|+|||+|++.+++... .....+.|+++.+ ....+.+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~~--- 86 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLRD--- 86 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHHH---
Confidence 4465433 3344444433333445799999999999999999998872 2223566776432 1111110
Q ss_pred CCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc---cccc-ccCCCCC-CCCCcEEEEecCch---------hhh
Q 048126 205 FLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV---DLTK-VGVPFPD-PENKSKIVFTTRFL---------EIC 270 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~-~~~~l~~-~~~gs~IivTtR~~---------~v~ 270 (863)
..+.+ .+.-+||+||+.... .|.. +...+.. ...|..||+|++.. ++.
T Consensus 87 -----------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 87 -----------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred -----------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 01111 133589999997432 2221 1111111 12356699999853 223
Q ss_pred hcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHH
Q 048126 271 GAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLAL 326 (863)
Q Consensus 271 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 326 (863)
..+.....+++++++.++-.+++++.+...... --++...-|++.++|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~---l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA---LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhCCCCHHHH
Confidence 333345578999999999999999876543211 22456777888887655444
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.40 E-value=1.2e-07 Score=95.94 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=39.6
Q ss_pred ccceEEEEeccccccc-----c-ccCCCCCccceEEccCCc----cccccch------hhhcCCCccEEEccCCCccccC
Q 048126 493 WRNVRRMSLMKNKIEN-----L-SETPTCPHLLSLFLSDNS----LKMIAGD------FFQFMPSLRVFNMSNNHLLWKL 556 (863)
Q Consensus 493 ~~~lr~L~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~~----l~~~~~~------~~~~l~~L~~L~L~~~~~~~~l 556 (863)
...+..+++++|.+.. + +.+.+.++|+..++++-. ...+|+. .+-.+++|++||||+|-+-...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3466677777766532 1 122344466666665431 1122221 1234456666666666333222
Q ss_pred Cc----cccccCCCCeEEccCCCcc
Q 048126 557 PS----GISTLVSLEHLDLSGTAIT 577 (863)
Q Consensus 557 p~----~i~~l~~L~~L~L~~~~l~ 577 (863)
+. .+.++..|+.|.|.+|.+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC
Confidence 22 2334455555555555543
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4.9e-06 Score=93.63 Aligned_cols=193 Identities=12% Similarity=0.116 Sum_probs=110.5
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.++||.+..++.|.+++..++. +.+.++|+.|+||||+|+.+++... -....+ ...++.....+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~-------~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVT-------STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCC-------CCCCccCHHHHHHhcCCC
Confidence 4579999999999999987664 5778999999999999999988761 111010 011111111222211000
Q ss_pred CCC---ccccCCChhHHHHHHHH----HhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCchh-hh-hcc
Q 048126 205 FLD---ESWKNGSLEDKASDILR----ILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFLE-IC-GAM 273 (863)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~-~~~ 273 (863)
... +.......++....+.. ...+++-++|+|+|+... ....+...+.....+.++|++|.+.. +. ...
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 000 00001122222111111 123566789999998642 34444433433345567777666532 21 112
Q ss_pred cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 274 KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
.....+++++++.++..+.+.+.+..... .--.+....|++.++|.+..+..+
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23357899999999999999887755331 122456788999999987555443
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=1.9e-07 Score=104.05 Aligned_cols=121 Identities=29% Similarity=0.413 Sum_probs=77.2
Q ss_pred EEeccccc-cccccCCCCCccceEEccCCccccccchhhhcCC-CccEEEccCCCccccCCccccccCCCCeEEccCCCc
Q 048126 499 MSLMKNKI-ENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMP-SLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 499 L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 576 (863)
+....+.+ .........+.+..|.+.+|.+..+++. ...+. +|+.|++++| .+..+|..++.+++|+.|+++.|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 44444444 3333334456677777777777766654 34443 6777777777 4556666677777777777777777
Q ss_pred cccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccc
Q 048126 577 THLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSN 623 (863)
Q Consensus 577 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~ 623 (863)
..+|...+.+++|+.|+++++ .+..+|.. ++.+..|++|.+.++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCc
Confidence 777776667777777777776 55667763 3455557777766653
No 71
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.38 E-value=7e-07 Score=82.23 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=79.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCC--CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGA--PNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDIL 223 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (863)
+.+.+.|+|.+|+|||++++.+++..... ...-..++|+.+....+...+...++.+++..... ..+..++.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34689999999999999999999886210 00134677999988889999999999999876532 346677778888
Q ss_pred HHhccCcE-EEEEeccCCc-c--ccccccCCCCCCCCCcEEEEecCc
Q 048126 224 RILSKKKF-LLLLDDIWER-V--DLTKVGVPFPDPENKSKIVFTTRF 266 (863)
Q Consensus 224 ~~l~~kr~-LlVlDdv~~~-~--~~~~~~~~l~~~~~gs~IivTtR~ 266 (863)
+.+...+. +||+|+++.. . .++.+..... ..+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 88887655 9999999764 2 1222322222 566777777665
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.38 E-value=8.7e-06 Score=87.84 Aligned_cols=180 Identities=13% Similarity=0.166 Sum_probs=106.4
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEe--CCccCHHHHHHHHHHHh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVV--SKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l 203 (863)
.+++|++..++.+..++..+..+.+.++|..|+||||+|+.+++... ...+.. .++.+ +.......+...+ .++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~-~~i~~~~~~~~~~~~~~~~i-~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRE-NFLELNASDERGIDVIRNKI-KEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCcccc-ceEEeccccccchHHHHHHH-HHH
Confidence 45799999999999999877777789999999999999999998862 222221 22222 2222222111111 111
Q ss_pred CCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCch-hhhh-cccccceE
Q 048126 204 GFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFL-EICG-AMKAHEFL 279 (863)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~-~~~~~~~~ 279 (863)
....+ .....+-++++|+++... ....+...+......+++|+++... .+.. .......+
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 10000 001235689999986532 2223332233333456677766432 1211 11123468
Q ss_pred eecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 280 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
++.+++.++....+...+...... --.+....+++.++|.+.-+..
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 899999999999988877543311 2255688899999998765433
No 73
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.34 E-value=6e-06 Score=84.02 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=100.4
Q ss_pred CCcc-ch-hHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 048126 126 EPTV-GL-ESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 126 ~~~v-Gr-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 203 (863)
++|+ |. ...+..+.++........+.|+|+.|+|||+|++.+++... ..-..+.|+++..... .
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~---~-------- 87 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW---F-------- 87 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh---h--------
Confidence 3444 63 33445555554445557899999999999999999998862 2223566776543110 0
Q ss_pred CCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc---cccccc-cCCCCC-CCCC-cEEEEecCch---------h
Q 048126 204 GFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER---VDLTKV-GVPFPD-PENK-SKIVFTTRFL---------E 268 (863)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~~-~~~l~~-~~~g-s~IivTtR~~---------~ 268 (863)
..+. .+.+.. --+|++||+... ..|+.. ...+.. ...| .++|+||+.. +
T Consensus 88 -----------~~~~----~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 88 -----------VPEV----LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred -----------hHHH----HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 0011 111111 237899999753 233321 111111 1123 4699999854 2
Q ss_pred hhhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 269 ICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 269 v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
+...+....+++++++++++-.+++.+.+..... .--+++..-|++.+.|..-++..+
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 3444555678999999999999999886654321 122567788888887765544443
No 74
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.33 E-value=1.3e-06 Score=85.94 Aligned_cols=45 Identities=29% Similarity=0.380 Sum_probs=32.7
Q ss_pred CccchhHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLG---EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.||||+++++++...+. ....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999993 2457899999999999999999999988
No 75
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.33 E-value=7.5e-06 Score=79.59 Aligned_cols=175 Identities=20% Similarity=0.198 Sum_probs=92.6
Q ss_pred CCccchhHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLG-----EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
++|||-+.-++.+.-++. .+...-+.+||++|+||||||..+++.. ...|. +++...-...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~-------- 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKA-------- 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SC--------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhH--------
Confidence 679999988887655543 2356778899999999999999999997 34442 2222110011
Q ss_pred HHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc---------ccccccC--CCCCC----------CCCcE
Q 048126 201 RRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV---------DLTKVGV--PFPDP----------ENKSK 259 (863)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~~~~--~l~~~----------~~gs~ 259 (863)
.+++..+.. + +++-+|.+|+++... ..+.... ....+ .+-+-
T Consensus 90 ---------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 ---------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111111111 1 234466667776521 0011000 00000 12344
Q ss_pred EEEecCchhhhhcccccc--eEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhc
Q 048126 260 IVFTTRFLEICGAMKAHE--FLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMT 334 (863)
Q Consensus 260 IivTtR~~~v~~~~~~~~--~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 334 (863)
|=-|||...+..-+.... ..+++..+.+|-.++..+.+..-.. +--++.+.+|+++|.|-|--+.-+-+..+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 457888866644433332 3479999999999999887654331 12257799999999999976665554443
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.3e-05 Score=90.11 Aligned_cols=192 Identities=17% Similarity=0.126 Sum_probs=109.5
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
+++||-+..++.|.+++..++. +.+.++|++|+||||+|+.+++.. .-.+.+...+|.|.+... +..-...-+..++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 4579999999999999887665 466899999999999999999887 211222222333221100 0000000000000
Q ss_pred CCCccccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecC-chhhhhcc-cc
Q 048126 205 FLDESWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTR-FLEICGAM-KA 275 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR-~~~v~~~~-~~ 275 (863)
.. .....++ +..+.+.+ .+++-++|+|+++.. ..+..+...+........+|++|. ...+.... ..
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00 0111111 12222222 245668999999754 234445444444334555555554 33332222 22
Q ss_pred cceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHH
Q 048126 276 HEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALI 327 (863)
Q Consensus 276 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 327 (863)
...+++.+++.++....+.+.+...... --.+....|++.++|.+--+.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~---i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGRE---AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 3578999999999999999877544311 124567889999999886443
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=3.6e-07 Score=101.79 Aligned_cols=155 Identities=26% Similarity=0.350 Sum_probs=121.4
Q ss_pred ccccccceEEEEeccccccccccCCCCC--ccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCC
Q 048126 489 EIQNWRNVRRMSLMKNKIENLSETPTCP--HLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (863)
.+...+.+..+++.++.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+..+|...+.+++|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 3444467999999999999988765554 899999999999888644 789999999999999 667888888899999
Q ss_pred CeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEE
Q 048126 567 EHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALT 646 (863)
Q Consensus 567 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~ 646 (863)
+.|++++|++..+|..+..+..|++|.++++.. ..++.. +.++.++..|.+.++.... .+..++.++.|+.|+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~ 261 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNKLED-----LPESIGNLSNLETLD 261 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCceeee-----ccchhccccccceec
Confidence 999999999999999888888899999999843 444443 7788888888866554431 134455666666666
Q ss_pred EEEcCh
Q 048126 647 ITLKSW 652 (863)
Q Consensus 647 l~~~~~ 652 (863)
++.+..
T Consensus 262 ~s~n~i 267 (394)
T COG4886 262 LSNNQI 267 (394)
T ss_pred cccccc
Confidence 665443
No 78
>PTZ00202 tuzin; Provisional
Probab=98.32 E-value=7.6e-06 Score=86.66 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=99.7
Q ss_pred CCCccchhHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 125 CEPTVGLESMFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
...|+||+.+...+...|.+ ...+++.|+|++|+|||||++.+.... ++ .+++.-.. +..++++.++.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-----~~--~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-----GM--PAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-----Cc--eEEEECCC--CHHHHHHHHHH
Confidence 46799999999999999864 234589999999999999999999765 11 23333333 67999999999
Q ss_pred HhCCCCccccCCChhHHHHHHHHHh-----c-cCcEEEEEeccCCccccccc---cCCCCCCCCCcEEEEecCchhhhhc
Q 048126 202 RIGFLDESWKNGSLEDKASDILRIL-----S-KKKFLLLLDDIWERVDLTKV---GVPFPDPENKSKIVFTTRFLEICGA 272 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~IivTtR~~~v~~~ 272 (863)
+||.... ....++...|++.+ . +++.+||+-= .+...+..+ ...+.....-|+|++----+.+-..
T Consensus 332 ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 332 ALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 9997432 22234444444433 2 5666776642 111111111 0111122334677765444333111
Q ss_pred ---ccccceEeecCCChHHHHHHHHHHh
Q 048126 273 ---MKAHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 273 ---~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
..--..|-+++++.++|.++-++..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1223468899999999999887764
No 79
>PLN03025 replication factor C subunit; Provisional
Probab=98.31 E-value=7.6e-06 Score=87.71 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=105.5
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.+++|.+..++.|..++..++.+-+.++|++|+||||+|+.+++... ...|. .++-+..+...+... .+.++..+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDV-VRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHH-HHHHHHHHH
Confidence 45789999999998888777666678999999999999999998862 22232 122222333222222 222222211
Q ss_pred CCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCch-hhhhc-ccccceEe
Q 048126 205 FLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFL-EICGA-MKAHEFLK 280 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~-~~~~~~~~ 280 (863)
.... . .-.++.-++|+|+++... ....+...+......+++|+++... .+... ......++
T Consensus 90 ~~~~--~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 90 QKKV--T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred hccc--c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 0000 0 001346689999998642 2222222222223456777766442 22111 11124689
Q ss_pred ecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHH
Q 048126 281 VECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLAL 326 (863)
Q Consensus 281 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 326 (863)
+++++.++....+...+......- -.+....|++.++|-.-.+
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 999999999999988775543221 2456788999998865433
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1e-05 Score=90.82 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=110.1
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCC-C-CCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP-N-DFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~-~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
.++||-+..++.|.+++..+++ +.+.++|..|+||||+|+.+++...... . ... . .+..++.....+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~----~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I----TAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C----CCCCCcccHHHHHHHcC
Confidence 4579999999999999987765 4668899999999999999988762100 0 000 0 00111111111111110
Q ss_pred hCCCC---ccccCCChhHHHHHHHHH----hccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEE-EecCchhhhhc
Q 048126 203 IGFLD---ESWKNGSLEDKASDILRI----LSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIV-FTTRFLEICGA 272 (863)
Q Consensus 203 l~~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Ii-vTtR~~~v~~~ 272 (863)
-.... +.......++..+.+... ..++.-++|+|+++.. ..+..+...+.....+.++| +||....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 00000 000111222222222111 1345669999999864 33444544444433455555 45544444322
Q ss_pred c-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 273 M-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 273 ~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
. .-...+.++.++.++..+.+.+.+...... .-.+..+.|++.++|.|.....+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 123578999999999999998876543211 12345688999999998755544
No 81
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.7e-06 Score=101.09 Aligned_cols=110 Identities=23% Similarity=0.333 Sum_probs=92.5
Q ss_pred ceEEEEecccccccc--ccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEcc
Q 048126 495 NVRRMSLMKNKIENL--SETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (863)
.++.|++.+|.+.+. +.+..+++|+.|+|++|.+.+..+..++.+++|++|+|++|.+.+.+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 478899999888643 235789999999999999986555568999999999999998888999999999999999999
Q ss_pred CCCcc-ccchhhhcC-CCCCEEecCCccccCCCc
Q 048126 573 GTAIT-HLPIELQKL-VNLKCLNLEYMYNLNQFP 604 (863)
Q Consensus 573 ~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~lp 604 (863)
+|.++ .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99887 889888764 577889998886544444
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.9e-05 Score=88.12 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=106.2
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCC--C-----------------CEEEEEE
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPND--F-----------------DVVIWVV 185 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F-----------------~~~~wv~ 185 (863)
+++||.+..+..+...+..++. +.+.++|++|+||||+|+.+++... -... + ..++.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~-~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN-CENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 4589999988888888877766 4678999999999999999988751 1110 0 0112222
Q ss_pred eCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEe
Q 048126 186 VSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFT 263 (863)
Q Consensus 186 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivT 263 (863)
.+...++..+ +.+.+.... ....+++-++|+|+++.. .....+...+........+|++
T Consensus 93 aa~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2211112111 112211110 012245679999999753 2233343333332334444444
Q ss_pred cCc-hhhhhcc-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCC-chhHHHHHHHHh
Q 048126 264 TRF-LEICGAM-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAG-LPLALITIGRAM 333 (863)
Q Consensus 264 tR~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~~l 333 (863)
|.+ ..+.... .....+.+.+++.++....+.+.+..... .--.+....|++.++| ++.|+..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433 3332221 22357889999999999998887754321 1124567888888865 466666665543
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=3.3e-05 Score=86.47 Aligned_cols=195 Identities=16% Similarity=0.125 Sum_probs=110.4
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCE-EEEEEeCCccCHHHHHHHHHHHh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDV-VIWVVVSKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l 203 (863)
.++||-+..+..+...+..++. +.+.++|+.|+||||+|+.+++..- -...... --+. .+........+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~----~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIK----TCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcC----CCCCChHHHHHhcCC
Confidence 4579999999999888876654 5788999999999999999998762 1111000 0000 001111111111100
Q ss_pred CCCC---ccccCCChhHHHHHHHH----HhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEE-ecCchhhhhcc
Q 048126 204 GFLD---ESWKNGSLEDKASDILR----ILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVF-TTRFLEICGAM 273 (863)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv-TtR~~~v~~~~ 273 (863)
.... +.......++....+.. -+.+++-++|+|+++.. ..+..+...+......+.+|+ ||+...+....
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 0000 00011122222222211 12356778999999864 345555544544445566654 55555543322
Q ss_pred -cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 274 -KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 274 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
.....+++.+++.++....+.+.+...... --.+....|++.++|.+--+..
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~---ie~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLK---TDIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 223468899999999999999887654311 1245567899999997754433
No 84
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.26 E-value=8.6e-07 Score=89.93 Aligned_cols=241 Identities=17% Similarity=0.112 Sum_probs=146.2
Q ss_pred CCCCCccceEEccCCcccc----ccchhhhcCCCccEEEccCCCccc----cCCccc-------cccCCCCeEEccCCCc
Q 048126 512 TPTCPHLLSLFLSDNSLKM----IAGDFFQFMPSLRVFNMSNNHLLW----KLPSGI-------STLVSLEHLDLSGTAI 576 (863)
Q Consensus 512 ~~~~~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~L~~~~~~~----~lp~~i-------~~l~~L~~L~L~~~~l 576 (863)
......+..++|++|.+.. .....+.+.+.|+..++++- +.+ ++|+.+ -..++|++||||.|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4566778888888886542 22334667778888888875 333 344433 3456888888888865
Q ss_pred c-----ccchhhhcCCCCCEEecCCccccCCCcHHH-------------hhcCCCCcEEEeeccccccCchhhHHHHHcC
Q 048126 577 T-----HLPIELQKLVNLKCLNLEYMYNLNQFPRLV-------------MSAFSKLQVLRILKSNVLFGGHQFLVEELMG 638 (863)
Q Consensus 577 ~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~-------------~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 638 (863)
. .+-.-+.+++.|++|++.+| .+....... ++.-++|+.+....|.....+.......+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 4 22234667888888888888 333322221 2234578888777776665555556666777
Q ss_pred CccCceEEEEEcChHH--HHHHhhhhhhhhcceeeeeccccCCCccc--c-cchhhcCCCceEEEcCCcccccceecccc
Q 048126 639 MKHLMALTITLKSWEA--LQELLISQELQRCTQSLFLRCFNDSKSLD--I-FCLACLHNLNKLYVAGRKHLEDFQMTVQR 713 (863)
Q Consensus 639 L~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~~l~~~~~~ 713 (863)
.+.|..+.+..+.+.. ...+......+++|+.|+|+++.-..... + ..++.+++|+.|++++|..-+.-......
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 7888888887666532 22333444556788888887753221111 1 24556778888888887533211000000
Q ss_pred ccccccccccCcccEEEEeccCCCCCC------chhhccCCCcEEEEecccc
Q 048126 714 SSVNQLARGFHSLHTVKVGFCFKLKDL------TWLVFAPSLKSIVVLSCCN 759 (863)
Q Consensus 714 ~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~l~~~~~ 759 (863)
.+ ....|+|+.|.+.+|. ++.= ......|.|..|+|++|..
T Consensus 264 ---al-~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ---AL-KESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ---HH-hccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 01 1337889999988874 3321 1234578889999888653
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.2e-05 Score=88.45 Aligned_cols=182 Identities=18% Similarity=0.182 Sum_probs=107.2
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCC------------------CCCCEEEEEEe
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP------------------NDFDVVIWVVV 186 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 186 (863)
.++||-+..++.+...+..++. +.+.++|+.|+||||+|+.+++...... ..|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4579999999999999987654 4577999999999999999998651100 01112222222
Q ss_pred CCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH-HhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEE-
Q 048126 187 SKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR-ILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVF- 262 (863)
Q Consensus 187 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv- 262 (863)
.....++++ +.+ .+.+.. -..+++-++|+|+++.. ..+..+...+......+.+|+
T Consensus 96 as~~gvd~i-r~i-------------------i~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 96 ASRTGVEET-KEI-------------------LDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ccccCHHHH-HHH-------------------HHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 111111111 111 111111 12356679999999754 234444444444344565554
Q ss_pred ecCchhhhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh-HHHHHH
Q 048126 263 TTRFLEICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL-ALITIG 330 (863)
Q Consensus 263 TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 330 (863)
||....+... ......+++.+++.++....+.+.+..... .--.+....|++.++|.+- |+..+-
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5444333322 222357899999999988888876544321 1224556789999999664 444443
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.25 E-value=3.2e-05 Score=84.83 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=108.8
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCC-C------------------CCCCEEEEEE
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGA-P------------------NDFDVVIWVV 185 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~F~~~~wv~ 185 (863)
..+||.+..++.+.+++..++. +.+.++|+.|+||||+|+.++...... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 4579999999999999987654 467889999999999999998875210 0 12222 2222
Q ss_pred eCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEe
Q 048126 186 VSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFT 263 (863)
Q Consensus 186 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivT 263 (863)
.+...... ..+.+.+.+... -..+++-++|+|+++.. .....+...+......+.+|++
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 21111111 112222222110 01234558899998654 2344443344333445666666
Q ss_pred cCchh-hhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 264 TRFLE-ICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 264 tR~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
|.+.. +... ......+++.+++.++..+.+...+...... --.+.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~---i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK---IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCChHHHHHHH
Confidence 65543 2221 1223467889999999999988876543311 124678889999999887665544
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=3.2e-05 Score=83.42 Aligned_cols=196 Identities=12% Similarity=0.070 Sum_probs=109.9
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCC-CCCCE-EEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP-NDFDV-VIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~-~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
..+||-+..++.+.+.+..+++ +.+-++|+.|+||+|+|..+++...... ...+. ..-......+......+.+...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 5689999999999999988765 4688999999999999999988762111 00110 0000000000011122222111
Q ss_pred hCCCC-----c---cc-----cCCChhHHHHHHHHHhc-----cCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEE
Q 048126 203 IGFLD-----E---SW-----KNGSLEDKASDILRILS-----KKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVF 262 (863)
Q Consensus 203 l~~~~-----~---~~-----~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv 262 (863)
- .++ . .. ....+++ +..+.+.+. +.+-++|+||++... ....+...+.....++.+|+
T Consensus 99 ~-HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 99 A-HGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred C-CCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 0 000 0 00 0111222 334444443 456789999997542 23333333333334566676
Q ss_pred ecCchh-hhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 263 TTRFLE-ICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 263 TtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
+|.+.. +... ......+.+.+++.++..+++.+...... .+....+++.++|.|..+..+.
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 666643 3222 12235789999999999999987642211 1223678999999998766554
No 88
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.24 E-value=2.6e-06 Score=89.85 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=66.7
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCCccccCC
Q 048126 137 KVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL--QLEKIQEKIGRRIGFLDESWKNG 213 (863)
Q Consensus 137 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~ 213 (863)
++++++.. +.-....|+|++|+||||||++||+.. . ..+|+.++||.+++.. ++.++++.+...+-.. .++..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s--t~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE--CCCCC
Confidence 34444443 344578899999999999999999998 3 3489999999999887 7788888886322111 11111
Q ss_pred ChhHH-----HHHHHHH--hccCcEEEEEeccCCc
Q 048126 214 SLEDK-----ASDILRI--LSKKKFLLLLDDIWER 241 (863)
Q Consensus 214 ~~~~~-----~~~l~~~--l~~kr~LlVlDdv~~~ 241 (863)
..... +-...++ ..+++++|++|++...
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11111 1111122 3579999999999653
No 89
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.3e-05 Score=87.72 Aligned_cols=191 Identities=13% Similarity=0.084 Sum_probs=108.9
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
+++||-+..+..|..++..+++. .+.++|+.|+||||+|+.+++..- ...... ...+..... .+.+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~--~~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIG--NEPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccC--ccccCCCcH----HHHHHccCC
Confidence 45799999999999999877754 688999999999999999998761 111100 001111111 112211111
Q ss_pred CCCccc---cCCChhHHHHHHHHH-----hccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEec-Cchhhhhc-
Q 048126 205 FLDESW---KNGSLEDKASDILRI-----LSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTT-RFLEICGA- 272 (863)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~v~~~- 272 (863)
...-.. .....++ +..+.+. ..++.-++|+|+++.. ..+..+...+........+|++| ....+...
T Consensus 90 ~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred ccceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 000000 0111111 1222221 2356679999999864 34555544444333455555444 44444222
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
..-...|.+.+++.++..+.+.+.+..... .--.+....|++.++|.+.-+..
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHHHH
Confidence 122346899999999999998887654321 11245678899999998754433
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.22 E-value=1.2e-05 Score=93.84 Aligned_cols=169 Identities=21% Similarity=0.261 Sum_probs=98.0
Q ss_pred CCccchhHHHH---HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFD---KVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
+++||.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|. .+..+. ..+.++
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~di------- 93 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKDL------- 93 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHHH-------
Confidence 45799888774 56667777777788899999999999999999876 34441 111110 011111
Q ss_pred hCCCCccccCCChhHHHHHHHHHh--ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEE--ecCchh--hhh-cc
Q 048126 203 IGFLDESWKNGSLEDKASDILRIL--SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVF--TTRFLE--ICG-AM 273 (863)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv--TtR~~~--v~~-~~ 273 (863)
.+......+.+ .+++.+||+||++.. ...+.+...+ ..|+.+++ ||.+.. +.. ..
T Consensus 94 -------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 94 -------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred -------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 11111121111 246779999999753 2333443222 23555555 344432 211 11
Q ss_pred cccceEeecCCChHHHHHHHHHHhcccc----cCCCCChHHHHHHHHHHhCCchh
Q 048126 274 KAHEFLKVECLGPEDAWRLFRENLRRDV----LDNHPDIPELARSVAKEYAGLPL 324 (863)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~glPl 324 (863)
.....+.+++|+.++...++.+.+.... .....--.+....|++.+.|.--
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1234789999999999999988764210 00111224566888888887643
No 91
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.1e-06 Score=86.96 Aligned_cols=205 Identities=16% Similarity=0.110 Sum_probs=96.4
Q ss_pred CCCCccceEEccCCcccccc--chhhhcCCCccEEEccCCCcc---ccCCccccccCCCCeEEccCCCcc--ccchhhhc
Q 048126 513 PTCPHLLSLFLSDNSLKMIA--GDFFQFMPSLRVFNMSNNHLL---WKLPSGISTLVSLEHLDLSGTAIT--HLPIELQK 585 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~---~~lp~~i~~l~~L~~L~L~~~~l~--~lp~~~~~ 585 (863)
..++.++.|+|.+|.+.... ..++.+|++|++|+|+.|... +.+| ..+.+|++|-|.|+.+. ..-..+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 45666677777777555432 223556667777777666322 2222 23345666666666433 33344455
Q ss_pred CCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhh
Q 048126 586 LVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQ 665 (863)
Q Consensus 586 l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~ 665 (863)
++.++.|+++.|. ++.+.+..+... .. -+.+++|+...|...............
T Consensus 145 lP~vtelHmS~N~---------------~rq~n~Dd~c~e---------~~--s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 145 LPKVTELHMSDNS---------------LRQLNLDDNCIE---------DW--STEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred chhhhhhhhccch---------------hhhhcccccccc---------cc--chhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 5555555555441 111111111110 00 012233333333322222222233334
Q ss_pred hcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc----
Q 048126 666 RCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT---- 741 (863)
Q Consensus 666 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~---- 741 (863)
+++..+.+..|+-.+.....+...++.+..|.++.++.-.....+.. ..|+.|..|.+.+.+-...+.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L--------n~f~~l~dlRv~~~Pl~d~l~~~er 270 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL--------NGFPQLVDLRVSENPLSDPLRGGER 270 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH--------cCCchhheeeccCCcccccccCCcc
Confidence 46666655555432222223444556666666665443222222222 347888888887776554442
Q ss_pred ---hhhccCCCcEEEE
Q 048126 742 ---WLVFAPSLKSIVV 754 (863)
Q Consensus 742 ---~l~~l~~L~~L~l 754 (863)
.++.|++++.|+=
T Consensus 271 r~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 271 RFLLIARLTKVQVLNG 286 (418)
T ss_pred eEEEEeeccceEEecC
Confidence 2346677776643
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.21 E-value=3.2e-05 Score=76.05 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=92.8
Q ss_pred HHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCC-------------------CCCCEEEEEEeCCccCHHHHH
Q 048126 137 KVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP-------------------NDFDVVIWVVVSKDLQLEKIQ 196 (863)
Q Consensus 137 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~s~~~~~~~~~ 196 (863)
.+.+.+..+++ +.+.++|+.|+||||+|+.+.+...... .+.|............++. .
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~-i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQ-V 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHH-H
Confidence 45566666655 5788999999999999999988862110 1222221111111111111 1
Q ss_pred HHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCch-hhhhcc
Q 048126 197 EKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFL-EICGAM 273 (863)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~~ 273 (863)
+++.+.+... -..+.+-++|+||++... ....+...+......+.+|++|++. .+....
T Consensus 82 ~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 82 RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 1222222111 012456689999997642 3444444444444456677666653 222211
Q ss_pred -cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhH
Q 048126 274 -KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLA 325 (863)
Q Consensus 274 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 325 (863)
.....+.+.+++.++..+.+.+. + . -.+.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g-i-------~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G-I-------SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C-C-------CHHHHHHHHHHcCCCccc
Confidence 12357899999999999888876 1 1 145688999999998853
No 93
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.9e-05 Score=88.73 Aligned_cols=196 Identities=14% Similarity=0.159 Sum_probs=109.5
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCC-CCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP-NDFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l 203 (863)
+++||-+..++.|.+++..++. +.+.++|+.|+||||+|+.+++..-... ......- ...++.....+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcCC
Confidence 4589999999999999987765 5678999999999999999987751100 0000000 01122222222221100
Q ss_pred CCCC---ccccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEec-Cchhhhhc
Q 048126 204 GFLD---ESWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTT-RFLEICGA 272 (863)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~v~~~ 272 (863)
.... +.......++.. .+.+.. .++.-++|+|+|+.. ..+..+...+.......++|++| ....+...
T Consensus 92 h~D~~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0000 000111122221 122221 234558899999864 23444444444433455666554 43433222
Q ss_pred -ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 273 -MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 273 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
......+++++++.++..+.+.+.+...... --.+....|++.++|.+.-+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~---ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVP---AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2223578999999999999998876543321 12456788999999987555443
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.7e-05 Score=83.67 Aligned_cols=187 Identities=9% Similarity=0.035 Sum_probs=103.6
Q ss_pred CCccchhHHHHHHHHHhcCCC----------ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQ----------VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
+.++|-+..++.+.+++..+. .+.+.++|+.|+|||++|+.++..... .... ...++....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c---~~~~------~~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC---TDPD------EPGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC---CCCC------CCCCCCCHH
Confidence 457899999999999997653 456889999999999999999876511 1000 001111111
Q ss_pred HHHHHHHhCCC----CccccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEec
Q 048126 196 QEKIGRRIGFL----DESWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTT 264 (863)
Q Consensus 196 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt 264 (863)
.+.+...-... .+.......++. +.+.+.. .+++-++|+|+++... ....+...+.....+..+|++|
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 11111100000 000001111221 1222222 2345588889997642 2233333333334456566666
Q ss_pred Cc-hhhhhcc-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 265 RF-LEICGAM-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 265 R~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
.+ ..+.... .-...+.+.+++.++..+.+.+..+. ..+.+..+++.++|.|.....+.
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHHh
Confidence 55 3333221 22357899999999999888754321 13557889999999997665543
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3e-05 Score=87.45 Aligned_cols=194 Identities=12% Similarity=0.116 Sum_probs=107.2
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..++|.+..++.+.+++..+++ +.+.++|+.|+||||+|+.+++.... .. |.. ...++.....+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C-~~------~~~-~~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC-LN------PKD-GDCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CC------CCC-CCCCcccHHHHHHHcCCC
Confidence 4579999999999999976554 47889999999999999999987621 11 111 011122222222221111
Q ss_pred CCCccc---cCCChhHHHHHHHHH-----hccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEec-Cchhhhhc-
Q 048126 205 FLDESW---KNGSLEDKASDILRI-----LSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTT-RFLEICGA- 272 (863)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~v~~~- 272 (863)
...-.. .....++. +.+.+. ..+++-++|+|+++.. ..+..+...+........+|++| ....+...
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 000000 00111221 112111 1233446999999753 33444443333333455555544 43333221
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh-HHHHHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL-ALITIGR 331 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~ 331 (863)
......+++.+++.++....+.+.+...... --.+.+..+++.++|.+. |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~---Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIK---IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2223578999999999999888876543211 124567889999999664 4444443
No 96
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=2.3e-05 Score=78.91 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=87.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
..+.+.|+|..|+|||+|++.++... . ..|++.. .+...++..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHHh-----------------------
Confidence 34679999999999999999988765 1 1244321 111111111
Q ss_pred hccCcEEEEEeccCCcc-ccccccCCCCC-CCCCcEEEEecCc---------hhhhhcccccceEeecCCChHHHHHHHH
Q 048126 226 LSKKKFLLLLDDIWERV-DLTKVGVPFPD-PENKSKIVFTTRF---------LEICGAMKAHEFLKVECLGPEDAWRLFR 294 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~~-~~~~~~~~l~~-~~~gs~IivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 294 (863)
+.+ -+|++||+.... +-..+...+.. ...|..||+|++. +++...+.....+++++++.++-.++++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889996431 11112111111 1236678998874 2334445556789999999999999999
Q ss_pred HHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 295 ENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
+.+...... --+++..-|++.+.|..-++..
T Consensus 164 ~~~~~~~~~---l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQLY---VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcCCC---CCHHHHHHHHHHhhhhHHHHHH
Confidence 988653322 2256788888888887766654
No 97
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=2.2e-05 Score=89.36 Aligned_cols=193 Identities=13% Similarity=0.132 Sum_probs=106.0
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh-
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRI- 203 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l- 203 (863)
.++||.+..+..|.+++..+++ +.+.++|+.|+||||+|+.+++... -..... + ..+......+.+...-
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~----~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---G----EPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---C----CCCcccHHHHHHhccCc
Confidence 4579999999999999987664 4678999999999999999988751 111100 0 0001001111110000
Q ss_pred -CC-CCccccCCChhHHHHHHHH----HhccCcEEEEEeccCCccc--cccccCCCCCCCCCcEEEEecCch-hhhhc-c
Q 048126 204 -GF-LDESWKNGSLEDKASDILR----ILSKKKFLLLLDDIWERVD--LTKVGVPFPDPENKSKIVFTTRFL-EICGA-M 273 (863)
Q Consensus 204 -~~-~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~-~v~~~-~ 273 (863)
.. ..+.......+++...+.. -..+++-++|+|+++.... ...+...+......+++|++|.+. .+... .
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 00 0000011111221111111 1224667899999976432 333333333223456666666543 22211 1
Q ss_pred cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 274 KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
+....+.+.+++.++....+.+.+...... --.+....|++.++|.+.-+..+
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHHHH
Confidence 222457889999999999998877654321 12456789999999988554443
No 98
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.3e-05 Score=84.83 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=108.6
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCC------------------CCCCEEEEEEe
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAP------------------NDFDVVIWVVV 186 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 186 (863)
.++||-+..++.+.+.+..+++. .+-++|+.|+||||+|+.++....... ..+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 45799999999999988877665 788999999999999999987531000 01112233333
Q ss_pred CCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEec
Q 048126 187 SKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTT 264 (863)
Q Consensus 187 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt 264 (863)
+...++.++ +.+++..... -..+++-++|+|+++... ....+...+......+++|++|
T Consensus 93 as~~~vddI-R~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ccCCCHHHH-HHHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 322222221 1122211100 012456689999997542 3444444444444566666555
Q ss_pred -Cchhhhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 265 -RFLEICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 265 -R~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
....+... ......+.+.+++.++....+.+.+...... --.+....|++.++|.+..+..
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~---i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE---HDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 33444322 2223568999999999999998877654311 1245677899999987754433
No 99
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=2.7e-05 Score=83.48 Aligned_cols=197 Identities=11% Similarity=0.083 Sum_probs=112.3
Q ss_pred CCCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCC-CCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 125 CEPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP-NDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
...++|-+...+.+...+..++. +.+.|+|+.|+||||+|..+++...... ..+... .....+......+.+...
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 35689999999999999987654 4688999999999999999998872100 001111 011111122233333322
Q ss_pred hC-------CCCccc-----cCCChhHHHHHHHHHhc-----cCcEEEEEeccCCcc--ccccccCCCCCCCCCcE-EEE
Q 048126 203 IG-------FLDESW-----KNGSLEDKASDILRILS-----KKKFLLLLDDIWERV--DLTKVGVPFPDPENKSK-IVF 262 (863)
Q Consensus 203 l~-------~~~~~~-----~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~-Iiv 262 (863)
-. .+.+.. .....++ +..+.+++. +++-++|+|+++... ....+...+.....+.. |++
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 10 000000 0112233 334444443 466799999998642 22333222322223444 445
Q ss_pred ecCchhhhhcc-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 263 TTRFLEICGAM-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 263 TtR~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
|++...+.... .....+++.+++.++..+++.+.... . . --.+....|++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54444332221 12347899999999999999874321 1 1 124557889999999998766544
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.2e-05 Score=89.88 Aligned_cols=193 Identities=15% Similarity=0.145 Sum_probs=109.9
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.++||-+..++.|.+.+..+++. .+.++|..|+||||+|+.+++..-. ...+ .+..+......+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGI-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCC-------CCCCCCCCHHHHHHHcCCC
Confidence 46899999999999999877654 5679999999999999999887621 0000 0111122222222221100
Q ss_pred CCC---ccccCCChhHHHHHHHHH-----hccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCc-hhhhhc-
Q 048126 205 FLD---ESWKNGSLEDKASDILRI-----LSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRF-LEICGA- 272 (863)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~- 272 (863)
... +.......++. +.+.+. ..+++-++|+|+++.. .....+...+.......++|++|.+ ..+...
