Query 048126
Match_columns 863
No_of_seqs 551 out of 4140
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3E-48 1E-52 447.0 20.4 312 129-468 131-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 6.5E-40 2.2E-44 379.0 18.2 286 127-462 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6E-38 2E-42 401.1 27.6 313 125-468 123-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.2E-35 1.4E-39 343.2 27.0 306 126-465 124-448 (591)
5 4fmz_A Internalin; leucine ric 99.9 1E-24 3.6E-29 237.4 20.0 308 487-842 37-344 (347)
6 4fmz_A Internalin; leucine ric 99.9 5.5E-23 1.9E-27 223.7 23.6 297 476-819 48-344 (347)
7 1o6v_A Internalin A; bacterial 99.9 1.1E-22 3.9E-27 230.4 24.6 312 478-841 52-385 (466)
8 2id5_A Lingo-1, leucine rich r 99.9 5.9E-23 2E-27 233.8 21.3 290 494-841 32-330 (477)
9 4ecn_A Leucine-rich repeat pro 99.9 1.7E-23 5.8E-28 249.9 16.1 327 488-842 442-838 (876)
10 2z81_A CD282 antigen, TOLL-lik 99.9 6.6E-23 2.3E-27 238.0 20.4 164 483-651 16-183 (549)
11 3v47_A TOLL-like receptor 5B a 99.9 2.4E-22 8.3E-27 227.4 23.6 338 476-842 14-406 (455)
12 3o6n_A APL1; leucine-rich repe 99.9 6.3E-23 2.2E-27 227.0 18.4 304 491-842 42-350 (390)
13 1o6v_A Internalin A; bacterial 99.9 1.2E-22 4.1E-27 230.2 20.9 314 491-842 43-364 (466)
14 4eco_A Uncharacterized protein 99.9 1.5E-23 5.1E-28 246.4 13.2 327 489-842 201-598 (636)
15 4eco_A Uncharacterized protein 99.9 4.6E-23 1.6E-27 242.3 14.8 236 512-763 202-472 (636)
16 4ecn_A Leucine-rich repeat pro 99.9 1E-22 3.6E-27 243.1 17.2 229 512-757 444-707 (876)
17 2z63_A TOLL-like receptor 4, v 99.9 3.5E-22 1.2E-26 233.1 20.7 162 666-842 347-529 (570)
18 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-22 6.3E-27 237.2 18.3 343 477-842 16-435 (606)
19 3oja_B Anopheles plasmodium-re 99.9 2.3E-22 7.7E-27 235.1 18.2 303 492-842 49-356 (597)
20 3rgz_A Protein brassinosteroid 99.9 3E-22 1E-26 241.0 17.4 323 490-841 196-548 (768)
21 3t6q_A CD180 antigen; protein- 99.9 1.1E-21 3.6E-26 230.7 21.6 347 476-841 16-435 (606)
22 3t6q_A CD180 antigen; protein- 99.9 1.2E-21 4.1E-26 230.2 21.4 136 489-625 52-192 (606)
23 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-21 6.2E-26 224.2 21.3 343 476-842 4-479 (520)
24 2id5_A Lingo-1, leucine rich r 99.9 1.9E-21 6.5E-26 221.4 21.1 276 489-795 51-331 (477)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-20 3.7E-25 219.6 27.1 346 475-842 34-508 (562)
26 2z7x_B TOLL-like receptor 1, v 99.9 6.9E-21 2.4E-25 219.3 24.7 144 497-652 3-150 (520)
27 3bz5_A Internalin-J, INLJ; leu 99.9 2E-21 6.7E-26 218.4 19.5 307 486-840 34-348 (457)
28 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-21 5.2E-26 229.4 18.8 157 489-649 51-238 (606)
29 3o6n_A APL1; leucine-rich repe 99.9 3.2E-21 1.1E-25 213.3 19.5 295 476-819 49-350 (390)
30 3rgz_A Protein brassinosteroid 99.9 9.1E-22 3.1E-26 236.8 15.6 284 540-844 394-740 (768)
31 3oja_B Anopheles plasmodium-re 99.9 2.2E-21 7.5E-26 226.7 18.3 281 490-819 71-356 (597)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-20 4.2E-25 219.1 24.4 118 477-599 57-181 (562)
33 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-21 6.3E-26 210.1 15.4 296 494-819 33-331 (332)
34 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-20 7.7E-25 227.0 25.4 334 475-841 7-391 (844)
35 3v47_A TOLL-like receptor 5B a 99.8 6.6E-21 2.3E-25 215.6 17.4 311 488-825 48-412 (455)
36 1xku_A Decorin; proteoglycan, 99.8 1.6E-20 5.4E-25 202.7 19.1 295 494-818 31-329 (330)
37 2z81_A CD282 antigen, TOLL-lik 99.8 2.4E-20 8.3E-25 216.4 20.9 134 489-623 45-183 (549)
38 3j0a_A TOLL-like receptor 5; m 99.8 3.6E-20 1.2E-24 225.3 21.6 322 497-842 7-373 (844)
39 1ziw_A TOLL-like receptor 3; i 99.8 5E-20 1.7E-24 219.5 22.1 169 476-651 8-182 (680)
40 1ziw_A TOLL-like receptor 3; i 99.8 4.9E-20 1.7E-24 219.6 20.4 247 497-758 7-283 (680)
41 3bz5_A Internalin-J, INLJ; leu 99.8 4.8E-20 1.6E-24 207.1 18.6 308 477-824 47-354 (457)
42 4fcg_A Uncharacterized protein 99.8 1.8E-20 6E-25 201.4 14.0 91 514-606 79-169 (328)
43 2z63_A TOLL-like receptor 4, v 99.8 3.6E-20 1.2E-24 216.0 17.3 116 687-825 417-535 (570)
44 1ogq_A PGIP-2, polygalacturona 99.8 2.3E-20 8E-25 199.3 11.3 129 495-624 51-186 (313)
45 4fcg_A Uncharacterized protein 99.8 3.5E-19 1.2E-23 191.3 19.1 238 538-850 79-318 (328)
46 2ft3_A Biglycan; proteoglycan, 99.8 3E-19 1E-23 192.7 15.2 285 517-842 34-331 (332)
47 1ogq_A PGIP-2, polygalacturona 99.8 2.2E-19 7.4E-24 191.7 13.6 255 516-826 50-309 (313)
48 1xku_A Decorin; proteoglycan, 99.8 1.3E-18 4.6E-23 187.5 19.4 263 517-819 32-304 (330)
49 2z80_A TOLL-like receptor 2, v 99.8 8.9E-19 3E-23 190.8 17.5 150 497-651 34-185 (353)
50 2z80_A TOLL-like receptor 2, v 99.8 9.7E-19 3.3E-23 190.5 16.5 262 480-758 39-312 (353)
51 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-18 7.1E-23 203.9 19.7 143 479-625 38-186 (635)
52 3g06_A SSPH2 (leucine-rich rep 99.8 5E-18 1.7E-22 196.3 20.3 133 494-652 61-193 (622)
53 4g8a_A TOLL-like receptor 4; l 99.8 2.6E-18 8.8E-23 203.1 18.3 114 489-603 71-188 (635)
54 1jl5_A Outer protein YOPM; leu 99.8 1.2E-17 4.2E-22 187.3 19.1 157 494-676 111-267 (454)
55 1jl5_A Outer protein YOPM; leu 99.8 1.6E-17 5.5E-22 186.3 19.8 116 495-624 92-207 (454)
56 2z66_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 182.3 13.2 243 498-795 11-259 (306)
57 3zyi_A Leucine-rich repeat-con 99.7 2.6E-17 9E-22 185.5 19.6 241 497-819 57-301 (452)
58 3zyi_A Leucine-rich repeat-con 99.7 4.9E-18 1.7E-22 191.5 13.6 238 477-758 59-301 (452)
59 3ogk_B Coronatine-insensitive 99.7 1.9E-18 6.6E-23 202.3 10.1 251 492-758 162-447 (592)
60 3zyj_A Leucine-rich repeat-con 99.7 4.9E-18 1.7E-22 190.7 13.0 222 494-758 64-290 (440)
61 3zyj_A Leucine-rich repeat-con 99.7 4.6E-17 1.6E-21 182.8 20.7 241 497-819 46-290 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.7 4.1E-19 1.4E-23 190.1 2.1 262 496-824 12-278 (317)
63 3o53_A Protein LRIM1, AGAP0063 99.7 6.7E-19 2.3E-23 188.4 3.2 266 516-846 10-277 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.7 7.7E-17 2.6E-21 186.4 20.7 255 495-819 41-295 (622)
65 1wwl_A Monocyte differentiatio 99.7 1.6E-18 5.4E-23 185.1 4.7 157 494-657 43-218 (312)
66 1ozn_A Reticulon 4 receptor; N 99.7 7.7E-17 2.6E-21 169.7 16.5 219 497-758 14-236 (285)
67 2z66_A Variable lymphocyte rec 99.7 4.5E-17 1.5E-21 173.5 13.6 239 477-758 12-259 (306)
68 3ogk_B Coronatine-insensitive 99.7 5.3E-17 1.8E-21 190.1 12.0 309 491-824 189-528 (592)
69 1ozn_A Reticulon 4 receptor; N 99.7 8.9E-17 3E-21 169.2 12.4 215 479-735 18-236 (285)
70 3oja_A Leucine-rich immune mol 99.7 3E-17 1E-21 186.0 9.0 236 514-816 32-270 (487)
71 1h6u_A Internalin H; cell adhe 99.7 7.3E-16 2.5E-20 163.9 18.6 127 490-624 37-163 (308)
72 1z7x_W Ribonuclease inhibitor; 99.7 2.7E-17 9.2E-22 186.2 7.0 315 491-823 53-412 (461)
73 1z7x_W Ribonuclease inhibitor; 99.7 2.3E-17 8E-22 186.7 5.6 339 495-842 4-409 (461)
74 2p1m_B Transport inhibitor res 99.7 3E-17 1E-21 192.2 6.1 249 492-756 154-441 (594)
75 3oja_A Leucine-rich immune mol 99.7 2.6E-17 8.9E-22 186.6 4.7 240 492-797 32-275 (487)
76 2ast_B S-phase kinase-associat 99.6 2.2E-16 7.6E-21 170.6 9.3 149 496-650 49-205 (336)
77 2qen_A Walker-type ATPase; unk 99.6 8E-15 2.7E-19 159.3 21.6 293 126-463 12-349 (350)
78 1wwl_A Monocyte differentiatio 99.6 8.3E-17 2.8E-21 171.7 5.2 246 513-818 40-306 (312)
79 2xwt_C Thyrotropin receptor; s 99.6 9.4E-16 3.2E-20 156.8 12.2 112 506-622 23-140 (239)
80 1p9a_G Platelet glycoprotein I 99.6 1.6E-15 5.6E-20 159.5 13.9 132 490-625 6-137 (290)
81 2z62_A TOLL-like receptor 4, v 99.6 2.4E-15 8.2E-20 157.4 15.1 128 495-624 29-161 (276)
82 2z62_A TOLL-like receptor 4, v 99.6 2.2E-15 7.6E-20 157.7 14.8 215 503-735 16-235 (276)
83 3rfs_A Internalin B, repeat mo 99.6 6E-16 2.1E-20 161.5 10.3 135 488-625 35-170 (272)
84 2ast_B S-phase kinase-associat 99.6 9.2E-16 3.1E-20 165.7 12.0 250 517-825 48-309 (336)
85 1h6u_A Internalin H; cell adhe 99.6 3.5E-15 1.2E-19 158.6 16.0 200 504-758 29-228 (308)
86 1w5s_A Origin recognition comp 99.6 5E-15 1.7E-19 164.8 17.5 296 126-439 22-372 (412)
87 2fna_A Conserved hypothetical 99.6 3.9E-14 1.3E-18 154.3 23.8 289 126-462 13-356 (357)
88 2o6q_A Variable lymphocyte rec 99.6 4.1E-15 1.4E-19 155.0 15.1 128 495-625 17-146 (270)
89 4ay9_X Follicle-stimulating ho 99.6 1.1E-15 3.8E-20 165.8 10.2 238 499-756 14-255 (350)
90 2o6q_A Variable lymphocyte rec 99.6 8.4E-15 2.9E-19 152.6 16.0 147 477-625 21-170 (270)
91 2ca6_A RAN GTPase-activating p 99.6 7.1E-16 2.4E-20 170.0 7.5 140 513-653 29-200 (386)
92 2p1m_B Transport inhibitor res 99.6 6.7E-16 2.3E-20 180.8 6.6 323 492-842 103-467 (594)
93 3rfs_A Internalin B, repeat mo 99.6 6.6E-15 2.2E-19 153.6 13.5 170 477-651 46-216 (272)
94 2xwt_C Thyrotropin receptor; s 99.6 8.8E-15 3E-19 149.5 13.5 84 541-624 32-117 (239)
95 3goz_A Leucine-rich repeat-con 99.6 1.3E-14 4.5E-19 158.2 13.9 261 500-795 4-295 (362)
96 1p9a_G Platelet glycoprotein I 99.5 1.5E-14 5.3E-19 152.0 12.5 200 512-758 6-206 (290)
97 4ezg_A Putative uncharacterize 99.5 1.7E-14 5.8E-19 142.5 11.9 153 491-653 41-194 (197)
98 4glp_A Monocyte differentiatio 99.5 1E-14 3.5E-19 155.4 10.7 139 517-656 65-213 (310)
99 4ay9_X Follicle-stimulating ho 99.5 1.2E-14 4.3E-19 157.5 11.3 237 519-816 12-254 (350)
100 1h6t_A Internalin B; cell adhe 99.5 3.2E-14 1.1E-18 149.7 12.9 173 488-703 40-212 (291)
101 3m19_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 145.7 13.4 170 477-652 19-191 (251)
102 3m19_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 145.0 13.6 129 495-625 15-144 (251)
103 2ca6_A RAN GTPase-activating p 99.5 1.2E-14 4.2E-19 160.0 8.6 163 490-653 28-229 (386)
104 1m9s_A Internalin B; cell inva 99.5 3.9E-14 1.3E-18 163.6 11.7 111 506-624 33-143 (605)
105 3goz_A Leucine-rich repeat-con 99.5 2.9E-14 9.8E-19 155.5 8.0 259 520-819 2-295 (362)
106 4ezg_A Putative uncharacterize 99.5 2.2E-13 7.5E-18 134.4 13.5 146 476-625 48-194 (197)
107 1m9s_A Internalin B; cell inva 99.5 9.4E-14 3.2E-18 160.4 11.9 172 487-676 36-207 (605)
108 3e6j_A Variable lymphocyte rec 99.5 2.9E-13 9.9E-18 137.0 14.1 131 494-625 40-172 (229)
109 1h6t_A Internalin B; cell adhe 99.5 6E-13 2.1E-17 139.9 15.8 163 477-653 51-213 (291)
110 1xeu_A Internalin C; cellular 99.4 4.5E-13 1.5E-17 138.6 13.6 154 485-653 32-185 (263)
111 2v9t_B SLIT homolog 2 protein 99.4 2E-13 6.9E-18 137.1 10.6 148 498-651 15-163 (220)
112 4glp_A Monocyte differentiatio 99.4 8E-14 2.7E-18 148.4 6.8 199 494-735 91-305 (310)
113 2v9t_B SLIT homolog 2 protein 99.4 1.2E-12 4.1E-17 131.4 14.0 146 477-625 16-165 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.2E-17 131.3 12.9 127 496-623 34-164 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 6.2E-13 2.1E-17 133.5 10.5 150 497-652 14-165 (220)
116 2o6s_A Variable lymphocyte rec 99.4 2.1E-12 7E-17 128.7 14.2 131 494-625 28-161 (208)
117 2qby_B CDC6 homolog 3, cell di 99.4 2.1E-11 7.1E-16 134.0 23.4 292 126-439 20-340 (384)
118 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 132.7 11.2 149 496-652 21-171 (229)
119 2ell_A Acidic leucine-rich nuc 99.4 9.6E-13 3.3E-17 126.2 9.7 129 494-625 24-160 (168)
120 2je0_A Acidic leucine-rich nuc 99.4 1.2E-12 4E-17 122.8 9.7 124 494-620 17-148 (149)
121 2xot_A Amphoterin-induced prot 99.4 1.7E-12 5.8E-17 141.2 12.3 170 477-652 23-201 (361)
122 1a9n_A U2A', U2A'; complex (nu 99.4 1.5E-12 5.1E-17 125.8 10.0 128 492-623 17-151 (176)
123 2v1u_A Cell division control p 99.4 1.5E-11 5.1E-16 135.3 19.4 290 126-439 19-352 (387)
124 2o6s_A Variable lymphocyte rec 99.4 2.6E-12 8.9E-17 127.9 11.4 147 498-650 11-158 (208)
125 1xeu_A Internalin C; cellular 99.3 2.3E-13 7.7E-18 140.8 3.4 168 493-704 18-185 (263)
126 1fnn_A CDC6P, cell division co 99.3 1.1E-10 3.9E-15 128.3 23.8 290 126-439 17-352 (389)
127 2qby_A CDC6 homolog 1, cell di 99.3 1.6E-11 5.3E-16 135.1 16.6 292 126-438 20-348 (386)
128 3cvr_A Invasion plasmid antige 99.3 1.1E-11 3.8E-16 141.4 14.9 113 495-624 60-172 (571)
129 2xot_A Amphoterin-induced prot 99.3 3.1E-12 1.1E-16 139.1 9.3 155 497-654 21-177 (361)
130 3cvr_A Invasion plasmid antige 99.3 6.1E-12 2.1E-16 143.6 10.7 131 476-625 63-193 (571)
131 2wfh_A SLIT homolog 2 protein 99.3 2.2E-11 7.6E-16 119.3 12.4 126 497-625 13-139 (193)
132 2o6r_A Variable lymphocyte rec 99.3 2.5E-11 8.5E-16 117.3 12.5 129 496-626 9-138 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-11 3.9E-16 119.6 9.7 143 507-654 10-154 (176)
134 1w8a_A SLIT protein; signaling 99.3 1.5E-11 5.2E-16 120.5 10.7 128 497-626 11-140 (192)
135 2ell_A Acidic leucine-rich nuc 99.2 1.6E-11 5.6E-16 117.5 10.1 135 513-652 21-159 (168)
136 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.8E-16 115.3 7.6 130 513-647 14-147 (149)
137 1njg_A DNA polymerase III subu 99.2 1.4E-10 4.8E-15 118.6 15.1 197 126-333 23-231 (250)
138 4b8c_D Glucose-repressible alc 99.2 1.6E-11 5.5E-16 145.5 7.6 109 513-625 221-329 (727)
139 1dce_A Protein (RAB geranylger 99.2 8.9E-11 3E-15 134.7 11.7 119 496-618 443-566 (567)
140 1dce_A Protein (RAB geranylger 99.1 1.2E-10 4.2E-15 133.6 11.5 137 499-646 428-566 (567)
141 2chg_A Replication factor C sm 99.1 4.1E-10 1.4E-14 113.2 13.9 183 126-330 17-204 (226)
142 4b8c_D Glucose-repressible alc 99.1 8.4E-11 2.9E-15 139.3 9.1 134 489-625 219-354 (727)
143 2wfh_A SLIT homolog 2 protein 99.1 4.3E-10 1.5E-14 110.1 12.3 121 477-598 15-137 (193)
144 1w8a_A SLIT protein; signaling 99.1 4.5E-10 1.5E-14 109.9 12.0 122 477-599 13-138 (192)
145 1ds9_A Outer arm dynein; leuci 99.1 8.5E-12 2.9E-16 123.0 -1.0 108 536-651 44-151 (198)
146 1ds9_A Outer arm dynein; leuci 99.1 2.9E-11 9.8E-16 119.2 2.7 126 495-625 24-153 (198)
147 2o6r_A Variable lymphocyte rec 99.1 6.5E-10 2.2E-14 107.3 12.1 119 480-599 15-136 (177)
148 3sb4_A Hypothetical leucine ri 99.0 7.1E-10 2.4E-14 118.8 11.3 283 493-814 24-327 (329)
149 2r9u_A Variable lymphocyte rec 99.0 7.1E-10 2.4E-14 106.4 10.1 98 498-597 16-115 (174)
150 2r9u_A Variable lymphocyte rec 99.0 6.7E-10 2.3E-14 106.6 9.9 105 518-626 14-119 (174)
151 3g39_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 105.9 9.8 102 519-624 12-114 (170)
152 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 104.6 10.3 102 496-598 11-113 (170)
153 3qfl_A MLA10; coiled-coil, (CC 99.0 2.4E-09 8.2E-14 93.6 10.1 63 8-70 20-83 (115)
154 1sxj_B Activator 1 37 kDa subu 98.9 2.8E-09 9.5E-14 113.9 11.9 184 126-331 21-211 (323)
155 1hqc_A RUVB; extended AAA-ATPa 98.9 4.2E-08 1.4E-12 104.7 19.3 271 126-437 12-324 (324)
156 3sb4_A Hypothetical leucine ri 98.8 2.1E-08 7.2E-13 107.2 11.3 263 493-791 48-328 (329)
157 1iqp_A RFCS; clamp loader, ext 98.8 1.7E-08 5.7E-13 108.0 10.4 186 126-333 25-215 (327)
158 4fdw_A Leucine rich hypothetic 98.7 3.3E-07 1.1E-11 100.2 19.0 102 513-620 133-234 (401)
159 2ifg_A High affinity nerve gro 98.7 3E-08 1E-12 107.0 10.3 99 499-597 13-113 (347)
160 3un9_A NLR family member X1; l 98.7 7.5E-09 2.6E-13 112.2 4.2 157 495-653 73-252 (372)
161 3te6_A Regulatory protein SIR3 98.7 2.1E-07 7.1E-12 96.9 14.2 167 128-299 22-213 (318)
162 2ifg_A High affinity nerve gro 98.6 5.8E-08 2E-12 104.7 9.4 104 519-626 11-117 (347)
163 2chq_A Replication factor C sm 98.6 2.4E-07 8.1E-12 98.5 12.7 180 126-330 17-204 (319)
164 3un9_A NLR family member X1; l 98.6 2.6E-08 8.9E-13 107.9 4.7 137 515-653 71-224 (372)
165 1jr3_A DNA polymerase III subu 98.6 6E-07 2E-11 97.8 15.5 194 126-331 16-222 (373)
166 4fdw_A Leucine rich hypothetic 98.6 1.9E-06 6.5E-11 94.2 18.9 257 514-839 111-378 (401)
167 1jbk_A CLPB protein; beta barr 98.5 1.7E-07 5.7E-12 91.4 7.3 46 126-171 22-67 (195)
168 3bos_A Putative DNA replicatio 98.4 3.6E-07 1.2E-11 92.7 9.0 172 126-330 28-217 (242)
169 3h4m_A Proteasome-activating n 98.3 1.4E-06 4.8E-11 90.9 10.3 176 126-328 17-229 (285)
170 1d2n_A N-ethylmaleimide-sensit 98.3 4.3E-05 1.5E-09 78.8 20.4 196 126-352 33-264 (272)
171 1sxj_A Activator 1 95 kDa subu 98.3 5E-06 1.7E-10 94.2 14.4 187 126-330 39-253 (516)
172 2z4s_A Chromosomal replication 98.3 3.8E-06 1.3E-10 92.9 13.0 179 127-328 106-304 (440)
173 1sxj_D Activator 1 41 kDa subu 98.3 2.8E-06 9.7E-11 91.6 11.5 194 126-330 37-235 (353)
174 3pvs_A Replication-associated 98.3 1.5E-05 5E-10 88.0 17.0 176 126-330 26-215 (447)
175 3pfi_A Holliday junction ATP-d 98.3 8.5E-05 2.9E-09 79.3 22.7 171 126-330 29-227 (338)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.2 3.1E-05 1.1E-09 79.4 16.1 180 126-330 6-222 (262)
177 3e4g_A ATP synthase subunit S, 98.2 1.3E-06 4.5E-11 82.0 5.0 89 691-800 61-155 (176)
178 1sxj_E Activator 1 40 kDa subu 98.2 3E-06 1E-10 91.4 8.6 195 126-330 14-237 (354)
179 3syl_A Protein CBBX; photosynt 98.1 6.7E-06 2.3E-10 86.8 10.7 152 127-299 32-219 (309)
180 3uk6_A RUVB-like 2; hexameric 98.1 6.8E-05 2.3E-09 81.2 18.1 194 126-330 44-303 (368)
181 3u61_B DNA polymerase accessor 98.1 2.3E-05 7.8E-10 83.3 13.7 176 126-328 26-214 (324)
182 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00013 4.5E-09 77.0 19.4 178 126-331 12-224 (322)
183 4fs7_A Uncharacterized protein 98.1 1.3E-05 4.6E-10 87.6 11.9 302 490-839 67-374 (394)
184 2ra8_A Uncharacterized protein 98.1 8.3E-06 2.8E-10 87.4 9.8 59 534-595 166-227 (362)
185 2ra8_A Uncharacterized protein 98.1 1.2E-06 4E-11 94.1 3.1 136 513-651 169-318 (362)
186 3d8b_A Fidgetin-like protein 1 98.1 5.1E-05 1.7E-09 81.5 16.0 179 126-331 84-296 (357)
187 3e4g_A ATP synthase subunit S, 98.0 4.4E-06 1.5E-10 78.5 5.8 86 516-602 61-154 (176)
188 1a5t_A Delta prime, HOLB; zinc 98.0 6.3E-05 2.2E-09 80.0 15.2 171 132-330 8-205 (334)
189 3eie_A Vacuolar protein sortin 98.0 9.2E-05 3.1E-09 78.3 16.3 178 126-330 18-228 (322)
190 2p65_A Hypothetical protein PF 98.0 7.3E-06 2.5E-10 79.1 6.8 46 126-171 22-67 (187)
191 1l8q_A Chromosomal replication 98.0 5.1E-05 1.7E-09 80.5 13.6 174 126-325 11-203 (324)
192 1io0_A Tropomodulin; LRR prote 98.0 6.3E-06 2.2E-10 79.5 5.7 82 513-594 33-128 (185)
193 2qp9_X Vacuolar protein sortin 98.0 8.1E-05 2.8E-09 79.8 14.8 176 126-330 51-261 (355)
194 1sxj_C Activator 1 40 kDa subu 98.0 4.7E-05 1.6E-09 81.4 12.9 180 126-327 25-209 (340)
195 3vfd_A Spastin; ATPase, microt 97.9 0.00019 6.6E-09 78.0 17.5 179 126-330 115-326 (389)
196 2zan_A Vacuolar protein sortin 97.9 0.00032 1.1E-08 77.6 19.3 180 126-330 134-345 (444)
197 3rw6_A Nuclear RNA export fact 97.9 5E-06 1.7E-10 84.4 4.3 106 513-619 138-258 (267)
198 3b9p_A CG5977-PA, isoform A; A 97.9 0.00024 8.3E-09 74.2 17.5 176 126-330 21-233 (297)
199 4fs7_A Uncharacterized protein 97.9 0.00016 5.4E-09 79.1 15.8 126 511-647 66-192 (394)
200 4gt6_A Cell surface protein; l 97.9 0.00014 4.6E-09 79.6 15.0 103 512-619 83-189 (394)
201 3cf0_A Transitional endoplasmi 97.8 0.00028 9.7E-09 73.7 15.5 173 126-325 15-223 (301)
202 3pxg_A Negative regulator of g 97.8 0.00015 5E-09 80.9 13.6 150 126-299 180-340 (468)
203 2gno_A DNA polymerase III, gam 97.8 9.8E-05 3.4E-09 76.9 10.9 147 130-297 1-152 (305)
204 1in4_A RUVB, holliday junction 97.7 0.00058 2E-08 72.5 16.9 171 126-330 25-223 (334)
205 1io0_A Tropomodulin; LRR prote 97.7 3E-05 1E-09 74.7 6.2 118 535-654 31-165 (185)
206 2w58_A DNAI, primosome compone 97.7 5.3E-05 1.8E-09 74.2 7.2 120 126-266 25-158 (202)
207 4b4t_J 26S protease regulatory 97.6 0.0008 2.7E-08 71.8 15.9 171 126-323 148-354 (405)
208 1qvr_A CLPB protein; coiled co 97.6 0.00011 3.7E-09 88.6 9.9 154 126-297 170-345 (854)
209 2r62_A Cell division protease 97.6 0.00013 4.5E-09 75.0 9.1 151 126-299 11-198 (268)
210 3n70_A Transport activator; si 97.6 5.6E-05 1.9E-09 69.5 5.7 45 127-171 2-48 (145)
211 3ec2_A DNA replication protein 97.6 2.9E-05 9.9E-10 74.5 3.5 117 131-267 19-143 (180)
212 4b4t_L 26S protease subunit RP 97.6 0.0005 1.7E-08 74.6 13.1 171 126-323 181-387 (437)
213 3rw6_A Nuclear RNA export fact 97.5 0.00012 4.3E-09 74.1 7.5 79 514-594 168-258 (267)
214 3pxi_A Negative regulator of g 97.5 0.00054 1.9E-08 81.5 14.1 152 126-299 180-340 (758)
215 4b4t_H 26S protease regulatory 97.5 0.0015 5.2E-08 70.6 15.8 170 127-323 210-415 (467)
216 4gt6_A Cell surface protein; l 97.5 0.0013 4.3E-08 71.8 15.6 129 489-622 82-215 (394)
217 1lv7_A FTSH; alpha/beta domain 97.5 0.0018 6.2E-08 65.8 15.7 176 126-328 12-223 (257)
218 4b4t_I 26S protease regulatory 97.5 0.0019 6.6E-08 69.1 16.1 168 127-322 183-387 (437)
219 3hu3_A Transitional endoplasmi 97.5 0.00059 2E-08 75.9 12.7 177 126-329 204-414 (489)
220 1ofh_A ATP-dependent HSL prote 97.5 0.0007 2.4E-08 71.1 12.7 46 126-171 15-74 (310)
221 4b4t_K 26S protease regulatory 97.4 0.0019 6.6E-08 69.9 15.8 170 126-322 172-378 (428)
222 2ce7_A Cell division protein F 97.3 0.001 3.4E-08 73.4 12.2 171 126-323 16-221 (476)
223 4b4t_M 26S protease regulatory 97.3 0.0013 4.4E-08 71.3 12.8 169 126-322 181-386 (434)
224 4fcw_A Chaperone protein CLPB; 97.3 0.00069 2.4E-08 71.2 10.5 61 126-189 17-86 (311)
225 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0014 4.7E-08 78.1 14.4 154 126-297 186-362 (758)
226 2bjv_A PSP operon transcriptio 97.2 0.0007 2.4E-08 69.3 8.9 60 126-188 6-67 (265)
227 2c9o_A RUVB-like 1; hexameric 97.2 0.0029 1E-07 70.2 13.6 46 126-171 37-87 (456)
228 3t15_A Ribulose bisphosphate c 97.0 0.0066 2.3E-07 62.8 14.3 26 146-171 35-60 (293)
229 1ojl_A Transcriptional regulat 97.0 0.00087 3E-08 69.9 7.1 45 127-171 3-49 (304)
230 3pxi_A Negative regulator of g 97.0 0.00093 3.2E-08 79.5 7.8 60 126-188 491-559 (758)
231 2kjq_A DNAA-related protein; s 97.0 0.00035 1.2E-08 64.3 3.1 39 146-187 35-73 (149)
232 4h09_A Hypothetical leucine ri 96.9 0.0089 3E-07 64.6 14.2 121 493-621 45-167 (379)
233 3m6a_A ATP-dependent protease 96.8 0.0054 1.8E-07 69.5 12.2 45 127-171 82-132 (543)
234 3cf2_A TER ATPase, transitiona 96.8 0.0056 1.9E-07 71.6 12.3 170 127-323 205-407 (806)
235 2dhr_A FTSH; AAA+ protein, hex 96.8 0.015 5E-07 64.6 15.2 167 126-323 31-236 (499)
236 3co5_A Putative two-component 96.8 0.00084 2.9E-08 61.3 4.4 45 127-171 5-51 (143)
237 2x8a_A Nuclear valosin-contain 96.7 0.027 9.1E-07 57.5 15.3 149 126-298 10-192 (274)
238 1iy2_A ATP-dependent metallopr 96.6 0.014 4.7E-07 60.0 12.4 170 126-323 40-245 (278)
239 1ixz_A ATP-dependent metallopr 96.6 0.014 4.8E-07 59.0 12.0 46 126-171 16-73 (254)
240 3hr8_A Protein RECA; alpha and 96.5 0.025 8.6E-07 59.6 14.0 97 137-241 48-151 (356)
241 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0015 5E-08 67.3 3.8 69 147-240 123-193 (331)
242 1ypw_A Transitional endoplasmi 96.5 0.012 4E-07 70.0 12.1 151 126-300 204-388 (806)
243 2cvh_A DNA repair and recombin 96.4 0.0075 2.6E-07 59.4 8.4 88 146-240 19-116 (220)
244 1n0w_A DNA repair protein RAD5 96.3 0.011 3.9E-07 59.1 9.3 93 146-240 23-130 (243)
245 3lw7_A Adenylate kinase relate 96.2 0.038 1.3E-06 51.9 12.2 23 148-171 2-24 (179)
246 2z43_A DNA repair and recombin 96.1 0.02 7E-07 60.1 10.5 92 146-239 106-213 (324)
247 2qgz_A Helicase loader, putati 96.0 0.0045 1.5E-07 64.5 4.8 40 132-171 134-176 (308)
248 1v5w_A DMC1, meiotic recombina 96.0 0.026 8.9E-07 59.7 10.8 93 146-240 121-230 (343)
249 1u94_A RECA protein, recombina 96.0 0.015 5.2E-07 61.6 8.9 87 146-240 62-152 (356)
250 2b8t_A Thymidine kinase; deoxy 96.0 0.0026 8.9E-08 62.4 2.7 113 146-267 11-126 (223)
251 1jr3_D DNA polymerase III, del 96.0 0.046 1.6E-06 57.9 12.8 165 138-329 9-184 (343)
252 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0096 3.3E-07 70.8 7.8 46 126-171 458-512 (758)
253 3io5_A Recombination and repai 95.9 0.02 7E-07 58.5 9.0 87 149-241 30-123 (333)
254 1xp8_A RECA protein, recombina 95.9 0.021 7.2E-07 60.7 9.5 87 146-240 73-163 (366)
255 1qvr_A CLPB protein; coiled co 95.9 0.0096 3.3E-07 71.6 7.3 45 127-171 559-612 (854)
256 2zr9_A Protein RECA, recombina 95.8 0.024 8.2E-07 60.0 9.3 87 146-240 60-150 (349)
257 3dm5_A SRP54, signal recogniti 95.8 0.047 1.6E-06 59.2 11.6 26 146-171 99-124 (443)
258 1g5t_A COB(I)alamin adenosyltr 95.8 0.0049 1.7E-07 58.6 3.4 118 147-267 28-163 (196)
259 4h09_A Hypothetical leucine ri 95.7 0.024 8E-07 61.2 9.2 103 513-619 237-340 (379)
260 1rz3_A Hypothetical protein rb 95.5 0.013 4.3E-07 56.9 5.5 42 130-171 2-46 (201)
261 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.039 1.3E-06 54.7 8.9 47 147-198 23-69 (235)
262 2px0_A Flagellar biosynthesis 95.4 0.044 1.5E-06 56.5 9.3 86 146-237 104-190 (296)
263 2i1q_A DNA repair and recombin 95.4 0.03 1E-06 58.8 8.1 92 146-239 97-214 (322)
264 2xxa_A Signal recognition part 95.2 0.096 3.3E-06 57.0 11.7 91 146-238 99-192 (433)
265 3c8u_A Fructokinase; YP_612366 95.1 0.017 5.8E-07 56.3 4.9 39 133-171 6-46 (208)
266 3ice_A Transcription terminati 95.1 0.079 2.7E-06 55.7 9.9 53 137-190 163-216 (422)
267 3lda_A DNA repair protein RAD5 95.1 0.093 3.2E-06 56.4 11.0 93 146-239 177-283 (400)
268 2ck3_D ATP synthase subunit be 94.9 0.079 2.7E-06 57.4 9.8 100 138-240 143-264 (482)
269 3kb2_A SPBC2 prophage-derived 94.9 0.014 4.8E-07 54.8 3.6 24 148-171 2-25 (173)
270 2orw_A Thymidine kinase; TMTK, 94.9 0.0021 7.2E-08 61.4 -2.4 24 148-171 4-27 (184)
271 3e70_C DPA, signal recognition 94.9 0.13 4.5E-06 53.6 11.1 58 145-205 127-185 (328)
272 1j8m_F SRP54, signal recogniti 94.9 0.11 3.8E-06 53.4 10.4 89 147-238 98-189 (297)
273 1qhx_A CPT, protein (chloramph 94.9 0.015 5.1E-07 55.0 3.5 24 148-171 4-27 (178)
274 1vma_A Cell division protein F 94.7 0.096 3.3E-06 54.1 9.5 90 146-239 103-196 (306)
275 3kl4_A SRP54, signal recogniti 94.7 0.14 4.9E-06 55.3 11.2 58 146-206 96-154 (433)
276 2ffh_A Protein (FFH); SRP54, s 94.7 0.17 5.8E-06 54.6 11.7 89 146-238 97-189 (425)
277 2ga8_A Hypothetical 39.9 kDa p 94.6 0.034 1.2E-06 58.1 5.7 43 129-171 2-48 (359)
278 1pzn_A RAD51, DNA repair and r 94.6 0.061 2.1E-06 56.9 7.9 93 146-240 130-242 (349)
279 3vaa_A Shikimate kinase, SK; s 94.6 0.02 6.9E-07 55.3 3.8 26 146-171 24-49 (199)
280 2hf9_A Probable hydrogenase ni 94.6 0.029 1E-06 55.3 5.1 39 133-171 24-62 (226)
281 1pgv_A TMD-1, tropomodulin TMD 94.5 0.062 2.1E-06 51.2 6.9 21 632-652 149-169 (197)
282 2r44_A Uncharacterized protein 94.5 0.022 7.4E-07 60.2 4.2 44 126-171 27-70 (331)
283 3bh0_A DNAB-like replicative h 94.5 0.12 4.3E-06 53.7 9.7 52 146-202 67-118 (315)
284 2yvu_A Probable adenylyl-sulfa 94.4 0.024 8.3E-07 54.0 3.9 26 146-171 12-37 (186)
285 3trf_A Shikimate kinase, SK; a 94.4 0.022 7.6E-07 54.2 3.6 25 147-171 5-29 (185)
286 1fx0_B ATP synthase beta chain 94.4 0.11 3.9E-06 56.4 9.4 101 138-240 155-277 (498)
287 1sky_E F1-ATPase, F1-ATP synth 94.4 0.071 2.4E-06 57.9 7.8 91 148-240 152-256 (473)
288 2dr3_A UPF0273 protein PH0284; 94.3 0.1 3.5E-06 52.1 8.5 40 146-188 22-61 (247)
289 1kag_A SKI, shikimate kinase I 94.3 0.02 6.8E-07 53.8 2.9 24 148-171 5-28 (173)
290 1ly1_A Polynucleotide kinase; 94.3 0.024 8.1E-07 53.7 3.5 22 148-169 3-24 (181)
291 1kgd_A CASK, peripheral plasma 94.3 0.024 8.2E-07 53.8 3.5 24 148-171 6-29 (180)
292 1zp6_A Hypothetical protein AT 94.3 0.025 8.5E-07 54.2 3.6 26 146-171 8-33 (191)
293 3hws_A ATP-dependent CLP prote 94.2 0.041 1.4E-06 58.8 5.6 44 128-171 17-75 (363)
294 2wsm_A Hydrogenase expression/ 94.2 0.03 1E-06 55.1 4.1 42 130-171 13-54 (221)
295 3uie_A Adenylyl-sulfate kinase 94.2 0.03 1E-06 54.1 4.0 27 145-171 23-49 (200)
296 3t61_A Gluconokinase; PSI-biol 94.1 0.024 8.1E-07 55.0 3.1 25 147-171 18-42 (202)
297 1nks_A Adenylate kinase; therm 94.1 0.028 9.5E-07 53.9 3.5 24 148-171 2-25 (194)
298 4eun_A Thermoresistant glucoki 94.1 0.031 1.1E-06 54.1 3.8 27 145-171 27-53 (200)
299 1kht_A Adenylate kinase; phosp 94.0 0.03 1E-06 53.5 3.6 24 148-171 4-27 (192)
300 2rhm_A Putative kinase; P-loop 94.0 0.033 1.1E-06 53.3 3.9 25 147-171 5-29 (193)
301 1odf_A YGR205W, hypothetical 3 94.0 0.045 1.5E-06 56.2 5.0 27 145-171 29-55 (290)
302 1um8_A ATP-dependent CLP prote 94.0 0.052 1.8E-06 58.4 5.8 45 127-171 22-96 (376)
303 3iij_A Coilin-interacting nucl 93.9 0.029 9.8E-07 53.2 3.3 25 147-171 11-35 (180)
304 4a1f_A DNAB helicase, replicat 93.9 0.4 1.4E-05 50.0 12.1 52 146-202 45-96 (338)
305 1ex7_A Guanylate kinase; subst 93.9 0.022 7.6E-07 54.0 2.3 24 148-171 2-25 (186)
306 3nbx_X ATPase RAVA; AAA+ ATPas 93.8 0.04 1.4E-06 61.1 4.6 43 127-171 23-65 (500)
307 1via_A Shikimate kinase; struc 93.8 0.029 9.9E-07 52.9 3.0 24 148-171 5-28 (175)
308 1knq_A Gluconate kinase; ALFA/ 93.8 0.035 1.2E-06 52.3 3.6 25 147-171 8-32 (175)
309 3rfe_A Platelet glycoprotein I 93.8 0.095 3.2E-06 46.5 6.1 34 517-550 32-65 (130)
310 2jaq_A Deoxyguanosine kinase; 93.8 0.035 1.2E-06 53.7 3.6 23 149-171 2-24 (205)
311 2bbw_A Adenylate kinase 4, AK4 93.8 0.037 1.3E-06 55.6 3.8 26 146-171 26-51 (246)
312 2c95_A Adenylate kinase 1; tra 93.7 0.038 1.3E-06 53.1 3.8 26 146-171 8-33 (196)
313 2ze6_A Isopentenyl transferase 93.7 0.034 1.2E-06 56.0 3.6 24 148-171 2-25 (253)
314 1zuh_A Shikimate kinase; alpha 93.7 0.037 1.3E-06 51.7 3.6 25 147-171 7-31 (168)
315 3tau_A Guanylate kinase, GMP k 93.7 0.039 1.3E-06 53.7 3.9 26 146-171 7-32 (208)
316 3rfe_A Platelet glycoprotein I 93.7 0.07 2.4E-06 47.3 5.2 53 568-623 12-66 (130)
317 2j37_W Signal recognition part 93.7 0.37 1.3E-05 53.3 12.0 26 146-171 100-125 (504)
318 1y63_A LMAJ004144AAA protein; 93.7 0.04 1.4E-06 52.4 3.8 25 146-170 9-33 (184)
319 3tr0_A Guanylate kinase, GMP k 93.7 0.035 1.2E-06 53.8 3.5 25 147-171 7-31 (205)
320 1g8p_A Magnesium-chelatase 38 93.7 0.027 9.2E-07 59.9 2.8 46 126-171 24-69 (350)
321 2qor_A Guanylate kinase; phosp 93.7 0.033 1.1E-06 54.1 3.2 26 146-171 11-36 (204)
322 1pgv_A TMD-1, tropomodulin TMD 93.6 0.14 4.7E-06 48.8 7.3 39 610-648 96-134 (197)
323 2bdt_A BH3686; alpha-beta prot 93.6 0.038 1.3E-06 52.8 3.5 23 148-170 3-25 (189)
324 1tev_A UMP-CMP kinase; ploop, 93.6 0.04 1.4E-06 52.8 3.6 25 147-171 3-27 (196)
325 1ukz_A Uridylate kinase; trans 93.6 0.043 1.5E-06 53.1 3.9 26 146-171 14-39 (203)
326 2iyv_A Shikimate kinase, SK; t 93.5 0.032 1.1E-06 53.1 2.8 24 148-171 3-26 (184)
327 3a00_A Guanylate kinase, GMP k 93.5 0.034 1.2E-06 53.1 2.9 24 148-171 2-25 (186)
328 1ye8_A Protein THEP1, hypothet 93.5 0.041 1.4E-06 51.9 3.5 23 149-171 2-24 (178)
329 3umf_A Adenylate kinase; rossm 93.5 0.044 1.5E-06 53.4 3.7 27 145-171 27-53 (217)
330 1uf9_A TT1252 protein; P-loop, 93.5 0.045 1.6E-06 52.9 3.9 26 145-170 6-31 (203)
331 2if2_A Dephospho-COA kinase; a 93.5 0.04 1.4E-06 53.4 3.5 22 148-169 2-23 (204)
332 1tue_A Replication protein E1; 93.5 0.059 2E-06 51.4 4.4 37 135-171 45-82 (212)
333 3fwy_A Light-independent proto 93.5 0.041 1.4E-06 57.2 3.6 41 145-188 46-86 (314)
334 2bwj_A Adenylate kinase 5; pho 93.4 0.043 1.5E-06 52.8 3.6 25 147-171 12-36 (199)
335 1cke_A CK, MSSA, protein (cyti 93.4 0.042 1.4E-06 54.3 3.5 24 148-171 6-29 (227)
336 1e6c_A Shikimate kinase; phosp 93.4 0.038 1.3E-06 51.9 3.0 24 148-171 3-26 (173)
337 2j41_A Guanylate kinase; GMP, 93.4 0.049 1.7E-06 52.8 3.9 25 147-171 6-30 (207)
338 3cm0_A Adenylate kinase; ATP-b 93.3 0.046 1.6E-06 52.0 3.5 24 148-171 5-28 (186)
339 3asz_A Uridine kinase; cytidin 93.3 0.047 1.6E-06 53.2 3.7 26 146-171 5-30 (211)
340 3cmu_A Protein RECA, recombina 93.3 0.18 6.1E-06 64.5 9.5 86 146-239 1426-1515(2050)
341 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.049 1.7E-06 55.1 3.8 25 147-171 4-28 (260)
342 1gvn_B Zeta; postsegregational 93.2 0.071 2.4E-06 54.7 5.0 26 146-171 32-57 (287)
343 2plr_A DTMP kinase, probable t 93.2 0.051 1.8E-06 52.9 3.8 24 148-171 5-28 (213)
344 2vli_A Antibiotic resistance p 93.2 0.034 1.2E-06 52.7 2.4 25 147-171 5-29 (183)
345 2qt1_A Nicotinamide riboside k 93.2 0.05 1.7E-06 52.8 3.7 26 146-171 20-45 (207)
346 4gp7_A Metallophosphoesterase; 93.2 0.038 1.3E-06 51.9 2.6 23 146-168 8-30 (171)
347 1jjv_A Dephospho-COA kinase; P 93.2 0.046 1.6E-06 53.1 3.3 22 148-169 3-24 (206)
348 2pt5_A Shikimate kinase, SK; a 93.2 0.051 1.8E-06 50.6 3.5 23 149-171 2-24 (168)
349 3cf2_A TER ATPase, transitiona 93.2 0.39 1.3E-05 56.2 11.5 92 126-240 477-581 (806)
350 1lvg_A Guanylate kinase, GMP k 93.2 0.041 1.4E-06 53.1 2.9 24 148-171 5-28 (198)
351 3ney_A 55 kDa erythrocyte memb 93.2 0.055 1.9E-06 51.8 3.7 26 146-171 18-43 (197)
352 3l0o_A Transcription terminati 93.1 0.39 1.3E-05 50.4 10.3 53 137-190 164-217 (427)
353 2cdn_A Adenylate kinase; phosp 93.1 0.051 1.7E-06 52.5 3.5 26 146-171 19-44 (201)
354 1xjc_A MOBB protein homolog; s 93.1 0.057 2E-06 50.1 3.7 26 146-171 3-28 (169)
355 1qf9_A UMP/CMP kinase, protein 93.1 0.052 1.8E-06 51.9 3.6 25 147-171 6-30 (194)
356 1g41_A Heat shock protein HSLU 93.1 0.062 2.1E-06 58.3 4.4 46 126-171 15-74 (444)
357 2pbr_A DTMP kinase, thymidylat 93.1 0.054 1.8E-06 51.8 3.6 23 149-171 2-24 (195)
358 3tlx_A Adenylate kinase 2; str 93.1 0.089 3E-06 52.6 5.3 27 145-171 27-53 (243)
359 2grj_A Dephospho-COA kinase; T 93.0 0.055 1.9E-06 51.7 3.5 26 146-171 11-36 (192)
360 1ls1_A Signal recognition part 93.0 0.28 9.5E-06 50.4 9.0 90 146-238 97-189 (295)
361 2wwf_A Thymidilate kinase, put 92.9 0.062 2.1E-06 52.3 3.8 25 147-171 10-34 (212)
362 1zd8_A GTP:AMP phosphotransfer 92.9 0.057 2E-06 53.3 3.6 25 147-171 7-31 (227)
363 1zu4_A FTSY; GTPase, signal re 92.8 0.2 6.8E-06 52.1 7.7 26 146-171 104-129 (320)
364 1nn5_A Similar to deoxythymidy 92.8 0.064 2.2E-06 52.3 3.8 25 147-171 9-33 (215)
365 1aky_A Adenylate kinase; ATP:A 92.8 0.065 2.2E-06 52.6 3.8 25 147-171 4-28 (220)
366 2yhs_A FTSY, cell division pro 92.8 0.29 9.9E-06 53.5 9.1 26 146-171 292-317 (503)
367 3fb4_A Adenylate kinase; psych 92.7 0.062 2.1E-06 52.5 3.6 23 149-171 2-24 (216)
368 3tqc_A Pantothenate kinase; bi 92.7 0.097 3.3E-06 54.3 5.0 43 129-171 70-116 (321)
369 1znw_A Guanylate kinase, GMP k 92.7 0.064 2.2E-06 52.1 3.5 26 146-171 19-44 (207)
370 1zak_A Adenylate kinase; ATP:A 92.7 0.061 2.1E-06 52.9 3.4 26 146-171 4-29 (222)
371 4a74_A DNA repair and recombin 92.7 0.21 7.2E-06 49.1 7.4 43 146-189 24-70 (231)
372 4e22_A Cytidylate kinase; P-lo 92.6 0.064 2.2E-06 54.0 3.6 26 146-171 26-51 (252)
373 1uj2_A Uridine-cytidine kinase 92.6 0.069 2.4E-06 53.7 3.8 27 145-171 20-46 (252)
374 1htw_A HI0065; nucleotide-bind 92.6 0.069 2.4E-06 49.2 3.5 26 146-171 32-57 (158)
375 2z0h_A DTMP kinase, thymidylat 92.6 0.067 2.3E-06 51.3 3.6 23 149-171 2-24 (197)
376 2p5t_B PEZT; postsegregational 92.6 0.082 2.8E-06 53.2 4.3 26 146-171 31-56 (253)
377 1gtv_A TMK, thymidylate kinase 92.5 0.041 1.4E-06 53.8 1.9 24 148-171 1-24 (214)
378 3dl0_A Adenylate kinase; phosp 92.5 0.067 2.3E-06 52.3 3.5 23 149-171 2-24 (216)
379 3aez_A Pantothenate kinase; tr 92.5 0.073 2.5E-06 55.3 3.9 27 145-171 88-114 (312)
380 2jeo_A Uridine-cytidine kinase 92.5 0.076 2.6E-06 53.2 3.9 26 146-171 24-49 (245)
381 3jvv_A Twitching mobility prot 92.5 0.059 2E-06 57.0 3.2 113 146-270 122-234 (356)
382 2v54_A DTMP kinase, thymidylat 92.5 0.075 2.6E-06 51.3 3.7 25 147-171 4-28 (204)
383 1z6g_A Guanylate kinase; struc 92.5 0.059 2E-06 52.9 2.9 26 146-171 22-47 (218)
384 2r6a_A DNAB helicase, replicat 92.4 2.1 7.2E-05 46.9 15.8 51 146-200 202-252 (454)
385 1rj9_A FTSY, signal recognitio 92.3 0.083 2.8E-06 54.6 4.0 26 146-171 101-126 (304)
386 1s96_A Guanylate kinase, GMP k 92.1 0.083 2.8E-06 51.7 3.5 26 146-171 15-40 (219)
387 2v3c_C SRP54, signal recogniti 92.1 0.1 3.5E-06 56.8 4.5 25 147-171 99-123 (432)
388 2pez_A Bifunctional 3'-phospho 92.1 0.085 2.9E-06 49.8 3.5 25 147-171 5-29 (179)
389 3sr0_A Adenylate kinase; phosp 92.0 0.088 3E-06 50.9 3.6 23 149-171 2-24 (206)
390 1m7g_A Adenylylsulfate kinase; 92.0 0.088 3E-06 51.3 3.6 27 145-171 23-49 (211)
391 3oaa_A ATP synthase subunit al 92.0 0.54 1.9E-05 51.1 9.9 99 138-240 152-265 (513)
392 2i3b_A HCR-ntpase, human cance 92.0 0.076 2.6E-06 50.6 2.9 24 148-171 2-25 (189)
393 3vr4_D V-type sodium ATPase su 92.0 0.17 6E-06 54.4 6.0 89 148-240 152-259 (465)
394 2f1r_A Molybdopterin-guanine d 92.0 0.061 2.1E-06 50.3 2.2 24 148-171 3-26 (171)
395 3mfy_A V-type ATP synthase alp 91.9 0.34 1.1E-05 53.3 8.2 57 138-199 217-275 (588)
396 3nwj_A ATSK2; P loop, shikimat 91.9 0.076 2.6E-06 53.1 2.9 25 147-171 48-72 (250)
397 3r20_A Cytidylate kinase; stru 91.9 0.094 3.2E-06 51.7 3.5 25 147-171 9-33 (233)
398 2f6r_A COA synthase, bifunctio 91.9 0.092 3.1E-06 53.7 3.7 23 146-168 74-96 (281)
399 3p32_A Probable GTPase RV1496/ 91.8 0.17 5.7E-06 53.8 5.7 37 135-171 65-103 (355)
400 1vht_A Dephospho-COA kinase; s 91.8 0.1 3.4E-06 51.1 3.7 23 147-169 4-26 (218)
401 3ake_A Cytidylate kinase; CMP 91.8 0.097 3.3E-06 50.7 3.6 23 149-171 4-26 (208)
402 3be4_A Adenylate kinase; malar 91.7 0.095 3.3E-06 51.3 3.5 24 148-171 6-29 (217)
403 3d3q_A TRNA delta(2)-isopenten 91.7 0.095 3.2E-06 54.6 3.6 24 148-171 8-31 (340)
404 1e4v_A Adenylate kinase; trans 91.7 0.099 3.4E-06 51.0 3.5 23 149-171 2-24 (214)
405 2xb4_A Adenylate kinase; ATP-b 91.7 0.099 3.4E-06 51.4 3.5 23 149-171 2-24 (223)
406 3end_A Light-independent proto 91.7 0.14 4.9E-06 53.1 5.0 42 145-189 39-80 (307)
407 4akg_A Glutathione S-transfera 91.7 0.64 2.2E-05 61.7 11.9 79 148-239 1268-1346(2695)
408 1ak2_A Adenylate kinase isoenz 91.6 0.11 3.9E-06 51.4 4.0 26 146-171 15-40 (233)
409 3k1j_A LON protease, ATP-depen 91.6 0.23 7.8E-06 57.0 7.0 44 126-171 41-84 (604)
410 2onk_A Molybdate/tungstate ABC 91.5 0.11 3.6E-06 51.7 3.6 26 145-171 23-48 (240)
411 1np6_A Molybdopterin-guanine d 91.5 0.12 4E-06 48.5 3.6 26 146-171 5-30 (174)
412 2ehv_A Hypothetical protein PH 91.5 0.097 3.3E-06 52.4 3.4 24 146-169 29-52 (251)
413 1sq5_A Pantothenate kinase; P- 91.4 0.18 6.3E-06 52.3 5.5 27 145-171 78-104 (308)
414 3b9q_A Chloroplast SRP recepto 91.4 0.11 3.9E-06 53.5 3.7 26 146-171 99-124 (302)
415 3lnc_A Guanylate kinase, GMP k 91.4 0.071 2.4E-06 52.8 2.1 25 147-171 27-52 (231)
416 2og2_A Putative signal recogni 91.3 0.2 6.8E-06 52.9 5.6 26 146-171 156-181 (359)
417 3crm_A TRNA delta(2)-isopenten 91.3 0.11 3.8E-06 53.7 3.5 24 148-171 6-29 (323)
418 3a8t_A Adenylate isopentenyltr 91.2 0.11 3.9E-06 53.8 3.6 25 147-171 40-64 (339)
419 3exa_A TRNA delta(2)-isopenten 91.2 0.13 4.3E-06 52.7 3.8 24 148-171 4-27 (322)
420 3bgw_A DNAB-like replicative h 91.2 0.5 1.7E-05 51.7 8.8 51 146-201 196-246 (444)
421 1q57_A DNA primase/helicase; d 91.0 0.59 2E-05 52.2 9.5 52 146-201 241-292 (503)
422 2qe7_A ATP synthase subunit al 91.0 0.41 1.4E-05 52.1 7.7 98 138-240 152-265 (502)
423 2pcj_A ABC transporter, lipopr 91.0 0.1 3.5E-06 51.3 2.8 26 146-171 29-54 (224)
424 3tif_A Uncharacterized ABC tra 90.9 0.1 3.6E-06 51.7 2.8 26 146-171 30-55 (235)
425 1cr0_A DNA primase/helicase; R 90.9 0.26 8.9E-06 50.8 6.0 52 146-201 34-85 (296)
426 1oix_A RAS-related protein RAB 90.7 0.14 4.6E-06 48.9 3.4 25 147-171 29-53 (191)
427 4eaq_A DTMP kinase, thymidylat 90.7 0.24 8.2E-06 48.8 5.3 26 146-171 25-50 (229)
428 3io3_A DEHA2D07832P; chaperone 90.7 0.28 9.5E-06 51.7 6.0 49 142-191 13-61 (348)
429 1nlf_A Regulatory protein REPA 90.7 0.2 6.9E-06 51.1 4.8 26 146-171 29-54 (279)
430 3b85_A Phosphate starvation-in 90.7 0.097 3.3E-06 50.7 2.3 23 148-170 23-45 (208)
431 3iqw_A Tail-anchored protein t 90.5 0.34 1.2E-05 50.7 6.4 49 142-193 11-59 (334)
432 1yrb_A ATP(GTP)binding protein 90.5 0.15 5E-06 51.5 3.6 26 146-171 13-38 (262)
433 2r9v_A ATP synthase subunit al 90.5 0.36 1.2E-05 52.6 6.7 98 138-240 165-278 (515)
434 3cmu_A Protein RECA, recombina 90.5 0.5 1.7E-05 60.5 8.9 97 136-240 369-472 (2050)
435 3foz_A TRNA delta(2)-isopenten 90.5 0.15 5.3E-06 52.0 3.6 26 146-171 9-34 (316)
436 2cbz_A Multidrug resistance-as 90.4 0.12 4.2E-06 51.2 2.9 26 146-171 30-55 (237)
437 2dyk_A GTP-binding protein; GT 90.4 0.16 5.5E-06 46.5 3.4 24 148-171 2-25 (161)
438 3lv8_A DTMP kinase, thymidylat 90.3 0.33 1.1E-05 47.9 5.8 36 147-184 27-62 (236)
439 2d2e_A SUFC protein; ABC-ATPas 90.3 0.15 5.1E-06 51.1 3.4 25 146-170 28-52 (250)
440 1a7j_A Phosphoribulokinase; tr 90.3 0.089 3E-06 54.1 1.7 26 146-171 4-29 (290)
441 3gfo_A Cobalt import ATP-bindi 90.3 0.12 4.3E-06 52.3 2.8 26 146-171 33-58 (275)
442 1b0u_A Histidine permease; ABC 90.3 0.13 4.3E-06 52.0 2.8 26 146-171 31-56 (262)
443 2r8r_A Sensor protein; KDPD, P 90.3 0.23 8E-06 48.2 4.5 37 149-188 8-44 (228)
444 2c61_A A-type ATP synthase non 90.2 0.25 8.4E-06 53.6 5.1 101 138-240 142-260 (469)
445 3cmw_A Protein RECA, recombina 90.2 0.46 1.6E-05 60.0 8.2 87 146-240 382-472 (1706)
446 1ji0_A ABC transporter; ATP bi 90.2 0.13 4.6E-06 51.1 2.9 26 146-171 31-56 (240)
447 2zu0_C Probable ATP-dependent 90.1 0.15 5.3E-06 51.5 3.3 25 146-170 45-69 (267)
448 2wji_A Ferrous iron transport 90.1 0.16 5.4E-06 47.1 3.1 23 148-170 4-26 (165)
449 3gqb_B V-type ATP synthase bet 90.1 0.21 7.1E-06 53.8 4.3 102 138-240 137-262 (464)
450 2pze_A Cystic fibrosis transme 90.1 0.14 4.7E-06 50.6 2.8 26 146-171 33-58 (229)
451 1sgw_A Putative ABC transporte 90.0 0.12 4E-06 50.4 2.3 26 146-171 34-59 (214)
452 2olj_A Amino acid ABC transpor 90.0 0.14 4.7E-06 51.7 2.8 26 146-171 49-74 (263)
453 4g1u_C Hemin import ATP-bindin 90.0 0.14 4.7E-06 51.8 2.8 26 146-171 36-61 (266)
454 3vr4_A V-type sodium ATPase ca 90.0 1.1 3.7E-05 49.5 9.9 57 138-199 222-280 (600)
455 3zvl_A Bifunctional polynucleo 90.0 0.16 5.4E-06 55.2 3.5 27 145-171 256-282 (416)
456 1ltq_A Polynucleotide kinase; 90.0 0.16 5.5E-06 52.5 3.5 24 148-171 3-26 (301)
457 2f9l_A RAB11B, member RAS onco 90.0 0.17 5.9E-06 48.5 3.5 24 148-171 6-29 (199)
458 1g6h_A High-affinity branched- 90.0 0.14 4.8E-06 51.5 2.8 26 146-171 32-57 (257)
459 3hjn_A DTMP kinase, thymidylat 90.0 0.44 1.5E-05 45.6 6.2 23 149-171 2-24 (197)
460 2ged_A SR-beta, signal recogni 89.9 0.32 1.1E-05 46.2 5.3 26 146-171 47-72 (193)
461 2q6t_A DNAB replication FORK h 89.9 0.78 2.7E-05 50.3 9.1 53 146-202 199-251 (444)
462 4tmk_A Protein (thymidylate ki 89.9 0.4 1.4E-05 46.5 5.9 52 148-201 4-55 (213)
463 1q3t_A Cytidylate kinase; nucl 89.8 0.21 7.1E-06 49.6 4.0 26 146-171 15-40 (236)
464 2v9p_A Replication protein E1; 89.8 0.18 6.1E-06 51.9 3.5 27 145-171 124-150 (305)
465 2ff7_A Alpha-hemolysin translo 89.8 0.15 5E-06 51.0 2.8 26 146-171 34-59 (247)
466 2qmh_A HPR kinase/phosphorylas 89.8 0.16 5.5E-06 48.1 2.8 25 147-171 34-58 (205)
467 1vpl_A ABC transporter, ATP-bi 89.8 0.15 5.1E-06 51.2 2.8 26 146-171 40-65 (256)
468 2ocp_A DGK, deoxyguanosine kin 89.7 0.2 6.7E-06 49.9 3.7 25 147-171 2-26 (241)
469 1mv5_A LMRA, multidrug resista 89.7 0.15 5.1E-06 50.8 2.8 26 146-171 27-52 (243)
470 2ce2_X GTPase HRAS; signaling 89.7 0.18 6E-06 46.3 3.1 23 149-171 5-27 (166)
471 2qi9_C Vitamin B12 import ATP- 89.6 0.16 5.4E-06 50.8 2.8 26 146-171 25-50 (249)
472 2zej_A Dardarin, leucine-rich 89.6 0.14 4.7E-06 48.5 2.3 22 149-170 4-25 (184)
473 2ghi_A Transport protein; mult 89.5 0.16 5.5E-06 51.2 2.9 26 146-171 45-70 (260)
474 2eyu_A Twitching motility prot 89.5 0.29 9.8E-06 49.3 4.7 113 145-269 23-135 (261)
475 2ixe_A Antigen peptide transpo 89.5 0.16 5.5E-06 51.5 2.9 26 146-171 44-69 (271)
476 2nq2_C Hypothetical ABC transp 89.3 0.17 5.7E-06 50.8 2.8 26 146-171 30-55 (253)
477 2yz2_A Putative ABC transporte 89.3 0.17 5.8E-06 51.2 2.9 26 146-171 32-57 (266)
478 1g8f_A Sulfate adenylyltransfe 89.3 0.34 1.2E-05 53.6 5.4 43 129-171 375-419 (511)
479 3sop_A Neuronal-specific septi 89.2 0.2 7E-06 50.7 3.4 23 149-171 4-26 (270)
480 2ihy_A ABC transporter, ATP-bi 89.2 0.17 5.8E-06 51.6 2.8 26 146-171 46-71 (279)
481 2wjg_A FEOB, ferrous iron tran 89.2 0.21 7.1E-06 47.2 3.3 23 148-170 8-30 (188)
482 1svm_A Large T antigen; AAA+ f 89.2 0.22 7.7E-06 52.9 3.8 27 145-171 167-193 (377)
483 1z2a_A RAS-related protein RAB 89.2 0.2 6.8E-06 46.2 3.1 24 148-171 6-29 (168)
484 3con_A GTPase NRAS; structural 89.1 0.2 6.9E-06 47.5 3.2 24 148-171 22-45 (190)
485 4gzl_A RAS-related C3 botulinu 89.1 0.23 7.7E-06 47.9 3.5 41 131-171 14-54 (204)
486 2ck3_A ATP synthase subunit al 89.0 0.61 2.1E-05 50.9 7.1 103 138-240 152-273 (510)
487 3eph_A TRNA isopentenyltransfe 89.0 0.22 7.5E-06 53.0 3.5 24 148-171 3-26 (409)
488 4edh_A DTMP kinase, thymidylat 89.0 0.53 1.8E-05 45.7 6.1 31 148-180 7-37 (213)
489 1cp2_A CP2, nitrogenase iron p 89.0 0.37 1.3E-05 48.7 5.2 38 148-188 2-39 (269)
490 1zj6_A ADP-ribosylation factor 89.0 0.35 1.2E-05 45.7 4.7 35 135-170 5-39 (187)
491 1u0j_A DNA replication protein 88.9 0.42 1.4E-05 47.8 5.3 37 135-171 90-128 (267)
492 3upu_A ATP-dependent DNA helic 88.9 0.43 1.5E-05 52.6 6.1 40 131-171 30-69 (459)
493 1fx0_A ATP synthase alpha chai 88.7 0.56 1.9E-05 51.2 6.5 89 147-240 163-266 (507)
494 4hlc_A DTMP kinase, thymidylat 88.7 0.42 1.5E-05 46.0 5.1 24 148-171 3-26 (205)
495 1u8z_A RAS-related protein RAL 88.6 0.23 8E-06 45.6 3.2 24 148-171 5-28 (168)
496 2vp4_A Deoxynucleoside kinase; 88.6 0.18 6.1E-06 49.8 2.4 25 146-170 19-43 (230)
497 3gmt_A Adenylate kinase; ssgci 88.6 0.25 8.4E-06 48.3 3.3 24 148-171 9-32 (230)
498 2orv_A Thymidine kinase; TP4A 88.5 0.47 1.6E-05 46.1 5.2 108 147-268 19-127 (234)
499 1p9r_A General secretion pathw 88.5 0.65 2.2E-05 50.1 6.9 28 144-171 164-191 (418)
500 3cmw_A Protein RECA, recombina 88.5 0.68 2.3E-05 58.5 7.9 87 146-240 1430-1520(1706)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3e-48 Score=446.95 Aligned_cols=312 Identities=16% Similarity=0.153 Sum_probs=251.0
Q ss_pred cchhHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHh--hhcCCCCCCCEEEEEEeCCcc--CHHHHHHHHHH
Q 048126 129 VGLESMFDKVWRCLGEE---QVGIIGLYGMGGVGKTTLLTKINN--KLLGAPNDFDVVIWVVVSKDL--QLEKIQEKIGR 201 (863)
Q Consensus 129 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~ 201 (863)
|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. +++.+|+.++||++++.+ ++..++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 69999999999999653 689999999999999999999998 44 568899999999999985 78999999999
Q ss_pred HhCCCCc-----cccCCChhHHHHHHHHHhccC-cEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhhhccc-
Q 048126 202 RIGFLDE-----SWKNGSLEDKASDILRILSKK-KFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEICGAMK- 274 (863)
Q Consensus 202 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~- 274 (863)
+++.... .....+.+++...+++.++++ ||||||||||+...+ .+. ..+||+||||||+..++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCC
Confidence 9986531 112234456788999999996 999999999997654 111 127999999999999988776
Q ss_pred ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 048126 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKKTTQEWHHAIQILRRSSS 354 (863)
Q Consensus 275 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~ 354 (863)
...+|+|++|+.+|||+||.+.++... .++++.+++++|+++|+|+|||++++|+.|+.+ + |+.+ +.+.+..+
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLE 356 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhh
Confidence 446799999999999999999987643 246788899999999999999999999999764 2 4433 44443322
Q ss_pred CCCCCcchhhhhhhhhcCCCCchhhHHHHh-----------HhccCCCCccccHHhHHHHHHhc--CCCCCcc-cchhhh
Q 048126 355 EFPGMGKEVYPLLKFSYDSLPDDTIRSCFL-----------YCGLFPEDYRIRKSELIDCWIGE--GFLDQYD-RSGAYN 420 (863)
Q Consensus 355 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~~~~ 420 (863)
... ...+..++.+||++||. ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ ....++
T Consensus 357 ~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 357 SRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp HHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred ccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 111 24688999999999999 8999999 999999999999 8899999 9998765 455666
Q ss_pred hHHHHHHHHHHhccccccccccccccccceEEeehhHHHHHHHHHHhh
Q 048126 421 EGYYIIGILLHACLLEEEEGDIAEEKSGEHVVKMHDVIRDMVLWIACK 468 (863)
Q Consensus 421 ~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdli~d~a~~~~~~ 468 (863)
.++ |+++|+++||+++... +...+|+|||+||++|++++.+
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~------~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKR------MPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEEC------SSSCEEECCHHHHHHHHTTSCT
T ss_pred HHH-HHHHHHHcCCeeEecC------CCceEEEeChHHHHHHHHHHHH
Confidence 666 9999999999998752 1356899999999999988754
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.5e-40 Score=379.01 Aligned_cols=286 Identities=19% Similarity=0.264 Sum_probs=230.0
Q ss_pred CccchhHHHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCE-EEEEEeCCccCHHHHHHHHHHHhC
Q 048126 127 PTVGLESMFDKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDV-VIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..|||+.++++|.++|.. +..++|+|+||||+||||||+++|++. +++.+|+. ++|+++++.++...++..|+..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 359999999999999975 568999999999999999999999875 45678986 999999999998888888877543
Q ss_pred CCCccc----c-----CCChhHHHHHHHHHh---ccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhhhc
Q 048126 205 FLDESW----K-----NGSLEDKASDILRIL---SKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEICGA 272 (863)
Q Consensus 205 ~~~~~~----~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~ 272 (863)
...... . ..+.++....+++.+ .+||+||||||||+...|+.+. +||+||||||++.++..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 211000 0 012344566677765 6799999999999988887652 68999999999999865
Q ss_pred ccccceEeec------CCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCC-CChhHHHHH
Q 048126 273 MKAHEFLKVE------CLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCK-KTTQEWHHA 345 (863)
Q Consensus 273 ~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~~w~~~ 345 (863)
+.....+.++ +|+.+|||+||.+.+... ..++..+| |+|+||||+++|+.|+++ .+..+|...
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 5544466777 999999999999985321 22334444 999999999999999986 367788752
Q ss_pred HHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhh-HHHHhHhccCCCCccccHHhHHHHHHhcCCCCCcccchhhhhHHH
Q 048126 346 IQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTI-RSCFLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYY 424 (863)
Q Consensus 346 l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 424 (863)
..+.+..+|.+||+.||+ +. |.||+|||+||+++.|+++.++.+|+++| ++.+..
T Consensus 351 -------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~ 406 (1221)
T 1vt4_I 351 -------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMV 406 (1221)
T ss_dssp -------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHH
T ss_pred -------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHH
Confidence 125799999999999999 77 99999999999999999999999999987 235788
Q ss_pred HHHHHHHhccccccccccccccccceEEeehhHHHHHH
Q 048126 425 IIGILLHACLLEEEEGDIAEEKSGEHVVKMHDVIRDMV 462 (863)
Q Consensus 425 ~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdli~d~a 462 (863)
++++|+++||++... ....|+|||++++++
T Consensus 407 ~L~eLvdRSLLq~d~--------~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQP--------KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTSSSSSBCS--------SSSEEBCCCHHHHHH
T ss_pred HHHHHHhhCCEEEeC--------CCCEEEehHHHHHHh
Confidence 999999999999853 156899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6e-38 Score=401.08 Aligned_cols=313 Identities=20% Similarity=0.262 Sum_probs=254.2
Q ss_pred CCCccchhHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCC-CCCEEEEEEeCCccC--HHHHHHHH
Q 048126 125 CEPTVGLESMFDKVWRCLG--EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPN-DFDVVIWVVVSKDLQ--LEKIQEKI 199 (863)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~F~~~~wv~~s~~~~--~~~~~~~i 199 (863)
...||||+.++++|.++|. +++.++|+|+||||+||||||+++|++.+.... .|+.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 3569999999999999995 357899999999999999999999998522234 456888999998543 44557777
Q ss_pred HHHhCCCCcc--ccCCChhHHHHHHHHHhccC--cEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhhhc-cc
Q 048126 200 GRRIGFLDES--WKNGSLEDKASDILRILSKK--KFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEICGA-MK 274 (863)
Q Consensus 200 ~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~-~~ 274 (863)
+..+...... ....+.+++...++..+.++ ||||||||||+...|..+ .+||+||||||++.++.. ++
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCS
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcC
Confidence 7777654321 12345677888899999887 999999999998777664 468999999999999854 45
Q ss_pred ccceEeecC-CChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 048126 275 AHEFLKVEC-LGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKKTTQEWHHAIQILRRSS 353 (863)
Q Consensus 275 ~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 353 (863)
....+.+.+ |+++||++||...++.. .+.+.+++++|+++|+|+||||+++|+.|+.+. ..|..+++.+....
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 667889986 99999999999988543 345567899999999999999999999998744 47999999997764
Q ss_pred CCC-CC----CcchhhhhhhhhcCCCCchhhHHHHhHhccCCCCccccHHhHHHHHHhcCCCCCcccchhhhhHHHHHHH
Q 048126 354 SEF-PG----MGKEVYPLLKFSYDSLPDDTIRSCFLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYIIGI 428 (863)
Q Consensus 354 ~~~-~~----~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~ 428 (863)
+.. .. ..+.+..++.+||+.||+ ++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~ 417 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQE 417 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHH
Confidence 321 11 114689999999999999 899999999999999999999999999665 3667889999
Q ss_pred HHHhccccccccccccccccceEEeehhHHHHHHHHHHhh
Q 048126 429 LLHACLLEEEEGDIAEEKSGEHVVKMHDVIRDMVLWIACK 468 (863)
Q Consensus 429 L~~~sll~~~~~~~~~~~~~~~~~~mHdli~d~a~~~~~~ 468 (863)
|+++||++... ++...+|+||++||++|+..+.+
T Consensus 418 L~~~sl~~~~~------~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 418 FVNKSLLFCNR------NGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHTTSCEEEE------SSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHhccceEEec------CCCceEEEecHHHHHHHHhhhhH
Confidence 99999998754 22356799999999999988654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=343.19 Aligned_cols=306 Identities=20% Similarity=0.281 Sum_probs=238.2
Q ss_pred CCccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCC-CCCC-CEEEEEEeCCccCHHHHHH---H
Q 048126 126 EPTVGLESMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGA-PNDF-DVVIWVVVSKDLQLEKIQE---K 198 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~---~ 198 (863)
..||||+.++++|.++|.. ++.++|+|+||||+||||||++++++. ++ ..+| +.++|++++.. +...+.. .
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 5799999999999999973 467899999999999999999999875 33 4678 58999999876 3333333 3
Q ss_pred HHHHhCCCC--ccccCCChhHHHHHHHHHhcc--CcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhhhccc
Q 048126 199 IGRRIGFLD--ESWKNGSLEDKASDILRILSK--KKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEICGAMK 274 (863)
Q Consensus 199 i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~ 274 (863)
++..++... ......+.+.....+.+.+.+ +++||||||||+...+..+ .+|++||||||+..++..+.
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC
Confidence 344554211 111334566777888888877 7899999999987655543 45899999999998876544
Q ss_pred ccceEee---cCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 048126 275 AHEFLKV---ECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTCKKTTQEWHHAIQILRR 351 (863)
Q Consensus 275 ~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~l~~ 351 (863)
...+.+ ++|+.+|+++||...++... +...+.+.+|+++|+|+|+|+..+|+.++.+ ...|..+++.+..
T Consensus 275 -~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~ 347 (591)
T 1z6t_A 275 -GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQN 347 (591)
T ss_dssp -SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHS
T ss_pred -CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHH
Confidence 234444 58999999999999887532 2234578999999999999999999999864 3479999998876
Q ss_pred cCCC-C----CCCcchhhhhhhhhcCCCCchhhHHHHhHhccCCCCccccHHhHHHHHHhcCCCCCcccchhhhhHHHHH
Q 048126 352 SSSE-F----PGMGKEVYPLLKFSYDSLPDDTIRSCFLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYII 426 (863)
Q Consensus 352 ~~~~-~----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~ 426 (863)
.... + ......+..++.+||+.||+ +.|.||++||+||+++.|+.+.++..|.++ .+.+..++
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l 415 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDIL 415 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHH
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHH
Confidence 5322 1 11124788999999999999 799999999999999999999999999654 24567889
Q ss_pred HHHHHhccccccccccccccccceEEeehhHHHHHHHHH
Q 048126 427 GILLHACLLEEEEGDIAEEKSGEHVVKMHDVIRDMVLWI 465 (863)
Q Consensus 427 ~~L~~~sll~~~~~~~~~~~~~~~~~~mHdli~d~a~~~ 465 (863)
++|+++||++... ++....|+||+++|++++..
T Consensus 416 ~~L~~~~Ll~~~~------~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 416 QEFVNKSLLFCDR------NGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHTTSSEEEE------ETTEEEEECCHHHHHHHHHH
T ss_pred HHHHhCcCeEEec------CCCccEEEEcHHHHHHHHhh
Confidence 9999999998643 12256899999999999877
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1e-24 Score=237.39 Aligned_cols=308 Identities=16% Similarity=0.146 Sum_probs=243.5
Q ss_pred CcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCC
Q 048126 487 APEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (863)
Q Consensus 487 ~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (863)
......++++++|++.++.+..++.+..+++|++|++++|.++.+++ +.++++|++|++++| .+..+| .+.++++|
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNL 112 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTC
T ss_pred cccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcC
Confidence 34456778999999999999988888999999999999999988876 889999999999999 455565 68999999
Q ss_pred CeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEE
Q 048126 567 EHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALT 646 (863)
Q Consensus 567 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~ 646 (863)
++|++++|.++.+|. +..+++|++|++++|..+..++. +..+++|++|++.+|..... ..+..+++|+.|+
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV------TPIANLTDLYSLS 183 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEE
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc------hhhccCCCCCEEE
Confidence 999999999999887 89999999999999977777765 88999999999999877543 1277899999999
Q ss_pred EEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcc
Q 048126 647 ITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSL 726 (863)
Q Consensus 647 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L 726 (863)
++.+....+.. ....++|+.|.+.++.-.... .+..+++|++|++++|.... +++ . ..+++|
T Consensus 184 l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~-~~~-~---------~~l~~L 245 (347)
T 4fmz_A 184 LNYNQIEDISP----LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITD-LSP-L---------ANLSQL 245 (347)
T ss_dssp CTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCC-CGG-G---------TTCTTC
T ss_pred ccCCccccccc----ccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCC-Ccc-h---------hcCCCC
Confidence 98777654443 223458899998886433222 27788999999999985443 322 2 358999
Q ss_pred cEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCC
Q 048126 727 HTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALA 806 (863)
Q Consensus 727 ~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~ 806 (863)
++|++++| .++.++.+..+++|+.|++++|. ++.+ ..+..+++|+.|++++|.--...+.....
T Consensus 246 ~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~--------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 246 TWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDI--------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp CEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCC--------------GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred CEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCC--------------hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 99999998 67788888999999999999974 4443 13567899999999997543333333456
Q ss_pred CCCcceEeecCCCCCCCCCCCCCCCCCCceEEEccc
Q 048126 807 FPNLKEIRVEGCPKLFKLPLDSNSAKGCKVVIKGEE 842 (863)
Q Consensus 807 ~p~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~~ 842 (863)
+|+|+.|++++|+ ++.+|.....++|+.+++.+++
T Consensus 310 l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 310 LTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred cccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 8999999999985 7777653334889999887663
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.5e-23 Score=223.74 Aligned_cols=297 Identities=15% Similarity=0.165 Sum_probs=235.5
Q ss_pred EEEEcCCCcccCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcccc
Q 048126 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWK 555 (863)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 555 (863)
.+...+......+.+..+++++.|++++|.+..++.+..+++|++|++++|.++.++. +.++++|++|++++|. +..
T Consensus 48 ~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~-i~~ 124 (347)
T 4fmz_A 48 KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDN-ISD 124 (347)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSC-CCC
T ss_pred EEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCc-ccC
Confidence 3444555556667788889999999999999988888999999999999999988753 8999999999999994 556
Q ss_pred CCccccccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHH
Q 048126 556 LPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEE 635 (863)
Q Consensus 556 lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~ 635 (863)
+|. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++.+|.+... ..
T Consensus 125 ~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~------~~ 194 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDI------SP 194 (347)
T ss_dssp CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCC------GG
T ss_pred chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccccc------cc
Confidence 665 89999999999999955444456999999999999999 5677776 78999999999999877532 12
Q ss_pred HcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceecccccc
Q 048126 636 LMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSS 715 (863)
Q Consensus 636 l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 715 (863)
+..+++|+.|+++.+....... ....++|+.|+++++.-.... .+..+++|+.|++++|.... + ...
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~-~--~~~--- 261 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLS---PLANLSQLTWLEIGTNQISD-I--NAV--- 261 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCC-C--GGG---
T ss_pred ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCc---chhcCCCCCEEECCCCccCC-C--hhH---
Confidence 7888999999998877654433 233468999999987543322 27788999999999985433 2 222
Q ss_pred ccccccccCcccEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCc
Q 048126 716 VNQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLR 795 (863)
Q Consensus 716 ~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 795 (863)
..+++|++|++++| .++.++.+..+++|+.|++++|. +.... +..+..+|+|+.|++++|+
T Consensus 262 -----~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~------------~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 262 -----KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNED------------MEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -----TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGG------------HHHHHTCTTCSEEECCSSS
T ss_pred -----hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcC------------hhHhhccccCCEEEccCCc
Confidence 35899999999998 68888889999999999999975 44331 1245678999999999986
Q ss_pred cccccccCCCCCCCcceEeecCCC
Q 048126 796 NLCCINWEALAFPNLKEIRVEGCP 819 (863)
Q Consensus 796 ~L~~i~~~~~~~p~L~~L~i~~C~ 819 (863)
++.++. ...+++|+.|++++|+
T Consensus 323 -l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 323 -ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCCCGG-GGGCTTCSEESSSCC-
T ss_pred -cccccC-hhhhhccceeehhhhc
Confidence 666544 5678999999999874
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.1e-22 Score=230.41 Aligned_cols=312 Identities=16% Similarity=0.219 Sum_probs=181.0
Q ss_pred EEcCCCcccCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCC
Q 048126 478 VHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP 557 (863)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 557 (863)
...+......+.+..+++++.|++++|.+..++.+..+++|++|++++|.+..+++ +.++++|++|++++| .+..+|
T Consensus 52 ~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~ 128 (466)
T 1o6v_A 52 QADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDID 128 (466)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG
T ss_pred ecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCCh
Confidence 33444455566677788888888888888887778888888888888888887776 788888888888888 444555
Q ss_pred ccccccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHc
Q 048126 558 SGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELM 637 (863)
Q Consensus 558 ~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 637 (863)
. ++++++|++|++++|.+..+|. +..+++|++|++++ .+..++. ++++++|++|++.+|..... ..+.
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~~------~~l~ 196 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSDI------SVLA 196 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCCC------GGGG
T ss_pred H-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCCC------hhhc
Confidence 4 7888888888888888777653 55566655555542 2233333 45555556665555544321 1244
Q ss_pred CCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccc----------------------hhhcCCCce
Q 048126 638 GMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFC----------------------LACLHNLNK 695 (863)
Q Consensus 638 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------------l~~~~~L~~ 695 (863)
.+++|+.|+++.+....... ....++|+.|+++++.-.. . .. +..+++|+.
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD-I--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 269 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred cCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCccc-c--hhhhcCCCCCEEECCCCccccchhhhcCCCCCE
Confidence 45555555555444322211 1112344444444432111 1 12 334444555
Q ss_pred EEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCC
Q 048126 696 LYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHH 775 (863)
Q Consensus 696 L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 775 (863)
|++++|.... +++ ...+++|+.|++++| .++.++.++.+++|+.|++++|. +..+.
T Consensus 270 L~l~~n~l~~-~~~----------~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~----------- 325 (466)
T 1o6v_A 270 LKLGANQISN-ISP----------LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDIS----------- 325 (466)
T ss_dssp EECCSSCCCC-CGG----------GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCG-----------
T ss_pred EECCCCccCc-ccc----------ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCch-----------
Confidence 5554442221 111 123566666666665 45555556666666666666653 33221
Q ss_pred CCCCCCcCCccceeccCCCccccccccCCCCCCCcceEeecCCCCCCCCCCCCCCCCCCceEEEcc
Q 048126 776 PERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKLPLDSNSAKGCKVVIKGE 841 (863)
Q Consensus 776 ~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~ 841 (863)
....+++|+.|++++| .+..++ ....+++|+.|++++| +++.++.....++|+.+.+.++
T Consensus 326 ---~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 326 ---PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp ---GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEECCCE
T ss_pred ---hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC-ccCccchhhcCCCCCEEeccCC
Confidence 1445677777777765 444443 3445677777777766 3444433222266776666654
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=5.9e-23 Score=233.81 Aligned_cols=290 Identities=21% Similarity=0.248 Sum_probs=169.7
Q ss_pred cceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCc-cccccCCCCeEE
Q 048126 494 RNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPS-GISTLVSLEHLD 570 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~ 570 (863)
++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|. +..+|. .++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 45666777666666553 34566667777777666666655556666677777776663 334443 456666677777
Q ss_pred ccCCCcccc-chhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEE
Q 048126 571 LSGTAITHL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITL 649 (863)
Q Consensus 571 L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 649 (863)
|++|.+..+ |..+.++++|++|++++| .+..++...+..+++|++|++.+|.+... ....+.++++|+.|++..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSI----PTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSC----CHHHHTTCTTCCEEEEES
T ss_pred CCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCccc----ChhHhcccCCCcEEeCCC
Confidence 776666644 445666667777777666 34444433356666677776666655421 233455666666666654
Q ss_pred cChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEE
Q 048126 650 KSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTV 729 (863)
Q Consensus 650 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 729 (863)
+... ......+..+++|+.|++++|..+..+++.... ..+|++|
T Consensus 186 n~i~---------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------~~~L~~L 229 (477)
T 2id5_A 186 LNIN---------------------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY---------GLNLTSL 229 (477)
T ss_dssp CCCC---------------------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---------TCCCSEE
T ss_pred CcCc---------------------------EeChhhcccCcccceeeCCCCccccccCccccc---------CccccEE
Confidence 4322 111123455667777777776665544333321 3467777
Q ss_pred EEeccCCCCCCc--hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCcccccc-ccCCCC
Q 048126 730 KVGFCFKLKDLT--WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCI-NWEALA 806 (863)
Q Consensus 730 ~L~~c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i-~~~~~~ 806 (863)
+|++| .++.+| .+..+++|+.|+|+++. ++.+. ...+..+++|+.|+|+++ .+..+ +.....
T Consensus 230 ~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 294 (477)
T 2id5_A 230 SITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIE------------GSMLHELLRLQEIQLVGG-QLAVVEPYAFRG 294 (477)
T ss_dssp EEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEEC------------TTSCTTCTTCCEEECCSS-CCSEECTTTBTT
T ss_pred ECcCC-cccccCHHHhcCccccCeeECCCCc-CCccC------------hhhccccccCCEEECCCC-ccceECHHHhcC
Confidence 77776 455665 35567777777777643 43331 224556677777777764 34443 333445
Q ss_pred CCCcceEeecCCCCCCCCCCCCC-C-CCCCceEEEcc
Q 048126 807 FPNLKEIRVEGCPKLFKLPLDSN-S-AKGCKVVIKGE 841 (863)
Q Consensus 807 ~p~L~~L~i~~C~~L~~lp~~~~-~-~~L~~l~i~~~ 841 (863)
+++|+.|++++| +++.+|.... . ++|+.+.+.++
T Consensus 295 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 295 LNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred cccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 677777777765 6666665432 2 56666666543
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.7e-23 Score=249.92 Aligned_cols=327 Identities=13% Similarity=0.146 Sum_probs=222.5
Q ss_pred cccccccceEEEEeccccccc------------------cccC-C--CCCccceEEccCCccccccchhhhcCCCccEEE
Q 048126 488 PEIQNWRNVRRMSLMKNKIEN------------------LSET-P--TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFN 546 (863)
Q Consensus 488 ~~~~~~~~lr~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 546 (863)
+.+..+++|+.|++++|.+.+ +|.. . .+++|++|++++|.+....+..|.++++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 356778889999999988877 6543 4 788999999998876554445688899999999
Q ss_pred ccCCC-ccc-cCCccccccC-------CCCeEEccCCCccccch--hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCc
Q 048126 547 MSNNH-LLW-KLPSGISTLV-------SLEHLDLSGTAITHLPI--ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQ 615 (863)
Q Consensus 547 L~~~~-~~~-~lp~~i~~l~-------~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~ 615 (863)
|++|. +.+ .+|..++++. +|++|++++|.++.+|. .++++++|++|++++| .+..+| . ++.+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcce
Confidence 99986 555 6887777766 89999999888888888 8888888999998888 456788 3 78888888
Q ss_pred EEEeeccccccCchhhHHHHHcCCcc-CceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccC----------------
Q 048126 616 VLRILKSNVLFGGHQFLVEELMGMKH-LMALTITLKSWEALQELLISQELQRCTQSLFLRCFND---------------- 678 (863)
Q Consensus 616 ~L~l~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~---------------- 678 (863)
+|++.+|.+.. .+..+.++++ |+.|+++.+....++....... .++|+.|.++++.-
T Consensus 599 ~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~-~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 599 DLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp EEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC-SSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred EEECcCCcccc-----chHHHhhccccCCEEECcCCCCCcCchhhhccc-cCCCCEEECcCCcCCCccccchhhhccccC
Confidence 88888877652 3344666777 8888887766543322111000 01255555544322
Q ss_pred ------------CCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc-hhh-
Q 048126 679 ------------SKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT-WLV- 744 (863)
Q Consensus 679 ------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~- 744 (863)
...++...+..+++|+.|++++|... .++...... .......+++|+.|+|++| .++.+| .+.
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~-~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~ 749 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP-KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRA 749 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC-TTSCCTTGGGCCEEECCSS-CCCCCCGGGST
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcc-ccccccccCCccEEECCCC-CCccchHHhhh
Confidence 11222122334567777777766433 333322210 0000123448999999988 566666 343
Q ss_pred -ccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCc------cccccccCCCCCCCcceEeecC
Q 048126 745 -FAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLR------NLCCINWEALAFPNLKEIRVEG 817 (863)
Q Consensus 745 -~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~------~L~~i~~~~~~~p~L~~L~i~~ 817 (863)
.+++|+.|+|+++. +..+ +..+..+++|+.|+|++++ -...++.....+++|+.|++++
T Consensus 750 ~~l~~L~~L~Ls~N~-L~~l-------------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNC-FSSF-------------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp TTCTTCCEEECCSSC-CSSC-------------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred ccCCCcCEEEeCCCC-CCcc-------------chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 78899999998854 4444 3456688999999997733 3445666666799999999999
Q ss_pred CCCCCCCCCCCCCCCCCceEEEccc
Q 048126 818 CPKLFKLPLDSNSAKGCKVVIKGEE 842 (863)
Q Consensus 818 C~~L~~lp~~~~~~~L~~l~i~~~~ 842 (863)
| ++..+|.... ++|+.++|++++
T Consensus 816 N-~L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 816 N-DIRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp S-CCCBCCSCCC-SSSCEEECCSCT
T ss_pred C-CCCccCHhhc-CCCCEEECCCCC
Confidence 7 5688998754 789999998775
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=6.6e-23 Score=238.00 Aligned_cols=164 Identities=24% Similarity=0.334 Sum_probs=118.2
Q ss_pred CcccCcccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccc
Q 048126 483 GLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGI 560 (863)
Q Consensus 483 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i 560 (863)
..+.+|.. -.+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+.+..|..+
T Consensus 16 ~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 16 SFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred cccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 44444432 2267888999888887663 35788889999999888888887778888899999999885554445558
Q ss_pred cccCCCCeEEccCCCccc--cchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcC
Q 048126 561 STLVSLEHLDLSGTAITH--LPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMG 638 (863)
Q Consensus 561 ~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 638 (863)
+++++|++|++++|.++. .|..++++++|++|++++|..+..+|...++++++|++|++.+|.+... .+..+..
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~ 170 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY----QSQSLKS 170 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE----CTTTTTT
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc----Chhhhhc
Confidence 888899999999888874 4667888888999998888656777754578888888888887766531 2233444
Q ss_pred CccCceEEEEEcC
Q 048126 639 MKHLMALTITLKS 651 (863)
Q Consensus 639 L~~L~~L~l~~~~ 651 (863)
+++|+.|++..+.
T Consensus 171 l~~L~~L~l~~n~ 183 (549)
T 2z81_A 171 IRDIHHLTLHLSE 183 (549)
T ss_dssp CSEEEEEEEECSB
T ss_pred cccCceEecccCc
Confidence 4444444444433
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.4e-22 Score=227.42 Aligned_cols=338 Identities=17% Similarity=0.184 Sum_probs=240.4
Q ss_pred EEEEcCCCcccCcccccccceEEEEecccccccc--ccCCCCCccceEEccCCccc-cccchhhhcCCCccEEEccCCCc
Q 048126 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENL--SETPTCPHLLSLFLSDNSLK-MIAGDFFQFMPSLRVFNMSNNHL 552 (863)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~~~~ 552 (863)
.+.+.+.+.+.+|.+ .+++++|++++|.+..+ ..+..+++|++|++++|.+. .+++..|.++++|++|+|++|.+
T Consensus 14 ~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 344445556666652 36899999999999876 34689999999999999876 67677799999999999999977
Q ss_pred cccCCccccccCCCCeEEccCCCccc-cchh--hhcCCCCCEEecCCccccCCC-cHHHhhcCCCCcEEEeeccccccCc
Q 048126 553 LWKLPSGISTLVSLEHLDLSGTAITH-LPIE--LQKLVNLKCLNLEYMYNLNQF-PRLVMSAFSKLQVLRILKSNVLFGG 628 (863)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~l-p~~~~~~L~~L~~L~l~~~~~~~~~ 628 (863)
.+..|..++++++|++|++++|.++. +|.. +.++++|++|++++|. +..+ |...++++++|++|++.+|.+....
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccC
Confidence 66678999999999999999999985 4554 8999999999999994 4555 5555789999999999988765421
Q ss_pred hhhHHH-------------------------------HHcCCccCceEEEEEcChHHHH-HHhhhhhhhhcceeeeeccc
Q 048126 629 HQFLVE-------------------------------ELMGMKHLMALTITLKSWEALQ-ELLISQELQRCTQSLFLRCF 676 (863)
Q Consensus 629 ~~~~~~-------------------------------~l~~L~~L~~L~l~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~ 676 (863)
.. ... .+..+++|+.|+++.+...... ..........+++.|.+.++
T Consensus 171 ~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 171 EE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp TT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred hh-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 11 111 1223466777777766543211 11111111247777777765
Q ss_pred cCCCc---------ccccchhh--cCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc--hh
Q 048126 677 NDSKS---------LDIFCLAC--LHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT--WL 743 (863)
Q Consensus 677 ~~~~~---------~~~~~l~~--~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l 743 (863)
..... .....+.. .++|+.|++++|.... ..+.++ ..+++|++|+|++| .+..++ .+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~--------~~l~~L~~L~Ls~n-~l~~~~~~~~ 319 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVF--------SHFTDLEQLTLAQN-EINKIDDNAF 319 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTT--------TTCTTCCEEECTTS-CCCEECTTTT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhc--------ccCCCCCEEECCCC-cccccChhHh
Confidence 32111 01111221 3689999999875443 334433 34899999999998 455543 57
Q ss_pred hccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCcccccc-ccCCCCCCCcceEeecCCCCCC
Q 048126 744 VFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCI-NWEALAFPNLKEIRVEGCPKLF 822 (863)
Q Consensus 744 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~ 822 (863)
+.+++|+.|+++++. ++.+. +..+..+++|+.|+|+++ .++.+ +.....+++|+.|++++| +++
T Consensus 320 ~~l~~L~~L~Ls~N~-l~~~~------------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 320 WGLTHLLKLNLSQNF-LGSID------------SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEEC------------GGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred cCcccCCEEECCCCc-cCCcC------------hhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccc
Confidence 789999999999964 44442 235678999999999997 45555 445667999999999985 889
Q ss_pred CCCCCCC-C-CCCCceEEEccc
Q 048126 823 KLPLDSN-S-AKGCKVVIKGEE 842 (863)
Q Consensus 823 ~lp~~~~-~-~~L~~l~i~~~~ 842 (863)
.+|.... . ++|+.+++.+++
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCHhHhccCCcccEEEccCCC
Confidence 9887553 3 899999998653
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=6.3e-23 Score=227.01 Aligned_cols=304 Identities=14% Similarity=0.169 Sum_probs=241.7
Q ss_pred ccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCe
Q 048126 491 QNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (863)
Q Consensus 491 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (863)
..+++++.+++.++.+..++. +..+++|++|++++|.+..+++..|..+++|++|+|++|.+.+..|..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 345789999999999988876 478999999999999999998878999999999999999666556777899999999
Q ss_pred EEccCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEE
Q 048126 569 LDLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTI 647 (863)
Q Consensus 569 L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l 647 (863)
|++++|.++.+|.. +.++++|++|++++| .+..++...++.+++|++|++.+|.+... .+..+++|+.|++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~L~~L~l 193 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANV 193 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC-------CGGGCTTCSEEEC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc-------ccccccccceeec
Confidence 99999999999987 589999999999998 56777665688999999999999887542 2566888999999
Q ss_pred EEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCccc
Q 048126 648 TLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLH 727 (863)
Q Consensus 648 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~ 727 (863)
+.+....+ ....+|+.|+++++.- ...+ ....++|+.|++++|.... . .++ ..+++|+
T Consensus 194 ~~n~l~~~-------~~~~~L~~L~l~~n~l-~~~~---~~~~~~L~~L~l~~n~l~~-~--~~l--------~~l~~L~ 251 (390)
T 3o6n_A 194 SYNLLSTL-------AIPIAVEELDASHNSI-NVVR---GPVNVELTILKLQHNNLTD-T--AWL--------LNYPGLV 251 (390)
T ss_dssp CSSCCSEE-------ECCSSCSEEECCSSCC-CEEE---CCCCSSCCEEECCSSCCCC-C--GGG--------GGCTTCS
T ss_pred cccccccc-------CCCCcceEEECCCCee-eecc---ccccccccEEECCCCCCcc-c--HHH--------cCCCCcc
Confidence 87654432 2335889999987543 2222 1235799999999985443 2 232 3589999
Q ss_pred EEEEeccCCCCCC--chhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCC
Q 048126 728 TVKVGFCFKLKDL--TWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEAL 805 (863)
Q Consensus 728 ~L~L~~c~~l~~l--~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~ 805 (863)
+|+|++| .++.+ ..++.+++|+.|+++++. ++.+ +.....+|+|+.|+++++ .++.++....