T Consensus 88 ~D~ieidaas~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 000 00001112222 122221 2356679999999864 2344443333333345555554444 444321
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
..-...+.+++++.++..+.+.+.+..... ..-.+....|++.++|.+-.+..+.
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 122357899999999999999887643221 1224556789999999887555443
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.8e-05 Score=85.78 Aligned_cols=198 Identities=12% Similarity=0.113 Sum_probs=111.5
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEE-eCCccCHHHHHHHHHHHh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVV-VSKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l 203 (863)
.+++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+++.... ...++...|.. +...++.....+.+...-
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c-~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC-CCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 45899999999999999876654 5889999999999999999987721 11111111110 011122222222222111
Q ss_pred CCCCccc---cCCChhHHHHHHHHHh-----ccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEec-Cchhhhhc
Q 048126 204 GFLDESW---KNGSLEDKASDILRIL-----SKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTT-RFLEICGA 272 (863)
Q Consensus 204 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v~~~ 272 (863)
....... .....++.. .+.+.+ .+++-++|+|+++... .+..+...+......+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 1100000 011122222 233333 2455688999997643 4555554454444566666555 43444322
Q ss_pred c-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 273 M-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 273 ~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
. .....+++.+++.++..+.+...+..... .--.+.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 12346889999999998888877643221 12256788999999997754443
No 102
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=1.5e-06 Score=67.51 Aligned_cols=57 Identities=39% Similarity=0.625 Sum_probs=38.6
Q ss_pred CCccEEEccCCCccccCC-ccccccCCCCeEEccCCCccccch-hhhcCCCCCEEecCCc
Q 048126 540 PSLRVFNMSNNHLLWKLP-SGISTLVSLEHLDLSGTAITHLPI-ELQKLVNLKCLNLEYM 597 (863)
Q Consensus 540 ~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~ 597 (863)
++|++|++++|. +..+| ..+.++++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 357777777773 33444 466677777777777777776654 4677777777777766
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6.1e-05 Score=82.71 Aligned_cols=179 Identities=12% Similarity=0.160 Sum_probs=103.1
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCC-----CCCCCEEE-EEEeCCccCHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGA-----PNDFDVVI-WVVVSKDLQLEKIQEK 198 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~F~~~~-wv~~s~~~~~~~~~~~ 198 (863)
.+++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+++..... ...|...+ -+......++.. .+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 4579999999999999987654 478899999999999999998876210 11122111 111111111111 112
Q ss_pred HHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEec-Cchhhhhc-cc
Q 048126 199 IGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTT-RFLEICGA-MK 274 (863)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v~~~-~~ 274 (863)
+++++... -..+++-++|+|+++... .+..+...+......+.+|++| +...+... ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 22222110 012345589999986532 2444433332223345555554 33333211 22
Q ss_pred ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHH
Q 048126 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLAL 326 (863)
Q Consensus 275 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 326 (863)
....++++++++++....+...+......- -.+.+..+++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 234688999999999988888765433211 2467788888999865533
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.13 E-value=3.6e-05 Score=78.33 Aligned_cols=171 Identities=12% Similarity=0.073 Sum_probs=97.3
Q ss_pred CCcc-chhHH-HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTV-GLESM-FDKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~v-Gr~~~-~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
++|+ |.... +..+.++... .....+.|+|..|+|||+||+.+++... .... .+.+++...... .
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~~------~---- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPLL------A---- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhHH------H----
Confidence 4455 54433 3444444432 3456789999999999999999998762 1222 345555433210 0
Q ss_pred hCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccccc--cccCCCCC-CCCCc-EEEEecCchhhhh-------
Q 048126 203 IGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVDLT--KVGVPFPD-PENKS-KIVFTTRFLEICG------- 271 (863)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~~~l~~-~~~gs-~IivTtR~~~v~~------- 271 (863)
+ ... ...-+||+||+.....+. .+...+.. ...+. .||+|++......
T Consensus 85 ~--------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 85 F--------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred H--------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 0 011 123478899997543221 12122211 12333 4667766533211
Q ss_pred -cccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHh
Q 048126 272 -AMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAM 333 (863)
Q Consensus 272 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 333 (863)
.+.....++++++++++-..++.+.+..... .--++....+++.+.|.+..+..+-..+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222357899999998877777765433221 1224677888888999998877766554
No 105
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.8e-05 Score=86.71 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=106.6
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCCC-------------------CCCEEEEEE
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPN-------------------DFDVVIWVV 185 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~F~~~~wv~ 185 (863)
.++||-+..++.|.+++..++++ .+.++|+.|+||||+|+.+++..-. .. .|.-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC-EKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC-CCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 45899999999999999876654 5789999999999999999987611 11 111123333
Q ss_pred eCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEe
Q 048126 186 VSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFT 263 (863)
Q Consensus 186 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivT 263 (863)
.+....+.++ +.+++.+... -..++.-++|+|+|+.. .....+...+......+++|++
T Consensus 95 aas~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 2222222222 2222222110 11245668999999864 2344443334333345666665
Q ss_pred cCc-hhhhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 264 TRF-LEICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 264 tR~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
|.+ ..+... ......+++++++.++....+.+.+...... --.+....|++.++|.+..+..
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHH
Confidence 543 333211 1123467899999999888777766543211 1234567889999998755444
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.11 E-value=2.2e-05 Score=85.79 Aligned_cols=170 Identities=21% Similarity=0.282 Sum_probs=98.1
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
..+.|++..+++|.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 3568999999999887732 124568899999999999999999987 3333 22211
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh-ccCcEEEEEeccCCcc----------------ccccccCCCC--C
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL-SKKKFLLLLDDIWERV----------------DLTKVGVPFP--D 253 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------------~~~~~~~~l~--~ 253 (863)
..+.... ++ ........+.+.. ...+.+|++||++... .+..+...+. .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111111 00 0111122222222 3467899999987531 0111111111 1
Q ss_pred CCCCcEEEEecCchhh-----hhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 254 PENKSKIVFTTRFLEI-----CGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 254 ~~~gs~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
...+.+||.||..... ......+..+.++..+.++..++|+..+.........+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 1246778888875432 22112345789999999999999998775543121122 466777777654
No 107
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.3e-07 Score=103.83 Aligned_cols=162 Identities=23% Similarity=0.305 Sum_probs=82.1
Q ss_pred cCCCcccCcccccccceEEEEeccccccccccC---------------------------------CCCCccceEEccCC
Q 048126 480 AGLGLTEAPEIQNWRNVRRMSLMKNKIENLSET---------------------------------PTCPHLLSLFLSDN 526 (863)
Q Consensus 480 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~---------------------------------~~~~~L~~L~l~~~ 526 (863)
.+-+.+.+-++..++++|+|-+.++.+.....+ .....|.+.+.++|
T Consensus 95 pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN 174 (1096)
T KOG1859|consen 95 PARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN 174 (1096)
T ss_pred CCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh
Confidence 333444455677888999999998876543221 11123344444444
Q ss_pred ccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCCccccCCCcH
Q 048126 527 SLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPR 605 (863)
Q Consensus 527 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~ 605 (863)
.+.....+ +.-++.|+.|||++|++. ... .+..|++|.+|||++|.+..+|.- ...+ +|+.|.+++| .++.+-.
T Consensus 175 ~L~~mD~S-Lqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g 249 (1096)
T KOG1859|consen 175 RLVLMDES-LQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG 249 (1096)
T ss_pred hHHhHHHH-HHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh
Confidence 44333322 445556666666666332 222 455566666666666665555532 1222 2666666655 3444443
Q ss_pred HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcC
Q 048126 606 LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKS 651 (863)
Q Consensus 606 ~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 651 (863)
+.+|.+|+.|+++.|-+..- .-+.-|..|..|+.|.+.+|.
T Consensus 250 --ie~LksL~~LDlsyNll~~h---seL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 250 --IENLKSLYGLDLSYNLLSEH---SELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred --HHhhhhhhccchhHhhhhcc---hhhhHHHHHHHHHHHhhcCCc
Confidence 55566666666655544321 122333334444555555443
No 108
>PRK05642 DNA replication initiation factor; Validated
Probab=98.10 E-value=5.3e-05 Score=77.03 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=89.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL 226 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (863)
...+.|+|..|+|||+|++.+++... ..-..++|++..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999998762 1123567776432 1110 01122222
Q ss_pred ccCcEEEEEeccCCc---ccccc-ccCCCCC-CCCCcEEEEecCchhh---------hhcccccceEeecCCChHHHHHH
Q 048126 227 SKKKFLLLLDDIWER---VDLTK-VGVPFPD-PENKSKIVFTTRFLEI---------CGAMKAHEFLKVECLGPEDAWRL 292 (863)
Q Consensus 227 ~~kr~LlVlDdv~~~---~~~~~-~~~~l~~-~~~gs~IivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~l 292 (863)
.+-. +||+||+... ..|.. +...+.. ...|.+||+|++...- ...+....++++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 6788999643 23432 2222211 2246678888875322 22333446789999999999999
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 293 FRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 293 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
+++++......- -+++..-|++.+.|-.-.+..+
T Consensus 175 l~~ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 175 LQLRASRRGLHL---TDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHH
Confidence 996654432111 1466777888777765444433
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.06 E-value=4.5e-05 Score=76.54 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=92.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
....+.|+|..|+|||+|.+++++...+.... ..++|++ ..+....+...+... . ...+.+.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~~------~~~f~~~~~~~~~~~-------~----~~~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYLS------AEEFIREFADALRDG-------E----IEEFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEEE------HHHHHHHHHHHHHTT-------S----HHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcccc-ccceeec------HHHHHHHHHHHHHcc-------c----chhhhhh
Confidence 34578999999999999999999987321112 2466664 445555555544221 1 2233444
Q ss_pred hccCcEEEEEeccCCccc---ccc-ccCCCCC-CCCCcEEEEecCchh---------hhhcccccceEeecCCChHHHHH
Q 048126 226 LSKKKFLLLLDDIWERVD---LTK-VGVPFPD-PENKSKIVFTTRFLE---------ICGAMKAHEFLKVECLGPEDAWR 291 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~~~---~~~-~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~ 291 (863)
+++ -=+|++||++.... |.+ +...+.. ...|-+||+|++... +...+...-++++++.+.++-.+
T Consensus 95 ~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 95 LRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp HCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred hhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 443 34788999976422 221 1111110 124668999996532 23444555689999999999999
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 292 LFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 292 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
++.+.+...... --++++.-|++.+.+..-.+..
T Consensus 174 il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 174 ILQKKAKERGIE---LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHH
Confidence 999988764422 2255667777776655444433
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=7.5e-05 Score=84.92 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=104.9
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCC------------------CCCCEEEEEEe
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAP------------------NDFDVVIWVVV 186 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 186 (863)
.++||-+..++.+.+++..++.. .+.++|+.|+||||+|+.+++..-... ..|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 45799999999999999876654 567999999999999999988761100 00111222221
Q ss_pred CCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEec
Q 048126 187 SKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTT 264 (863)
Q Consensus 187 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt 264 (863)
+....+.. .+.+++..... -..+++-++|+|+++... ....+...+......+.+|++|
T Consensus 96 ~~~~~vd~-ir~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cccCCHHH-HHHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 11111111 11222111100 112456799999997643 2333433343333456666555
Q ss_pred Cc-hhhhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 265 RF-LEICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 265 R~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
.+ ..+... ......+++.+++.++..+.+.+.+..... ..-.+....|++.++|.+--+..
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~al~ 219 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDALS 219 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 44 333211 112346889999999999888877653321 12245568899999997754333
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00011 Score=84.37 Aligned_cols=196 Identities=12% Similarity=0.098 Sum_probs=110.6
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC--EEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD--VVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
.++||.+..++.|.+++..++. +.+.++|+.|+||||+|+.+++.... ..... ...+ ..++...-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~----~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTI----DLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCcc----ccCcccHHHHHHhcC
Confidence 4579999999999999987764 46889999999999999999987621 11000 0000 011111112222221
Q ss_pred hCCCCcc---ccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEec-Cchhhhh
Q 048126 203 IGFLDES---WKNGSLEDKASDILRIL-----SKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTT-RFLEICG 271 (863)
Q Consensus 203 l~~~~~~---~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v~~ 271 (863)
-....-. ......++.. .+.+.+ .+++-++|+|+++... ....+...+.....++.+|++| ....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 1110000 0111222221 222222 2355679999997543 3444444444334456666544 4444322
Q ss_pred cc-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 272 AM-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 272 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
.. .....+.+..++.++....+.+.+...... --.+....|++.++|.+.-+...-
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~---i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE---VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 21 123578999999999999998877543311 123567889999999886655443
No 112
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.03 E-value=0.00047 Score=68.69 Aligned_cols=172 Identities=20% Similarity=0.240 Sum_probs=99.2
Q ss_pred CCccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
.+|||.++.++.+.=++.. +...-+.++|++|.||||||.-+++.. .+ .+. ++-+.-.....-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeE----ecccccccChhhHHHHH
Confidence 5689999888887766642 456788999999999999999999988 22 221 11110000001111111
Q ss_pred HHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc------------c------------cccccCCCCCCCC
Q 048126 201 RRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV------------D------------LTKVGVPFPDPEN 256 (863)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~------------~~~~~~~l~~~~~ 256 (863)
..+ + ..=.|.+|.++... + -..+...+| +
T Consensus 99 t~L-----------------------e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp---p 151 (332)
T COG2255 99 TNL-----------------------E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP---P 151 (332)
T ss_pred hcC-----------------------C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC---C
Confidence 111 1 12234456554321 0 011111111 1
Q ss_pred CcEEEEecCchhhhhcccc--cceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhc
Q 048126 257 KSKIVFTTRFLEICGAMKA--HEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMT 334 (863)
Q Consensus 257 gs~IivTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 334 (863)
-+-|=-|||.-.+..-... .-+.+++..+.+|-.+...+.+..-.... -++-+.+|+++..|-|--+.-+-+..+
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 2333468887655332222 23568999999999999998875433222 245689999999999976655554443
No 113
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.01 E-value=1.4e-05 Score=85.05 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=63.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc--cCHHHHHHHHHHHhCCCCccccCCChh--HHHH-
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD--LQLEKIQEKIGRRIGFLDESWKNGSLE--DKAS- 220 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~--~~~~- 220 (863)
.-..++|+|++|+|||||++.+++.. . .++|+..+||.+.+. .++.++++.+...+-... ++..... ..+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast--~d~p~~~~~~va~~ 242 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPASRHVQVAEM 242 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEec--CCCChHHHHHHHHH
Confidence 44689999999999999999999998 3 348999999999866 789999999954332211 1111111 1111
Q ss_pred ---HHHH-HhccCcEEEEEeccCCc
Q 048126 221 ---DILR-ILSKKKFLLLLDDIWER 241 (863)
Q Consensus 221 ---~l~~-~l~~kr~LlVlDdv~~~ 241 (863)
.... .-.+++++|++|++...
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhHH
Confidence 1111 23579999999999753
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00011 Score=83.35 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=110.7
Q ss_pred CCccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.++||-+..++.|.+++..++ .+.+.++|+.|+||||+|+.+++... -....+ ...++.....+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 457999988899999888765 46778899999999999999998762 111000 011111122222221110
Q ss_pred CCCccc---cCCChhHHHHHHHHH-----hccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCc-hhhhhc-
Q 048126 205 FLDESW---KNGSLEDKASDILRI-----LSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRF-LEICGA- 272 (863)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~- 272 (863)
...-.. .....++ ++.+.+. ..+++-++|+|+++.. .....+...+........+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000000 0111111 1122222 2346679999999764 2334444444333334556655544 444322
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch-hHHHHHHHHh
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP-LALITIGRAM 333 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 333 (863)
......+++++++.++....+.+.+...... --.+.+..|++.++|.+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1123468899999999999888866543211 12456788999999965 6777666544
No 115
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.0002 Score=82.33 Aligned_cols=199 Identities=12% Similarity=0.129 Sum_probs=109.5
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEE-eCCccCHHHHHHHHHHHh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVV-VSKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l 203 (863)
.++||-+..++.+.+++..+++ +.+.++|+.|+||||+|+.+++... -...++.-.|-. +...++.....+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 4589999999999999887665 4588999999999999999988762 111111001111 011122222222222111
Q ss_pred CCCCccc---cCCChhHHHHHHHHHh-----ccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEec-Cchhhhhc
Q 048126 204 GFLDESW---KNGSLEDKASDILRIL-----SKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTT-RFLEICGA 272 (863)
Q Consensus 204 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v~~~ 272 (863)
....... .....++... +.+.+ .+.+-++|+|+++... ....+...+......+.+|++| +...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 1100000 1111233222 22222 3455688999997643 2444444444433455555444 44444322
Q ss_pred -ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh-HHHHH
Q 048126 273 -MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL-ALITI 329 (863)
Q Consensus 273 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 329 (863)
......+++.+++.++....+.+.+...... --.+.+..|++.++|..- |+..+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 2234578999999999888888766432211 124568889999999654 44433
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00023 Score=81.11 Aligned_cols=196 Identities=13% Similarity=0.111 Sum_probs=109.0
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.++||.+..++.|.+++..+++. .+.++|+.|+||||+|+.+++..... ...+ ...++.....+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~-------~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPT-------ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCC-------CCcccccHHHHHhhcccC
Confidence 45799999999999999877654 57899999999999999999876210 1000 001111111222211000
Q ss_pred CCC-----ccccCCChhHHHHHHHHH-----hccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEE-ecCchhhhh
Q 048126 205 FLD-----ESWKNGSLEDKASDILRI-----LSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVF-TTRFLEICG 271 (863)
Q Consensus 205 ~~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv-TtR~~~v~~ 271 (863)
... +.......++. ..+.+. ..+++-++|+|+++.. .....+...+........+|+ ||....+..
T Consensus 85 ~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 000 00001112221 122211 1245568899999753 334444444443334555554 554444432
Q ss_pred c-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh-HHHHHHHHh
Q 048126 272 A-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL-ALITIGRAM 333 (863)
Q Consensus 272 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~l 333 (863)
. ......+++.+++.++..+.+.+.+...... --.+....|++.++|.+- |+..+-.++
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~---i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVV---VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 2224578999999999998888766543311 124566888999999774 444444443
No 117
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.94 E-value=9.9e-06 Score=84.97 Aligned_cols=268 Identities=17% Similarity=0.189 Sum_probs=167.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD-VVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
..+.+.++|.|||||||++-.+.. . ...|. .+.++....-.+...+.-.....++.... +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 467899999999999999999998 4 34554 66777777777777777777777776542 22344556777
Q ss_pred HhccCcEEEEEeccCCccc-cccccCCCCCCCCCcEEEEecCchhhhhcccccceEeecCCChH-HHHHHHHHHhcccc-
Q 048126 225 ILSKKKFLLLLDDIWERVD-LTKVGVPFPDPENKSKIVFTTRFLEICGAMKAHEFLKVECLGPE-DAWRLFRENLRRDV- 301 (863)
Q Consensus 225 ~l~~kr~LlVlDdv~~~~~-~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~- 301 (863)
...++|.++|+||-....+ -......+..+...-.|+.|+|.... ........+++|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 7888999999999754321 11111112233345568888887532 234456778888875 78899887664321
Q ss_pred -cCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhcC---CCCCC----CcchhhhhhhhhcCC
Q 048126 302 -LDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKKTTQEWHHAIQILRRSS---SEFPG----MGKEVYPLLKFSYDS 373 (863)
Q Consensus 302 -~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~---~~~~~----~~~~~~~~l~~sy~~ 373 (863)
..-...-...+.+|.++..|.|++|...++..+.- ...+ +.+.+++.. ..... -.....+.+.+||.-
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~---i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~l 236 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDE---IAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYAL 236 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHH---HHHHHhhHHHHHhcccccchhHHHhccchhhhhhHh
Confidence 11122335678999999999999999999888762 2222 122222211 11100 012467889999999
Q ss_pred CCchhhHHHHhHhccCCCCccccHHhHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHhcccccc
Q 048126 374 LPDDTIRSCFLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYIIGILLHACLLEEE 438 (863)
Q Consensus 374 L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~ 438 (863)
|.. -.+.-|--++.|...+... ...|.+-|=.... ..-.....+..+++.++....
T Consensus 237 Ltg-we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 237 LTG-WERALFGRLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred hhh-HHHHHhcchhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhhh
Confidence 987 5677788888887665443 2234444322111 112223335667777776554
No 118
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.94 E-value=0.00016 Score=77.69 Aligned_cols=145 Identities=10% Similarity=0.120 Sum_probs=83.5
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
++++|.+...+.+..++..+.. +++.++|++|+||||+|+.+++.. ... ...+..+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 4579999999999999987654 566779999999999999999875 222 23444443 222222111111000
Q ss_pred CCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--c-cccccCCCCCCCCCcEEEEecCchhh-hhc-ccccceE
Q 048126 205 FLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--D-LTKVGVPFPDPENKSKIVFTTRFLEI-CGA-MKAHEFL 279 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~-~~~~~~~l~~~~~gs~IivTtR~~~v-~~~-~~~~~~~ 279 (863)
. ..+.+.+-++|+||++... + ...+...+.....++++|+||..... ... ......+
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0 0011345578999997541 1 12222223333456788888865432 111 1112356
Q ss_pred eecCCChHHHHHHHHH
Q 048126 280 KVECLGPEDAWRLFRE 295 (863)
Q Consensus 280 ~l~~L~~~e~~~lf~~ 295 (863)
.++..+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777777777666554
No 119
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.94 E-value=8.7e-05 Score=77.07 Aligned_cols=153 Identities=13% Similarity=0.116 Sum_probs=80.0
Q ss_pred CccchhHHHHHHHHHhc---------------CCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC
Q 048126 127 PTVGLESMFDKVWRCLG---------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ 191 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 191 (863)
.++|.+..+++|.+... .+...-+.++|++|+||||+|+.+++..... ..-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 46888877766654321 0234567899999999999999998875211 11111123333221
Q ss_pred HHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc----------ccccccCCCCCCCCCcEEE
Q 048126 192 LEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV----------DLTKVGVPFPDPENKSKIV 261 (863)
Q Consensus 192 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~~~l~~~~~gs~Ii 261 (863)
++.. .. ...........+.. . ..-+|++|+++... ..+.+...+........+|
T Consensus 84 --~l~~----~~-------~g~~~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 --DLVG----EY-------IGHTAQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred --Hhhh----hh-------ccchHHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 1111 10 00111111112211 1 23488999997521 1222322232333334556
Q ss_pred EecCchhh----------hhcccccceEeecCCChHHHHHHHHHHhccc
Q 048126 262 FTTRFLEI----------CGAMKAHEFLKVECLGPEDAWRLFRENLRRD 300 (863)
Q Consensus 262 vTtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 300 (863)
+++...+. ...+ ...+.+++++.++-.+++.+.+...
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred ecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHHc
Confidence 66544322 1111 2457899999999999998877543
No 120
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.00075 Score=71.89 Aligned_cols=192 Identities=16% Similarity=0.136 Sum_probs=116.4
Q ss_pred CCccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
+..+||+.+++.+.+++.. ...+-+.|.|.+|.|||.+...++.+...-... -.++++.+..-.....++..|..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHH
Confidence 5679999999999999864 456789999999999999999999987211111 24577777665566777777777
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhccC--cEEEEEeccCCccc--cccccCCCCC-CCCCcEEEEecCchhh------h
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILSKK--KFLLLLDDIWERVD--LTKVGVPFPD-PENKSKIVFTTRFLEI------C 270 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~--~~~~~~~l~~-~~~gs~IivTtR~~~v------~ 270 (863)
.+-.... ......+....+.++..+. -+++|+|..+.... -..+...|.+ .-+++|+|+.---..+ .
T Consensus 229 ~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 229 SLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 6611110 1122255666677766654 58999999864211 1111111111 1245666543321111 1
Q ss_pred hcc-----cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc
Q 048126 271 GAM-----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 271 ~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 322 (863)
... -....+..+|.+.++-.++|..+..... ..+.+....+-+++|+.|.
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccC
Confidence 111 1234678899999999999999876543 1223333444555555443
No 121
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.93 E-value=0.00015 Score=75.83 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhcc
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSK 228 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 228 (863)
-+.++|++|+|||++|+.++..... .......-|+.++. .++ ...+.. .+.......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~l----~~~~~g-------~~~~~~~~~~~~---a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DDL----VGQYIG-------HTAPKTKEILKR---A 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HHH----hHhhcc-------cchHHHHHHHHH---c
Confidence 5789999999999999888776521 11111112444442 122 221111 111112222222 1
Q ss_pred CcEEEEEeccCCc------cc-----cccccCCCCCCCCCcEEEEecCchhhhhcc--------cccceEeecCCChHHH
Q 048126 229 KKFLLLLDDIWER------VD-----LTKVGVPFPDPENKSKIVFTTRFLEICGAM--------KAHEFLKVECLGPEDA 289 (863)
Q Consensus 229 kr~LlVlDdv~~~------~~-----~~~~~~~l~~~~~gs~IivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~ 289 (863)
..-+|++|++... .+ ...+...+.....+.+||+++......... .....+++++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3468899999632 11 222333333344566777777543221111 1134689999999999
Q ss_pred HHHHHHHhcc
Q 048126 290 WRLFRENLRR 299 (863)
Q Consensus 290 ~~lf~~~~~~ 299 (863)
.+++...+..
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 122
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.93 E-value=0.00029 Score=72.07 Aligned_cols=191 Identities=15% Similarity=0.134 Sum_probs=111.2
Q ss_pred HHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCC---CCEEEEEEeCCccCHHHHHHHHHHHhCCCCc
Q 048126 135 FDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPND---FDVVIWVVVSKDLQLEKIQEKIGRRIGFLDE 208 (863)
Q Consensus 135 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 208 (863)
++++.+++.. .+.+-+.|||..|.|||++++++...+....+. --.++.|.....++...++..|+.+++.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 4444444433 356678999999999999999999887221111 1157788888899999999999999998763
Q ss_pred cccCCChhHHHHHHHHHhcc-CcEEEEEeccCCccc--------cccccCCCCCCCCCcEEEEecCchhhhhccc-----
Q 048126 209 SWKNGSLEDKASDILRILSK-KKFLLLLDDIWERVD--------LTKVGVPFPDPENKSKIVFTTRFLEICGAMK----- 274 (863)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~--------~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~----- 274 (863)
...+.........+.++. +-=+||+|++.+.-. .......+...-.=+-|.|-|+...-+-..+
T Consensus 126 --~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 126 --PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 233444444455555554 445899999986311 1111111111112244555555432211111
Q ss_pred ccceEeecCCChH-HHHHHHHHHhccc--ccCCCCChHHHHHHHHHHhCCchhHHH
Q 048126 275 AHEFLKVECLGPE-DAWRLFRENLRRD--VLDNHPDIPELARSVAKEYAGLPLALI 327 (863)
Q Consensus 275 ~~~~~~l~~L~~~-e~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPlai~ 327 (863)
-..++.++....+ |...|+......- ...++-...+++..|...++|+.=-+.
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1235566665554 4444443322111 112233457889999999999864443
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00022 Score=84.68 Aligned_cols=190 Identities=12% Similarity=0.122 Sum_probs=106.2
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH--
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR-- 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-- 202 (863)
.++||.+..++.|.+++..+++ +.+.++|+.|+||||+|+.+++..... .... ...++.....+.|...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~-------~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPT-------STPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCC-------CCCCcccHHHHHHHcCCC
Confidence 4579999999999999987665 467899999999999999998887211 1110 0001111111111111
Q ss_pred --hCCC-CccccCCChhHHHHHHHHH-----hccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEec-Cchhhhh
Q 048126 203 --IGFL-DESWKNGSLEDKASDILRI-----LSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTT-RFLEICG 271 (863)
Q Consensus 203 --l~~~-~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~v~~ 271 (863)
.... .+......+++.. .+.+. ..+++-++|||+++.. .....+...+......+.+|++| ....+..
T Consensus 87 ~~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 0000 0000011122221 12221 2345568899999864 23444444444333455566555 4444433
Q ss_pred c-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHH
Q 048126 272 A-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALI 327 (863)
Q Consensus 272 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 327 (863)
. ......|++..++.++..+++.+.+...... --.+....|++.++|.+..+.
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2 2234578999999999998888766443211 123456789999999874433
No 124
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=8.9e-05 Score=82.65 Aligned_cols=168 Identities=13% Similarity=0.128 Sum_probs=102.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL 226 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (863)
...+.|+|..|+|||+|++.+++.... ...-..+++++ ..++...+...++... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 356889999999999999999996521 11122445654 3456666666553210 1223344444
Q ss_pred ccCcEEEEEeccCCcc---cc-ccccCCCCC-CCCCcEEEEecCch---------hhhhcccccceEeecCCChHHHHHH
Q 048126 227 SKKKFLLLLDDIWERV---DL-TKVGVPFPD-PENKSKIVFTTRFL---------EICGAMKAHEFLKVECLGPEDAWRL 292 (863)
Q Consensus 227 ~~kr~LlVlDdv~~~~---~~-~~~~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l 292 (863)
+ +.-+||+||+.... .+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 3 34488899997532 11 222222211 12345688887643 2233344455788999999999999
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHH
Q 048126 293 FRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRA 332 (863)
Q Consensus 293 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 332 (863)
+.+.+...... ..--+++..-|++.++|.|-.+..+...
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 99987643211 1233678899999999999877665533
No 125
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.91 E-value=0.00014 Score=79.96 Aligned_cols=169 Identities=20% Similarity=0.300 Sum_probs=96.1
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
+.+.|++..++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 3467999999999887631 235668899999999999999999987 222 222221
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh-ccCcEEEEEeccCCcc----------c------cccccCCCC--C
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL-SKKKFLLLLDDIWERV----------D------LTKVGVPFP--D 253 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~------~~~~~~~l~--~ 253 (863)
..+.. .. .... ......+.+.. ...+.+|++||++... + +..+...+. .
T Consensus 199 ~~l~~----~~-------~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELVQ----KF-------IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHhH----hh-------ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 11111 11 0011 11222222222 3467899999997521 0 111111111 1
Q ss_pred CCCCcEEEEecCchhhhh-c-c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc
Q 048126 254 PENKSKIVFTTRFLEICG-A-M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 254 ~~~gs~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 322 (863)
...+..||.||....... . . .-+..+.++..+.++-.++|+..+.........+ ...+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 123566777776543311 1 1 1245689999999999999998775443222223 35566666664
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00032 Score=81.28 Aligned_cols=194 Identities=12% Similarity=0.128 Sum_probs=111.0
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.++||-+..++.|..++..+++ +.+.++|+.|+||||+|+.+++... -..... ....++.....+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4589999999999998877654 4668999999999999999998761 100000 0112222333344433221
Q ss_pred CCCccc---cCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCc-hhhhhc-
Q 048126 205 FLDESW---KNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRF-LEICGA- 272 (863)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~- 272 (863)
...-.. .....++ +..+.+.+ .+++-++|+|+++.. .....+...+......+.+|++|.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110000 0111222 12222222 245668999999754 2344444334333345666665543 333221
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
......+.+..++.++....+...+...... --.+.+..|++.++|.+..+...-
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1223467889999999998888776543311 124568899999999886555443
No 127
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=3.6e-06 Score=83.37 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=38.4
Q ss_pred eEEccCCcccccc--chhhhcCCCccEEEccCCCcc--ccCCccccccCCCCeEEccCCCcc----ccchhhhcCCCCCE
Q 048126 520 SLFLSDNSLKMIA--GDFFQFMPSLRVFNMSNNHLL--WKLPSGISTLVSLEHLDLSGTAIT----HLPIELQKLVNLKC 591 (863)
Q Consensus 520 ~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~L~~~~l~----~lp~~~~~l~~L~~ 591 (863)
.|.+.++.+.... ..+-..+.+++.|||.+|.+. .++..-+.+|++|++|+|+.|.+. .+| -.+.+|++
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~ 125 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRV 125 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEE
Confidence 4445555444332 222345666777777777332 123333456666777777666543 233 23445566
Q ss_pred EecCCc
Q 048126 592 LNLEYM 597 (863)
Q Consensus 592 L~l~~~ 597 (863)
|-|.++
T Consensus 126 lVLNgT 131 (418)
T KOG2982|consen 126 LVLNGT 131 (418)
T ss_pred EEEcCC
Confidence 555553
No 128
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=1.2e-06 Score=97.78 Aligned_cols=120 Identities=30% Similarity=0.416 Sum_probs=61.3
Q ss_pred EEeccccccc-cccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCcc
Q 048126 499 MSLMKNKIEN-LSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAIT 577 (863)
Q Consensus 499 L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~ 577 (863)
+++..|.+.. ......+.+|..|++.+|.+..+... +..+++|++|+|++| .++.+. .+..+..|+.|++++|.|.
T Consensus 77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred hccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheeccCcch
Confidence 3344444443 22245555666666666655555432 445666666666666 333332 3455555666666666665
Q ss_pred ccchhhhcCCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeecccc
Q 048126 578 HLPIELQKLVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 578 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~ 624 (863)
.++ .+..+++|+.+++++| .+..++. . ...+.+|+.+.+.++.+
T Consensus 154 ~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 154 DIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred hcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 554 3344566666666665 2333333 1 24555555555555443
No 129
>CHL00181 cbbX CbbX; Provisional
Probab=97.89 E-value=0.00025 Score=74.19 Aligned_cols=133 Identities=13% Similarity=0.150 Sum_probs=71.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhcc
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSK 228 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 228 (863)
.+.++|++|+||||+|+.+++.... ...-...-|+.++.. .+..... + .........+.+.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~~----~l~~~~~---g--------~~~~~~~~~l~~a--- 121 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTRD----DLVGQYI---G--------HTAPKTKEVLKKA--- 121 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecHH----HHHHHHh---c--------cchHHHHHHHHHc---
Confidence 4788999999999999999886511 111111124444421 2221111 1 0111111222221
Q ss_pred CcEEEEEeccCCc-----------cccccccCCCCCCCCCcEEEEecCchhhhhcc--------cccceEeecCCChHHH
Q 048126 229 KKFLLLLDDIWER-----------VDLTKVGVPFPDPENKSKIVFTTRFLEICGAM--------KAHEFLKVECLGPEDA 289 (863)
Q Consensus 229 kr~LlVlDdv~~~-----------~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~ 289 (863)
..-+|++|++... .....+...+.....+.+||+++....+.... .....+.+++++.+|-
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2348999999642 11122223333344557777887654332111 1234688999999999
Q ss_pred HHHHHHHhccc
Q 048126 290 WRLFRENLRRD 300 (863)
Q Consensus 290 ~~lf~~~~~~~ 300 (863)
.+++...+...
T Consensus 202 ~~I~~~~l~~~ 212 (287)
T CHL00181 202 LQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHh
Confidence 99988877543
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00044 Score=77.67 Aligned_cols=194 Identities=12% Similarity=0.110 Sum_probs=107.2
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.++||-+..++.+...+..++.. ++.++|+.|+||||+|+.+++..-. ....+. .++......+.+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c-~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC-EQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC-CCCCCC-------CCCcccHHHHHHhhcCC
Confidence 45799999999999999877655 5689999999999999998877511 000000 00011111111111000
Q ss_pred CCC---ccccCCChhHHHHHHHH----HhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCch-hhhh-cc
Q 048126 205 FLD---ESWKNGSLEDKASDILR----ILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFL-EICG-AM 273 (863)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~-~~ 273 (863)
... +.......++....+.. -..+++-++|+|+++... ....+...+......+++|++|.+. .+.. ..
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 000 00000112222222211 011355688999997642 2333433333334456666666553 2211 11
Q ss_pred cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 274 KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
.....+++.+++.++....+.+.+..... .--.+.+..|++.++|.+.-+..+.
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 12357899999999999998877654331 1124677899999999886555543
No 131
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=4.1e-05 Score=81.91 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=41.6
Q ss_pred hhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC-CccccchhhhcCCCCCEEecCCccccCCCcH
Q 048126 536 FQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT-AITHLPIELQKLVNLKCLNLEYMYNLNQFPR 605 (863)
Q Consensus 536 ~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 605 (863)
+..+++++.|++++| .+..+|. -..+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 445677888888877 5666662 1235777777776 6667775542 5777777777755555553
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00034 Score=80.86 Aligned_cols=180 Identities=13% Similarity=0.181 Sum_probs=108.4
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcC--------------------CCCCCCEEEEE
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLG--------------------APNDFDVVIWV 184 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~F~~~~wv 184 (863)
.++||-+..++.+.+++..+++. .+.++|+.|+||||+|+.++..... ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 45799999999999999877654 5789999999999999998886510 0113332 222
Q ss_pred EeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEE
Q 048126 185 VVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVF 262 (863)
Q Consensus 185 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv 262 (863)
..+....+.++. .++.++.... ..+++=++|+|++.... .+..+...+.....++.+|+
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 222222222221 2222221110 12345588999987642 34455444444444566655
Q ss_pred -ecCchhhhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 263 -TTRFLEICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 263 -TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
||+...+... ......+++.+++.++....+.+.+...... --.+.+..|++.++|..--+..
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 4454444332 2234578999999999999988876543311 1235678899999997654433
No 133
>PF14516 AAA_35: AAA-like domain
Probab=97.86 E-value=0.0013 Score=70.56 Aligned_cols=199 Identities=15% Similarity=0.143 Sum_probs=118.7
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-----cCHHHHH----
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-----LQLEKIQ---- 196 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~---- 196 (863)
+..|.|...-+++.+.+.++ -..+.|.|+-.+|||+|...+.+... +..+ .++++++..- .+....+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~--~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ--QQGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH--HCCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 34589997777788777653 35899999999999999999998882 2344 4557776542 2345444
Q ss_pred HHHHHHhCCCCc---ccc--CCChhHHHHHHHHHh-c--cCcEEEEEeccCCcccc----cccc----------CCCCCC
Q 048126 197 EKIGRRIGFLDE---SWK--NGSLEDKASDILRIL-S--KKKFLLLLDDIWERVDL----TKVG----------VPFPDP 254 (863)
Q Consensus 197 ~~i~~~l~~~~~---~~~--~~~~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~~~----~~~~----------~~l~~~ 254 (863)
..+.++++.... .+. ..........+.+.+ + +++.+|++|+|+..... ..+. ...+.-
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 444555554421 011 112223333444432 2 58999999999753211 1111 100000
Q ss_pred CCCcEEEEec-Cchhhhhc----ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 255 ENKSKIVFTT-RFLEICGA----MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 255 ~~gs~IivTt-R~~~v~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
..-+-|++.+ +....... ......+.|++++.+|...|+.+.-..-. ....++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHHH
Confidence 0111122222 11111111 12334789999999999999987632211 223899999999999999999
Q ss_pred HHHhcC
Q 048126 330 GRAMTC 335 (863)
Q Consensus 330 ~~~l~~ 335 (863)
+..+..