T Consensus 252 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 315 (390)
T 3o6n_A 252 EVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVAL-------------NLYGQPIPTLKVLDLSHN-HLLHVERNQP 315 (390)
T ss_dssp EEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEE-------------ECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred EEECCCC-cCCCcChhHccccccCCEEECCCCc-Cccc-------------CcccCCCCCCCEEECCCC-cceecCcccc
Confidence 9999998 45554 357789999999999954 5554 234567999999999997 6777776666
Q ss_pred CCCCcceEeecCCCCCCCCCCCCCCCCCCceEEEccc
Q 048126 806 AFPNLKEIRVEGCPKLFKLPLDSNSAKGCKVVIKGEE 842 (863)
Q Consensus 806 ~~p~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~~ 842 (863)
.+++|+.|++++| +++.+|.. ..++|+.+++.+++
T Consensus 316 ~l~~L~~L~L~~N-~i~~~~~~-~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 316 QFDRLENLYLDHN-SIVTLKLS-THHTLKNLTLSHND 350 (390)
T ss_dssp HHTTCSEEECCSS-CCCCCCCC-TTCCCSEEECCSSC
T ss_pred ccCcCCEEECCCC-ccceeCch-hhccCCEEEcCCCC
Confidence 7899999999997 68888843 23889999998754
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.2e-22 Score=230.20 Aligned_cols=314 Identities=18% Similarity=0.177 Sum_probs=222.4
Q ss_pred ccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEE
Q 048126 491 QNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570 (863)
Q Consensus 491 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 570 (863)
..+++++.|++.++.+..++.+..+++|++|++++|.+..+++ +.++++|++|++++|. +..+|. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCc-cccChh-hcCCCCCCEEE
Confidence 3467899999999999999888999999999999999999886 8999999999999995 445555 99999999999
Q ss_pred ccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEc
Q 048126 571 LSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLK 650 (863)
Q Consensus 571 L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 650 (863)
+++|.++.+|. +.++++|++|++++| .+..+|. ++.+++|++|++.++ ... ...+.++++|+.|+++.+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~-~~~------~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQ-VTD------LKPLANLTTLERLDISSN 187 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEES-CCC------CGGGTTCTTCCEEECCSS
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCc-ccC------chhhccCCCCCEEECcCC
Confidence 99999999986 999999999999999 5677875 889999999999642 221 123889999999999988
Q ss_pred ChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEE
Q 048126 651 SWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVK 730 (863)
Q Consensus 651 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 730 (863)
....++. ....++|+.|.++++.-....+ +..+++|+.|++++|.... + + .+ ..+++|+.|+
T Consensus 188 ~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-~-~-~l--------~~l~~L~~L~ 249 (466)
T 1o6v_A 188 KVSDISV----LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD-I-G-TL--------ASLTNLTDLD 249 (466)
T ss_dssp CCCCCGG----GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-C-G-GG--------GGCTTCSEEE
T ss_pred cCCCChh----hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc-c-h-hh--------hcCCCCCEEE
Confidence 7655432 2234689999999875433322 6678999999999875332 2 1 11 2356666666
Q ss_pred EeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccc--------cCCCCCCCCcCCccceeccCCCcccccccc
Q 048126 731 VGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQL--------HHHPERKKSVFAKLQFLSLENLRNLCCINW 802 (863)
Q Consensus 731 L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~--------~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~ 802 (863)
+++| .+..++.+..+++|+.|++++|. +..+........+ .......+..+++|+.|++++| .+..+..
T Consensus 250 l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 326 (466)
T 1o6v_A 250 LANN-QISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP 326 (466)
T ss_dssp CCSS-CCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG
T ss_pred CCCC-ccccchhhhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCCCchh
Confidence 6665 34555555666666666666543 2222110000000 0000012456777888888776 3444433
Q ss_pred CCCCCCCcceEeecCCCCCCCCCCCCCCCCCCceEEEccc
Q 048126 803 EALAFPNLKEIRVEGCPKLFKLPLDSNSAKGCKVVIKGEE 842 (863)
Q Consensus 803 ~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~~ 842 (863)
...+++|+.|++++| +++.+|.....++|+.+++.+++
T Consensus 327 -~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp -GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred -hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 446788888888876 67777643334788888887653
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.5e-23 Score=246.42 Aligned_cols=327 Identities=13% Similarity=0.151 Sum_probs=198.9
Q ss_pred ccccccceEEEEeccccccc------------------cccC-C--CCCccceEEccCCccccccchhhhcCCCccEEEc
Q 048126 489 EIQNWRNVRRMSLMKNKIEN------------------LSET-P--TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNM 547 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 547 (863)
.+..+++++.|++++|.+.+ +|.. . ++++|++|++++|.+....+..|+++++|++|+|
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 35566677777777777666 5443 4 5777777777777655444444677777777777
Q ss_pred cCCC-ccc-cCCcccccc------CCCCeEEccCCCccccch--hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEE
Q 048126 548 SNNH-LLW-KLPSGISTL------VSLEHLDLSGTAITHLPI--ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVL 617 (863)
Q Consensus 548 ~~~~-~~~-~lp~~i~~l------~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L 617 (863)
++|. +.+ .+|..++++ ++|++|++++|.++.+|. .++++++|++|++++|.....+| . ++.+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEE
Confidence 7775 444 567666665 677777777777777776 67777777777777763222666 2 6666666666
Q ss_pred EeeccccccCchhhHHHHHcCCcc-CceEEEEEcChHHHHHHhhhh-----------------------h-------hhh
Q 048126 618 RILKSNVLFGGHQFLVEELMGMKH-LMALTITLKSWEALQELLISQ-----------------------E-------LQR 666 (863)
Q Consensus 618 ~l~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~l~~~~-----------------------~-------~~~ 666 (863)
++.+|.+.. .+..+.++++ |+.|+++.+....++...... . ...
T Consensus 359 ~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 359 NLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred ECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 666665431 2233555555 666666555443222110000 0 112
Q ss_pred cceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc-hhh-
Q 048126 667 CTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT-WLV- 744 (863)
Q Consensus 667 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~- 744 (863)
+|+.|+++++.- ..++...+..+++|++|++++|... .++...+.. .......+++|+.|+|++| .++.+| .+.
T Consensus 434 ~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~-~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 509 (636)
T 4eco_A 434 NVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD-ENENFKNTYLLTSIDLRFN-KLTKLSDDFRA 509 (636)
T ss_dssp CEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE-TTEECTTGGGCCEEECCSS-CCCBCCGGGST
T ss_pred CCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc-ccccccccCCccEEECcCC-cCCccChhhhh
Confidence 455555554332 2222222344677777777776443 333332210 0000112338889999887 466666 343
Q ss_pred -ccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCC------CccccccccCCCCCCCcceEeecC
Q 048126 745 -FAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLEN------LRNLCCINWEALAFPNLKEIRVEG 817 (863)
Q Consensus 745 -~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~------~~~L~~i~~~~~~~p~L~~L~i~~ 817 (863)
.+++|+.|+|+++. ++.+ +..+..+++|+.|+|++ +.-...++.....+++|+.|++++
T Consensus 510 ~~l~~L~~L~Ls~N~-l~~i-------------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 510 TTLPYLVGIDLSYNS-FSKF-------------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp TTCTTCCEEECCSSC-CSSC-------------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred ccCCCcCEEECCCCC-CCCc-------------ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 78899999998854 4444 34566789999999964 333455666667789999999988
Q ss_pred CCCCCCCCCCCCCCCCCceEEEccc
Q 048126 818 CPKLFKLPLDSNSAKGCKVVIKGEE 842 (863)
Q Consensus 818 C~~L~~lp~~~~~~~L~~l~i~~~~ 842 (863)
| +++.+|.... ++|+.+++++++
T Consensus 576 N-~l~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 576 N-DIRKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp S-CCCBCCSCCC-TTCCEEECCSCT
T ss_pred C-cCCccCHhHh-CcCCEEECcCCC
Confidence 7 5688997654 889999998764
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=4.6e-23 Score=242.26 Aligned_cols=236 Identities=13% Similarity=0.122 Sum_probs=168.4
Q ss_pred CCCCCccceEEccCCcccc------------------ccchhhh--cCCCccEEEccCCCccccCCccccccCCCCeEEc
Q 048126 512 TPTCPHLLSLFLSDNSLKM------------------IAGDFFQ--FMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (863)
Q Consensus 512 ~~~~~~L~~L~l~~~~l~~------------------~~~~~~~--~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (863)
+.++++|++|++++|.+++ +|.. ++ ++++|++|+|++|.+.+.+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 4678999999999999888 7765 66 8999999999999888899999999999999999
Q ss_pred cCCC-cc--ccchhhhcC------CCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCcc
Q 048126 572 SGTA-IT--HLPIELQKL------VNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKH 641 (863)
Q Consensus 572 ~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 641 (863)
++|. ++ .+|..++++ ++|++|++++| .+..+|. ..++++++|++|++.+|.+.+. .+ .+..+++
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~----ip-~~~~l~~ 354 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGK----LP-AFGSEIK 354 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEE----CC-CCEEEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccc----hh-hhCCCCC
Confidence 9997 88 489988887 99999999998 5668887 2388999999999998887632 23 6788899
Q ss_pred CceEEEEEcChHHHHHHhhhhhhhhc-ceeeeeccccCCCcccccchhh--cCCCceEEEcCCcccccceeccccccccc
Q 048126 642 LMALTITLKSWEALQELLISQELQRC-TQSLFLRCFNDSKSLDIFCLAC--LHNLNKLYVAGRKHLEDFQMTVQRSSVNQ 718 (863)
Q Consensus 642 L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~l~~~~~~~~~~~ 718 (863)
|+.|+++.+....++ ......++ |+.|+++++.-. .++ ..+.. +++|+.|++++|...... +..+.+. ..
T Consensus 355 L~~L~L~~N~l~~lp---~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~~-~~ 427 (636)
T 4eco_A 355 LASLNLAYNQITEIP---ANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYNEIGSVD-GKNFDPL-DP 427 (636)
T ss_dssp ESEEECCSSEEEECC---TTSEEECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSSCTTTTT-TCSSCTT-CS
T ss_pred CCEEECCCCcccccc---HhhhhhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCCcCCCcc-hhhhccc-cc
Confidence 999999877665332 22222345 899999886543 332 22333 348889999887554322 2221100 00
Q ss_pred cccccCcccEEEEeccCCCCCCch--hhccCCCcEEEEeccccchhh
Q 048126 719 LARGFHSLHTVKVGFCFKLKDLTW--LVFAPSLKSIVVLSCCNMEQI 763 (863)
Q Consensus 719 ~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~~~~l~~i 763 (863)
..-.+++|++|+|++| .++.+|. +..+++|+.|+++++. ++.+
T Consensus 428 ~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i 472 (636)
T 4eco_A 428 TPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEI 472 (636)
T ss_dssp SCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBC
T ss_pred ccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCc
Confidence 0013557888888876 4556653 3357778888877743 4433
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1e-22 Score=243.14 Aligned_cols=229 Identities=13% Similarity=0.155 Sum_probs=156.9
Q ss_pred CCCCCccceEEccCCcccc------------------ccchh-hhcCCCccEEEccCCCccccCCccccccCCCCeEEcc
Q 048126 512 TPTCPHLLSLFLSDNSLKM------------------IAGDF-FQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (863)
Q Consensus 512 ~~~~~~L~~L~l~~~~l~~------------------~~~~~-~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (863)
+.++++|++|+|++|.++. +|+.+ |.++++|++|+|++|.+.+.+|..+++|++|++|+|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4678889999999998887 77663 3489999999999987788889889999999999999
Q ss_pred CCC-ccc--cchhhhcCC-------CCCEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCcc
Q 048126 573 GTA-ITH--LPIELQKLV-------NLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKH 641 (863)
Q Consensus 573 ~~~-l~~--lp~~~~~l~-------~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 641 (863)
+|+ ++. +|..+++++ +|++|++++| .+..+|. ..++++++|++|++.+|.+.. .+ .++++++
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp-~~~~L~~ 596 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRH-----LE-AFGTNVK 596 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCB-----CC-CCCTTSE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCccc-----ch-hhcCCCc
Confidence 997 774 888777766 8999999988 5568887 238889999999998887652 22 6788888
Q ss_pred CceEEEEEcChHHHHHHhhhhhhhhc-ceeeeeccccCCCcccccchhhc--CCCceEEEcCCcccccceeccccccccc
Q 048126 642 LMALTITLKSWEALQELLISQELQRC-TQSLFLRCFNDSKSLDIFCLACL--HNLNKLYVAGRKHLEDFQMTVQRSSVNQ 718 (863)
Q Consensus 642 L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~l~~~~~~~~~~~ 718 (863)
|+.|+++.+....++ ......++ |+.|.++++.-. .++ ..+..+ ++|+.|++++|.....+ +.+... .
T Consensus 597 L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~---l 667 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEG-RNISCS---M 667 (876)
T ss_dssp ESEEECCSSCCSCCC---TTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTS-SSCSSC---T
T ss_pred ceEEECcCCccccch---HHHhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCcc-ccchhh---h
Confidence 999998877765333 22222345 888888886533 332 223333 34888888887543321 111100 0
Q ss_pred cccccCcccEEEEeccCCCCCCch--hhccCCCcEEEEecc
Q 048126 719 LARGFHSLHTVKVGFCFKLKDLTW--LVFAPSLKSIVVLSC 757 (863)
Q Consensus 719 ~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~~ 757 (863)
....+++|+.|+|++| .+..+|. +..+++|+.|+|+++
T Consensus 668 ~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 668 DDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp TTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC
T ss_pred ccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC
Confidence 0012346777777776 4555552 235677777777764
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=233.11 Aligned_cols=162 Identities=11% Similarity=-0.001 Sum_probs=92.2
Q ss_pred hcceeeeeccccCCCccc-ccchhhcCCCceEEEcCCcccccceecccccc-------------cc---ccccccCcccE
Q 048126 666 RCTQSLFLRCFNDSKSLD-IFCLACLHNLNKLYVAGRKHLEDFQMTVQRSS-------------VN---QLARGFHSLHT 728 (863)
Q Consensus 666 ~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~-------------~~---~~~~~l~~L~~ 728 (863)
++|+.|+++++.-..... ...+..+++|++|++++|.... +++...... .. .....+++|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 456666665543211110 1345567788888887764332 222211100 00 01133556666
Q ss_pred EEEeccCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCcccccc-ccCCCC
Q 048126 729 VKVGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCI-NWEALA 806 (863)
Q Consensus 729 L~L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i-~~~~~~ 806 (863)
|++++|......+ .+..+++|+.|++++|......+ +..+..+++|+.|++++|. ++.+ +.....
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 492 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL------------PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNS 492 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE------------CSCCTTCTTCCEEECTTSC-CCEECTTTTTT
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc------------hhhhhcccCCCEEECCCCc-cccCChhhhhc
Confidence 6666653222222 34456666666666654211110 3456788999999999874 4554 555667
Q ss_pred CCCcceEeecCCCCCCCCCCCC-CC-CCCCceEEEccc
Q 048126 807 FPNLKEIRVEGCPKLFKLPLDS-NS-AKGCKVVIKGEE 842 (863)
Q Consensus 807 ~p~L~~L~i~~C~~L~~lp~~~-~~-~~L~~l~i~~~~ 842 (863)
+++|+.|++++| +++.+|... .. ++|+.+++.+++
T Consensus 493 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 493 LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 899999999987 788887643 33 889999998643
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.9e-22 Score=237.17 Aligned_cols=343 Identities=18% Similarity=0.129 Sum_probs=217.3
Q ss_pred EEEcCCCcccCcccccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccc
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLW 554 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (863)
+.+.+.+.+.+|.. -.++++.|++++|.+..++. +.++++|++|++++|.++.+++..|.++++|++|+|++|.+.+
T Consensus 16 ~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 16 YQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred eEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 44445556666542 22689999999999987754 6889999999999999999988889999999999999996665
Q ss_pred cCCccccccCCCCeEEccCCCccccc-hhhhcCCCCCEEecCCccccC--CCcHHHhhcCCCCcEEEeeccccccCchhh
Q 048126 555 KLPSGISTLVSLEHLDLSGTAITHLP-IELQKLVNLKCLNLEYMYNLN--QFPRLVMSAFSKLQVLRILKSNVLFGGHQF 631 (863)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~ 631 (863)
..|..++++++|++|++++|.++.+| ..++++++|++|++++|. +. .+|.. ++++++|++|++.+|.+.... ..
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~-~~ 171 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT-VN 171 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEEC-TT
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcceecC-hh
Confidence 56889999999999999999998876 679999999999999984 44 46775 889999999999988765321 11
Q ss_pred HHHHHcCC------------------------ccCceEEEEEcChH--HHHHHhhhhhhhhcceeeeec-----------
Q 048126 632 LVEELMGM------------------------KHLMALTITLKSWE--ALQELLISQELQRCTQSLFLR----------- 674 (863)
Q Consensus 632 ~~~~l~~L------------------------~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~----------- 674 (863)
.+..+.++ .+|+.|+++.+... ..+... ...+.++.+.+.
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL---QNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHH---HTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHh---ccccccccccccccccccCCccc
Confidence 12222222 25666777665432 111111 111223322221
Q ss_pred ---------------------cccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEec
Q 048126 675 ---------------------CFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGF 733 (863)
Q Consensus 675 ---------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 733 (863)
..+...... ..+..+++|+.|+++++.. +.++ .+ ..+++|++|++++
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~-~~l~--~l--------~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSI-KYLE--DV--------PKHFKWQSLSIIR 316 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGG-GSCGGGTTCSEEEEESCCC-CCCC--CC--------CTTCCCSEEEEES
T ss_pred ccChHHhhhhhhccHhheeccccccccccc-cccccCCCCCEEEecCccc-hhhh--hc--------cccccCCEEEccc
Confidence 111111111 1255677888888877654 3232 22 2367778888877
Q ss_pred cCCCCCCchhhccCCCcEEEEeccccchhhccccc--cccc-------cCC--CCCCCCcCCccceeccCCCcccccccc
Q 048126 734 CFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEK--LSQL-------HHH--PERKKSVFAKLQFLSLENLRNLCCINW 802 (863)
Q Consensus 734 c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~--~~~~-------~~~--~~~~~~~~p~L~~L~l~~~~~L~~i~~ 802 (863)
|. +..+|.+ .+++|+.|+++++..+..+..... ...+ ... .+.....+++|+.|+++++. +..++.
T Consensus 317 n~-l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 393 (606)
T 3vq2_A 317 CQ-LKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA 393 (606)
T ss_dssp CC-CSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC
T ss_pred cc-CcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchh
Confidence 74 4666655 677777777777643332200000 0000 000 01233456777777777753 555665
Q ss_pred CCCCCCCcceEeecCCCCCCCCCC--CCCC-CCCCceEEEccc
Q 048126 803 EALAFPNLKEIRVEGCPKLFKLPL--DSNS-AKGCKVVIKGEE 842 (863)
Q Consensus 803 ~~~~~p~L~~L~i~~C~~L~~lp~--~~~~-~~L~~l~i~~~~ 842 (863)
....+++|+.|++++| ++..++. .... ++|+.+++.++.
T Consensus 394 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred hccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC
Confidence 5566788888888876 4444332 2222 788888887654
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.3e-22 Score=235.08 Aligned_cols=303 Identities=14% Similarity=0.169 Sum_probs=240.1
Q ss_pred cccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeE
Q 048126 492 NWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (863)
Q Consensus 492 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (863)
.+++++.+++.++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|+|++|.+.+..|..++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45789999999999988876 4789999999999999999998789999999999999997666566678999999999
Q ss_pred EccCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEE
Q 048126 570 DLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTIT 648 (863)
Q Consensus 570 ~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 648 (863)
+|++|.++.+|.. ++++++|++|++++| .+..++...++++++|++|++.+|.+... .+..+++|+.|+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVS 200 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC-------CGGGCTTCSEEECC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc-------Chhhhhhhhhhhcc
Confidence 9999999999887 589999999999999 56677665589999999999999887642 25668889999988
Q ss_pred EcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccE
Q 048126 649 LKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHT 728 (863)
Q Consensus 649 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~ 728 (863)
.+....+ ..+.+|+.|+++++.- ...+. ...++|+.|++++|.... +.++ ..+++|+.
T Consensus 201 ~n~l~~l-------~~~~~L~~L~ls~n~l-~~~~~---~~~~~L~~L~L~~n~l~~---~~~l--------~~l~~L~~ 258 (597)
T 3oja_B 201 YNLLSTL-------AIPIAVEELDASHNSI-NVVRG---PVNVELTILKLQHNNLTD---TAWL--------LNYPGLVE 258 (597)
T ss_dssp SSCCSEE-------ECCTTCSEEECCSSCC-CEEEC---SCCSCCCEEECCSSCCCC---CGGG--------GGCTTCSE
T ss_pred cCccccc-------cCCchhheeeccCCcc-ccccc---ccCCCCCEEECCCCCCCC---Chhh--------ccCCCCCE
Confidence 7655432 2345789999988643 22221 123789999999986443 2332 35899999
Q ss_pred EEEeccCCCCCC--chhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCC
Q 048126 729 VKVGFCFKLKDL--TWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALA 806 (863)
Q Consensus 729 L~L~~c~~l~~l--~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~ 806 (863)
|+|++|. +..+ ..++.+++|+.|+|+++. +..+ +.....+|+|+.|+|+++ .+..++.....
T Consensus 259 L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l-------------~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~ 322 (597)
T 3oja_B 259 VDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVAL-------------NLYGQPIPTLKVLDLSHN-HLLHVERNQPQ 322 (597)
T ss_dssp EECCSSC-CCEEESGGGTTCSSCCEEECTTSC-CCEE-------------ECSSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred EECCCCc-cCCCCHHHhcCccCCCEEECCCCC-CCCC-------------CcccccCCCCcEEECCCC-CCCccCccccc
Confidence 9999984 5544 357889999999999954 5544 234567999999999996 56677776677
Q ss_pred CCCcceEeecCCCCCCCCCCCCCCCCCCceEEEccc
Q 048126 807 FPNLKEIRVEGCPKLFKLPLDSNSAKGCKVVIKGEE 842 (863)
Q Consensus 807 ~p~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~~ 842 (863)
+++|+.|++++| +++.+|... .++|+.+.+.+++
T Consensus 323 l~~L~~L~L~~N-~l~~~~~~~-~~~L~~L~l~~N~ 356 (597)
T 3oja_B 323 FDRLENLYLDHN-SIVTLKLST-HHTLKNLTLSHND 356 (597)
T ss_dssp HTTCSEEECCSS-CCCCCCCCT-TCCCSEEECCSSC
T ss_pred CCCCCEEECCCC-CCCCcChhh-cCCCCEEEeeCCC
Confidence 999999999997 688887432 3899999998754
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=3e-22 Score=241.05 Aligned_cols=323 Identities=17% Similarity=0.156 Sum_probs=197.3
Q ss_pred cccccceEEEEeccccccc-cccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCe
Q 048126 490 IQNWRNVRRMSLMKNKIEN-LSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (863)
Q Consensus 490 ~~~~~~lr~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (863)
...+++++.|++++|.+.. ++.+..+++|++|++++|.+....+..+.++++|++|++++|.+.+..|.. .+++|++
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 3566778888888887755 345677888888888888777665566778888888888888665555543 6777777
Q ss_pred EEccCCCcc-ccchhhhcC-CCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEE
Q 048126 569 LDLSGTAIT-HLPIELQKL-VNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALT 646 (863)
Q Consensus 569 L~L~~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~ 646 (863)
|++++|.++ .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++.+|...+. .....+.++++|+.|+
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~---ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGE---LPMDTLLKMRGLKVLD 349 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEE---CCHHHHTTCTTCCEEE
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCc---CCHHHHhcCCCCCEEe
Confidence 777777766 667666654 77777777777443355554 67777777777777765421 1122366777777777
Q ss_pred EEEcChH-H----HHHHhh------------------hh--hhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCC
Q 048126 647 ITLKSWE-A----LQELLI------------------SQ--ELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGR 701 (863)
Q Consensus 647 l~~~~~~-~----~~~l~~------------------~~--~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 701 (863)
++.+... . +..+.. .. ...++|+.|.+.++.-... ....+..+++|+.|++++|
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSS
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCC
Confidence 7655432 1 111100 00 0012344444444321111 1123555666666666665
Q ss_pred cccccceeccccccccccccccCcccEEEEeccCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCCCCCC
Q 048126 702 KHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKK 780 (863)
Q Consensus 702 ~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~ 780 (863)
..... .+..+ ..+++|+.|+|++|.....+| .++.+++|+.|++++|.....+ +..+
T Consensus 429 ~l~~~-~p~~l--------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-------------p~~l 486 (768)
T 3rgz_A 429 YLSGT-IPSSL--------GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-------------PSGL 486 (768)
T ss_dssp EEESC-CCGGG--------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC-------------CGGG
T ss_pred cccCc-ccHHH--------hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC-------------CHHH
Confidence 43322 22222 236677777777764333343 4566777777777775422222 3356
Q ss_pred CcCCccceeccCCCccccccccCCCCCCCcceEeecCCCCCCCCCCCCCC-CCCCceEEEcc
Q 048126 781 SVFAKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKLPLDSNS-AKGCKVVIKGE 841 (863)
Q Consensus 781 ~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~-~~L~~l~i~~~ 841 (863)
..+++|+.|+|+++.-...++...+.+++|+.|++++|.-...+|..+.. ++|+.+++.++
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 67788888888887655566666667888888888887544467765554 77888887755
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.1e-21 Score=230.70 Aligned_cols=347 Identities=16% Similarity=0.145 Sum_probs=216.2
Q ss_pred EEEEcCCCcccCcccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcc
Q 048126 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL 553 (863)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (863)
.+.+.+.+...+|.. -.+.++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+.
T Consensus 16 ~~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 16 TYNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp EEECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred eEECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc
Confidence 344445555555532 1247999999999998874 4689999999999999999888888999999999999999777
Q ss_pred ccCCccccccCCCCeEEccCCCcccc-chhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhH
Q 048126 554 WKLPSGISTLVSLEHLDLSGTAITHL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFL 632 (863)
Q Consensus 554 ~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 632 (863)
+..|..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++.+|.+.. ..
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~ 169 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHY----LS 169 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCE----EC
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccc----cC
Confidence 77788999999999999999999987 567999999999999998 4565531114559999999999987753 24
Q ss_pred HHHHcCCccCc--eEEEEEcChHHHHHHhhhh------------------------------------------------
Q 048126 633 VEELMGMKHLM--ALTITLKSWEALQELLISQ------------------------------------------------ 662 (863)
Q Consensus 633 ~~~l~~L~~L~--~L~l~~~~~~~~~~l~~~~------------------------------------------------ 662 (863)
+..++.+++|+ .|+++.+.......-....
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred hhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhc
Confidence 55677777887 5555444322111000000
Q ss_pred hh-hhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc
Q 048126 663 EL-QRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT 741 (863)
Q Consensus 663 ~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 741 (863)
.+ ..+++.|.+.++. ........+..+++|++|++++|.. +.++... ..+++|++|++++| .+..++
T Consensus 250 ~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l---------~~l~~L~~L~l~~n-~l~~~~ 317 (606)
T 3t6q_A 250 GLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHL-SELPSGL---------VGLSTLKKLVLSAN-KFENLC 317 (606)
T ss_dssp GGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSC---------CSCTTCCEEECTTC-CCSBGG
T ss_pred hhhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCcc-CCCChhh---------cccccCCEEECccC-CcCcCc
Confidence 00 0145555555532 2333334466677888888887643 3333222 23566666666665 333332
Q ss_pred --hhhccCCCcEEEEeccccchhhcccccc-----cc-------ccCCC--CCCCCcCCccceeccCCCccccccccCCC
Q 048126 742 --WLVFAPSLKSIVVLSCCNMEQIIKAEKL-----SQ-------LHHHP--ERKKSVFAKLQFLSLENLRNLCCINWEAL 805 (863)
Q Consensus 742 --~l~~l~~L~~L~l~~~~~l~~i~~~~~~-----~~-------~~~~~--~~~~~~~p~L~~L~l~~~~~L~~i~~~~~ 805 (863)
.++.+++|+.|+++++.....+....+. .. ..... +..+..+++|+.|+++++.-....+....
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 3455666666666654322111110000 00 00000 12355667777777776533222233445
Q ss_pred CCCCcceEeecCCCCCCCC-CCC-CCC-CCCCceEEEcc
Q 048126 806 AFPNLKEIRVEGCPKLFKL-PLD-SNS-AKGCKVVIKGE 841 (863)
Q Consensus 806 ~~p~L~~L~i~~C~~L~~l-p~~-~~~-~~L~~l~i~~~ 841 (863)
.+++|+.|++++| +++.. |.. ... ++|+.+++.++
T Consensus 398 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 398 ECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp TCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTC
T ss_pred CCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCC
Confidence 5777888888776 44433 322 222 77888887765
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.2e-21 Score=230.24 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=107.3
Q ss_pred ccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCC
Q 048126 489 EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (863)
.+..+++++.|++++|.+..+. .+..+++|++|++++|.+..+++..|+++++|++|++++|.+.+..|..++++++|
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 4677888999999999887663 35788999999999998888877778899999999999995554446778899999
Q ss_pred CeEEccCCCccccc-hhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCc--EEEeeccccc
Q 048126 567 EHLDLSGTAITHLP-IELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQ--VLRILKSNVL 625 (863)
Q Consensus 567 ~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~--~L~l~~~~~~ 625 (863)
++|++++|.++.++ +.+..+++|++|++++| .+..++...++.+++|+ .|++.+|.+.
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCccC
Confidence 99999999888762 34445889999999988 55666655578888888 7777766543
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=224.19 Aligned_cols=343 Identities=16% Similarity=0.178 Sum_probs=209.6
Q ss_pred EEEEcCCCcccCcccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcc
Q 048126 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL 553 (863)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (863)
.+...+...+.+|.... +++++|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|. +
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l 81 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-L 81 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-C
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-e
Confidence 34444445555553222 78999999999988774 36889999999999999998877778999999999999994 4
Q ss_pred ccCCccccccCCCCeEEccCCCccc--cchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCC--cEEEeecccc--ccC
Q 048126 554 WKLPSGISTLVSLEHLDLSGTAITH--LPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKL--QVLRILKSNV--LFG 627 (863)
Q Consensus 554 ~~lp~~i~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L--~~L~l~~~~~--~~~ 627 (863)
..+|.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|++.+|.+ ...
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeeccccccccc
Confidence 578876 89999999999999885 57889999999999999873 332 225566666 7777766654 100
Q ss_pred c----------------------------------------------------hhhHHHHHcCC----------------
Q 048126 628 G----------------------------------------------------HQFLVEELMGM---------------- 639 (863)
Q Consensus 628 ~----------------------------------------------------~~~~~~~l~~L---------------- 639 (863)
. ....+..+..+
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 0 00001112222
Q ss_pred -----------ccCceEEEEEcChH-HHHHHh----------------------------hhhhhhhcceeeeeccccCC
Q 048126 640 -----------KHLMALTITLKSWE-ALQELL----------------------------ISQELQRCTQSLFLRCFNDS 679 (863)
Q Consensus 640 -----------~~L~~L~l~~~~~~-~~~~l~----------------------------~~~~~~~~L~~L~l~~~~~~ 679 (863)
++|+.|+++.+... .++... .......+|+.|.++++.-.
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccc
Confidence 24555555544322 111000 00000023555555554321
Q ss_pred CcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc----hhhccCCCcEEEEe
Q 048126 680 KSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT----WLVFAPSLKSIVVL 755 (863)
Q Consensus 680 ~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~l~ 755 (863)
. .. ....+++|++|++++|.....+ +.++ ..+++|++|+|++| .++.++ .++.+++|+.|+++
T Consensus 316 ~-~~--~~~~l~~L~~L~Ls~n~l~~~~-~~~~--------~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 316 H-ML--CPSKISPFLHLDFSNNLLTDTV-FENC--------GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp C-CC--CCSSCCCCCEEECCSSCCCTTT-TTTC--------CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECC
T ss_pred c-cc--chhhCCcccEEEeECCccChhh-hhhh--------ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECC
Confidence 1 11 1245677888888776543322 2222 23667777777776 444432 25566777777777
Q ss_pred ccccchh-hccccccc--c---ccCCC----CCCCCcC-CccceeccCCCccccccccCCCCCCCcceEeecCCCCCCCC
Q 048126 756 SCCNMEQ-IIKAEKLS--Q---LHHHP----ERKKSVF-AKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKL 824 (863)
Q Consensus 756 ~~~~l~~-i~~~~~~~--~---~~~~~----~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~l 824 (863)
++. +.. +....+.. . +.... ......+ ++|+.|+++++ +++.++.....+++|+.|++++| +++.+
T Consensus 383 ~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 383 QNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSV 459 (520)
T ss_dssp SSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred CCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCcc
Confidence 644 332 32110000 0 00000 0011122 68899999886 67778776678999999999997 88899
Q ss_pred CCC-CCC-CCCCceEEEccc
Q 048126 825 PLD-SNS-AKGCKVVIKGEE 842 (863)
Q Consensus 825 p~~-~~~-~~L~~l~i~~~~ 842 (863)
|.. ... ++|+.+++.+++
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhccCCcccEEECcCCC
Confidence 976 333 889999988654
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=221.36 Aligned_cols=276 Identities=18% Similarity=0.170 Sum_probs=214.5
Q ss_pred ccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCC
Q 048126 489 EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (863)
.+..+++++.|++++|.+..+. .+..+++|++|++++|.++.++...|.++++|++|+|++|.+....|..+.++++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 4677889999999999988763 46889999999999999999999889999999999999997777778899999999
Q ss_pred CeEEccCCCcccc-chhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceE
Q 048126 567 EHLDLSGTAITHL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMAL 645 (863)
Q Consensus 567 ~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L 645 (863)
++|++++|.+..+ |..+..+++|++|++++| .+..+|...+..+++|+.|++.+|.+... ....+..+++|+.|
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L 205 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVL 205 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEE
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEe----ChhhcccCccccee
Confidence 9999999999876 457999999999999999 67888887789999999999999877532 23457788999999
Q ss_pred EEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCc
Q 048126 646 TITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHS 725 (863)
Q Consensus 646 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 725 (863)
+++.+... ..+........+|+.|+++++. .+..+...+..+++|+.|++++|. ++.+.+..+ ..+++
T Consensus 206 ~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--------~~l~~ 273 (477)
T 2id5_A 206 EISHWPYL--DTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML--------HELLR 273 (477)
T ss_dssp EEECCTTC--CEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSC--------TTCTT
T ss_pred eCCCCccc--cccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCccChhhc--------ccccc
Confidence 99875421 1111111112378889998864 344444457778999999999875 333433333 34789
Q ss_pred ccEEEEeccCCCCCCc--hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCc
Q 048126 726 LHTVKVGFCFKLKDLT--WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLR 795 (863)
Q Consensus 726 L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 795 (863)
|++|+|++| .+..++ .+..+++|+.|+|+++ .++.+. ...+..+++|+.|+|++++
T Consensus 274 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~------------~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 274 LQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLE------------ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCC------------GGGBSCGGGCCEEECCSSC
T ss_pred CCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeC------------HhHcCCCcccCEEEccCCC
Confidence 999999987 455543 4667899999999985 455442 2345678899999998754
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.1e-20 Score=219.61 Aligned_cols=346 Identities=18% Similarity=0.174 Sum_probs=216.0
Q ss_pred cEEEEcCCCcccCcccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCc
Q 048126 475 NFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHL 552 (863)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 552 (863)
..+...+...+.+|... .++++.|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~- 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR- 111 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-
Confidence 34555555566655422 268999999999988875 46889999999999999998888888999999999999994
Q ss_pred cccCCccccccCCCCeEEccCCCccccc--hhhhcCCCCCEEecCCccccCCCcHHHhhcCCCC--cEEEeecccc--cc
Q 048126 553 LWKLPSGISTLVSLEHLDLSGTAITHLP--IELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKL--QVLRILKSNV--LF 626 (863)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L--~~L~l~~~~~--~~ 626 (863)
+..+|.. .+++|++|++++|.++.+| ..++++++|++|++++| .+...+ +..+++| ++|++.+|.+ ..
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSCCCCS
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccccccc
Confidence 5578876 8999999999999998764 78999999999999987 444322 5556666 9999888765 11
Q ss_pred Cc--------------------------------------------------hhhHHHHHcCCccCceEEEEEcChH--H
Q 048126 627 GG--------------------------------------------------HQFLVEELMGMKHLMALTITLKSWE--A 654 (863)
Q Consensus 627 ~~--------------------------------------------------~~~~~~~l~~L~~L~~L~l~~~~~~--~ 654 (863)
.. ....+..+..+++|+.|++..+... .
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 10 0011223334444444444332221 1
Q ss_pred HHHHhhhhhhhhcceeeeeccccCCCccccc-------------------------------------------------
Q 048126 655 LQELLISQELQRCTQSLFLRCFNDSKSLDIF------------------------------------------------- 685 (863)
Q Consensus 655 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------------------------------------- 685 (863)
+..+.... ...+|+.|+++++.-...++..
T Consensus 266 ~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 11111111 1126677777665321111100
Q ss_pred ---chhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCch----hhccCCCcEEEEeccc
Q 048126 686 ---CLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTW----LVFAPSLKSIVVLSCC 758 (863)
Q Consensus 686 ---~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~----l~~l~~L~~L~l~~~~ 758 (863)
....+++|++|++++|.... ..+..+ ..+++|+.|+|++| .++.++. ++.+++|+.|+++++.
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTD-SVFQGC--------STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCT-TTTTTC--------CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cccCccCCCCceEEECCCCcccc-chhhhh--------cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc
Confidence 00344566666666654332 112222 34677778877776 5555442 4567777777777754
Q ss_pred cchh-hccccccc-----cccC----CCCCCCCcC-CccceeccCCCccccccccCCCCCCCcceEeecCCCCCCCCCCC
Q 048126 759 NMEQ-IIKAEKLS-----QLHH----HPERKKSVF-AKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKLPLD 827 (863)
Q Consensus 759 ~l~~-i~~~~~~~-----~~~~----~~~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 827 (863)
++. +....+.+ .+.. ........+ ++|+.|+++++ +++.++.....+++|+.|+++++ +++.+|..
T Consensus 415 -l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 415 -LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp -CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred -CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 333 21110000 0000 000111233 68899999886 77788877778999999999885 78899986
Q ss_pred -CCC-CCCCceEEEccc
Q 048126 828 -SNS-AKGCKVVIKGEE 842 (863)
Q Consensus 828 -~~~-~~L~~l~i~~~~ 842 (863)
... ++|+.+++.+++
T Consensus 492 ~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp STTTCTTCCCEECCSCC
T ss_pred HHhcCCCCCEEEecCCC
Confidence 333 889999988654
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=6.9e-21 Score=219.29 Aligned_cols=144 Identities=19% Similarity=0.225 Sum_probs=121.0
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCc
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 576 (863)
+.+++++|.+..+|.... ++|++|++++|.+..+++..|.++++|++|+|++|.+.+..|..++++++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 578999999998876433 8999999999999999988899999999999999976666688999999999999999999
Q ss_pred cccchhhhcCCCCCEEecCCccccCC--CcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccC--ceEEEEEcCh
Q 048126 577 THLPIELQKLVNLKCLNLEYMYNLNQ--FPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHL--MALTITLKSW 652 (863)
Q Consensus 577 ~~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L--~~L~l~~~~~ 652 (863)
+.+|.. .+++|++|++++| .+.. +|.. ++++++|++|++.+|.+... .+..+++| +.|+++.+..
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTT
T ss_pred eecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccchh-------hccccccceeeEEEeecccc
Confidence 999987 8999999999999 4454 5665 89999999999999887531 24445555 7777776554
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2e-21 Score=218.41 Aligned_cols=307 Identities=16% Similarity=0.162 Sum_probs=215.9
Q ss_pred cCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCC
Q 048126 486 EAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (863)
Q Consensus 486 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (863)
....+..+++++.|++++|.+.+++.+..+++|++|++++|.++.++ ++.+++|++|++++|. +..+| ++++++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred cccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 33456678899999999999988888889999999999999988875 7889999999999995 44555 889999
Q ss_pred CCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceE
Q 048126 566 LEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMAL 645 (863)
Q Consensus 566 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L 645 (863)
|++|++++|.++.+| ++.+++|++|++++| .++.+| ++.+++|++|++.+|..... . .+..+++|+.|
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~----~--~~~~l~~L~~L 175 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITK----L--DVTPQTQLTTL 175 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCC----C--CCTTCTTCCEE
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcccc----c--ccccCCcCCEE
Confidence 999999999999886 889999999999998 567675 67899999999988865432 1 36778899999
Q ss_pred EEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCc
Q 048126 646 TITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHS 725 (863)
Q Consensus 646 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 725 (863)
+++.+....++ ....++|+.|.++++.- +.. .+..+++|+.|++++|.... ++ . ..+++
T Consensus 176 ~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l-~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~---------~~l~~ 234 (457)
T 3bz5_A 176 DCSFNKITELD-----VSQNKLLNRLNCDTNNI-TKL---DLNQNIQLTFLDCSSNKLTE-ID--V---------TPLTQ 234 (457)
T ss_dssp ECCSSCCCCCC-----CTTCTTCCEEECCSSCC-SCC---CCTTCTTCSEEECCSSCCSC-CC--C---------TTCTT
T ss_pred ECCCCccceec-----cccCCCCCEEECcCCcC-Cee---ccccCCCCCEEECcCCcccc-cC--c---------cccCC
Confidence 99888766543 22345888888887543 333 26678899999998875433 32 2 34788
Q ss_pred ccEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccC--
Q 048126 726 LHTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWE-- 803 (863)
Q Consensus 726 L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-- 803 (863)
|+.|++++| .++.+| .+.+++|+.|++++ +.++.+..... ... .......+++|+.|++++|+.+..++..
T Consensus 235 L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~-n~L~~L~l~~n-~~~---~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 235 LTYFDCSVN-PLTELD-VSTLSKLTTLHCIQ-TDLLEIDLTHN-TQL---IYFQAEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp CSEEECCSS-CCSCCC-CTTCTTCCEEECTT-CCCSCCCCTTC-TTC---CEEECTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred CCEEEeeCC-cCCCcC-HHHCCCCCEEeccC-CCCCEEECCCC-ccC---CcccccccccCCEEECCCCcccceeccCCC
Confidence 999999987 566665 56677777777665 33444311100 000 0112356788888888888766665531
Q ss_pred ------CCCCCCcceEeecCCCCCCCCCCCCCCCCCCceEEEc
Q 048126 804 ------ALAFPNLKEIRVEGCPKLFKLPLDSNSAKGCKVVIKG 840 (863)
Q Consensus 804 ------~~~~p~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~ 840 (863)
...+|+|+.|+++++ +++.+|+. ..++|+.+++.+
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N-~l~~l~l~-~l~~L~~L~l~~ 348 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNT-ELTELDVS-HNTKLKSLSCVN 348 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTC-CCSCCCCT-TCTTCSEEECCS
T ss_pred cceEechhhcccCCEEECCCC-cccccccc-cCCcCcEEECCC
Confidence 223455555555543 45555421 126666666654
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.5e-21 Score=229.35 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=113.0
Q ss_pred ccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCC
Q 048126 489 EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (863)
.+..++++++|++++|.+..++ .+..+++|++|++++|.++.+++..|+++++|++|++++|.+.+..|..++++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 4667788999999988887763 35788899999999998888877778889999999999985554444778889999
Q ss_pred CeEEccCCCcc--ccchhhhcCCCCCEEecCCccccCCCcHHHhhcCC---------------------------CCcEE
Q 048126 567 EHLDLSGTAIT--HLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFS---------------------------KLQVL 617 (863)
Q Consensus 567 ~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~---------------------------~L~~L 617 (863)
++|++++|.++ .+|..++++++|++|++++| .+..++...++.++ +|+.|
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 99999998887 47888889999999998887 44544433233333 44555
Q ss_pred EeeccccccCchhhHHHHHcCCccCceEEEEE
Q 048126 618 RILKSNVLFGGHQFLVEELMGMKHLMALTITL 649 (863)
Q Consensus 618 ~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 649 (863)
++.+|.... ...+..+.++++|+.+.+..
T Consensus 210 ~L~~n~~~~---~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 210 TLRGNFNSS---NIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp EEESCCSCH---HHHHHHHHTTTTCEEEEEEE
T ss_pred eccCCccch---hHHHHHhccccccccccccc
Confidence 555544321 23455566677666666543
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=3.2e-21 Score=213.26 Aligned_cols=295 Identities=17% Similarity=0.204 Sum_probs=228.9
Q ss_pred EEEEcCCCcccCcc--cccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCC
Q 048126 476 FLVHAGLGLTEAPE--IQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNH 551 (863)
Q Consensus 476 ~~~~~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 551 (863)
.+...+......+. +..+++++.|++.+|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 127 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN- 127 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-
Confidence 34444444444443 467789999999999998774 4688999999999999999999888999999999999999
Q ss_pred ccccCCcc-ccccCCCCeEEccCCCccccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCch
Q 048126 552 LLWKLPSG-ISTLVSLEHLDLSGTAITHLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGH 629 (863)
Q Consensus 552 ~~~~lp~~-i~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 629 (863)
.+..+|.. ++++++|++|++++|.++.++. .+..+++|++|++++| .++.++ ++.+++|++|++.++....
T Consensus 128 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~~--- 200 (390)
T 3o6n_A 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLST--- 200 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCSE---
T ss_pred ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecccccccc---
Confidence 45577766 5899999999999999998754 5899999999999998 556665 5688999999999886643
Q ss_pred hhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCccccccee
Q 048126 630 QFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQM 709 (863)
Q Consensus 630 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~ 709 (863)
+...++|+.|+++.+....++. ...++|+.|.+.++.-.. . ..+..+++|+.|++++|.. +.+.+
T Consensus 201 ------~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l-~~~~~ 265 (390)
T 3o6n_A 201 ------LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD-T--AWLLNYPGLVEVDLSYNEL-EKIMY 265 (390)
T ss_dssp ------EECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCC-CEEES
T ss_pred ------cCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcc-c--HHHcCCCCccEEECCCCcC-CCcCh
Confidence 3455689999998776554321 223589999998865433 2 4578899999999999854 33444
Q ss_pred ccccccccccccccCcccEEEEeccCCCCCCch-hhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccce
Q 048126 710 TVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTW-LVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQF 788 (863)
Q Consensus 710 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~ 788 (863)
..+ ..+++|++|+|++| .++.++. ...+|+|+.|+++++. ++.+ +.....+++|+.
T Consensus 266 ~~~--------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~-------------~~~~~~l~~L~~ 322 (390)
T 3o6n_A 266 HPF--------VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHV-------------ERNQPQFDRLEN 322 (390)
T ss_dssp GGG--------TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCC-------------GGGHHHHTTCSE
T ss_pred hHc--------cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceec-------------CccccccCcCCE
Confidence 443 34899999999998 5666653 4578999999999974 5544 224567899999
Q ss_pred eccCCCccccccccCCCCCCCcceEeecCCC
Q 048126 789 LSLENLRNLCCINWEALAFPNLKEIRVEGCP 819 (863)
Q Consensus 789 L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 819 (863)
|++++++ ++.++ ...+++|+.|+++++|
T Consensus 323 L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 323 LYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred EECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 9999964 66665 4568999999999864
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=9.1e-22 Score=236.79 Aligned_cols=284 Identities=14% Similarity=0.031 Sum_probs=130.4
Q ss_pred CCccEEEccCCCccccCCccccccCCCCeEEccCCCcc-ccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEE
Q 048126 540 PSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAIT-HLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLR 618 (863)
Q Consensus 540 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~ 618 (863)
++|++|++++|.+.+.+|..++++++|++|++++|.++ .+|..++++++|+.|++++|.....+|.. +..+++|++|+
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~ 472 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLI 472 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEE
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEE
Confidence 34444444444333344455555555555555555444 44445555555555555555332234443 44555555555
Q ss_pred eeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEE
Q 048126 619 ILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYV 698 (863)
Q Consensus 619 l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 698 (863)
+.+|.+... .+..+.++++|+.|+++.+..... ++......++|+.|+++++.-....+ ..+..+++|+.|++
T Consensus 473 L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 473 LDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE--IPKWIGRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDL 545 (768)
T ss_dssp CCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCEEECC-GGGGGCTTCCEEEC
T ss_pred ecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc--CChHHhcCCCCCEEECCCCcccCcCC-HHHcCCCCCCEEEC
Confidence 555544321 233345555555555554443210 01111122355555555543222221 33455566666666
Q ss_pred cCCcccccceecccccc-------------------------------------------------------------cc
Q 048126 699 AGRKHLEDFQMTVQRSS-------------------------------------------------------------VN 717 (863)
Q Consensus 699 ~~~~~~~~l~~~~~~~~-------------------------------------------------------------~~ 717 (863)
++|.....++..+.... ..