T Consensus 240 ~~~l~~ 245 (331)
T PF14516_consen 240 CYLLVE 245 (331)
T ss_pred HHHHHH
Confidence 999975
No 134
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.86 E-value=0.00013 Score=79.22 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 205 (863)
.++++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++..+..++...+... +.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 4568889999999998874 3577789999999999999999987 445578889999999988877665433110 00
Q ss_pred CCccccCCChhHHHHHHHHHhc--cCcEEEEEeccCCc
Q 048126 206 LDESWKNGSLEDKASDILRILS--KKKFLLLLDDIWER 241 (863)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~ 241 (863)
. ....+ .-..+.+..... +++++||+|++...
T Consensus 251 g---y~~~~-G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 G---FRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred C---eEecC-chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 00000 011122222222 46899999999754
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00036 Score=80.58 Aligned_cols=187 Identities=11% Similarity=0.131 Sum_probs=104.8
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..+||-+..++.+.+++..+++ +.+.++|+.|+||||+|+.++...- ..+.. ..+ ......... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln--C~~~~-~~~-------~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN--CSHKT-DLL-------EPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc--ccccC-CCC-------CchhHHHHh---hc
Confidence 4579999999999999987654 4667899999999999999988751 11100 000 000000000 00
Q ss_pred CCCc-----cccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEE-EecCchhhhh
Q 048126 205 FLDE-----SWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIV-FTTRFLEICG 271 (863)
Q Consensus 205 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Ii-vTtR~~~v~~ 271 (863)
...+ .......++ ++.+.+.+ .+++-++|+|+++.. ..+..+...+........+| +|++...+..
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0000 000011121 22222222 246668999999753 23444443333333344444 5555544432
Q ss_pred c-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 272 A-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 272 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
. ......+.+.+++.++....+...+...... --.+.+..|++.++|.+.-+..+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2223578999999999998888765433211 12355788999999977544443
No 136
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00045 Score=77.15 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=104.0
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCC--------------------CCCCEEEEE
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP--------------------NDFDVVIWV 184 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~F~~~~wv 184 (863)
.++||.+..++.+.+++..++. +.+.++|+.|+||||+|+.+++...... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4589999999999999987665 5678999999999999999988762100 0111 1111
Q ss_pred EeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEE
Q 048126 185 VVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVF 262 (863)
Q Consensus 185 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv 262 (863)
.......+.++ +++.+.+.. ....+.+-++|+|+++.. .....+...+........+|+
T Consensus 96 ~g~~~~gid~i-r~i~~~l~~------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVLF------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eccccCCHHHH-HHHHHHHHh------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 11011111111 111111100 011256678899998653 223334333333334566666
Q ss_pred ecC-chhhhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh-HHHHH
Q 048126 263 TTR-FLEICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL-ALITI 329 (863)
Q Consensus 263 TtR-~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 329 (863)
+|. ...+... ......+++.++++++....+.+.+...... --.+.+..|++.++|.+- |+..+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 553 3333221 1223468999999999988888766533211 224567889999999764 44333
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00057 Score=76.81 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=104.1
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCC--CC----------------CCCEEEEEEe
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGA--PN----------------DFDVVIWVVV 186 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--~~----------------~F~~~~wv~~ 186 (863)
..++|-+..+..+.+++..+++. .+.++|+.|+||||+|+.++...... .. .|...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 45799999999999999876554 56789999999999999998875110 00 0111112211
Q ss_pred CCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcE
Q 048126 187 SKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSK 259 (863)
Q Consensus 187 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~ 259 (863)
+.. ...++ ++.+.+.. .+++-++|+|+++.. .....+...+........
T Consensus 96 as~-----------------------~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 96 ASN-----------------------RGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred ccC-----------------------CCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111 11111 11222222 245669999999754 223344333333333455
Q ss_pred EEEec-Cchhhhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 260 IVFTT-RFLEICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 260 IivTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
+|++| +...+... ......+.+.+++.++....+.+.+...... --.+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 43333221 1223468899999999998888876543311 124567788899999776554444
No 138
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.82 E-value=3.1e-06 Score=94.46 Aligned_cols=213 Identities=23% Similarity=0.247 Sum_probs=135.2
Q ss_pred CCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEEe
Q 048126 514 TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLN 593 (863)
Q Consensus 514 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 593 (863)
.+..+..+.+..|.+..+-.. ++.+++|.+|++.+| .+..+...+..+++|++|++++|.|+.+. .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 456667777888877663332 678999999999999 55566555888999999999999999886 677888899999
Q ss_pred cCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHH--HcCCccCceEEEEEcChHHHHHHhhhhhhhhcceee
Q 048126 594 LEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEE--LMGMKHLMALTITLKSWEALQELLISQELQRCTQSL 671 (863)
Q Consensus 594 l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~--l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 671 (863)
+.+| .+..++. +..+.+|+.+++.++.+.. +.. +..+.+|+.+.+..+....+..+.... .+..+
T Consensus 147 l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~----~l~~~ 213 (414)
T KOG0531|consen 147 LSGN-LISDISG--LESLKSLKLLDLSYNRIVD------IENDELSELISLEELDLGGNSIREIEGLDLLK----KLVLL 213 (414)
T ss_pred eccC-cchhccC--CccchhhhcccCCcchhhh------hhhhhhhhccchHHHhccCCchhcccchHHHH----HHHHh
Confidence 9998 5677765 6668999999998887652 223 577778888888777665544332221 22222
Q ss_pred eeccccCCCcccccchhhcCC--CceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCchhhccCCC
Q 048126 672 FLRCFNDSKSLDIFCLACLHN--LNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSL 749 (863)
Q Consensus 672 ~l~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L 749 (863)
.+... ....+..+..+.. |+.+++.+++.... . .. ...+.++..|++.+. ++..+..+...+.+
T Consensus 214 ~l~~n---~i~~~~~l~~~~~~~L~~l~l~~n~i~~~-~-~~--------~~~~~~l~~l~~~~n-~~~~~~~~~~~~~~ 279 (414)
T KOG0531|consen 214 SLLDN---KISKLEGLNELVMLHLRELYLSGNRISRS-P-EG--------LENLKNLPVLDLSSN-RISNLEGLERLPKL 279 (414)
T ss_pred hcccc---cceeccCcccchhHHHHHHhcccCccccc-c-cc--------ccccccccccchhhc-cccccccccccchH
Confidence 22221 1111112222233 78888887655431 0 11 123677777777764 44444433344444
Q ss_pred cEEEEec
Q 048126 750 KSIVVLS 756 (863)
Q Consensus 750 ~~L~l~~ 756 (863)
..+....
T Consensus 280 ~~~~~~~ 286 (414)
T KOG0531|consen 280 SELWLND 286 (414)
T ss_pred HHhccCc
Confidence 4444433
No 139
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.80 E-value=0.00033 Score=72.52 Aligned_cols=163 Identities=20% Similarity=0.244 Sum_probs=104.8
Q ss_pred CCccchhHHHHHHHHHhcCCC---ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQ---VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
+.+.+|+..+..+..++.+.. ++.|.|+|..|.|||.+.+++.+.. .. ..+|+++-+.++.+.++..|+.+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHHH
Confidence 456799999999999997643 3456899999999999999999886 22 25899999999999999999999
Q ss_pred hCCCC-cccc-CCChh---HHHHHHHH--Hhc--cCcEEEEEeccCCccccccc--------cCCCCCCCCCcEEEEecC
Q 048126 203 IGFLD-ESWK-NGSLE---DKASDILR--ILS--KKKFLLLLDDIWERVDLTKV--------GVPFPDPENKSKIVFTTR 265 (863)
Q Consensus 203 l~~~~-~~~~-~~~~~---~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~--------~~~l~~~~~gs~IivTtR 265 (863)
.+..+ +... ..+.+ +....+.+ ... ++.++||||+++...+.+.+ -..+ +.+...|+...-
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~--~~~~i~iils~~ 157 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL--NEPTIVIILSAP 157 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh--CCCceEEEEecc
Confidence 86322 1111 11111 12222222 112 46899999999865443332 1111 123343433332
Q ss_pred c-hhh-hhcccccc--eEeecCCChHHHHHHHHHH
Q 048126 266 F-LEI-CGAMKAHE--FLKVECLGPEDAWRLFREN 296 (863)
Q Consensus 266 ~-~~v-~~~~~~~~--~~~l~~L~~~e~~~lf~~~ 296 (863)
. +.. ...++... ++..+.-+.+|..+++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 222 22244433 4677899999999998754
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00076 Score=78.01 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=109.5
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++..- ....+.. ....++.....+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 4579999999999999987654 5778999999999999999998862 1111100 0112222333333333222
Q ss_pred CCC---ccccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCc-hhhhhcc
Q 048126 205 FLD---ESWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRF-LEICGAM 273 (863)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~~ 273 (863)
... ........++. +.+.+.. .+++-++|+|+++.. ..+..+...+........+|++|.+ ..+....
T Consensus 90 ~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 110 00011112222 2222222 245568899999764 2344444444333344555544443 3332221
Q ss_pred -cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 274 -KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 274 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
.....+.+..++.++....+...+...... --.+.+..|++.++|.+..+..+-
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~---is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE---IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123467888999999888887766543211 113567889999999876554443
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.79 E-value=0.00016 Score=86.27 Aligned_cols=155 Identities=16% Similarity=0.286 Sum_probs=88.6
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCC--CCCC-CEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGA--PNDF-DVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F-~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
+++|||+.+++++++.|......-+.++|++|+|||++|+.++++.... ...+ +..+|.. +...+. ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~----a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL----AG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh----hh
Confidence 4689999999999999977666667799999999999999999987211 1111 2333321 111111 10
Q ss_pred hCCCCccccCCChhHHHHHHHHHh-ccCcEEEEEeccCCcc----------ccccccCCCCCCCCC-cEEEEecCchhhh
Q 048126 203 IGFLDESWKNGSLEDKASDILRIL-SKKKFLLLLDDIWERV----------DLTKVGVPFPDPENK-SKIVFTTRFLEIC 270 (863)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~~~~~~~l~~~~~g-s~IivTtR~~~v~ 270 (863)
.. .....++....+.+.+ +.++.+|++|+++... +...+..+ .-..| -++|-+|...+..
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~--~l~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKP--ALSSGKLRCIGSTTYEEYK 324 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHH--HHhCCCeEEEEecCHHHHH
Confidence 00 0112233333333333 3468899999997431 11112111 11223 3455444432211
Q ss_pred -------hcccccceEeecCCChHHHHHHHHHHh
Q 048126 271 -------GAMKAHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 271 -------~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
....-...+.++.++.++..++++...
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111123468999999999999998654
No 142
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.9e-05 Score=55.21 Aligned_cols=39 Identities=46% Similarity=0.626 Sum_probs=21.6
Q ss_pred CCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCc
Q 048126 565 SLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFP 604 (863)
Q Consensus 565 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp 604 (863)
+|++|++++|+|+.+|..+++|++|++|++++| .++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 456666666666666655666666666666665 344443
No 143
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.78 E-value=0.00016 Score=72.75 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=109.8
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEE-EEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIW-VVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~~i~~~l~ 204 (863)
.+++|-+..+..+.+.+..........+|++|.|||+-|..++... --.+-|.+++. .++|..-.+.-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-----
Confidence 4578999999999999988778899999999999999999998876 22345655442 3344433222110000
Q ss_pred CCCccccCCChhHHHHHHHHHh--ccCc-EEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCc-hhhhhc-ccccc
Q 048126 205 FLDESWKNGSLEDKASDILRIL--SKKK-FLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRF-LEICGA-MKAHE 277 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~~ 277 (863)
.+...+........ .-++ -.+|||+++.. +.|..+...+......++.|+.+.. ..+... ..-..
T Consensus 110 --------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 110 --------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred --------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 00000000000000 0123 37888999864 5687776655554555665544443 222111 11123
Q ss_pred eEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 278 FLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 278 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
.|..++|.+++...-++..+.......+ .+..+.|++.++|--
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 5889999999999988888765543222 456788999998853
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.76 E-value=0.00033 Score=84.23 Aligned_cols=178 Identities=16% Similarity=0.191 Sum_probs=97.0
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCC--CC-CCCEEEE-EEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGA--PN-DFDVVIW-VVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-~F~~~~w-v~~s~~~~~~~~~~~i~~ 201 (863)
+++|||+.++.++++.|......-+.++|.+|+||||+|+.++++.... .. -.+..+| +.++. + .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l----~- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L----Q- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h----h-
Confidence 5689999999999999887666667799999999999999999986210 00 1122232 22211 0 0
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhc--cCcEEEEEeccCCcc---------ccccccCCCCCCCCC-cEEEEecCchhh
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILS--KKKFLLLLDDIWERV---------DLTKVGVPFPDPENK-SKIVFTTRFLEI 269 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---------~~~~~~~~l~~~~~g-s~IivTtR~~~v 269 (863)
... . .....+.....+.+.++ +++.+|++|+++... +...+..+ .-..| -++|-||...+.
T Consensus 256 ---ag~-~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 256 ---AGA-S-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--ALARGELRTIAATTWAEY 328 (852)
T ss_pred ---ccc-c-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--HhhCCCeEEEEecCHHHH
Confidence 000 0 01111222222222222 468999999987532 11112222 22233 556666654332
Q ss_pred hh-------cccccceEeecCCChHHHHHHHHHHhcccccCCC-CChHHHHHHHHHHhCC
Q 048126 270 CG-------AMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNH-PDIPELARSVAKEYAG 321 (863)
Q Consensus 270 ~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~g 321 (863)
.. ...-...+.+++++.+++.+++......-..... .--.+....+++.+.+
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 11 1112347899999999999997644322110011 1123445666666654
No 145
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00031 Score=78.32 Aligned_cols=157 Identities=22% Similarity=0.212 Sum_probs=94.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD-VVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
..-+.|+|..|+|||+||+.+++... +.+.+ .++|++. .++...+...+... .. ..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~----~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL----NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH----HHHHHH
Confidence 45699999999999999999999872 22223 4667753 34555555554321 11 123333
Q ss_pred hccCcEEEEEeccCCccc---c-ccccCCCCC-CCCCcEEEEecC-chhh--------hhcccccceEeecCCChHHHHH
Q 048126 226 LSKKKFLLLLDDIWERVD---L-TKVGVPFPD-PENKSKIVFTTR-FLEI--------CGAMKAHEFLKVECLGPEDAWR 291 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~IivTtR-~~~v--------~~~~~~~~~~~l~~L~~~e~~~ 291 (863)
...+.-+|++||++.... + ..+...+.. ...|..||+||. ...- ...+.....+.+++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 334456899999974311 1 122111110 123456888885 3221 2223344578899999999999
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCchhH
Q 048126 292 LFRENLRRDVLDNHPDIPELARSVAKEYAGLPLA 325 (863)
Q Consensus 292 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 325 (863)
++++.+...... --+++..-|++.+.|.--.
T Consensus 271 IL~~~~~~~~~~---l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 271 IARKMLEIEHGE---LPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHHHhcCCC---CCHHHHHHHHhccccCHHH
Confidence 999887643211 1256788888888775433
No 146
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.73 E-value=1.2e-06 Score=96.53 Aligned_cols=129 Identities=26% Similarity=0.340 Sum_probs=93.4
Q ss_pred ccccceEEEEecccccccccc-CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeE
Q 048126 491 QNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (863)
Q Consensus 491 ~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (863)
..|.++...++++|.+..+.. +.-++.|+.|+|++|+++... ++..|++|++|||++| .+..+|.--..=.+|+.|
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheee
Confidence 345677778888887766533 356788999999999887765 5888999999999999 555666422222348999
Q ss_pred EccCCCccccchhhhcCCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeecccc
Q 048126 570 DLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 570 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~ 624 (863)
++++|.+++|- ++.+|.+|++||+++| .+..... ..++.|..|+.|++.+|.+
T Consensus 238 ~lrnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eecccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99999888874 7889999999999887 3332221 1256778888888888765
No 147
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=3e-05 Score=55.13 Aligned_cols=40 Identities=35% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCccEEEccCCCccccCCccccccCCCCeEEccCCCccccc
Q 048126 540 PSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLP 580 (863)
Q Consensus 540 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp 580 (863)
++|++|++++| .+..+|..+++|++|++|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35666666666 34456655666777777777776666554
No 148
>PRK06620 hypothetical protein; Validated
Probab=97.70 E-value=0.0002 Score=71.51 Aligned_cols=132 Identities=14% Similarity=0.028 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhc
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILS 227 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (863)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+.. + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~~-----------------------~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFFN-----------------------E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhhc-----------------------h-------hHH-
Confidence 568999999999999999988765 11 1221 00000 0 011
Q ss_pred cCcEEEEEeccCCccccccccCCCC-CCCCCcEEEEecCchh-------hhhcccccceEeecCCChHHHHHHHHHHhcc
Q 048126 228 KKKFLLLLDDIWERVDLTKVGVPFP-DPENKSKIVFTTRFLE-------ICGAMKAHEFLKVECLGPEDAWRLFRENLRR 299 (863)
Q Consensus 228 ~kr~LlVlDdv~~~~~~~~~~~~l~-~~~~gs~IivTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 299 (863)
+..-+|++||++...+ ..+...+. -...|..||+|++... ....+....++++++++.++-..++++.+..
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 1234788899974321 11111111 0134668999988533 2333444557999999999988888887653
Q ss_pred cccCCCCChHHHHHHHHHHhCCchh
Q 048126 300 DVLDNHPDIPELARSVAKEYAGLPL 324 (863)
Q Consensus 300 ~~~~~~~~~~~~~~~i~~~c~glPl 324 (863)
.... --+++..-|++.+.|---
T Consensus 163 ~~l~---l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 163 SSVT---ISRQIIDFLLVNLPREYS 184 (214)
T ss_pred cCCC---CCHHHHHHHHHHccCCHH
Confidence 2211 125667777777766543
No 149
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.70 E-value=0.00041 Score=77.20 Aligned_cols=158 Identities=22% Similarity=0.216 Sum_probs=92.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL 226 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (863)
...+.|+|..|+|||+|++.+++... ....=..++|++. .++...+...+... .. ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHH
Confidence 45789999999999999999999872 1111124566643 33444454444211 11 2233333
Q ss_pred ccCcEEEEEeccCCccc---c-ccccCCCCC-CCCCcEEEEecCchh---------hhhcccccceEeecCCChHHHHHH
Q 048126 227 SKKKFLLLLDDIWERVD---L-TKVGVPFPD-PENKSKIVFTTRFLE---------ICGAMKAHEFLKVECLGPEDAWRL 292 (863)
Q Consensus 227 ~~kr~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 292 (863)
++ .-+||+||++.... + +.+...+.. ...|..||+|+.... +...+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 34888999975321 1 112111111 123456888776421 222333345688999999999999
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCchhHH
Q 048126 293 FRENLRRDVLDNHPDIPELARSVAKEYAGLPLAL 326 (863)
Q Consensus 293 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 326 (863)
+.+.+...... --+++...|++.+.|..-.+
T Consensus 277 l~~~~~~~~~~---l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 277 LQKKAEEEGLE---LPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHH
Confidence 99887654311 12567788888888766543
No 150
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00013 Score=78.07 Aligned_cols=144 Identities=16% Similarity=0.114 Sum_probs=78.4
Q ss_pred HHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceecc
Q 048126 632 LVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTV 711 (863)
Q Consensus 632 ~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~ 711 (863)
....+..+.++..|+++.+....++ .++.+|+.|.+.+|..++.++ ..+ .++|++|.+++|..+..+
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sLP------~LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sL---- 110 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESLP------VLPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGL---- 110 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcccC------CCCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccccccc----
Confidence 3444555677788888766554443 244577777777776654443 122 257777777777555422
Q ss_pred ccccccccccccCcccEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceecc
Q 048126 712 QRSSVNQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSL 791 (863)
Q Consensus 712 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l 791 (863)
+++|+.|++..+ .+..++. -.++|+.|.+.+++..... .....-.++|+.|.+
T Consensus 111 -----------P~sLe~L~L~~n-~~~~L~~--LPssLk~L~I~~~n~~~~~-------------~lp~~LPsSLk~L~I 163 (426)
T PRK15386 111 -----------PESVRSLEIKGS-ATDSIKN--VPNGLTSLSINSYNPENQA-------------RIDNLISPSLKTLSL 163 (426)
T ss_pred -----------ccccceEEeCCC-CCccccc--CcchHhheecccccccccc-------------ccccccCCcccEEEe
Confidence 345677776532 2222221 1256777776443211100 000112257888888
Q ss_pred CCCccccccccCCCCCCCcceEeecCC
Q 048126 792 ENLRNLCCINWEALAFPNLKEIRVEGC 818 (863)
Q Consensus 792 ~~~~~L~~i~~~~~~~p~L~~L~i~~C 818 (863)
.+|..+. ++.. -.++|+.|.+..+
T Consensus 164 s~c~~i~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 164 TGCSNII-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred cCCCccc-Cccc--ccccCcEEEeccc
Confidence 8887553 2211 1257888888664
No 151
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=3.3e-05 Score=90.00 Aligned_cols=128 Identities=20% Similarity=0.298 Sum_probs=81.6
Q ss_pred ceEEEEeccccccc--cc--cCCCCCccceEEccCCcccccc-chhhhcCCCccEEEccCCCccccCCccccccCCCCeE
Q 048126 495 NVRRMSLMKNKIEN--LS--ETPTCPHLLSLFLSDNSLKMIA-GDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (863)
Q Consensus 495 ~lr~L~l~~~~~~~--l~--~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (863)
+|++|++.+..... .+ -...+|+|++|.+.+-.+..-. ...+.++++|+.||+|++ .+..+ ..+++|++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHH
Confidence 78888887754321 11 1256788888888876443211 233567888888888888 45455 678888888888
Q ss_pred EccCCCccccc--hhhhcCCCCCEEecCCccccCCCcHH------HhhcCCCCcEEEeeccccc
Q 048126 570 DLSGTAITHLP--IELQKLVNLKCLNLEYMYNLNQFPRL------VMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 570 ~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~------~~~~L~~L~~L~l~~~~~~ 625 (863)
.+++-.+..-+ ..+.+|++|++||++...... -+.. ....|++|+.|+.+++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 88876665432 356778888888888753322 2211 0133677777777766554
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.00056 Score=76.06 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=88.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL 226 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (863)
...+.|+|+.|+|||+|++.+++... .....++|++ ...+...+...+... . ...+++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35788999999999999999999872 1223356664 234444555444311 1 12233333
Q ss_pred ccCcEEEEEeccCCccc--c--ccccCCCCC-CCCCcEEEEecCch---------hhhhcccccceEeecCCChHHHHHH
Q 048126 227 SKKKFLLLLDDIWERVD--L--TKVGVPFPD-PENKSKIVFTTRFL---------EICGAMKAHEFLKVECLGPEDAWRL 292 (863)
Q Consensus 227 ~~kr~LlVlDdv~~~~~--~--~~~~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l 292 (863)
+ +.-+|++||+..... + +.+...+.. ...|..||+||... .+...+.....+.+.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 344888899875422 1 122111110 11355688888542 1223333446789999999999999
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCc
Q 048126 293 FRENLRRDVLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 293 f~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 322 (863)
+.+.+......- -+++..-|+..+.|.
T Consensus 280 L~~k~~~~~~~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 280 LERKAEALSIRI---EETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCC
Confidence 998876533111 245556566666643
No 153
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.66 E-value=0.00033 Score=77.03 Aligned_cols=169 Identities=16% Similarity=0.184 Sum_probs=94.1
Q ss_pred CccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 127 PTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.|..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 357899999988887631 134568899999999999999999986 3333 2221111
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc----------------cccccCCCC--CCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD----------------LTKVGVPFP--DPE 255 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~~~l~--~~~ 255 (863)
+. ... .......+...+.....+.+.+|+||+++.... ...+...+. ...
T Consensus 253 -L~----~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 -LI----QKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred -hh----hhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 11 111 001111122222223345678999999853210 001111111 112
Q ss_pred CCcEEEEecCchhhhhc--c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc
Q 048126 256 NKSKIVFTTRFLEICGA--M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 256 ~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 322 (863)
.+.+||+||...+.... . ..+..+.++..+.++-.++|..++.........++ ..++..+.|.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~ 388 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDEL 388 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCC
Confidence 35678888876544221 1 23457889999999999999977654332222233 4445555544
No 154
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0018 Score=74.16 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=107.8
Q ss_pred CCccchhHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.++||-+..++.+..++..++.. .+.++|+.|+||||+|+.+++..- -...... .+++.....+.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~-------~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP-------MPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC-------CCCccchHHHHHHcCCC
Confidence 45899999999999999876554 678999999999999999998761 1111000 00000011111111100
Q ss_pred CCC---ccccCCChhHHHHHHHH-----HhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCc-hhhhhc-
Q 048126 205 FLD---ESWKNGSLEDKASDILR-----ILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRF-LEICGA- 272 (863)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~-----~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~- 272 (863)
... +.......++... +.+ -..+++-++|+|+++... .+..+...+........+|++|.. ..+...
T Consensus 88 ~dv~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 000 0000111222221 211 123466689999997642 344554444444455666665543 333221
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
......+++.+++.++-...+.+.+..... +--.+.+..|++.++|.+..+..+
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 122346889999999998888877644321 122466788999999987654443
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.64 E-value=0.00046 Score=77.78 Aligned_cols=158 Identities=20% Similarity=0.183 Sum_probs=93.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL 226 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (863)
...+.|+|..|+|||+||+.+++... ....--.++|++.. .+...+...+... .. ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~~-------~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRNN-------TM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHcC-------cH----HHHHHHH
Confidence 45789999999999999999999872 11112245666533 3334444444211 11 2233333
Q ss_pred ccCcEEEEEeccCCccc---c-ccccCCCCC-CCCCcEEEEecCchh---------hhhcccccceEeecCCChHHHHHH
Q 048126 227 SKKKFLLLLDDIWERVD---L-TKVGVPFPD-PENKSKIVFTTRFLE---------ICGAMKAHEFLKVECLGPEDAWRL 292 (863)
Q Consensus 227 ~~kr~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 292 (863)
+ +.-+||+||++.... + +.+...+.. ...|..||+||.... +...+.....+.+++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 344889999975311 1 122111110 113455888776532 223344445789999999999999
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCchhHH
Q 048126 293 FRENLRRDVLDNHPDIPELARSVAKEYAGLPLAL 326 (863)
Q Consensus 293 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 326 (863)
+++.+..... .--+++..-|++.+.|..-.+
T Consensus 289 l~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGI---DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHH
Confidence 9998764321 122567888888888876543
No 156
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.64 E-value=1.6e-05 Score=91.33 Aligned_cols=112 Identities=25% Similarity=0.241 Sum_probs=52.5
Q ss_pred CCCccceEEccCC-cccccc-chhhhcCCCccEEEccCC-CccccC----CccccccCCCCeEEccCCC-ccc--cchhh
Q 048126 514 TCPHLLSLFLSDN-SLKMIA-GDFFQFMPSLRVFNMSNN-HLLWKL----PSGISTLVSLEHLDLSGTA-ITH--LPIEL 583 (863)
Q Consensus 514 ~~~~L~~L~l~~~-~l~~~~-~~~~~~l~~L~~L~L~~~-~~~~~l----p~~i~~l~~L~~L~L~~~~-l~~--lp~~~ 583 (863)
.+++|+.|.+.++ .+.... ..+...+++|+.|+++++ ...... +.....+.+|+.|+++++. ++. +..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3677777777766 333211 233566777777777763 111111 1122344556666666654 331 11112
Q ss_pred hcCCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccc
Q 048126 584 QKLVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 584 ~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~ 625 (863)
..+++|++|.+.+|..++...- .+..++++|++|++..|...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2245566665555533222111 11234555555555555443
No 157
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.63 E-value=0.00064 Score=74.69 Aligned_cols=135 Identities=18% Similarity=0.178 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCcc
Q 048126 131 LESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLDES 209 (863)
Q Consensus 131 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~ 209 (863)
|..-..++.+.+..... ++.|+|+-++||||+++.+.... .+. .+++..-+.. +-..+ .+
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~d----------- 82 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-LD----------- 82 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-HH-----------
Confidence 34455566666554433 99999999999999997777765 222 5555432221 11111 11
Q ss_pred ccCCChhHHHHHHHHHhccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhh-----hc-ccccceEeecC
Q 048126 210 WKNGSLEDKASDILRILSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEIC-----GA-MKAHEFLKVEC 283 (863)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~-----~~-~~~~~~~~l~~ 283 (863)
....+.+.-..++..|+||.|....+|+.....+.+.++. +|++|+-+.... .. .|-...+.+.|
T Consensus 83 --------~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 83 --------LLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred --------HHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 1111111111277899999999999999887777666665 888888876552 21 12345689999
Q ss_pred CChHHHHHHH
Q 048126 284 LGPEDAWRLF 293 (863)
Q Consensus 284 L~~~e~~~lf 293 (863)
||..|...+-
T Consensus 154 lSF~Efl~~~ 163 (398)
T COG1373 154 LSFREFLKLK 163 (398)
T ss_pred CCHHHHHhhc
Confidence 9999987654
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=2.2e-05 Score=91.47 Aligned_cols=136 Identities=21% Similarity=0.190 Sum_probs=78.2
Q ss_pred CccceEEccCCc--cccccchhhhcCCCccEEEccCCCcc-ccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEE
Q 048126 516 PHLLSLFLSDNS--LKMIAGDFFQFMPSLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCL 592 (863)
Q Consensus 516 ~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 592 (863)
.+|+.|+++|.. ..+.+...-..+|.|+.|.+++-.+. +++-.-..++++|..||+|+|+++.+ .++.+|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567777777762 22333343455777888877775433 22333445677788888888877777 577777777777
Q ss_pred ecCCccccCCCcHHHhhcCCCCcEEEeeccccccCc--hhhHHHHHcCCccCceEEEEEcCh
Q 048126 593 NLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGG--HQFLVEELMGMKHLMALTITLKSW 652 (863)
Q Consensus 593 ~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~~L~l~~~~~ 652 (863)
.+.+-.......-..+-+|++|+.|+++........ .....+--..|++|+.|+.+....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 776532211111112456777777777765544331 011122233467777777765543
No 159
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.63 E-value=0.00079 Score=73.63 Aligned_cols=171 Identities=14% Similarity=0.174 Sum_probs=95.5
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
.++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+ ..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i--~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRV--VG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEE--eh----
Confidence 3467999888888876631 235678899999999999999999986 2333 122 11
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc------------c----cccccCCCC--CC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV------------D----LTKVGVPFP--DP 254 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~~~l~--~~ 254 (863)
..+.... ++ .....+...+.......+.+|++|+++... . +..+...+. ..
T Consensus 213 s~l~~k~---~g--------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SEFVQKY---LG--------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHHHHHh---cc--------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 1111110 11 111112222233334578999999986420 0 111111111 12
Q ss_pred CCCcEEEEecCchhhhh-c-c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 255 ENKSKIVFTTRFLEICG-A-M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 255 ~~gs~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
..+..||.||...+... . . .-+..+.++..+.++-.++|+..........+.+ ..++++.+.|.-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 24567888887644321 1 1 2345688998899998888887665433222223 345566665553
No 160
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=9.6e-06 Score=71.17 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=81.2
Q ss_pred eEEEEecccccccc----ccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEc
Q 048126 496 VRRMSLMKNKIENL----SETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (863)
Q Consensus 496 lr~L~l~~~~~~~l----~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (863)
+..++++++.+..+ ........|...+|++|.++.+|+.+-..++.+..|+|++| -+..+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 33445555544322 22356667888888888888888887777788888888888 56688888888888888888
Q ss_pred cCCCccccchhhhcCCCCCEEecCCccccCCCcHH
Q 048126 572 SGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRL 606 (863)
Q Consensus 572 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 606 (863)
+.|.+...|..+..|.+|-.|+..++ ....+|-.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 88888888888888888888888776 44556544
No 161
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0011 Score=76.36 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=104.5
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.++||.+..++.|.+++..+++ +.+.++|+.|+||||+|+.+++..-. ....+ ...++.....+.|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 5689999999999999987765 46689999999999999999887511 11100 001111111111111000
Q ss_pred CCC---ccccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEE-ecCchhhhhc-
Q 048126 205 FLD---ESWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVF-TTRFLEICGA- 272 (863)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv-TtR~~~v~~~- 272 (863)
... +.......++ ++.+.+.+ .+++-++|+|+++... ....+...+......+.+|+ ||....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 000 0000111111 12222222 2345588899997542 23344333333334555554 5544444322
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch-hHHHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP-LALITI 329 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~ 329 (863)
......+.+.+++.++....+...+...... --.+....|++.++|.. .|+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2223467889999999888887765443211 12456788899999865 444444
No 162
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0026 Score=73.14 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=105.1
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
+.+||.+..++.+.+++..++. +.+.++|+.|+||||+|+.++..... ...-+ ..+++.....+.+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c-~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC-LNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 5689999999999999987654 45678999999999999999877511 11000 111222222222221111
Q ss_pred CCCccc---cCCChhHHHHHHHHH-----hccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEE-ecCchhhhhc-
Q 048126 205 FLDESW---KNGSLEDKASDILRI-----LSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVF-TTRFLEICGA- 272 (863)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv-TtR~~~v~~~- 272 (863)
...-.. .....+ .+..+.+. ..+++-++|+|+++.. ..+..+...+........+|+ ||....+...
T Consensus 88 ~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 000000 011111 12222222 1345668899999754 234444433333333444554 4444433221
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALI 327 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 327 (863)
......+.+.+++.++....+...+...... --.+.+..|++.++|.+..+.
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~---i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIE---YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 1223467889999999988888776543211 124567888999988775444
No 163
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.54 E-value=0.0032 Score=62.47 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=37.7
Q ss_pred CCccchhHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLG----EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.++|.+..++.|++-.. .....-+-+||..|+|||++++++.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 568999999988877543 3345567789999999999999999987
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.52 E-value=0.00076 Score=81.50 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=41.2
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+++|||+.++.++++.|......-+.++|.+|+|||++|+.++.+.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999987666677799999999999999999987
No 165
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0019 Score=68.75 Aligned_cols=167 Identities=11% Similarity=0.079 Sum_probs=88.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC-----cc-ccCCChhHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLD-----ES-WKNGSLEDKAS 220 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~-~~~~~~~~~~~ 220 (863)
.+.+.++|+.|+||||+|+.++....-. ...+ ...++.....+.+...-.... +. .....+++..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~-~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR- 92 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCE-APQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR- 92 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCC-CCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH-
Confidence 4578899999999999999998876211 0000 001111111111111000000 00 0011122222
Q ss_pred HHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCchh-hhhc-ccccceEeecCCChHHHHH
Q 048126 221 DILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFLE-ICGA-MKAHEFLKVECLGPEDAWR 291 (863)
Q Consensus 221 ~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~ 291 (863)
.+.+.+ .+++-++|+|+++.. .....+...+.....++.+|+||.+.. +... ..-...+.+.+++.+++.+
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 222222 233445577999764 334444333433345677777777653 3222 2223468999999999999
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 292 LFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 292 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
.+.+..... ..+.+..++..++|.|..+..+
T Consensus 173 ~L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 987653111 1334567889999999866554
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.49 E-value=0.00044 Score=83.67 Aligned_cols=155 Identities=17% Similarity=0.285 Sum_probs=88.3
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcC--CCCCC-CEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLG--APNDF-DVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
.+++||+++++++++.|......-+.++|++|+|||++|+.++.+... +.... +..+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 467999999999999998765556679999999999999999988721 11111 234442 1 222111 1
Q ss_pred hCCCCccccCCChhHHHHHHHHHh-ccCcEEEEEeccCCcc---------ccccccCCCCCCCCCcEEEEecCchhhhh-
Q 048126 203 IGFLDESWKNGSLEDKASDILRIL-SKKKFLLLLDDIWERV---------DLTKVGVPFPDPENKSKIVFTTRFLEICG- 271 (863)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~~~l~~~~~gs~IivTtR~~~v~~- 271 (863)
+.. .....++....+.+.+ ..++.+|++|+++... +...+..+.... ..-++|-+|...+...