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 65543322222111000 00
Q ss_pred ccccccCcccEEEEeccCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCcc
Q 048126 718 QLARGFHSLHTVKVGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRN 796 (863)
Q Consensus 718 ~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 796 (863)
.....+++|+.|+|++|.--..+| .++.+++|+.|+|+++.....+ +..++.+++|+.|+|+++.-
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-------------p~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-------------PDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-------------CGGGGGCTTCCEEECCSSCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-------------ChHHhCCCCCCEEECCCCcc
Confidence 011224556666666653222333 4556666666666664322222 23455566666666666543
Q ss_pred ccccccCCCCCCCcceEeecCCCCCCCCCCCCCCCCCCceEEEccccc
Q 048126 797 LCCINWEALAFPNLKEIRVEGCPKLFKLPLDSNSAKGCKVVIKGEENW 844 (863)
Q Consensus 797 L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~~~~ 844 (863)
-..+|.....+++|+.|++++|+--..+|.+....++....+.|++.+
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 335555555566666666666533333554433333333434444333
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.2e-21 Score=226.67 Aligned_cols=281 Identities=17% Similarity=0.201 Sum_probs=223.1
Q ss_pred cccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCcc-ccccCCC
Q 048126 490 IQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSG-ISTLVSL 566 (863)
Q Consensus 490 ~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L 566 (863)
+..+++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|+|++|. +..+|.. ++++++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCC
Confidence 456789999999999998875 46899999999999999999999989999999999999995 4466655 5899999
Q ss_pred CeEEccCCCccccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceE
Q 048126 567 EHLDLSGTAITHLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMAL 645 (863)
Q Consensus 567 ~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L 645 (863)
++|+|++|.++.+|+ .++++++|++|++++| .+..++ ++.+++|++|++.+|.+.. +....+|+.|
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~~---------l~~~~~L~~L 216 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLST---------LAIPIAVEEL 216 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCSE---------EECCTTCSEE
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCcccc---------ccCCchhhee
Confidence 999999999997765 6999999999999998 567776 5678999999999886643 3456789999
Q ss_pred EEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCc
Q 048126 646 TITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHS 725 (863)
Q Consensus 646 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 725 (863)
+++.+....++. ...++|+.|.++++.-.. ...+..+++|+.|++++|... .+.+..+ ..+++
T Consensus 217 ~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~--------~~l~~ 279 (597)
T 3oja_B 217 DASHNSINVVRG-----PVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELE-KIMYHPF--------VKMQR 279 (597)
T ss_dssp ECCSSCCCEEEC-----SCCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCC-EEESGGG--------TTCSS
T ss_pred eccCCccccccc-----ccCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccC-CCCHHHh--------cCccC
Confidence 998776543321 223589999998875433 245788899999999997544 3444443 34899
Q ss_pred ccEEEEeccCCCCCCch-hhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCC
Q 048126 726 LHTVKVGFCFKLKDLTW-LVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEA 804 (863)
Q Consensus 726 L~~L~L~~c~~l~~l~~-l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~ 804 (863)
|+.|+|++| .+..+|. .+.+|+|+.|+|++|. +..+ +..+..+|+|+.|+|+++. +..++ .
T Consensus 280 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i-------------~~~~~~l~~L~~L~L~~N~-l~~~~--~ 341 (597)
T 3oja_B 280 LERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHV-------------ERNQPQFDRLENLYLDHNS-IVTLK--L 341 (597)
T ss_dssp CCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCC-------------GGGHHHHTTCSEEECCSSC-CCCCC--C
T ss_pred CCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCcc-------------CcccccCCCCCEEECCCCC-CCCcC--h
Confidence 999999998 5666663 4568999999999965 4444 2345679999999999964 55554 4
Q ss_pred CCCCCcceEeecCCC
Q 048126 805 LAFPNLKEIRVEGCP 819 (863)
Q Consensus 805 ~~~p~L~~L~i~~C~ 819 (863)
..+++|+.|+++++|
T Consensus 342 ~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 342 STHHTLKNLTLSHND 356 (597)
T ss_dssp CTTCCCSEEECCSSC
T ss_pred hhcCCCCEEEeeCCC
Confidence 568999999999875
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=1.2e-20 Score=219.12 Aligned_cols=118 Identities=25% Similarity=0.290 Sum_probs=94.9
Q ss_pred EEEcCCCcccCc--ccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCc
Q 048126 477 LVHAGLGLTEAP--EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHL 552 (863)
Q Consensus 477 ~~~~~~~~~~~~--~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 552 (863)
+...+......+ .+..+++++.|++++|.+..++ .+..+++|++|++++|.++.+|.. .+++|++|++++|.+
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDF 133 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCc
Confidence 333444444443 5778899999999999998873 368899999999999999998875 799999999999965
Q ss_pred cc-cCCccccccCCCCeEEccCCCccccchhhhcCCCC--CEEecCCccc
Q 048126 553 LW-KLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNL--KCLNLEYMYN 599 (863)
Q Consensus 553 ~~-~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L--~~L~l~~~~~ 599 (863)
.+ ..|..++++++|++|++++|.++.. .+..+++| ++|++++|..
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred cccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 44 3468999999999999999998753 45666666 9999999843
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.8e-21 Score=210.12 Aligned_cols=296 Identities=15% Similarity=0.115 Sum_probs=204.3
Q ss_pred cceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccC
Q 048126 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSG 573 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (863)
.+++.++++++.+..+|.. -.++|++|++++|.+..+++..|.++++|++|+|++|.+.+..|..++++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3678899999888877653 247899999999999999887799999999999999976666688999999999999999
Q ss_pred CCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChH
Q 048126 574 TAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWE 653 (863)
Q Consensus 574 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 653 (863)
|.++.+|..+. ++|++|++++| .+..+|...+.++++|++|++.+|.+... ...+..+..+ +|+.|+++.+...
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS--GFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG--GSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC--CCCcccccCC-ccCEEECcCCCCC
Confidence 99999998776 89999999998 66788877689999999999999877421 1223445555 7888888776654
Q ss_pred HHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEec
Q 048126 654 ALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGF 733 (863)
Q Consensus 654 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 733 (863)
.++. ...++|+.|+++++. ........+..+++|+.|++++|.. +.+.+..+ ..+++|++|+|++
T Consensus 186 ~l~~-----~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~~~~--------~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 186 GIPK-----DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSL--------SFLPTLRELHLDN 250 (332)
T ss_dssp SCCS-----SSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCC-CCCCTTGG--------GGCTTCCEEECCS
T ss_pred ccCc-----cccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcC-CcCChhHh--------hCCCCCCEEECCC
Confidence 4321 122577788877653 3333334566778888888887643 33333332 2477888888888
Q ss_pred cCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccc--cccccCCCCCCCc
Q 048126 734 CFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNL--CCINWEALAFPNL 810 (863)
Q Consensus 734 c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L--~~i~~~~~~~p~L 810 (863)
| .++.+| .+..+++|+.|+++++ .++.+....+.+. .....+++|+.|++.+++.. ...+.....+++|
T Consensus 251 N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~------~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 251 N-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPV------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322 (332)
T ss_dssp S-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCS------SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred C-cCeecChhhhcCccCCEEECCCC-CCCccChhHcccc------ccccccccccceEeecCcccccccCcccccccchh
Confidence 7 455665 4677788888888874 3555432111110 01123567777777776532 1112223346667
Q ss_pred ceEeecCCC
Q 048126 811 KEIRVEGCP 819 (863)
Q Consensus 811 ~~L~i~~C~ 819 (863)
+.|++.++.
T Consensus 323 ~~l~l~~n~ 331 (332)
T 2ft3_A 323 LAIQFGNYK 331 (332)
T ss_dssp TTEEC----
T ss_pred hhhhccccc
Confidence 777776653
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=2.3e-20 Score=227.04 Aligned_cols=334 Identities=14% Similarity=0.168 Sum_probs=213.1
Q ss_pred cEEEEcCCCcccCcccccccceEEEEeccccccccc--cCCCCCccceEEccCC-ccccccchhhhcCCCccEEEccCCC
Q 048126 475 NFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDN-SLKMIAGDFFQFMPSLRVFNMSNNH 551 (863)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~ 551 (863)
..+.+.+.+.+.+|. ..++++.|++++|.+..+. .+..+++|++|++++| .+..+++..|.++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 345556667777776 5579999999999998763 4689999999999999 5557767779999999999999997
Q ss_pred ccccCCccccccCCCCeEEccCCCccc-cchh--hhcCCCCCEEecCCccccCCC-cHHHhhcCCCCcEEEeeccccccC
Q 048126 552 LLWKLPSGISTLVSLEHLDLSGTAITH-LPIE--LQKLVNLKCLNLEYMYNLNQF-PRLVMSAFSKLQVLRILKSNVLFG 627 (863)
Q Consensus 552 ~~~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~l-p~~~~~~L~~L~~L~l~~~~~~~~ 627 (863)
+.+..|..++++++|++|+|++|.++. +|.. ++++++|++|++++|. +..+ |...++++++|++|++.+|.+...
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCee
Confidence 777779999999999999999999985 5665 8999999999999994 4444 333489999999999999877542
Q ss_pred chhhHHHHHcCCccCceEEEEEcChHHHHHH--hhhh--hhhhcceeeeeccccCCCc----------------------
Q 048126 628 GHQFLVEELMGMKHLMALTITLKSWEALQEL--LISQ--ELQRCTQSLFLRCFNDSKS---------------------- 681 (863)
Q Consensus 628 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l--~~~~--~~~~~L~~L~l~~~~~~~~---------------------- 681 (863)
. ...+..+.. ++|+.|+++.+........ .... -....|+.|+++++.-...
T Consensus 164 ~-~~~l~~l~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 164 C-EHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp C-SGGGHHHHH-CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred C-HHHcccccC-CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 1 112222211 5677777776543221000 0000 0001366666665421100
Q ss_pred -------------ccccchhh--cCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc--hhh
Q 048126 682 -------------LDIFCLAC--LHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT--WLV 744 (863)
Q Consensus 682 -------------~~~~~l~~--~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~ 744 (863)
.....+.. .++|+.|++++|... .+.+..+ ..+++|+.|+|++| .+..++ .+.
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~--------~~l~~L~~L~L~~n-~i~~~~~~~~~ 311 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVF--------ETLKDLKVLNLAYN-KINKIADEAFY 311 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCS--------SSCCCCCEEEEESC-CCCEECTTTTT
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCccc-ccChhhh--------hcCCCCCEEECCCC-cCCCCChHHhc
Confidence 00011111 257777777776433 2333332 34677777777776 344432 356
Q ss_pred ccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccC-CCCCCCcceEeecCCCCCCC
Q 048126 745 FAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWE-ALAFPNLKEIRVEGCPKLFK 823 (863)
Q Consensus 745 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~ 823 (863)
.+++|++|+++++. ++.+. +..+..+++|+.|+++++ .+..++.. ...+++|+.|++++| .++.
T Consensus 312 ~l~~L~~L~Ls~N~-l~~~~------------~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 376 (844)
T 3j0a_A 312 GLDNLQVLNLSYNL-LGELY------------SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTT 376 (844)
T ss_dssp TCSSCCEEEEESCC-CSCCC------------SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCC
T ss_pred CCCCCCEEECCCCC-CCccC------------HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCc
Confidence 67777777777753 33331 234556667777777664 44444432 334666666666664 4555
Q ss_pred CCCCCCCCCCCceEEEcc
Q 048126 824 LPLDSNSAKGCKVVIKGE 841 (863)
Q Consensus 824 lp~~~~~~~L~~l~i~~~ 841 (863)
+|. .++|+.+.+.++
T Consensus 377 i~~---~~~L~~L~l~~N 391 (844)
T 3j0a_A 377 IHF---IPSIPDIFLSGN 391 (844)
T ss_dssp CSS---CCSCSEEEEESC
T ss_pred ccC---CCCcchhccCCC
Confidence 443 244555555543
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=6.6e-21 Score=215.60 Aligned_cols=311 Identities=13% Similarity=0.093 Sum_probs=219.4
Q ss_pred cccccccceEEEEecccccc-ccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCcc--ccc
Q 048126 488 PEIQNWRNVRRMSLMKNKIE-NLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSG--IST 562 (863)
Q Consensus 488 ~~~~~~~~lr~L~l~~~~~~-~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~--i~~ 562 (863)
..+..+++++.|++++|.+. .++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+.+..|.. +++
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 34677889999999998775 332 3578899999999999988887777899999999999999665545554 888
Q ss_pred cCCCCeEEccCCCcccc-chh-hhcCCCCCEEecCCccccCCCcHHHhhc------------------------------
Q 048126 563 LVSLEHLDLSGTAITHL-PIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSA------------------------------ 610 (863)
Q Consensus 563 l~~L~~L~L~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~------------------------------ 610 (863)
+++|++|++++|.++.+ |.. +.++++|++|++++|. +..++...+..
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 99999999999998876 544 7899999999999884 34443322333
Q ss_pred ----CCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHH----------HHHhhhhhhhhcceeeeeccc
Q 048126 611 ----FSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEAL----------QELLISQELQRCTQSLFLRCF 676 (863)
Q Consensus 611 ----L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~----------~~l~~~~~~~~~L~~L~l~~~ 676 (863)
+++|++|++.+|.+.... ..........++|+.|+++.+..... ..........++|+.|+++++
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESM-AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHH-HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred cccccceeeeEecCCCcccccc-hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 367888998888765321 11222333447888888765432110 000000011257999999886
Q ss_pred cCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc--hhhccCCCcEEEE
Q 048126 677 NDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT--WLVFAPSLKSIVV 754 (863)
Q Consensus 677 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l 754 (863)
.- .......+..+++|+.|++++|... .+.+..+ ..+++|++|+|++| .++.++ .++.+++|+.|+|
T Consensus 286 ~l-~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~--------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 286 KI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAF--------WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CC-CEECTTTTTTCTTCCEEECTTSCCC-EECTTTT--------TTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEEC
T ss_pred cc-cccchhhcccCCCCCEEECCCCccc-ccChhHh--------cCcccCCEEECCCC-ccCCcChhHhcCcccCCEEEC
Confidence 53 3333355788899999999997644 3444343 34899999999998 556553 4678999999999
Q ss_pred eccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCC-CCCCCcceEeecCCCCCCCCC
Q 048126 755 LSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEA-LAFPNLKEIRVEGCPKLFKLP 825 (863)
Q Consensus 755 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp 825 (863)
+++. ++.+. +..+..+++|++|+|+++ .++.++... ..+++|+.|++++++---..|
T Consensus 355 s~N~-l~~~~------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNH-IRALG------------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSC-CCEEC------------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCc-ccccC------------hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9964 44442 346778999999999995 677777643 568999999999875443344
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.6e-20 Score=202.66 Aligned_cols=295 Identities=16% Similarity=0.133 Sum_probs=203.6
Q ss_pred cceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccC
Q 048126 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSG 573 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (863)
.+++.++++++.+..+|.. -.++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..++++++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 3678899988888877653 347899999999999999987899999999999999966666689999999999999999
Q ss_pred CCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChH
Q 048126 574 TAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWE 653 (863)
Q Consensus 574 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 653 (863)
|.++.+|..+. ++|++|++++| .+..++...+.++++|++|++.+|..... ......+.++++|+.|+++.+...
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS--GIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG--GBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCcc--CcChhhccCCCCcCEEECCCCccc
Confidence 99999998765 79999999998 66788877789999999999998877532 123456778899999998877654
Q ss_pred HHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEec
Q 048126 654 ALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGF 733 (863)
Q Consensus 654 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 733 (863)
.++. ...++|+.|+++++. ........+..+++|+.|++++|.. +.+.+..+ ..+++|++|+|++
T Consensus 185 ~l~~-----~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~--------~~l~~L~~L~L~~ 249 (330)
T 1xku_A 185 TIPQ-----GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSI-SAVDNGSL--------ANTPHLRELHLNN 249 (330)
T ss_dssp SCCS-----SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCC-CEECTTTG--------GGSTTCCEEECCS
T ss_pred cCCc-----cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcC-ceeChhhc--------cCCCCCCEEECCC
Confidence 3321 112577777777654 3333334566677788888877643 32333222 2367788888877
Q ss_pred cCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccc---cCCCCCCC
Q 048126 734 CFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCIN---WEALAFPN 809 (863)
Q Consensus 734 c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~---~~~~~~p~ 809 (863)
| .++.+| .+..+++|+.|+++++. ++.+....+.+ ......++.|+.|++.+.+- ..+. .....+++
T Consensus 250 N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~------~~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 250 N-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCP------PGYNTKKASYSGVSLFSNPV-QYWEIQPSTFRCVYV 320 (330)
T ss_dssp S-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSC------SSCCTTSCCCSEEECCSSSS-CGGGSCGGGGTTCCC
T ss_pred C-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCC------cccccccccccceEeecCcc-cccccCccccccccc
Confidence 7 455554 46677778888877743 55443221111 01122356777777776542 2211 12233556
Q ss_pred cceEeecCC
Q 048126 810 LKEIRVEGC 818 (863)
Q Consensus 810 L~~L~i~~C 818 (863)
|+.++++++
T Consensus 321 l~~l~L~~N 329 (330)
T 1xku_A 321 RAAVQLGNY 329 (330)
T ss_dssp GGGEEC---
T ss_pred eeEEEeccc
Confidence 666666553
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=2.4e-20 Score=216.38 Aligned_cols=134 Identities=19% Similarity=0.288 Sum_probs=103.2
Q ss_pred ccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccc-cCCccccccCC
Q 048126 489 EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLW-KLPSGISTLVS 565 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~i~~l~~ 565 (863)
.+..++++++|++++|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|++++|.+.+ ..|..++++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 4677889999999999887765 36788999999999999998888888999999999999995543 45778889999
Q ss_pred CCeEEccCCC-ccccc-hhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccc
Q 048126 566 LEHLDLSGTA-ITHLP-IELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSN 623 (863)
Q Consensus 566 L~~L~L~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~ 623 (863)
|++|++++|. +..+| ..+.++++|++|++++|......|.. ++.+++|++|++..+.
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSB
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCc
Confidence 9999999986 66776 46888888888888887432234443 5556666666655544
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=225.29 Aligned_cols=322 Identities=15% Similarity=0.114 Sum_probs=232.6
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccC-CccccccCCCCeEEccCCC
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKL-PSGISTLVSLEHLDLSGTA 575 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 575 (863)
+..+.+++.+..+|. ..++|++|+|++|.++.+++..|.++++|++|+|++|.....+ |..++++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456667778888887 6689999999999999988888999999999999999666666 7889999999999999999
Q ss_pred cccc-chhhhcCCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChH
Q 048126 576 ITHL-PIELQKLVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWE 653 (863)
Q Consensus 576 l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 653 (863)
++.+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+... .....++++++|+.|+++.+...
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC---CCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc---ccchhHhhCCCCCEEECCCCcCC
Confidence 9976 78899999999999999943333443 3478999999999999987642 12246889999999999987653
Q ss_pred HHH--HHhhhhhhhhcceeeeeccccCCCcccccchhhcC------CCceEEEcCCcccccceeccccc-----------
Q 048126 654 ALQ--ELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLH------NLNKLYVAGRKHLEDFQMTVQRS----------- 714 (863)
Q Consensus 654 ~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~l~~~~~~~----------- 714 (863)
... .+... ..++|+.|.++++.-....+ ..+..++ +|+.|++++|......+......
T Consensus 162 ~~~~~~l~~l--~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 162 LVCEHELEPL--QGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCSGGGHHH--HHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred eeCHHHcccc--cCCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 221 11110 01589999998865433222 1222222 49999999874322111111000
Q ss_pred ------------------cccccccccCcccEEEEeccCCCCCCc--hhhccCCCcEEEEeccccchhhccccccccccC
Q 048126 715 ------------------SVNQLARGFHSLHTVKVGFCFKLKDLT--WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHH 774 (863)
Q Consensus 715 ------------------~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 774 (863)
...+.....++|+.|+|++|. +..++ .++.+++|+.|+|+++. +..+.
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~---------- 306 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIA---------- 306 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCC-CCEEC----------
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCc-CCCCC----------
Confidence 000011123789999999984 44442 46789999999999964 54442
Q ss_pred CCCCCCCcCCccceeccCCCcccccc-ccCCCCCCCcceEeecCCCCCCCCCCCCC-C-CCCCceEEEccc
Q 048126 775 HPERKKSVFAKLQFLSLENLRNLCCI-NWEALAFPNLKEIRVEGCPKLFKLPLDSN-S-AKGCKVVIKGEE 842 (863)
Q Consensus 775 ~~~~~~~~~p~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~-~-~~L~~l~i~~~~ 842 (863)
+..+..+++|+.|+|+++ .+..+ +.....+++|+.|++++| ++..+|.... . ++|+.+.+.++.
T Consensus 307 --~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 307 --DEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp --TTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred --hHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 345778999999999986 45554 445667999999999997 7888876433 2 899999999764
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=5e-20 Score=219.48 Aligned_cols=169 Identities=22% Similarity=0.256 Sum_probs=122.1
Q ss_pred EEEEcCCCcccCcccccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcc
Q 048126 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL 553 (863)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (863)
.+.+.+.....+|... .+++++|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|+|++|. +
T Consensus 8 ~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 85 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-L 85 (680)
T ss_dssp EEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-C
T ss_pred eeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-c
Confidence 3444444555555322 2678999999888877754 5788889999999988888888888889999999999884 4
Q ss_pred ccCCc-cccccCCCCeEEccCCCccccc-hhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhh
Q 048126 554 WKLPS-GISTLVSLEHLDLSGTAITHLP-IELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQF 631 (863)
Q Consensus 554 ~~lp~-~i~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~ 631 (863)
..+|. .++++++|++|++++|.++.+| ..++++++|++|++++| .+..++...++++++|++|++.+|.+...
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---- 160 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL---- 160 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB----
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccccc----
Confidence 45554 6888899999999998888776 46888899999999888 44555444467888888888888766432
Q ss_pred HHHHH--cCCccCceEEEEEcC
Q 048126 632 LVEEL--MGMKHLMALTITLKS 651 (863)
Q Consensus 632 ~~~~l--~~L~~L~~L~l~~~~ 651 (863)
....+ ..+++|+.|+++.+.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCC
T ss_pred CHHHhhccccccccEEECCCCc
Confidence 12222 244667777766543
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=4.9e-20 Score=219.56 Aligned_cols=247 Identities=14% Similarity=0.131 Sum_probs=177.7
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCc
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 576 (863)
+.++.+++.+..+|... .+++++|++++|.++.+++..|.++++|++|+|++|.+.+..|..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 45777777787777532 37999999999999999988899999999999999977666788999999999999999999
Q ss_pred cccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHH
Q 048126 577 THLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEAL 655 (863)
Q Consensus 577 ~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 655 (863)
+.+|. .++++++|++|++++| .+..+|...++++++|++|++.+|.+... .+..+.++++|+.|+++.+....+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSST----KLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCC----CCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCccccc----CchhhcccccCCEEEccCCccccc
Confidence 99987 5999999999999999 56778765589999999999999877542 334467899999999988765433
Q ss_pred HHHhhhhhhhhcceeeeeccccCCCcccccchhhc---------------------------CCCceEEEcCCcccccce
Q 048126 656 QELLISQELQRCTQSLFLRCFNDSKSLDIFCLACL---------------------------HNLNKLYVAGRKHLEDFQ 708 (863)
Q Consensus 656 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---------------------------~~L~~L~l~~~~~~~~l~ 708 (863)
..........++|+.|+++++.- .......+..+ ++|+.|++++|.... ..
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-~~ 238 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TS 238 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCC-CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-EC
T ss_pred CHHHhhccccccccEEECCCCcc-cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-cC
Confidence 22111111125889999987642 22222223222 456666666653222 22
Q ss_pred eccccccccccccccCcccEEEEeccCCCCCCc--hhhccCCCcEEEEeccc
Q 048126 709 MTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT--WLVFAPSLKSIVVLSCC 758 (863)
Q Consensus 709 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~~~ 758 (863)
+.++.. ...++|++|+|++|. ++.++ .++.+++|+.|+++++.
T Consensus 239 ~~~~~~------l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 239 NTTFLG------LKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TTTTGG------GGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC
T ss_pred hhHhhc------cCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCc
Confidence 222210 112448888888873 44433 46678888888888754
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=4.8e-20 Score=207.09 Aligned_cols=308 Identities=15% Similarity=0.118 Sum_probs=223.0
Q ss_pred EEEcCCCcccCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccC
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKL 556 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l 556 (863)
+...+......+.+..+++++.|++++|.+..++ +..+++|++|++++|.++.++ ++++++|++|++++|.+ ..+
T Consensus 47 L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l-~~l 121 (457)
T 3bz5_A 47 LDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL-TKL 121 (457)
T ss_dssp EECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCC-SCC
T ss_pred EEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcC-Cee
Confidence 3344445555567888899999999999999886 889999999999999998875 78999999999999954 456
Q ss_pred CccccccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHH
Q 048126 557 PSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEEL 636 (863)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l 636 (863)
| ++.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++.+|.+..- .+
T Consensus 122 ~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-------~l 187 (457)
T 3bz5_A 122 D--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-------DV 187 (457)
T ss_dssp C--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-------CC
T ss_pred c--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-------cc
Confidence 6 899999999999999999886 8899999999999997777774 67899999999999987642 17
Q ss_pred cCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccc
Q 048126 637 MGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSV 716 (863)
Q Consensus 637 ~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 716 (863)
..+++|+.|+++.+....++ ....++|+.|+++++.- +.++ +..+++|+.|++++|.. +.+++..+..-.
T Consensus 188 ~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l-~~ip---~~~l~~L~~L~l~~N~l-~~~~~~~l~~L~ 257 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKL-TEID---VTPLTQLTYFDCSVNPL-TELDVSTLSKLT 257 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCC-SCCC---CTTCTTCSEEECCSSCC-SCCCCTTCTTCC
T ss_pred ccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcc-cccC---ccccCCCCEEEeeCCcC-CCcCHHHCCCCC
Confidence 78899999999988766541 22346899999988653 3333 67789999999999754 333322110000
Q ss_pred cccccccCcccEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCcc
Q 048126 717 NQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRN 796 (863)
Q Consensus 717 ~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 796 (863)
...-...+|+.|++++|.....+| .+.+++|+.|++++|..++.+.... ..+. .-.+..+|+|+.|+++++ +
T Consensus 258 -~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~--~~L~---~L~l~~~~~L~~L~L~~N-~ 329 (457)
T 3bz5_A 258 -TLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA--AGIT---ELDLSQNPKLVYLYLNNT-E 329 (457)
T ss_dssp -EEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT--CCCS---CCCCTTCTTCCEEECTTC-C
T ss_pred -EEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC--Ccce---EechhhcccCCEEECCCC-c
Confidence 000011244555556665444454 4678999999999998766653210 0000 123556678888888773 5
Q ss_pred ccccccCCCCCCCcceEeecCCCCCCCC
Q 048126 797 LCCINWEALAFPNLKEIRVEGCPKLFKL 824 (863)
Q Consensus 797 L~~i~~~~~~~p~L~~L~i~~C~~L~~l 824 (863)
++.++ ...+++|+.|+++++ +++.+
T Consensus 330 l~~l~--l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 330 LTELD--VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSS-CCCBC
T ss_pred ccccc--cccCCcCcEEECCCC-CCCCc
Confidence 66653 556889999988763 55543
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.8e-20 Score=201.43 Aligned_cols=91 Identities=22% Similarity=0.346 Sum_probs=77.1
Q ss_pred CCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEEe
Q 048126 514 TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLN 593 (863)
Q Consensus 514 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 593 (863)
..++++.|++++|.+..+|+. +.++++|++|+|++|.+. .+|..++++++|++|++++|.++.+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 356788888888888888876 566999999999999544 889889999999999999999889999999999999999
Q ss_pred cCCccccCCCcHH
Q 048126 594 LEYMYNLNQFPRL 606 (863)
Q Consensus 594 l~~~~~l~~lp~~ 606 (863)
+++|..+..+|..
T Consensus 157 L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 157 IRACPELTELPEP 169 (328)
T ss_dssp EEEETTCCCCCSC
T ss_pred CCCCCCccccChh
Confidence 9998777777764
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=216.02 Aligned_cols=116 Identities=18% Similarity=0.127 Sum_probs=79.4
Q ss_pred hhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCC-CCCc-hhhccCCCcEEEEeccccchhhc
Q 048126 687 LACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKL-KDLT-WLVFAPSLKSIVVLSCCNMEQII 764 (863)
Q Consensus 687 l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l-~~l~-~l~~l~~L~~L~l~~~~~l~~i~ 764 (863)
+..+++|++|++++|.... ..+..+ ..+++|++|+|++|... ..+| .++.+++|+.|++++|. ++.+.
T Consensus 417 ~~~l~~L~~L~l~~n~l~~-~~~~~~--------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~ 486 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRV-AFNGIF--------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS 486 (570)
T ss_dssp TTTCTTCCEEECTTSCCEE-CCTTTT--------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC
T ss_pred hhcCCCCCEEeCcCCcccc-cchhhh--------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCC
Confidence 4455666666666654332 222222 35899999999998532 1243 57789999999999975 44431
Q ss_pred cccccccccCCCCCCCCcCCccceeccCCCccccccccC-CCCCCCcceEeecCCCCCCCCC
Q 048126 765 KAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWE-ALAFPNLKEIRVEGCPKLFKLP 825 (863)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp 825 (863)
+..+..+++|+.|+|+++ .++.++.. ...+++|+.|+++++|--...|
T Consensus 487 ------------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 487 ------------PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ------------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ------------hhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 345678999999999996 56666543 4568999999999975443344
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.3e-20 Score=199.26 Aligned_cols=129 Identities=19% Similarity=0.266 Sum_probs=73.7
Q ss_pred ceEEEEeccccccc---c-ccCCCCCccceEEccC-CccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeE
Q 048126 495 NVRRMSLMKNKIEN---L-SETPTCPHLLSLFLSD-NSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (863)
Q Consensus 495 ~lr~L~l~~~~~~~---l-~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (863)
+++.|+++++.+.+ + +.+..+++|++|++++ |.+....+..|.++++|++|+|++|.+.+.+|..++++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 56666666666543 2 2345566666666663 55543333335666666666666664444566666666666666
Q ss_pred EccCCCcc-ccchhhhcCCCCCEEecCCccccCCCcHHHhhcCC-CCcEEEeecccc
Q 048126 570 DLSGTAIT-HLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFS-KLQVLRILKSNV 624 (863)
Q Consensus 570 ~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~-~L~~L~l~~~~~ 624 (863)
++++|.++ .+|..+..+++|++|++++|.....+|.. +..++ +|++|++.+|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee
Confidence 66666665 55666666666666666666322245544 55555 666666655544
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=3.5e-19 Score=191.27 Aligned_cols=238 Identities=19% Similarity=0.255 Sum_probs=170.4
Q ss_pred cCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEE
Q 048126 538 FMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVL 617 (863)
Q Consensus 538 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L 617 (863)
...++++|+|++| .+..+|..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEE
Confidence 3578999999999 4568999999999999999999999999999999999999999999 56789986 8899999999
Q ss_pred EeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEE
Q 048126 618 RILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLY 697 (863)
Q Consensus 618 ~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 697 (863)
++.+|..... .+..+. .+.+. ..+..+++|+.|+
T Consensus 156 ~L~~n~~~~~----~p~~~~--------------------------------~~~~~----------~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 156 SIRACPELTE----LPEPLA--------------------------------STDAS----------GEHQGLVNLQSLR 189 (328)
T ss_dssp EEEEETTCCC----CCSCSE--------------------------------EEC-C----------CCEEESTTCCEEE
T ss_pred ECCCCCCccc----cChhHh--------------------------------hccch----------hhhccCCCCCEEE
Confidence 9998765432 110000 00000 1244567777777
Q ss_pred EcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCC
Q 048126 698 VAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHP 776 (863)
Q Consensus 698 l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 776 (863)
+++|... .++.. + ..+++|++|+|++|. +..+| .++.+++|+.|++++|+....+
T Consensus 190 L~~n~l~-~lp~~-l--------~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~------------- 245 (328)
T 4fcg_A 190 LEWTGIR-SLPAS-I--------ANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNY------------- 245 (328)
T ss_dssp EEEECCC-CCCGG-G--------GGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBC-------------
T ss_pred CcCCCcC-cchHh-h--------cCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhh-------------
Confidence 7776433 33322 2 247788888888874 44443 5677888888888887655544
Q ss_pred CCCCCcCCccceeccCCCccccccccCCCCCCCcceEeecCCCCCCCCCCCCCC-CCCCceEEEcccccccccee
Q 048126 777 ERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKLPLDSNS-AKGCKVVIKGEENWWKKATV 850 (863)
Q Consensus 777 ~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~-~~L~~l~i~~~~~~~~~l~w 850 (863)
+..+..+++|+.|+|++|..+..++.....+++|+.|++++|+.+..+|..+.. ++++.+.+. ..+...+.+
T Consensus 246 p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~--~~~~~~l~~ 318 (328)
T 4fcg_A 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP--PHLQAQLDQ 318 (328)
T ss_dssp CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC--GGGSCC---
T ss_pred HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC--HHHHHHHhh
Confidence 345667888888888888877777777777888888888888888888876655 666666554 344444433
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=3e-19 Score=192.75 Aligned_cols=285 Identities=16% Similarity=0.145 Sum_probs=206.7
Q ss_pred ccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCcccc-chhhhcCCCCCEEecC
Q 048126 517 HLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHL-PIELQKLVNLKCLNLE 595 (863)
Q Consensus 517 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~ 595 (863)
+++.++++++.++.+|..+ .++|++|++++|.+....|..++++++|++|++++|.++.+ |..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6999999999999998764 46899999999965555577899999999999999999977 7789999999999999
Q ss_pred CccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeecc
Q 048126 596 YMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRC 675 (863)
Q Consensus 596 ~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 675 (863)
+| .+..+|.. +. ++|++|++.+|.+... ....+.++++|+.|+++.+............... +|+.|++++
T Consensus 111 ~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 111 KN-HLVEIPPN-LP--SSLVELRIHDNRIRKV----PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp SS-CCCSCCSS-CC--TTCCEEECCSSCCCCC----CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CC-cCCccCcc-cc--ccCCEEECCCCccCcc----CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 98 67888875 22 8999999999887532 2334788999999999987764322111111112 788888877
Q ss_pred ccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc--hhhccCCCcEEE
Q 048126 676 FNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT--WLVFAPSLKSIV 753 (863)
Q Consensus 676 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~ 753 (863)
+.- ..++. .+ .++|++|++++|.. +.+.+..+ ..+++|++|+|++| .++.++ .++.+++|+.|+
T Consensus 182 n~l-~~l~~-~~--~~~L~~L~l~~n~i-~~~~~~~l--------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 182 AKL-TGIPK-DL--PETLNELHLDHNKI-QAIELEDL--------LRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp SBC-SSCCS-SS--CSSCSCCBCCSSCC-CCCCTTSS--------TTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred CCC-CccCc-cc--cCCCCEEECCCCcC-CccCHHHh--------cCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEE
Confidence 643 22221 12 27999999998754 33333333 34889999999998 566655 578899999999
Q ss_pred EeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCC-------CCCCcceEeecCCCCC--CCC
Q 048126 754 VLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEAL-------AFPNLKEIRVEGCPKL--FKL 824 (863)
Q Consensus 754 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~-------~~p~L~~L~i~~C~~L--~~l 824 (863)
++++ .++.+ +..+..+++|+.|+++++ .++.++.... .+++|+.|++.++|-. ...
T Consensus 248 L~~N-~l~~l-------------p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 248 LDNN-KLSRV-------------PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp CCSS-CCCBC-------------CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred CCCC-cCeec-------------ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccC
Confidence 9986 45554 335678999999999985 5666654321 1578999999998744 223
Q ss_pred CCCCCC-CCCCceEEEccc
Q 048126 825 PLDSNS-AKGCKVVIKGEE 842 (863)
Q Consensus 825 p~~~~~-~~L~~l~i~~~~ 842 (863)
|..... +.|+.+.+.+++
T Consensus 313 ~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGGTTBCCSTTEEC----
T ss_pred cccccccchhhhhhccccc
Confidence 333333 888888887664
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.2e-19 Score=191.72 Aligned_cols=255 Identities=14% Similarity=0.077 Sum_probs=176.8
Q ss_pred CccceEEccCCcccc--ccchhhhcCCCccEEEccC-CCccccCCccccccCCCCeEEccCCCcc-ccchhhhcCCCCCE
Q 048126 516 PHLLSLFLSDNSLKM--IAGDFFQFMPSLRVFNMSN-NHLLWKLPSGISTLVSLEHLDLSGTAIT-HLPIELQKLVNLKC 591 (863)
Q Consensus 516 ~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~L~~-~~~~~~lp~~i~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~ 591 (863)
.+++.|++++|.+.+ ..+..|.++++|++|+|++ |.+.+.+|..++++++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999885 3344589999999999995 7677789999999999999999999998 88999999999999
Q ss_pred EecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCc-cCceEEEEEcChHHHHHHhhhhhhhhccee
Q 048126 592 LNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMK-HLMALTITLKSWEALQELLISQELQRCTQS 670 (863)
Q Consensus 592 L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 670 (863)
|++++|.....+|.. ++.+++|++|++.+|.+.. ..+..+..++ +|+.|+++.+.....
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~~L~~L~L~~N~l~~~--------------- 189 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG----AIPDSYGSFSKLFTSMTISRNRLTGK--------------- 189 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE----ECCGGGGCCCTTCCEEECCSSEEEEE---------------
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC----cCCHHHhhhhhcCcEEECcCCeeecc---------------
Confidence 999999544467775 8999999999999998753 2455677777 888888875543210
Q ss_pred eeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCchhhccCCCc
Q 048126 671 LFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSLK 750 (863)
Q Consensus 671 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~ 750 (863)
....+..++ |+.|++++|.... ..+..+ ..+++|+.|+|++|..-..++.+..+++|+
T Consensus 190 ------------~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~ 247 (313)
T 1ogq_A 190 ------------IPPTFANLN-LAFVDLSRNMLEG-DASVLF--------GSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247 (313)
T ss_dssp ------------CCGGGGGCC-CSEEECCSSEEEE-CCGGGC--------CTTSCCSEEECCSSEECCBGGGCCCCTTCC
T ss_pred ------------CChHHhCCc-ccEEECcCCcccC-cCCHHH--------hcCCCCCEEECCCCceeeecCcccccCCCC
Confidence 001233333 6677776654322 222222 236677777777764333445556667777
Q ss_pred EEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCCCCCcceEeecCCCCCCCCCC
Q 048126 751 SIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCPKLFKLPL 826 (863)
Q Consensus 751 ~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 826 (863)
+|+++++.....+ +..+..+++|+.|+++++.--..++.. ..+++|+.|++.++|.+...|.
T Consensus 248 ~L~Ls~N~l~~~~-------------p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 248 GLDLRNNRIYGTL-------------PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp EEECCSSCCEECC-------------CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred EEECcCCcccCcC-------------ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 7777765422122 234556677777777765433344443 5567777777777766665554
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.3e-18 Score=187.47 Aligned_cols=263 Identities=17% Similarity=0.221 Sum_probs=163.2
Q ss_pred ccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCcccc-chhhhcCCCCCEEecC
Q 048126 517 HLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHL-PIELQKLVNLKCLNLE 595 (863)
Q Consensus 517 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~ 595 (863)
++++++++++.++.+|..+ .+.|++|+|++|.+.+..+..++++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7899999999999988753 36899999999965544455899999999999999999987 7889999999999999
Q ss_pred CccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeecc
Q 048126 596 YMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRC 675 (863)
Q Consensus 596 ~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 675 (863)
+| .++.+|... .++|++|++.+|.+.. .....+.++++|+.|+++.+...............++|+.|.+++
T Consensus 109 ~n-~l~~l~~~~---~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 109 KN-QLKELPEKM---PKTLQELRVHENEITK----VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp SS-CCSBCCSSC---CTTCCEEECCSSCCCB----BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CC-cCCccChhh---cccccEEECCCCcccc----cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 98 678888752 3799999999987763 245568889999999988765432111111112233555555555
Q ss_pred ccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc--hhhccCCCcEEE
Q 048126 676 FNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT--WLVFAPSLKSIV 753 (863)
Q Consensus 676 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~ 753 (863)
+.- ..++. .+ .++|++|++++|. ++.+.+..+ ..+++|++|+|++| .++.++ .+..+++|+.|+
T Consensus 181 n~l-~~l~~-~~--~~~L~~L~l~~n~-l~~~~~~~~--------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 181 TNI-TTIPQ-GL--PPSLTELHLDGNK-ITKVDAASL--------KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp SCC-CSCCS-SC--CTTCSEEECTTSC-CCEECTGGG--------TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEE
T ss_pred Ccc-ccCCc-cc--cccCCEEECCCCc-CCccCHHHh--------cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEE
Confidence 332 11111 11 1456666665543 222222222 23555666666655 333332 345556666666
Q ss_pred EeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCC-------CCCCcceEeecCCC
Q 048126 754 VLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEAL-------AFPNLKEIRVEGCP 819 (863)
Q Consensus 754 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~-------~~p~L~~L~i~~C~ 819 (863)
++++. ++.+ +..+..+++|+.|+++++ .++.++.... ..++|+.|++.+.|
T Consensus 247 L~~N~-l~~l-------------p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 247 LNNNK-LVKV-------------PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCSSC-CSSC-------------CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCCc-CccC-------------ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 65542 3333 223445556666666553 3444332211 13455555555543
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=190.77 Aligned_cols=150 Identities=23% Similarity=0.262 Sum_probs=110.9
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCc
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 576 (863)
...+.+++.+..+|.. -.++|++|++++|.++.++...|.++++|++|++++|.+.+..|..++++++|++|++++|.+
T Consensus 34 ~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 34 GICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp SEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 3466677777777652 335888888888888888876788888888888888865555567788888888888888888
Q ss_pred cccchh-hhcCCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcC
Q 048126 577 THLPIE-LQKLVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKS 651 (863)
Q Consensus 577 ~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 651 (863)
+.+|.. ++++++|++|++++| .+..+|. ..++++++|++|++.+|..... .....+.++++|+.|+++.+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK---IQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE---ECTTTTTTCCEEEEEEEEETT
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc---cCHHHccCCCCCCEEECCCCC
Confidence 888876 788888888888888 5677776 4477888888888887743221 123345667777777777654
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=190.45 Aligned_cols=262 Identities=21% Similarity=0.247 Sum_probs=179.8
Q ss_pred cCCCcccCcccccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCC
Q 048126 480 AGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP 557 (863)
Q Consensus 480 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 557 (863)
.+...+.+|. .-.++++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|. +..+|
T Consensus 39 ~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 116 (353)
T 2z80_A 39 SSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLS 116 (353)
T ss_dssp CSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCC
T ss_pred CCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCC
Confidence 3444555553 223589999999999988765 6899999999999999999988889999999999999995 44666
Q ss_pred cc-ccccCCCCeEEccCCCccccch--hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHH
Q 048126 558 SG-ISTLVSLEHLDLSGTAITHLPI--ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVE 634 (863)
Q Consensus 558 ~~-i~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~ 634 (863)
.. ++++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...++++++|++|++.+|.+.. ..+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~ 192 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS----YEPK 192 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE----ECTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc----cCHH
Confidence 55 8999999999999999999987 689999999999999866777766558899999999999987753 2355
Q ss_pred HHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcc--cccchhhcCCCceEEEcCCcccccc---ee
Q 048126 635 ELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSL--DIFCLACLHNLNKLYVAGRKHLEDF---QM 709 (863)
Q Consensus 635 ~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~l---~~ 709 (863)
.+.++++|+.|+++.+....++.... ...++|+.|+++++.-.... .+......+.++.+++.++.....- .+
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFV--DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHH--HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhhhh--hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 67889999999999887765554221 22346777777664321111 1111222345555555543221100 01
Q ss_pred ccccccccccccccCcccEEEEeccCCCCCCch--hhccCCCcEEEEeccc
Q 048126 710 TVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTW--LVFAPSLKSIVVLSCC 758 (863)
Q Consensus 710 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~~~ 758 (863)
.++ ..+++|++|+|++| .++.+|. ++.+++|++|++++++
T Consensus 271 ~~l--------~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 271 KLL--------NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHH--------HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHH--------hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 111 23555666666655 3444442 3455556666555543
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=2.1e-18 Score=203.90 Aligned_cols=143 Identities=22% Similarity=0.268 Sum_probs=116.4
Q ss_pred EcCCCcccCcccccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccC
Q 048126 479 HAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKL 556 (863)
Q Consensus 479 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l 556 (863)
+.+.+++.+|..- .+++++|++++|.+..++. +..+++|++|+|++|.++.++++.|.++++|++|+|++|.+ ..+
T Consensus 38 c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l 115 (635)
T 4g8a_A 38 CMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSL 115 (635)
T ss_dssp CTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEE
T ss_pred CCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCC
Confidence 4445566665321 2479999999999988863 68899999999999999999998899999999999999954 455
Q ss_pred C-ccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCCccccCC--CcHHHhhcCCCCcEEEeeccccc
Q 048126 557 P-SGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQ--FPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 557 p-~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~--lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
| ..+++|.+|++|++++|.++.+|.. ++++++|++|++++| .+.. +|.. ++.+++|++|++.+|.+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCcccc
Confidence 5 5689999999999999999988764 899999999999998 4444 4553 788999999999887653
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=5e-18 Score=196.29 Aligned_cols=133 Identities=23% Similarity=0.243 Sum_probs=70.4
Q ss_pred cceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccC
Q 048126 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSG 573 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (863)
++++.|++++|.+..++. .+++|++|++++|.++.+|. .+++|++|+|++| .+..+|. .+.+|++|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence 456666666665555544 45556666666665555554 3555666666665 3334444 345566666666
Q ss_pred CCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcCh
Q 048126 574 TAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSW 652 (863)
Q Consensus 574 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 652 (863)
|.++.+|.. +++|++|++++| .+..+|. .+++|+.|++.+|.+..- + ..+++|+.|+++.|..
T Consensus 131 N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l-----~---~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 131 NQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL-----P---MLPSGLQELSVSDNQL 193 (622)
T ss_dssp SCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCC
T ss_pred CCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC-----c---ccCCCCcEEECCCCCC
Confidence 666555543 355666666655 4444443 234555566555544321 1 2345555555554443
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=2.6e-18 Score=203.08 Aligned_cols=114 Identities=21% Similarity=0.313 Sum_probs=97.5
Q ss_pred ccccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCC
Q 048126 489 EIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (863)
.+..+++|+.|++++|.+..++. +.++++|++|+|++|.++.+|+..|.++++|++|+|++|.+.+..|..++++++|
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 46788899999999999988854 6789999999999999999999889999999999999995543334568999999
Q ss_pred CeEEccCCCccc--cchhhhcCCCCCEEecCCccccCCC
Q 048126 567 EHLDLSGTAITH--LPIELQKLVNLKCLNLEYMYNLNQF 603 (863)
Q Consensus 567 ~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~l 603 (863)
++|++++|.++. +|..++.+++|++|++++| .+..+
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 188 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSI 188 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEE
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCc-ccccc
Confidence 999999999874 5788999999999999987 33433
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=1.2e-17 Score=187.31 Aligned_cols=157 Identities=25% Similarity=0.314 Sum_probs=89.3
Q ss_pred cceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccC
Q 048126 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSG 573 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (863)
++++.|++++|.+..++... ++|++|++++|.++.+| . |+++++|++|++++|. +..+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcC
Confidence 45666666666665554332 56666777666666665 2 6666667777776663 33455433 3666666666
Q ss_pred CCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChH
Q 048126 574 TAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWE 653 (863)
Q Consensus 574 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 653 (863)
|.++.+| .++++++|++|++++| .+..+|.. .++|++|++.+|.+..- + .++.+++|+.|+++.+...
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~~l-----p-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILEEL-----P-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCSSCCS
T ss_pred CcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCCcc-----c-ccCCCCCCCEEECCCCcCC
Confidence 6666666 4666666666666666 34445432 24666666666654311 1 2556666666666655443
Q ss_pred HHHHHhhhhhhhhcceeeeeccc
Q 048126 654 ALQELLISQELQRCTQSLFLRCF 676 (863)
Q Consensus 654 ~~~~l~~~~~~~~~L~~L~l~~~ 676 (863)
.++. ..++|+.|+++++
T Consensus 251 ~l~~------~~~~L~~L~l~~N 267 (454)
T 1jl5_A 251 TLPD------LPPSLEALNVRDN 267 (454)
T ss_dssp SCCS------CCTTCCEEECCSS
T ss_pred cccc------cccccCEEECCCC
Confidence 3221 1235666666554
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=1.6e-17 Score=186.34 Aligned_cols=116 Identities=22% Similarity=0.329 Sum_probs=51.5
Q ss_pred ceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC
Q 048126 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT 574 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (863)
+++.|++++|.+..++.. +++|++|++++|.+..++.. .++|++|++++|.+ ..+| .++++++|++|++++|
T Consensus 92 ~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS
T ss_pred CCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCC
Confidence 444455554444444321 24455555555444443321 13455555554422 2344 3444555555555555
Q ss_pred CccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeecccc
Q 048126 575 AITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 575 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 624 (863)
.++.+|..+ .+|++|++++| .+..+|. ++++++|++|++.+|.+
T Consensus 164 ~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 164 SLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSL 207 (454)
T ss_dssp CCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCC
T ss_pred cCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcC
Confidence 444444322 24455555444 3344442 44445555555444443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=3.3e-18 Score=182.32 Aligned_cols=243 Identities=19% Similarity=0.176 Sum_probs=148.1
Q ss_pred EEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcc--ccCCccccccCCCCeEEccCCC
Q 048126 498 RMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL--WKLPSGISTLVSLEHLDLSGTA 575 (863)
Q Consensus 498 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~L~~~~ 575 (863)
.++..++.+..+|. .-.++|++|++++|.++.++..+|.++++|++|+|++|.+. +..|..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 45556666666654 23367888888888888887777788888888888888443 2235666678888888888888
Q ss_pred ccccchhhhcCCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHH
Q 048126 576 ITHLPIELQKLVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEA 654 (863)
Q Consensus 576 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 654 (863)
+..+|..+..+++|++|++++| .+..++. ..+..+++|++|++.+|.+... ....+.++++|+.|+++.+....
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEEC----STTTTTTCTTCCEEECTTCEEGG
T ss_pred cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCcc----chhhcccCcCCCEEECCCCcccc
Confidence 8888877888888888888887 4555553 3367778888888877765421 22234455555555554332110
Q ss_pred HHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEecc
Q 048126 655 LQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFC 734 (863)
Q Consensus 655 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 734 (863)
......+..+++|++|++++|.. +.+.+..+ ..+++|++|+|++|
T Consensus 165 --------------------------~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~--------~~l~~L~~L~L~~N 209 (306)
T 2z66_A 165 --------------------------NFLPDIFTELRNLTFLDLSQCQL-EQLSPTAF--------NSLSSLQVLNMSHN 209 (306)
T ss_dssp --------------------------GEECSCCTTCTTCCEEECTTSCC-CEECTTTT--------TTCTTCCEEECTTS
T ss_pred --------------------------ccchhHHhhCcCCCEEECCCCCc-CCcCHHHh--------cCCCCCCEEECCCC
Confidence 00112344566777777776543 32333332 23667777777776
Q ss_pred CCCCCCc--hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCC-ccceeccCCCc
Q 048126 735 FKLKDLT--WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFA-KLQFLSLENLR 795 (863)
Q Consensus 735 ~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~ 795 (863)
.++.++ .+..+++|+.|+++++. +.... +..+..+| +|+.|+|++++
T Consensus 210 -~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~------------~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 210 -NFFSLDTFPYKCLNSLQVLDYSLNH-IMTSK------------KQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -CCSBCCSGGGTTCTTCCEEECTTSC-CCBCS------------SSSCCCCCTTCCEEECTTCC
T ss_pred -ccCccChhhccCcccCCEeECCCCC-CcccC------------HHHHHhhhccCCEEEccCCC
Confidence 344443 34566777777777653 33221 22344453 67777776643
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=2.6e-17 Score=185.48 Aligned_cols=241 Identities=19% Similarity=0.219 Sum_probs=159.3
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCc
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 576 (863)
+.++..+..+..+|.. -.++|++|++++|.++.+++..|.++++|++|+|++|.+....|..+.++++|++|+|++|.+
T Consensus 57 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 4555555555555532 235677777777777777666677777777777777755555556777777777777777777
Q ss_pred cccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHH
Q 048126 577 THLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEAL 655 (863)
Q Consensus 577 ~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 655 (863)
+.+|.. +..+++|++|++++| .+..+|...+.++++|++|++.+++..
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l------------------------------ 184 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKL------------------------------ 184 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTC------------------------------
T ss_pred CccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCc------------------------------
Confidence 776654 666777777777776 455666544566666666665543211
Q ss_pred HHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccC
Q 048126 656 QELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCF 735 (863)
Q Consensus 656 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 735 (863)
..++...+..+++|++|++++|... .+ +.. ..+++|+.|+|++|
T Consensus 185 ------------------------~~i~~~~~~~l~~L~~L~L~~n~l~-~~-~~~---------~~l~~L~~L~Ls~N- 228 (452)
T 3zyi_A 185 ------------------------EYISEGAFEGLFNLKYLNLGMCNIK-DM-PNL---------TPLVGLEELEMSGN- 228 (452)
T ss_dssp ------------------------CEECTTTTTTCTTCCEEECTTSCCS-SC-CCC---------TTCTTCCEEECTTS-
T ss_pred ------------------------cccChhhccCCCCCCEEECCCCccc-cc-ccc---------cccccccEEECcCC-
Confidence 1111123556789999999987543 33 222 34789999999987
Q ss_pred CCCCCc--hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCC-CCCCCcce
Q 048126 736 KLKDLT--WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEA-LAFPNLKE 812 (863)
Q Consensus 736 ~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~ 812 (863)
.++.++ .+..+++|+.|+++++. +..+. +..+..+++|+.|+|+++ +++.++... ..+++|+.
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIE------------RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTSC-CCEEC------------TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCE
T ss_pred cCcccCcccccCccCCCEEEeCCCc-CceEC------------HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCE
Confidence 455443 46788899999998854 44431 235667889999999885 666666543 45788888
Q ss_pred EeecCCC
Q 048126 813 IRVEGCP 819 (863)
Q Consensus 813 L~i~~C~ 819 (863)
|++.++|
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 8888764
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=4.9e-18 Score=191.48 Aligned_cols=238 Identities=21% Similarity=0.225 Sum_probs=177.1
Q ss_pred EEEcCCCcccCcccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccc
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLW 554 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (863)
+.+.+.....+|.. -.++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+..
T Consensus 59 v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 59 VVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred EEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence 44444455555532 2368999999999998773 46899999999999999999998889999999999999996554
Q ss_pred cCCccccccCCCCeEEccCCCccccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHH
Q 048126 555 KLPSGISTLVSLEHLDLSGTAITHLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLV 633 (863)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~ 633 (863)
..+..+.++++|++|+|++|.++.+|. .+.++++|++|++++|..+..+|...+.++++|++|++.+|.+...
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------ 211 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------ 211 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------
Confidence 444568999999999999999998876 5899999999999998888889887789999999999999876532
Q ss_pred HHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceecccc
Q 048126 634 EELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQR 713 (863)
Q Consensus 634 ~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~ 713 (863)
..+..+++|+.|+++.+.. .......+..+++|+.|++++|.. ..+.+..+
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l---------------------------~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~- 262 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHF---------------------------PEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAF- 262 (452)
T ss_dssp CCCTTCTTCCEEECTTSCC---------------------------SEECGGGGTTCTTCCEEECTTSCC-CEECTTTT-
T ss_pred ccccccccccEEECcCCcC---------------------------cccCcccccCccCCCEEEeCCCcC-ceECHHHh-
Confidence 1345555566555543322 222223466677888888877643 33333333
Q ss_pred ccccccccccCcccEEEEeccCCCCCCch--hhccCCCcEEEEeccc
Q 048126 714 SSVNQLARGFHSLHTVKVGFCFKLKDLTW--LVFAPSLKSIVVLSCC 758 (863)
Q Consensus 714 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~~~ 758 (863)
..+++|+.|+|++| .++.++. +..+++|+.|+|++++
T Consensus 263 -------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 -------DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -------TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -------cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 34778888888887 5666653 4567888888887754
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=1.9e-18 Score=202.34 Aligned_cols=251 Identities=13% Similarity=0.078 Sum_probs=153.1
Q ss_pred cccceEEEEeccccccccc-----c-CCCCCccceEEccCCcccccc----chhhhcCCCccEEEccCCCccccCCcccc
Q 048126 492 NWRNVRRMSLMKNKIENLS-----E-TPTCPHLLSLFLSDNSLKMIA----GDFFQFMPSLRVFNMSNNHLLWKLPSGIS 561 (863)
Q Consensus 492 ~~~~lr~L~l~~~~~~~l~-----~-~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 561 (863)
.+++++.|++.+|.+.... . ...+++|++|++++|.+..+. +..+.++++|++|++++| ....+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 5567778888777653321 1 145677888888777665222 233567778888888877 3445677777
Q ss_pred ccCCCCeEEccCCCc----cccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHc
Q 048126 562 TLVSLEHLDLSGTAI----THLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELM 637 (863)
Q Consensus 562 ~l~~L~~L~L~~~~l----~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 637 (863)
++++|++|++++... ...+..+..+++|+.|+++++ ....+|.. +..+++|++|++.+|.+.. ......+.
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~---~~~~~~~~ 315 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLET---EDHCTLIQ 315 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCH---HHHHHHHT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCH---HHHHHHHH
Confidence 778888888775321 133445666777777777665 33556653 6788899999998887432 22334467
Q ss_pred CCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeecc----------ccCCCcccccc-hhhcCCCceEEEcCCccccc
Q 048126 638 GMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRC----------FNDSKSLDIFC-LACLHNLNKLYVAGRKHLED 706 (863)
Q Consensus 638 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~ 706 (863)
.+++|+.|++. +... ...+.......++|+.|++.+ |+..+...+.. ...+++|++|++++ ..+++
T Consensus 316 ~~~~L~~L~L~-~~~~-~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~ 392 (592)
T 3ogk_B 316 KCPNLEVLETR-NVIG-DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITN 392 (592)
T ss_dssp TCTTCCEEEEE-GGGH-HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCH
T ss_pred hCcCCCEEecc-CccC-HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccH
Confidence 88899999888 3222 122222223345788998885 55554433322 34478888888844 34432
Q ss_pred ceeccccccccccccccCcccEEEEec---cCCCCCCc-------hhhccCCCcEEEEeccc
Q 048126 707 FQMTVQRSSVNQLARGFHSLHTVKVGF---CFKLKDLT-------WLVFAPSLKSIVVLSCC 758 (863)
Q Consensus 707 l~~~~~~~~~~~~~~~l~~L~~L~L~~---c~~l~~l~-------~l~~l~~L~~L~l~~~~ 758 (863)
..+..+. ..+++|++|++++ |+.++..| .+..+++|+.|+++.|.
T Consensus 393 ~~~~~l~-------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 393 ESLESIG-------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHH-------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHH-------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 2222221 2367788888874 44555432 13457778888877655
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=190.74 Aligned_cols=222 Identities=20% Similarity=0.218 Sum_probs=138.7
Q ss_pred cceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEc
Q 048126 494 RNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (863)
++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+....+..+..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46777777777766553 3466777777777777777776666777777777777777433223335677777777777
Q ss_pred cCCCccccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEc
Q 048126 572 SGTAITHLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLK 650 (863)
Q Consensus 572 ~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 650 (863)
++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++.+|.+..- ..+..+++|
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L-------- 209 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------PNLTPLIKL-------- 209 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------CCCTTCSSC--------
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------cccCCCccc--------
Confidence 7777776654 4667777777777776666666665566777777777776655321 123334444
Q ss_pred ChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEE
Q 048126 651 SWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVK 730 (863)
Q Consensus 651 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 730 (863)
+.|+|+++. ........+..+++|+.|++++|. ++.+.+..+ ..+++|+.|+
T Consensus 210 ------------------~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--------~~l~~L~~L~ 261 (440)
T 3zyj_A 210 ------------------DELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAF--------DNLQSLVEIN 261 (440)
T ss_dssp ------------------CEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTSS--------TTCTTCCEEE
T ss_pred ------------------CEEECCCCc-cCccChhhhccCccCCEEECCCCc-eeEEChhhh--------cCCCCCCEEE
Confidence 444444432 222222446667788888887764 333333333 2467788888
Q ss_pred EeccCCCCCCch--hhccCCCcEEEEeccc
Q 048126 731 VGFCFKLKDLTW--LVFAPSLKSIVVLSCC 758 (863)
Q Consensus 731 L~~c~~l~~l~~--l~~l~~L~~L~l~~~~ 758 (863)
|++| .++.++. +..+++|+.|+|++++
T Consensus 262 L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 262 LAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 8876 5666553 4567788888877744
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=4.6e-17 Score=182.78 Aligned_cols=241 Identities=16% Similarity=0.216 Sum_probs=149.4
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCc
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 576 (863)
+.++..+..+..+|.. -.++++.|++++|.+..+++..|.++++|++|+|++|.+....|..+.++++|++|+|++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 4455555555555432 225666666666666666655566666666666666644444445666666666666666666
Q ss_pred cccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHH
Q 048126 577 THLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEAL 655 (863)
Q Consensus 577 ~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 655 (863)
+.+|. .+..+++|++|++++| .+..+|...+.++++|++|++.+++.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~------------------------------- 172 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKR------------------------------- 172 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTT-------------------------------
T ss_pred CeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCC-------------------------------
Confidence 66654 3666666666666666 34555544455555555555543321
Q ss_pred HHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccC
Q 048126 656 QELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCF 735 (863)
Q Consensus 656 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 735 (863)
...+....+..+++|++|++++|.. +.+ +.. ..+++|++|+|++|
T Consensus 173 -----------------------l~~i~~~~~~~l~~L~~L~L~~n~l-~~~-~~~---------~~l~~L~~L~Ls~N- 217 (440)
T 3zyj_A 173 -----------------------LSYISEGAFEGLSNLRYLNLAMCNL-REI-PNL---------TPLIKLDELDLSGN- 217 (440)
T ss_dssp -----------------------CCEECTTTTTTCSSCCEEECTTSCC-SSC-CCC---------TTCSSCCEEECTTS-
T ss_pred -----------------------cceeCcchhhcccccCeecCCCCcC-ccc-ccc---------CCCcccCEEECCCC-
Confidence 1111112355678899999988743 333 222 34788999999887
Q ss_pred CCCCCc--hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCC-CCCCCcce
Q 048126 736 KLKDLT--WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEA-LAFPNLKE 812 (863)
Q Consensus 736 ~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~ 812 (863)
.++.++ .+..+++|+.|+++++ .++.+. +..+..+++|+.|+|+++ +++.++... ..+++|+.
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE------------RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTC-CCCEEC------------TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCE
T ss_pred ccCccChhhhccCccCCEEECCCC-ceeEEC------------hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCE
Confidence 455543 4667888888888885 354442 235667888888888885 666666543 45788888
Q ss_pred EeecCCC
Q 048126 813 IRVEGCP 819 (863)
Q Consensus 813 L~i~~C~ 819 (863)
|++.++|
T Consensus 284 L~L~~Np 290 (440)
T 3zyj_A 284 IHLHHNP 290 (440)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 8887754
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=4.1e-19 Score=190.12 Aligned_cols=262 Identities=15% Similarity=0.100 Sum_probs=147.6
Q ss_pred eEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccC
Q 048126 496 VRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSG 573 (863)
Q Consensus 496 lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (863)
+...++..+.+...+. +..+++|+.|++++|.+..+++..|.++++|++|+|++|.+.+ .+. +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhcCCCCEEECcC
Confidence 3444444444433211 2456778888888888888777778888888888888885443 332 77888888888888
Q ss_pred CCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChH
Q 048126 574 TAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWE 653 (863)
Q Consensus 574 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 653 (863)
|.++.+|. +++|++|++++| .+..++. ..+++|++|++.+|.+... ....+..+++|+.|+++.+...
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANN-NISRVSC---SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCCSG----GGBCTGGGSSEEEEECTTSCCC
T ss_pred CccccccC----CCCcCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCCCc----cchhhhccCCCCEEECCCCCCC
Confidence 88877663 378888888887 4555553 3467788888877766431 1122344455555555433322
Q ss_pred HHHHHhhhhhhhhcceeeeeccccCCCcccccch-hhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEe
Q 048126 654 ALQELLISQELQRCTQSLFLRCFNDSKSLDIFCL-ACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVG 732 (863)
Q Consensus 654 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~ 732 (863)
. .....+ ..+++|+.|++++|.... + +.. ..+++|++|+|+
T Consensus 158 ~---------------------------~~~~~~~~~l~~L~~L~L~~N~l~~-~-~~~---------~~l~~L~~L~Ls 199 (317)
T 3o53_A 158 T---------------------------VNFAELAASSDTLEHLNLQYNFIYD-V-KGQ---------VVFAKLKTLDLS 199 (317)
T ss_dssp E---------------------------EEGGGGGGGTTTCCEEECTTSCCCE-E-ECC---------CCCTTCCEEECC
T ss_pred c---------------------------ccHHHHhhccCcCCEEECCCCcCcc-c-ccc---------cccccCCEEECC
Confidence 1 111112 234566666666554222 2 111 125566666666
Q ss_pred ccCCCCCC-chhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccc-cccccCCCCCCCc
Q 048126 733 FCFKLKDL-TWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNL-CCINWEALAFPNL 810 (863)
Q Consensus 733 ~c~~l~~l-~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L-~~i~~~~~~~p~L 810 (863)
+| .++.+ +.+..+++|+.|+++++ .++.+ +..+..+++|+.|++++++-. ..++.....++.|
T Consensus 200 ~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l-------------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 200 SN-KLAFMGPEFQSAAGVTWISLRNN-KLVLI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp SS-CCCEECGGGGGGTTCSEEECTTS-CCCEE-------------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred CC-cCCcchhhhcccCcccEEECcCC-cccch-------------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 65 34433 23455666666666664 34333 223445566666666654433 1222223345566
Q ss_pred ceEeecCCCCCCCC
Q 048126 811 KEIRVEGCPKLFKL 824 (863)
Q Consensus 811 ~~L~i~~C~~L~~l 824 (863)
+.|++.+|+.++..
T Consensus 265 ~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 265 QTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred eEEECCCchhccCC
Confidence 66666555555543
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=6.7e-19 Score=188.44 Aligned_cols=266 Identities=15% Similarity=0.097 Sum_probs=193.2
Q ss_pred CccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEEecC
Q 048126 516 PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLE 595 (863)
Q Consensus 516 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 595 (863)
..+..++++.+.+...+...+..+++|++|+|++|.+.+..|..++++++|++|++++|.++.+++ +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 345666777787877777778888999999999996665566789999999999999999987775 9999999999999
Q ss_pred CccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeecc
Q 048126 596 YMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRC 675 (863)
Q Consensus 596 ~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 675 (863)
+| .+..+| .+++|++|++.+|.+.... ...++ +|+.|.+++
T Consensus 89 ~n-~l~~l~-----~~~~L~~L~l~~n~l~~~~-------~~~~~--------------------------~L~~L~l~~ 129 (317)
T 3o53_A 89 NN-YVQELL-----VGPSIETLHAANNNISRVS-------CSRGQ--------------------------GKKNIYLAN 129 (317)
T ss_dssp SS-EEEEEE-----ECTTCCEEECCSSCCSEEE-------ECCCS--------------------------SCEEEECCS
T ss_pred CC-cccccc-----CCCCcCEEECCCCccCCcC-------ccccC--------------------------CCCEEECCC
Confidence 98 456555 3489999999988764320 11233 445555544
Q ss_pred ccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCchhhccCCCcEEEEe
Q 048126 676 FNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTWLVFAPSLKSIVVL 755 (863)
Q Consensus 676 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~ 755 (863)
+. ........+..+++|+.|++++|.... +.+..+. ..+++|++|+|++| .++.++....+++|+.|+++
T Consensus 130 N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-------~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 130 NK-ITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELA-------ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLS 199 (317)
T ss_dssp SC-CCSGGGBCTGGGSSEEEEECTTSCCCE-EEGGGGG-------GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECC
T ss_pred CC-CCCccchhhhccCCCCEEECCCCCCCc-ccHHHHh-------hccCcCCEEECCCC-cCcccccccccccCCEEECC
Confidence 32 222222346678999999999975443 3333321 24799999999998 67777777779999999999
Q ss_pred ccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCCCCCcceEeecCCCCC-CCCCCCCCC-CCC
Q 048126 756 SCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIRVEGCPKL-FKLPLDSNS-AKG 833 (863)
Q Consensus 756 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L-~~lp~~~~~-~~L 833 (863)
++ .++.+ +..+..+++|+.|+++++ .++.++.....+++|+.|++++++-- ..+|..... +.|
T Consensus 200 ~N-~l~~l-------------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 200 SN-KLAFM-------------GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp SS-CCCEE-------------CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred CC-cCCcc-------------hhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 96 45554 224667899999999996 77788877778999999999997544 234432222 556
Q ss_pred CceEEEccccccc
Q 048126 834 CKVVIKGEENWWK 846 (863)
Q Consensus 834 ~~l~i~~~~~~~~ 846 (863)
+.+.+.+++.+..
T Consensus 265 ~~l~l~~~~~l~~ 277 (317)
T 3o53_A 265 QTVAKQTVKKLTG 277 (317)
T ss_dssp HHHHHHHHHHHHS
T ss_pred eEEECCCchhccC
Confidence 6666665544433
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=7.7e-17 Score=186.38 Aligned_cols=255 Identities=21% Similarity=0.211 Sum_probs=202.7
Q ss_pred ceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC
Q 048126 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT 574 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (863)
.++.|++++|.+..+|.... ++|++|++++|.++.+|. .+++|++|+|++|. +..+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC
Confidence 58899999999988876433 899999999999998887 47899999999994 567886 7899999999999
Q ss_pred CccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHH
Q 048126 575 AITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEA 654 (863)
Q Consensus 575 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 654 (863)
.++.+|. .+++|++|++++| .++.+|.. +++|++|++.+|.+..-. ..+.+|+.|.++.+....
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~--------~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLP--------ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSC
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcC--------CccCCCCEEECCCCCCCC
Confidence 9999997 6789999999998 67888863 589999999998775321 135788999998887665
Q ss_pred HHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEecc
Q 048126 655 LQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFC 734 (863)
Q Consensus 655 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 734 (863)
++ ...++|+.|+++++.- ..++ . .+++|+.|++++|.. +.++ ..+++|+.|+|++|
T Consensus 176 l~------~~~~~L~~L~Ls~N~l-~~l~--~--~~~~L~~L~L~~N~l-~~l~------------~~~~~L~~L~Ls~N 231 (622)
T 3g06_A 176 LP------MLPSGLQELSVSDNQL-ASLP--T--LPSELYKLWAYNNRL-TSLP------------ALPSGLKELIVSGN 231 (622)
T ss_dssp CC------CCCTTCCEEECCSSCC-SCCC--C--CCTTCCEEECCSSCC-SSCC------------CCCTTCCEEECCSS
T ss_pred Cc------ccCCCCcEEECCCCCC-CCCC--C--ccchhhEEECcCCcc-cccC------------CCCCCCCEEEccCC
Confidence 43 2346899999988653 3322 1 247999999998753 3222 12689999999998
Q ss_pred CCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCCCCCcceEe
Q 048126 735 FKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIR 814 (863)
Q Consensus 735 ~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~ 814 (863)
.++.+| ..+++|+.|+++++ .++.+ +. .+++|+.|+|+++ .++.++.....+++|+.|+
T Consensus 232 -~L~~lp--~~l~~L~~L~Ls~N-~L~~l-------------p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 232 -RLTSLP--VLPSELKELMVSGN-RLTSL-------------PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp -CCSCCC--CCCTTCCEEECCSS-CCSCC-------------CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEE
T ss_pred -ccCcCC--CCCCcCcEEECCCC-CCCcC-------------Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEE
Confidence 677777 56799999999996 45554 22 6789999999986 6778887777899999999
Q ss_pred ecCCC
Q 048126 815 VEGCP 819 (863)
Q Consensus 815 i~~C~ 819 (863)
+++|+
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 99875
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=1.6e-18 Score=185.13 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=113.5
Q ss_pred cceEEEEecccccccccc-CCCCCccceEEccCCcccc--ccchhhh-------cCCCccEEEccCCCccccCCccc--c
Q 048126 494 RNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKM--IAGDFFQ-------FMPSLRVFNMSNNHLLWKLPSGI--S 561 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~--~~~~~~~-------~l~~L~~L~L~~~~~~~~lp~~i--~ 561 (863)
++++.+++.+|.+ .+|. +.. .|+.|++++|.+.. ++.. +. ++++|++|+|++|.+.+.+|..+ +
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4566667777776 4443 222 28888888887743 3332 33 68899999999997666788876 8
Q ss_pred ccCCCCeEEccCCCccccchhhhcC-----CCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHH
Q 048126 562 TLVSLEHLDLSGTAITHLPIELQKL-----VNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEEL 636 (863)
Q Consensus 562 ~l~~L~~L~L~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l 636 (863)
.+++|++|++++|.++.+|..++.+ ++|++|++++| .+..++...++++++|++|++.+|...+. ...+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~ 195 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGE--RGLISAL 195 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHH--HHHHHHS
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcc--hHHHHHH
Confidence 8999999999999988888877777 89999999988 56777755588899999999988875421 1233444
Q ss_pred --cCCccCceEEEEEcChHHHHH
Q 048126 637 --MGMKHLMALTITLKSWEALQE 657 (863)
Q Consensus 637 --~~L~~L~~L~l~~~~~~~~~~ 657 (863)
..+++|+.|+++.+....++.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHH
T ss_pred HhccCCCCCEEECCCCcCcchHH
Confidence 778888888887776654433
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=7.7e-17 Score=169.71 Aligned_cols=219 Identities=18% Similarity=0.184 Sum_probs=144.3
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCC-
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA- 575 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~- 575 (863)
+.++..++.+..+|. ...++|+.|++++|.++.+++..|..+++|++|+|++|.+.+..|..++++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 455666666666653 234678888888888877777777888888888888885555557778888888888888885
Q ss_pred cccc-chhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHH
Q 048126 576 ITHL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEA 654 (863)
Q Consensus 576 l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 654 (863)
++.+ |..+..+++|++|++++| .+..++...+.++++|++|++.+|.+... ....+..+++|+.|+++.+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l-- 165 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRI-- 165 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCC--
T ss_pred ccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCccccc----CHhHhccCCCccEEECCCCcc--
Confidence 7766 556778888888888887 45556544467788888888877765422 112244555555555543321
Q ss_pred HHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEecc
Q 048126 655 LQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFC 734 (863)
Q Consensus 655 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 734 (863)
+..+...+..+++|+.|++++|.. ..+.+..+ ..+++|+.|+|++|
T Consensus 166 -------------------------~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~--------~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 166 -------------------------SSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAF--------RDLGRLMTLYLFAN 211 (285)
T ss_dssp -------------------------CEECTTTTTTCTTCCEEECCSSCC-CEECTTTT--------TTCTTCCEEECCSS
T ss_pred -------------------------cccCHHHhcCccccCEEECCCCcc-cccCHhHc--------cCcccccEeeCCCC
Confidence 111112355667888888887653 33333333 24778888888887
Q ss_pred CCCCCCc--hhhccCCCcEEEEeccc
Q 048126 735 FKLKDLT--WLVFAPSLKSIVVLSCC 758 (863)
Q Consensus 735 ~~l~~l~--~l~~l~~L~~L~l~~~~ 758 (863)
.++.++ .+..+++|+.|++++++
T Consensus 212 -~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 212 -NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred -cCCcCCHHHcccCcccCEEeccCCC
Confidence 555555 36678888888888754
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=4.5e-17 Score=173.48 Aligned_cols=239 Identities=20% Similarity=0.223 Sum_probs=173.0
Q ss_pred EEEcCCCcccCcccccccceEEEEecccccccccc--CCCCCccceEEccCCcccccc--chhhhcCCCccEEEccCCCc
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIA--GDFFQFMPSLRVFNMSNNHL 552 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~ 552 (863)
+...+...+.+|. .-.+++++|++++|.+..++. +..+++|++|++++|.+..+. +..+..+++|++|+|++| .
T Consensus 12 l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~ 89 (306)
T 2z66_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-G 89 (306)
T ss_dssp EECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-S
T ss_pred EEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-c
Confidence 3334444555553 223689999999999988875 578999999999999887653 334667999999999999 5
Q ss_pred cccCCccccccCCCCeEEccCCCccccch--hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchh
Q 048126 553 LWKLPSGISTLVSLEHLDLSGTAITHLPI--ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQ 630 (863)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~ 630 (863)
+..+|..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +...+...+..+++|++|++.+|.+...
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 165 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQEN--- 165 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGG---
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccc---
Confidence 55788889999999999999999998875 79999999999999994 4545444588999999999999876531
Q ss_pred hHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceec
Q 048126 631 FLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMT 710 (863)
Q Consensus 631 ~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~ 710 (863)
..+..+..+++|+.|+++.+.. .......+..+++|+.|++++|.... +.+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l---------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~ 217 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQL---------------------------EQLSPTAFNSLSSLQVLNMSHNNFFS-LDTF 217 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCC---------------------------CEECTTTTTTCTTCCEEECTTSCCSB-CCSG
T ss_pred cchhHHhhCcCCCEEECCCCCc---------------------------CCcCHHHhcCCCCCCEEECCCCccCc-cChh
Confidence 1233455666666666654322 12222345667888888888875432 3332
Q ss_pred cccccccccccccCcccEEEEeccCCCCCC-c-hhhccC-CCcEEEEeccc
Q 048126 711 VQRSSVNQLARGFHSLHTVKVGFCFKLKDL-T-WLVFAP-SLKSIVVLSCC 758 (863)
Q Consensus 711 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~-~L~~L~l~~~~ 758 (863)
.+ ..+++|+.|+|++|. +... + .+..+| +|+.|++++++
T Consensus 218 ~~--------~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 218 PY--------KCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GG--------TTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hc--------cCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 22 347889999998884 4433 2 355664 88999988855
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=5.3e-17 Score=190.06 Aligned_cols=309 Identities=16% Similarity=0.146 Sum_probs=210.9
Q ss_pred ccccceEEEEecccccccc-----cc-CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcc---ccCCcccc
Q 048126 491 QNWRNVRRMSLMKNKIENL-----SE-TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL---WKLPSGIS 561 (863)
Q Consensus 491 ~~~~~lr~L~l~~~~~~~l-----~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~---~~lp~~i~ 561 (863)
..+++++.|++++|.+..+ +. ...+++|++|++++|.+..++ ..+.++++|++|+++++... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 3567899999999887632 22 257899999999999888877 55899999999999864222 34566788
Q ss_pred ccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCc-HHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCc
Q 048126 562 TLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFP-RLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMK 640 (863)
Q Consensus 562 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 640 (863)
.+++|+.|+++++....+|..+..+++|++|++++|. +.... ..++.++++|++|++..+ ... .....-...++
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~~---~~l~~~~~~~~ 342 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IGD---RGLEVLAQYCK 342 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHH---HHHHHHHHHCT
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cCH---HHHHHHHHhCC
Confidence 9999999999998777899999999999999999985 33221 233688999999999833 221 22333346788
Q ss_pred cCceEEEEE----------cChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhh-cCCCceEEEcC---Cccccc
Q 048126 641 HLMALTITL----------KSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLAC-LHNLNKLYVAG---RKHLED 706 (863)
Q Consensus 641 ~L~~L~l~~----------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~---~~~~~~ 706 (863)
+|+.|++.. +.......+.......++|+.|.+ .++..+...+..+.. +++|+.|++++ |+.+++
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 999999993 222111222222233568999999 445555544444544 88999999984 445543
Q ss_pred ceec-cccccccccccccCcccEEEEeccCC-CCC--Cchhh-ccCCCcEEEEeccccchhhccccccccccCCCCCCCC
Q 048126 707 FQMT-VQRSSVNQLARGFHSLHTVKVGFCFK-LKD--LTWLV-FAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKS 781 (863)
Q Consensus 707 l~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~-l~~--l~~l~-~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~ 781 (863)
.+.+ .+. .....+++|++|+|+.|.. +.. +..++ .+++|+.|+|++|. +.+... .....
T Consensus 422 ~p~~~~~~----~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-----------~~~~~ 485 (592)
T 3ogk_B 422 LPLDNGVR----SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL-----------MEFSR 485 (592)
T ss_dssp CCCHHHHH----HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH-----------HHHHT
T ss_pred chHHHHHH----HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH-----------HHHHh
Confidence 2111 000 0013489999999988753 222 22333 48999999999875 443211 12345
Q ss_pred cCCccceeccCCCccccc--cccCCCCCCCcceEeecCCCCCCCC
Q 048126 782 VFAKLQFLSLENLRNLCC--INWEALAFPNLKEIRVEGCPKLFKL 824 (863)
Q Consensus 782 ~~p~L~~L~l~~~~~L~~--i~~~~~~~p~L~~L~i~~C~~L~~l 824 (863)
.+++|+.|+|++|+ ++. ++.....+|+|+.|++++|+ ++..
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 68999999999997 543 22222358999999999997 6654
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=8.9e-17 Score=169.24 Aligned_cols=215 Identities=20% Similarity=0.237 Sum_probs=164.7
Q ss_pred EcCCCcccCcccccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccC
Q 048126 479 HAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKL 556 (863)
Q Consensus 479 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l 556 (863)
..+.....+|. ...+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++|..+..+
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred cCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 33444444443 234689999999999988763 688999999999999999997777999999999999999635555
Q ss_pred -CccccccCCCCeEEccCCCcccc-chhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHH
Q 048126 557 -PSGISTLVSLEHLDLSGTAITHL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVE 634 (863)
Q Consensus 557 -p~~i~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~ 634 (863)
|..+..+++|++|++++|.++.+ |..+.++++|++|++++| .+..+|...++.+++|++|++.+|.+... ...
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~ 171 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSV----PER 171 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEE----CTT
T ss_pred CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccccc----CHH
Confidence 78899999999999999999977 556899999999999999 66788876688999999999999876532 222
Q ss_pred HHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccc
Q 048126 635 ELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRS 714 (863)
Q Consensus 635 ~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~ 714 (863)
.+..+++|+.|+++.+.. .......+..+++|+.|++++|.. +.+++..+
T Consensus 172 ~~~~l~~L~~L~l~~n~l---------------------------~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~-- 221 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRV---------------------------AHVHPHAFRDLGRLMTLYLFANNL-SALPTEAL-- 221 (285)
T ss_dssp TTTTCTTCCEEECCSSCC---------------------------CEECTTTTTTCTTCCEEECCSSCC-SCCCHHHH--
T ss_pred HhcCccccCEEECCCCcc---------------------------cccCHhHccCcccccEeeCCCCcC-CcCCHHHc--
Confidence 356667777777654432 111123466678999999998744 33444433
Q ss_pred cccccccccCcccEEEEeccC
Q 048126 715 SVNQLARGFHSLHTVKVGFCF 735 (863)
Q Consensus 715 ~~~~~~~~l~~L~~L~L~~c~ 735 (863)
..+++|+.|+|++++
T Consensus 222 ------~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 222 ------APLRALQYLRLNDNP 236 (285)
T ss_dssp ------TTCTTCCEEECCSSC
T ss_pred ------ccCcccCEEeccCCC
Confidence 348899999999875
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=3e-17 Score=186.05 Aligned_cols=236 Identities=16% Similarity=0.119 Sum_probs=132.9
Q ss_pred CCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEEe
Q 048126 514 TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLN 593 (863)
Q Consensus 514 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 593 (863)
.+++|++|++++|.+..+++..|.++++|++|+|++|.+.+..| ++.+++|++|+|++|.++.+|.. ++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 45577788888777777776667777888888888775443333 77777788888888777766632 6777888
Q ss_pred cCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeee
Q 048126 594 LEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFL 673 (863)
Q Consensus 594 l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 673 (863)
+++| .+..+|. ..+++|++|++.+|.+... .+..++++++|+.|+++.+...
T Consensus 106 L~~N-~l~~~~~---~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~-------------------- 157 (487)
T 3oja_A 106 AANN-NISRVSC---SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEID-------------------- 157 (487)
T ss_dssp CCSS-CCCCEEE---CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCC--------------------
T ss_pred CcCC-cCCCCCc---cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCC--------------------
Confidence 8777 4555553 3467777777777765421 1222344444444444433221
Q ss_pred ccccCCCcccccchh-hcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCC-chhhccCCCcE
Q 048126 674 RCFNDSKSLDIFCLA-CLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDL-TWLVFAPSLKS 751 (863)
Q Consensus 674 ~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~ 751 (863)
......+. .+++|+.|++++|.... + +.. ..+++|+.|+|++| .++.+ +.++.+++|+.
T Consensus 158 -------~~~~~~l~~~l~~L~~L~Ls~N~l~~-~-~~~---------~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~ 218 (487)
T 3oja_A 158 -------TVNFAELAASSDTLEHLNLQYNFIYD-V-KGQ---------VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTW 218 (487)
T ss_dssp -------EEEGGGGGGGTTTCCEEECTTSCCCE-E-ECC---------CCCTTCCEEECCSS-CCCEECGGGGGGTTCSE
T ss_pred -------CcChHHHhhhCCcccEEecCCCcccc-c-ccc---------ccCCCCCEEECCCC-CCCCCCHhHcCCCCccE
Confidence 11111222 45666666666654322 2 111 12566666666665 34433 34556666666
Q ss_pred EEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccc-cccccCCCCCCCcceEeec
Q 048126 752 IVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNL-CCINWEALAFPNLKEIRVE 816 (863)
Q Consensus 752 L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L-~~i~~~~~~~p~L~~L~i~ 816 (863)
|+++++. +..+ +..+..+++|+.|++++++-. ..++.....++.|+.|.+.
T Consensus 219 L~Ls~N~-l~~l-------------p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 219 ISLRNNK-LVLI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTSC-CCEE-------------CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEecCCc-Cccc-------------chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6666633 3333 223445666666666665433 1222223345555555554
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=7.3e-16 Score=163.85 Aligned_cols=127 Identities=24% Similarity=0.362 Sum_probs=87.9
Q ss_pred cccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeE
Q 048126 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (863)
Q Consensus 490 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (863)
...+++++.|++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|+|++|. +..+| .++.+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence 34556777777777777777666777777777777777776665 6777777777777774 43444 56777777777
Q ss_pred EccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeecccc
Q 048126 570 DLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 570 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 624 (863)
++++|.++.+|. +..+++|++|++++| .+..++. ++.+++|++|++.+|.+
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcC
Confidence 777777777664 677777777777776 4555654 56667777777666544
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=2.7e-17 Score=186.22 Aligned_cols=315 Identities=16% Similarity=0.120 Sum_probs=206.4
Q ss_pred ccccceEEEEecccccccc--ccC-CCCC----ccceEEccCCccccc----cchhhhcCCCccEEEccCCCccccCCcc
Q 048126 491 QNWRNVRRMSLMKNKIENL--SET-PTCP----HLLSLFLSDNSLKMI----AGDFFQFMPSLRVFNMSNNHLLWKLPSG 559 (863)
Q Consensus 491 ~~~~~lr~L~l~~~~~~~l--~~~-~~~~----~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~lp~~ 559 (863)
..+++++.|++++|.+... ..+ ..++ +|++|++++|.+... .+..+..+++|++|+|++|.+....+..
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 4457899999999887542 111 2233 799999999987742 2455788999999999999654333333
Q ss_pred cc-----ccCCCCeEEccCCCccc-----cchhhhcCCCCCEEecCCccccCCCcHHHh-----hcCCCCcEEEeecccc
Q 048126 560 IS-----TLVSLEHLDLSGTAITH-----LPIELQKLVNLKCLNLEYMYNLNQFPRLVM-----SAFSKLQVLRILKSNV 624 (863)
Q Consensus 560 i~-----~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~-----~~L~~L~~L~l~~~~~ 624 (863)
+. .+++|++|++++|.++. ++..+..+++|++|++++|. +...+...+ ..+++|++|++.+|.+
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 33 25679999999998874 56778888999999999984 333221112 2356999999999987
Q ss_pred ccCchhhHHHHHcCCccCceEEEEEcChHHHH--HHhhhh-hhhhcceeeeeccccCCCccc----ccchhhcCCCceEE
Q 048126 625 LFGGHQFLVEELMGMKHLMALTITLKSWEALQ--ELLISQ-ELQRCTQSLFLRCFNDSKSLD----IFCLACLHNLNKLY 697 (863)
Q Consensus 625 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~--~l~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~ 697 (863)
...........+..+++|+.|+++.+...... .+.... ...++|+.|+++++. .+... ...+..+++|++|+
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEE
Confidence 65433345667788899999999988765422 222111 124689999999874 33321 13455689999999
Q ss_pred EcCCcccccceeccccccccccccccCcccEEEEeccCCCCCC------chhhccCCCcEEEEeccccchhhcccccccc
Q 048126 698 VAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDL------TWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQ 771 (863)
Q Consensus 698 l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 771 (863)
+++|.. .+..+..+.. ......++|++|+|++|. ++.. ..+..+++|+.|+++++ .+.+.......
T Consensus 291 Ls~n~i-~~~~~~~l~~---~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~-- 362 (461)
T 1z7x_W 291 LAGNEL-GDEGARLLCE---TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC-- 362 (461)
T ss_dssp CTTCCC-HHHHHHHHHH---HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH--
T ss_pred CCCCCC-chHHHHHHHH---HhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHH--
Confidence 998753 2211111110 000124699999999985 5432 24557799999999997 45544221000
Q ss_pred ccCCCCCCC-CcCCccceeccCCCcccc-----ccccCCCCCCCcceEeecCCCCCCC
Q 048126 772 LHHHPERKK-SVFAKLQFLSLENLRNLC-----CINWEALAFPNLKEIRVEGCPKLFK 823 (863)
Q Consensus 772 ~~~~~~~~~-~~~p~L~~L~l~~~~~L~-----~i~~~~~~~p~L~~L~i~~C~~L~~ 823 (863)
..+ ...++|+.|++++| .++ .++.....+++|++|++++| ++..
T Consensus 363 ------~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~ 412 (461)
T 1z7x_W 363 ------QGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGD 412 (461)
T ss_dssp ------HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCH
T ss_pred ------HHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCH
Confidence 011 12679999999997 444 34444445899999999987 4543
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=2.3e-17 Score=186.73 Aligned_cols=339 Identities=16% Similarity=0.095 Sum_probs=151.1
Q ss_pred ceEEEEeccccccccc--c-CCCCCccceEEccCCcccccc----chhhhcCCCccEEEccCCCccccCCcccc-ccC--
Q 048126 495 NVRRMSLMKNKIENLS--E-TPTCPHLLSLFLSDNSLKMIA----GDFFQFMPSLRVFNMSNNHLLWKLPSGIS-TLV-- 564 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~l~-- 564 (863)
+++.|+++++.+...+ . +..+++|++|++++|.+.... +..+..+++|++|+|++|.+....+..+. .+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4556666655553321 1 244556666666666554211 22345556666666666543322222222 233
Q ss_pred --CCCeEEccCCCcc-----ccchhhhcCCCCCEEecCCccccCCC-cH----HHhhcCCCCcEEEeeccccccCchhhH
Q 048126 565 --SLEHLDLSGTAIT-----HLPIELQKLVNLKCLNLEYMYNLNQF-PR----LVMSAFSKLQVLRILKSNVLFGGHQFL 632 (863)
Q Consensus 565 --~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~l-p~----~~~~~L~~L~~L~l~~~~~~~~~~~~~ 632 (863)
+|++|++++|.++ .+|..+.++++|++|++++|. +... +. ......++|++|++.+|.+........
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 4666666666555 345555666666666666552 2211 11 111123456666666555443322233
Q ss_pred HHHHcCCccCceEEEEEcChHHHH--HHhhhh-hhhhcceeeeeccccCCCcc---cccchhhcCCCceEEEcCCccccc
Q 048126 633 VEELMGMKHLMALTITLKSWEALQ--ELLISQ-ELQRCTQSLFLRCFNDSKSL---DIFCLACLHNLNKLYVAGRKHLED 706 (863)
Q Consensus 633 ~~~l~~L~~L~~L~l~~~~~~~~~--~l~~~~-~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~ 706 (863)
...+..+++|+.|+++.+...... .+.... ...++|+.|+++++.-.... -...+..+++|++|++++|. +.+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CCh
Confidence 444455556666666555433211 111100 01125556666554321110 01223345566666665553 211
Q ss_pred ceeccccccccccccccCcccEEEEeccCCCCC-----Cc-hhhccCCCcEEEEeccccchhhccccccc----------
Q 048126 707 FQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKD-----LT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLS---------- 770 (863)
Q Consensus 707 l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~---------- 770 (863)
.....+.+ .....+++|++|++++| .++. ++ .+..+++|++|+++++. +.+........
T Consensus 242 ~~~~~l~~---~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 242 VGMAELCP---GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp HHHHHHHH---HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCC
T ss_pred HHHHHHHH---HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccce
Confidence 10000000 00012445555555555 3333 11 23334555555555432 22110000000
Q ss_pred cccCC-----------CCCCCCcCCccceeccCCCccccccccC-----C-CCCCCcceEeecCCCCCC-----CCCCCC
Q 048126 771 QLHHH-----------PERKKSVFAKLQFLSLENLRNLCCINWE-----A-LAFPNLKEIRVEGCPKLF-----KLPLDS 828 (863)
Q Consensus 771 ~~~~~-----------~~~~~~~~p~L~~L~l~~~~~L~~i~~~-----~-~~~p~L~~L~i~~C~~L~-----~lp~~~ 828 (863)
.+... .+..+..+++|+.|+|+++ .+.+.... . ...++|+.|++++| +++ .+|...
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATL 394 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHH
Confidence 00000 0112334578888888876 34432111 0 12578999999887 566 455433
Q ss_pred C-CCCCCceEEEccc
Q 048126 829 N-SAKGCKVVIKGEE 842 (863)
Q Consensus 829 ~-~~~L~~l~i~~~~ 842 (863)
. .++|+.+++++++
T Consensus 395 ~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 395 LANHSLRELDLSNNC 409 (461)
T ss_dssp HHCCCCCEEECCSSS
T ss_pred HhCCCccEEECCCCC
Confidence 3 2788888888764
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=3e-17 Score=192.24 Aligned_cols=249 Identities=17% Similarity=0.154 Sum_probs=123.5
Q ss_pred cccceEEEEeccccccc-----cccC-CCCCccceEEccCCcccccc----chhhhcCCCccEEEccCCCccccCCcccc
Q 048126 492 NWRNVRRMSLMKNKIEN-----LSET-PTCPHLLSLFLSDNSLKMIA----GDFFQFMPSLRVFNMSNNHLLWKLPSGIS 561 (863)
Q Consensus 492 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 561 (863)
.+++++.|++.+|.+.. ++.+ ..+++|++|++++|. ..+. ...+.++++|++|++++|...+.+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 45566666666665432 2222 356667777776664 1121 12234456677777776644444666666
Q ss_pred ccCCCCeEEccCCC-------ccccchhhhcCCCCCEE-ecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHH
Q 048126 562 TLVSLEHLDLSGTA-------ITHLPIELQKLVNLKCL-NLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLV 633 (863)
Q Consensus 562 ~l~~L~~L~L~~~~-------l~~lp~~~~~l~~L~~L-~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~ 633 (863)
++++|++|+++.+. +..++..+.++++|+.| .+.+. ....+|.. +..+++|++|++.+|.+.. ....
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~-~~~~~~L~~L~L~~~~l~~---~~l~ 307 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAV-YSVCSRLTTLNLSYATVQS---YDLV 307 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGG-HHHHTTCCEEECTTCCCCH---HHHH
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHH-HHhhCCCCEEEccCCCCCH---HHHH
Confidence 66666666654432 22344445555555555 22222 11223332 3466777777777776331 2223
Q ss_pred HHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeecc--------ccCCCcccccchh-hcCCCceEEEcCCccc
Q 048126 634 EELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRC--------FNDSKSLDIFCLA-CLHNLNKLYVAGRKHL 704 (863)
Q Consensus 634 ~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~--------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~ 704 (863)
.-+.++++|+.|++..+ .. ...+.......++|+.|.+.+ +...+...+..+. .+++|++|.+.+ ..+
T Consensus 308 ~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l 384 (594)
T 2p1m_B 308 KLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQM 384 (594)
T ss_dssp HHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCC
T ss_pred HHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCc
Confidence 33567777777777755 21 122222222235677777743 2222222222222 356777775443 333
Q ss_pred ccceeccccccccccccccCcccEEEEe-----ccCCCCCCch-------hhccCCCcEEEEec
Q 048126 705 EDFQMTVQRSSVNQLARGFHSLHTVKVG-----FCFKLKDLTW-------LVFAPSLKSIVVLS 756 (863)
Q Consensus 705 ~~l~~~~~~~~~~~~~~~l~~L~~L~L~-----~c~~l~~l~~-------l~~l~~L~~L~l~~ 756 (863)
++....... ..+++|+.|+|+ +|..++..|. +..+++|+.|+|++
T Consensus 385 ~~~~~~~l~-------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 385 TNAALITIA-------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CHHHHHHHH-------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred CHHHHHHHH-------hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 321111111 235667777776 4555553331 33456666666644
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.6e-17 Score=186.55 Aligned_cols=240 Identities=18% Similarity=0.145 Sum_probs=175.1
Q ss_pred cccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeE
Q 048126 492 NWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (863)
Q Consensus 492 ~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (863)
.+++++.|++++|.+..++ .+..+++|++|+|++|.+...++ +..+++|++|+|++|. +..+| ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC----CCCCcCEE
Confidence 3458999999999998875 46899999999999999987776 8999999999999994 44444 34899999
Q ss_pred EccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHc-CCccCceEEEE
Q 048126 570 DLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELM-GMKHLMALTIT 648 (863)
Q Consensus 570 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~ 648 (863)
++++|.++.+|.. .+++|++|++++| .+..++...++.+++|++|++++|.+... .+..+. .+++|+.|+++
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV----NFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEE----EGGGGGGGTTTCCEEECT
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCc----ChHHHhhhCCcccEEecC
Confidence 9999999988753 5789999999999 56666554588999999999999887642 233333 56666666665
Q ss_pred EcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccE
Q 048126 649 LKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHT 728 (863)
Q Consensus 649 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~ 728 (863)
.+... .. .....+++|+.|++++|. ++.+++.+ ..+++|+.
T Consensus 178 ~N~l~---------------------------~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~---------~~l~~L~~ 218 (487)
T 3oja_A 178 YNFIY---------------------------DV--KGQVVFAKLKTLDLSSNK-LAFMGPEF---------QSAAGVTW 218 (487)
T ss_dssp TSCCC---------------------------EE--ECCCCCTTCCEEECCSSC-CCEECGGG---------GGGTTCSE
T ss_pred CCccc---------------------------cc--cccccCCCCCEEECCCCC-CCCCCHhH---------cCCCCccE
Confidence 44321 11 112346889999998875 44444443 24889999
Q ss_pred EEEeccCCCCCCc-hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccc
Q 048126 729 VKVGFCFKLKDLT-WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNL 797 (863)
Q Consensus 729 L~L~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 797 (863)
|+|++| .+..+| .++.+++|+.|++++++.....+ +..+..+++|+.|.+..+..+
T Consensus 219 L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~------------~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 219 ISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTL------------RDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp EECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHH------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred EEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcch------------HHHHHhCCCCcEEeccccccc
Confidence 999997 566665 46778999999999866431111 123456778888877644333
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.2e-16 Score=170.59 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=96.6
Q ss_pred eEEEEeccccccccccCCCC--CccceEEccCCccccccchhhhcCCCccEEEccCCCcccc-CCccccccCCCCeEEcc
Q 048126 496 VRRMSLMKNKIENLSETPTC--PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWK-LPSGISTLVSLEHLDLS 572 (863)
Q Consensus 496 lr~L~l~~~~~~~l~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~L~ 572 (863)
.++++++++.+.. ..+..+ ++++.|++++|.+...++. +..+++|++|++++|.+... +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4566666655431 112333 6777777877777666655 44677888888887754433 66677777888888888
Q ss_pred CCCcc-ccchhhhcCCCCCEEecCCccccCC--CcHHHhhcCCCCcEEEeecc-ccccCchhhHHHHHcCCc-cCceEEE
Q 048126 573 GTAIT-HLPIELQKLVNLKCLNLEYMYNLNQ--FPRLVMSAFSKLQVLRILKS-NVLFGGHQFLVEELMGMK-HLMALTI 647 (863)
Q Consensus 573 ~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~~L~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~-~L~~L~l 647 (863)
+|.++ ..|..+..+++|++|++++|..++. +|.. +.++++|++|++.+| .+.. ......+..++ +|+.|++
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~---~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE---KHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH---HHHHHHHHHSCTTCCEEEC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh---HHHHHHHHhcccCCCEEEe
Confidence 87776 5666777778888888887754442 4442 667778888887777 4431 12344456666 7777777
Q ss_pred EEc
Q 048126 648 TLK 650 (863)
Q Consensus 648 ~~~ 650 (863)
+.+
T Consensus 203 ~~~ 205 (336)
T 2ast_B 203 SGY 205 (336)
T ss_dssp CSC
T ss_pred CCC
Confidence 655
No 77
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=8e-15 Score=159.26 Aligned_cols=293 Identities=14% Similarity=0.095 Sum_probs=176.4
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc------CHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL------QLEKIQEKI 199 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~------~~~~~~~~i 199 (863)
..+|||+.++++|.+++..+ +++.|+|++|+|||||+++++++. . .+|+.+.... +...+...+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 56899999999999998754 799999999999999999999875 1 6788765442 556666666
Q ss_pred HHHhCCC--------------Ccc--ccCCChhHHHHHHHHHhcc-CcEEEEEeccCCccc--------c-ccccCCCCC
Q 048126 200 GRRIGFL--------------DES--WKNGSLEDKASDILRILSK-KKFLLLLDDIWERVD--------L-TKVGVPFPD 253 (863)
Q Consensus 200 ~~~l~~~--------------~~~--~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~--------~-~~~~~~l~~ 253 (863)
...+... ... ....+..+....+.+..+. ++++||+||++.... + ..+.... .