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKH 322 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHH
Confidence 100 1112233333333333 3468999999996421 111222111111 2245665665544311
Q ss_pred ------cccccceEeecCCChHHHHHHHHHH
Q 048126 272 ------AMKAHEFLKVECLGPEDAWRLFREN 296 (863)
Q Consensus 272 ------~~~~~~~~~l~~L~~~e~~~lf~~~ 296 (863)
.......+.+...+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1112346788889999988887754
No 167
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.0016 Score=73.83 Aligned_cols=156 Identities=20% Similarity=0.175 Sum_probs=92.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL 226 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (863)
...+.|+|..|+|||.|++.+++...+ ...--.++|++. .++...+...+.. .. ...+.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHh
Confidence 356899999999999999999998721 111124566653 3444444443321 11 12233333
Q ss_pred ccCcEEEEEeccCCccc---cc-cccCCCCC-CCCCcEEEEecCch---------hhhhcccccceEeecCCChHHHHHH
Q 048126 227 SKKKFLLLLDDIWERVD---LT-KVGVPFPD-PENKSKIVFTTRFL---------EICGAMKAHEFLKVECLGPEDAWRL 292 (863)
Q Consensus 227 ~~kr~LlVlDdv~~~~~---~~-~~~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l 292 (863)
++ -=+|||||+..... |. .+...+.. ...|..|||||+.. .+...+...-++.++..+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 34788999975321 21 12111111 12355688888762 2334445566789999999999999
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCchh
Q 048126 293 FRENLRRDVLDNHPDIPELARSVAKEYAGLPL 324 (863)
Q Consensus 293 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 324 (863)
+.+++......- -+++..-|++.+.+..-
T Consensus 455 L~kka~~r~l~l---~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 455 LRKKAVQEQLNA---PPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHhcCCCC---CHHHHHHHHHhccCCHH
Confidence 998876543222 25667777777765543
No 168
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0048 Score=61.00 Aligned_cols=183 Identities=17% Similarity=0.231 Sum_probs=105.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeC-CccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHH
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVS-KDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDIL 223 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (863)
++.+++.++|.-|.|||.+++...... . +. +... |.+. ...+...+...++..+............++....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~--~d-~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N--ED-QVAV-VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C--CC-ceEE-EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 456799999999999999999666555 1 11 1222 3333 344667788888888876321101112233344444
Q ss_pred HHh-ccCc-EEEEEeccCCcc--ccccccCC--CC-CCCCCcEEEEecCch-------hhhhccc-ccce-EeecCCChH
Q 048126 224 RIL-SKKK-FLLLLDDIWERV--DLTKVGVP--FP-DPENKSKIVFTTRFL-------EICGAMK-AHEF-LKVECLGPE 287 (863)
Q Consensus 224 ~~l-~~kr-~LlVlDdv~~~~--~~~~~~~~--l~-~~~~gs~IivTtR~~-------~v~~~~~-~~~~-~~l~~L~~~ 287 (863)
+.. +++| ..+++||..+.. ..+.++-. +. +...--+|+..-..+ .+..... -... |.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 444 3577 899999987642 22222111 11 111112233322211 0111111 1223 899999999
Q ss_pred HHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHH
Q 048126 288 DAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRA 332 (863)
Q Consensus 288 e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 332 (863)
+...++...........+---.+....|.....|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999988776642222233567788999999999999887744
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.45 E-value=0.00081 Score=81.62 Aligned_cols=156 Identities=16% Similarity=0.239 Sum_probs=88.2
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCC----CCEEEEEEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPND----FDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
.++|||+.++.+++..|......-+.++|.+|+|||++|..++.+.. .... ....+|.. ++..+. .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~~p~~l~~~~~~~l-----~~~~l~----a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV-NGDVPESLKNKRLLAL-----DMGALI----A 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh-ccCCchhhcCCeEEEe-----eHHHHh----h
Confidence 45899999999999999776666677999999999999999998862 1110 12223221 111111 0
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhc--cCcEEEEEeccCCcc---------ccccccCCCCCCCCCcEEEEecCchhhh
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILS--KKKFLLLLDDIWERV---------DLTKVGVPFPDPENKSKIVFTTRFLEIC 270 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---------~~~~~~~~l~~~~~gs~IivTtR~~~v~ 270 (863)
+.. .....+.....+.+.+. +++.+|++|+++... +...+..+.... ..-++|-+|...+.-
T Consensus 243 --~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 --GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDEYR 315 (852)
T ss_pred --cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHHHH
Confidence 000 01122223333333332 468999999997532 111222222211 224555555544331
Q ss_pred h-------cccccceEeecCCChHHHHHHHHHHhc
Q 048126 271 G-------AMKAHEFLKVECLGPEDAWRLFRENLR 298 (863)
Q Consensus 271 ~-------~~~~~~~~~l~~L~~~e~~~lf~~~~~ 298 (863)
. ...-...+.++..+.++...++.....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 1 111224678888999999998876543
No 170
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00081 Score=79.34 Aligned_cols=156 Identities=18% Similarity=0.299 Sum_probs=89.2
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCC---CCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPND---FDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
++++||+.++.++++.|......-+.++|.+|+|||++|+.++......... .++.+|.. +...+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 4579999999999999977555566789999999999999999875211111 23444421 11111 10
Q ss_pred hCCCCccccCCChhHHHHHHHHHh-ccCcEEEEEeccCCc----------cccccccCCCCCCCCCcEEEEecCchhhhh
Q 048126 203 IGFLDESWKNGSLEDKASDILRIL-SKKKFLLLLDDIWER----------VDLTKVGVPFPDPENKSKIVFTTRFLEICG 271 (863)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~~~~~l~~~~~gs~IivTtR~~~v~~ 271 (863)
+.. .....+.....+.+.+ +..+.+|++|+++.. .+...+..++.. ...-++|-+|...+...
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHH
Confidence 000 0112233333333333 346789999999742 111112222221 12345555555443211
Q ss_pred -------cccccceEeecCCChHHHHHHHHHHh
Q 048126 272 -------AMKAHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 272 -------~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
...-...+.++..+.+++.+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11122478999999999999998654
No 171
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00049 Score=63.89 Aligned_cols=89 Identities=27% Similarity=0.156 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhc
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILS 227 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (863)
..+.|+|++|+||||+|+.++.... .....++++..+........... ........ ...........+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999872 22234566655443322222111 00111000 11222233334444444
Q ss_pred cC-cEEEEEeccCCccc
Q 048126 228 KK-KFLLLLDDIWERVD 243 (863)
Q Consensus 228 ~k-r~LlVlDdv~~~~~ 243 (863)
.. ..+|++|+++....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 44 48999999987543
No 172
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.43 E-value=0.0011 Score=74.08 Aligned_cols=161 Identities=13% Similarity=0.160 Sum_probs=88.4
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCC---CCCCEEEEEEeCCc
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAP---NDFDVVIWVVVSKD 189 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~ 189 (863)
..+.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.. ... ..+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch
Confidence 3456899999998887631 134568899999999999999999987 211 01223445554432
Q ss_pred cCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH-hccCcEEEEEeccCCcc---------cc-----ccccCCCCC-
Q 048126 190 LQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI-LSKKKFLLLLDDIWERV---------DL-----TKVGVPFPD- 253 (863)
Q Consensus 190 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~---------~~-----~~~~~~l~~- 253 (863)
.+.. ..... .......+....++. -.+++.+|+||+++... +. ..+...+..
T Consensus 261 ----eLl~----kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 ----ELLN----KYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ----hhcc----cccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 1110 00000 000011111122221 12478999999997421 11 122222221
Q ss_pred -CCCCcEEEEecCchhhhh-c-c---cccceEeecCCChHHHHHHHHHHhcc
Q 048126 254 -PENKSKIVFTTRFLEICG-A-M---KAHEFLKVECLGPEDAWRLFRENLRR 299 (863)
Q Consensus 254 -~~~gs~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 299 (863)
...+..||.||....... . . .-+..+.++..+.++..++|+.++..
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 113445566665543311 1 1 22456899999999999999988643
No 173
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.42 E-value=0.01 Score=71.51 Aligned_cols=46 Identities=33% Similarity=0.426 Sum_probs=38.1
Q ss_pred CCccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.|.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999887642 234589999999999999999999987
No 174
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.005 Score=65.29 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=108.6
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCC------------CCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGA------------PNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~F~~~~wv~~s~~~~~ 192 (863)
.+++|-+..++.+.+.+..+++ +..-++|+.|+||+++|..+++..... ...+.-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4578999999999999988765 789999999999999999988775211 011122334321100000
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhc-----cCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILS-----KKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTR 265 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR 265 (863)
..+-...++..+...........++ ++.+.+.+. +.+-++|+|+++... ....+...+....+..-|++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 0000111111111000001111222 233444443 456789999987542 23333333322223333444544
Q ss_pred chhhhhcc-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 266 FLEICGAM-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 266 ~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
...+.... .-...+.+.+++.++..+.+.+...... .......++..++|.|..+..+.
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHHH
Confidence 44443322 2235789999999999999987643211 11123678999999997665533
No 175
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.41 E-value=0.0038 Score=71.28 Aligned_cols=170 Identities=12% Similarity=0.117 Sum_probs=92.1
Q ss_pred CCccchhHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLG---E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
.+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 346788877766655442 1 123458899999999999999999876 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc------------c----ccccCCCC--CCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD------------L----TKVGVPFP--DPE 255 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------------~----~~~~~~l~--~~~ 255 (863)
.+.... .......+...+.......+.+|++||++.... + ..+...+. ...
T Consensus 123 ~~~~~~-----------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEMF-----------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHH-----------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111110 011112223333334445678999999964210 0 11111111 122
Q ss_pred CCcEEEEecCchhh-----hhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc
Q 048126 256 NKSKIVFTTRFLEI-----CGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 256 ~gs~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 322 (863)
.+..||.||..... .+...-+..+.++..+.++-.++|+..+........ .....+++.+.|.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~ 259 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGF 259 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCC
Confidence 34556666655432 111123456888888888888888877654321111 1245777777774
No 176
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.36 E-value=4e-05 Score=88.01 Aligned_cols=115 Identities=23% Similarity=0.173 Sum_probs=61.5
Q ss_pred ccCCCCeEEccCC-Cccc--cchhhhcCCCCCEEecCCc-cccCCCc---HHHhhcCCCCcEEEeeccccccCchhhHHH
Q 048126 562 TLVSLEHLDLSGT-AITH--LPIELQKLVNLKCLNLEYM-YNLNQFP---RLVMSAFSKLQVLRILKSNVLFGGHQFLVE 634 (863)
Q Consensus 562 ~l~~L~~L~L~~~-~l~~--lp~~~~~l~~L~~L~l~~~-~~l~~lp---~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~ 634 (863)
.+++|+.|.+.++ .+.. +-.....+++|+.|++++| ......+ ......+.+|+.|++..+....+ ..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd---~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD---IGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc---hhHH
Confidence 3677888888877 5554 4456777888888888772 2222222 12245567778888777764332 2233
Q ss_pred HHcC-CccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCC
Q 048126 635 ELMG-MKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDS 679 (863)
Q Consensus 635 ~l~~-L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 679 (863)
.+.. +++|+.|.+..+..-.-..+.......++|+.|++++|...
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3322 55666666443332111222222233345666666555544
No 177
>PRK08116 hypothetical protein; Validated
Probab=97.35 E-value=0.00031 Score=72.71 Aligned_cols=101 Identities=25% Similarity=0.287 Sum_probs=58.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhc
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILS 227 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (863)
..+.++|..|+|||+||..+++... ..-..++|++ ..+++..+........ ..+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 4588999999999999999999972 2233466665 3445555554443211 111 222334444
Q ss_pred cCcEEEEEeccCC--cccccc--ccCCCCC-CCCCcEEEEecCc
Q 048126 228 KKKFLLLLDDIWE--RVDLTK--VGVPFPD-PENKSKIVFTTRF 266 (863)
Q Consensus 228 ~kr~LlVlDdv~~--~~~~~~--~~~~l~~-~~~gs~IivTtR~ 266 (863)
+-. ||||||+.. ..+|.. +...+.. -..|..+|+||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999953 233432 2111111 1245668888864
No 178
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00029 Score=66.46 Aligned_cols=101 Identities=28% Similarity=0.471 Sum_probs=69.0
Q ss_pred ceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCC--ccccccCCCCeEEcc
Q 048126 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP--SGISTLVSLEHLDLS 572 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~L~ 572 (863)
....+++.+|++..+..++.++.|.+|.+.+|.|+.+.+..-.-+++|..|.|.+|+ +..+- .-+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeec
Confidence 455677777877777777788888888888888887777755566778888888873 32221 234566777888777
Q ss_pred CCCccccch----hhhcCCCCCEEecCC
Q 048126 573 GTAITHLPI----ELQKLVNLKCLNLEY 596 (863)
Q Consensus 573 ~~~l~~lp~----~~~~l~~L~~L~l~~ 596 (863)
+|.++..+. .++++++|++||...
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 777664432 356667777776654
No 179
>PRK10536 hypothetical protein; Provisional
Probab=97.33 E-value=0.0016 Score=65.42 Aligned_cols=136 Identities=10% Similarity=0.109 Sum_probs=75.0
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEE--e--CCc-----cCHH---
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVV--V--SKD-----LQLE--- 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~--~--s~~-----~~~~--- 193 (863)
..+.+|......++.++.+. .++.+.|..|+|||+||..++.+. -....|+.++.+. + ++. -+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 44568888888888888653 599999999999999999998864 1123455433321 1 110 0111
Q ss_pred -HHHHHHHHHhCCCCccccCCChhHHHH--------HHHHHhccCcE---EEEEeccCCccccccccCCCCCCCCCcEEE
Q 048126 194 -KIQEKIGRRIGFLDESWKNGSLEDKAS--------DILRILSKKKF---LLLLDDIWERVDLTKVGVPFPDPENKSKIV 261 (863)
Q Consensus 194 -~~~~~i~~~l~~~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~~~l~~~~~gs~Ii 261 (863)
-.++-+.+.+.... .....+.... .=..+++++.+ +||+|++.+... ..+...+...+.+|+||
T Consensus 132 ~p~~~pi~D~L~~~~---~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v 207 (262)
T PRK10536 132 APYFRPVYDVLVRRL---GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHh---ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEE
Confidence 11222222221100 0000010100 00236667654 999999987543 22222233456789999
Q ss_pred EecCchh
Q 048126 262 FTTRFLE 268 (863)
Q Consensus 262 vTtR~~~ 268 (863)
+|--..+
T Consensus 208 ~~GD~~Q 214 (262)
T PRK10536 208 VNGDITQ 214 (262)
T ss_pred EeCChhh
Confidence 9876543
No 180
>PRK08118 topology modulation protein; Reviewed
Probab=97.33 E-value=0.00015 Score=69.48 Aligned_cols=36 Identities=36% Similarity=0.580 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEE
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIW 183 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w 183 (863)
..|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468899999999999999999987222256777775
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0009 Score=71.96 Aligned_cols=134 Identities=20% Similarity=0.204 Sum_probs=82.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC--EEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD--VVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDIL 223 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (863)
....+.|||..|.|||.|++++.+.. ..... .+++++ .+.....++..+.. .....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHH
Confidence 47799999999999999999999998 23333 344442 23333333333321 1233444
Q ss_pred HHhccCcEEEEEeccCCccc---cc-cccCCCCC-CCCCcEEEEecCch---------hhhhcccccceEeecCCChHHH
Q 048126 224 RILSKKKFLLLLDDIWERVD---LT-KVGVPFPD-PENKSKIVFTTRFL---------EICGAMKAHEFLKVECLGPEDA 289 (863)
Q Consensus 224 ~~l~~kr~LlVlDdv~~~~~---~~-~~~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~ 289 (863)
+.. .-=++++||++-... |+ ++...+.. ...|-.||+|++.. .+...+...-.+.+.+.+.+.-
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 444 333888999975322 21 22111111 12344899999653 3344555567899999999999
Q ss_pred HHHHHHHhcccc
Q 048126 290 WRLFRENLRRDV 301 (863)
Q Consensus 290 ~~lf~~~~~~~~ 301 (863)
...+.+.+....
T Consensus 250 ~aiL~kka~~~~ 261 (408)
T COG0593 250 LAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHHhcC
Confidence 999999776554
No 182
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.29 E-value=0.017 Score=62.03 Aligned_cols=198 Identities=14% Similarity=0.189 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHH-HHHHhhhcCCCCCCCEEEEEEeCCcc---CHHHHHHHHHHHhCCC
Q 048126 131 LESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLL-TKINNKLLGAPNDFDVVIWVVVSKDL---QLEKIQEKIGRRIGFL 206 (863)
Q Consensus 131 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~s~~~---~~~~~~~~i~~~l~~~ 206 (863)
|.+.+++|..||.+..-..|.|.|+-|.||+.|+ .++..+. + .++.|.|.+-. +-..+...++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-K------NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-C------CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5678899999999877789999999999999999 7777664 1 27777765432 3445666666666532
Q ss_pred C-----------------------ccccCCChhHHHHHH-------HH-------------------Hhc---cCcEEEE
Q 048126 207 D-----------------------ESWKNGSLEDKASDI-------LR-------------------ILS---KKKFLLL 234 (863)
Q Consensus 207 ~-----------------------~~~~~~~~~~~~~~l-------~~-------------------~l~---~kr~LlV 234 (863)
. ..+......++...+ ++ +|. .+|=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 001111122222111 11 011 1256899
Q ss_pred EeccCCc-----------cccccccCCCCCCCCCcEEEEecCchhh----hhccc--ccceEeecCCChHHHHHHHHHHh
Q 048126 235 LDDIWER-----------VDLTKVGVPFPDPENKSKIVFTTRFLEI----CGAMK--AHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 235 lDdv~~~-----------~~~~~~~~~l~~~~~gs~IivTtR~~~v----~~~~~--~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
+|+.-.. .+|..... ..+-.+||++|-+... ...+. ..+.+.|...+.+.|..+.....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 9997542 23433211 1244678988877544 23332 34568899999999999999887
Q ss_pred cccccC------------CC-----CChHHHHHHHHHHhCCchhHHHHHHHHhcCCCCh
Q 048126 298 RRDVLD------------NH-----PDIPELARSVAKEYAGLPLALITIGRAMTCKKTT 339 (863)
Q Consensus 298 ~~~~~~------------~~-----~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~ 339 (863)
...... .+ .....-....++..||--.-+..+++.++...++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 653210 00 1233445677888999999999999999876554
No 183
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.29 E-value=0.0013 Score=75.59 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=39.0
Q ss_pred CCccchhHHHHHHHHHhcCC-----CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEE-----QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++++|-+..++++..++... ..+++.|+|+.|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999998652 33579999999999999999999876
No 184
>CHL00176 ftsH cell division protein; Validated
Probab=97.27 E-value=0.0056 Score=71.06 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=94.5
Q ss_pred CCccchhHHHHHHHHHh---cCC---------CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCL---GEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
.+++|.++.++++.+.+ ... ..+-|.++|++|+|||++|+.++... ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 45678887766655543 321 24568899999999999999999876 222 2332211
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc------------c----cccccCCCC--CCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV------------D----LTKVGVPFP--DPE 255 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~~~l~--~~~ 255 (863)
++.... .+ .........+.+.....+.+|++||++... . +..+...+. ...
T Consensus 251 ~f~~~~---~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEMF---VG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHh---hh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111100 00 111222333444455678999999996421 0 111211111 123
Q ss_pred CCcEEEEecCchhhhh-c-c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCC
Q 048126 256 NKSKIVFTTRFLEICG-A-M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAG 321 (863)
Q Consensus 256 ~gs~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 321 (863)
.+..||.||...+... . . .-+..+.++..+.++-.++++.++..... ........+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 4556777776644321 1 1 12356788888999988999887754221 112335667777776
No 185
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.013 Score=62.04 Aligned_cols=177 Identities=10% Similarity=0.065 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc-
Q 048126 132 ESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES- 209 (863)
Q Consensus 132 ~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~- 209 (863)
+...+.+...+..+++ +.+.++|+.|+||+++|..++...-- .....+- .. ...+ .+.+-..++-.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~-------~c---~~c~-~~~~g~HPD~~~ 77 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAA-------AQ---RTRQ-LIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCC-------cc---hHHH-HHhcCCCCCEEE
Confidence 3456677777766654 46889999999999999999876521 1100000 00 0000 00100000000
Q ss_pred ----cc--------CCChhHHHHHHHHHh-----ccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCc-hhh
Q 048126 210 ----WK--------NGSLEDKASDILRIL-----SKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRF-LEI 269 (863)
Q Consensus 210 ----~~--------~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v 269 (863)
.+ ...++ .+..+.+.+ .+++-++|+|+++... .-..+...+.....++.+|++|.+ ..+
T Consensus 78 i~~~p~~~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARL 156 (319)
T ss_pred EecCCCcccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhC
Confidence 00 00111 222233322 2456689999997642 222333333333456767766665 333
Q ss_pred hhcc-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 270 CGAM-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 270 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
.... .-...+.+.+++.+++.+.+... +. + ...+..++..++|.|+.+..+.
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 3222 22346789999999998888653 11 1 2236678999999998776544
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0088 Score=64.21 Aligned_cols=159 Identities=9% Similarity=0.045 Sum_probs=84.1
Q ss_pred ccc-hhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 048126 128 TVG-LESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 128 ~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 205 (863)
++| -+..++.+.+.+..+++ +...++|+.|+||||+|+.+++.... ....... .++.....+.+...-..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~-------~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE-------PCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC-------CCCcCHHHHHHhcCCCC
Confidence 566 66677888888876654 56689999999999999999877521 1100000 00000111111100000
Q ss_pred C----CccccCCChhHHHHHHHHH-----hccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCchh-hhhc-
Q 048126 206 L----DESWKNGSLEDKASDILRI-----LSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFLE-ICGA- 272 (863)
Q Consensus 206 ~----~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~~~- 272 (863)
. ...-.....++.. .+.+. ..+.+=++|+|+++... ....+...+.....++.+|++|.+.. +...
T Consensus 79 D~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CEEEeccccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 0 0000001112222 12222 22445578899987542 23344444444455677777776533 3222
Q ss_pred ccccceEeecCCChHHHHHHHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRE 295 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~ 295 (863)
..-...+++.+++.++..+.+.+
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH
Confidence 22235789999999999888865
No 187
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.031 Score=59.05 Aligned_cols=177 Identities=12% Similarity=0.046 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC----
Q 048126 133 SMFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLD---- 207 (863)
Q Consensus 133 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---- 207 (863)
...+.+.+.+..++ .+.+-++|+.|+||+++|..++...--..... ..++.-...+.+...-....
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~---------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS---------EACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 34566677766555 45788999999999999999987652110000 01111111111111000000
Q ss_pred cc--ccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCch-hhhhcc-ccc
Q 048126 208 ES--WKNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFL-EICGAM-KAH 276 (863)
Q Consensus 208 ~~--~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~ 276 (863)
+. -....+++. +.+.+.+ .+.+=++|+|+++.. .....+...+.....++.+|++|.+. .+.... .-.
T Consensus 81 p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 81 PEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred cCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 00 001122222 2333333 234558889999764 33444444444444566676666654 443322 223
Q ss_pred ceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 277 EFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 277 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
..+.+.+++.+++.+.+.... . + .+..+++.++|.|+.+..+.
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~-~-----~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQG-I-----T-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcC-C-----c-----hHHHHHHHcCCCHHHHHHHh
Confidence 478899999999999886531 0 1 14567899999999776553
No 188
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.12 E-value=0.00091 Score=61.35 Aligned_cols=22 Identities=45% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048126 150 IGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (863)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 189
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.015 Score=60.16 Aligned_cols=193 Identities=16% Similarity=0.229 Sum_probs=107.3
Q ss_pred cchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 129 VGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 129 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
=|-++.+++|.+.+.- +.++-|.+||++|.|||-||++|+++- ...| +.|... +
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS----E- 220 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS----E- 220 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----H-
Confidence 4789999999888741 356778899999999999999999986 3344 333221 1
Q ss_pred HHHHHHHhCCCCccccCCChhHHHHHHHHHhcc-CcEEEEEeccCCcc----------c------cccccCCCC--CCCC
Q 048126 196 QEKIGRRIGFLDESWKNGSLEDKASDILRILSK-KKFLLLLDDIWERV----------D------LTKVGVPFP--DPEN 256 (863)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~----------~------~~~~~~~l~--~~~~ 256 (863)
+++..-.. -..+...+.+.-+. .+.+|.+|.++... + .-++...+. +...
T Consensus 221 ---lVqKYiGE--------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 221 ---LVQKYIGE--------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ---HHHHHhcc--------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 22211111 12344444444443 68899999986420 0 111222222 1234
Q ss_pred CcEEEEecCchhhh-----hcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch----hHHH
Q 048126 257 KSKIVFTTRFLEIC-----GAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP----LALI 327 (863)
Q Consensus 257 gs~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----lai~ 327 (863)
..|||..|-..++. +--.-+..++++.=+.+.=.++|+-++..-....+-++ +.+++.|.|.- -|+.
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHH
Confidence 58899888766552 21223456777744444455667666554333333344 55666666654 3344
Q ss_pred HHHHHhc--CCC---ChhHHHHHHHHH
Q 048126 328 TIGRAMT--CKK---TTQEWHHAIQIL 349 (863)
Q Consensus 328 ~~~~~l~--~~~---~~~~w~~~l~~l 349 (863)
+=|++++ ..+ +.+++..+.++.
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 4444443 222 445555554443
No 190
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0057 Score=68.96 Aligned_cols=158 Identities=23% Similarity=0.304 Sum_probs=89.9
Q ss_pred CCccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKI 199 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 199 (863)
.+.+|.++.+++|+++|.- -+-+++++||++|||||+|++.+++-. ...| +-++++.--|..++-..=
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcccc
Confidence 4568999999999999852 245799999999999999999999987 3444 223344333333321100
Q ss_pred HHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc---------cccccccCC-----CCC-----CCCCcEE
Q 048126 200 GRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER---------VDLTKVGVP-----FPD-----PENKSKI 260 (863)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~~~-----l~~-----~~~gs~I 260 (863)
-..+| .=....++.+. ..+.++=+++||.++.. ..+.++..| |.+ .--=|.|
T Consensus 397 RTYIG--------amPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 397 RTYIG--------AMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ccccc--------cCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 00011 00111122222 22346778999998743 111222211 110 0112555
Q ss_pred E-EecCc-hh-h-hhcccccceEeecCCChHHHHHHHHHHhc
Q 048126 261 V-FTTRF-LE-I-CGAMKAHEFLKVECLGPEDAWRLFRENLR 298 (863)
Q Consensus 261 i-vTtR~-~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 298 (863)
+ |||-| -+ + +..+...+++++.+.+++|-.++-+++.-
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 5 44443 22 1 23344457899999999998888877653
No 191
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.10 E-value=0.00062 Score=67.04 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=22.8
Q ss_pred chhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEecc
Q 048126 686 CLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFC 734 (863)
Q Consensus 686 ~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 734 (863)
.+..+.+|+.|+|.+|..... .....+ ......+.|+.|.+.+|
T Consensus 209 gl~y~~~LevLDlqDNtft~~-gS~~La----~al~~W~~lrEL~lnDC 252 (388)
T COG5238 209 GLFYSHSLEVLDLQDNTFTLE-GSRYLA----DALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHhCcceeeeccccchhhh-hHHHHH----HHhcccchhhhccccch
Confidence 455567888888877643221 000000 00012356788888887
No 192
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.022 Score=60.32 Aligned_cols=178 Identities=6% Similarity=0.029 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC----
Q 048126 133 SMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLD---- 207 (863)
Q Consensus 133 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---- 207 (863)
..-+.+.+.+..+++ +.+.+.|+.|+||+++|+.++....-. .... ...++.....+.+...-....
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~-~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ-TPQG-------DQPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC-CCCC-------CCCCCCCHHHHHHhcCCCCCEEEEc
Confidence 345667777766554 677899999999999999998776210 1000 011111111222211100000
Q ss_pred c-cccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCch-hhhhcc-cccc
Q 048126 208 E-SWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFL-EICGAM-KAHE 277 (863)
Q Consensus 208 ~-~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~ 277 (863)
+ .-....+++ ++.+.+.+ .+++=++|+|+++.. .....+...+.....++.+|++|.+. .+.... .-..
T Consensus 81 p~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0 000112222 22333333 245568889999764 23344444444444566777777664 343222 2235
Q ss_pred eEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHH
Q 048126 278 FLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALI 327 (863)
Q Consensus 278 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 327 (863)
.+.+.+++.++..+.+....... ...+...++.++|.|..+.
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLAL 201 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHHH
Confidence 78999999999998888754211 1235667889999996443
No 193
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0081 Score=64.91 Aligned_cols=147 Identities=22% Similarity=0.244 Sum_probs=88.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
....+.+.|++|+|||+||.+++..- .|..+--++ ++++ +|.. +..........+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiS------pe~m-------iG~s----EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIIS------PEDM-------IGLS----ESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeC------hHHc-------cCcc----HHHHHHHHHHHHHHh
Confidence 45567789999999999999998764 676543332 1111 1111 011111222233334
Q ss_pred hccCcEEEEEeccCCccccccccCCCC-------------CCCCCcE--EEEecCchhhhhcccc----cceEeecCCCh
Q 048126 226 LSKKKFLLLLDDIWERVDLTKVGVPFP-------------DPENKSK--IVFTTRFLEICGAMKA----HEFLKVECLGP 286 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~~~~~~~~~~l~-------------~~~~gs~--IivTtR~~~v~~~~~~----~~~~~l~~L~~ 286 (863)
-+..=-.||+||+....+|-.++..+. ....|-| |+-||....|...|+- ...|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 445667999999988888877655432 1123444 4457777778777763 34688999987
Q ss_pred -HHHHHHHHHHh-cccccCCCCChHHHHHHHHHHh
Q 048126 287 -EDAWRLFRENL-RRDVLDNHPDIPELARSVAKEY 319 (863)
Q Consensus 287 -~e~~~lf~~~~-~~~~~~~~~~~~~~~~~i~~~c 319 (863)
++..+.++..- |. +.+...++.+...+|
T Consensus 675 ~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccCCC-----cchhHHHHHHHhccc
Confidence 77777776542 22 234555666666666
No 194
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.09 E-value=0.0031 Score=67.04 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=65.5
Q ss_pred HHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCE-EEEEEeCCcc-CHHHHHHHHHHHhCCCCccc
Q 048126 134 MFDKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDV-VIWVVVSKDL-QLEKIQEKIGRRIGFLDESW 210 (863)
Q Consensus 134 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~ 210 (863)
...++++.+.. ++-..+.|+|..|+|||||++.+++... .++-+. ++|+.+.+.. ++.++.+.+...+.......
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34457777754 3334678999999999999999998772 223344 4677776654 67888888887765432100
Q ss_pred cCC---ChhHHHHHHHHHh--ccCcEEEEEeccCC
Q 048126 211 KNG---SLEDKASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 211 ~~~---~~~~~~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
... ........+.+++ ++++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 000 1111112222222 47999999999964
No 195
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.08 E-value=0.0007 Score=64.01 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=38.8
Q ss_pred ccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccch--hhhcCCCCCEEec
Q 048126 517 HLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPI--ELQKLVNLKCLNL 594 (863)
Q Consensus 517 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l 594 (863)
+...++|++|.+..++. |..++.|..|.|.+|.+...-|.--..+++|..|.|.+|+|.++-+ .+..+++|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44556666665544433 4556666666666664333333333334455666666655554421 1334444444444
Q ss_pred CCc
Q 048126 595 EYM 597 (863)
Q Consensus 595 ~~~ 597 (863)
-+|
T Consensus 121 l~N 123 (233)
T KOG1644|consen 121 LGN 123 (233)
T ss_pred cCC
Confidence 443
No 196
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.07 E-value=0.0001 Score=64.93 Aligned_cols=106 Identities=27% Similarity=0.367 Sum_probs=80.8
Q ss_pred CCccceEEccCCccccccch--hhhcCCCccEEEccCCCccccCCccccc-cCCCCeEEccCCCccccchhhhcCCCCCE
Q 048126 515 CPHLLSLFLSDNSLKMIAGD--FFQFMPSLRVFNMSNNHLLWKLPSGIST-LVSLEHLDLSGTAITHLPIELQKLVNLKC 591 (863)
Q Consensus 515 ~~~L~~L~l~~~~l~~~~~~--~~~~l~~L~~L~L~~~~~~~~lp~~i~~-l~~L~~L~L~~~~l~~lp~~~~~l~~L~~ 591 (863)
...+-.++|+.|.+..+++. .+....+|...+|++| ....+|..+.. .+.+++|++++|.|+.+|..+..++.|+.
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 34466778888877655533 2456677888899999 66678877764 45899999999999999999999999999
Q ss_pred EecCCccccCCCcHHHhhcCCCCcEEEeeccc
Q 048126 592 LNLEYMYNLNQFPRLVMSAFSKLQVLRILKSN 623 (863)
Q Consensus 592 L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~ 623 (863)
|+++.| .+...|.- +-.|.+|-.|+.-++.
T Consensus 105 lNl~~N-~l~~~p~v-i~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 105 LNLRFN-PLNAEPRV-IAPLIKLDMLDSPENA 134 (177)
T ss_pred cccccC-ccccchHH-HHHHHhHHHhcCCCCc
Confidence 999998 56777875 5557777777765543
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.07 E-value=0.0061 Score=57.99 Aligned_cols=137 Identities=14% Similarity=0.186 Sum_probs=72.0
Q ss_pred chhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCC-----------------CCCEEEEEEeCCc--
Q 048126 130 GLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPN-----------------DFDVVIWVVVSKD-- 189 (863)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~F~~~~wv~~s~~-- 189 (863)
|-+...+.+.+.+..++. +.+.++|+.|+||+++|..+++..-.... ...-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 456677888888877664 47899999999999999999887621111 1112223322211
Q ss_pred -cCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCc
Q 048126 190 -LQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRF 266 (863)
Q Consensus 190 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~ 266 (863)
..++++. .+...+.... ..+++=++|+||++.. .....+...+.....++++|++|++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 1222222 3333322211 1235668999999864 3344444444444567888888887
Q ss_pred hhh-hhc-ccccceEeecCCC
Q 048126 267 LEI-CGA-MKAHEFLKVECLG 285 (863)
Q Consensus 267 ~~v-~~~-~~~~~~~~l~~L~ 285 (863)
..- ... ..-...+.+.++|
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 542 221 1122355666553
No 198
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.05 E-value=0.0015 Score=65.33 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEe
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVV 186 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 186 (863)
-.++|+|..|.||||++..+.... ...|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367799999999999999999887 678887777654
No 199
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.014 Score=64.31 Aligned_cols=91 Identities=20% Similarity=0.225 Sum_probs=61.3
Q ss_pred CccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHH
Q 048126 127 PTVGLESMFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEK 194 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 194 (863)
++=|.+..+.++.+++.. ...+-|.++|++|+|||.||+++++.. . -. |+.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~--vP-----f~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G--VP-----FLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C--Cc-----eEeecch-----
Confidence 345889888888887642 235678899999999999999999987 2 22 3444432
Q ss_pred HHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCC
Q 048126 195 IQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 195 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
.|+..+ ...+++.+.+.+.+.-..-++++++|+++.
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222222 233444444455556667899999999974
No 200
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.01 E-value=0.0088 Score=63.61 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEe
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVV 186 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 186 (863)
...+.++|..|+|||+||..+++... ...+ .++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g~-~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRGK-SVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCCC-eEEEEEH
Confidence 37799999999999999999999872 2233 5677764
No 201
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.00 E-value=0.0025 Score=62.56 Aligned_cols=90 Identities=22% Similarity=0.214 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCccc-cCCChhHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLDESW-KNGSLEDKASDILR 224 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 224 (863)
+++|.++|+.|+||||.+.+++... ..+ -..+..|+... .....+.++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4689999999999999999998887 222 33566777543 2345677888999998764221 12233344433333
Q ss_pred HhccCc-EEEEEeccC
Q 048126 225 ILSKKK-FLLLLDDIW 239 (863)
Q Consensus 225 ~l~~kr-~LlVlDdv~ 239 (863)
..+.++ =++++|=.-
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 334433 477778653
No 202
>PRK07261 topology modulation protein; Provisional
Probab=96.96 E-value=0.0029 Score=60.91 Aligned_cols=66 Identities=24% Similarity=0.436 Sum_probs=41.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCC-CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhc
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGA-PNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILS 227 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (863)
.|.|+|++|+||||||+.+.... .. .-+.|...|-.. +...+.++....+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 57 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLL 57 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHh
Confidence 58899999999999999998775 21 123444444211 122233455556666666
Q ss_pred cCcEEEEEeccCC
Q 048126 228 KKKFLLLLDDIWE 240 (863)
Q Consensus 228 ~kr~LlVlDdv~~ 240 (863)
+.+ .|+|+...
T Consensus 58 ~~~--wIidg~~~ 68 (171)
T PRK07261 58 KHD--WIIDGNYS 68 (171)
T ss_pred CCC--EEEcCcch
Confidence 666 57787643
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.013 Score=67.95 Aligned_cols=104 Identities=21% Similarity=0.360 Sum_probs=63.9
Q ss_pred CCccchhHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------E--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQ 196 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 196 (863)
..+||-+..++.+.+.+.. + ...+...+|+.|||||.||++++... -+.=+..+-+..|.-....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkH--- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKH--- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHH---
Confidence 3578999999999988852 1 34577789999999999999999876 2211334444444332222
Q ss_pred HHHHHHhCCCCccccCCChhHHHHHHHHHhccCcE-EEEEeccCC
Q 048126 197 EKIGRRIGFLDESWKNGSLEDKASDILRILSKKKF-LLLLDDIWE 240 (863)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~ 240 (863)
.+.+-+|.+.. ....+ + -..|-+..+.++| +|.||+|..
T Consensus 565 -sVSrLIGaPPG-YVGye--e-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 565 -SVSRLIGAPPG-YVGYE--E-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred -HHHHHhCCCCC-Cceec--c-ccchhHhhhcCCCeEEEechhhh
Confidence 22222333321 11111 1 3446667778888 777799864
No 204
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.92 E-value=0.085 Score=64.13 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=37.3
Q ss_pred CCccchhHHHHHHHHHhcC-------C-C-ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE-------E-Q-VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------~-~-~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.|.+.+.. + + ..++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999988888752 1 1 2478899999999999999999876
No 205
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.91 E-value=0.014 Score=69.58 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKI 199 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 199 (863)
...+|.+..++.|++++.. ....++.++|++|+||||+|+.++... ...|- -+..+...+...+...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccch
Confidence 4578999999999988852 245689999999999999999999876 23332 23333333332221111
Q ss_pred HHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc------cccccCCC---------------CCCCCCc
Q 048126 200 GRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD------LTKVGVPF---------------PDPENKS 258 (863)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~~~~~l---------------~~~~~gs 258 (863)
.... ..........+... ....-+++||.++.... ...+...+ +..-.+.
T Consensus 396 ~~~~--------g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 396 RTYI--------GSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hccC--------CCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 0001 11111222223221 12344788999864311 01111111 1111334
Q ss_pred EEEEecCchhhhh-cccccceEeecCCChHHHHHHHHHHh
Q 048126 259 KIVFTTRFLEICG-AMKAHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 259 ~IivTtR~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
-+|.|+.+..+.. ..+-..++.+.+++.+|-.++.+++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 3444554433211 11223468899999999888887765
No 206
>PRK08181 transposase; Validated
Probab=96.87 E-value=0.0014 Score=67.47 Aligned_cols=78 Identities=26% Similarity=0.239 Sum_probs=46.0
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHH
Q 048126 140 RCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKA 219 (863)
Q Consensus 140 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 219 (863)
+|+. ...-+.++|++|+|||.||..+.+... .....++|++ ..++...+..... ..+.....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHHH
Confidence 4554 334689999999999999999998762 2223456664 3445555533221 11122222
Q ss_pred HHHHHHhccCcEEEEEeccCC
Q 048126 220 SDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 220 ~~l~~~l~~kr~LlVlDdv~~ 240 (863)
+.+. +.=|||+||+..