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~ 160 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-D 160 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-H
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-H
Confidence 6655320 000 0123445556666665543 499999999986432 1 1111111 1
Q ss_pred CCCCcEEEEecCchhhhhc-----------ccc-cceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCC
Q 048126 254 PENKSKIVFTTRFLEICGA-----------MKA-HEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAG 321 (863)
Q Consensus 254 ~~~gs~IivTtR~~~v~~~-----------~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 321 (863)
...+.++|+|++...+... .+. ...+.+.+|+.+|+.+++.+.+..... +--.+.+..|++.|+|
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVPENEIEEAVELLDG 237 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHHTT
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCC
Confidence 1246889999887643111 111 236899999999999999876533221 1124578899999999
Q ss_pred chhHHHHHHHHhcCCCChhHHH-HHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhccCCCCccccHHhH
Q 048126 322 LPLALITIGRAMTCKKTTQEWH-HAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCGLFPEDYRIRKSEL 400 (863)
Q Consensus 322 lPlai~~~~~~l~~~~~~~~w~-~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~l 400 (863)
+|+++..++..+....+...+. .+.+..... +...+. .+.+ + ++ ..+..+..+|. + ..+...+
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~---~l~~-~-~~-~~~~~l~~la~---g-~~~~~~l 301 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL------IMGELE---ELRR-R-SP-RYVDILRAIAL---G-YNRWSLI 301 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHH---HHHH-H-CH-HHHHHHHHHHT---T-CCSHHHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHHHH------HHHHHH---HHHh-C-Ch-hHHHHHHHHHh---C-CCCHHHH
Confidence 9999999987653212222221 111111000 000111 1112 2 45 67888888887 2 1344444
Q ss_pred HHHHHhcCCCCCcccchhhhhHHHHHHHHHHhccccccccccccccccceEEeehhHHHHHHH
Q 048126 401 IDCWIGEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEEGDIAEEKSGEHVVKMHDVIRDMVL 463 (863)
Q Consensus 401 i~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdli~d~a~ 463 (863)
....-+. .- . ........+++.|.+.+++.... .....-|++++++.+
T Consensus 302 ~~~~~~~-~~-~----~~~~~~~~~l~~L~~~gli~~~~---------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVK-GT-K----IPEPRLYALLENLKKMNWIVEED---------NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHT-TC-C----CCHHHHHHHHHHHHHTTSEEEET---------TEEEESSHHHHHHHT
T ss_pred HHHHHHH-hC-C----CCHHHHHHHHHHHHhCCCEEecC---------CEEEEecHHHHHHHc
Confidence 4332211 00 0 11244667899999999997652 223334778887654
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=8.3e-17 Score=171.71 Aligned_cols=246 Identities=17% Similarity=0.185 Sum_probs=171.3
Q ss_pred CCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcc-ccCCcccc-------ccCCCCeEEccCCCcc-ccchhh
Q 048126 513 PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL-WKLPSGIS-------TLVSLEHLDLSGTAIT-HLPIEL 583 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~-~~lp~~i~-------~l~~L~~L~L~~~~l~-~lp~~~ 583 (863)
...++|+.|++++|.+ .+|..+... |++|+|++|.+. ..+|..+. ++++|++|++++|.++ .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4567899999999998 777764443 999999999652 45777666 7999999999999998 688876
Q ss_pred --hcCCCCCEEecCCccccCCCcHHHhhcC-----CCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHH
Q 048126 584 --QKLVNLKCLNLEYMYNLNQFPRLVMSAF-----SKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQ 656 (863)
Q Consensus 584 --~~l~~L~~L~l~~~~~l~~lp~~~~~~L-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 656 (863)
..+++|++|++++| .+..+|.. ++.+ ++|++|++.+|.+... .+..++++++|+.|+++.+......
T Consensus 116 ~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 116 LEATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF----SCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp SSCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC----CTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred HHhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccc----hHHHhccCCCCCEEECCCCCcCcch
Confidence 89999999999999 56777754 6777 9999999999987642 3456788999999999877643221
Q ss_pred HHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccc--cceeccccccccccccccCcccEEEEecc
Q 048126 657 ELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLE--DFQMTVQRSSVNQLARGFHSLHTVKVGFC 734 (863)
Q Consensus 657 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 734 (863)
.+... ..+..+++|++|++++|.... .+..... ..+++|++|+|++|
T Consensus 190 ~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--------~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 190 GLISA-----------------------LCPLKFPTLQVLALRNAGMETPSGVCSALA--------AARVQLQGLDLSHN 238 (312)
T ss_dssp HHHHH-----------------------SCTTSCTTCCEEECTTSCCCCHHHHHHHHH--------HTTCCCSEEECTTS
T ss_pred HHHHH-----------------------HHhccCCCCCEEECCCCcCcchHHHHHHHH--------hcCCCCCEEECCCC
Confidence 11110 012445777777777764321 1111111 23578888888877
Q ss_pred CCCCCC---chhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCCCCCcc
Q 048126 735 FKLKDL---TWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLK 811 (863)
Q Consensus 735 ~~l~~l---~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~ 811 (863)
.++.. +.+..+++|+.|+++++. ++.+ +.... ++|+.|+++++ .++.++. ...+++|+
T Consensus 239 -~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~i-------------p~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 239 -SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQV-------------PKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVG 299 (312)
T ss_dssp -CCCSSCCCSCCCCCTTCCEEECTTSC-CSSC-------------CSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEE
T ss_pred -cCCcccchhhhhhcCCCCEEECCCCc-cChh-------------hhhcc--CCceEEECCCC-CCCCChh-HhhCCCCC
Confidence 34442 234456888888888854 4444 12222 78888888874 6676655 56688888
Q ss_pred eEeecCC
Q 048126 812 EIRVEGC 818 (863)
Q Consensus 812 ~L~i~~C 818 (863)
.|+++++
T Consensus 300 ~L~L~~N 306 (312)
T 1wwl_A 300 NLSLKGN 306 (312)
T ss_dssp EEECTTC
T ss_pred EEeccCC
Confidence 8888775
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=9.4e-16 Score=156.77 Aligned_cols=112 Identities=21% Similarity=0.341 Sum_probs=76.1
Q ss_pred ccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCC-ccccccCCCCeEEccC-CCccccch-h
Q 048126 506 IENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP-SGISTLVSLEHLDLSG-TAITHLPI-E 582 (863)
Q Consensus 506 ~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~-~~l~~lp~-~ 582 (863)
+..+|. -.++|+.|++++|.++.+++..|.++++|++|++++|..++.+| ..+.++++|++|++++ |.++.+|. .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 444444 23467777777777777777667777777777777774244444 3667777777777777 77777764 4
Q ss_pred hhcCCCCCEEecCCccccCCCcHHHhhcCCCCc---EEEeecc
Q 048126 583 LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQ---VLRILKS 622 (863)
Q Consensus 583 ~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~---~L~l~~~ 622 (863)
+..+++|++|++++| .++.+|. ++.+++|+ +|++.+|
T Consensus 101 f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred hCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence 677777777777777 4566765 56666666 7777665
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=1.6e-15 Score=159.46 Aligned_cols=132 Identities=23% Similarity=0.245 Sum_probs=111.4
Q ss_pred cccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeE
Q 048126 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (863)
Q Consensus 490 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (863)
+..+++++.+++.++.+..+|... .++++.|++++|.+..+++..|.++++|++|+|++|. +..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEE
Confidence 455678899999999888876532 3789999999999998888889999999999999994 4455544 789999999
Q ss_pred EccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 570 DLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 570 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
++++|.++.+|..+..+++|++|++++| .++.+|...+.++++|++|++.+|.+.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 9999999999998999999999999998 678888666888999999999887664
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=2.4e-15 Score=157.44 Aligned_cols=128 Identities=22% Similarity=0.281 Sum_probs=72.6
Q ss_pred ceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEcc
Q 048126 495 NVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (863)
+++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+.+..|..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 4666666666655543 24555666666666666655555555666666666666664443344555666666666666
Q ss_pred CCCccccch-hhhcCCCCCEEecCCccccCC--CcHHHhhcCCCCcEEEeecccc
Q 048126 573 GTAITHLPI-ELQKLVNLKCLNLEYMYNLNQ--FPRLVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 573 ~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~--lp~~~~~~L~~L~~L~l~~~~~ 624 (863)
+|.+..++. .+..+++|++|++++| .+.. +|.. ++.+++|++|++.+|.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCC
Confidence 666655544 3556666666666665 3333 3443 55566666666655543
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=2.2e-15 Score=157.68 Aligned_cols=215 Identities=17% Similarity=0.122 Sum_probs=157.7
Q ss_pred cccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccc-h
Q 048126 503 KNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLP-I 581 (863)
Q Consensus 503 ~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp-~ 581 (863)
+..+..+|.. -.++|++|++++|.++.+++..|.++++|++|++++|.+....+..+.++++|++|++++|.++.+| .
T Consensus 16 ~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 16 ELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp TSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 3344444432 2357999999999999999877999999999999999655555668999999999999999999876 5
Q ss_pred hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhh
Q 048126 582 ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLIS 661 (863)
Q Consensus 582 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~ 661 (863)
.+.++++|++|++++| .+..++...++.+++|++|++.+|.+... ..+..+.++++|+.|+++.+....+.. ..
T Consensus 95 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~~L~Ls~N~l~~~~~--~~ 168 (276)
T 2z62_A 95 AFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYC--TD 168 (276)
T ss_dssp TTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCEECG--GG
T ss_pred hhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCcccee---cCchhhccCCCCCEEECCCCCCCcCCH--HH
Confidence 6999999999999998 56777664488999999999999887532 134567889999999999876543221 01
Q ss_pred hhhhhcce----eeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccC
Q 048126 662 QELQRCTQ----SLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCF 735 (863)
Q Consensus 662 ~~~~~~L~----~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 735 (863)
.....+|+ .|+++++. ....+...+. ..+|+.|++++|. ++.+++..+ ..+++|+.|+|++++
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~-~~~L~~L~L~~n~-l~~~~~~~~--------~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFK-EIRLKELALDTNQ-LKSVPDGIF--------DRLTSLQKIWLHTNP 235 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSC-CCEECTTSSC-SCCEEEEECCSSC-CSCCCTTTT--------TTCCSCCEEECCSSC
T ss_pred hhhhhhccccceeeecCCCc-ccccCccccC-CCcccEEECCCCc-eeecCHhHh--------cccccccEEEccCCc
Confidence 11122444 67776643 2333322222 3489999999976 444544433 348999999999874
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=6e-16 Score=161.48 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=107.1
Q ss_pred cccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCC
Q 048126 488 PEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (863)
Q Consensus 488 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (863)
.....+++++.|++.++.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..++++++|+
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 345566788899999888888887888899999999999887764 378888999999999855544455578889999
Q ss_pred eEEccCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 568 HLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 568 ~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
+|++++|.++.+|.. ++.+++|++|++++| .+..+|...++.+++|++|++.+|.+.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC
Confidence 999999988877665 688889999999888 667777665677888888888777553
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=9.2e-16 Score=165.72 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=160.8
Q ss_pred ccceEEccCCccccccchhhhcC--CCccEEEccCCCccccCCccccccCCCCeEEccCCCccc--cchhhhcCCCCCEE
Q 048126 517 HLLSLFLSDNSLKMIAGDFFQFM--PSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITH--LPIELQKLVNLKCL 592 (863)
Q Consensus 517 ~L~~L~l~~~~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L 592 (863)
.++.++++++.+. +..+..+ +++++|++++|.+. ..+..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEEC-SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCcccc-ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4789999998765 3456777 89999999999544 444457789999999999998873 88889999999999
Q ss_pred ecCCccccC-CCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEc-ChHHHHHHhhhhhhhhccee
Q 048126 593 NLEYMYNLN-QFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLK-SWEALQELLISQELQRCTQS 670 (863)
Q Consensus 593 ~l~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~ 670 (863)
++++|. +. ..|.. ++.+++|++|++.+|....+ ......+.++++|+.|+++.+ ..... .+.
T Consensus 124 ~L~~~~-l~~~~~~~-l~~~~~L~~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~----------- 187 (336)
T 2ast_B 124 SLEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFTEK-HVQ----------- 187 (336)
T ss_dssp ECTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCCHH-HHH-----------
T ss_pred eCcCcc-cCHHHHHH-HhcCCCCCEEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCcChH-HHH-----------
Confidence 999994 44 34443 78899999999998843321 123444667777887777766 43321 011
Q ss_pred eeeccccCCCcccccchhhcC-CCceEEEcCCc-cccc-ceeccccccccccccccCcccEEEEeccCCCCC--Cchhhc
Q 048126 671 LFLRCFNDSKSLDIFCLACLH-NLNKLYVAGRK-HLED-FQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKD--LTWLVF 745 (863)
Q Consensus 671 L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~~~~-l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~ 745 (863)
..+..++ +|++|++++|. .+++ ..+... ..+++|++|+|++|..++. ++.+..
T Consensus 188 --------------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--------~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 188 --------------VAVAHVSETITQLNLSGYRKNLQKSDLSTLV--------RRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp --------------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--------HHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred --------------HHHHhcccCCCEEEeCCCcccCCHHHHHHHH--------hhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 1234456 77777777764 2321 111111 2367788888877754432 446667
Q ss_pred cCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCCC-CCcceEeecCCCCCCCC
Q 048126 746 APSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALAF-PNLKEIRVEGCPKLFKL 824 (863)
Q Consensus 746 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~-p~L~~L~i~~C~~L~~l 824 (863)
+++|+.|++++|..+..... ..+..+|+|+.|++++| +..-.. ..+ ..|+.|++ +|++++..
T Consensus 246 l~~L~~L~l~~~~~~~~~~~------------~~l~~~~~L~~L~l~~~--i~~~~~--~~l~~~l~~L~l-~~n~l~~~ 308 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGI--VPDGTL--QLLKEALPHLQI-NCSHFTTI 308 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTS--SCTTCH--HHHHHHSTTSEE-SCCCSCCT
T ss_pred CCCCCEeeCCCCCCCCHHHH------------HHHhcCCCCCEEeccCc--cCHHHH--HHHHhhCcceEE-ecccCccc
Confidence 78888888888763322200 13456788888888877 222111 111 23555556 45677764
Q ss_pred C
Q 048126 825 P 825 (863)
Q Consensus 825 p 825 (863)
.
T Consensus 309 ~ 309 (336)
T 2ast_B 309 A 309 (336)
T ss_dssp T
T ss_pred c
Confidence 3
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=3.5e-15 Score=158.61 Aligned_cols=200 Identities=20% Similarity=0.275 Sum_probs=146.2
Q ss_pred ccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhh
Q 048126 504 NKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIEL 583 (863)
Q Consensus 504 ~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~ 583 (863)
+.+........+++|+.|++++|.+..++. +..+++|++|++++| .+..+|. +..+++|++|++++|.++.+| .+
T Consensus 29 ~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~ 103 (308)
T 1h6u_A 29 SNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AI 103 (308)
T ss_dssp SSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG
T ss_pred CCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hh
Confidence 333333344567889999999998888763 788999999999999 4556665 899999999999999998886 68
Q ss_pred hcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhh
Q 048126 584 QKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQE 663 (863)
Q Consensus 584 ~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~ 663 (863)
..+++|++|++++| .+..+|. +..+++|++|++.+|.+... ..+..+++|+.|+++.+..
T Consensus 104 ~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l----------- 163 (308)
T 1h6u_A 104 AGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQV----------- 163 (308)
T ss_dssp TTCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSSCC-----------
T ss_pred cCCCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcC------ccccCCCCccEEEccCCcC-----------
Confidence 89999999999998 5677775 78899999999988876532 1155555566555543321
Q ss_pred hhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCchh
Q 048126 664 LQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTWL 743 (863)
Q Consensus 664 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l 743 (863)
... ..+..+++|+.|++++|.. +.+.+ . ..+++|++|+|++| .+..++.+
T Consensus 164 ----------------~~~--~~l~~l~~L~~L~l~~n~l-~~~~~-l---------~~l~~L~~L~L~~N-~l~~~~~l 213 (308)
T 1h6u_A 164 ----------------SDL--TPLANLSKLTTLKADDNKI-SDISP-L---------ASLPNLIEVHLKNN-QISDVSPL 213 (308)
T ss_dssp ----------------CCC--GGGTTCTTCCEEECCSSCC-CCCGG-G---------GGCTTCCEEECTTS-CCCBCGGG
T ss_pred ----------------CCC--hhhcCCCCCCEEECCCCcc-CcChh-h---------cCCCCCCEEEccCC-ccCccccc
Confidence 111 1255678888888887643 32322 1 34788888888887 56777777
Q ss_pred hccCCCcEEEEeccc
Q 048126 744 VFAPSLKSIVVLSCC 758 (863)
Q Consensus 744 ~~l~~L~~L~l~~~~ 758 (863)
..+++|+.|++++++
T Consensus 214 ~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEEccCCe
Confidence 888888888888854
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=5e-15 Score=164.85 Aligned_cols=296 Identities=13% Similarity=0.081 Sum_probs=179.9
Q ss_pred CCccchhHHHHHHHHHh-c----C--CCccEEEE--EcCCCCcHHHHHHHHHhhhcCC--CCCCC-EEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCL-G----E--EQVGIIGL--YGMGGVGKTTLLTKINNKLLGA--PNDFD-VVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~F~-~~~wv~~s~~~~~~ 193 (863)
..++||+.+++++.+++ . . ...+.+.| +|++|+||||||+.+++..... ...|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999988 3 1 24456667 9999999999999999886210 01233 46788877777888
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhc--cCcEEEEEeccCCcc--------ccccccCCC---CCCC--CCc
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILS--KKKFLLLLDDIWERV--------DLTKVGVPF---PDPE--NKS 258 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--------~~~~~~~~l---~~~~--~gs 258 (863)
.++..++.+++...+. ...+..+....+.+.+. +++++||+||++... .+..+...+ +..+ ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999998764321 12344566667777665 679999999998632 122221111 1112 345
Q ss_pred EEEEecCchhhhhccc---------ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhC------Cch
Q 048126 259 KIVFTTRFLEICGAMK---------AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYA------GLP 323 (863)
Q Consensus 259 ~IivTtR~~~v~~~~~---------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------glP 323 (863)
.||+||+...+...+. ....+.+++|+.++++++|...+.... ....--.+....|++.|+ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 5888887654321111 112389999999999999987653221 111122567889999999 999
Q ss_pred hHHHHHHHHhc------CC--CChhHHHHHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhccCC--CCc
Q 048126 324 LALITIGRAMT------CK--KTTQEWHHAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCGLFP--EDY 393 (863)
Q Consensus 324 lai~~~~~~l~------~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp--~~~ 393 (863)
..+..+..... +. -+...+..++..... ...+.-++..||. +.+.++..++.+. .+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCC
Confidence 76665543321 11 123333333322110 1233446778988 7888888787653 223
Q ss_pred cccHHhHHHHHH--h-cCCCCCcccchhhhhHHHHHHHHHHhccccccc
Q 048126 394 RIRKSELIDCWI--G-EGFLDQYDRSGAYNEGYYIIGILLHACLLEEEE 439 (863)
Q Consensus 394 ~i~~~~li~~w~--a-~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 439 (863)
.++...+...+. + .- ... ..........+++.|...+++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTM-YNV--KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SBCHHHHHHHHHHHHHHH-SCC--CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CccHHHHHHHHHHHHHhh-cCC--CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 444444444332 2 10 000 0111244567899999999998754
No 87
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=3.9e-14 Score=154.26 Aligned_cols=289 Identities=14% Similarity=0.114 Sum_probs=169.2
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-----cCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-----LQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i~ 200 (863)
..+|||+.+++.|.+ +.. +++.|+|++|+|||||++++++.. . . ..+|+.+... .+...+...+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 568999999999999 765 699999999999999999999887 2 2 2578887643 24444444444
Q ss_pred HHhC--------------C----CCc----cc-----cCCChhHHHHHHHHHhccCcEEEEEeccCCcc-----cccccc
Q 048126 201 RRIG--------------F----LDE----SW-----KNGSLEDKASDILRILSKKKFLLLLDDIWERV-----DLTKVG 248 (863)
Q Consensus 201 ~~l~--------------~----~~~----~~-----~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----~~~~~~ 248 (863)
+.+. . ..+ .. ......++...+.+.-+ ++++||+||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 4331 0 000 00 01223334444433222 49999999997632 222221
Q ss_pred CCCCCCCCCcEEEEecCchhhhhc----------c-cc-cceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHH
Q 048126 249 VPFPDPENKSKIVFTTRFLEICGA----------M-KA-HEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVA 316 (863)
Q Consensus 249 ~~l~~~~~gs~IivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~ 316 (863)
..+.....+.++|+|+|....... . +. ...+.+.+|+.+|+.+++...+.... ..... ...|+
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~----~~~i~ 236 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDFKD----YEVVY 236 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCCCC----HHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCCCc----HHHHH
Confidence 111111246789999998653211 1 11 24789999999999999988654221 11112 28899
Q ss_pred HHhCCchhHHHHHHHHhcCCCChhHHHH-HHHHHHhcCCCCCCCcchhhhhhh-hhcC--CCCchhhHHHHhHhccCCCC
Q 048126 317 KEYAGLPLALITIGRAMTCKKTTQEWHH-AIQILRRSSSEFPGMGKEVYPLLK-FSYD--SLPDDTIRSCFLYCGLFPED 392 (863)
Q Consensus 317 ~~c~glPlai~~~~~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~~k~cfl~~~~fp~~ 392 (863)
+.|+|+|+++..++..+....+...|.. +.+.... .+...+. +.+. .+++ ..+..+..+|.-+
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~g~-- 303 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARK-RYLNIMRTLSKCG-- 303 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTTCB--
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccH-HHHHHHHHHHcCC--
Confidence 9999999999999887653333333321 1111100 1111111 1111 4666 6788888888721
Q ss_pred ccccHHhHHHHHH-hcCCCCCcccchhhhhHHHHHHHHHHhccccccccccccccccceEEe-ehhHHHHHH
Q 048126 393 YRIRKSELIDCWI-GEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEEGDIAEEKSGEHVVK-MHDVIRDMV 462 (863)
Q Consensus 393 ~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~-mHdli~d~a 462 (863)
+...+....- ..|. .-.......+++.|.+.+++.... . .|. -|++++++.
T Consensus 304 ---~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~---------~-~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 ---KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG---------E-KYCPSEPLISLAF 356 (357)
T ss_dssp ---CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS---------S-CEEESSHHHHHHT
T ss_pred ---CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC---------C-EEEecCHHHHHhh
Confidence 3344332110 1121 011234667899999999987652 2 344 578888763
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=4.1e-15 Score=154.99 Aligned_cols=128 Identities=26% Similarity=0.398 Sum_probs=93.7
Q ss_pred ceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCcc-ccccCCCCeEEccC
Q 048126 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSG-ISTLVSLEHLDLSG 573 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~L~~ 573 (863)
..+.++++++.+..+|.. -.++|+.|++++|.+..+++..|.++++|++|+|++|.+ ..+|.. +.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCC
Confidence 356677777777776642 236788888888888888776788888888888888844 455543 47788888888888
Q ss_pred CCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 574 TAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 574 ~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++.+|.+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 888877654 577888888888887 556666655677788888887776553
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=1.1e-15 Score=165.76 Aligned_cols=238 Identities=14% Similarity=0.121 Sum_probs=154.9
Q ss_pred EEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCc-cccccCCCCe-EEccCCCc
Q 048126 499 MSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPS-GISTLVSLEH-LDLSGTAI 576 (863)
Q Consensus 499 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~-L~L~~~~l 576 (863)
++-+++.+..+|... .++++.|+|++|.++.+++..|.++++|++|+|++|.+.+.+|. .+.++++|+. +.+++|++
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 444555555555321 35677777777777777776677777777777777755555553 4566776654 44555677
Q ss_pred cccc-hhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCC-ccCceEEEEEcChHH
Q 048126 577 THLP-IELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGM-KHLMALTITLKSWEA 654 (863)
Q Consensus 577 ~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~ 654 (863)
+.+| ..+..+++|++|++++| .+..+|........++..|++.++..... .....+..+ ..++.|+++.+....
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccc---ccccchhhcchhhhhhccccccccC
Confidence 7664 34677777777777776 45666653344455666666655432211 001112233 245666766665543
Q ss_pred HHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEecc
Q 048126 655 LQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFC 734 (863)
Q Consensus 655 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c 734 (863)
++... ....+++.|.+.+++..+.++...+..+++|+.|++++|. ++.++.. .+.+|++|.+.+|
T Consensus 169 i~~~~---f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~-----------~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 169 IHNSA---FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY-----------GLENLKKLRARST 233 (350)
T ss_dssp ECTTS---STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS-----------SCTTCCEEECTTC
T ss_pred CChhh---ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh-----------hhccchHhhhccC
Confidence 32211 1224788888887777777776678889999999999874 5544332 3789999999999
Q ss_pred CCCCCCchhhccCCCcEEEEec
Q 048126 735 FKLKDLTWLVFAPSLKSIVVLS 756 (863)
Q Consensus 735 ~~l~~l~~l~~l~~L~~L~l~~ 756 (863)
..++.+|.+..+++|+.+++.+
T Consensus 234 ~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 234 YNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp TTCCCCCCTTTCCSCCEEECSC
T ss_pred CCcCcCCCchhCcChhhCcCCC
Confidence 9999999999999999999865
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=8.4e-15 Score=152.63 Aligned_cols=147 Identities=24% Similarity=0.371 Sum_probs=121.2
Q ss_pred EEEcCCCcccCcccccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccc
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLW 554 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (863)
+...+...+.+|.. -.++++.|++++|.+..++. +..+++|++|++++|.++.++...|.++++|++|+|++|.+..
T Consensus 21 l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 21 VDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred EEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc
Confidence 44444455555432 12579999999999988764 6889999999999999999999988999999999999996554
Q ss_pred cCCccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 555 KLPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
..+..+..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++.+|.+.
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc
Confidence 4445678999999999999999988754 789999999999999 678888776788999999999877654
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=7.1e-16 Score=169.99 Aligned_cols=140 Identities=15% Similarity=0.106 Sum_probs=83.5
Q ss_pred CCCCccceEEccCCccccccch----hhhcCCCccEEEccCCC---ccccCCccc-------cccCCCCeEEccCCCccc
Q 048126 513 PTCPHLLSLFLSDNSLKMIAGD----FFQFMPSLRVFNMSNNH---LLWKLPSGI-------STLVSLEHLDLSGTAITH 578 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~L~~~~---~~~~lp~~i-------~~l~~L~~L~L~~~~l~~ 578 (863)
..+++|++|++++|.+...... .+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++|.++.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 4567777777777766543222 25567777777777752 222344444 567777777777777764
Q ss_pred -----cchhhhcCCCCCEEecCCccccCCCcHHH----hhcC---------CCCcEEEeeccccccCchhhHHHHHcCCc
Q 048126 579 -----LPIELQKLVNLKCLNLEYMYNLNQFPRLV----MSAF---------SKLQVLRILKSNVLFGGHQFLVEELMGMK 640 (863)
Q Consensus 579 -----lp~~~~~l~~L~~L~l~~~~~l~~lp~~~----~~~L---------~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 640 (863)
+|..+.++++|++|++++|. +...+... +..+ ++|++|++.+|.+...........+..++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 66677777777777777773 33211111 2233 67777777777664322222234555666
Q ss_pred cCceEEEEEcChH
Q 048126 641 HLMALTITLKSWE 653 (863)
Q Consensus 641 ~L~~L~l~~~~~~ 653 (863)
+|+.|+++.+...
T Consensus 188 ~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 188 LLHTVKMVQNGIR 200 (386)
T ss_dssp TCCEEECCSSCCC
T ss_pred CcCEEECcCCCCC
Confidence 6676666655543
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=6.7e-16 Score=180.78 Aligned_cols=323 Identities=17% Similarity=0.112 Sum_probs=190.1
Q ss_pred cccceEEEEecccccccc--ccCC-CCCccceEEccCC-ccccc-cchhhhcCCCccEEEccCCCcccc----CCccccc
Q 048126 492 NWRNVRRMSLMKNKIENL--SETP-TCPHLLSLFLSDN-SLKMI-AGDFFQFMPSLRVFNMSNNHLLWK----LPSGIST 562 (863)
Q Consensus 492 ~~~~lr~L~l~~~~~~~l--~~~~-~~~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~ 562 (863)
.++++++|+++++.+... ..+. .+++|++|++++| .+... ...++.++++|++|+|++|.+.+. ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456788888887765432 2222 5778888888887 44331 233455788888888888853322 2333346
Q ss_pred cCCCCeEEccCCC--cc--ccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc--cCchhhHHHHH
Q 048126 563 LVSLEHLDLSGTA--IT--HLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL--FGGHQFLVEEL 636 (863)
Q Consensus 563 l~~L~~L~L~~~~--l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~--~~~~~~~~~~l 636 (863)
+++|++|++++|. +. .++..+.++++|++|++++|..+..+|.. +.++++|++|++..+... ..........+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 6688888888875 22 23333456788888888887555566554 677888888886554321 11112234467
Q ss_pred cCCccCceEE-EEEcChHHHHHHhhhhhhhhcceeeeeccccCCCccccc-chhhcCCCceEEEcCCcccccceeccccc
Q 048126 637 MGMKHLMALT-ITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIF-CLACLHNLNKLYVAGRKHLEDFQMTVQRS 714 (863)
Q Consensus 637 ~~L~~L~~L~-l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~l~~~~~~~ 714 (863)
.++++|+.|. +.......++ ......++|+.|+++++. .....+. .+..+++|++|++++| ..+.......
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~- 334 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLP---AVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLA- 334 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGG---GGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHH-
T ss_pred hcCCCcccccCCcccchhhHH---HHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHH-
Confidence 7778888773 3222222222 222234688888888876 3333222 2456788999999887 2211111111
Q ss_pred cccccccccCcccEEEEecc--------CCCCCC--chh-hccCCCcEEEEeccccchhhccccccccccCCCCCCCCcC
Q 048126 715 SVNQLARGFHSLHTVKVGFC--------FKLKDL--TWL-VFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVF 783 (863)
Q Consensus 715 ~~~~~~~~l~~L~~L~L~~c--------~~l~~l--~~l-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~ 783 (863)
..+++|++|+|.+| ..++.. ..+ ..+++|+.|.+ +|+.++.... ......+
T Consensus 335 ------~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~-----------~~l~~~~ 396 (594)
T 2p1m_B 335 ------STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAAL-----------ITIARNR 396 (594)
T ss_dssp ------HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHH-----------HHHHHHC
T ss_pred ------HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHH-----------HHHHhhC
Confidence 23788999999554 333321 112 24789999955 4555554311 0112357
Q ss_pred CccceeccC-----CCccccccccC------CCCCCCcceEeecCCCCCCCCCC--CC-CCCCCCceEEEccc
Q 048126 784 AKLQFLSLE-----NLRNLCCINWE------ALAFPNLKEIRVEGCPKLFKLPL--DS-NSAKGCKVVIKGEE 842 (863)
Q Consensus 784 p~L~~L~l~-----~~~~L~~i~~~------~~~~p~L~~L~i~~C~~L~~lp~--~~-~~~~L~~l~i~~~~ 842 (863)
|+|+.|+++ +|.+++..+.. ...+++|+.|++++ +++.... .. ..++|+.+.+.+|.
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence 899999998 57777754331 23478999999965 4444211 11 13779999998765
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=6.6e-15 Score=153.58 Aligned_cols=170 Identities=22% Similarity=0.311 Sum_probs=143.0
Q ss_pred EEEcCCCcccCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccC
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKL 556 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l 556 (863)
+...+......+.+..+++++.|++++|.+..++.+..+++|++|++++|.++.+++..|.++++|++|++++|.+.+..
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 125 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC
Confidence 44445555666778889999999999999998888899999999999999999999988999999999999999665555
Q ss_pred CccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHH
Q 048126 557 PSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEE 635 (863)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~ 635 (863)
|..++.+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|...++.+++|++|++.+|.+... ....
T Consensus 126 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~ 200 (272)
T 3rfs_A 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSV----PDGV 200 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC----CTTT
T ss_pred HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCcc----CHHH
Confidence 55689999999999999999988765 689999999999999 67788877678999999999999887642 2234
Q ss_pred HcCCccCceEEEEEcC
Q 048126 636 LMGMKHLMALTITLKS 651 (863)
Q Consensus 636 l~~L~~L~~L~l~~~~ 651 (863)
+..+++|+.|++..+.
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCcCCCEEEccCCC
Confidence 6777888888877554
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=8.8e-15 Score=149.49 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=49.1
Q ss_pred CccEEEccCCCccccCCccccccCCCCeEEccCCC-ccccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEE
Q 048126 541 SLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA-ITHLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLR 618 (863)
Q Consensus 541 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~-l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~ 618 (863)
+|++|++++|.+.+..+..++++++|++|++++|. ++.+|. .+.++++|++|++++|..++.+|...+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666664333233356666666666666664 666654 4566666666666653255555544455666666666
Q ss_pred eecccc
Q 048126 619 ILKSNV 624 (863)
Q Consensus 619 l~~~~~ 624 (863)
+.+|.+
T Consensus 112 l~~n~l 117 (239)
T 2xwt_C 112 IFNTGL 117 (239)
T ss_dssp EEEECC
T ss_pred CCCCCC
Confidence 665544
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=1.3e-14 Score=158.17 Aligned_cols=261 Identities=15% Similarity=0.122 Sum_probs=143.2
Q ss_pred Eecccccccc-ccC-CCCCccceEEccCCccccccc----hhhhcCC-CccEEEccCCCccccCCcccccc-----CCCC
Q 048126 500 SLMKNKIENL-SET-PTCPHLLSLFLSDNSLKMIAG----DFFQFMP-SLRVFNMSNNHLLWKLPSGISTL-----VSLE 567 (863)
Q Consensus 500 ~l~~~~~~~l-~~~-~~~~~L~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~L~~~~~~~~lp~~i~~l-----~~L~ 567 (863)
.++.|.+.+. +.+ ...++|++|++++|.+...+. ..+.+++ +|++|+|++|.+....+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 4455555432 333 334458888888887777765 5567777 78888888885555556666664 7788
Q ss_pred eEEccCCCccccchh-----hhcC-CCCCEEecCCccccCCCcHHHhh----c-CCCCcEEEeeccccccCchhhHHHHH
Q 048126 568 HLDLSGTAITHLPIE-----LQKL-VNLKCLNLEYMYNLNQFPRLVMS----A-FSKLQVLRILKSNVLFGGHQFLVEEL 636 (863)
Q Consensus 568 ~L~L~~~~l~~lp~~-----~~~l-~~L~~L~l~~~~~l~~lp~~~~~----~-L~~L~~L~l~~~~~~~~~~~~~~~~l 636 (863)
+|+|++|.++..+.. +..+ ++|++|++++| .++..+...+. . .++|++|++.+|.+...........+
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 888888877754332 4444 77888888877 34555543232 2 25788888877766544333344445
Q ss_pred cCCc-cCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhc-CCCceEEEcCCcccccceeccccc
Q 048126 637 MGMK-HLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACL-HNLNKLYVAGRKHLEDFQMTVQRS 714 (863)
Q Consensus 637 ~~L~-~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~l~~~~~~~ 714 (863)
..++ +|+.|+++.+.......... ...+..+ ++|++|++++|.... .....+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l-----------------------~~~l~~~~~~L~~L~Ls~N~i~~-~~~~~l~~ 218 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAEL-----------------------AKFLASIPASVTSLDLSANLLGL-KSYAELAY 218 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHH-----------------------HHHHHTSCTTCCEEECTTSCGGG-SCHHHHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHH-----------------------HHHHHhCCCCCCEEECCCCCCCh-hHHHHHHH
Confidence 5554 66666665554322110000 0112333 477777777764322 11110000
Q ss_pred cccccccccCcccEEEEeccCCCCCCch------hhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccce
Q 048126 715 SVNQLARGFHSLHTVKVGFCFKLKDLTW------LVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQF 788 (863)
Q Consensus 715 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~------l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~ 788 (863)
.-....++|++|+|++| .++..+. +..+++|+.|++++|. +..+.. +..... ......+++|+.
T Consensus 219 ---~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~-~~~~~l----~~~~~~l~~L~~ 288 (362)
T 3goz_A 219 ---IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSK-EQCKAL----GAAFPNIQKIIL 288 (362)
T ss_dssp ---HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCH-HHHHHH----HTTSTTCCEEEE
T ss_pred ---HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCH-HHHHHH----HHHhccCCceEE
Confidence 00011357888888876 4554432 3456788888888764 221110 000000 124556777888
Q ss_pred eccCCCc
Q 048126 789 LSLENLR 795 (863)
Q Consensus 789 L~l~~~~ 795 (863)
|++++++
T Consensus 289 LdL~~N~ 295 (362)
T 3goz_A 289 VDKNGKE 295 (362)
T ss_dssp ECTTSCB
T ss_pred EecCCCc
Confidence 8887753
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=1.5e-14 Score=152.00 Aligned_cols=200 Identities=19% Similarity=0.192 Sum_probs=147.7
Q ss_pred CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCE
Q 048126 512 TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKC 591 (863)
Q Consensus 512 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~ 591 (863)
+..+++++.++++++.++.+|..+ .++|++|+|++|.+.+..|..+.++++|++|++++|.++.+|.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 356788999999999999998764 36899999999976666678899999999999999999998865 88999999
Q ss_pred EecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceee
Q 048126 592 LNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSL 671 (863)
Q Consensus 592 L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 671 (863)
|++++| .+..+|.. +..+++|++|++.+|.+... ....+.++++|+.|+++.+..
T Consensus 82 L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l----~~~~~~~l~~L~~L~L~~N~l------------------- 136 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGNEL------------------- 136 (290)
T ss_dssp EECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSCC-------------------
T ss_pred EECCCC-cCCcCchh-hccCCCCCEEECCCCcCccc----CHHHHcCCCCCCEEECCCCCC-------------------
Confidence 999999 67888875 78899999999998877532 123355566666666543322
Q ss_pred eeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCc-hhhccCCCc
Q 048126 672 FLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLT-WLVFAPSLK 750 (863)
Q Consensus 672 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~ 750 (863)
...+...+..+++|+.|++++|. ++.+++..+ ..+++|+.|+|+++ .++.+| .+..+++|+
T Consensus 137 --------~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~--------~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 137 --------KTLPPGLLTPTPKLEKLSLANNN-LTELPAGLL--------NGLENLDTLLLQEN-SLYTIPKGFFGSHLLP 198 (290)
T ss_dssp --------CCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTT--------TTCTTCCEEECCSS-CCCCCCTTTTTTCCCS
T ss_pred --------CccChhhcccccCCCEEECCCCc-CCccCHHHh--------cCcCCCCEEECCCC-cCCccChhhcccccCC
Confidence 22222335567788888888764 344444332 24778888888887 455655 455667788
Q ss_pred EEEEeccc
Q 048126 751 SIVVLSCC 758 (863)
Q Consensus 751 ~L~l~~~~ 758 (863)
.|.|.+++
T Consensus 199 ~l~L~~Np 206 (290)
T 1p9a_G 199 FAFLHGNP 206 (290)
T ss_dssp EEECCSCC
T ss_pred eEEeCCCC
Confidence 88887644
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.7e-14 Score=142.46 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=132.1
Q ss_pred ccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEE
Q 048126 491 QNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570 (863)
Q Consensus 491 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 570 (863)
..+++++.|++++|.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 567899999999999998888899999999999999877665 388999999999999977666888999999999999
Q ss_pred ccCCCccc-cchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEE
Q 048126 571 LSGTAITH-LPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITL 649 (863)
Q Consensus 571 L~~~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 649 (863)
+++|.++. .|..+..+++|++|++++|..+..+|. +..+++|++|++.+|.+... ..+..+++|+.|+++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~------~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY------RGIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC------TTGGGCSSCCEEEECB
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh------HHhccCCCCCEEEeeC
Confidence 99999984 778899999999999999965888884 89999999999999887532 1677889999999987
Q ss_pred cChH
Q 048126 650 KSWE 653 (863)
Q Consensus 650 ~~~~ 653 (863)
+...
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 7643
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=155.35 Aligned_cols=139 Identities=13% Similarity=0.064 Sum_probs=80.8
Q ss_pred ccceEEccCCccccccc-h--hhhcCCCccEEEccCCCccccCCccc--cccCCCCeEEccCCCccc-cc----hhhhcC
Q 048126 517 HLLSLFLSDNSLKMIAG-D--FFQFMPSLRVFNMSNNHLLWKLPSGI--STLVSLEHLDLSGTAITH-LP----IELQKL 586 (863)
Q Consensus 517 ~L~~L~l~~~~l~~~~~-~--~~~~l~~L~~L~L~~~~~~~~lp~~i--~~l~~L~~L~L~~~~l~~-lp----~~~~~l 586 (863)
.++.+.+.++.+....- . .+..+++|++|++++|.+.+..|..+ +.+++|++|++++|.++. .| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45566666654432110 0 01234567788887776666677666 777778888888777763 22 234567
Q ss_pred CCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHH
Q 048126 587 VNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQ 656 (863)
Q Consensus 587 ~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 656 (863)
++|++|++++| .+..++...++.+++|++|++++|.+...........+..+++|+.|+++.+....++
T Consensus 145 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 145 PGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp SCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred cCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 77888888777 4455654446777778888877776542100000011245666666666666554333
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.2e-14 Score=157.48 Aligned_cols=237 Identities=13% Similarity=0.091 Sum_probs=153.8
Q ss_pred ceEEccCCccccccchhhhcCCCccEEEccCCCccccCCc-cccccCCCCeEEccCCCcc-ccch-hhhcCCCCCEEecC
Q 048126 519 LSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPS-GISTLVSLEHLDLSGTAIT-HLPI-ELQKLVNLKCLNLE 595 (863)
Q Consensus 519 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~-~lp~-~~~~l~~L~~L~l~ 595 (863)
++++.+++.++.+|..+ .+++++|+|++| .+..+|. .+.+|++|++|+|++|.+. .+|. .+.++++|+++.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67788888899998764 367999999999 4556664 6889999999999999874 5665 47888888876655
Q ss_pred CccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeecc
Q 048126 596 YMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRC 675 (863)
Q Consensus 596 ~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 675 (863)
++..+..+|.+.+..+++|++|++.+|.+.... ........++..|++ .+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~l~~l~l--------------------------~~ 137 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLP----DVHKIHSLQKVLLDI--------------------------QD 137 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCC----CCTTCCBSSCEEEEE--------------------------ES
T ss_pred cCCcccccCchhhhhccccccccccccccccCC----chhhcccchhhhhhh--------------------------cc
Confidence 555778887766888999999999888764321 001112222333333 22
Q ss_pred ccCCCcccccchhhc-CCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCCch--hhccCCCcEE
Q 048126 676 FNDSKSLDIFCLACL-HNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDLTW--LVFAPSLKSI 752 (863)
Q Consensus 676 ~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L 752 (863)
+.....++...+..+ ..|+.|+++++. ++.++...+. ..+|++|.+.++..++.+|. ++.+++|+.|
T Consensus 138 ~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~---------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 138 NINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFN---------GTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp CTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSST---------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred ccccccccccchhhcchhhhhhcccccc-ccCCChhhcc---------ccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 222222222223333 357777777653 3434333322 45677777777777777763 5677788888
Q ss_pred EEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCCCCCCCcceEeec
Q 048126 753 VVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEALAFPNLKEIRVE 816 (863)
Q Consensus 753 ~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~ 816 (863)
+++++ .++.+ ....|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus 208 dLs~N-~l~~l---------------p~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 208 DISRT-RIHSL---------------PSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp ECTTS-CCCCC---------------CSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred hcCCC-CcCcc---------------ChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 88774 45544 123466777777777777777764 4457777777764
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=3.2e-14 Score=149.74 Aligned_cols=173 Identities=21% Similarity=0.290 Sum_probs=138.6
Q ss_pred cccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCC
Q 048126 488 PEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (863)
Q Consensus 488 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (863)
.....+++++.|++.+|.+..++.+..+++|++|++++|.++.+++ +.++++|++|++++|. +..+| .++.+++|+
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLS-SLKDLKKLK 115 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCC
T ss_pred cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCCh-hhccCCCCC
Confidence 3455678899999999999988888899999999999999988876 8899999999999994 44555 489999999
Q ss_pred eEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEE
Q 048126 568 HLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTI 647 (863)
Q Consensus 568 ~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l 647 (863)
+|++++|.++.+| .+..+++|++|++++| .+..++. ++.+++|++|++.+|.+... . .+..+++|+.|++
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~----~--~l~~l~~L~~L~L 185 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI----V--PLAGLTKLQNLYL 185 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC----G--GGTTCTTCCEEEC
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc----h--hhcCCCccCEEEC
Confidence 9999999999885 6889999999999998 6677753 88999999999999877542 1 1777777887777
Q ss_pred EEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcc
Q 048126 648 TLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKH 703 (863)
Q Consensus 648 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 703 (863)
+.+....+ ..+..+++|+.|++++|..
T Consensus 186 ~~N~i~~l-----------------------------~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 186 SKNHISDL-----------------------------RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CSSCCCBC-----------------------------GGGTTCTTCSEEEEEEEEE
T ss_pred CCCcCCCC-----------------------------hhhccCCCCCEEECcCCcc
Confidence 65543211 2255667888888877643
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4.1e-14 Score=145.67 Aligned_cols=170 Identities=21% Similarity=0.265 Sum_probs=132.0
Q ss_pred EEEcCCCcccCcccccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccc
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLW 554 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (863)
+...+.....+|... .+.++.|++++|.+..++. +..+++|++|++++|.+..+++..|..+++|++|+|++|.+..
T Consensus 19 l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 19 VDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp EECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred EecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc
Confidence 344444455554322 2578999999998877643 5788999999999999988888888899999999999996554
Q ss_pred cCCccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHH
Q 048126 555 KLPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLV 633 (863)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~ 633 (863)
..|..+..+++|++|+|++|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++.+|.+... ..
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~ 172 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV----PH 172 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC----CT
T ss_pred cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc----CH
Confidence 4456678899999999999999988776 588999999999988 67788876688899999999998877532 23
Q ss_pred HHHcCCccCceEEEEEcCh
Q 048126 634 EELMGMKHLMALTITLKSW 652 (863)
Q Consensus 634 ~~l~~L~~L~~L~l~~~~~ 652 (863)
..+..+++|+.|+++.+.+
T Consensus 173 ~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTCTTCCEEECCSCCB
T ss_pred HHHhCCCCCCEEEeeCCce
Confidence 3567788888888887664
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4.9e-14 Score=145.04 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=106.9
Q ss_pred ceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC
Q 048126 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT 574 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (863)
..+.++++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|+|++|.+.+..|..+.++++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4567888888888876532 368999999999999888888899999999999999666656667899999999999999
Q ss_pred Cccccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 575 AITHLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 575 ~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
.++.+|. .+..+++|++|++++| .++.+|...++.+++|++|++.+|.+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC
Confidence 9998875 4688999999999998 677888766788888999888877654
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=1.2e-14 Score=159.99 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=123.1
Q ss_pred cccccceEEEEecccccccc------ccCCCCCccceEEccCCccccc----cchh------hhcCCCccEEEccCCCcc
Q 048126 490 IQNWRNVRRMSLMKNKIENL------SETPTCPHLLSLFLSDNSLKMI----AGDF------FQFMPSLRVFNMSNNHLL 553 (863)
Q Consensus 490 ~~~~~~lr~L~l~~~~~~~l------~~~~~~~~L~~L~l~~~~l~~~----~~~~------~~~l~~L~~L~L~~~~~~ 553 (863)
+..+++++.|++++|.+... ..+..+++|++|++++|.+..+ |..+ +..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34567899999999987653 2256899999999999855433 3332 478999999999999665
Q ss_pred c----cCCccccccCCCCeEEccCCCcc-----ccchhhhcC---------CCCCEEecCCccccC--CCcH--HHhhcC
Q 048126 554 W----KLPSGISTLVSLEHLDLSGTAIT-----HLPIELQKL---------VNLKCLNLEYMYNLN--QFPR--LVMSAF 611 (863)
Q Consensus 554 ~----~lp~~i~~l~~L~~L~L~~~~l~-----~lp~~~~~l---------~~L~~L~l~~~~~l~--~lp~--~~~~~L 611 (863)
. .+|..+.++++|++|+|++|.++ .++..+..+ ++|++|++++|. +. .+|. ..+..+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhC
Confidence 5 37888999999999999999987 344455555 899999999984 43 3442 236789
Q ss_pred CCCcEEEeeccccccCchhhHHH-HHcCCccCceEEEEEcChH
Q 048126 612 SKLQVLRILKSNVLFGGHQFLVE-ELMGMKHLMALTITLKSWE 653 (863)
Q Consensus 612 ~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~~L~l~~~~~~ 653 (863)
++|++|++.+|.+...+...... .+..+++|+.|+++.+...