T Consensus 163 ----~~l~-~~dLLIIDDlg~ 178 (269)
T PRK08181 163 ----AKLD-KFDLLILDDLAY 178 (269)
T ss_pred ----HHHh-cCCEEEEecccc
Confidence 2222 345999999964
No 207
>PRK12377 putative replication protein; Provisional
Probab=96.84 E-value=0.0054 Score=62.35 Aligned_cols=75 Identities=31% Similarity=0.294 Sum_probs=45.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
+...+.++|..|+|||+||..+++... .....++++++. ++...+-..... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999982 233345676543 344444333211 11111 12222
Q ss_pred hccCcEEEEEeccCC
Q 048126 226 LSKKKFLLLLDDIWE 240 (863)
Q Consensus 226 l~~kr~LlVlDdv~~ 240 (863)
+ .+-=|||+||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 2 3556999999953
No 208
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.83 E-value=0.022 Score=58.39 Aligned_cols=168 Identities=20% Similarity=0.241 Sum_probs=101.4
Q ss_pred CCccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-----HHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-----LEKIQ 196 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-----~~~~~ 196 (863)
..++|-.++..++.+++.. ++..-+.|+|+.|.|||+|...+..+..+..++| +-|......- +..+.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 4578999999998888864 4556777999999999999998888753344444 3344443332 23344
Q ss_pred HHHHHHhCCCCccccCCChhHHHHHHHHHhcc------CcEEEEEeccCCccc------ccc-ccCCCCCCCCCcEEEEe
Q 048126 197 EKIGRRIGFLDESWKNGSLEDKASDILRILSK------KKFLLLLDDIWERVD------LTK-VGVPFPDPENKSKIVFT 263 (863)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~~~------~~~-~~~~l~~~~~gs~IivT 263 (863)
+++..++..... ...+..+....+.+.|+. -++++|+|.++-... +-. +-..-....+-+-|-+|
T Consensus 101 rql~~e~~~~~k--~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 101 RQLALELNRIVK--SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHhhhhe--eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 444444433221 234455556666666653 368999998864311 000 10111123455777899
Q ss_pred cCchh-------hhhcccccceEeecCCChHHHHHHHHHHhc
Q 048126 264 TRFLE-------ICGAMKAHEFLKVECLGPEDAWRLFRENLR 298 (863)
Q Consensus 264 tR~~~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 298 (863)
||-.. |-....-..++-++.++-++...++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 99643 233332233556788888888888887663
No 209
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.78 E-value=0.035 Score=61.33 Aligned_cols=90 Identities=20% Similarity=0.158 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCccc-cCCChhHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLDESW-KNGSLEDKASDIL 223 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 223 (863)
...+|.++|.+|+||||+|..++.... +..+ .++.|++... ....+.++.++.+++.+.... ...+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467999999999999999999998872 2233 3444544321 223455667777776543211 1122223333333
Q ss_pred HHhccCcEEEEEeccC
Q 048126 224 RILSKKKFLLLLDDIW 239 (863)
Q Consensus 224 ~~l~~kr~LlVlDdv~ 239 (863)
+...+. =++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333343 467778763
No 210
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.75 E-value=0.0053 Score=62.31 Aligned_cols=46 Identities=24% Similarity=0.360 Sum_probs=35.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 456999999999999999999988762 234678899877 5555444
No 211
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.74 E-value=0.0094 Score=71.39 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=58.8
Q ss_pred CCccchhHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------E--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQ 196 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 196 (863)
..++|-+..++.|.+.+.. + ...++.++|+.|+|||+||+.++... . ...+.++.+.-.+...+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~~~- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKHTV- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhcccH-
Confidence 4468888888888887752 1 13467899999999999999999876 2 22355555543221111
Q ss_pred HHHHHHhCCCCccccCCChhHHHHHHHHHhccCc-EEEEEeccCC
Q 048126 197 EKIGRRIGFLDESWKNGSLEDKASDILRILSKKK-FLLLLDDIWE 240 (863)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~ 240 (863)
...++.+.. ....+ ....+.+.++.++ -+++||+++.
T Consensus 527 ---~~lig~~~g-yvg~~---~~~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 527 ---SRLIGAPPG-YVGFE---QGGLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred ---HHHhcCCCC-Ccccc---hhhHHHHHHHhCCCeEEEEechhh
Confidence 111222111 01111 1223344444444 4999999975
No 212
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.73 E-value=0.029 Score=58.20 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHH
Q 048126 133 SMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQ 196 (863)
Q Consensus 133 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 196 (863)
.-++++..++..+ .-|.+.|.+|+|||++|+.++... .. ..+.++++...+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 3345555555433 355689999999999999999754 22 23556666655555443
No 213
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.72 E-value=0.006 Score=58.92 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=41.4
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++||-++.++.+.-...+++.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4579999999999888888889999999999999999999888876
No 214
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.046 Score=60.91 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=48.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
...+|+|+|.+|+||||++..++... ..+.....+..++... .......++.....++.... ...+..++...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~- 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE- 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-
Confidence 34799999999999999999998776 2122223455555422 11222333333444443321 1122233333333
Q ss_pred HhccCcEEEEEeccC
Q 048126 225 ILSKKKFLLLLDDIW 239 (863)
Q Consensus 225 ~l~~kr~LlVlDdv~ 239 (863)
.+.+ .=+||+|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4577888874
No 215
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.068 Score=59.97 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=85.8
Q ss_pred cchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 129 VGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 129 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
=|.++.+.++.+.+.- ...+-|-.+|++|+|||++|+.+++.. +..| +.++.+ ++
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp----EL 504 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP----EL 504 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----HH
Confidence 3577777777665531 356788899999999999999999987 4454 222221 11
Q ss_pred HHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc-------------cccccCCCCCCCCCcEE-E
Q 048126 196 QEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD-------------LTKVGVPFPDPENKSKI-V 261 (863)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~~~l~~~~~gs~I-i 261 (863)
+... ...++..+...+.+.=+--+.+|.||.++.... +..+...+........| |
T Consensus 505 ~sk~-----------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 505 FSKY-----------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred HHHh-----------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 1100 122223333333333334568888888764210 11121222221222223 3
Q ss_pred E--ecCchhhh-hccc---ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHH
Q 048126 262 F--TTRFLEIC-GAMK---AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELA 312 (863)
Q Consensus 262 v--TtR~~~v~-~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 312 (863)
+ |-|...+- ..+. -+..+.++.=+.+--.++|+.++..-.....-++.+++
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 2 33433331 1222 34567777777777788999888765433333444443
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.048 Score=58.38 Aligned_cols=179 Identities=9% Similarity=0.055 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC----
Q 048126 133 SMFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLD---- 207 (863)
Q Consensus 133 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---- 207 (863)
..-+++.+.+..++ .+.+-+.|+.|+||+++|..++....-. ..-+. ..++.-.-.+.+...- .++
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~-~~~~~-------~~Cg~C~sC~~~~~g~-HPD~~~i 79 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ-QPQGH-------KSCGHCRGCQLMQAGT-HPDYYTL 79 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC-CCCCC-------CCCCCCHHHHHHHcCC-CCCEEEE
Confidence 34566777776655 4578899999999999999988765210 00000 0111111111111000 000
Q ss_pred -ccc--cCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCch-hhhhc-ccc
Q 048126 208 -ESW--KNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFL-EICGA-MKA 275 (863)
Q Consensus 208 -~~~--~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~-~~~ 275 (863)
+.. ....+++ ++.+.+.+ .+++=++|+|+++.. .....+...+.....++.+|++|.+. .+... ..-
T Consensus 80 ~p~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 80 TPEKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred ecccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 000 0011222 22233333 245668899998754 23344444444444566677666654 34322 222
Q ss_pred cceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 276 HEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 276 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
...+.+.+++.+++.+.+....+. -.+.+..+++.++|.|..+..+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~--------~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTM--------SQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 346789999999999888654221 1233678899999999755443
No 217
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.0002 Score=70.63 Aligned_cols=100 Identities=23% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccch--hhhcCCCCCEE
Q 048126 515 CPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPI--ELQKLVNLKCL 592 (863)
Q Consensus 515 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L 592 (863)
+.+.+.|++.||.+..+ ++..+|+.|.+|.|+-|+ +..+. .+..+.+|+.|+|+.|.|..+-. -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNk-IssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNK-ISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccc-cccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34455566666665554 234566666666666663 22332 34555666666666665554432 24556666666
Q ss_pred ecCCccccCCCcH----HHhhcCCCCcEEE
Q 048126 593 NLEYMYNLNQFPR----LVMSAFSKLQVLR 618 (863)
Q Consensus 593 ~l~~~~~l~~lp~----~~~~~L~~L~~L~ 618 (863)
-|..|+-...-+. .++.-|+||+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6655543333222 1344455555554
No 218
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.68 E-value=0.044 Score=61.83 Aligned_cols=196 Identities=17% Similarity=0.122 Sum_probs=116.1
Q ss_pred ccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHhhhcC-----CCCCCCEEEEEEeCCccCHHHHHH
Q 048126 128 TVGLESMFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLG-----APNDFDVVIWVVVSKDLQLEKIQE 197 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~~F~~~~wv~~s~~~~~~~~~~ 197 (863)
+-+|+.+..+|-+++.. +..+.+.|.|.+|+|||..+..|.+...+ .-..|+ .+.|..-.-....+++.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHH
Confidence 45899999999888742 23459999999999999999999986521 122343 34455455567899999
Q ss_pred HHHHHhCCCCccccCCChhHHHHHHHHHhc-----cCcEEEEEeccCCcc-----ccccccCCCCCCCCCcEEEEecC-c
Q 048126 198 KIGRRIGFLDESWKNGSLEDKASDILRILS-----KKKFLLLLDDIWERV-----DLTKVGVPFPDPENKSKIVFTTR-F 266 (863)
Q Consensus 198 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~-----~~~~~~~~l~~~~~gs~IivTtR-~ 266 (863)
.|..++.... .....-.+.+..++. .+..++++|+++... .+-.+.. +| ..++||++|-+= +
T Consensus 477 ~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-Wp-t~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 477 KIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-WP-TLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc-CC-cCCCCceEEEEecc
Confidence 9999997643 223344445555543 356888889886421 1111111 11 335677665432 1
Q ss_pred -hh---------hhhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHH
Q 048126 267 -LE---------ICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRA 332 (863)
Q Consensus 267 -~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 332 (863)
.+ ++..+ ....+...+.+.++-.++...+..+...-.+.-.+=++++|+...|..-.|+.+.-++
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11 11222 1235677888888888887776654421112223334566665555555555554433
No 219
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.015 Score=64.79 Aligned_cols=187 Identities=14% Similarity=0.185 Sum_probs=110.6
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH--
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR-- 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-- 202 (863)
+++||-+.-...|.+.+..++. +.....|+-|+||||+|+.++...- ..+ + ....+++.....+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN--C~~-----~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN--CEN-----G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc--CCC-----C-CCCCcchhhhhhHhhhcCCc
Confidence 4579999999999999987654 4667799999999999999988761 110 0 122333333344444332
Q ss_pred hCCCC-ccccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCch-hhh-hc
Q 048126 203 IGFLD-ESWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFL-EIC-GA 272 (863)
Q Consensus 203 l~~~~-~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~-~~ 272 (863)
+.+.. +......+++ ++.|.+.. +++.=..|+|+|+-. ..|..+...+.......+.|+.|++. .+. ..
T Consensus 88 ~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 11000 0001122222 22233322 245558889999753 45666655555444556666666554 332 22
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL 324 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 324 (863)
......|.++.++.++-...+...+....... ..+....|++..+|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCCChh
Confidence 23345789999999999999888876554222 24456667777777544
No 220
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.00097 Score=65.92 Aligned_cols=82 Identities=28% Similarity=0.303 Sum_probs=48.1
Q ss_pred hcCCCccEEEccCC--CccccCCccccccCCCCeEEccCCCccc---cchhhhcCCCCCEEecCCccccCCCc---HHHh
Q 048126 537 QFMPSLRVFNMSNN--HLLWKLPSGISTLVSLEHLDLSGTAITH---LPIELQKLVNLKCLNLEYMYNLNQFP---RLVM 608 (863)
Q Consensus 537 ~~l~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~L~~~~l~~---lp~~~~~l~~L~~L~l~~~~~l~~lp---~~~~ 608 (863)
-.|++|++|+++.| +....++-.+.++++|++|++++|+|+- ++ .+..+.||..|++.+|.... +- ..++
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 34556666666666 4444455555556777777777776653 22 35566777788888774422 22 2234
Q ss_pred hcCCCCcEEEee
Q 048126 609 SAFSKLQVLRIL 620 (863)
Q Consensus 609 ~~L~~L~~L~l~ 620 (863)
.-+++|.+|+-.
T Consensus 140 ~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 140 LLLPSLKYLDGC 151 (260)
T ss_pred HHhhhhcccccc
Confidence 556677666644
No 221
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.079 Score=56.62 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=56.8
Q ss_pred cCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCc-hhhhhcc-cccceEeecCCChHHHHHHHHHHhcccccC
Q 048126 228 KKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRF-LEICGAM-KAHEFLKVECLGPEDAWRLFRENLRRDVLD 303 (863)
Q Consensus 228 ~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 303 (863)
+++-++|+|+++.. .....+...+....+++.+|++|.+ ..+.... .-...+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 34558889999764 3344444444444556666655555 4443222 22357889999999999988764 11
Q ss_pred CCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 304 NHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 304 ~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
++ ...++..++|.|..+..+.
T Consensus 206 --~~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch----HHHHHHHcCCCHHHHHHHH
Confidence 11 2335778899997665543
No 222
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.66 E-value=0.0015 Score=58.85 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 223
>PRK06526 transposase; Provisional
Probab=96.65 E-value=0.0018 Score=66.37 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+..-+.++|++|+|||+||..+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 224
>PRK04296 thymidine kinase; Provisional
Probab=96.62 E-value=0.0017 Score=63.64 Aligned_cols=113 Identities=16% Similarity=0.037 Sum_probs=63.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhc
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILS 227 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (863)
.++.|+|..|.||||+|..++.+.. .+-..++++. ..++.+.....++.+++...+........+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4678899999999999999998872 2223344442 1112222234456666543322112334445555555 33
Q ss_pred cCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCchh
Q 048126 228 KKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFLE 268 (863)
Q Consensus 228 ~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~ 268 (863)
++.-+||+|.+.-. .+..++...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34558999999542 1122222111 235778999998854
No 225
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.62 E-value=0.014 Score=65.51 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=89.8
Q ss_pred CccchhHHHHHHHHHhc---C-------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHH
Q 048126 127 PTVGLESMFDKVWRCLG---E-------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQ 196 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~---~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 196 (863)
++.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.. ...| +-+.++ .+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KLF 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hhc
Confidence 35687776666654321 1 235678899999999999999999987 2222 222211 111
Q ss_pred HHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc----c----------ccccCCCCCCCCCcEEEE
Q 048126 197 EKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD----L----------TKVGVPFPDPENKSKIVF 262 (863)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~----------~~~~~~l~~~~~gs~Iiv 262 (863)
. .. ...+...+...+...-...+++|++|+++.... . ..+...+.....+.-||.
T Consensus 297 ~----~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 297 G----GI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred c----cc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 0 00 111112222222222234789999999964210 0 011111112223344556
Q ss_pred ecCchhh-----hhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 263 TTRFLEI-----CGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 263 TtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
||.+... .+...-+..+.++.-+.++-.++|+............ ..-...+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 7765432 1211234577888888999999998876543211100 112456666666543
No 226
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.61 E-value=0.005 Score=64.98 Aligned_cols=115 Identities=23% Similarity=0.258 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 048126 130 GLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 130 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 205 (863)
++....+...+++.. ...+-+.++|..|+|||.||..+++... ...+. +.|++++ .++..+....+-
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEHH------HHHHHHHHHHhc
Confidence 455555555555542 2456799999999999999999999983 33343 5566543 455555444321
Q ss_pred CCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--ccccc--ccCCC-CCC-CCCcEEEEecC
Q 048126 206 LDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTK--VGVPF-PDP-ENKSKIVFTTR 265 (863)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~--~~~~l-~~~-~~gs~IivTtR 265 (863)
.+..+ ..+.++ +-=||||||+..+ .+|.. +...+ ... ..+-.+|+||-
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 11112 122222 4558999999643 34532 32221 111 13445777775
No 227
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.60 E-value=0.0026 Score=67.37 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=40.1
Q ss_pred CccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|.++.++++++++.. ...++++++|++|+||||||+.+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999853 246789999999999999999999988
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.60 E-value=0.015 Score=70.00 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=90.9
Q ss_pred CccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 127 PTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
++.|.+..+++|.+++.- ...+.|.++|++|+|||++|+.+++.. ...| +.+..+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 467999999988877631 234578899999999999999999876 2222 222211
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc-------------cccccCCCCC-CCCCcE
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD-------------LTKVGVPFPD-PENKSK 259 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~~~l~~-~~~gs~ 259 (863)
.+. ... .......+...+.......+.+|++|+++.... ...+...+.. ...+..
T Consensus 247 ~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 111 000 111112222333334445678999999854210 1112111111 122333
Q ss_pred EEE-ecCchh-hhhcc----cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh
Q 048126 260 IVF-TTRFLE-ICGAM----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL 324 (863)
Q Consensus 260 Iiv-TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 324 (863)
++| ||.... +...+ .-...+.++..+.++-.++++..........+ .....+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 444 444332 21111 12345778888888888888865433221111 124667778877643
No 229
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.56 E-value=0.022 Score=57.80 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=55.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC------CEEEEEEeCCccCHHHHHHHHHHHhCCCCcc-------ccC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF------DVVIWVVVSKDLQLEKIQEKIGRRIGFLDES-------WKN 212 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~ 212 (863)
.-.++.|+|.+|+|||++|.+++... ...- ..++|++....++...+. .+++..+..... ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45799999999999999999998765 1222 567899987777665543 333333221100 012
Q ss_pred CChhHHHHHHHHHhc---c-CcEEEEEeccC
Q 048126 213 GSLEDKASDILRILS---K-KKFLLLLDDIW 239 (863)
Q Consensus 213 ~~~~~~~~~l~~~l~---~-kr~LlVlDdv~ 239 (863)
.+.++....+.+..+ . +.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 344555555554432 3 44588889874
No 230
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.55 E-value=0.023 Score=59.91 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=56.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc---ccCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES---WKNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (863)
.-+++-|+|++|+||||||.+++... ...-..++||+....++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45789999999999999999988776 2233568899877766643 34455543221 1223445555555
Q ss_pred HHHhcc-CcEEEEEeccC
Q 048126 223 LRILSK-KKFLLLLDDIW 239 (863)
Q Consensus 223 ~~~l~~-kr~LlVlDdv~ 239 (863)
...++. ..-++|+|.|.
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 554443 56689999985
No 231
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.52 E-value=0.0019 Score=63.18 Aligned_cols=128 Identities=20% Similarity=0.179 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeC----Ccc-----CHH----HHHH
Q 048126 131 LESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVS----KDL-----QLE----KIQE 197 (863)
Q Consensus 131 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s----~~~-----~~~----~~~~ 197 (863)
+..+-...++.|. ...++.+.|++|.|||.||.+.+-+. -....|+.++++.-. ++. +.. -...
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 3444555666665 55699999999999999999998766 334788888776421 111 000 0112
Q ss_pred HHHHHhCCCCccccCCChhHHHHH------HHHHhccC---cEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCc
Q 048126 198 KIGRRIGFLDESWKNGSLEDKASD------ILRILSKK---KFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRF 266 (863)
Q Consensus 198 ~i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~ 266 (863)
.+.+.+..-. .....+.+... -..+++++ ..+||+|++.+. ..+..+.. ..+.|||||++--.
T Consensus 82 p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD~ 155 (205)
T PF02562_consen 82 PIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE--
T ss_pred HHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecCc
Confidence 2222221110 11111111110 01244553 569999999875 34555533 34679999998755
Q ss_pred h
Q 048126 267 L 267 (863)
Q Consensus 267 ~ 267 (863)
.
T Consensus 156 ~ 156 (205)
T PF02562_consen 156 S 156 (205)
T ss_dssp -
T ss_pred e
Confidence 4
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=96.51 E-value=0.0042 Score=64.07 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+.|+|+.|+|||+||..++...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999998775
No 233
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.51 E-value=0.014 Score=58.39 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=37.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQE 197 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 197 (863)
.-+++.|+|.+|+|||++|.+++... ...-..++||+... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 45799999999999999999998876 23346789999875 55555443
No 234
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.49 E-value=0.04 Score=66.26 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=93.6
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
..+.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH---
Confidence 3457888888877776531 134568899999999999999999987 3333 222211
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--------c------cccccCCCCC--CCC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--------D------LTKVGVPFPD--PEN 256 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~------~~~~~~~l~~--~~~ 256 (863)
++ +... ...+...+...+...-+..+.+|++|+++... . ...+...+.. ...
T Consensus 522 -~l----~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 -EI----LSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -HH----hhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 11 1110 11122222223333334567999999986421 0 0111111211 123
Q ss_pred CcEEEEecCchhhhh-c-c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 257 KSKIVFTTRFLEICG-A-M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 257 gs~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
+.-||.||...+... . . .-+..+.++..+.++-.++|+............+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 445666665544321 1 1 2345678888899988899986654332122222 355667777653
No 235
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.49 E-value=0.089 Score=56.76 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 132 ESMFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 132 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.-.+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455667777765 467799999999999999999999988
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.45 E-value=0.021 Score=58.01 Aligned_cols=89 Identities=25% Similarity=0.287 Sum_probs=51.9
Q ss_pred HHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcccc
Q 048126 134 MFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWK 211 (863)
Q Consensus 134 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 211 (863)
.+..+.++... .+...+.++|.+|+|||+||..+++... ..-..+++++ ..++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 44455554432 2345788999999999999999999872 2223566664 34444444433321 1
Q ss_pred CCChhHHHHHHHHHhccCcEEEEEeccCCc
Q 048126 212 NGSLEDKASDILRILSKKKFLLLLDDIWER 241 (863)
Q Consensus 212 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 241 (863)
..+.. .+.+.+. +.=+||+||+...
T Consensus 150 ~~~~~----~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETSEE----QLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred cccHH----HHHHHhc-cCCEEEEeCCCCC
Confidence 11111 2333344 3448888999653
No 237
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.45 E-value=0.028 Score=55.45 Aligned_cols=169 Identities=15% Similarity=0.231 Sum_probs=93.0
Q ss_pred CCccchhHHHHH---HHHHhcCC------CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHH
Q 048126 126 EPTVGLESMFDK---VWRCLGEE------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQ 196 (863)
Q Consensus 126 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 196 (863)
+++||.+..+.+ |+++|.++ ..+-|..+|++|.|||.+|+++++.. +-.| +.+.. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vka-------t 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVKA-------T 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEech-------H
Confidence 346898876654 67777653 57889999999999999999999987 2232 22111 1
Q ss_pred HHHHHHhCCCCccccCCChhHHHHHHHHHhc-cCcEEEEEeccCCc----------ccccc----ccCCCC--CCCCCcE
Q 048126 197 EKIGRRIGFLDESWKNGSLEDKASDILRILS-KKKFLLLLDDIWER----------VDLTK----VGVPFP--DPENKSK 259 (863)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~----------~~~~~----~~~~l~--~~~~gs~ 259 (863)
.-|.+..| +....+..+.+.-+ .-++++.+|.++.. .+..+ +...+. ..+.|..
T Consensus 186 ~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11222111 11223333333332 36899999987642 11111 111121 1234555
Q ss_pred EEEecCchhhhhc-cc--ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc
Q 048126 260 IVFTTRFLEICGA-MK--AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 260 IivTtR~~~v~~~-~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 322 (863)
.|-.|.+.++... .. -...++..--+++|-.+++...+..-... +..-.+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp----v~~~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP----VDADLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc----cccCHHHHHHHhCCC
Confidence 5666665554321 11 12346666667888888888777542211 112245666666664
No 238
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.42 E-value=0.025 Score=56.98 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=32.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ 191 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 191 (863)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 457899999999999999999988762 2234678887655443
No 239
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.41 E-value=0.014 Score=60.04 Aligned_cols=101 Identities=25% Similarity=0.319 Sum_probs=59.6
Q ss_pred HHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHhhhcCCC----CCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc-
Q 048126 137 KVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAP----NDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES- 209 (863)
Q Consensus 137 ~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~- 209 (863)
.|-++|..+ .-.+.=|+|.+|+|||.|+.+++-.. ... ..=..++||+-...|+..++. +|+++.+...+.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~ 103 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEI 103 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchh
Confidence 344445332 34699999999999999999887554 111 122478999998889887775 466665543211
Q ss_pred ------ccCCChhHHHHHH---HHHhcc-CcEEEEEeccC
Q 048126 210 ------WKNGSLEDKASDI---LRILSK-KKFLLLLDDIW 239 (863)
Q Consensus 210 ------~~~~~~~~~~~~l---~~~l~~-kr~LlVlDdv~ 239 (863)
....+.+++...+ ...+.+ +=-|||+|.+-
T Consensus 104 l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 104 LDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred hhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchH
Confidence 0122333433333 333333 44588888873
No 240
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.41 E-value=0.0092 Score=61.04 Aligned_cols=93 Identities=18% Similarity=0.295 Sum_probs=57.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC-CEEEEEEeCCccC-HHHHHHHHHHHhCCCC-----ccccCCChh--
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF-DVVIWVVVSKDLQ-LEKIQEKIGRRIGFLD-----ESWKNGSLE-- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 216 (863)
+-..++|.|..|+||||||+.+++.. +.+| +.++++-+.+... +.++.+.+.+.-.... ...+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34578999999999999999999987 3344 4567777776653 4566666654321110 000111111
Q ss_pred ---HHHHHHHHHh---ccCcEEEEEeccCCc
Q 048126 217 ---DKASDILRIL---SKKKFLLLLDDIWER 241 (863)
Q Consensus 217 ---~~~~~l~~~l---~~kr~LlVlDdv~~~ 241 (863)
..+-.+.+++ +++.+|+|+||+...
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1222344555 378999999998653
No 241
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.41 E-value=0.01 Score=60.61 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=39.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCC----CCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPND----FDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.-.++.|+|.+|+|||++|.+++-.. ..... -..++|++....++...+. ++++..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~ 78 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFG 78 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhc
Confidence 45799999999999999999997554 11221 3578999988777655443 3444443
No 242
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.39 E-value=0.012 Score=71.66 Aligned_cols=60 Identities=27% Similarity=0.384 Sum_probs=44.0
Q ss_pred CCccchhHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC
Q 048126 126 EPTVGLESMFDKVWRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK 188 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 188 (863)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.++... ...-...+.+.++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 45789999999999888531 13568899999999999999999876 22223445555554
No 243
>PRK04132 replication factor C small subunit; Provisional
Probab=96.33 E-value=0.065 Score=63.73 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=93.1
Q ss_pred c--CCCCcHHHHHHHHHhhhcCCCCCC-CEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCc
Q 048126 154 G--MGGVGKTTLLTKINNKLLGAPNDF-DVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKK 230 (863)
Q Consensus 154 G--~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr 230 (863)
| +.++||||+|..++++.- .+.+ ..++-+++|+..++..+. +++..+....+ . -..+.
T Consensus 571 G~lPh~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--~--------------~~~~~ 631 (846)
T PRK04132 571 GNLPTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIR-EKVKEFARTKP--I--------------GGASF 631 (846)
T ss_pred CCCCCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--c--------------CCCCC
Confidence 7 789999999999999861 1223 246777777655555443 33332211100 0 01245
Q ss_pred EEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCch-hhhhcc-cccceEeecCCChHHHHHHHHHHhcccccCCCC
Q 048126 231 FLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFL-EICGAM-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHP 306 (863)
Q Consensus 231 ~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~ 306 (863)
-++|+|+++... +...+...+......+++|++|.+. .+.... .....+.+.+++.++-...+...+.......
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-- 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-- 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--
Confidence 799999998753 3444444343333456677666553 332221 2235789999999999888877654322111
Q ss_pred ChHHHHHHHHHHhCCchhHHHHHH
Q 048126 307 DIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 307 ~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
-.+....|++.++|-+..+..+-
T Consensus 710 -~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 710 -TEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred -CHHHHHHHHHHcCCCHHHHHHHH
Confidence 24578899999999885544433
No 244
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.31 E-value=0.14 Score=56.09 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|.++|..|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 245
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.30 E-value=0.0085 Score=58.12 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=29.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEE
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWV 184 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 184 (863)
...+|.+.|+.|+||||+|+.++... ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45699999999999999999999988 3445555555
No 246
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.30 E-value=0.004 Score=61.52 Aligned_cols=125 Identities=15% Similarity=0.027 Sum_probs=65.9
Q ss_pred hhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc------hhhccCCCcEEEEeccccc
Q 048126 687 LACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT------WLVFAPSLKSIVVLSCCNM 760 (863)
Q Consensus 687 l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~------~l~~l~~L~~L~l~~~~~l 760 (863)
+....+|+.+.+..|.. . |..+......+...+.+|+.|+|.++. ++... .+..-+.|+.|.+.+|- +
T Consensus 181 l~sh~~lk~vki~qNgI-r---pegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDCl-l 254 (388)
T COG5238 181 LESHENLKEVKIQQNGI-R---PEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCL-L 254 (388)
T ss_pred HHhhcCceeEEeeecCc-C---cchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchh-h
Confidence 44456788888876532 2 221110011222457899999999864 33221 11234678999999984 2
Q ss_pred hhhccccccccccCCCCCCCCcCCccceeccCCCccccccc-------cCCCCCCCcceEeecCCCCCCCC
Q 048126 761 EQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCIN-------WEALAFPNLKEIRVEGCPKLFKL 824 (863)
Q Consensus 761 ~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~-------~~~~~~p~L~~L~i~~C~~L~~l 824 (863)
..-+..+... .+.-..+|+|..|.+.....-..+. ....++|-|..|.+.+ +.++.+
T Consensus 255 s~~G~~~v~~------~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~ 318 (388)
T COG5238 255 SNEGVKSVLR------RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKEL 318 (388)
T ss_pred ccccHHHHHH------HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhH
Confidence 2221111000 1234457888888887643222211 1345678888888776 345443
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0095 Score=66.73 Aligned_cols=74 Identities=28% Similarity=0.216 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCCccccCCChhHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL--QLEKIQEKIGRRIGFLDESWKNGSLEDKASDIL 223 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (863)
...-|.|.|+.|+|||+||+++++... ++..-++.+|+++.-. ..+.+++.+- ..+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHH
Confidence 345788999999999999999999983 6666678888877542 2333333222 2233
Q ss_pred HHhccCcEEEEEeccCC
Q 048126 224 RILSKKKFLLLLDDIWE 240 (863)
Q Consensus 224 ~~l~~kr~LlVlDdv~~ 240 (863)
+.+.-.+-+|||||++-
T Consensus 489 e~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHhhCCcEEEEcchhh
Confidence 45566789999999863
No 248
>PRK06696 uridine kinase; Validated
Probab=96.25 E-value=0.0067 Score=61.31 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 130 GLESMFDKVWRCLG---EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 130 Gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|+.++...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46677777777774 3567899999999999999999999887
No 249
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.25 E-value=0.0045 Score=57.38 Aligned_cols=42 Identities=33% Similarity=0.352 Sum_probs=32.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHH
Q 048126 150 IGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQE 197 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 197 (863)
|.++|.+|+|||+||+.++... .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 5689999999999999999887 11 345567888877777654
No 250
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.24 E-value=0.009 Score=72.14 Aligned_cols=46 Identities=24% Similarity=0.396 Sum_probs=37.7
Q ss_pred CCccchhHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE-------E--QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||.+|+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999888742 1 23478899999999999999998876
No 251
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.22 E-value=0.025 Score=53.32 Aligned_cols=125 Identities=20% Similarity=0.184 Sum_probs=72.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEE---------------------eCCcc--------------
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVV---------------------VSKDL-------------- 190 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---------------------~s~~~-------------- 190 (863)
.-.++.++|+.|.||||+.+.+|... +. -...+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e-~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE-RP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh-cC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45689999999999999999999886 21 12233332 11221
Q ss_pred -------CHHHH---HHHHHHHhCCCCcc----ccCCChhHHHHHHHHHhccCcEEEEEecc----CCccccccccCCCC
Q 048126 191 -------QLEKI---QEKIGRRIGFLDES----WKNGSLEDKASDILRILSKKKFLLLLDDI----WERVDLTKVGVPFP 252 (863)
Q Consensus 191 -------~~~~~---~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~~~l~ 252 (863)
...++ ....++..++.... .+.+.-++..-.|.+.+-+++-+|+-|.- +....|+-+...-.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 12222 22223333332210 01223344445667777888999999964 33333443322222
Q ss_pred CCCCCcEEEEecCchhhhhccc
Q 048126 253 DPENKSKIVFTTRFLEICGAMK 274 (863)
Q Consensus 253 ~~~~gs~IivTtR~~~v~~~~~ 274 (863)
-+..|.-|+++|-+..+...+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhcc
Confidence 3556999999999998876653
No 252
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.05 Score=61.86 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=64.7
Q ss_pred CCccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
+++=|.++.+++|.+-+.- .+.+-|-++|++|.|||-+|++|+... . .-|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----
Confidence 3456899999999988742 135678899999999999999999887 1 345665544
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
+++..- ...+++.+.+.+.+.=..+++.|.||.++.
T Consensus 740 ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 111111 234455566666666667999999999875
No 253
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.21 E-value=0.013 Score=61.65 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=57.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc---ccCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES---WKNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (863)
.-+++-|+|++|+||||||.+++.... ..-..++||+.-..++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457999999999999999999887762 233567899776655543 35555543321 1223445555555
Q ss_pred HHHhc-cCcEEEEEeccCC
Q 048126 223 LRILS-KKKFLLLLDDIWE 240 (863)
Q Consensus 223 ~~~l~-~kr~LlVlDdv~~ 240 (863)
...++ +..-++|+|.|..
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55444 3566899999853
No 254
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.025 Score=61.00 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=73.3
Q ss_pred ccchhHHHHHHHHHhcC-CCcc-EEEEEcCCCCcHHHHHHHHHhhhcCCCC------------------CCCEEEEEEeC
Q 048126 128 TVGLESMFDKVWRCLGE-EQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPN------------------DFDVVIWVVVS 187 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~~-~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~F~~~~wv~~s 187 (863)
++|-+....++..+... ++.+ .+-++|+.|+||||+|..+++....... ....+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56777788888888864 3344 5999999999999999999988721000 12334444444
Q ss_pred CccC---HHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEE
Q 048126 188 KDLQ---LEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVF 262 (863)
Q Consensus 188 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv 262 (863)
.... ..+..+.+.+....... .++.-++++|+++... .-..+...+......+++|+
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 4433 24444444444433210 2567789999997642 22333333334455677888
Q ss_pred ecCc
Q 048126 263 TTRF 266 (863)
Q Consensus 263 TtR~ 266 (863)
+|..
T Consensus 145 ~~n~ 148 (325)
T COG0470 145 ITND 148 (325)
T ss_pred EcCC
Confidence 7774
No 255
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.053 Score=62.65 Aligned_cols=174 Identities=17% Similarity=0.213 Sum_probs=98.2
Q ss_pred CCccchhHHHHH---HHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDK---VWRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~---l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
.++.|.|+.+++ ++++|.++ -++-+-++|++|+|||-||++++-.. . +=|+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH----
Confidence 345687765555 55556542 25678899999999999999999887 2 234555543
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHh-ccCcEEEEEeccCCccc-----------------cccccCCCCCCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRIL-SKKKFLLLLDDIWERVD-----------------LTKVGVPFPDPE 255 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~-----------------~~~~~~~l~~~~ 255 (863)
++++.+.... ..+...+...- ...+.++.+|+++...- +.++...+....
T Consensus 379 ----EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ----EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ----HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 2222222111 12233333222 24678899998864311 112221122212
Q ss_pred --CCcEEEEecCchhhhhc--c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHH
Q 048126 256 --NKSKIVFTTRFLEICGA--M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLAL 326 (863)
Q Consensus 256 --~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 326 (863)
.+.-++-+|...++.+. + .-+..+.++.=+...-.++|.-++...... .+..++++ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 22333445555554211 1 224567788888888889998887654421 34456666 888888877553
No 256
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.18 E-value=0.0081 Score=72.86 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=60.1
Q ss_pred CCccchhHHHHHHHHHhcC-------C-C-ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------E-Q-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQ 196 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------~-~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 196 (863)
..++|-+..++.|.+.+.. + + ...+.++|+.|+|||+||+.+++.. -..-...+-+..+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccHH
Confidence 4578999999999888752 1 1 3456789999999999999999876 1212234444444432222221
Q ss_pred HHHHHHhCCCCccccCCChhHHHHHHHHHhccCcE-EEEEeccCC
Q 048126 197 EKIGRRIGFLDESWKNGSLEDKASDILRILSKKKF-LLLLDDIWE 240 (863)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~ 240 (863)
+ -++.+. .....+. ...+.+.++.++| +++||++..