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 99999999999775322222344 6788899999999887764
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=3.9e-14 Score=163.56 Aligned_cols=111 Identities=19% Similarity=0.355 Sum_probs=60.3
Q ss_pred ccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhc
Q 048126 506 IENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQK 585 (863)
Q Consensus 506 ~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~ 585 (863)
+..+.....+++|+.|++++|.+..++. +..+++|++|+|++|. +..+|. ++.|++|++|+|++|.++.+| .+..
T Consensus 33 i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~ 107 (605)
T 1m9s_A 33 VTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKD 107 (605)
T ss_dssp TTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTT
T ss_pred cccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh-hhcc
Confidence 3333333445555666666665555542 5556666666666663 223333 556666666666666665554 4556
Q ss_pred CCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeecccc
Q 048126 586 LVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 586 l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 624 (863)
+++|++|+|++| .+..+|. +..|++|+.|++.+|.+
T Consensus 108 l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 108 LKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp CTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCC
T ss_pred CCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCcc
Confidence 666666666665 3444443 55556666666555543
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=2.9e-14 Score=155.45 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=165.2
Q ss_pred eEEccCCccccccchhhhcCCCccEEEccCCCccccCC----ccccccC-CCCeEEccCCCcccc-chhhhcC-----CC
Q 048126 520 SLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP----SGISTLV-SLEHLDLSGTAITHL-PIELQKL-----VN 588 (863)
Q Consensus 520 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp----~~i~~l~-~L~~L~L~~~~l~~l-p~~~~~l-----~~ 588 (863)
.+.++.|.+.+..+.++...++|++|+|++|.+....+ ..+.+++ +|++|+|++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35678888888777877777779999999995443333 6677888 899999999988855 4455554 89
Q ss_pred CCEEecCCccccCCCcHHHh----hcC-CCCcEEEeeccccccCchhhHHHHHcCC-ccCceEEEEEcChHHH--HHHhh
Q 048126 589 LKCLNLEYMYNLNQFPRLVM----SAF-SKLQVLRILKSNVLFGGHQFLVEELMGM-KHLMALTITLKSWEAL--QELLI 660 (863)
Q Consensus 589 L~~L~l~~~~~l~~lp~~~~----~~L-~~L~~L~l~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~--~~l~~ 660 (863)
|++|++++|. +...+...+ ..+ ++|++|++.+|.+...........+..+ ++|+.|+++.+..... ..+.
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~- 159 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI- 159 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH-
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH-
Confidence 9999999984 554443323 333 7899999998887654333333445553 4677777665543310 0100
Q ss_pred hhhhhhcceeeeeccccCCCcccccchhhcC-CCceEEEcCCcccccceecccccccccccccc-CcccEEEEeccCCCC
Q 048126 661 SQELQRCTQSLFLRCFNDSKSLDIFCLACLH-NLNKLYVAGRKHLEDFQMTVQRSSVNQLARGF-HSLHTVKVGFCFKLK 738 (863)
Q Consensus 661 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~L~~c~~l~ 738 (863)
..+..++ +|++|++++|.... ..+..+. .....+ ++|++|+|++|. +.
T Consensus 160 ------------------------~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~----~~l~~~~~~L~~L~Ls~N~-i~ 209 (362)
T 3goz_A 160 ------------------------QILAAIPANVNSLNLRGNNLAS-KNCAELA----KFLASIPASVTSLDLSANL-LG 209 (362)
T ss_dssp ------------------------HHHHTSCTTCCEEECTTSCGGG-SCHHHHH----HHHHTSCTTCCEEECTTSC-GG
T ss_pred ------------------------HHHhcCCccccEeeecCCCCch-hhHHHHH----HHHHhCCCCCCEEECCCCC-CC
Confidence 1123333 89999999875432 2222111 001224 599999999984 55
Q ss_pred C-----Cc-hhhc-cCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCc-------cccccccCC
Q 048126 739 D-----LT-WLVF-APSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLR-------NLCCINWEA 804 (863)
Q Consensus 739 ~-----l~-~l~~-l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~-------~L~~i~~~~ 804 (863)
. ++ .+.. .++|+.|+|+++. +...+.... ......+++|+.|++++|. .+..+....
T Consensus 210 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l--------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 210 LKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENL--------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp GSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHH--------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred hhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHH--------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 4 22 2334 3599999999964 544311000 1235678999999999875 133333344
Q ss_pred CCCCCcceEeecCCC
Q 048126 805 LAFPNLKEIRVEGCP 819 (863)
Q Consensus 805 ~~~p~L~~L~i~~C~ 819 (863)
..+++|+.|++++++
T Consensus 281 ~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 281 PNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEEEECTTSCB
T ss_pred ccCCceEEEecCCCc
Confidence 567889999998763
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=2.2e-13 Score=134.44 Aligned_cols=146 Identities=19% Similarity=0.276 Sum_probs=125.0
Q ss_pred EEEEcCCCcccCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcccc
Q 048126 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWK 555 (863)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 555 (863)
.+...+......+.+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..++.+++|++|++++|.+.+.
T Consensus 48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 127 (197)
T 4ezg_A 48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127 (197)
T ss_dssp EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG
T ss_pred EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH
Confidence 34445555566667888899999999999988888889999999999999999875555589999999999999977767
Q ss_pred CCccccccCCCCeEEccCCC-ccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 556 LPSGISTLVSLEHLDLSGTA-ITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 556 lp~~i~~l~~L~~L~L~~~~-l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
.|..++.+++|++|++++|. ++.+| .+..+++|++|++++| .+..++. +..+++|++|++.+|.+.
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 88899999999999999997 88988 7999999999999999 6688873 889999999999988764
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=9.4e-14 Score=160.39 Aligned_cols=172 Identities=20% Similarity=0.258 Sum_probs=138.3
Q ss_pred CcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCC
Q 048126 487 APEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (863)
Q Consensus 487 ~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (863)
......+++|+.|++.+|.+..++.+..+++|+.|+|++|.+..+++ +..+++|++|+|++|. +..+| .++.|++|
T Consensus 36 ~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLS-SLKDLKKL 111 (605)
T ss_dssp EECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCT-TSTTCTTC
T ss_pred ccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCCh-hhccCCCC
Confidence 34456678899999999999999888999999999999999998887 8899999999999994 54566 78999999
Q ss_pred CeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEE
Q 048126 567 EHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALT 646 (863)
Q Consensus 567 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~ 646 (863)
++|+|++|.+..+| .+..|++|+.|+|++| .+..++. ++.|++|+.|++.+|.+... .+ +..+++|+.|+
T Consensus 112 ~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~~----~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 112 KSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI----VP--LAGLTKLQNLY 181 (605)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCCC----GG--GTTCTTCCEEE
T ss_pred CEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCCc----hh--hccCCCCCEEE
Confidence 99999999999875 6899999999999999 6677754 88999999999999887642 11 78888899888
Q ss_pred EEEcChHHHHHHhhhhhhhhcceeeeeccc
Q 048126 647 ITLKSWEALQELLISQELQRCTQSLFLRCF 676 (863)
Q Consensus 647 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 676 (863)
++.+....++.+ ...++|+.|.|+++
T Consensus 182 Ls~N~i~~l~~l----~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 182 LSKNHISDLRAL----AGLKNLDVLELFSQ 207 (605)
T ss_dssp CCSSCCCBCGGG----TTCTTCSEEECCSE
T ss_pred CcCCCCCCChHH----ccCCCCCEEEccCC
Confidence 887765443211 11235555555554
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=2.9e-13 Score=136.96 Aligned_cols=131 Identities=23% Similarity=0.316 Sum_probs=88.7
Q ss_pred cceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEc
Q 048126 494 RNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (863)
++++.|++++|.+..++. +..+++|++|++++|.+..+++..|..+++|++|+|++|.+....+..+..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 567777777777766532 456677777777777777777666677777777777777443333334567777777777
Q ss_pred cCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 572 SGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 572 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
++|.++.+|..+..+++|++|++++| .+..+|...+..+++|++|++.+|...
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77777777777777777777777776 556666555666777777777766554
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=6e-13 Score=139.93 Aligned_cols=163 Identities=24% Similarity=0.349 Sum_probs=139.0
Q ss_pred EEEcCCCcccCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccC
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKL 556 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l 556 (863)
+...+......+.+..+++++.|++++|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++|. +..+
T Consensus 51 L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~-i~~~ 127 (291)
T 1h6t_A 51 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG-ISDI 127 (291)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSC-CCCC
T ss_pred EEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCc-CCCC
Confidence 444444555666788889999999999999988878999999999999999988765 8999999999999995 4455
Q ss_pred CccccccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHH
Q 048126 557 PSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEEL 636 (863)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l 636 (863)
..+..+++|++|++++|.++.+ ..+..+++|++|++++| .+..++. +..+++|++|++.+|.+..- ..+
T Consensus 128 -~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~l------~~l 196 (291)
T 1h6t_A 128 -NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDL------RAL 196 (291)
T ss_dssp -GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBC------GGG
T ss_pred -hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCCC------hhh
Confidence 4789999999999999999988 57999999999999999 6788876 88999999999999987532 348
Q ss_pred cCCccCceEEEEEcChH
Q 048126 637 MGMKHLMALTITLKSWE 653 (863)
Q Consensus 637 ~~L~~L~~L~l~~~~~~ 653 (863)
..+++|+.|+++.+...
T Consensus 197 ~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCSEEEEEEEEEE
T ss_pred ccCCCCCEEECcCCccc
Confidence 88999999999877543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=4.5e-13 Score=138.60 Aligned_cols=154 Identities=20% Similarity=0.223 Sum_probs=130.6
Q ss_pred ccCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccC
Q 048126 485 TEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLV 564 (863)
Q Consensus 485 ~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 564 (863)
...+.+..+++++.|++.+|.+..++.+..+++|+.|++++|.+..+++ +.++++|++|+|++| .+..+|.... .
T Consensus 32 ~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~ 106 (263)
T 1xeu_A 32 TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--A 106 (263)
T ss_dssp TSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--S
T ss_pred ccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--C
Confidence 3444566788999999999999988888899999999999999999887 889999999999999 4556765443 8
Q ss_pred CCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCce
Q 048126 565 SLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMA 644 (863)
Q Consensus 565 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~ 644 (863)
+|++|++++|.++.+| .+..+++|++|++++| .++.+|. ++.+++|++|++.+|.+... ..+..+++|+.
T Consensus 107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~ 176 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT------GGLTRLKKVNW 176 (263)
T ss_dssp SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC------TTSTTCCCCCE
T ss_pred cccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch------HHhccCCCCCE
Confidence 9999999999999986 5999999999999999 6788874 88999999999999887632 55778889999
Q ss_pred EEEEEcChH
Q 048126 645 LTITLKSWE 653 (863)
Q Consensus 645 L~l~~~~~~ 653 (863)
|+++.+...
T Consensus 177 L~l~~N~~~ 185 (263)
T 1xeu_A 177 IDLTGQKCV 185 (263)
T ss_dssp EEEEEEEEE
T ss_pred EeCCCCccc
Confidence 999877543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=2e-13 Score=137.13 Aligned_cols=148 Identities=19% Similarity=0.260 Sum_probs=82.6
Q ss_pred EEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCcc
Q 048126 498 RMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAIT 577 (863)
Q Consensus 498 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~ 577 (863)
.++..++.+..+|.. -.++|+.|++++|.++.+++..|..+++|++|+|++|.+....|..+.++++|++|+|++|.|+
T Consensus 15 ~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 344555555554432 1245666666666666666555666666666666666444444556666666666666666666
Q ss_pred ccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcC
Q 048126 578 HLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKS 651 (863)
Q Consensus 578 ~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 651 (863)
.+|.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+... ....+..+++|+.|++..|.
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTI----AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEE----CHHHHhCCCCCCEEEeCCCC
Confidence 66554 455666666666665 44555444455666666666666555422 12234455566666655443
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=8e-14 Score=148.41 Aligned_cols=199 Identities=15% Similarity=0.061 Sum_probs=109.3
Q ss_pred cceEEEEecccccccc-c-cC--CCCCccceEEccCCccccccc----hhhhcCCCccEEEccCCCccccCCccccccCC
Q 048126 494 RNVRRMSLMKNKIENL-S-ET--PTCPHLLSLFLSDNSLKMIAG----DFFQFMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l-~-~~--~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (863)
++++.|++++|.+... + .+ ..+++|++|++++|.+....+ ..+..+++|++|+|++|.+....|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3466777776666543 1 12 556677777777776654221 22345667777777777554445566667777
Q ss_pred CCeEEccCCCccc---cchh--hhcCCCCCEEecCCccccCCCcHH---HhhcCCCCcEEEeeccccccCchhhHHHHHc
Q 048126 566 LEHLDLSGTAITH---LPIE--LQKLVNLKCLNLEYMYNLNQFPRL---VMSAFSKLQVLRILKSNVLFGGHQFLVEELM 637 (863)
Q Consensus 566 L~~L~L~~~~l~~---lp~~--~~~l~~L~~L~l~~~~~l~~lp~~---~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 637 (863)
|++|++++|++.. +|.. +..+++|++|++++| .++.+|.. .++.+++|++|++++|.+... .+..+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~----~p~~~~ 245 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRAT----VNPSAP 245 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC----CCSCCS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCcc----chhhHH
Confidence 7777777776542 3222 356667777777776 44544432 245566777777766655421 111122
Q ss_pred CCccCceEEEEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceecccccccc
Q 048126 638 GMKHLMALTITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVN 717 (863)
Q Consensus 638 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~ 717 (863)
.+. ..++|+.|+++++.- +.++ ..+ .++|+.|++++|... .++ ..
T Consensus 246 ~~~-----------------------~~~~L~~L~Ls~N~l-~~lp-~~~--~~~L~~L~Ls~N~l~-~~~-~~------ 290 (310)
T 4glp_A 246 RCM-----------------------WSSALNSLNLSFAGL-EQVP-KGL--PAKLRVLDLSSNRLN-RAP-QP------ 290 (310)
T ss_dssp SCC-----------------------CCTTCCCEECCSSCC-CSCC-SCC--CSCCSCEECCSCCCC-SCC-CT------
T ss_pred hcc-----------------------CcCcCCEEECCCCCC-Cchh-hhh--cCCCCEEECCCCcCC-CCc-hh------
Confidence 221 012444455544322 2222 112 268888888886433 222 11
Q ss_pred ccccccCcccEEEEeccC
Q 048126 718 QLARGFHSLHTVKVGFCF 735 (863)
Q Consensus 718 ~~~~~l~~L~~L~L~~c~ 735 (863)
..+++|+.|+|++++
T Consensus 291 ---~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 ---DELPEVDNLTLDGNP 305 (310)
T ss_dssp ---TSCCCCSCEECSSTT
T ss_pred ---hhCCCccEEECcCCC
Confidence 247888888888863
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=1.2e-12 Score=131.44 Aligned_cols=146 Identities=26% Similarity=0.323 Sum_probs=122.2
Q ss_pred EEEcCCCcccCcccccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccc
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLW 554 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (863)
+...+.....+|... .+.++.|++++|.+..++ .+..+++|+.|++++|.+..+++..|.++++|++|+|++|.+ .
T Consensus 16 v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~ 93 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-T 93 (220)
T ss_dssp EECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-C
T ss_pred EEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-C
Confidence 344444555555322 268999999999998876 468899999999999999999888899999999999999954 4
Q ss_pred cCCcc-ccccCCCCeEEccCCCcccc-chhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 555 KLPSG-ISTLVSLEHLDLSGTAITHL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 555 ~lp~~-i~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
.+|.. +..+++|++|+|++|.++.+ |..+..+++|++|++++| .++.+|...+..+++|++|++.+|...
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66654 68899999999999999987 556999999999999999 678888776889999999999988765
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=131.33 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=56.0
Q ss_pred eEEEEecccccccccc---CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEcc
Q 048126 496 VRRMSLMKNKIENLSE---TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (863)
Q Consensus 496 lr~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (863)
++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..++.+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3444444444444321 2344444444444444444444444444444444444443322223334444444444444
Q ss_pred CCCcccc-chhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccc
Q 048126 573 GTAITHL-PIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSN 623 (863)
Q Consensus 573 ~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~ 623 (863)
+|.++.+ |..+..+++|++|++++| .++.++...+..+++|++|++.+|.
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 4444443 333444444444444444 3333322224444444444444443
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=6.2e-13 Score=133.54 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=125.2
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCcccccc-chhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCC
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIA-GDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (863)
+.++++++.+..+|.. -.+.++.|++++|.++.++ ...|.++++|++|+|++|.+.+..|..+.++++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 4788888988887652 3456899999999999884 4668999999999999996655556689999999999999999
Q ss_pred ccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcCh
Q 048126 576 ITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSW 652 (863)
Q Consensus 576 l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 652 (863)
++.+|.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+... .+..+..+++|+.|+++.+.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV----APGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB----CTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE----CHHHhcCCCCCCEEEecCcCC
Confidence 9988765 899999999999999 56777555588999999999999987642 345678899999999987764
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.1e-12 Score=128.68 Aligned_cols=131 Identities=24% Similarity=0.319 Sum_probs=89.1
Q ss_pred cceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEc
Q 048126 494 RNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (863)
Q Consensus 494 ~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (863)
++++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++|.+....+..++++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 467777777777766544 456777777777777777777666677777777777777443333334567777777777
Q ss_pred cCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 572 SGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 572 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
++|.++.+|.. +.++++|++|++++| .+..+|...+..+++|++|++.+|...
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence 77777766654 567777777777776 456666655666777777777766543
No 117
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=2.1e-11 Score=134.03 Aligned_cols=292 Identities=11% Similarity=-0.023 Sum_probs=178.4
Q ss_pred CCccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCC---CCC--CCEEEEEEeCCcc-CHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGA---PND--FDVVIWVVVSKDL-QLEKI 195 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~--F~~~~wv~~s~~~-~~~~~ 195 (863)
..++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++...+. ... ...++|+.++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5689999999999877753 446789999999999999999999875211 011 3357888887776 78888
Q ss_pred HHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc---ccc-ccCCCCCCCCCcEEEEecCchhhh-
Q 048126 196 QEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD---LTK-VGVPFPDPENKSKIVFTTRFLEIC- 270 (863)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~-~~~~l~~~~~gs~IivTtR~~~v~- 270 (863)
+..++.++..........+.......+.+.+..++.+|||||++.... .+. +...+... .+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 888888872211111233456677788888888777999999976421 111 11111111 578899999875321
Q ss_pred ---hcc--cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhC---Cchh-HHHHHHHH--hc---CC
Q 048126 271 ---GAM--KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYA---GLPL-ALITIGRA--MT---CK 336 (863)
Q Consensus 271 ---~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~--l~---~~ 336 (863)
... .....+.+++++.++..++|...+...- ....--.+....+++.++ |.|. |+..+-.+ +. ..
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 111 1123889999999999999998764210 011112456778888888 8887 33333322 22 12
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhccCCCCccccHHhHHHHHHhcCCCCCcccc
Q 048126 337 KTTQEWHHAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRS 416 (863)
Q Consensus 337 ~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 416 (863)
-+.+.+..+++.... ..+..++..|+. +.+..+..++....+-.+. +......-..| .. .
T Consensus 258 i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~----~ 317 (384)
T 2qby_B 258 IRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK----P 317 (384)
T ss_dssp CCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----C
T ss_pred cCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----C
Confidence 466777776665432 234556778887 5555555455411100111 11111111222 11 1
Q ss_pred hhhhhHHHHHHHHHHhccccccc
Q 048126 417 GAYNEGYYIIGILLHACLLEEEE 439 (863)
Q Consensus 417 ~~~~~~~~~~~~L~~~sll~~~~ 439 (863)
........+++.|...+++....
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEe
Confidence 12355677899999999998753
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=1.1e-12 Score=132.70 Aligned_cols=149 Identities=20% Similarity=0.282 Sum_probs=124.7
Q ss_pred eEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCC-ccccccCCCCeEEccCC
Q 048126 496 VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP-SGISTLVSLEHLDLSGT 574 (863)
Q Consensus 496 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~~ 574 (863)
.+.++.+++.+..+|.. -.++|++|++++|.+..+++..|.++++|++|+|++|.+ ..+| ..+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence 44577778888777653 348999999999999999888899999999999999954 5665 45789999999999999
Q ss_pred Cccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcCh
Q 048126 575 AITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSW 652 (863)
Q Consensus 575 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 652 (863)
.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++.+|.+... ....+..+++|+.|++..+.+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI----PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc----CHHHHhCCCCCCEEEeeCCCc
Confidence 99998766 689999999999999 67899987 78999999999999987632 224577888999999886654
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=9.6e-13 Score=126.16 Aligned_cols=129 Identities=23% Similarity=0.271 Sum_probs=96.2
Q ss_pred cceEEEEecccccc--ccccC-CCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEE
Q 048126 494 RNVRRMSLMKNKIE--NLSET-PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570 (863)
Q Consensus 494 ~~lr~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 570 (863)
++++.|++++|.+. .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46788888888776 56554 6778888888888877776 3477788888888888855554777777788888888
Q ss_pred ccCCCccccc--hhhhcCCCCCEEecCCccccCCCcH---HHhhcCCCCcEEEeeccccc
Q 048126 571 LSGTAITHLP--IELQKLVNLKCLNLEYMYNLNQFPR---LVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 571 L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~~~~L~~L~~L~l~~~~~~ 625 (863)
+++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++.+|...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888766 57788888888888887 4566665 34777888888887776543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=1.2e-12 Score=122.77 Aligned_cols=124 Identities=24% Similarity=0.266 Sum_probs=95.9
Q ss_pred cceEEEEecccccc--ccccC-CCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEE
Q 048126 494 RNVRRMSLMKNKIE--NLSET-PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570 (863)
Q Consensus 494 ~~lr~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 570 (863)
++++.|++++|.+. .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57888888888877 55544 7788888888888888777 4478888888888888865555777777788888888
Q ss_pred ccCCCccccc--hhhhcCCCCCEEecCCccccCCCcH---HHhhcCCCCcEEEee
Q 048126 571 LSGTAITHLP--IELQKLVNLKCLNLEYMYNLNQFPR---LVMSAFSKLQVLRIL 620 (863)
Q Consensus 571 L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~~~~L~~L~~L~l~ 620 (863)
+++|.++.+| ..++.+++|++|++++| .+..+|. ..++.+++|++|++.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 8888888765 67888888888888888 5566665 457778888888764
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=1.7e-12 Score=141.21 Aligned_cols=170 Identities=24% Similarity=0.286 Sum_probs=132.5
Q ss_pred EEEcCCCcccCcccccccceEEEEecccccccccc--CC-CCCccceEEccCCccccccchhhhcCCCccEEEccCCCcc
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TP-TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL 553 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (863)
+...+..+..+|.. -...++.|++++|.+..++. +. .+++|++|+|++|.+..+++..|.++++|++|+|++|.+.
T Consensus 23 l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 23 LSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp EECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 34444455555531 23468999999999988754 34 8899999999999999999888999999999999999655
Q ss_pred ccCCccccccCCCCeEEccCCCcccc-chhhhcCCCCCEEecCCccccCCCcHHHh---hcCCCCcEEEeeccccccCch
Q 048126 554 WKLPSGISTLVSLEHLDLSGTAITHL-PIELQKLVNLKCLNLEYMYNLNQFPRLVM---SAFSKLQVLRILKSNVLFGGH 629 (863)
Q Consensus 554 ~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~---~~L~~L~~L~l~~~~~~~~~~ 629 (863)
...+..+.++++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|...+ ..+++|++|++.+|.+..-
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-- 178 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-- 178 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCC--
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCcc--
Confidence 44556789999999999999999977 567999999999999998 7788988755 6799999999999887642
Q ss_pred hhHHHHHcCCcc--CceEEEEEcCh
Q 048126 630 QFLVEELMGMKH--LMALTITLKSW 652 (863)
Q Consensus 630 ~~~~~~l~~L~~--L~~L~l~~~~~ 652 (863)
....+..++. |+.|++..|.+
T Consensus 179 --~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 --PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp --CHHHHHHSCHHHHTTEECCSSCE
T ss_pred --CHHHhhhccHhhcceEEecCCCc
Confidence 3345556665 47788876654
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.5e-12 Score=125.81 Aligned_cols=128 Identities=21% Similarity=0.288 Sum_probs=70.2
Q ss_pred cccceEEEEeccccccccccCCCCC-ccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccc-cccCCCCeE
Q 048126 492 NWRNVRRMSLMKNKIENLSETPTCP-HLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGI-STLVSLEHL 569 (863)
Q Consensus 492 ~~~~lr~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~l~~L~~L 569 (863)
.+.+++.|++++|.+..++.+..+. +|++|++++|.++.+ ..+..+++|++|++++|.+ ..+|..+ +.+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcc-cccCcchhhcCCCCCEE
Confidence 3445666666666665554444433 666666666665555 2255566666666666633 3344333 566666666
Q ss_pred EccCCCccccch--hhhcCCCCCEEecCCccccCCCcHH---HhhcCCCCcEEEeeccc
Q 048126 570 DLSGTAITHLPI--ELQKLVNLKCLNLEYMYNLNQFPRL---VMSAFSKLQVLRILKSN 623 (863)
Q Consensus 570 ~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~---~~~~L~~L~~L~l~~~~ 623 (863)
++++|.++.+|. .+..+++|++|++++| .+..+|.. ++..+++|+.|++..+.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666665555 5556666666666665 33444442 34555555555555443
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.36 E-value=1.5e-11 Score=135.33 Aligned_cols=290 Identities=14% Similarity=0.065 Sum_probs=177.6
Q ss_pred CCccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCC---CCCCEEEEEEeCCccCHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAP---NDFDVVIWVVVSKDLQLEKIQEK 198 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~ 198 (863)
+.++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++...... ..-...+|+.+....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5689999999999998843 4567899999999999999999998762100 00124678888888888899999
Q ss_pred HHHHhCCCCccccCCChhHHHHHHHHHhc--cCcEEEEEeccCCcccc----ccc---cCCCCCC--CCCcEEEEecCch
Q 048126 199 IGRRIGFLDESWKNGSLEDKASDILRILS--KKKFLLLLDDIWERVDL----TKV---GVPFPDP--ENKSKIVFTTRFL 267 (863)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~----~~~---~~~l~~~--~~gs~IivTtR~~ 267 (863)
++.+++...+. ...+..+....+.+.+. +++.+|||||++..... +.+ ....... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99999764321 23345566677777764 46889999999764221 111 1111111 3456777777765
Q ss_pred hh--------hhcccccceEeecCCChHHHHHHHHHHhcc--cccCCCCChHHHHHHHHHHhC---CchhHH-HHHHHHh
Q 048126 268 EI--------CGAMKAHEFLKVECLGPEDAWRLFRENLRR--DVLDNHPDIPELARSVAKEYA---GLPLAL-ITIGRAM 333 (863)
Q Consensus 268 ~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPlai-~~~~~~l 333 (863)
.. ...+. ...+.+++++.++..+++...+.. .....+ .+....+++.++ |.|..+ ..+..+.
T Consensus 178 ~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 32 12111 146889999999999999987643 111112 235677888888 999433 3322221
Q ss_pred c-----C--CCChhHHHHHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhc-cCCCCccccHHhHHHHH-
Q 048126 334 T-----C--KKTTQEWHHAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCG-LFPEDYRIRKSELIDCW- 404 (863)
Q Consensus 334 ~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~-~fp~~~~i~~~~li~~w- 404 (863)
. + .-+.+.+..+++.... ..+.-++..|+. +.+..++..+ .+-....+....+.+..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 1355666666554422 234456678887 5555544444 33222234444333322
Q ss_pred ---HhcCCCCCcccchhhhhHHHHHHHHHHhccccccc
Q 048126 405 ---IGEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEE 439 (863)
Q Consensus 405 ---~a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 439 (863)
-..| .. .-....+..+++.|...++++...
T Consensus 320 ~~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 320 ELTSTLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 1223 11 122356678899999999998753
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=2.6e-12 Score=127.92 Aligned_cols=147 Identities=22% Similarity=0.222 Sum_probs=117.6
Q ss_pred EEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCcc
Q 048126 498 RMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAIT 577 (863)
Q Consensus 498 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~ 577 (863)
.++..++.+..+|. ...++|++|++++|.++.+++..|.++++|++|++++|.+....+..+..+++|++|++++|.++
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 45566666666653 33578999999999999999888999999999999999555333445789999999999999999
Q ss_pred ccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEc
Q 048126 578 HLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLK 650 (863)
Q Consensus 578 ~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 650 (863)
.+|.. +..+++|++|++++| .+..+|...+..+++|++|++.+|.+... ....+..+++|+.|+++.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSC
T ss_pred ccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCcccee----CHHHhccCCCccEEEecCC
Confidence 88865 689999999999998 67888877678999999999999876532 2223566777777777655
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2.3e-13 Score=140.83 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=125.7
Q ss_pred ccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEcc
Q 048126 493 WRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (863)
Q Consensus 493 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (863)
+.++..+++..+.+..++.+..+++|++|++++|.++.++ .+..+++|++|+|++| .+..+|. ++++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 4456666777788877777788899999999999888887 3788999999999999 4556665 8899999999999
Q ss_pred CCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcCh
Q 048126 573 GTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSW 652 (863)
Q Consensus 573 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 652 (863)
+|.++.+|.... ++|++|++++| .++.+|. ++.+++|++|++.+|.+... ..+..+++|+.|+++.+..
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~~------~~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKSI------VMLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCBC------GGGGGCTTCCEEECTTSCC
T ss_pred CCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCCC------hHHccCCCCCEEECCCCcC
Confidence 999988875443 89999999998 6677764 78899999999988876532 2456666666666654332
Q ss_pred HHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCccc
Q 048126 653 EALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHL 704 (863)
Q Consensus 653 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 704 (863)
. .. ..+..+++|+.|++++|...
T Consensus 163 ~---------------------------~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 163 T---------------------------NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C---------------------------BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred c---------------------------ch--HHhccCCCCCEEeCCCCccc
Confidence 1 11 23566788888888887543
No 126
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.32 E-value=1.1e-10 Score=128.34 Aligned_cols=290 Identities=11% Similarity=0.063 Sum_probs=178.5
Q ss_pred CCccchhHHHHHHHHHhcC----CCcc--EEEEEcCCCCcHHHHHHHHHhhhcCCCCC-CCEEEEEEeCCccCHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----EQVG--IIGLYGMGGVGKTTLLTKINNKLLGAPND-FDVVIWVVVSKDLQLEKIQEK 198 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~ 198 (863)
+.++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++.. ... -..++|+.++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5689999999999998864 3334 89999999999999999999987 222 135678888888888899999
Q ss_pred HHHHhCCCCccccCCChhHHHHHHHHHhc--cCcEEEEEeccCCcc--ccccccCCCCC-CC---CCcEEEEecCchhhh
Q 048126 199 IGRRIGFLDESWKNGSLEDKASDILRILS--KKKFLLLLDDIWERV--DLTKVGVPFPD-PE---NKSKIVFTTRFLEIC 270 (863)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--~~~~~~~~l~~-~~---~gs~IivTtR~~~v~ 270 (863)
++..++...+. ...+..+....+.+.+. +++.+||||+++... ....+...+.. .. .+..||++|+.....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99988754321 22345556666666664 568899999997642 22233222211 11 366788888766432
Q ss_pred hccc-------ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHh---------CCchhHHHHHHHHhc
Q 048126 271 GAMK-------AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEY---------AGLPLALITIGRAMT 334 (863)
Q Consensus 271 ~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPlai~~~~~~l~ 334 (863)
.... ....+.+++++.++..+++...+.... ....--.+....|++.+ +|.|..+..+.....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 2221 123689999999999999998765311 01122356788899999 788765544433221
Q ss_pred ------CC--CChhHHHHHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhccCC---CCccccHHhHHHH
Q 048126 335 ------CK--KTTQEWHHAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCGLFP---EDYRIRKSELIDC 403 (863)
Q Consensus 335 ------~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp---~~~~i~~~~li~~ 403 (863)
+. -+.+....+..... ...+.-.+..|+. +.+.++..++.+. .+..+....+...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 11 22233333322211 1112223456776 5666665565443 2214455555544
Q ss_pred HHh----cCCCCCcccchhhhhHHHHHHHHHHhccccccc
Q 048126 404 WIG----EGFLDQYDRSGAYNEGYYIIGILLHACLLEEEE 439 (863)
Q Consensus 404 w~a----~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 439 (863)
+-. .|. .+ -.......++++|...+++....
T Consensus 318 ~~~~~~~~~~-~~----~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 318 YKIVCEEYGE-RP----RVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHTTC-CC----CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHcCC-CC----CCHHHHHHHHHHHHhCCCeEEee
Confidence 332 221 11 12345667899999999998754
No 127
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.6e-11 Score=135.14 Aligned_cols=292 Identities=13% Similarity=0.065 Sum_probs=173.6
Q ss_pred CCccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
..++||+.+++.+.+++.. ...+.+.|+|++|+||||||+.+++........-..++|+.+....+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999998863 456789999999999999999999876211000235678887777777888888888
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhc--cCcEEEEEeccCCcc------ccccccCCCCC-CCCCcEEEEecCchhhhhc
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILS--KKKFLLLLDDIWERV------DLTKVGVPFPD-PENKSKIVFTTRFLEICGA 272 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~~~l~~-~~~gs~IivTtR~~~v~~~ 272 (863)
+++..... ...+..+....+.+.+. +++.+||+|+++... .+..+...+.. ...+..+|+||+.......
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 87654321 22345555666666665 348999999997532 12222111110 2345667888876543222
Q ss_pred cc-------ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhC---CchhHHHHHHHHh-c-----C-
Q 048126 273 MK-------AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYA---GLPLALITIGRAM-T-----C- 335 (863)
Q Consensus 273 ~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPlai~~~~~~l-~-----~- 335 (863)
+. ....+.+++++.++..+++.+.+.... ....-..+....+++.++ |.|..+..+.... . +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 11 114789999999999999998654211 111223566778888888 9998544333221 1 1
Q ss_pred -CCChhHHHHHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhccCCC-C-ccccHHhHHHHH--Hh--cC
Q 048126 336 -KKTTQEWHHAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCGLFPE-D-YRIRKSELIDCW--IG--EG 408 (863)
Q Consensus 336 -~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~-~-~~i~~~~li~~w--~a--~g 408 (863)
.-+.+.+..+++... ...+.-++..+|. +.+..+..++.+-+ + -.+....+.+.. ++ .|
T Consensus 258 ~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 134555555554432 1234455667776 55555544442211 1 123333232211 11 12
Q ss_pred CCCCcccchhhhhHHHHHHHHHHhcccccc
Q 048126 409 FLDQYDRSGAYNEGYYIIGILLHACLLEEE 438 (863)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~L~~~sll~~~ 438 (863)
+.+ -.......+++.|...++++..
T Consensus 324 -~~~----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 -VEA----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp -CCC----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred -CCC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 111 1124466789999999999765
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=1.1e-11 Score=141.40 Aligned_cols=113 Identities=24% Similarity=0.408 Sum_probs=70.2
Q ss_pred ceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCC
Q 048126 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGT 574 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (863)
+++.|++++|.+..+|... +++|++|++++|.++.+| ..+++|++|+|++|.+ ..+|. +++ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECCCC
Confidence 5667777777666655422 366777777777666666 2356677777777733 34665 544 6777777777
Q ss_pred CccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeecccc
Q 048126 575 AITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 575 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 624 (863)
.++.+|. .+++|++|++++| .++.+|. .+++|++|++.+|.+
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQL 172 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCC
T ss_pred cCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCC
Confidence 7766665 5666777777766 4455554 355666666665543
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=3.1e-12 Score=139.09 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=123.0
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccchhhh-cCCCccEEEccCCCccccCCccccccCCCCeEEccCCC
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQ-FMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (863)
+.++++++.+..+|.. -.+.++.|+|++|.++.+++..|. ++++|++|+|++|.+....|..+.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 5688888888887753 345699999999999999988787 99999999999996655556789999999999999999
Q ss_pred ccccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHH
Q 048126 576 ITHLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEA 654 (863)
Q Consensus 576 l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 654 (863)
++.+|. .+..+++|++|++++| .+..++...+..+++|++|++.+|.+..-. ......+..+++|+.|+++.+....
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCCc
Confidence 998876 4899999999999999 567776556899999999999998876421 1122223567888888888776543
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=6.1e-12 Score=143.56 Aligned_cols=131 Identities=22% Similarity=0.275 Sum_probs=89.8
Q ss_pred EEEEcCCCcccCcccccccceEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcccc
Q 048126 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWK 555 (863)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 555 (863)
.+...+..+..+|... .++++.|++++|.+..+| ..+++|++|++++|.++.+|. +.+ +|++|+|++|. +..
T Consensus 63 ~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~-l~~ 134 (571)
T 3cvr_A 63 ELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQ-LTM 134 (571)
T ss_dssp EEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSC-CSC
T ss_pred EEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCc-CCC
Confidence 3444444444444311 357888888888777776 557788888888887777766 333 78888888884 344
Q ss_pred CCccccccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 556 LPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 556 lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
+|. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. +. ++|++|++.+|.+.
T Consensus 135 lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC
Confidence 776 57778888888888877776 5677888888877 5566776 33 77788887777554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.2e-11 Score=119.29 Aligned_cols=126 Identities=18% Similarity=0.230 Sum_probs=106.0
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCc
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 576 (863)
+.++++++.+..+|.. -.++|+.|++++|.++.+|. .|.++++|++|+|++|.+....|..+.++++|++|+|++|.|
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4677888888877653 34689999999999998884 589999999999999966555567799999999999999999
Q ss_pred cccch-hhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 577 THLPI-ELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 577 ~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
+.+|. .+..+++|++|++++| .+..+|...+..+++|++|++.+|...
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 98875 5899999999999998 678888876888999999999888764
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.5e-11 Score=117.31 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=107.4
Q ss_pred eEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCC
Q 048126 496 VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575 (863)
Q Consensus 496 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (863)
.+.+++.++.+..+|. ...++|+.|++++|.++.+++..|..+++|++|++++|.+....+..++.+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3567777888777763 345789999999999999998888999999999999995543334457899999999999999
Q ss_pred ccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeecccccc
Q 048126 576 ITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLF 626 (863)
Q Consensus 576 l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 626 (863)
++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++.+|....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9988875 689999999999998 6788888767889999999999887653
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1.1e-11 Score=119.59 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=114.2
Q ss_pred cccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhh-hc
Q 048126 507 ENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIEL-QK 585 (863)
Q Consensus 507 ~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~-~~ 585 (863)
...+.+.++++|+.|++++|.++.++. +....++|++|++++|.+. .+ ..++.+++|++|++++|.++.+|..+ ..
T Consensus 10 ~~~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 10 EQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp HTSCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred HHHHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCC-cc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 334556788999999999999988854 3344449999999999544 45 68899999999999999999998765 99
Q ss_pred CCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHH
Q 048126 586 LVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEA 654 (863)
Q Consensus 586 l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 654 (863)
+++|++|++++| .+..+|. ..+..+++|++|++.+|.+.... ......+..+++|+.|+++.+....
T Consensus 87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcH-hHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999999 6688886 23789999999999999875431 1122347788999999998887654
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.5e-11 Score=120.47 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=107.2
Q ss_pred EEEEeccccccccccCCCCCccceEEccCCccccccch-hhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCC
Q 048126 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGD-FFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575 (863)
Q Consensus 497 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (863)
+.++++++.+..+|.. -..+|++|++++|.+..+++. .|..+++|++|+|++|.+.+..|..++++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5788888888887753 234899999999999988864 58999999999999997666668899999999999999999
Q ss_pred ccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeecccccc
Q 048126 576 ITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLF 626 (863)
Q Consensus 576 l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 626 (863)
++.+|.. +..+++|++|++++| .+..++...+..+++|++|++.+|....
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9987655 889999999999998 5565644458889999999999887653
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1.6e-11 Score=117.47 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=109.7
Q ss_pred CCCCccceEEccCCccc--cccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccc-cchhhhcCCCC
Q 048126 513 PTCPHLLSLFLSDNSLK--MIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITH-LPIELQKLVNL 589 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L 589 (863)
...++|+.|++++|.+. .+|.. +..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|..+.++++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34588999999999988 67654 7899999999999995 4455 788999999999999999997 88888889999
Q ss_pred CEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcCh
Q 048126 590 KCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSW 652 (863)
Q Consensus 590 ~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 652 (863)
++|++++| .++.+|. ..+..+++|++|++.+|.+.... ......+..+++|+.|++..+..
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEETTS
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCCCh
Confidence 99999999 6788763 34889999999999999876431 11224678888888888876653
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=1.4e-11 Score=115.35 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=103.4
Q ss_pred CCCCccceEEccCCccc--cccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccc-cchhhhcCCCC
Q 048126 513 PTCPHLLSLFLSDNSLK--MIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITH-LPIELQKLVNL 589 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L 589 (863)
...++|+.|++++|.+. .+|. .+..+++|++|++++|.+ ..+ ..++++++|++|++++|.++. +|..+..+++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34578999999999988 6665 478999999999999954 445 688999999999999999997 88888889999
Q ss_pred CEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEE
Q 048126 590 KCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTI 647 (863)
Q Consensus 590 ~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l 647 (863)
++|++++| .++.+|. ..++.+++|++|++.+|.+.... ......+..+++|+.|++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGST-THHHHHHHHCTTCCEETT
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchH-HHHHHHHHHCCCcccccC
Confidence 99999999 5677652 34889999999999998775431 111245667777777754
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.4e-10 Score=118.56 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=115.9
Q ss_pred CCccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++... ....+.. ..+.. ... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~---~~~~~---~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCGV---CDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS---SCCSC---SHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC---CCCcc---cHH-HHHHhccCC
Confidence 458999999999999997643 45889999999999999999998762 1111100 00000 000 001110000
Q ss_pred CCCccccCC--ChhHHHHHHHHHh-----ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCchhhh-h-cc
Q 048126 205 FLDESWKNG--SLEDKASDILRIL-----SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFLEIC-G-AM 273 (863)
Q Consensus 205 ~~~~~~~~~--~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~v~-~-~~ 273 (863)
...-..... ........+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|+||+..... . ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 000000000 0111112222221 346799999999763 23444433333334578888888765321 1 11
Q ss_pred cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHh
Q 048126 274 KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAM 333 (863)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 333 (863)
.....+.+++++.++..+++...+..... .--.+....|++.|+|.|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12357899999999999999988754321 1124667899999999999988876544
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=1.6e-11 Score=145.48 Aligned_cols=109 Identities=26% Similarity=0.275 Sum_probs=57.4
Q ss_pred CCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEE
Q 048126 513 PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCL 592 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 592 (863)
..+++|+.|+|++|.+..++..++ ++++|++|+|++|.+ ..+|..+++|++|++|+|++|.|+.+|..+++|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 344555555555555555554422 455555555555532 255555555555555555555555555555555555555
Q ss_pred ecCCccccCCCcHHHhhcCCCCcEEEeeccccc
Q 048126 593 NLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 593 ~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 625 (863)
+|++| .++.+|.. ++.|++|++|++.+|.+.
T Consensus 299 ~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 299 YFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred ECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 55555 34455544 555555555555555443
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=8.9e-11 Score=134.71 Aligned_cols=119 Identities=22% Similarity=0.240 Sum_probs=66.2
Q ss_pred eEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCC
Q 048126 496 VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575 (863)
Q Consensus 496 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (863)
++.|++++|.+..+|.+..+++|+.|++++|.++.+|.. |+++++|++|+|++|. +..+| .+++|++|++|+|++|.
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCC
Confidence 555666666665555555566666666666665555543 5566666666666663 33355 55666666666666666
Q ss_pred cccc--chhhhcCCCCCEEecCCccccCCCcHH---HhhcCCCCcEEE
Q 048126 576 ITHL--PIELQKLVNLKCLNLEYMYNLNQFPRL---VMSAFSKLQVLR 618 (863)
Q Consensus 576 l~~l--p~~~~~l~~L~~L~l~~~~~l~~lp~~---~~~~L~~L~~L~ 618 (863)
|+.+ |..++.+++|++|++++| .+..+|+. ++..+++|+.|+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 6655 555666666666666665 33333321 223355555553
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.2e-10 Score=133.56 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=108.6
Q ss_pred EEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccc
Q 048126 499 MSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITH 578 (863)
Q Consensus 499 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~ 578 (863)
+.+.+|.+..++. ..|++|++++|.++.+|. |+++++|++|+|++|. +..+|..+++|++|++|+|++|.|+.
T Consensus 428 l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 428 KFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCC
Confidence 3344444444432 249999999999999875 8999999999999994 55999999999999999999999999
Q ss_pred cchhhhcCCCCCEEecCCccccCCC--cHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEE
Q 048126 579 LPIELQKLVNLKCLNLEYMYNLNQF--PRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALT 646 (863)
Q Consensus 579 lp~~~~~l~~L~~L~l~~~~~l~~l--p~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~ 646 (863)
+| .++++++|++|++++| .++.+ |.. ++.+++|+.|++.+|.+.... .....-+..+++|+.|+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~-~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE-GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CG-GGTTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS-SCTTHHHHHCTTCSEEE
T ss_pred Cc-ccCCCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc-cHHHHHHHHCcccCccC
Confidence 99 8999999999999999 66777 665 899999999999999876431 11122233466777664
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.12 E-value=4.1e-10 Score=113.24 Aligned_cols=183 Identities=10% Similarity=0.094 Sum_probs=115.6
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+...+...+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHHhc
Confidence 45899999999999999876655689999999999999999998751 11121 2344444443333333222221111
Q ss_pred CCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCchhhh-h-cccccceEe
Q 048126 205 FLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFLEIC-G-AMKAHEFLK 280 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~v~-~-~~~~~~~~~ 280 (863)
... .-.+++.+||+||++... ....+...+.....+.++|+||+..... . .......+.
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 100 012568899999997642 2233332222334567888888765321 1 111223789
Q ss_pred ecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 281 VECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 281 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
+.+++.++..+++.+.+...... --.+....+++.++|.|..+..+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999877543211 124567889999999998655544
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=8.4e-11 Score=139.33 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=106.8
Q ss_pred ccccccceEEEEecccccccccc-CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCC
Q 048126 489 EIQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (863)
.+..+..++.|++++|.+..++. ...+++|++|+|++|.++.+|.. |+++++|++|+|++|.+ ..+|..+++|.+|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRL-TSLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCC-SSCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcC-CccChhhcCCCCCC
Confidence 45667889999999999987753 46899999999999999988866 79999999999999954 48999999999999
Q ss_pred eEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCC-CcEEEeeccccc
Q 048126 568 HLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSK-LQVLRILKSNVL 625 (863)
Q Consensus 568 ~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~-L~~L~l~~~~~~ 625 (863)
+|+|++|.|+.+|..+++|++|++|+|++|. +...+...+..+.. +..|++.+|...
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 9999999999999999999999999999994 45444333443321 223455555443
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=4.3e-10 Score=110.05 Aligned_cols=121 Identities=26% Similarity=0.281 Sum_probs=102.0
Q ss_pred EEEcCCCcccCcccccccceEEEEeccccccccc-cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcccc
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS-ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWK 555 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 555 (863)
+...+.....+|.. -.++++.|++++|.+..++ .+..+++|+.|++++|.++.+++..|.++++|++|+|++|.+...
T Consensus 15 l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 15 VRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp EECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred EEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence 33444445555532 2358999999999998875 458899999999999999999988899999999999999966655
Q ss_pred CCccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCCcc
Q 048126 556 LPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMY 598 (863)
Q Consensus 556 lp~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 598 (863)
.|..+..+++|++|+|++|.++.+|.. +..+++|++|++++|+
T Consensus 94 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 667899999999999999999999875 8899999999999984
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=4.5e-10 Score=109.91 Aligned_cols=122 Identities=24% Similarity=0.253 Sum_probs=101.6
Q ss_pred EEEcCCCcccCcccccccceEEEEecccccccccc---CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCcc
Q 048126 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE---TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLL 553 (863)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (863)
+...+.....+|.. -..+++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+.
T Consensus 13 l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 13 VDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred EEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC
Confidence 33344445555532 12389999999999988764 678999999999999999998888999999999999999766
Q ss_pred ccCCccccccCCCCeEEccCCCcccc-chhhhcCCCCCEEecCCccc
Q 048126 554 WKLPSGISTLVSLEHLDLSGTAITHL-PIELQKLVNLKCLNLEYMYN 599 (863)
Q Consensus 554 ~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~ 599 (863)
+..|..+.++++|++|+|++|.++.+ |..+..+++|++|++++|+.
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 66677799999999999999999966 77899999999999999843
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=8.5e-12 Score=123.04 Aligned_cols=108 Identities=16% Similarity=0.209 Sum_probs=48.4
Q ss_pred hhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCc
Q 048126 536 FQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQ 615 (863)
Q Consensus 536 ~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~ 615 (863)
+..+++|++|++++|. +..+| .++++++|++|++++|.++.+|..+..+++|++|++++| .+..+|. ++.+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~--~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH--HHHHHHSS
T ss_pred HhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc--cccCCCCC
Confidence 4444455555554442 22344 444444555555555444444444444444555555444 3344442 44444555
Q ss_pred EEEeeccccccCchhhHHHHHcCCccCceEEEEEcC
Q 048126 616 VLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKS 651 (863)
Q Consensus 616 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 651 (863)
+|++.+|.+... ..+..+..+++|+.|+++.+.
T Consensus 119 ~L~l~~N~i~~~---~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 119 VLYMSNNKITNW---GEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEESEEECCCH---HHHHHHTTTTTCSEEEECSCH
T ss_pred EEECCCCcCCch---hHHHHHhcCCCCCEEEecCCc
Confidence 555544443210 111334444555555554443
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=2.9e-11 Score=119.22 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=102.3
Q ss_pred ceEEEEeccc--cccccc-cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEc
Q 048126 495 NVRRMSLMKN--KIENLS-ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (863)
Q Consensus 495 ~lr~L~l~~~--~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (863)
.++...+.+. .+..++ .+..+++|++|++++|.+..+| .+.++++|++|++++| .+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 3444444433 233333 3577899999999999998887 4889999999999999 45588988888999999999
Q ss_pred cCCCccccchhhhcCCCCCEEecCCccccCCCcH-HHhhcCCCCcEEEeeccccc
Q 048126 572 SGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPR-LVMSAFSKLQVLRILKSNVL 625 (863)
Q Consensus 572 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~ 625 (863)
++|.++.+| .+..+++|++|++++| .+..+|. ..+..+++|++|++.+|.+.