T Consensus 586 ~----l~g~~~-gyvg~~~---~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 586 K----LIGSPP-GYVGYNE---GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred H----hcCCCC-cccCcCc---cchHHHHHHhCCCeEEEECChhh
Confidence 1 122211 1111111 1234455555654 888999975
No 257
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.18 E-value=0.036 Score=61.12 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=50.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCccc-cCCChhHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLDESW-KNGSLEDKASDIL 223 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 223 (863)
...++.++|.+|+||||.|..++... ..+..+ .++.|++... +...+.+...+.+.+.+.... ...+..+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 46799999999999999999998875 111222 3444443321 122344455556665543211 1123334443333
Q ss_pred HHhccCcE-EEEEeccC
Q 048126 224 RILSKKKF-LLLLDDIW 239 (863)
Q Consensus 224 ~~l~~kr~-LlVlDdv~ 239 (863)
+....+.| ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 34444445 77777664
No 258
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.18 E-value=0.0059 Score=68.01 Aligned_cols=46 Identities=26% Similarity=0.426 Sum_probs=40.6
Q ss_pred CCccchhHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLG------EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+++|.++.+++|++.|. +.+.+++.++|++|+||||||+.+++-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 357899999999999983 3466799999999999999999999987
No 259
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.17 E-value=0.012 Score=66.36 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=55.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
.-++.-++|++|+||||||..+++.. .|. ++=|.+|++-+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GYs-VvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GYS-VVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cce-EEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45789999999999999999999875 443 667888888888887777776664322 2
Q ss_pred hc--cCcEEEEEeccCCc
Q 048126 226 LS--KKKFLLLLDDIWER 241 (863)
Q Consensus 226 l~--~kr~LlVlDdv~~~ 241 (863)
+. +++.-||+|.++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 21 57888999998754
No 260
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.022 Score=61.26 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=53.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
+-.++.++|+.|+||||++.+++... ..+.....+.+|+... .....+.++...+.++.+... ..+..++...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l~- 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLALA- 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHHH-
Confidence 34699999999999999999999876 1122223566665332 224456667777777765421 222233333333
Q ss_pred HhccCcEEEEEeccC
Q 048126 225 ILSKKKFLLLLDDIW 239 (863)
Q Consensus 225 ~l~~kr~LlVlDdv~ 239 (863)
.+.++ =++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34455 455588874
No 261
>PRK06921 hypothetical protein; Provisional
Probab=96.14 E-value=0.011 Score=61.09 Aligned_cols=39 Identities=33% Similarity=0.416 Sum_probs=29.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEe
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVV 186 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 186 (863)
....+.++|..|+|||+||..+++... +..-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456789999999999999999999872 221345677764
No 262
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.14 E-value=0.034 Score=56.79 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=35.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEK 198 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 198 (863)
.-+++.|.|.+|+|||++|.++..... ..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHH
Confidence 567999999999999999999876641 2345688888765 44455554
No 263
>PRK10867 signal recognition particle protein; Provisional
Probab=96.13 E-value=0.039 Score=60.85 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|.++|.+|+||||.|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999988776
No 264
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.12 E-value=0.027 Score=57.80 Aligned_cols=91 Identities=26% Similarity=0.272 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCc
Q 048126 130 GLESMFDKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDE 208 (863)
Q Consensus 130 Gr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 208 (863)
++...+..+.+.... ++..-+.++|.+|+|||.||.++.++.. +..+ .+.|++ ..++..++.......
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~~------~~el~~~Lk~~~~~~-- 155 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFIT------APDLLSKLKAAFDEG-- 155 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEEE------HHHHHHHHHHHHhcC--
Confidence 344444444433311 3667889999999999999999999982 3333 455664 445566665544321
Q ss_pred cccCCChhHHHHHHHHHhccCcEEEEEeccCC
Q 048126 209 SWKNGSLEDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
.....+.+.++ +-=||||||+..
T Consensus 156 --------~~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 156 --------RLEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred --------chHHHHHHHhh-cCCEEEEecccC
Confidence 11222222222 234899999864
No 265
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.12 E-value=0.032 Score=57.59 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcccc----
Q 048126 136 DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWK---- 211 (863)
Q Consensus 136 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~---- 211 (863)
++..+++...+..+|.|+|.+|+|||||+..+.+.. ..... ++.+ ..+..+..+. ..+...+.+.-+..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l---~~~~~-~~VI-~gD~~t~~Da--~rI~~~g~pvvqi~tG~~ 165 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL---KDSVP-CAVI-EGDQQTVNDA--ARIRATGTPAIQVNTGKG 165 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh---ccCCC-EEEE-CCCcCcHHHH--HHHHhcCCcEEEecCCCC
Confidence 334455555688999999999999999999999986 23332 2222 2222222221 12333333221111
Q ss_pred -CCChhHHHHHHHHHhccCcEEEEEeccCC
Q 048126 212 -NGSLEDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 212 -~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
......+...+...-....=++|+++|-+
T Consensus 166 Chl~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 166 CHLDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred CcCcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 11223344445544334446778899865
No 266
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.12 E-value=0.022 Score=55.08 Aligned_cols=75 Identities=28% Similarity=0.449 Sum_probs=43.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
...-+.++|..|+|||.||..+.+... ...+ .+.|++ ..+++..+-..- ........ .+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~------~~~L~~~l~~~~-------~~~~~~~~----~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFIT------ASDLLDELKQSR-------SDGSYEEL----LKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCHH----HHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEee------cCceeccccccc-------cccchhhh----cCc
Confidence 446799999999999999999998873 2333 356664 344554443211 11122222 223
Q ss_pred hccCcEEEEEeccCCc
Q 048126 226 LSKKKFLLLLDDIWER 241 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~ 241 (863)
+. +-=||||||+...
T Consensus 106 l~-~~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 LK-RVDLLILDDLGYE 120 (178)
T ss_dssp HH-TSSCEEEETCTSS
T ss_pred cc-cccEeccccccee
Confidence 33 3457889999653
No 267
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.11 E-value=0.024 Score=59.40 Aligned_cols=88 Identities=24% Similarity=0.271 Sum_probs=49.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
..++|+|+|+.|+||||++..++... ..+..-..+..|+..... .....+......++.+.. ...+..++...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH
Confidence 45699999999999999999998876 212111245666644321 223344444555554432 12233344444433
Q ss_pred HhccCcEEEEEecc
Q 048126 225 ILSKKKFLLLLDDI 238 (863)
Q Consensus 225 ~l~~kr~LlVlDdv 238 (863)
+.+ .=+|++|..
T Consensus 270 -~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 -LRD-KDLILIDTA 281 (282)
T ss_pred -ccC-CCEEEEeCC
Confidence 333 347777754
No 268
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.015 Score=56.87 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=45.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
++.+|+|.|.+|+||||+|+.++..+ +..+ +.-++...-+ ...-.....+......+.....+.+-..+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~--~~~I~~D~YY-k~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEK--VVVISLDDYY-KDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCc--ceEeeccccc-cchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999998 3332 1222211111 1111112222222222222444566677778888
Q ss_pred hccCc
Q 048126 226 LSKKK 230 (863)
Q Consensus 226 l~~kr 230 (863)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 269
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.09 E-value=0.34 Score=52.18 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=40.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL--QLEKIQEKIGRRIGFLD 207 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~ 207 (863)
.+.||-.+|.-|.||||-|-++++... + ....+-+...+.+ ...+.++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---H-cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 467899999999999999999999883 2 2223333333333 34566788888887654
No 270
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.017 Score=62.64 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=35.2
Q ss_pred cchhH---HHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 129 VGLES---MFDKVWRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 129 vGr~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-|-|+ ++++|+++|.++ =++-|.++|++|.|||-||++|+...
T Consensus 307 kG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 307 KGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 46654 677888888763 25678899999999999999999887
No 271
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.05 E-value=0.033 Score=58.95 Aligned_cols=100 Identities=21% Similarity=0.272 Sum_probs=60.3
Q ss_pred HHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCC----CCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc-
Q 048126 138 VWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAP----NDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW- 210 (863)
Q Consensus 138 l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~- 210 (863)
+-++|.. ..-+++-|+|.+|+|||+|+.+++-.. ... ..=..++||+....++.+++.+ ++++++...+..
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l 162 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVL 162 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhc
Confidence 3344543 245788999999999999999876543 111 1124789999988888888754 567776543210
Q ss_pred ------cCCChhHHH---HHHHHHhc-cCcEEEEEeccC
Q 048126 211 ------KNGSLEDKA---SDILRILS-KKKFLLLLDDIW 239 (863)
Q Consensus 211 ------~~~~~~~~~---~~l~~~l~-~kr~LlVlDdv~ 239 (863)
...+.++.. ..+...+. .+--|||+|.+.
T Consensus 163 ~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 163 DNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred CcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 111233333 23333333 344578888874
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.0077 Score=55.03 Aligned_cols=35 Identities=40% Similarity=0.456 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEE
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWV 184 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 184 (863)
.-|+|.|++|+||||+++.+++..+ .+.|...-++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~--~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR--EKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH--hcCceeeeEE
Confidence 4689999999999999999999883 3346544333
No 273
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.04 E-value=0.023 Score=55.46 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=36.5
Q ss_pred CCccchhHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLG----EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.|...+.+++--. .-...-|-+||.-|+|||+|++++.+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 457898888888776432 2344567799999999999999999988
No 274
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.01 E-value=0.026 Score=54.52 Aligned_cols=89 Identities=20% Similarity=0.147 Sum_probs=45.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCcc-ccCCChhHHH-HHHHHH
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLDES-WKNGSLEDKA-SDILRI 225 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~l~~~ 225 (863)
++.++|++|+||||+++.++.... +..+ .++.+..... ....+.+...+.+.+..... ....+..+.. +.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~--~~g~-~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK--KKGK-KVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCC-cEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 688999999999999999998872 1222 3444543321 12233344444444432111 0112333333 233333
Q ss_pred hccCcEEEEEeccCC
Q 048126 226 LSKKKFLLLLDDIWE 240 (863)
Q Consensus 226 l~~kr~LlVlDdv~~ 240 (863)
..+..-++|+|..-.
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 333333566776543
No 275
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.23 Score=53.55 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=82.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhc
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILS 227 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (863)
|--.++|++|.|||++..++++.. .|+..- +..+...+-.+ |+..|.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n~d---------------------------Lr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLDSD---------------------------LRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCcHH---------------------------HHHHHH
Confidence 445789999999999999999987 455332 11111111111 222222
Q ss_pred --cCcEEEEEeccCCcccc-----------c---------cccCCCC--CCCC-CcEEE-EecCchhh-----hhccccc
Q 048126 228 --KKKFLLLLDDIWERVDL-----------T---------KVGVPFP--DPEN-KSKIV-FTTRFLEI-----CGAMKAH 276 (863)
Q Consensus 228 --~kr~LlVlDdv~~~~~~-----------~---------~~~~~l~--~~~~-gs~Ii-vTtR~~~v-----~~~~~~~ 276 (863)
..+-+||+.|++-..+. . -+...+. +... +-||| +||-..+- .+.-..+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 24678888888642110 1 0111111 1112 34565 56665443 2211234
Q ss_pred ceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhc
Q 048126 277 EFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMT 334 (863)
Q Consensus 277 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 334 (863)
..+.|..-+.+....||....+... .+ .++.+|.+.-.|.-+.=..++..|-
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHh
Confidence 4678999999999999999887643 12 3466666666666555455554443
No 276
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.076 Score=56.62 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+.+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998875
No 277
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.00 E-value=0.038 Score=52.56 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ 191 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 191 (863)
++.|+|.+|+||||++..++... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 36799999999999999999887 22345678887765543
No 278
>PRK09354 recA recombinase A; Provisional
Probab=95.97 E-value=0.021 Score=60.60 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=58.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc---ccCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES---WKNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (863)
.-+++-|+|+.|+||||||.+++.... ..-..++||+.-..++.. .+++++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457899999999999999999887762 233578899887776653 45555543321 1223455555555
Q ss_pred HHHhcc-CcEEEEEeccCC
Q 048126 223 LRILSK-KKFLLLLDDIWE 240 (863)
Q Consensus 223 ~~~l~~-kr~LlVlDdv~~ 240 (863)
...++. ..-+||+|.|..
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 555543 566899999853
No 279
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.019 Score=66.67 Aligned_cols=153 Identities=20% Similarity=0.271 Sum_probs=86.7
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC-----CEEEEEEeCCccCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF-----DVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-----~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
++.+||+.++.++++.|....-.--.++|-+|||||++|.-++.+.. .+.- +..++. .|+..+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s-----LD~g~L----- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS-----LDLGSL----- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE-----ecHHHH-----
Confidence 46899999999999999754333334789999999999988888762 1111 111111 011111
Q ss_pred HHhCCCCccccCCChhHHHHHHHHHhc-cCcEEEEEeccCCccc----------cccccCCCCCCCCC-cE-EEEecCch
Q 048126 201 RRIGFLDESWKNGSLEDKASDILRILS-KKKFLLLLDDIWERVD----------LTKVGVPFPDPENK-SK-IVFTTRFL 267 (863)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~----------~~~~~~~l~~~~~g-s~-IivTtR~~ 267 (863)
.... .-....+++...+.+.++ .++.+|.+|.++.... -..+..| .-+.| -+ |--||-++
T Consensus 238 --vAGa---kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKP--aLARGeL~~IGATT~~E 310 (786)
T COG0542 238 --VAGA---KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKP--ALARGELRCIGATTLDE 310 (786)
T ss_pred --hccc---cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHH--HHhcCCeEEEEeccHHH
Confidence 1000 023445566665555554 4589999999875321 1122222 12223 33 44555443
Q ss_pred hh------hhcccccceEeecCCChHHHHHHHHHHh
Q 048126 268 EI------CGAMKAHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 268 ~v------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
.- +....-...+.++.-+.+++...++...
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 21 1112234567888888888888877543
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.95 E-value=0.039 Score=59.85 Aligned_cols=96 Identities=28% Similarity=0.369 Sum_probs=55.3
Q ss_pred HHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---
Q 048126 136 DKVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW--- 210 (863)
Q Consensus 136 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--- 210 (863)
.++-+.|..+ .-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++ ..-+..++...+..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~ 142 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLL 142 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEE
Confidence 3444444332 346999999999999999999998762 22346788876443 3333 22244555433221
Q ss_pred cCCChhHHHHHHHHHhccCcEEEEEeccCC
Q 048126 211 KNGSLEDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
...+.+++.+.+. +.+.-++|+|.+..
T Consensus 143 ~e~~le~I~~~i~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 143 AETNLEDILASIE---ELKPDLVIIDSIQT 169 (372)
T ss_pred ccCcHHHHHHHHH---hcCCcEEEEcchHH
Confidence 1122333333332 23666888998843
No 281
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.064 Score=57.47 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
+.++|+++|++|+||||++..++.... ...+ .+.+++.... ....+-++..++.++.+.. ...+..++...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 457999999999999999999988772 2222 3445554321 1233334455555554431 22344555555544
Q ss_pred Hhcc-CcEEEEEeccCC
Q 048126 225 ILSK-KKFLLLLDDIWE 240 (863)
Q Consensus 225 ~l~~-kr~LlVlDdv~~ 240 (863)
.-.. +.=++++|-.-.
T Consensus 315 lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 315 FKEEARVDYILIDTAGK 331 (436)
T ss_pred HHhccCCCEEEEeCccc
Confidence 3222 234677787643
No 282
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.021 Score=52.29 Aligned_cols=45 Identities=29% Similarity=0.505 Sum_probs=35.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLD 207 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 207 (863)
+|.|-|++|.||||+|+.+++.. . ..+ | +.-.+++++++..++.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-g----l~~---v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-G----LKL---V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-C----Cce---e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987 1 111 1 33468899999888754
No 283
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.94 E-value=0.28 Score=49.25 Aligned_cols=209 Identities=13% Similarity=0.161 Sum_probs=116.2
Q ss_pred CccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCC---CCCCCEEEEEEeCCc----------c---
Q 048126 127 PTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGA---PNDFDVVIWVVVSKD----------L--- 190 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~----------~--- 190 (863)
...++++....+......++..-.-++|+.|.||-|.+..+.+..-.+ +-.-+..-|.+-|.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 467888888888888776778888999999999999888776664211 122344555543332 1
Q ss_pred --------CHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEE-EEEeccCCc--cccccccCCCCCCCCCcE
Q 048126 191 --------QLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFL-LLLDDIWER--VDLTKVGVPFPDPENKSK 259 (863)
Q Consensus 191 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~L-lVlDdv~~~--~~~~~~~~~l~~~~~gs~ 259 (863)
.-+.+.++++++++...+- +.-..+.|= +|+-.+++. ++-..++.....-.+.+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi--------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI--------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch--------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 1122333444333221100 011124553 344444321 111122111112234567
Q ss_pred EEEecCchh--hhhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCC-
Q 048126 260 IVFTTRFLE--ICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCK- 336 (863)
Q Consensus 260 IivTtR~~~--v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~- 336 (863)
+|+...+.. +...-...-.+++...+++|-...+++.+......-+ .+++.+|+++++|.---...+-..++-+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 765433211 1111111235789999999999999988766543222 7889999999998755444444443321
Q ss_pred ---------CChhHHHHHHHHHHhc
Q 048126 337 ---------KTTQEWHHAIQILRRS 352 (863)
Q Consensus 337 ---------~~~~~w~~~l~~l~~~ 352 (863)
-..-+|+-++.++...
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHH
Confidence 2456899888776544
No 284
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.92 E-value=0.02 Score=53.56 Aligned_cols=116 Identities=22% Similarity=0.209 Sum_probs=61.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEe---CCccCHHHHHHHHHHHh-----CCCCccccCCChhH--
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVV---SKDLQLEKIQEKIGRRI-----GFLDESWKNGSLED-- 217 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~---s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~-- 217 (863)
..|-|++..|.||||.|...+-+.. ...+. +.+|.. ....+-..+++.+ ..+ +... .+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~~-v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~-~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGYR-VGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGF-FWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCCe-EEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCC-ccCCCChHHHH
Confidence 5788899999999999999988762 33443 344332 2233444444443 111 1000 001111111
Q ss_pred -----HHHHHHHHhcc-CcEEEEEeccCCc-----cccccccCCCCCCCCCcEEEEecCchh
Q 048126 218 -----KASDILRILSK-KKFLLLLDDIWER-----VDLTKVGVPFPDPENKSKIVFTTRFLE 268 (863)
Q Consensus 218 -----~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~~ 268 (863)
.....++.+.. +-=|||||++-.. .+.+.+...+.....+..||+|.|+..
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12223334444 4459999998543 223334333444445678999999853
No 285
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.91 E-value=0.011 Score=61.16 Aligned_cols=136 Identities=16% Similarity=0.203 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEE----EEeCCccC---------HHHHH
Q 048126 130 GLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIW----VVVSKDLQ---------LEKIQ 196 (863)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w----v~~s~~~~---------~~~~~ 196 (863)
+|..+..--+++|.++++..|.+.|.+|.|||.||-+..=..--.+..|..++- +.++++.. +.-.+
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 466666777888999999999999999999998887653322112344443321 22333321 11122
Q ss_pred HHHHHHhCCCCccccCCChhHHHHHHH----------HHhccC---cEEEEEeccCCccccccccCCCCCCCCCcEEEEe
Q 048126 197 EKIGRRIGFLDESWKNGSLEDKASDIL----------RILSKK---KFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFT 263 (863)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~----------~~l~~k---r~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivT 263 (863)
..|..-+..-... .... ....+.+. .+++++ +-++|+|...+... .++...+...+.||||+.|
T Consensus 308 q~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl~ 384 (436)
T COG1875 308 QAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVLT 384 (436)
T ss_pred HHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEEEc
Confidence 2222222110000 0011 22222221 133443 46899999976421 2233334457889999998
Q ss_pred cCchh
Q 048126 264 TRFLE 268 (863)
Q Consensus 264 tR~~~ 268 (863)
--..+
T Consensus 385 gd~aQ 389 (436)
T COG1875 385 GDPAQ 389 (436)
T ss_pred CCHHH
Confidence 75443
No 286
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.41 Score=56.30 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=53.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
..+|+++|+.|+||||.+.+++... ........+..++... .....+.++...+.++++.. ...+..++...+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 4699999999999999999998776 2122223455555432 11244566667777776442 2234455544444 3
Q ss_pred hccCcEEEEEeccC
Q 048126 226 LSKKKFLLLLDDIW 239 (863)
Q Consensus 226 l~~kr~LlVlDdv~ 239 (863)
++++. +|++|=.-
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 44443 67777664
No 287
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.0046 Score=61.26 Aligned_cols=104 Identities=27% Similarity=0.344 Sum_probs=75.8
Q ss_pred ccceEEEEeccccccccccCCCCCccceEEccCC--ccc-cccchhhhcCCCccEEEccCCCcc--ccCCccccccCCCC
Q 048126 493 WRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDN--SLK-MIAGDFFQFMPSLRVFNMSNNHLL--WKLPSGISTLVSLE 567 (863)
Q Consensus 493 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~l~-~~~~~~~~~l~~L~~L~L~~~~~~--~~lp~~i~~l~~L~ 567 (863)
+..+..+++.+..+..+..++.+++|+.|.++.| .+. .++. ....+++|++|++++|++- ..++ .+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccc-hhhhhcchh
Confidence 3467777777777777888899999999999999 333 2222 2566799999999999543 2222 346778889
Q ss_pred eEEccCCCccccc----hhhhcCCCCCEEecCCcc
Q 048126 568 HLDLSGTAITHLP----IELQKLVNLKCLNLEYMY 598 (863)
Q Consensus 568 ~L~L~~~~l~~lp----~~~~~l~~L~~L~l~~~~ 598 (863)
.|++.+|..+.+- ..+.-+++|..|+-..+.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 9999999776552 246677889998876653
No 288
>PRK06547 hypothetical protein; Provisional
Probab=95.91 E-value=0.011 Score=56.66 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 136 DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 136 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.+...+......+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334445556678899999999999999999999875
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.89 E-value=0.049 Score=55.55 Aligned_cols=88 Identities=11% Similarity=0.146 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---------------
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW--------------- 210 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--------------- 210 (863)
.-+++.|+|.+|+|||++|.++..... + .=..++|++..+. ...+.+++ .+++......
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL--K-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH--h-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 567999999999999999999966541 2 2346889888654 44555543 3343321100
Q ss_pred ---cCCChhHHHHHHHHHhcc-CcEEEEEeccC
Q 048126 211 ---KNGSLEDKASDILRILSK-KKFLLLLDDIW 239 (863)
Q Consensus 211 ---~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 239 (863)
.....++....+.+.++. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 011234555666666654 55578888875
No 290
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.018 Score=64.82 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=48.8
Q ss_pred CCccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
++.+|.++.+++|++++.- -+-++++.+|++|||||.+|+.++.-. ...| +-++|+.-.|..+|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhh
Confidence 4568999999999999852 256799999999999999999999987 2333 22455655555554
No 291
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.80 E-value=0.012 Score=61.83 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+..++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999997
No 292
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.80 E-value=0.021 Score=67.63 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=37.3
Q ss_pred CCccchhHHHHHHHHHhcC--------C-CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE--------E-QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+||-+..++.|.+.+.. . ....+.++|+.|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999998888752 1 23578899999999999999998876
No 293
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.79 E-value=0.096 Score=61.65 Aligned_cols=150 Identities=14% Similarity=0.116 Sum_probs=80.0
Q ss_pred ccchhHHHHHHHHHh---cC---------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 128 TVGLESMFDKVWRCL---GE---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
+.|.+..++++.+.+ .. .-.+-|.++|++|+|||++|+.+++.. ...| +.++.+. +
T Consensus 154 i~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------~ 221 (644)
T PRK10733 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------F 221 (644)
T ss_pred HcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------h
Confidence 457666555554433 22 113458899999999999999999876 2233 2222221 1
Q ss_pred HHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc----------------cccccCCCCC--CCCC
Q 048126 196 QEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD----------------LTKVGVPFPD--PENK 257 (863)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~~~l~~--~~~g 257 (863)
.. .. ...........+...-...+.+|++|+++.... ...+...+.. ...+
T Consensus 222 ~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 222 VE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred HH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 11 00 011112222333333345678999999865310 0111111111 1234
Q ss_pred cEEEEecCchhhhhc--c---cccceEeecCCChHHHHHHHHHHhccc
Q 048126 258 SKIVFTTRFLEICGA--M---KAHEFLKVECLGPEDAWRLFRENLRRD 300 (863)
Q Consensus 258 s~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~ 300 (863)
.-+|.||...+.... . .-+..+.++.-+.++-.++++......
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 455557776554221 1 224567788888888888888776543
No 294
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.78 E-value=0.19 Score=52.81 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=57.9
Q ss_pred HHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---
Q 048126 137 KVWRCLGEE---QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW--- 210 (863)
Q Consensus 137 ~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--- 210 (863)
.|-..|..+ .-+++-|+|+.|+||||||..+.... ...-..++||.....++.. .++++++..+..
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~ 111 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVV 111 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEe
Confidence 344445433 45799999999999999999998876 2234578999987766553 344555543321
Q ss_pred cCCChhHHHHHHHHHhcc-CcEEEEEeccCCc
Q 048126 211 KNGSLEDKASDILRILSK-KKFLLLLDDIWER 241 (863)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~ 241 (863)
.....++..+...+.++. .--++|+|.|-..
T Consensus 112 ~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 112 QPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp E-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred cCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 233445555555565654 3458899998654
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.77 E-value=0.066 Score=57.32 Aligned_cols=58 Identities=19% Similarity=0.422 Sum_probs=42.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCC----CCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPND----FDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 205 (863)
...++-|+|.+|+|||+++.+++... ..... =..++||+....++...+.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 46789999999999999999998765 11111 14789999988888777654 4455543
No 296
>PHA00729 NTP-binding motif containing protein
Probab=95.76 E-value=0.013 Score=58.01 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=28.8
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 137 KVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 137 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555555666789999999999999999999875
No 297
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.75 E-value=0.05 Score=57.79 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=41.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCC----CCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAP----NDFDVVIWVVVSKDLQLEKIQEKIGRRIGFL 206 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 206 (863)
.-.++.|+|.+|+|||+|+..++... ... ..-..++||+....++..++ .++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 46799999999999999999987643 111 11236799998887777764 4456666543
No 298
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.0018 Score=64.14 Aligned_cols=95 Identities=25% Similarity=0.250 Sum_probs=41.5
Q ss_pred eEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCC--ccccccCCCCeEEccC
Q 048126 496 VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP--SGISTLVSLEHLDLSG 573 (863)
Q Consensus 496 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~L~~ 573 (863)
++.|++.++.+..+.-..+++.|++|.|+-|.++.+.+ |..|++|+.|.|..| .+..+- ..+.++++|++|-|..
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhcc
Confidence 33444444444444334444445555555444444433 444555555555444 222221 1234445555555544
Q ss_pred CCcc-ccc-----hhhhcCCCCCEEe
Q 048126 574 TAIT-HLP-----IELQKLVNLKCLN 593 (863)
Q Consensus 574 ~~l~-~lp-----~~~~~l~~L~~L~ 593 (863)
|... .-+ ..+.-|+||+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 4222 111 1244556666664
No 299
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.029 Score=57.16 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=50.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCC--CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGA--PNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
-++|.++|++|.|||+|.+++++.. .+ .+.|.....+.++ -..++..-..+ ...-...+.+++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEin----shsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEIN----SHSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEe----hhHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4789999999999999999999987 33 2334433344332 22233222211 23345566677777
Q ss_pred HhccCc--EEEEEeccCC
Q 048126 225 ILSKKK--FLLLLDDIWE 240 (863)
Q Consensus 225 ~l~~kr--~LlVlDdv~~ 240 (863)
.++++. +++.+|.|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 777755 3455688853
No 300
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.13 Score=57.20 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=85.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
...-|.+||++|+|||-||++|+|.. +-.| ++|-.+ +++..- ...++..+...+++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHh
Confidence 35678899999999999999999987 4454 444332 222111 223333444444444
Q ss_pred hccCcEEEEEeccCCc-------ccc------ccccCCCCC--CCCCcEEEEecCchhhh-hc-c---cccceEeecCCC
Q 048126 226 LSKKKFLLLLDDIWER-------VDL------TKVGVPFPD--PENKSKIVFTTRFLEIC-GA-M---KAHEFLKVECLG 285 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~-------~~~------~~~~~~l~~--~~~gs~IivTtR~~~v~-~~-~---~~~~~~~l~~L~ 285 (863)
=..-++.|.||.++.. ..| .++..-+.. ...|.-||-.|-.+++. .. . .-+...-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 4567999999998642 111 122222221 22455566555554442 11 1 124456677778
Q ss_pred hHHHHHHHHHHhccc--ccCCCCChHHHHHHHHHHhCCc
Q 048126 286 PEDAWRLFRENLRRD--VLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 286 ~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~gl 322 (863)
.+|=.++++...... ....+-++.++|+. .+|.|.
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 888888888887632 22333455555543 345554
No 301
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.65 E-value=0.014 Score=57.63 Aligned_cols=107 Identities=12% Similarity=0.126 Sum_probs=59.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHH---HHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQE---KIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
.+|.|+|+.|.||||++..+.... .......+++- .++.. .... .+..+-. ...+.....+.++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E--~~~~~~~~~i~q~~------vg~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIE--FVHESKRSLINQRE------VGLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCcc--ccccCccceeeecc------cCCCccCHHHHHHH
Confidence 478999999999999999988776 22333343332 22211 1000 0111100 11122345566777
Q ss_pred HhccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhh
Q 048126 225 ILSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEI 269 (863)
Q Consensus 225 ~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v 269 (863)
.+...+=.+++|++.+.......... ...|..++.|+-...+
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 78777889999999776544432222 1235556666665443
No 302
>PRK04328 hypothetical protein; Provisional
Probab=95.64 E-value=0.052 Score=55.76 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=31.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD 189 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 189 (863)
.-+++.|.|.+|+|||+||.++.... ...-..++||+....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 46799999999999999999987664 122356788887664
No 303
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.081 Score=56.16 Aligned_cols=96 Identities=25% Similarity=0.373 Sum_probs=60.4
Q ss_pred HHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc--
Q 048126 135 FDKVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW-- 210 (863)
Q Consensus 135 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 210 (863)
+.++-+.|..+ .-.+|.|-|-+|||||||.-+++.+.. ..- .++||+--+. ..+ .+--++.++...+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEE
Confidence 45555556543 346899999999999999999999983 222 6888865443 222 233456676544321
Q ss_pred -cCCChhHHHHHHHHHhccCcEEEEEeccCC
Q 048126 211 -KNGSLEDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 211 -~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
...+.++....+. +.++-++|+|-+..
T Consensus 152 ~aEt~~e~I~~~l~---~~~p~lvVIDSIQT 179 (456)
T COG1066 152 LAETNLEDIIAELE---QEKPDLVVIDSIQT 179 (456)
T ss_pred ehhcCHHHHHHHHH---hcCCCEEEEeccce
Confidence 1223333333333 36888999999854
No 304
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.58 E-value=0.01 Score=54.05 Aligned_cols=22 Identities=41% Similarity=0.794 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048126 150 IGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (863)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 305
>PRK14974 cell division protein FtsY; Provisional
Probab=95.56 E-value=0.1 Score=55.64 Aligned_cols=91 Identities=21% Similarity=0.198 Sum_probs=50.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCCcc-ccCCChhHHH-HH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL--QLEKIQEKIGRRIGFLDES-WKNGSLEDKA-SD 221 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 221 (863)
+..+|.++|+.|+||||++..++.... ...+ .++.+.. +.+ .....++..+..++.+... ....+....+ ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 467999999999999999999887762 2334 3334432 222 2334456667777654321 1112222222 22
Q ss_pred HHHHhccCcEEEEEeccCC
Q 048126 222 ILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 222 l~~~l~~kr~LlVlDdv~~ 240 (863)
+...-....=++++|-+..
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 2222222223888898754
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.56 E-value=0.067 Score=55.53 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=50.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH--HHHHHHHHHHhCCCCcc-ccCCChhH-HHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL--EKIQEKIGRRIGFLDES-WKNGSLED-KASD 221 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~-~~~~ 221 (863)
+.++|.++|++|+||||++..++.... +.. ..+++++... +.. .+-+...++..+...-. ....+... ....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g-~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK--KQG-KSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcC-CEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 467999999999999999999988772 222 3456665432 222 23344455555533210 01112222 2233
Q ss_pred HHHHhccCcEEEEEeccC
Q 048126 222 ILRILSKKKFLLLLDDIW 239 (863)
Q Consensus 222 l~~~l~~kr~LlVlDdv~ 239 (863)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444333445578888764
No 307
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.56 E-value=0.066 Score=52.78 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=44.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC---EEEEEEeCCccCHHHHHHHHHHHh--CCCCccccCCChhHHHHHHH
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFD---VVIWVVVSKDLQLEKIQEKIGRRI--GFLDESWKNGSLEDKASDIL 223 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 223 (863)
||+|.|.+|+||||+|+.+..... +.... ....+.............. -... ..........+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999882 22333 2333333322222222221 1111 11111123445666777777
Q ss_pred HHhccCcEEE
Q 048126 224 RILSKKKFLL 233 (863)
Q Consensus 224 ~~l~~kr~Ll 233 (863)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666444
No 308
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.53 E-value=0.098 Score=53.17 Aligned_cols=53 Identities=28% Similarity=0.345 Sum_probs=35.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++.... ...+.+. +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHHH-HHHhC
Confidence 457999999999999999999876541 12346788876443 3444333 44444
No 309
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.23 Score=49.04 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=40.6
Q ss_pred ccccCCCCC---ccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 119 AVDQRPCEP---TVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 119 ~~~~~~~~~---~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++++|++. +=|.+..++++++.+.- ..++-+..+|++|.|||-+|++.+..-
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 455666543 45889999999998731 135678899999999999999998765
No 310
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.50 E-value=0.043 Score=60.52 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=37.8
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 35899999999999888654 356799999999999999999876
No 311
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.49 E-value=0.0056 Score=36.08 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=11.5
Q ss_pred CCCeEEccCCCccccchhhhc
Q 048126 565 SLEHLDLSGTAITHLPIELQK 585 (863)
Q Consensus 565 ~L~~L~L~~~~l~~lp~~~~~ 585 (863)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355566666655555555443
No 312
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.49 E-value=0.056 Score=52.48 Aligned_cols=127 Identities=20% Similarity=0.200 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc------------ccCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES------------WKNG 213 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 213 (863)
.-.+++|+|..|.|||||++.++.-. .. ....+++.-. ++......+...++...+. ...-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL-KP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC-CC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 34689999999999999999998775 21 1223333211 1111111111111111100 0011
Q ss_pred C-hhHHHHHHHHHhccCcEEEEEeccCCcccc---ccccCCCCCCCCCcEEEEecCchhhhhcccccceEee
Q 048126 214 S-LEDKASDILRILSKKKFLLLLDDIWERVDL---TKVGVPFPDPENKSKIVFTTRFLEICGAMKAHEFLKV 281 (863)
Q Consensus 214 ~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 281 (863)
+ -+...-.+...+-.++=++++|+....-|. ..+...+.....+..||++|.+...... .++.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 122223345566677889999998654321 1111111111135668888888766542 3445444
No 313
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.47 E-value=0.11 Score=55.70 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=43.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCC----CCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAP----NDFDVVIWVVVSKDLQLEKIQEKIGRRIGFL 206 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 206 (863)
.-.++-|+|.+|+|||+++..++-.. ... ..-..++||+....+..+++. ++++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 45788899999999999999887543 111 112378999999988887764 566776654
No 314
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.46 E-value=0.12 Score=55.34 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=43.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcC---CCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLG---APNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFL 206 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 206 (863)
.-+++-|+|.+|+|||+|+.+++-.... ....-..++||+....|+.+++.+ ++++++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4578889999999999999998644311 011124789999999888888754 56667654
No 315
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.11 Score=56.45 Aligned_cols=91 Identities=22% Similarity=0.214 Sum_probs=54.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCC-CCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCccccCCChhHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAP-NDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLDESWKNGSLEDKASDIL 223 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (863)
..++|.++|+.|+||||.+..++....... .+-..+..|++... ......++..++.++.+.. ......++...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999988762111 12234555655432 1233346666776766432 2233344444444
Q ss_pred HHhccCcEEEEEeccCC
Q 048126 224 RILSKKKFLLLLDDIWE 240 (863)
Q Consensus 224 ~~l~~kr~LlVlDdv~~ 240 (863)
+. .+.-++++|.+..
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 33 3456888898743
No 316
>PRK07667 uridine kinase; Provisional
Probab=95.45 E-value=0.019 Score=56.54 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=29.7
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 135 FDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 135 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+.|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666643 355799999999999999999999887
No 317
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.45 E-value=0.053 Score=49.28 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=44.8
Q ss_pred ccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEE
Q 048126 493 WRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570 (863)
Q Consensus 493 ~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 570 (863)
+++++.+.+.. .+..+. .+..+++|+.+.+..+ +..++...|.+++.|+.+.+.++ ....-...+..+.+|+.++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-ccccccccccccccccccc
Confidence 34555555552 333332 2355666666666553 55666666666666666666543 2211222344566666666
Q ss_pred ccCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCC
Q 048126 571 LSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKL 614 (863)
Q Consensus 571 L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L 614 (863)
+..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 6543 4444332 4444 666666554 3345555445555444
No 318
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.43 E-value=0.077 Score=52.70 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=57.2
Q ss_pred HHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCC-----cccc
Q 048126 139 WRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLD-----ESWK 211 (863)
Q Consensus 139 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~ 211 (863)
++.+.. .+-..++|.|..|+|||+|+..+.+.. .-+.++++.+++.. .+.++.+.+...-.... .. .
T Consensus 6 ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t-~ 79 (215)
T PF00006_consen 6 IDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAAT-S 79 (215)
T ss_dssp HHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEE-T
T ss_pred eccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhccccccccccccc-c
Confidence 444433 233578999999999999999999986 23455888888664 45666666643311110 00 1
Q ss_pred CCChhH------HHHHHHHHh--ccCcEEEEEeccCC
Q 048126 212 NGSLED------KASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 212 ~~~~~~------~~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
..+... ..-.+.+++ +++.+|+++||+..
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 111111 111222333 58999999999844
No 319
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.43 E-value=0.041 Score=60.06 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCccc----cCCChh----
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFLDESW----KNGSLE---- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~----~~~~~~---- 216 (863)
.-..++|+|..|+|||||++.++... ..+.++++-+++... +.++.+.++..-+....-. .+.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 44689999999999999999998654 225666677776543 4455555544322111000 111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEeccCCc
Q 048126 217 --DKASDILRIL--SKKKFLLLLDDIWER 241 (863)
Q Consensus 217 --~~~~~l~~~l--~~kr~LlVlDdv~~~ 241 (863)
..+-.+.+++ +++.+|+++||+...
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1122234444 579999999998653
No 320
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.40 E-value=0.49 Score=50.22 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=35.0
Q ss_pred eEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHH
Q 048126 278 FLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLAL 326 (863)
Q Consensus 278 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 326 (863)
++++++++.+|+..++.-............-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999987765442222344456666666679998643
No 321
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.37 E-value=0.11 Score=55.63 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=42.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCC----CCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPN----DFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 205 (863)
.-.++-|+|.+|+|||+++.+++... .... .=..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 45788999999999999999998775 2110 11378999998888877654 44555544
No 322
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.092 Score=56.07 Aligned_cols=90 Identities=20% Similarity=0.166 Sum_probs=55.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
+.++++++|+.|+||||++..++.... . .. ..+.+|+.... ......++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~-~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-K-QN-RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-cC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 467999999999999999999987762 1 22 34666765432 2234556666666665432 23345555554443
Q ss_pred Hhc-cCcEEEEEeccCC
Q 048126 225 ILS-KKKFLLLLDDIWE 240 (863)
Q Consensus 225 ~l~-~kr~LlVlDdv~~ 240 (863)
.-. +..=+|++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 321 3445777887743
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.32 E-value=0.014 Score=46.29 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999884
No 324
>PTZ00301 uridine kinase; Provisional
Probab=95.32 E-value=0.02 Score=56.84 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998776
No 325
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.055 Score=58.74 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=34.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCC
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFL 206 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 206 (863)
..++.++|++|+||||++.+++... .....+ .+..++... .......++..++.++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~-~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp 281 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY-FLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMP 281 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCC
Confidence 4689999999999999999998754 112222 233333221 112234445555555553
No 326
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.24 E-value=0.07 Score=51.35 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=64.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCC--C---CCCC--EEEEEEeCCccCHHHHHHHHHHHhCCCCc---c-ccCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGA--P---NDFD--VVIWVVVSKDLQLEKIQEKIGRRIGFLDE---S-WKNGS 214 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~---~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~-~~~~~ 214 (863)
.-.+++|+|+.|+|||||.+.+..+.-++ . ..|. .+.|+ .+ .+.++.++.... . ...-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 44689999999999999999986431010 0 0111 12332 22 455666665321 0 01112
Q ss_pred hh-HHHHHHHHHhccC--cEEEEEeccCCcccc---ccccCCCCC-CCCCcEEEEecCchhhhhcccccceEee
Q 048126 215 LE-DKASDILRILSKK--KFLLLLDDIWERVDL---TKVGVPFPD-PENKSKIVFTTRFLEICGAMKAHEFLKV 281 (863)
Q Consensus 215 ~~-~~~~~l~~~l~~k--r~LlVlDdv~~~~~~---~~~~~~l~~-~~~gs~IivTtR~~~v~~~~~~~~~~~l 281 (863)
.. ...-.+...+-.+ +-++++|+.-..-+. ..+...+.. ...|..||++|.+...... .+.++.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 12 2223344555566 778889987553221 222111111 1246668888888766532 4455554
No 327
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.24 E-value=0.1 Score=49.86 Aligned_cols=125 Identities=13% Similarity=0.159 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCC--C---CEEEEEEeCCccCH--HHHHHHHHHHhCCCCccccCCChhHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPND--F---DVVIWVVVSKDLQL--EKIQEKIGRRIGFLDESWKNGSLEDK 218 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F---~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 218 (863)
.-.+++|+|..|.|||||++.+.......... + ..+.++ .+.... ..+.+.+.-. ... .-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 44689999999999999999998875211111 1 112232 333211 1233332210 110 12222333
Q ss_pred HHHHHHHhccCcEEEEEeccCCcccc---ccccCCCCCCCCCcEEEEecCchhhhhcccccceEee
Q 048126 219 ASDILRILSKKKFLLLLDDIWERVDL---TKVGVPFPDPENKSKIVFTTRFLEICGAMKAHEFLKV 281 (863)
Q Consensus 219 ~~~l~~~l~~kr~LlVlDdv~~~~~~---~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 281 (863)
.-.+.+.+-.++=++++|+--..-|. ..+...+... +..||++|.+..... ..++++.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 34455666677788899987543221 1221112111 355778887766543 24445544
No 328
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.0031 Score=59.80 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=31.0
Q ss_pred hhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCC--CchhhccCCCcEEEEecccc
Q 048126 687 LACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKD--LTWLVFAPSLKSIVVLSCCN 759 (863)
Q Consensus 687 l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~l~~~~~ 759 (863)
+..++.|+.|.+.+|..+.+...+.++ ...++|+.|+|++|+++++ +.++..+++|+.|.|.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 333445555555555544433333322 1345555555555555544 23444555555555555443
No 329
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.4 Score=47.07 Aligned_cols=146 Identities=16% Similarity=0.253 Sum_probs=80.4
Q ss_pred cc-chhHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 128 TV-GLESMFDKVWRCLG-------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 128 ~v-Gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
+| |.+..+.+|.+.+. -.+++-+.++|++|.|||-||++||+.- .+-|+-||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---H
Confidence 45 45666776666553 1356778899999999999999999765 3456666653 1
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHh-ccCcEEEEEeccCCcc----------c------cccccCCCC--CC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRIL-SKKKFLLLLDDIWERV----------D------LTKVGVPFP--DP 254 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~------~~~~~~~l~--~~ 254 (863)
-+++-|.+ . ......+.-.- ..-+.+|..|.++... + -.++...+. ..
T Consensus 217 lvqk~ige-----g--------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 217 LVQKYIGE-----G--------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHhhh-----h--------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 12221110 0 01111111111 2356788888876421 0 001111222 12
Q ss_pred CCCcEEEEecCchhhh-----hcccccceEeecCCChHHHHHHHHHHh
Q 048126 255 ENKSKIVFTTRFLEIC-----GAMKAHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 255 ~~gs~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
.+.-+||++|..-++. +--..+..++.++-+++.-.++++-+.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 3567888877655542 212234567777777776667776544
No 330
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.18 E-value=0.092 Score=52.99 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=71.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-----ccCHHHHHHHHHHHhCCCCcccc----CCChh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-----DLQLEKIQEKIGRRIGFLDESWK----NGSLE 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~~----~~~~~ 216 (863)
+-.++++||-.|.||||+++.+..=. ..-...+++.-.+ .....+...++++.++...+... .-+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45799999999999999999998765 2223334433211 12233456666777765432110 11222
Q ss_pred HH-HHHHHHHhccCcEEEEEeccCCcccc---ccccCCCC--CCCCCcEEEEecCchhhhhccc
Q 048126 217 DK-ASDILRILSKKKFLLLLDDIWERVDL---TKVGVPFP--DPENKSKIVFTTRFLEICGAMK 274 (863)
Q Consensus 217 ~~-~~~l~~~l~~kr~LlVlDdv~~~~~~---~~~~~~l~--~~~~gs~IivTtR~~~v~~~~~ 274 (863)
++ .-.+.+.+.-++-++|.|..-...+. .++...+. ....|-..+..|-+-.++..+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 22 23466788889999999986443221 11111111 1223556788888877766554
No 331
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.16 E-value=0.097 Score=54.52 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876655
No 332
>PRK08233 hypothetical protein; Provisional
Probab=95.16 E-value=0.017 Score=56.27 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999876
No 333
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.14 E-value=0.026 Score=57.34 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++..+|+|.|+.|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999887
No 334
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.13 E-value=0.083 Score=54.02 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=59.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcC--CCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCc-----cccCCChh-
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLG--APNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLDE-----SWKNGSLE- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~- 216 (863)
+-..++|.|-.|+|||+|+..+.+.. . .+.+-+.++++-+++.. +..++.+.+.+.-..... +.+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 34578999999999999999998876 2 12335788999988765 356666666553221110 00111111
Q ss_pred ----HHHHHHHHHhc---cCcEEEEEeccCCc
Q 048126 217 ----DKASDILRILS---KKKFLLLLDDIWER 241 (863)
Q Consensus 217 ----~~~~~l~~~l~---~kr~LlVlDdv~~~ 241 (863)
..+-.+.++++ ++++|+++||+...
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 12233445553 68999999998654
No 335
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.033 Score=53.62 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 336
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.013 Score=55.60 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999999887
No 337
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.11 E-value=0.096 Score=51.58 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC-------CEEEEEEeCCc
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF-------DVVIWVVVSKD 189 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-------~~~~wv~~s~~ 189 (863)
-.++.|+|++|+||||++..++.....-...| ..++|+....+
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 35889999999999999999988873211111 36788876665
No 338
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.11 E-value=0.084 Score=59.07 Aligned_cols=95 Identities=24% Similarity=0.358 Sum_probs=54.5
Q ss_pred HHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---
Q 048126 136 DKVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW--- 210 (863)
Q Consensus 136 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--- 210 (863)
.++-+.|..+ .-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... ++.++...+..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~ 140 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLL 140 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEe
Confidence 4444555432 356899999999999999999988772 22235788876543 3333222 45555432111
Q ss_pred cCCChhHHHHHHHHHhccCcEEEEEeccC
Q 048126 211 KNGSLEDKASDILRILSKKKFLLLLDDIW 239 (863)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 239 (863)
...+.+++...+. +.+.-++|+|.+.
T Consensus 141 ~e~~l~~i~~~i~---~~~~~lVVIDSIq 166 (446)
T PRK11823 141 AETNLEAILATIE---EEKPDLVVIDSIQ 166 (446)
T ss_pred CCCCHHHHHHHHH---hhCCCEEEEechh
Confidence 1122333333322 2355678888874
No 339
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.29 Score=56.11 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=85.3
Q ss_pred ccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHH
Q 048126 128 TVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEK 194 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 194 (863)
+.|.+..++.+.+.+.- ...+.+-++|++|.|||.||+++++.. ...|-.+ ... .
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v-----~~~----~ 311 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISV-----KGS----E 311 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEe-----eCH----H
Confidence 35666666665555421 245688899999999999999999966 3344222 111 1
Q ss_pred HHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcccc-------------ccccCCCC--CCCCCcE
Q 048126 195 IQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVDL-------------TKVGVPFP--DPENKSK 259 (863)
Q Consensus 195 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-------------~~~~~~l~--~~~~gs~ 259 (863)
+... +...+.......+....+..+..|.+|+++....+ .++...+. ....+..
T Consensus 312 l~sk-----------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 312 LLSK-----------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred Hhcc-----------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 1100 11223333444444555678999999998653211 11222222 1223333
Q ss_pred EEEecCchhhhh---cc--cccceEeecCCChHHHHHHHHHHhccc
Q 048126 260 IVFTTRFLEICG---AM--KAHEFLKVECLGPEDAWRLFRENLRRD 300 (863)
Q Consensus 260 IivTtR~~~v~~---~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~ 300 (863)
||-||-...... .. .-+..+.++.-+.++..+.|+.+....
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 444444433321 11 234578889999999999999887643
No 340
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.07 E-value=0.11 Score=53.54 Aligned_cols=128 Identities=16% Similarity=0.064 Sum_probs=67.8
Q ss_pred HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---
Q 048126 135 FDKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW--- 210 (863)
Q Consensus 135 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--- 210 (863)
.+.++..+.. .+..-++|+|+.|.|||||.+.++.... .....+++.- ++....+-..+++.......+..
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECC-EEeecchhHHHHHHHhcccccccccc
Confidence 4444444443 4457899999999999999999998761 2223333321 11111011123332222111100
Q ss_pred --cCCChhHHHHHHHHHhc-cCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhh
Q 048126 211 --KNGSLEDKASDILRILS-KKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEIC 270 (863)
Q Consensus 211 --~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~ 270 (863)
+..+....+..+...+. ..+=++|+|.+.....+..+...+. .|..||+||-+..+.
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 00011111223444443 4788999999977665555543332 477799999876553
No 341
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.07 E-value=0.045 Score=55.42 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=35.2
Q ss_pred ccchhHHHHHHHHHhcC-------CCccEEEEEcCCCCcHHHHHHHHHhhhc
Q 048126 128 TVGLESMFDKVWRCLGE-------EQVGIIGLYGMGGVGKTTLLTKINNKLL 172 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 172 (863)
++|-.-.++.|+..+.+ .++-+++.+|..|+||.-+++.+++...
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 46766666666666642 3566999999999999999999998873
No 342
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.05 E-value=0.021 Score=57.06 Aligned_cols=27 Identities=41% Similarity=0.573 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 343
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.05 E-value=0.02 Score=53.23 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999999876
No 344
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.04 E-value=0.091 Score=54.10 Aligned_cols=89 Identities=21% Similarity=0.224 Sum_probs=56.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH-hCCCCccccCCChhH---HHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR-IGFLDESWKNGSLED---KASD 221 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~---~~~~ 221 (863)
.-+++=|+|+.|.||||+|.+++-.. +..-..++||+.-..+++..+.. ++.. +..-.- ....+.++ .+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v-~~~~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLV-SQPDTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeE-ecCCCHHHHHHHHHH
Confidence 55789999999999999999988776 33444889999988888776543 3333 211100 01222232 3334
Q ss_pred HHHHhccCcEEEEEeccC
Q 048126 222 ILRILSKKKFLLLLDDIW 239 (863)
Q Consensus 222 l~~~l~~kr~LlVlDdv~ 239 (863)
+......+--|+|+|.|-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 444444445689999884
No 345
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.02 E-value=0.94 Score=47.59 Aligned_cols=167 Identities=11% Similarity=0.068 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcC-------CCCCCCEEEEEEe-CCccCHHHHHHHHHHHhCC
Q 048126 135 FDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLG-------APNDFDVVIWVVV-SKDLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 135 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 205 (863)
++.+.+.+..++. ++.-++|..|.||+++|..+.+..-. ...+-+...++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 4455666665555 45668999999999999999887511 0111112233321 1222333332 33333322
Q ss_pred CCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCc-hhhhhc-ccccceEee
Q 048126 206 LDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRF-LEICGA-MKAHEFLKV 281 (863)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~~~~~l 281 (863)
.. .-.+.+=++|+|++.... ....+...+.....++.+|++|.+ ..+... ......+++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 11 011466788889986542 233444444444556777765544 333322 233457899
Q ss_pred cCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 282 ECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 282 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
.++++++..+.+... + . + ++.+..++...+|.--|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~-~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-N-K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-C-C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 999999998877653 1 1 1 23466666677763344444
No 346
>PTZ00035 Rad51 protein; Provisional
Probab=95.02 E-value=0.24 Score=53.14 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=45.1
Q ss_pred HHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCC----CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 048126 137 KVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGA----PNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFL 206 (863)
Q Consensus 137 ~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 206 (863)
.+-++|.. ..-.++.|+|..|+|||+|+..++-.. .. ...=..++||+....++.+++ .+++++++..
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 34444543 245789999999999999999987654 21 112235779998777777664 4456665543
No 347
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.01 E-value=0.035 Score=56.36 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc-------------cc-
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES-------------WK- 211 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------------~~- 211 (863)
.-+++.|.|.+|+|||++|.++..... ++.=+.++||+...+. ..+.+.+. .++..... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 567999999999999999999765541 1102357888876553 44444432 33321100 00
Q ss_pred ----CCChhHHHHHHHHHhcc-CcEEEEEeccC
Q 048126 212 ----NGSLEDKASDILRILSK-KKFLLLLDDIW 239 (863)
Q Consensus 212 ----~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 239 (863)
..+.+.+...+.+.++. +...+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 23556666677666654 45788888763
No 348
>PRK06762 hypothetical protein; Provisional
Probab=94.96 E-value=0.022 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 349
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.96 E-value=1 Score=47.51 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=39.7
Q ss_pred ccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 128 TVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
++=..+....+...+..+ +.|.|.|.+|+||||+|+.++... ... .+-|.++...+..++
T Consensus 47 y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhc
Confidence 443444556677776543 468899999999999999999987 222 235555555444433
No 350
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.95 E-value=0.028 Score=52.31 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEE
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVV 185 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 185 (863)
.+|.|.|.+|+||||||+.+..... ..-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 5899999999999999999999982 2334455554
No 351
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.11 Score=51.26 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 129 VGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 129 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
=|-.+.++++.+...- +..+-|.++|++|.|||-+|++|+|+-
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 3677778887776531 346678899999999999999999986
No 352
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.93 E-value=0.018 Score=50.42 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048126 150 IGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (863)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998877
No 353
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.022 Score=54.87 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|-||-|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999998
No 354
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.90 E-value=0.22 Score=53.35 Aligned_cols=89 Identities=24% Similarity=0.198 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
.-++|++||+.||||||-..+++.++ .....=..+..|+...- ....+.++..++-++++.. ...+..++...+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 37899999999999998777766666 21233345677765432 2445666777777777653 23344555544443
Q ss_pred HhccCcEEEEEeccC
Q 048126 225 ILSKKKFLLLLDDIW 239 (863)
Q Consensus 225 ~l~~kr~LlVlDdv~ 239 (863)
+++.. +|.+|-+.
T Consensus 279 -l~~~d-~ILVDTaG 291 (407)
T COG1419 279 -LRDCD-VILVDTAG 291 (407)
T ss_pred -hhcCC-EEEEeCCC
Confidence 33343 44446553
No 355
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.89 E-value=0.042 Score=48.69 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=33.3
Q ss_pred CccchhHHHHHHHHHhc----C---CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLG----E---EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|-+-..+.|++.+. . ++.-|++.+|+.|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35666655555555553 2 356699999999999999999998874
No 356
>PRK03839 putative kinase; Provisional
Probab=94.88 E-value=0.022 Score=55.42 Aligned_cols=23 Identities=48% Similarity=0.680 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 357
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.084 Score=50.81 Aligned_cols=126 Identities=18% Similarity=0.210 Sum_probs=62.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC--ccCHHHHHHHHHHHhCCCCcc--ccC-------CC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK--DLQLEKIQEKIGRRIGFLDES--WKN-------GS 214 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~--~~~-------~~ 214 (863)
.-.+++|+|..|.|||||.+.++.-. . .....+++.-.. ....... ...++...+. ... -+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~-~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY-D---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC-C---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 44699999999999999999998875 2 223333332110 0011111 1111111000 000 01
Q ss_pred -hhHHHHHHHHHhccCcEEEEEeccCCcccc---ccccCCCCCCCCCcEEEEecCchhhhhcccccceEee
Q 048126 215 -LEDKASDILRILSKKKFLLLLDDIWERVDL---TKVGVPFPDPENKSKIVFTTRFLEICGAMKAHEFLKV 281 (863)
Q Consensus 215 -~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 281 (863)
-+...-.+...+-.++-++++|+-...-|. ..+...+.....+..||++|.+...... +++.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 111222345556667889999997654321 1221111111124668888888766543 4445444
No 358
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.85 E-value=0.093 Score=58.18 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=50.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
.+++.++|++|+||||++..++... .....-..+..|+....- .....++...+.++.+.. ...+..++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3699999999999999999988776 201222356667653321 122334444555555432 22233444444443
Q ss_pred hccCcEEEEEeccC
Q 048126 226 LSKKKFLLLLDDIW 239 (863)
Q Consensus 226 l~~kr~LlVlDdv~ 239 (863)
+. ..=+||+|..-
T Consensus 297 ~~-~~DlVlIDt~G 309 (424)
T PRK05703 297 LR-DCDVILIDTAG 309 (424)
T ss_pred hC-CCCEEEEeCCC
Confidence 23 34578888763
No 359
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.84 E-value=0.024 Score=55.56 Aligned_cols=26 Identities=38% Similarity=0.374 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999765
No 360
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.83 E-value=0.099 Score=49.57 Aligned_cols=118 Identities=20% Similarity=0.193 Sum_probs=63.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEE--EEEeCCccCHHHHHHHHHHH---hCCCCccccCCChh-----
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVI--WVVVSKDLQLEKIQEKIGRR---IGFLDESWKNGSLE----- 216 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~--wv~~s~~~~~~~~~~~i~~~---l~~~~~~~~~~~~~----- 216 (863)
...|-|++..|.||||.|.-++-+.. ...+.+.+ |+.-.....-...++.+.-. .+... .+...+.+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~-~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGF-TWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCC-eecCCCcHHHHHH
Confidence 46888999999999999999988872 33444322 33333233444444433000 01100 01111111
Q ss_pred --HHHHHHHHHhccCc-EEEEEeccCCc-----cccccccCCCCCCCCCcEEEEecCch
Q 048126 217 --DKASDILRILSKKK-FLLLLDDIWER-----VDLTKVGVPFPDPENKSKIVFTTRFL 267 (863)
Q Consensus 217 --~~~~~l~~~l~~kr-~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~ 267 (863)
+.....++.+...+ =++|||.+-.. .+.+++...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12223344444444 59999998532 22334444444445567899999985
No 361
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.83 E-value=0.13 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 362
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.82 E-value=0.091 Score=58.20 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=59.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCccc----cCCChh----
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLDESW----KNGSLE---- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~---- 216 (863)
+-..++|.|..|+|||||+.+++.... +.+-+.++++-+++.. .+.++...+...-....... ...+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 446899999999999999999988872 2356788888887654 35566666654322111000 111111
Q ss_pred --HHHHHHHHHh---ccCcEEEEEeccCC
Q 048126 217 --DKASDILRIL---SKKKFLLLLDDIWE 240 (863)
Q Consensus 217 --~~~~~l~~~l---~~kr~LlVlDdv~~ 240 (863)
..+-.+.+++ +++.+|+++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1233445555 37899999999954
No 363
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.81 E-value=0.024 Score=56.53 Aligned_cols=26 Identities=46% Similarity=0.560 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|+.|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 364
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.80 E-value=0.15 Score=57.21 Aligned_cols=97 Identities=25% Similarity=0.342 Sum_probs=53.9
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc--
Q 048126 135 FDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW-- 210 (863)
Q Consensus 135 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 210 (863)
+.++-+.|.. ..-.++.|.|.+|+|||||+.+++.... +. -..++||+.... ..++.. -+..++...+..
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~-g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~ 153 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA--KN-QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYV 153 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hc-CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEE
Confidence 4455555543 2457999999999999999999987762 11 135788875443 333322 233444332211
Q ss_pred -cCCChhHHHHHHHHHhccCcEEEEEeccCC
Q 048126 211 -KNGSLEDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 211 -~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
...+.+++...+. +.+.-++|+|.+..
T Consensus 154 ~~e~~~~~I~~~i~---~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 154 LSETNWEQICANIE---EENPQACVIDSIQT 181 (454)
T ss_pred cCCCCHHHHHHHHH---hcCCcEEEEecchh
Confidence 1122333322222 12455788888743
No 365
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.80 E-value=0.09 Score=51.12 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=64.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEE---eCCccCHHHH------HHHHHHHhCCCCcc---cc-C
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVV---VSKDLQLEKI------QEKIGRRIGFLDES---WK-N 212 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~s~~~~~~~~------~~~i~~~l~~~~~~---~~-~ 212 (863)
.-.+++|+|..|.|||||++.++... ......+++. +.. .+.... ..++++.+++.... .. -
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 44699999999999999999998765 1233344432 221 122111 12245555543210 01 1
Q ss_pred CChhHHHHHHHHHhccCcEEEEEeccCCccc---cccccCCCCC-CCC-CcEEEEecCchhhh
Q 048126 213 GSLEDKASDILRILSKKKFLLLLDDIWERVD---LTKVGVPFPD-PEN-KSKIVFTTRFLEIC 270 (863)
Q Consensus 213 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~~~l~~-~~~-gs~IivTtR~~~v~ 270 (863)
..-+...-.+...+-..+-++++|+.-..-| ...+...+.. ... |.-||++|.+....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1122233345566777888999999765432 2222222211 112 56788888876553
No 366
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.80 E-value=0.052 Score=60.50 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=54.3
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEE-EEEEeCCccC-HHHHHHHHHHHhCCCCccccCCC
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVV-IWVVVSKDLQ-LEKIQEKIGRRIGFLDESWKNGS 214 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~ 214 (863)
+++++.. ..-....|+|.+|+|||||++.+++... ..+-++. +++-|.+... +.++.+.+-.++-.. .++...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVas--T~D~p~ 481 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAS--TFDRPP 481 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEE--CCCCCH
Confidence 4444443 3345788999999999999999999762 2333433 3445555443 334444331111000 111111
Q ss_pred -----hhHHHHHHHHHh--ccCcEEEEEeccCC
Q 048126 215 -----LEDKASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 215 -----~~~~~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
....+-.+.+++ .++.+||++|++..
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 112222333444 57899999999854
No 367
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.80 E-value=0.048 Score=52.03 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=61.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC--ccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK--DLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDIL 223 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (863)
.-.+++|+|..|.|||||.+.++... ......+++.-.. ..+..+.. ...++... +-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE---ecCHHHHHHHHHH
Confidence 34689999999999999999998765 2334445543111 11111111 11111110 1122223333455
Q ss_pred HHhccCcEEEEEeccCCccc---cccccCCCCC-CCCCcEEEEecCchhhh
Q 048126 224 RILSKKKFLLLLDDIWERVD---LTKVGVPFPD-PENKSKIVFTTRFLEIC 270 (863)
Q Consensus 224 ~~l~~kr~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~IivTtR~~~v~ 270 (863)
..+-.++-++++|+.-..-| ...+...+.. ...|.-||++|.+....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 66667788999999765432 1222111211 12356688888876543
No 368
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.18 Score=55.30 Aligned_cols=88 Identities=23% Similarity=0.271 Sum_probs=48.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
...+|+++|..|+||||++..++... ......+.+.+++... .....+.+...++.++.+.. ...+..+....+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~al~- 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLMLH- 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHHHH-
Confidence 34699999999999999999988764 1122223445554332 12334445566666665542 2223333333332
Q ss_pred HhccCcEEEEEecc
Q 048126 225 ILSKKKFLLLLDDI 238 (863)
Q Consensus 225 ~l~~kr~LlVlDdv 238 (863)
.++++ -++++|-.
T Consensus 266 ~l~~~-d~VLIDTa 278 (420)
T PRK14721 266 ELRGK-HMVLIDTV 278 (420)
T ss_pred HhcCC-CEEEecCC
Confidence 34444 34556654
No 369
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.78 E-value=0.12 Score=50.64 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHH
Q 048126 150 IGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEK 198 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 198 (863)
+.|.|.+|+|||++|.+++.... +. =..++|++...+ ..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~-g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--AR-GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HC-CCcEEEEECCCC--HHHHHHH
Confidence 67899999999999999877762 22 245778876543 4444433
No 370
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.74 E-value=0.086 Score=53.11 Aligned_cols=122 Identities=21% Similarity=0.225 Sum_probs=69.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCC----------CCC---CEEEEEEeCCcc------CH--------------
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAP----------NDF---DVVIWVVVSKDL------QL-------------- 192 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------~~F---~~~~wv~~s~~~------~~-------------- 192 (863)
.-.+++|+|+.|.|||||.+.+..-....+ ..+ ..+.||+=...+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 337999999999999999999987431100 011 356676521111 11
Q ss_pred --------HHHHHHHHHHhCCCCc---cccCCChhHHH-HHHHHHhccCcEEEEEeccCCc------cccccccCCCCCC
Q 048126 193 --------EKIQEKIGRRIGFLDE---SWKNGSLEDKA-SDILRILSKKKFLLLLDDIWER------VDLTKVGVPFPDP 254 (863)
Q Consensus 193 --------~~~~~~i~~~l~~~~~---~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~------~~~~~~~~~l~~~ 254 (863)
.+...+.+++++...- ....-+-.+.+ -.|.+.|..++=|+|||.--.. ...-++...+..
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~- 187 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ- 187 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-
Confidence 1344455555554321 11222333333 3456788899999999975432 223333333322
Q ss_pred CCCcEEEEecCchhh
Q 048126 255 ENKSKIVFTTRFLEI 269 (863)
Q Consensus 255 ~~gs~IivTtR~~~v 269 (863)
.|.-|+++|-+-..
T Consensus 188 -eg~tIl~vtHDL~~ 201 (254)
T COG1121 188 -EGKTVLMVTHDLGL 201 (254)
T ss_pred -CCCEEEEEeCCcHH
Confidence 28889999988554
No 371
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.73 E-value=0.066 Score=57.86 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=36.5
Q ss_pred CCccchhHHHHHHHHHhcCC--------------CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEE--------------QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+||.++.+..+.-.+... ..+-|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35788888888876655421 24678899999999999999999887
No 372
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.73 E-value=0.036 Score=57.50 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=49.1
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCCh
Q 048126 136 DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSL 215 (863)
Q Consensus 136 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 215 (863)
..+++.+...+ +-+.++|+.|+|||++++...... . ...| .+.-++.+...+...+++.+-..+......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------ 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------ 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC------
Confidence 44555555544 455799999999999999988765 2 2222 244556666555555443322222110000
Q ss_pred hHHHHHHHHHhccCcEEEEEeccC
Q 048126 216 EDKASDILRILSKKKFLLLLDDIW 239 (863)
Q Consensus 216 ~~~~~~l~~~l~~kr~LlVlDdv~ 239 (863)
...--.+|+.++.+||+.
T Consensus 93 ------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 ------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ------EEEEESSSEEEEEEETTT
T ss_pred ------CCCCCCCcEEEEEecccC
Confidence 000013578888899985
No 373
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.73 E-value=0.052 Score=49.11 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 134 MFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 134 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.+++-+.|.. ..-.+|.+.|.-|+||||+++.++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444433 244689999999999999999999986
No 374
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.72 E-value=0.098 Score=55.66 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048126 150 IGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.+.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887
No 375
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.044 Score=49.34 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=40.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL 226 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (863)
.+-|.|.|.+|+||||+|..++... .| -|+++|+-..-..++...=++.. +..-+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHHHH
Confidence 3567899999999999999999655 22 36666654333333322211111 12234455666665555
Q ss_pred ccC
Q 048126 227 SKK 229 (863)
Q Consensus 227 ~~k 229 (863)
.+.
T Consensus 74 ~~G 76 (176)
T KOG3347|consen 74 IEG 76 (176)
T ss_pred hcC
Confidence 443
No 376
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.71 E-value=0.17 Score=50.42 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=39.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEE-------EEeCCccCHHHH--HHHHHHHhCCCCc
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIW-------VVVSKDLQLEKI--QEKIGRRIGFLDE 208 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w-------v~~s~~~~~~~~--~~~i~~~l~~~~~ 208 (863)
+...|.++||+|.||||..+.++.... .+..-..++= +......|+++. ++...++.++...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 456888999999999999999988872 2221111221 112334456553 6777888776543
No 377
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.69 E-value=0.056 Score=62.66 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=57.2
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 205 (863)
+.++|.+..++.+...+... +.+.++|.+|+||||+|+.+++... ..+++..+|+.-+ ..+...+++.++.+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np-~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNP-EDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCC-CcchHHHHHHHHHhcCH
Confidence 45789999888888877654 4688999999999999999998762 3456778887653 33667777777766653
No 378
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.68 E-value=0.14 Score=57.21 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=49.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
..|++++|+.|+||||++.+++... ..+..-..+..|+... .....+-++..++.++..... ..+..+....+ ..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~~~~~Dl~~aL-~~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--VKDAADLRLAL-SE 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--cCCchhHHHHH-Hh
Confidence 4699999999999999999999876 2222222455555432 123344555566666654321 11222222222 23
Q ss_pred hccCcEEEEEeccC
Q 048126 226 LSKKKFLLLLDDIW 239 (863)
Q Consensus 226 l~~kr~LlVlDdv~ 239 (863)
++++ ..+++|-.-
T Consensus 332 L~d~-d~VLIDTaG 344 (484)
T PRK06995 332 LRNK-HIVLIDTIG 344 (484)
T ss_pred ccCC-CeEEeCCCC
Confidence 3444 366667654
No 379
>PRK00625 shikimate kinase; Provisional
Probab=94.66 E-value=0.026 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.++||+|+||||+++.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 380
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.64 E-value=0.091 Score=50.71 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|..|.|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998765
No 381
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.64 E-value=0.11 Score=48.56 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999886
No 382
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.62 E-value=0.21 Score=50.61 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=34.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.-.++.|.|..|+||||+|.+++.... +.. ..++|++... +..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 456999999999999999877666541 222 3467776333 445666555 3444
No 383
>PRK04040 adenylate kinase; Provisional
Probab=94.62 E-value=0.029 Score=54.71 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999887
No 384
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.56 E-value=0.11 Score=57.03 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=53.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCc-----cccCCChh---
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFLDE-----SWKNGSLE--- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 216 (863)
.-..++|+|..|+|||||++.++... ..+.++++-+++... +.++....+..-+.... ..+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45688999999999999999999765 224556666766543 34554444433221110 00111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEeccCCc
Q 048126 217 --DKASDILRIL--SKKKFLLLLDDIWER 241 (863)
Q Consensus 217 --~~~~~l~~~l--~~kr~LlVlDdv~~~ 241 (863)
..+-.+.+++ +++.+|+++||+...
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1122344444 478999999999653
No 385
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.55 E-value=0.031 Score=56.31 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999886
No 386
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.53 E-value=0.024 Score=50.38 Aligned_cols=28 Identities=39% Similarity=0.503 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhcCCCCCCCE
Q 048126 150 IGLYGMGGVGKTTLLTKINNKLLGAPNDFDV 180 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~ 180 (863)
|-|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 5689999999999999999987 566643
No 387
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.52 E-value=0.35 Score=51.38 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 388
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.52 E-value=0.052 Score=50.07 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK 188 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 188 (863)
++|.|+|..|+|||||++.+.+... +..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 35666666666554
No 389
>PRK05922 type III secretion system ATPase; Validated
Probab=94.49 E-value=0.12 Score=56.67 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCc-----cccCCChh---
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLDE-----SWKNGSLE--- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 216 (863)
.-..++|+|..|+|||||++.+.... ..+...++.++... .....+.+.......... ..+.....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 44579999999999999999998764 22344444444432 334455444433322110 00111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEeccCCc
Q 048126 217 --DKASDILRIL--SKKKFLLLLDDIWER 241 (863)
Q Consensus 217 --~~~~~l~~~l--~~kr~LlVlDdv~~~ 241 (863)
..+-.+.+++ +++++|+++||+...
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1222344554 479999999999653
No 390
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.41 E-value=0.12 Score=56.63 Aligned_cols=91 Identities=20% Similarity=0.307 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCccc----cCCChhH---
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFLDESW----KNGSLED--- 217 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~----~~~~~~~--- 217 (863)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+++... +.++.+..+..-+...... ...+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999999875 235778888877643 4444444333211111000 1111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEeccCCc
Q 048126 218 ---KASDILRIL--SKKKFLLLLDDIWER 241 (863)
Q Consensus 218 ---~~~~l~~~l--~~kr~LlVlDdv~~~ 241 (863)
.+-.+.+++ +++++|+++||+...
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122234444 579999999999653
No 391
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.41 E-value=0.065 Score=57.25 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=39.8
Q ss_pred CCCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 125 CEPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-..+||.+..+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 35679999999888777777667778899999999999999998665
No 392
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.41 E-value=0.057 Score=52.69 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEE
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVV 185 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 185 (863)
.++|.|+|+.|+|||||++.+.... ...|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999987 57786555554
No 393
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.39 E-value=0.069 Score=53.54 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 134 MFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 134 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
...++++.+.. .+..+|+|.|++|+|||||.-.+...++ .+.+=-.++-|.-|.+++-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCC
Confidence 34455555543 4678999999999999999999998883 2222234555555555543
No 394
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.36 E-value=0.11 Score=60.33 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=51.9
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 205 (863)
+.++|.+..++.+...+.... -+.++|++|+||||+|+.+++.. . ...|...+++.-+. .+...+++.++.+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~~-~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNPE-DPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCCC-CCchHHHHHHHHhhch
Confidence 567899998888887776543 55599999999999999999887 2 23444444444332 2445567777766653
No 395
>PRK08149 ATP synthase SpaL; Validated
Probab=94.35 E-value=0.14 Score=56.06 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCC-----ccccCCCh----
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLD-----ESWKNGSL---- 215 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~---- 215 (863)
+-..++|+|..|+|||||++.++... .-+.+++..+.... ++.++............ ...+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45689999999999999999998754 22344444444433 45566666655332111 00011111
Q ss_pred -hHHHHHHHHHh--ccCcEEEEEeccCCc
Q 048126 216 -EDKASDILRIL--SKKKFLLLLDDIWER 241 (863)
Q Consensus 216 -~~~~~~l~~~l--~~kr~LlVlDdv~~~ 241 (863)
...+..+.+++ ++|++||++||+-..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 11223334444 479999999998653
No 396
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.30 E-value=0.28 Score=50.72 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=31.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD 189 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 189 (863)
.-+++.|.|.+|+|||++|.+++.... ..=..++|++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC
Confidence 457999999999999999999877652 22346788887643
No 397
>PRK05973 replicative DNA helicase; Provisional
Probab=94.30 E-value=0.26 Score=49.61 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=34.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKI 199 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 199 (863)
.-.++.|.|.+|+|||++|.+++.... +. =..++|++...+ ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 446899999999999999999877662 22 245777766554 44454443
No 398
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.30 E-value=0.031 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999876
No 399
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.15 Score=60.39 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=65.4
Q ss_pred CCccchhHHHHHHHHHhcC------C--CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------E--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQE 197 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 197 (863)
..++|-++.+..|.+.+.. + ....+.+.|+.|+|||-||++++.-. .+..+..+-|+.|.- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh
Confidence 3457888888888888753 1 34567889999999999999999877 455555555544432 22
Q ss_pred HHHHHhCCCCccccCCChhHHHHHHHHHhccCcEE-EEEeccCCc
Q 048126 198 KIGRRIGFLDESWKNGSLEDKASDILRILSKKKFL-LLLDDIWER 241 (863)
Q Consensus 198 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~L-lVlDdv~~~ 241 (863)
+.+.++.+. .-...+....|-+.++.++|- |+||||...
T Consensus 633 -vskligsp~----gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -VSKLIGSPP----GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -hhhccCCCc----ccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 333333321 111223344677888888874 555999753
No 400
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.22 E-value=0.043 Score=52.98 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...|.++|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999987
No 401
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.036 Score=51.62 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 048126 149 IIGLYGMGGVGKTTLLTKIN 168 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~ 168 (863)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999998
No 402
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.20 E-value=0.15 Score=47.34 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
.-.+++|+|..|.|||||++.+..-. . .....+|+.-. ..++... +-..-+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL-E---PDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC-C---CCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHH
Confidence 34689999999999999999998765 2 22333443210 0000000 011112222334555
Q ss_pred hccCcEEEEEeccCCccc---cccccCCCCCCCCCcEEEEecCchhhh
Q 048126 226 LSKKKFLLLLDDIWERVD---LTKVGVPFPDPENKSKIVFTTRFLEIC 270 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~~~---~~~~~~~l~~~~~gs~IivTtR~~~v~ 270 (863)
+-.++-++++|+.-..-| ...+...+... +..||++|.+.+..
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 666777899998754322 22222222111 23577787776554
No 403
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.20 E-value=0.077 Score=60.88 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++++|.+..++.+...+......-+.|+|..|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999888766555667899999999999999998753
No 404
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.20 E-value=0.11 Score=56.29 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=37.5
Q ss_pred CCccchhHHHHHHHHHhcC---------C-----CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE---------E-----QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..+..+..++.. + ..+-|.++|+.|+|||++|+.++...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999998888877732 0 14678999999999999999999886
No 405
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.17 E-value=0.12 Score=56.88 Aligned_cols=94 Identities=23% Similarity=0.327 Sum_probs=59.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCc-----cccCCChh---
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFLDE-----SWKNGSLE--- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 216 (863)
+-..++|.|..|+|||+|+.++.... . +.+-+.++|+-+++... +.++.+.+...-..... +.+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 44578999999999999999998775 2 23347888988877653 45666666543211110 00111111
Q ss_pred --HHHHHHHHHhc---cCcEEEEEeccCCc
Q 048126 217 --DKASDILRILS---KKKFLLLLDDIWER 241 (863)
Q Consensus 217 --~~~~~l~~~l~---~kr~LlVlDdv~~~ 241 (863)
..+-.+.++++ ++++|+++||+...
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 12334456654 58999999998653
No 406
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.17 E-value=0.13 Score=56.69 Aligned_cols=46 Identities=26% Similarity=0.209 Sum_probs=35.4
Q ss_pred CCccchhHHHHHHHHHhcC-------C---------CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE-------E---------QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+||.+..++.+...+.. . ..+.+.++|+.|+|||++|+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999988887655421 0 12568899999999999999999876
No 407
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.16 E-value=0.061 Score=55.83 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=41.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 205 (863)
+.-+++.|+|.+|+|||++|.++.... ......++||+.... ...+.+...+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 466899999999999999999999887 445788999988765 4444444443 443
No 408
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.16 E-value=0.31 Score=47.37 Aligned_cols=124 Identities=18% Similarity=0.191 Sum_probs=67.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEe-------------------CCccC---------------
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVV-------------------SKDLQ--------------- 191 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~-------------------s~~~~--------------- 191 (863)
.-.|++|+|+.|.|||||.+.+..=. +. =...+||.- -|.|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE-~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE-EP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc-CC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 44699999999999999999986543 22 123444421 12221
Q ss_pred ----------HHHHHHHHHHHhCCCCcc----ccCCChhHHHHHHHHHhccCcEEEEEeccCCccccccccCCC---C-C
Q 048126 192 ----------LEKIQEKIGRRIGFLDES----WKNGSLEDKASDILRILSKKKFLLLLDDIWERVDLTKVGVPF---P-D 253 (863)
Q Consensus 192 ----------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l---~-~ 253 (863)
.++...++++.+++.+.. ...+.-++..-.|.+.|.=++=++.||..-+.-|-+-+...+ . -
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 233444445555543311 011223334445677777788899999987653332221111 1 1
Q ss_pred CCCCcEEEEecCchhhhhcc
Q 048126 254 PENKSKIVFTTRFLEICGAM 273 (863)
Q Consensus 254 ~~~gs~IivTtR~~~v~~~~ 273 (863)
...|--.|+.|-....|...
T Consensus 183 A~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHcCCeEEEEechhHHHHHh
Confidence 23465566666665555443
No 409
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.15 E-value=0.035 Score=53.80 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 410
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.14 E-value=0.13 Score=56.62 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh-----CCCCccccCCChh----
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRI-----GFLDESWKNGSLE---- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~---- 216 (863)
.-..++|+|..|+|||||++.++... .....++++.--+.-++.++....+... ..... .+.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q-sd~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT-SDESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc-CCCCHHHHHHH
Confidence 34589999999999999999887654 1222344443223334554444333322 11110 0111111
Q ss_pred -HHHHHHHHHh--ccCcEEEEEeccCCc
Q 048126 217 -DKASDILRIL--SKKKFLLLLDDIWER 241 (863)
Q Consensus 217 -~~~~~l~~~l--~~kr~LlVlDdv~~~ 241 (863)
..+-.+.+++ +++.+|+++||+...
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 1122233444 478999999998653
No 411
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.23 Score=50.18 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=57.6
Q ss_pred CccchhHHHHHHHHHhcC---------C---CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHH
Q 048126 127 PTVGLESMFDKVWRCLGE---------E---QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEK 194 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 194 (863)
++-|.+..++.|.+...- + ..+-|.++|++|.||+.||++|+... .. -|++||.. +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS----D 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS----D 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH----H
Confidence 456899999998887631 1 25788999999999999999999886 22 23444433 1
Q ss_pred HHHHHHHHhCCCCccccCCChhHHHHHHHHHhc-cCcEEEEEeccCC
Q 048126 195 IQEKIGRRIGFLDESWKNGSLEDKASDILRILS-KKKFLLLLDDIWE 240 (863)
Q Consensus 195 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~ 240 (863)
+...- +| ..+.+...|.+.-+ +|+-+|.+|.++.
T Consensus 202 LvSKW---mG---------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 LVSKW---MG---------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHH---hc---------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11111 11 12334444444333 5889999999863
No 412
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.12 E-value=0.092 Score=51.44 Aligned_cols=50 Identities=32% Similarity=0.525 Sum_probs=33.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLD 207 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 207 (863)
.|+|.|-||+||||+|..++.+.. .++.|+ +.-|+...++++ ..+||...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~~-VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGYN-VLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCce-EEEEeCCCCCCh-------HHhcCCCC
Confidence 689999999999999999776662 223243 455666665554 34556554
No 413
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.11 E-value=0.27 Score=55.90 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc--
Q 048126 135 FDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW-- 210 (863)
Q Consensus 135 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 210 (863)
++.+-+.|.. ..-+++.|.|.+|+|||||+.+++.... ..=+.++|++.-+. ..++.+.. +.++.....+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~ 322 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQ 322 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhh
Confidence 4455555654 2567999999999999999999988762 23346777765543 44555443 4555432110
Q ss_pred -----------cCCChhHHHHHHHHHhcc-CcEEEEEecc
Q 048126 211 -----------KNGSLEDKASDILRILSK-KKFLLLLDDI 238 (863)
Q Consensus 211 -----------~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 238 (863)
.....++.+..+.+.+.. +.-.+|+|.+
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 111234555555555543 4446777776
No 414
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.09 E-value=0.1 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhc
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLL 172 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~ 172 (863)
+.|.|.|.+|+||||+|+.+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999999873
No 415
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.05 E-value=0.036 Score=54.89 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|+|.|..|+||||+|+.+..-.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 416
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.05 E-value=0.14 Score=56.21 Aligned_cols=91 Identities=24% Similarity=0.348 Sum_probs=50.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCc-----cccCCChhH--
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLDE-----SWKNGSLED-- 217 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 217 (863)
.-..++|+|..|+|||||++.++... . . +..+.+.+.+ .-.+.++.+..+..-+.... ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~-~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT-D---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 44689999999999999999888765 1 1 2333333333 33345555554433221110 001111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEeccCCc
Q 048126 218 ---KASDILRIL--SKKKFLLLLDDIWER 241 (863)
Q Consensus 218 ---~~~~l~~~l--~~kr~LlVlDdv~~~ 241 (863)
.+-.+.+++ +++.+||++||+...
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 222344555 478999999998653
No 417
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.05 E-value=0.17 Score=55.84 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=58.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCC-----ccccCCChh---
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLD-----ESWKNGSLE--- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 216 (863)
+-..++|.|..|+|||||+.+++.... .++=+.++++-+++.. .+.++.+.+...-.... ...+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 445789999999999999999877662 1222467788887664 35566666665322111 000111111
Q ss_pred --HHHHHHHHHh---ccCcEEEEEeccCCc
Q 048126 217 --DKASDILRIL---SKKKFLLLLDDIWER 241 (863)
Q Consensus 217 --~~~~~l~~~l---~~kr~LlVlDdv~~~ 241 (863)
..+-.+.+++ +++.+||++||+...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1233355666 679999999998653
No 418
>PRK06851 hypothetical protein; Provisional
Probab=94.04 E-value=0.64 Score=50.06 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc
Q 048126 129 VGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD 189 (863)
Q Consensus 129 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 189 (863)
-|.-.-.+.+. .+--+++.|.|.+|+|||||++.++.... +..++..++-|-+.+
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 35444455544 34457899999999999999999999883 556777766665554
No 419
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.02 E-value=0.32 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+..|+|++|+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998764
No 420
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.01 E-value=0.18 Score=52.22 Aligned_cols=104 Identities=21% Similarity=0.219 Sum_probs=58.0
Q ss_pred cchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCc
Q 048126 129 VGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDE 208 (863)
Q Consensus 129 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 208 (863)
.|...+..+.+..+......+|.|.|..|.||||+++.+.... ...-..++.+ .++.... +.. ..++..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iiti--Edp~E~~--~~~-~~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITV--EDPVEYQ--IPG-INQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEE--CCCceec--CCC-ceEEEe---
Confidence 4544444333333333455689999999999999999887765 1111123332 2221110 000 011111
Q ss_pred cccCCChhHHHHHHHHHhccCcEEEEEeccCCccccc
Q 048126 209 SWKNGSLEDKASDILRILSKKKFLLLLDDIWERVDLT 245 (863)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 245 (863)
...........++..++..+=.|+++++.+.....
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 11111245667778888888899999998876443
No 421
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.46 Score=54.05 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=34.3
Q ss_pred CccchhHHHHHH---HHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKV---WRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l---~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.-|.|+.++++ ++.|.++ -++-+..+|++|.|||.||++++...
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 346888766655 4555542 24668899999999999999999987
No 422
>PRK15453 phosphoribulokinase; Provisional
Probab=93.98 E-value=0.28 Score=50.32 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+..+|+|.|.+|+||||+|+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999776
No 423
>PRK06217 hypothetical protein; Validated
Probab=93.97 E-value=0.043 Score=53.51 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 424
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.96 E-value=0.19 Score=55.39 Aligned_cols=91 Identities=21% Similarity=0.295 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCc-----cccCCChh---
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLDE-----SWKNGSLE--- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 216 (863)
.-..++|+|..|+|||||++.+.... ..+.+++..+.... ++..+...+...-+.... ..+.....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 44679999999999999999998654 22444444454433 345555555544322110 00111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEeccCCc
Q 048126 217 --DKASDILRIL--SKKKFLLLLDDIWER 241 (863)
Q Consensus 217 --~~~~~l~~~l--~~kr~LlVlDdv~~~ 241 (863)
..+..+.+++ +++++||++||+...
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 1122334444 578999999998653
No 425
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.95 E-value=0.14 Score=56.04 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 134 MFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 134 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+.+++.+.......+.|.|.||+|||+|.+++.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34556666665667789999999999999999999988
No 426
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.95 E-value=0.063 Score=57.35 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=40.7
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+||-++.+..|...+.++...-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5579999999999988888888888899999999999999997765
No 427
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.95 E-value=0.092 Score=53.41 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=41.7
Q ss_pred HHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHH
Q 048126 136 DKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQ 196 (863)
Q Consensus 136 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 196 (863)
.+++..+.. ++..+|+|.|.+|+|||||.-.+...+ ..+.+--.++-|+-|.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 445555543 567899999999999999999998887 333443455666666666544443
No 428
>PRK05439 pantothenate kinase; Provisional
Probab=93.94 E-value=0.39 Score=50.46 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998865
No 429
>PF13245 AAA_19: Part of AAA domain
Probab=93.93 E-value=0.14 Score=41.37 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=18.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44678889999999995555544443
No 430
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.92 E-value=0.25 Score=47.20 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=32.6
Q ss_pred ccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 128 TVGLESMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+||....+.++++.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888877753 233556699999999999999999865
No 431
>PTZ00494 tuzin-like protein; Provisional
Probab=93.91 E-value=2.8 Score=45.44 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=95.6
Q ss_pred CCccchhHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
..+|.|+.+-..+...|.. ..++++.+.|.-|.||++|.+...... .+ ..++|.+... ++-++.+.+.
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~~-----paV~VDVRg~---EDtLrsVVKA 441 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-GV-----ALVHVDVGGT---EDTLRSVVRA 441 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-CC-----CeEEEEecCC---cchHHHHHHH
Confidence 4578998887776666643 578999999999999999999988776 22 3577877654 4567888889
Q ss_pred hCCCCccccCCChhHHHHHHHH---HhccCcEEEEEeccCCccccccc---cCCCCCCCCCcEEEEecCchhhhhc---c
Q 048126 203 IGFLDESWKNGSLEDKASDILR---ILSKKKFLLLLDDIWERVDLTKV---GVPFPDPENKSKIVFTTRFLEICGA---M 273 (863)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~---~l~~kr~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~IivTtR~~~v~~~---~ 273 (863)
++.+.-+.-..-.+-..+.... ...++.=+||+-= .+-..+..+ ...+.....-|+|++----+.+-.. .
T Consensus 442 LgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~L 520 (664)
T PTZ00494 442 LGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSS 520 (664)
T ss_pred hCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccC
Confidence 9876532112222222222222 2345555666531 111111111 0011122234667664443333111 1
Q ss_pred cccceEeecCCChHHHHHHHHHHh
Q 048126 274 KAHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
.--..|.+++++.++|.++-++..
T Consensus 521 PRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 521 RRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccceeEecCCcCHHHHHHHHhccc
Confidence 223468899999999999987764
No 432
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.89 E-value=0.21 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 433
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.89 E-value=0.043 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 434
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.88 E-value=0.042 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998865
No 435
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=1.2 Score=50.75 Aligned_cols=89 Identities=24% Similarity=0.215 Sum_probs=56.3
Q ss_pred cchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 129 VGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 129 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
-|..+.++-+.+.+.- ....-|.++|++|.|||-||.+++... . .-||+|-.+ ++
T Consensus 670 gg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~-------~~fisvKGP----El 737 (952)
T KOG0735|consen 670 GGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-N-------LRFISVKGP----EL 737 (952)
T ss_pred ccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-C-------eeEEEecCH----HH
Confidence 3555555555555531 123468899999999999999999876 1 235666554 22
Q ss_pred HHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCC
Q 048126 196 QEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
+... + +.+++.....+.+.-..|+++|.||..+.
T Consensus 738 L~Ky---I--------GaSEq~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 738 LSKY---I--------GASEQNVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred HHHH---h--------cccHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2221 2 23334444455555567999999999875
No 436
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.87 E-value=0.23 Score=54.95 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHhhhcCC-----CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc------ccCC
Q 048126 146 QVGIIGLYGMGGVGKTTLL-TKINNKLLGA-----PNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES------WKNG 213 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~ 213 (863)
+-..++|.|..|+|||+|| ..+.+.. .+ .++-+.++++-+++...-..-....+++-+..... .+..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 3457899999999999997 5566664 11 12446788999988764332233333333311110 0111
Q ss_pred ChhH-----HHHHHHHHh--ccCcEEEEEeccCC
Q 048126 214 SLED-----KASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 214 ~~~~-----~~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
...+ ..-.+.+++ +++.+|+|+||+..
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1111 112233444 47899999999865
No 437
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.87 E-value=0.072 Score=56.76 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=37.0
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 5679999999887765544455568899999999999999997654
No 438
>PRK13947 shikimate kinase; Provisional
Probab=93.87 E-value=0.049 Score=52.43 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 439
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.86 E-value=0.35 Score=48.20 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|.|..|.|||||++.++.-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44689999999999999999997654
No 440
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.85 E-value=0.06 Score=52.08 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 441
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.85 E-value=0.19 Score=48.36 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC---ccCHHHHHHHHH--HH--hCCCCccccCCChh--
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK---DLQLEKIQEKIG--RR--IGFLDESWKNGSLE-- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~--~~--l~~~~~~~~~~~~~-- 216 (863)
....|-|+|..|-||||.|.-++-+.. ...+. +..|-.-+ ..+-...+..+- .- .+... .+...+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~-~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGF-TWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCC-cccCCCcHHH
Confidence 347899999999999999999988862 33343 33333222 233344443321 00 01100 01111111
Q ss_pred -----HHHHHHHHHhcc-CcEEEEEeccCCc-----cccccccCCCCCCCCCcEEEEecCch
Q 048126 217 -----DKASDILRILSK-KKFLLLLDDIWER-----VDLTKVGVPFPDPENKSKIVFTTRFL 267 (863)
Q Consensus 217 -----~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~ 267 (863)
+.....++.+.. +-=++|||.+-.. .+.+++...+.....+..||+|-|+.
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122333444444 4459999998543 23344444444445567899999985
No 442
>PRK13949 shikimate kinase; Provisional
Probab=93.83 E-value=0.053 Score=51.98 Aligned_cols=24 Identities=42% Similarity=0.438 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.|.|+|+.|+||||+++.++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999987
No 443
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.82 E-value=0.051 Score=52.82 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 444
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.82 E-value=0.06 Score=52.18 Aligned_cols=23 Identities=43% Similarity=0.804 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|+|.|..|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 445
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.81 E-value=0.2 Score=55.00 Aligned_cols=94 Identities=14% Similarity=0.249 Sum_probs=58.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCC--CCCC---------EEEEEEeCCccCHHHHHHHHHHHhCCCCcc-----
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAP--NDFD---------VVIWVVVSKDLQLEKIQEKIGRRIGFLDES----- 209 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----- 209 (863)
+-..++|.|-.|+|||||+.++++.. ... ...| .++++-+++.....+.+...+..-+.....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 44578999999999999999999876 210 0012 667888888766666555555554421110
Q ss_pred -ccCCChh-----HHHHHHHHHhc---cCcEEEEEeccCC
Q 048126 210 -WKNGSLE-----DKASDILRILS---KKKFLLLLDDIWE 240 (863)
Q Consensus 210 -~~~~~~~-----~~~~~l~~~l~---~kr~LlVlDdv~~ 240 (863)
.+..... ..+-.+.++++ ++.+|+++||+..
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 0111111 12233556665 5899999999854
No 446
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.28 Score=48.09 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=39.9
Q ss_pred HHHHHHHHhccCcEEEEEeccCCccccccccCC---CC-CCCCCcEEEEecCchhhhhcccccceEe
Q 048126 218 KASDILRILSKKKFLLLLDDIWERVDLTKVGVP---FP-DPENKSKIVFTTRFLEICGAMKAHEFLK 280 (863)
Q Consensus 218 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~---l~-~~~~gs~IivTtR~~~v~~~~~~~~~~~ 280 (863)
...++.+.+--++-+.|||..++--|.+.+... .. -...|+-+++.|-.+.++.....+.++-
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 344555666667889999999876555443211 00 1234677888888888888776555543
No 447
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.79 E-value=0.052 Score=49.96 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 448
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.76 E-value=0.055 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998876
No 449
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.74 E-value=0.2 Score=59.00 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=62.0
Q ss_pred HHHHHhc-C--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc---c
Q 048126 137 KVWRCLG-E--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES---W 210 (863)
Q Consensus 137 ~l~~~L~-~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~ 210 (863)
.+-.+|. . +.-+++-|+|.+|+||||||.+++.... ..=..++||.....++. ..+++++...+. .
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~ 118 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVS 118 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEe
Confidence 3444454 2 2467889999999999999988766551 22256789987777664 366777765432 1
Q ss_pred cCCChhHHHHHHHHHhcc-CcEEEEEeccC
Q 048126 211 KNGSLEDKASDILRILSK-KKFLLLLDDIW 239 (863)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 239 (863)
...+.++....+.+.++. +--+||+|.+.
T Consensus 119 ~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 119 QPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred cCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 233445555555555544 56689999985
No 450
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.73 E-value=0.14 Score=61.23 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|+...+..+.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3579999888888776642 334577899999999999999998865
No 451
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.67 E-value=0.091 Score=49.23 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 133 SMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 133 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+++|.+++.+ +++.++|..|||||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 447778887754 799999999999999999998874
No 452
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.66 E-value=0.21 Score=54.92 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=58.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCC-----ccccCCChh---
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKIGRRIGFLD-----ESWKNGSLE--- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 216 (863)
+-..++|.|..|+|||||+.++..... .++=+.++++-+++.. .+.++.+.+...-.... ...+.....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 445789999999999999999887751 2223477888887664 35666666654321111 000111111
Q ss_pred --HHHHHHHHHh---ccCcEEEEEeccCCc
Q 048126 217 --DKASDILRIL---SKKKFLLLLDDIWER 241 (863)
Q Consensus 217 --~~~~~l~~~l---~~kr~LlVlDdv~~~ 241 (863)
..+-.+.+++ +++.+||++||+...
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1233455666 458999999999653
No 453
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.2 Score=47.40 Aligned_cols=115 Identities=25% Similarity=0.288 Sum_probs=60.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL--QLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
-.+++|+|..|.|||||++.+.... ......+++.-.... ..... ...++... +...-+...-.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~---qlS~G~~~r~~l~~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP---QLSGGQRQRVALAR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHH----HhceEEEe---eCCHHHHHHHHHHH
Confidence 3699999999999999999998765 223444554321111 11111 11122111 11112223333555
Q ss_pred HhccCcEEEEEeccCCccc---cccccCCCCC-CCCCcEEEEecCchhhhhc
Q 048126 225 ILSKKKFLLLLDDIWERVD---LTKVGVPFPD-PENKSKIVFTTRFLEICGA 272 (863)
Q Consensus 225 ~l~~kr~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~IivTtR~~~v~~~ 272 (863)
.+...+-++++|+.....| ...+...+.. ...+.-|+++|.+......
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5666778999999865432 1122111111 1124568888877665443
No 454
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.64 E-value=0.093 Score=55.23 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=41.0
Q ss_pred CCccchhHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.++.++++++.+.. .+-+++.++|+.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999853 466899999999999999999999887
No 455
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.63 E-value=0.24 Score=54.98 Aligned_cols=95 Identities=11% Similarity=0.143 Sum_probs=57.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC--EEEEEEeCCcc-CHHHHHHHHHHHhCCCCc-----cccCCChh-
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD--VVIWVVVSKDL-QLEKIQEKIGRRIGFLDE-----SWKNGSLE- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~- 216 (863)
+-..++|.|..|+|||||+.++++.. .....+. .++++-+++.. .+.++.+.+...-..... ..+.....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 34578999999999999999999876 2211111 66777777664 355666666543221110 00111111
Q ss_pred ----HHHHHHHHHhc---cCcEEEEEeccCCc
Q 048126 217 ----DKASDILRILS---KKKFLLLLDDIWER 241 (863)
Q Consensus 217 ----~~~~~l~~~l~---~kr~LlVlDdv~~~ 241 (863)
-.+..+.++++ ++++||++||+...
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 12333556665 68899999998653
No 456
>PRK14530 adenylate kinase; Provisional
Probab=93.62 E-value=0.058 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 457
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.60 E-value=0.07 Score=53.19 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.6
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 140 RCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 140 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.+.+.++++|+++|..|+|||||..++....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445689999999999999999999998875
No 458
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.59 E-value=0.33 Score=51.40 Aligned_cols=90 Identities=24% Similarity=0.312 Sum_probs=51.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCc-----cccCCChh---
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLDE-----SWKNGSLE--- 216 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 216 (863)
.-..++|+|..|+|||||++.+.... . -+..++..+... -++.++.......-+.... ..+.....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44688999999999999999998765 1 234444544433 3455555555543322110 00111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEeccCC
Q 048126 217 --DKASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 217 --~~~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
..+-.+.+++ ++|.+|+++||+..
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1122233333 57899999999855
No 459
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.57 E-value=0.1 Score=55.02 Aligned_cols=49 Identities=29% Similarity=0.327 Sum_probs=34.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEK 198 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 198 (863)
.+++.+.|.|||||||+|.+.+-... .....++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999776662 22244777766665555555443
No 460
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.57 E-value=0.15 Score=51.85 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcC----CCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 135 FDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLG----APNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 135 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
.+.+...+.... +..|+|++|.||||++..+.....+ ....-+..+-++......+..++..+.+
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 344444443332 7889999999999877777666511 0123344455555555455555555544
No 461
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.55 E-value=0.06 Score=53.80 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 462
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.54 E-value=0.056 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999865
No 463
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.52 E-value=0.38 Score=45.92 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=46.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhcc-
Q 048126 150 IGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSK- 228 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 228 (863)
+.|.|..|+|||++|.++.... ...++|+.-.+.++.+ +.+.|...-...... ....+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~---w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAH---WRTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCC---ceEeecHHHHHHHHHhc
Confidence 6789999999999999997652 2357777777766553 444444322222222 2222333334444422
Q ss_pred -CcEEEEEeccC
Q 048126 229 -KKFLLLLDDIW 239 (863)
Q Consensus 229 -kr~LlVlDdv~ 239 (863)
+.-.+++|.+.
T Consensus 72 ~~~~~VLIDclt 83 (169)
T cd00544 72 DPGDVVLIDCLT 83 (169)
T ss_pred CCCCEEEEEcHh
Confidence 23479999873
No 464
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.49 E-value=0.073 Score=50.68 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999999887
No 465
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.46 E-value=0.07 Score=52.38 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 466
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.43 E-value=0.27 Score=50.37 Aligned_cols=59 Identities=32% Similarity=0.405 Sum_probs=38.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCC-------CEEEEEEeCCcc-CHHHHHHHHHHHhCCCC
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDF-------DVVIWVVVSKDL-QLEKIQEKIGRRIGFLD 207 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-------~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~ 207 (863)
++.|+|.||+||||++-..+--...-++.| ..+++|++-... ++-.-++.+..++++..
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 445679999999999987654432222333 367787765432 45556677788887754
No 467
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.89 Score=47.85 Aligned_cols=49 Identities=31% Similarity=0.303 Sum_probs=36.8
Q ss_pred CccchhHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 048126 127 PTVGLESMFDKVWRCLGE--------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF 178 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F 178 (863)
++-|.+..++.+.+...- ...+-|-++|++|.|||-||++++.+. ...|
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~f 155 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANF 155 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCc
Confidence 345677777777666531 245678899999999999999999987 5556
No 468
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.39 E-value=0.065 Score=50.51 Aligned_cols=22 Identities=45% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048126 150 IGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (863)
|.|+|++|+||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 469
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.37 E-value=0.068 Score=47.74 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048126 150 IGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (863)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999876
No 470
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.03 Score=53.38 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=17.5
Q ss_pred CCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccC
Q 048126 691 HNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCF 735 (863)
Q Consensus 691 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 735 (863)
++|+.|+|++|+.+++-...+. ..+++|+.|.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L--------~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACL--------LKLKNLRRLHLYDLP 187 (221)
T ss_pred cchheeeccCCCeechhHHHHH--------HHhhhhHHHHhcCch
Confidence 4555555555555543333332 125555555555543
No 471
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.34 E-value=0.25 Score=50.64 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=54.3
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHhhhcCCCCCCCEE-EEEEeCCcc-CHHHHHHHHHHHhCCCC-----ccccCCChhH
Q 048126 146 QVGIIGLYGMGGVGKTTLL-TKINNKLLGAPNDFDVV-IWVVVSKDL-QLEKIQEKIGRRIGFLD-----ESWKNGSLED 217 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 217 (863)
+-..++|.|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. .+.++.+.+.+.-.... ...+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3457899999999999996 5566543 22334 677777664 35566666654321110 0001111111
Q ss_pred -----HHHHHHHHh--ccCcEEEEEeccCCc-cccccc
Q 048126 218 -----KASDILRIL--SKKKFLLLLDDIWER-VDLTKV 247 (863)
Q Consensus 218 -----~~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~~ 247 (863)
.+-.+.+++ +++.+|+|+||+... ..+.++
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 112233333 478999999999654 234443
No 472
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.33 E-value=0.56 Score=49.03 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=36.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
.-.++.|.|.+|+||||++.+++.... ..+=..++|++...+ ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 345888999999999999999987762 221246788876553 45555555443
No 473
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.31 E-value=0.052 Score=29.63 Aligned_cols=16 Identities=50% Similarity=0.769 Sum_probs=6.1
Q ss_pred CCCeEEccCCCccccc
Q 048126 565 SLEHLDLSGTAITHLP 580 (863)
Q Consensus 565 ~L~~L~L~~~~l~~lp 580 (863)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554444
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.30 E-value=0.078 Score=51.04 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...|.|+|+.|+||||+|+.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999999876
No 475
>PRK13975 thymidylate kinase; Provisional
Probab=93.29 E-value=0.072 Score=52.64 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|.|+.|+||||+|+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999988
No 476
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.27 E-value=0.13 Score=58.37 Aligned_cols=53 Identities=28% Similarity=0.405 Sum_probs=40.9
Q ss_pred ccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEE
Q 048126 128 TVGLESMFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVV 185 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 185 (863)
++--.+-+++|..||.. ...+++.+.|++|+||||.++.+++.. .|+.+-|..
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 33445667888888854 235689999999999999999999886 577777864
No 477
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.24 E-value=0.093 Score=50.09 Aligned_cols=22 Identities=55% Similarity=0.679 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048126 150 IGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (863)
|.|.|.+|+||||+++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999999887
No 478
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.20 E-value=0.24 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 455789999999999999999998764
No 479
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.19 E-value=0.18 Score=45.72 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=59.5
Q ss_pred CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchh-hhcCCCCC
Q 048126 512 TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLK 590 (863)
Q Consensus 512 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~ 590 (863)
+..|++|+.+.+.. .+..++...|.+++.|+.+.+.++ ....-...+.++.+|+.+.+.. .+..++.. +..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 46778888888875 577788888888888999988875 3322234566777888888865 55555543 56688888
Q ss_pred EEecCCccccCCCcHHHhhcCCCCcEEEeec
Q 048126 591 CLNLEYMYNLNQFPRLVMSAFSKLQVLRILK 621 (863)
Q Consensus 591 ~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~ 621 (863)
.+.+..+ +..++...+.++ +|+.+.+..
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 8888653 566666666676 777777653
No 480
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.19 E-value=0.34 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|+|.|..|+||||+|+.+....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 481
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.18 E-value=0.073 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999876
No 482
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.17 E-value=0.061 Score=64.23 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=88.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc-cCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW-KNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 224 (863)
+..++.|+|+.|.||||+.+.+.....-... .++|++.....+ ..+.++...++....-. ...+...-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 4479999999999999999998765100001 111211111000 00111111111000000 00001111112222
Q ss_pred Hhc--cCcEEEEEeccCCcccc---c----cccCCCCCCCCCcEEEEecCchhhhhcccccce---EeecCCChHHHHHH
Q 048126 225 ILS--KKKFLLLLDDIWERVDL---T----KVGVPFPDPENKSKIVFTTRFLEICGAMKAHEF---LKVECLGPEDAWRL 292 (863)
Q Consensus 225 ~l~--~kr~LlVlDdv~~~~~~---~----~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~---~~l~~L~~~e~~~l 292 (863)
.+. ..+-|+++|..-...+. . .+...+. ..|+.+|+||-..++......... ..+. ++.+ ...
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~- 470 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS- 470 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-
Confidence 332 47899999998754321 1 1222221 357889999999877443221111 1111 1111 000
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 048126 293 FRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKKTTQEWHHAIQILRRS 352 (863)
Q Consensus 293 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~l~~~ 352 (863)
|.-++.. .. +. ...|-+|++++ |+|-.+..-|..+.+ ....+...+++.|...
T Consensus 471 p~Ykl~~---G~-~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 471 PTYKLLK---GI-PG-ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred eEEEECC---CC-CC-CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 0000000 00 11 23578888877 788888887877754 3445666666666543
No 483
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=93.17 E-value=0.62 Score=50.89 Aligned_cols=77 Identities=29% Similarity=0.302 Sum_probs=61.6
Q ss_pred ccchhHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-------CHHHHHH
Q 048126 128 TVGLESMFDKVWRCLG---EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-------QLEKIQE 197 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-------~~~~~~~ 197 (863)
.|||+.+++.|.+-|. +++..+-.|.|--|.|||.+++.+.+... .+.| .++.|.+|.+. ....+++
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~--~~~f-vvs~v~ls~e~~lh~~~g~~~~~Yr 103 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERAL--EKGF-VVSEVDLSPERPLHGTGGQLEALYR 103 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHH--HcCC-EEEEEecCCCcccccccccHHHHHH
Confidence 3999999999988775 46677889999999999999999998873 4556 57788887743 3557899
Q ss_pred HHHHHhCCCC
Q 048126 198 KIGRRIGFLD 207 (863)
Q Consensus 198 ~i~~~l~~~~ 207 (863)
.|++.+....
T Consensus 104 ~l~~nL~t~~ 113 (416)
T PF10923_consen 104 ELMRNLSTKT 113 (416)
T ss_pred HHHHhcCCCC
Confidence 9999987654
No 484
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.15 E-value=0.083 Score=48.73 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998887654
No 485
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.15 E-value=2 Score=44.63 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 134 MFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 134 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-+.+...+..+++ +...++|+.|+||+++|..++...
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 34567777766654 577799999999999999998776
No 486
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.15 E-value=1 Score=51.35 Aligned_cols=240 Identities=16% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCccCCCccCCCchhhhhhHHHHHHHHHHHHHHHhcCCc--
Q 048126 31 ANAENQQMRQLNTVQGWLSRVEAVETEVGELMRDSSQEVDKLCPGGCCSKNCKSSFKFGKRVAKTLQLVNNLMGEGAF-- 108 (863)
Q Consensus 31 ~~ae~~~~~~~~~v~~wl~~l~~~~y~~ed~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~-- 108 (863)
+.-.+.......+.+.--++.+...-..++.++.+...+.+. +...+|-+...++.+.............+
T Consensus 236 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~-------k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~ 308 (530)
T COG0488 236 SSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKA-------KKAKSRIKRLEKLEARLAEERPVEEGKPLAF 308 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-------HHHHHHHHHHHHHHhhhhhccccccccccee
Q ss_pred ccccccCCCCccccCCCCCccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEE---
Q 048126 109 DAVAEKVRPPAVDQRPCEPTVGLESMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIW--- 183 (863)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w--- 183 (863)
.......+.+...-....-.+|.+.. ..|.+-+.- ..-..|+|+|+.|+|||||.+.+.... ...=..+.|
T Consensus 309 ~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~---~~~~G~v~~g~~ 384 (530)
T COG0488 309 RFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL---GPLSGTVKVGET 384 (530)
T ss_pred eccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc---ccCCceEEeCCc
Q ss_pred ----------------------EEeCCccCHHHHHHHHHHHhCCCCccc-----cCCChhHHHHHHHHHhccCcEEEEEe
Q 048126 184 ----------------------VVVSKDLQLEKIQEKIGRRIGFLDESW-----KNGSLEDKASDILRILSKKKFLLLLD 236 (863)
Q Consensus 184 ----------------------v~~s~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~l~~~l~~kr~LlVlD 236 (863)
+.-..+.....-.+..+.+++...+.. .-+.-+...-.+...+-.++-+||||
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD 464 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD 464 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc
Q ss_pred ccCCccccccc--cCCCCCCCCCcEEEEecCchhhhhcccccceEeecC
Q 048126 237 DIWERVDLTKV--GVPFPDPENKSKIVFTTRFLEICGAMKAHEFLKVEC 283 (863)
Q Consensus 237 dv~~~~~~~~~--~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~ 283 (863)
.--+.-|.+.+ ....-..-.|+ ||+.|-+........ ..++.+.+
T Consensus 465 EPTNhLDi~s~~aLe~aL~~f~Gt-vl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 465 EPTNHLDIESLEALEEALLDFEGT-VLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred CCCccCCHHHHHHHHHHHHhCCCe-EEEEeCCHHHHHhhc-ceEEEEcC
No 487
>PRK13948 shikimate kinase; Provisional
Probab=93.10 E-value=0.099 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....|.++|+.|+||||+++.+++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999886
No 488
>PRK14527 adenylate kinase; Provisional
Probab=93.10 E-value=0.09 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|.|+|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 489
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.09 E-value=0.12 Score=51.17 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|..|.|||||++.++-=.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44689999999999999999998654
No 490
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.06 E-value=0.11 Score=54.82 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
+++.+.|-|||||||+|...+-...+ .. ..+.-|+.....++.++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~--~G-~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR--RG-KRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH--TT-S-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh--CC-CCeeEeecCCCccHHHH
Confidence 68899999999999999888777632 12 23555554444333333
No 491
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.05 E-value=0.36 Score=46.19 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=46.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccC-CChhHHHHHHHHHh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKN-GSLEDKASDILRIL 226 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~~l 226 (863)
.++.|.|.+|+||||+|..++... . . .++++.-...+ ..++.+.|..........|.. ....++...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368899999999999999998775 1 1 23444444433 334555555444333322211 11223444444433
Q ss_pred ccCcEEEEEeccC
Q 048126 227 SKKKFLLLLDDIW 239 (863)
Q Consensus 227 ~~kr~LlVlDdv~ 239 (863)
.+ .-++++|.+.
T Consensus 75 ~~-~~~VlID~Lt 86 (170)
T PRK05800 75 AP-GRCVLVDCLT 86 (170)
T ss_pred CC-CCEEEehhHH
Confidence 33 3378889873
No 492
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.04 E-value=0.065 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048126 150 IGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (863)
|.++|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 493
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.04 E-value=0.11 Score=48.76 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEE
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIW 183 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w 183 (863)
|++|+|+.|+|||||+..+.... + ...+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l-~-~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL-K-ARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-H-hcCCeEEEE
Confidence 58899999999999999999987 2 234544433
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.96 E-value=0.094 Score=51.87 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|+|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 495
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.94 E-value=0.16 Score=47.50 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=25.7
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 143 GEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 143 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+..+|.+.|..|.||||+|.+++...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 34566799999999999999999999987
No 496
>PRK13946 shikimate kinase; Provisional
Probab=92.93 E-value=0.095 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+.|.++|+.|+||||+++.+++..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999987
No 497
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.92 E-value=0.88 Score=48.19 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=41.2
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHH
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIG 200 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~ 200 (863)
+++.+.. .+-..++|.|..|+|||+|++++++.. +-+.++++-+.+..+ +.++++++-
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 3444432 344589999999999999999999865 235788998887643 455666553
No 498
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.92 E-value=0.28 Score=53.94 Aligned_cols=92 Identities=22% Similarity=0.283 Sum_probs=52.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCC-----ccccCCChhH-
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLD-----ESWKNGSLED- 217 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 217 (863)
..-..++|+|..|+|||||++.+.+.. +.+..+++.+.+. ..+.+...+....-.... ...+......
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 345689999999999999999988754 3344566666554 334455555432110000 0001111111
Q ss_pred ----HHHHHHHHh--ccCcEEEEEeccCCc
Q 048126 218 ----KASDILRIL--SKKKFLLLLDDIWER 241 (863)
Q Consensus 218 ----~~~~l~~~l--~~kr~LlVlDdv~~~ 241 (863)
.+-.+.+++ +++++||++||+...
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 122334444 478999999999653
No 499
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.89 E-value=0.081 Score=50.48 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 048126 150 IGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~ 170 (863)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999865
No 500
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.89 E-value=0.083 Score=51.68 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
Done!