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 999999988 6899999999999998 5677665 34789999999999988764
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=6.5e-10 Score=107.26 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=98.5
Q ss_pred cCCCcccCcccccccceEEEEecccccccccc--CCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCC
Q 048126 480 AGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLP 557 (863)
Q Consensus 480 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 557 (863)
.+.....+|. ...++++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++|.+.+..|
T Consensus 15 ~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 93 (177)
T 2o6r_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93 (177)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH
Confidence 3334444442 234689999999999988764 4789999999999999999998888999999999999996554444
Q ss_pred ccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCCccc
Q 048126 558 SGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYN 599 (863)
Q Consensus 558 ~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 599 (863)
..+..+++|++|++++|.++.+|.. +..+++|++|++++|+.
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 5578999999999999999999876 57899999999999854
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=7.1e-10 Score=118.79 Aligned_cols=283 Identities=13% Similarity=0.073 Sum_probs=147.1
Q ss_pred ccceEEEEeccccc-cccccCCC-CCccceEEccCCccc--cccchhhhcCCCccEEEccCCCccccCC-ccccc-----
Q 048126 493 WRNVRRMSLMKNKI-ENLSETPT-CPHLLSLFLSDNSLK--MIAGDFFQFMPSLRVFNMSNNHLLWKLP-SGIST----- 562 (863)
Q Consensus 493 ~~~lr~L~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~----- 562 (863)
+.+++.|.+.++-- ..+..+.. +++|++|+|++|.+. ...... ++.++++.+..+ .+| ..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhccccccc
Confidence 45677777765311 11222222 778888888888776 222222 222444444444 122 23444
Q ss_pred ---cCCCCeEEccCCCccccchh-hhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcC
Q 048126 563 ---LVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMG 638 (863)
Q Consensus 563 ---l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 638 (863)
+.+|+.|+|.. .++.++.. |..|++|+.|++.++ .+..++...+..+.++..+..................+.+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777777 67666553 677777777777766 4455665556655555555443211100000000001222
Q ss_pred CccCc-eEEEEEcChHHHHHHhhh-hhhhhcceeeeeccccCCCcccccchh-hcCCCceEEEcCCcccccceecccccc
Q 048126 639 MKHLM-ALTITLKSWEALQELLIS-QELQRCTQSLFLRCFNDSKSLDIFCLA-CLHNLNKLYVAGRKHLEDFQMTVQRSS 715 (863)
Q Consensus 639 L~~L~-~L~l~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~l~~~~~~~~ 715 (863)
+..|+ .+.+. ....++..... .....++..+.+.+. ........+. .+++|+.|++.++. ++.++...+
T Consensus 175 ~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF--- 246 (329)
T 3sb4_A 175 GEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTF--- 246 (329)
T ss_dssp SCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTT---
T ss_pred ccccceeEEec--CCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhh---
Confidence 33343 22222 22222222111 111234444444432 1111111122 36788888888754 444544443
Q ss_pred ccccccccCcccEEEEeccCCCCCCc--hhhccCCCc-EEEEeccccchhhccccccccccCCCCCCCCcCCccceeccC
Q 048126 716 VNQLARGFHSLHTVKVGFCFKLKDLT--WLVFAPSLK-SIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLE 792 (863)
Q Consensus 716 ~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 792 (863)
..+++|++|+|.+. ++.++ .+..+++|+ .|.+.+ .++.+. ...+.++++|+.|.+.
T Consensus 247 -----~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~------------~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 247 -----AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIE------------FGAFMGCDNLRYVLAT 305 (329)
T ss_dssp -----TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEEC------------TTTTTTCTTEEEEEEC
T ss_pred -----hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEc------------hhhhhCCccCCEEEeC
Confidence 34788888888773 66555 356778888 888876 455552 2467778889999886
Q ss_pred CCccccccccC-CCCCCCcceEe
Q 048126 793 NLRNLCCINWE-ALAFPNLKEIR 814 (863)
Q Consensus 793 ~~~~L~~i~~~-~~~~p~L~~L~ 814 (863)
+ .+++.+... ...+++|+.|.
T Consensus 306 ~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 306 G-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp S-SCCCEECTTTTCTTCCCCEEE
T ss_pred C-CccCccchhhhcCCcchhhhc
Confidence 5 466776653 33466777664
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=7.1e-10 Score=106.42 Aligned_cols=98 Identities=18% Similarity=0.340 Sum_probs=49.4
Q ss_pred EEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCcc-ccccCCCCeEEccCCCc
Q 048126 498 RMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSG-ISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 498 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~L~~~~l 576 (863)
.++++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|+|++|. +..+|.. +.++++|++|+|++|.|
T Consensus 16 ~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc
Confidence 4455555554444321 2455555555555555554445555555555555552 2233332 34555555555555555
Q ss_pred cccchh-hhcCCCCCEEecCCc
Q 048126 577 THLPIE-LQKLVNLKCLNLEYM 597 (863)
Q Consensus 577 ~~lp~~-~~~l~~L~~L~l~~~ 597 (863)
+.+|.. +..+++|++|++++|
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS
T ss_pred ceeCHHHhccccCCCEEEeCCC
Confidence 555543 555555555555554
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=6.7e-10 Score=106.62 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=92.1
Q ss_pred cceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCC
Q 048126 518 LLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEY 596 (863)
Q Consensus 518 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~ 596 (863)
-+.+++++|.+..+|..+ .++|++|+|++|.+.+..|..++++++|++|+|++|+|+.+|.. +.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999999998764 38899999999966655688899999999999999999999886 58999999999999
Q ss_pred ccccCCCcHHHhhcCCCCcEEEeecccccc
Q 048126 597 MYNLNQFPRLVMSAFSKLQVLRILKSNVLF 626 (863)
Q Consensus 597 ~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 626 (863)
| .+..+|...+..+++|++|++.+|.+..
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8 6788988778899999999999987653
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=7.6e-10 Score=105.86 Aligned_cols=102 Identities=24% Similarity=0.320 Sum_probs=56.9
Q ss_pred ceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchh-hhcCCCCCEEecCCc
Q 048126 519 LSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYM 597 (863)
Q Consensus 519 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~ 597 (863)
+.+++++|.++.+|..+ .++|++|+|++|.+.+..|..+.++++|++|+|++|+|+.+|.. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555555555432 24556666666643333355555666666666666666655544 355666666666665
Q ss_pred cccCCCcHHHhhcCCCCcEEEeecccc
Q 048126 598 YNLNQFPRLVMSAFSKLQVLRILKSNV 624 (863)
Q Consensus 598 ~~l~~lp~~~~~~L~~L~~L~l~~~~~ 624 (863)
.+..+|...+..+++|++|++.+|..
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 44555554455566666666665544
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.1e-09 Score=104.58 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=88.2
Q ss_pred eEEEEeccccccccccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCC
Q 048126 496 VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTA 575 (863)
Q Consensus 496 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (863)
.+.+++++|.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++|.+....|..+..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 467899999988887533 4899999999999999988889999999999999995553334456899999999999999
Q ss_pred ccccchh-hhcCCCCCEEecCCcc
Q 048126 576 ITHLPIE-LQKLVNLKCLNLEYMY 598 (863)
Q Consensus 576 l~~lp~~-~~~l~~L~~L~l~~~~ 598 (863)
|+.+|.. +..+++|++|++++|+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9999875 8999999999999984
No 153
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.96 E-value=2.4e-09 Score=93.58 Aligned_cols=63 Identities=10% Similarity=0.111 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 048126 8 NLPALQAQLQKLIESENDVMARVANAENQQ-MRQLNTVQGWLSRVEAVETEVGELMRDSSQEVD 70 (863)
Q Consensus 8 ~~~~l~~~l~~l~~~l~~i~~~~~~ae~~~-~~~~~~v~~wl~~l~~~~y~~ed~~d~~~~~~~ 70 (863)
-+..++++++.|+..|..|++++.+|+.+. ...++.++.|+++||+++||+||+||+|.++..
T Consensus 20 l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 20 LHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999999999999873 224588999999999999999999999998875
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=2.8e-09 Score=113.89 Aligned_cols=184 Identities=14% Similarity=0.146 Sum_probs=114.0
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+. ..+++..+...+...+ +.++..+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 45899999999999999877655589999999999999999998851 11111 2344444433232222 12222111
Q ss_pred CCCccccCCChhHHHHHHHHHh-ccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCchhh-hhc-ccccceE
Q 048126 205 FLDESWKNGSLEDKASDILRIL-SKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFLEI-CGA-MKAHEFL 279 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~v-~~~-~~~~~~~ 279 (863)
... ..+ .+++.++|+||++.. ..+..+...+.....++++|+||+...- ... ......+
T Consensus 98 ~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 98 QKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 000 001 346889999999863 2233333333233456788888866432 111 1122478
Q ss_pred eecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhH-HHHHHH
Q 048126 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLA-LITIGR 331 (863)
Q Consensus 280 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla-i~~~~~ 331 (863)
.+.+++.++..+++...+...... --.+....|++.++|.|.. +..+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999876533211 1245678899999999954 444443
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.90 E-value=4.2e-08 Score=104.71 Aligned_cols=271 Identities=16% Similarity=0.106 Sum_probs=143.5
Q ss_pred CCccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
..+||++..++.+.+++.. .....+.|+|++|+|||++|+.+++.. ... .+++.++.......+...+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHHH
Confidence 5689999999998888752 244678899999999999999999887 222 23444433322222221111
Q ss_pred HHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc--cccccCCCC--------C----------CCCCcEE
Q 048126 201 RRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD--LTKVGVPFP--------D----------PENKSKI 260 (863)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~~~l~--------~----------~~~gs~I 260 (863)
. . ..++.+|++||++.... ...+...+. . ...+.++
T Consensus 86 ~-----------------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 86 N-----------------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp T-----------------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred H-----------------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 0 0 12456778888865321 111100000 0 0123456
Q ss_pred EEecCchh-hhhccc--ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHhcC--
Q 048126 261 VFTTRFLE-ICGAMK--AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAMTC-- 335 (863)
Q Consensus 261 ivTtR~~~-v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~-- 335 (863)
|.||.... +...+. ....+.+.+++.++..+++.+.+..... .--.+....+++.++|.|..+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 66665432 211111 1247899999999999999887754321 122467889999999999888776655421
Q ss_pred ----C--CChhHHHHHHHHHHhcCCCCCCCcchhhhhhhhhcCCCCchhhHHHHhHhccCCCCccccHHhHH----HHHH
Q 048126 336 ----K--KTTQEWHHAIQILRRSSSEFPGMGKEVYPLLKFSYDSLPDDTIRSCFLYCGLFPEDYRIRKSELI----DCWI 405 (863)
Q Consensus 336 ----~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li----~~w~ 405 (863)
. -+.+....++..+..........+..+...+.-.|..-+. .....--.++ +++..+. .+-+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lg-------i~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALS-------EDPGTLEEVHEPYLI 290 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTT-------SCHHHHHHHTHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhC-------CCHHHHHHHHhHHHH
Confidence 1 2344444444433211111111111122222222222121 1222222222 3333332 2456
Q ss_pred hcCCCCCcc-cchhhhhHHHHHH-HHHHhccccc
Q 048126 406 GEGFLDQYD-RSGAYNEGYYIIG-ILLHACLLEE 437 (863)
Q Consensus 406 a~g~i~~~~-~~~~~~~~~~~~~-~L~~~sll~~ 437 (863)
..|++.... +....+.|..|++ ++.+|+|+|+
T Consensus 291 ~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 291 RQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 678887554 6667788899987 8888988885
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=2.1e-08 Score=107.23 Aligned_cols=263 Identities=13% Similarity=0.085 Sum_probs=172.5
Q ss_pred ccceEEEEecccccccccc-CCCCCccceEEccCCccccccchhhhc--------CCCccEEEccCCCccccCCcccccc
Q 048126 493 WRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMIAGDFFQF--------MPSLRVFNMSNNHLLWKLPSGISTL 563 (863)
Q Consensus 493 ~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~--------l~~L~~L~L~~~~~~~~lp~~i~~l 563 (863)
+++++.|++++|.+..+.. ...++.++.+.+..+ .+|...|.+ |++|+.|+|.++ ....-+..+.++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~~-i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCTT-CCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCcc-ccchhHHHhhcC
Confidence 5689999999999873211 123333555655555 567777888 999999999984 554445678899
Q ss_pred CCCCeEEccCCCccccchh-hhcCCCCCEEecCCcc---ccCCCcHHHhhcCCCCc-EEEeeccccccCchhhHHHHHcC
Q 048126 564 VSLEHLDLSGTAITHLPIE-LQKLVNLKCLNLEYMY---NLNQFPRLVMSAFSKLQ-VLRILKSNVLFGGHQFLVEELMG 638 (863)
Q Consensus 564 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~---~l~~lp~~~~~~L~~L~-~L~l~~~~~~~~~~~~~~~~l~~ 638 (863)
.+|+.|++..+.+..++.. +..+.++..+...... ....+....+..+.+|+ .+.+...... ..........
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l---~~~~~~~~~~ 200 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL---EDEIMKAGLQ 200 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH---HHHHHHTTCC
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH---HHHHhhcccC
Confidence 9999999999988877654 7777777777665421 12233333355666776 4444322211 0112222234
Q ss_pred CccCceEEEEEcChH-HHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceecccccccc
Q 048126 639 MKHLMALTITLKSWE-ALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVN 717 (863)
Q Consensus 639 L~~L~~L~l~~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~ 717 (863)
..++..+.+...-.. ....+ ...+++|+.|+|.++. .+.++-.++..+++|+.|.+.++ ++.+....+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l---~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF----- 269 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLI---RDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF----- 269 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHH---HHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-----
T ss_pred ccccceEEEeeeecHHHHHHH---HHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHh-----
Confidence 567777777654221 11111 1234689999998643 55666677899999999999875 665655544
Q ss_pred ccccccCccc-EEEEeccCCCCCCc--hhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceecc
Q 048126 718 QLARGFHSLH-TVKVGFCFKLKDLT--WLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSL 791 (863)
Q Consensus 718 ~~~~~l~~L~-~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l 791 (863)
..+++|+ .|.|.+ .++.++ .+..+++|+.|++.. +.++.+. ...+.++++|+.+..
T Consensus 270 ---~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~------------~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 ---SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLG------------DELFGNGVPSKLIYK 328 (329)
T ss_dssp ---TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEEC------------TTTTCTTCCCCEEEC
T ss_pred ---hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccc------------hhhhcCCcchhhhcc
Confidence 3588999 999988 566665 466889999999976 4566663 246778899998864
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=1.7e-08 Score=107.97 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=113.5
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC-CEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF-DVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...+ ...+.+..+...+...+...+ ..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 101 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIREKV-KEFA 101 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTTHHHH-HHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHHHHHH-HHHH
Confidence 46899999999999999877666699999999999999999998851 1111 123334333221111111111 1100
Q ss_pred CCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCchhh-hhc-ccccceEe
Q 048126 205 FLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFLEI-CGA-MKAHEFLK 280 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~v-~~~-~~~~~~~~ 280 (863)
... ....+++.++|+||++.. .....+...+.....++++|+||....- ... ......+.
T Consensus 102 ~~~----------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 102 RTK----------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HSC----------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred hhC----------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 000 011256789999999764 2233333223233456788888876432 111 11123688
Q ss_pred ecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHHHh
Q 048126 281 VECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGRAM 333 (863)
Q Consensus 281 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 333 (863)
+.+++.++..+++...+...... --.+....|++.++|.|..+..+...+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999998876543211 124567889999999998766554443
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=3.3e-07 Score=100.19 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=68.1
Q ss_pred CCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccchhhhcCCCCCEE
Q 048126 513 PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPIELQKLVNLKCL 592 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 592 (863)
.+| +|+.+.+..+ ++.++...|.++ +|+.+.+..+ ....-+..+.++.+|+.+++..|.++.+|...-...+|+.+
T Consensus 133 ~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 133 RNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp TTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred ccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 444 5777777655 667776667664 5777777764 33333456777777888888777777777664446777777
Q ss_pred ecCCccccCCCcHHHhhcCCCCcEEEee
Q 048126 593 NLEYMYNLNQFPRLVMSAFSKLQVLRIL 620 (863)
Q Consensus 593 ~l~~~~~l~~lp~~~~~~L~~L~~L~l~ 620 (863)
.+.. .++.++...+.++++|+.+.+.
T Consensus 209 ~lp~--~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 209 LLPV--TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCCEECC
T ss_pred EeCC--chheehhhHhhCCCCCCEEecC
Confidence 7764 3566666666777777777664
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=3e-08 Score=107.00 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=62.6
Q ss_pred EEeccc-cccccccCCCCCccceEEccC-CccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCc
Q 048126 499 MSLMKN-KIENLSETPTCPHLLSLFLSD-NSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAI 576 (863)
Q Consensus 499 L~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l 576 (863)
++.+++ .+..+|.+..+++|+.|+|++ |.+..+++..|.++++|++|+|++|.+.+..|..|++|++|++|+|++|.|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 344554 555565556666677777764 666666666666777777777777755444555666677777777777777
Q ss_pred cccchhhhcCCCCCEEecCCc
Q 048126 577 THLPIELQKLVNLKCLNLEYM 597 (863)
Q Consensus 577 ~~lp~~~~~l~~L~~L~l~~~ 597 (863)
+.+|..+....+|+.|++.+|
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSS
T ss_pred ceeCHHHcccCCceEEEeeCC
Confidence 666655443334666666665
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=7.5e-09 Score=112.19 Aligned_cols=157 Identities=15% Similarity=0.089 Sum_probs=95.4
Q ss_pred ceEEEEeccccccccc-----cC--CCCCccceEEccCCcccccc-chhhhcCCCccEEEccCCCccccCCccc-----c
Q 048126 495 NVRRMSLMKNKIENLS-----ET--PTCPHLLSLFLSDNSLKMIA-GDFFQFMPSLRVFNMSNNHLLWKLPSGI-----S 561 (863)
Q Consensus 495 ~lr~L~l~~~~~~~l~-----~~--~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~lp~~i-----~ 561 (863)
.++.|++++|.+.... .. ..+++|+.|+|++|.+.... ..+...+++|++|+|++|.+.......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 5777788777765321 11 23467888888888765332 2223445678888888885433222222 2
Q ss_pred ccCCCCeEEccCCCccc-----cchhhhcCCCCCEEecCCccccCCC-----cHHHhhcCCCCcEEEeeccccccCchhh
Q 048126 562 TLVSLEHLDLSGTAITH-----LPIELQKLVNLKCLNLEYMYNLNQF-----PRLVMSAFSKLQVLRILKSNVLFGGHQF 631 (863)
Q Consensus 562 ~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~l-----p~~~~~~L~~L~~L~l~~~~~~~~~~~~ 631 (863)
..++|++|+|++|.|+. ++..+..+++|++|++++|. +... +. .+...++|++|++.+|.+...+...
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHH
Confidence 35678888888887753 55556777788888888773 3321 22 2456677888888777765432233
Q ss_pred HHHHHcCCccCceEEEEEcChH
Q 048126 632 LVEELMGMKHLMALTITLKSWE 653 (863)
Q Consensus 632 ~~~~l~~L~~L~~L~l~~~~~~ 653 (863)
....+...++|+.|+++.|...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 4455556677777777766553
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.1e-07 Score=96.94 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=103.6
Q ss_pred ccchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCC-----CCCEEEEEEeCCccCHHHHHHH
Q 048126 128 TVGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPN-----DFDVVIWVVVSKDLQLEKIQEK 198 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~F~~~~wv~~s~~~~~~~~~~~ 198 (863)
+.||++++++|...|.. +..+.+.|+|++|+|||++|+.|++...+... .| .+++|.+....+...++..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 67999999999887753 56788999999999999999999998732111 12 3567777777788899999
Q ss_pred HHHHhCCCCccccCCChhHHHHHHHHHh---ccCcEEEEEeccCCccccccccCCC--C--CCCCCcEEEEecCchh---
Q 048126 199 IGRRIGFLDESWKNGSLEDKASDILRIL---SKKKFLLLLDDIWERVDLTKVGVPF--P--DPENKSKIVFTTRFLE--- 268 (863)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~~~l--~--~~~~gs~IivTtR~~~--- 268 (863)
|++++..... ......+....+.+.+ .++++++|||+++....-+-+...+ + ..++ .-||.++...+
T Consensus 101 I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~-~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 101 IWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSK-LSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCC-EEEEEECCSSCCCH
T ss_pred HHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCc-EEEEEEecCcccch
Confidence 9999954321 1122223333333333 4567999999997643111111111 1 1112 22333343321
Q ss_pred --h----hhcccccceEeecCCChHHHHHHHHHHhcc
Q 048126 269 --I----CGAMKAHEFLKVECLGPEDAWRLFRENLRR 299 (863)
Q Consensus 269 --v----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 299 (863)
+ ...++ ...+.+++++.+|-.+++.+++..
T Consensus 178 ~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 178 EQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 11221 246889999999999999988653
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=5.8e-08 Score=104.72 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=87.5
Q ss_pred ceEEccCC-ccccccchhhhcCCCccEEEccC-CCccccCCccccccCCCCeEEccCCCccccch-hhhcCCCCCEEecC
Q 048126 519 LSLFLSDN-SLKMIAGDFFQFMPSLRVFNMSN-NHLLWKLPSGISTLVSLEHLDLSGTAITHLPI-ELQKLVNLKCLNLE 595 (863)
Q Consensus 519 ~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~-~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~ 595 (863)
..++++++ .++.+|. +..+++|++|+|++ |.+.+..|..+++|.+|++|+|++|.|+.+|+ .|.+|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 8999987 88999999999996 84444444789999999999999999998865 58999999999999
Q ss_pred CccccCCCcHHHhhcCCCCcEEEeecccccc
Q 048126 596 YMYNLNQFPRLVMSAFSKLQVLRILKSNVLF 626 (863)
Q Consensus 596 ~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 626 (863)
+| .+..+|...+..++ |+.|++.+|.+.-
T Consensus 89 ~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SS-CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CC-ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99 67889877566665 9999999887653
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=2.4e-07 Score=98.55 Aligned_cols=180 Identities=11% Similarity=0.129 Sum_probs=112.1
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.+++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.+..+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCT------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccCh------------
Confidence 45899999999999999876655589999999999999999998751 11111 1233333322111
Q ss_pred CCCccccCCChhHHHHHHHHH--h-ccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCchh-hhhc-ccccc
Q 048126 205 FLDESWKNGSLEDKASDILRI--L-SKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFLE-ICGA-MKAHE 277 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~ 277 (863)
....+....+... + .+++.++|+|+++... ....+...+.....+.++|+||.... +... .....
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 0111111111111 1 2567899999997642 23444444444445778888876543 2111 11224
Q ss_pred eEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 278 FLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 278 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
.+.+.+++.++..+++...+...... --.+....+++.++|.+..+....
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78999999999999998876543211 124567888899999987655443
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=2.6e-08 Score=107.92 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=84.4
Q ss_pred CCccceEEccCCccccccchhhhc-----CCCccEEEccCCCccccCCcc-ccccCCCCeEEccCCCcccc-----chhh
Q 048126 515 CPHLLSLFLSDNSLKMIAGDFFQF-----MPSLRVFNMSNNHLLWKLPSG-ISTLVSLEHLDLSGTAITHL-----PIEL 583 (863)
Q Consensus 515 ~~~L~~L~l~~~~l~~~~~~~~~~-----l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~L~~~~l~~l-----p~~~ 583 (863)
.++|+.|++++|.+.......+.. .++|++|+|++|.+....... ...+.+|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456888888888776544333332 368888888888544322222 23466788888888887632 2222
Q ss_pred -hcCCCCCEEecCCccccCC-----CcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChH
Q 048126 584 -QKLVNLKCLNLEYMYNLNQ-----FPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWE 653 (863)
Q Consensus 584 -~~l~~L~~L~l~~~~~l~~-----lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 653 (863)
...++|++|++++| .++. ++.. +..+++|++|++.+|.+...+.......+...++|+.|+++.|...
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 24577888888887 3333 2222 4567778888888777654322333455666667777777766544
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.57 E-value=6e-07 Score=97.78 Aligned_cols=194 Identities=14% Similarity=0.151 Sum_probs=110.9
Q ss_pred CCccchhHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
.+++|++..++.+.+.+..++ .+.+.|+|+.|+||||+|+.+++.. .....+. ...+........+...-.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 468999999999999997654 4578899999999999999999887 2111110 001111011111111000
Q ss_pred CCC---ccccCCChhHHHHHHHHHh-----ccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCchh-hhh-c
Q 048126 205 FLD---ESWKNGSLEDKASDILRIL-----SKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFLE-ICG-A 272 (863)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~~-~ 272 (863)
... ........++ ...+.+.+ .+++.++|+||++... ....+...+.....+..+|++|.... +.. .
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 000 0000011111 12222222 2467899999997532 23333322323334667777776432 211 1
Q ss_pred ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHHH
Q 048126 273 MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIGR 331 (863)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 331 (863)
......+.+.+++.++..+++.+.+...... --.+....|++.++|.|..+..+..
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1123578999999999999998776432211 1245678899999999988776543
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=1.9e-06 Score=94.20 Aligned_cols=257 Identities=12% Similarity=0.083 Sum_probs=164.7
Q ss_pred CCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccch-hhhcCCCCCEE
Q 048126 514 TCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPI-ELQKLVNLKCL 592 (863)
Q Consensus 514 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L 592 (863)
.+..+..+.+..+ ++.++...|.++ +|+.+.+..+ ....-...+.+ .+|+.+.+.. .++.++. .+..+.+|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3567777777654 778888888886 7999999887 43333345555 4799999986 6777764 58899999999
Q ss_pred ecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcChHHHHHHhhhhhhhhcceeee
Q 048126 593 NLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEALQELLISQELQRCTQSLF 672 (863)
Q Consensus 593 ~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 672 (863)
++.++ .+..+|...+. .++|+.+.+..+ +.. .....+.++++|+.+.+.. ++
T Consensus 186 ~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~----I~~~aF~~~~~L~~l~l~~-----------------~l---- 237 (401)
T 4fdw_A 186 DLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKE----IGSQAFLKTSQLKTIEIPE-----------------NV---- 237 (401)
T ss_dssp ECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCE----ECTTTTTTCTTCCCEECCT-----------------TC----
T ss_pred ecCCC-cceEechhhEe-ecccCEEEeCCc-hhe----ehhhHhhCCCCCCEEecCC-----------------Cc----
Confidence 99887 67888887666 588999888643 211 1122355566666665531 11
Q ss_pred eccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCC----CCCc--hhhcc
Q 048126 673 LRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKL----KDLT--WLVFA 746 (863)
Q Consensus 673 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l----~~l~--~l~~l 746 (863)
+.+...++.. .+|+.+.+.. .++.+....+ ..+++|+.+.+.++..- ..++ .+..+
T Consensus 238 -------~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF--------~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c 299 (401)
T 4fdw_A 238 -------STIGQEAFRE-SGITTVKLPN--GVTNIASRAF--------YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC 299 (401)
T ss_dssp -------CEECTTTTTT-CCCSEEEEET--TCCEECTTTT--------TTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred -------cCcccccccc-CCccEEEeCC--CccEEChhHh--------hCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence 1222233444 5778887743 3444433333 34778888888774211 1232 35577
Q ss_pred CCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccCC-CCCCCcceEeecCCCCCCCCC
Q 048126 747 PSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWEA-LAFPNLKEIRVEGCPKLFKLP 825 (863)
Q Consensus 747 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp 825 (863)
++|+.+.|.+ .++.+. ...+.++++|+.+.|.+ +++.+.... ..+ +|+.|.+.+. .+..++
T Consensus 300 ~~L~~l~l~~--~i~~I~------------~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~ 361 (401)
T 4fdw_A 300 PKLARFEIPE--SIRILG------------QGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVF 361 (401)
T ss_dssp TTCCEECCCT--TCCEEC------------TTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCC
T ss_pred ccCCeEEeCC--ceEEEh------------hhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccc
Confidence 8888888874 355552 24566788899998854 466665433 335 8999999774 555555
Q ss_pred CCCCC---CCCCceEEE
Q 048126 826 LDSNS---AKGCKVVIK 839 (863)
Q Consensus 826 ~~~~~---~~L~~l~i~ 839 (863)
.+... ..++.+.+.
T Consensus 362 ~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CSSCCCSCTTCCEEEEC
T ss_pred cccccCCCCCccEEEeC
Confidence 44332 456677775
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.48 E-value=1.7e-07 Score=91.41 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=41.8
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++||+.+++++.+++.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999987767788999999999999999999876
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.44 E-value=3.6e-07 Score=92.69 Aligned_cols=172 Identities=10% Similarity=0.060 Sum_probs=102.8
Q ss_pred CCccch---hHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 126 EPTVGL---ESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 126 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
+.++|. +..++.+..+...+..+.+.|+|++|+||||+|+.+++... .....+.|+.++...+. +.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~~ 98 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STAL 98 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHHH
Confidence 457763 35566666666655677899999999999999999998872 12234567765432110 0000
Q ss_pred hCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc----cccccCCCCC-CCCC-cEEEEecCchh--------
Q 048126 203 IGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD----LTKVGVPFPD-PENK-SKIVFTTRFLE-------- 268 (863)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~~~l~~-~~~g-s~IivTtR~~~-------- 268 (863)
+ +.+ .++.+||+||++.... ...+...+.. ...+ .++|+||+...
T Consensus 99 ~--------------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 99 L--------------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp G--------------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred H--------------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 001 3467899999975421 1112111110 0112 24777776422
Q ss_pred -hhhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 269 -ICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 269 -v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
+...+.....+.+++++.++..+++...+..... .--.+....+++.++|.+-.+..+.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1122222257899999999999999987753321 1225677889999999887665544
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.33 E-value=1.4e-06 Score=90.87 Aligned_cols=176 Identities=19% Similarity=0.187 Sum_probs=101.5
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
..++|.+..+++|.+.+.. ...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-.+
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 4589999999999888742 345678999999999999999999886 222 23333222110
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc----------------ccccccCCCC--CC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV----------------DLTKVGVPFP--DP 254 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~~~~~l~--~~ 254 (863)
. ............+......++.+|++||++... .+..+...+. ..
T Consensus 90 -------------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 -------------K---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------C---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------h---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 000011111222222334467899999996421 0111111110 12
Q ss_pred CCCcEEEEecCchhhh-----hcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCC-chhHHHH
Q 048126 255 ENKSKIVFTTRFLEIC-----GAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAG-LPLALIT 328 (863)
Q Consensus 255 ~~gs~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~ 328 (863)
..+..||.||...... ........+.++..+.++-.+++...+.......... ...+++.+.| .|-.+..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 3457788888754331 1112234688999999999999998876543222222 4566777766 4544444
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.29 E-value=4.3e-05 Score=78.81 Aligned_cols=196 Identities=17% Similarity=0.127 Sum_probs=107.2
Q ss_pred CCccchhHHHHHHHHH-------hc---CCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHH
Q 048126 126 EPTVGLESMFDKVWRC-------LG---EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKI 195 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~-------L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 195 (863)
..++|....++++... +. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~----- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM----- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh-----
Confidence 4578887776666662 32 3456788999999999999999999986 2222 222222110
Q ss_pred HHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc-----------cc-cccccCCC---CCCCCCcEE
Q 048126 196 QEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER-----------VD-LTKVGVPF---PDPENKSKI 260 (863)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~-~~~~~~~l---~~~~~gs~I 260 (863)
++.. ...........+......+..+|++||++.. .. ...+...+ ........|
T Consensus 102 -------~g~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 -------IGFS----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -------TTCC----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -------cCCc----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 0000011222223333456889999998642 00 11111111 112334556
Q ss_pred EEecCchhhhhc---ccc-cceEeecCCCh-HHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCC------chhHHHHH
Q 048126 261 VFTTRFLEICGA---MKA-HEFLKVECLGP-EDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAG------LPLALITI 329 (863)
Q Consensus 261 ivTtR~~~v~~~---~~~-~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPlai~~~ 329 (863)
|.||........ .+. ...+.+++++. ++-..++.+... --.+....|++.+.| +.-++..+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~--------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN--------FKDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC--------SCHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC--------CCHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 777777644322 111 34678899988 666666655311 114557888888887 44444444
Q ss_pred HHHhcCCCChhHHHHHHHHHHhc
Q 048126 330 GRAMTCKKTTQEWHHAIQILRRS 352 (863)
Q Consensus 330 ~~~l~~~~~~~~w~~~l~~l~~~ 352 (863)
-.. ........+..+++.+...
T Consensus 243 ~~a-~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 243 EMS-LQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHH-TTSCGGGHHHHHHHHHHHT
T ss_pred HHH-hhhchHHHHHHHHHHHHHc
Confidence 333 2234556777777777654
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=5e-06 Score=94.15 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=107.6
Q ss_pred CCccchhHHHHHHHHHhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC
Q 048126 126 EPTVGLESMFDKVWRCLGE-----------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK 188 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 188 (863)
..++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. .+ .++.+.++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCCC
Confidence 4589999999999999864 134789999999999999999999886 22 244555555
Q ss_pred ccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH--HhccCcEEEEEeccCCccc-----cccccCCCCCCCCCcEEE
Q 048126 189 DLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR--ILSKKKFLLLLDDIWERVD-----LTKVGVPFPDPENKSKIV 261 (863)
Q Consensus 189 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~kr~LlVlDdv~~~~~-----~~~~~~~l~~~~~gs~Ii 261 (863)
......+ ...+...... ...........+ ...+++.+||+|+++.... +..+...+.. .+..||
T Consensus 113 ~~~~~~~-~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 113 VRSKTLL-NAGVKNALDN------MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp CCCHHHH-HHTGGGGTTB------CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred cchHHHH-HHHHHHHhcc------ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 4443322 2222221110 000000000000 1235788999999975421 1222111111 233455
Q ss_pred EecCchh---hhhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc-hhHHHHHH
Q 048126 262 FTTRFLE---ICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL-PLALITIG 330 (863)
Q Consensus 262 vTtR~~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 330 (863)
+++.... +.........+.+++++.++..+.+...+.......++ +....|++.++|. +-++..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 5554322 22222223468999999999999998876543322222 3477899999995 44555543
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=3.8e-06 Score=92.90 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=104.8
Q ss_pred Ccc-chhH--HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC--CEEEEEEeCCccCHHHHHHHHH
Q 048126 127 PTV-GLES--MFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF--DVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 127 ~~v-Gr~~--~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
.|| |... ....+......++ ...+.|+|++|+||||||+.+++... ..+ ..+++++.. .+...+.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~---~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV---QNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH---HHCCSSCEEEEEHH------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEeeHH------HHHHHHH
Confidence 455 6433 3344444444433 67889999999999999999998762 122 134555433 2334444
Q ss_pred HHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc----cccccCCCCC-CCCCcEEEEecCch--------
Q 048126 201 RRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD----LTKVGVPFPD-PENKSKIVFTTRFL-------- 267 (863)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~~~l~~-~~~gs~IivTtR~~-------- 267 (863)
..+... . ...+.+.+..+.-+|++||++.... .+.+...+.. ...|..||+||.+.
T Consensus 177 ~~~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 177 DSMKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 433211 1 1223334443677999999975432 1222211110 13467788888762
Q ss_pred -hhhhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 268 -EICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 268 -~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
.+...+.....+.+++++.++-.+++.+.+.......+ .++...|++.++|.+-.+..
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 22232333357889999999999999988754322222 23467888999998865543
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=2.8e-06 Score=91.58 Aligned_cols=194 Identities=11% Similarity=0.113 Sum_probs=109.8
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCC-CCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGA-PNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..... ...+ .++.+..+.......+. +....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVR-EKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHT-THHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHH-HHHHHHh
Confidence 5689999999999999987655558999999999999999998875100 0111 13334444332333222 1111111
Q ss_pred CCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCchh-hhhc-ccccceEe
Q 048126 205 FLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFLE-ICGA-MKAHEFLK 280 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~ 280 (863)
... ........ ....-.+++-+|++|+++... ....+...+.......++|++|.... +... ......+.
T Consensus 115 ~~~---~~~~~~~~---~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 115 RLT---VSKPSKHD---LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HSC---CCCCCTTH---HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hhc---ccccchhh---cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 000 00000000 000112355699999987532 12222222222234566777665432 2111 11123688
Q ss_pred ecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 281 VECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 281 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
+.+++.++....+.+.+...... --.+....|++.++|.|..+..+.
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999998876543211 225678899999999998755443
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.26 E-value=1.5e-05 Score=87.98 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=104.5
Q ss_pred CCccchhHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHH
Q 048126 126 EPTVGLESMF---DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~ 201 (863)
..+||.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++.. ...| +.++.. .....+ +.++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHHHH
Confidence 5689999888 778888877777889999999999999999999886 2222 222221 122221 11111
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEE-EecCchhh---hhcccc
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIV-FTTRFLEI---CGAMKA 275 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Ii-vTtR~~~v---~~~~~~ 275 (863)
.. ......+++.+|++|+++... ..+.+...+.. + ...+| .||.+... ......
T Consensus 97 ~a------------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 97 RA------------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HH------------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTT
T ss_pred HH------------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCc
Confidence 10 011124678899999997642 23333322222 1 23333 35555431 111122
Q ss_pred cceEeecCCChHHHHHHHHHHhcccccC---C-CCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 276 HEFLKVECLGPEDAWRLFRENLRRDVLD---N-HPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 276 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~---~-~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
..++.+++++.++-..++.+.+...... . ..--.+....|++.++|.+-.+..+.
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 3478899999999999999886542100 1 11224567888888999876555443
No 175
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.26 E-value=8.5e-05 Score=79.32 Aligned_cols=171 Identities=14% Similarity=0.082 Sum_probs=100.3
Q ss_pred CCccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
..++|++..++.+..++.. .....|.|+|++|+|||++|+.+++.. ...| +.+.++.......+. .++
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~~-~~~ 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDLA-AIL 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHHH-HHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHHH-HHH
Confidence 4689999999999888853 344578899999999999999998876 2232 233332221111111 111
Q ss_pred HHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc--cccccCC------------------CCCCCCCcEE
Q 048126 201 RRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD--LTKVGVP------------------FPDPENKSKI 260 (863)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~~~------------------l~~~~~gs~I 260 (863)
.+ ..+..+|++|+++.... ...+... .....++..+
T Consensus 102 ----------------------~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 102 ----------------------TN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ----------------------HT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ----------------------Hh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 10 13556888888875311 1111000 0001123456
Q ss_pred EEecCchhh-hhcc--cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 261 VFTTRFLEI-CGAM--KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 261 ivTtR~~~v-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
|.||..... .... .....+.+++++.++...++.+.+..... .--.+....|++.+.|.|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 665554322 1111 12357899999999999999887654321 1124567888889999986555443
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.17 E-value=3.1e-05 Score=79.38 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=99.1
Q ss_pred CCccchhHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLG---E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
..++|.+..++.+.+++. . ...+.+.|+|++|+|||++|+.+++.. ... .+.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh-
Confidence 568999988887766542 1 234568899999999999999999987 222 344444332110
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc-------------c----cccccCCCC--CC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV-------------D----LTKVGVPFP--DP 254 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~----~~~~~~~l~--~~ 254 (863)
+...........+.......+.+|++||++... . +..+...+. ..
T Consensus 79 ----------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 79 ----------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ----------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ----------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 000011112222333333467899999997531 0 111111111 11
Q ss_pred CCCcEEEEecCchhhh-hcc----cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh-HHHH
Q 048126 255 ENKSKIVFTTRFLEIC-GAM----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL-ALIT 328 (863)
Q Consensus 255 ~~gs~IivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~ 328 (863)
..+..||.||...... ... .....+.++..+.++-.+++...+..... ..........+++.+.|.+- .+..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHH
Confidence 2356677777654321 111 12346788999999999999887654321 12222234778888887654 4444
Q ss_pred HH
Q 048126 329 IG 330 (863)
Q Consensus 329 ~~ 330 (863)
+.
T Consensus 221 l~ 222 (262)
T 2qz4_A 221 IC 222 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 177
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=1.3e-06 Score=82.03 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCCceEEEcCCcccccceeccccccccccccccCcccEEEEeccCCCCCC--chhhcc----CCCcEEEEeccccchhhc
Q 048126 691 HNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSLHTVKVGFCFKLKDL--TWLVFA----PSLKSIVVLSCCNMEQII 764 (863)
Q Consensus 691 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l----~~L~~L~l~~~~~l~~i~ 764 (863)
.+|++|++++|. +++...... ..+++|++|+|++|..+++- ..+..+ ++|++|+|++|+.+++-+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L--------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM--------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG--------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHh--------cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 367777777775 443222221 34777888888887766642 233332 468888888887777653
Q ss_pred cccccccccCCCCCCCCcCCccceeccCCCcccccc
Q 048126 765 KAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCI 800 (863)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i 800 (863)
. ..+..+|+|+.|+|++|+.+++.
T Consensus 132 l------------~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 132 I------------IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp H------------HHGGGCTTCCEEEEESCTTCCCH
T ss_pred H------------HHHhcCCCCCEEECCCCCCCCch
Confidence 2 12345788888888888877763
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=3e-06 Score=91.39 Aligned_cols=195 Identities=8% Similarity=0.112 Sum_probs=103.9
Q ss_pred CCccchhHHHHHHHHHh-cCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCC---CCCE--------------------E
Q 048126 126 EPTVGLESMFDKVWRCL-GEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPN---DFDV--------------------V 181 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~F~~--------------------~ 181 (863)
..++|.+..++.+.+++ ..++...+.|+|+.|+||||+|+.++........ .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45799999999999998 6655444999999999999999999885411110 0110 1
Q ss_pred EEEEeCCcc-CHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCc
Q 048126 182 IWVVVSKDL-QLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKS 258 (863)
Q Consensus 182 ~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs 258 (863)
+.+..+... ......++++..+..... ..... .+ ..+.+++-++|+|++.... ....+...+.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 111111100 000012222222211000 00000 00 0023467799999997632 1222222221122456
Q ss_pred EEEEecCchh-hhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 259 KIVFTTRFLE-ICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 259 ~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
.+|++|.+.. +... ......+++.+++.++..+.+.+.+.......+ -.+....|++.++|.+-.+..+.
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 7777776532 2111 112257899999999999999887654321111 03567889999999987665544
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.14 E-value=6.7e-06 Score=86.76 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=85.8
Q ss_pred CccchhHHHHHHHHHhc---------------CCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC
Q 048126 127 PTVGLESMFDKVWRCLG---------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ 191 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 191 (863)
.++|.+..++.|.+++. ......+.|+|++|+|||++|+.+++.... .......-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH--
Confidence 37899888888876653 234457899999999999999988887621 111111112333211
Q ss_pred HHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc-----------cccccccCCCCCCCCCcEE
Q 048126 192 LEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER-----------VDLTKVGVPFPDPENKSKI 260 (863)
Q Consensus 192 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~~~l~~~~~gs~I 260 (863)
.+... ............+... +.-+|++|+++.. .....+...+.....+..|
T Consensus 109 ----------~l~~~---~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 109 ----------DLVGQ---YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp ----------GTCCS---STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred ----------Hhhhh---cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 01000 0111111122222221 4569999999743 1122222222233446678
Q ss_pred EEecCchhh----------hhcccccceEeecCCChHHHHHHHHHHhcc
Q 048126 261 VFTTRFLEI----------CGAMKAHEFLKVECLGPEDAWRLFRENLRR 299 (863)
Q Consensus 261 ivTtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 299 (863)
|.||..... ... ....+.+++++.++-.+++...+..
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 888865432 121 2257899999999999999887654
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.11 E-value=6.8e-05 Score=81.16 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=102.6
Q ss_pred CCccchhHHHHH---HHHHhcCCCc--cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeC----CccCHHHHH
Q 048126 126 EPTVGLESMFDK---VWRCLGEEQV--GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVS----KDLQLEKIQ 196 (863)
Q Consensus 126 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s----~~~~~~~~~ 196 (863)
+.+||++..++. +.+.+..... +.+.|+|++|+|||++|+.+++.. . .... .+.+... .........
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~--~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-G--PDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-C--SSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-c--ccCC-cccccchhhhhcccchhHHH
Confidence 568999988776 4555554433 589999999999999999999988 2 2211 1222321 222333333
Q ss_pred HHHHHHh-CC--------------------CCc-------cccCCChhHHHHHHHHHh-----ccC----cEEEEEeccC
Q 048126 197 EKIGRRI-GF--------------------LDE-------SWKNGSLEDKASDILRIL-----SKK----KFLLLLDDIW 239 (863)
Q Consensus 197 ~~i~~~l-~~--------------------~~~-------~~~~~~~~~~~~~l~~~l-----~~k----r~LlVlDdv~ 239 (863)
....... +. ... ........+....+.+.. .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3333221 00 000 000011222222222221 123 3599999997
Q ss_pred Ccc--ccccccCCCCCCCCCcEEEEecC-c----------------hhhhhcccccceEeecCCChHHHHHHHHHHhccc
Q 048126 240 ERV--DLTKVGVPFPDPENKSKIVFTTR-F----------------LEICGAMKAHEFLKVECLGPEDAWRLFRENLRRD 300 (863)
Q Consensus 240 ~~~--~~~~~~~~l~~~~~gs~IivTtR-~----------------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 300 (863)
... ....+...+...... .++++|. . +.+...+ ..+.+++++.++..+++.+.+...
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHHHHc
Confidence 642 122222222222222 2333332 1 1222222 347999999999999999877543
Q ss_pred ccCCCCChHHHHHHHHHHhC-CchhHHHHHH
Q 048126 301 VLDNHPDIPELARSVAKEYA-GLPLALITIG 330 (863)
Q Consensus 301 ~~~~~~~~~~~~~~i~~~c~-glPlai~~~~ 330 (863)
.. .--.+....|++.+. |.|-.+..+.
T Consensus 276 ~~---~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 276 DV---EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TC---CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CC---CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 21 122456788899987 7776555443
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.09 E-value=2.3e-05 Score=83.27 Aligned_cols=176 Identities=10% Similarity=0.043 Sum_probs=100.7
Q ss_pred CCccchhHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
++++|.+..++.+.+++..+.. +++.+.|++|+|||++|+.+++.. . ..++.+..+.. ....+ +..+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i-~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFV-RGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHH-HTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHH-HHHHHHHH
Confidence 5689999999999999986554 577778889999999999999876 1 23445554432 22222 21111110
Q ss_pred CCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc---ccccccCCCCCCCCCcEEEEecCchhh-hhc-ccccceE
Q 048126 205 FLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV---DLTKVGVPFPDPENKSKIVFTTRFLEI-CGA-MKAHEFL 279 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~~~~~l~~~~~gs~IivTtR~~~v-~~~-~~~~~~~ 279 (863)
... ...+++-+||+||++... ....+...+.....+.++|+||....- ... ......+
T Consensus 98 ~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 98 SAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp HBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred hhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 000 012367899999998643 222222222222245678887766431 110 1112468
Q ss_pred eecCCChHHHHHHHH-------HHhcccccCCCCChHHHHHHHHHHhCCchhHHHH
Q 048126 280 KVECLGPEDAWRLFR-------ENLRRDVLDNHPDIPELARSVAKEYAGLPLALIT 328 (863)
Q Consensus 280 ~l~~L~~~e~~~lf~-------~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 328 (863)
.+++++.++-.+++. +.+.......++ .+....|++.++|.+..+..
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 999999888443322 222222111111 26678888999887764443
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=0.00013 Score=76.97 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=102.4
Q ss_pred CCccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
.+++|.+..++.|.+.+.. ...+.|.++|++|+|||+||+.+++.. . .. ..+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 4578999998888877631 134678999999999999999999876 1 11 233344332110
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHH-HhccCcEEEEEeccCCccc-------------cccccCC---CCCCCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILR-ILSKKKFLLLLDDIWERVD-------------LTKVGVP---FPDPEN 256 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~-------------~~~~~~~---l~~~~~ 256 (863)
.+.... +.....+.+ .-..++.+|++|+++.... ...+... +.....
T Consensus 85 ---------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 001112 222222322 2335788999999975310 0011111 111224
Q ss_pred CcEEEEecCchhh-----hhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc-hhHHHHHH
Q 048126 257 KSKIVFTTRFLEI-----CGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL-PLALITIG 330 (863)
Q Consensus 257 gs~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 330 (863)
+..||.||..... .. .....+.++..+.++-.++++..+...... --......|++.+.|. +-.+..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4556656654322 22 223467888889999999998876543211 1234568888999886 44455554
Q ss_pred H
Q 048126 331 R 331 (863)
Q Consensus 331 ~ 331 (863)
.
T Consensus 224 ~ 224 (322)
T 1xwi_A 224 R 224 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.08 E-value=1.3e-05 Score=87.65 Aligned_cols=302 Identities=13% Similarity=0.064 Sum_probs=144.2
Q ss_pred cccccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCC
Q 048126 490 IQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (863)
Q Consensus 490 ~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (863)
+.++.+|+.+.+.. .+..+. .+.+|++|+.+++..+ ++.++...|.++..|+.+.+..+ ....-...+.++..+.
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 44566777777753 344442 3466777777777644 56666666777777776665544 2211122233332222
Q ss_pred eEEccCCCccccc-hhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEE
Q 048126 568 HLDLSGTAITHLP-IELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALT 646 (863)
Q Consensus 568 ~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~ 646 (863)
..... .+..+. ..+.++.+|+.+.+.++ +..++...+..+.+|+.+.+..+-..- ....+.++..|+.+.
T Consensus 144 ~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I-----~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 144 ITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKII-----RDYCFAECILLENME 214 (394)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEE-----CTTTTTTCTTCCBCC
T ss_pred cccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEe-----Cchhhccccccceee
Confidence 11111 122222 24667777777777653 355666666777777777664431110 011233344444443
Q ss_pred EEEcChHHHHHHhhhhhhhhcceeeeeccccCCCcccccchhhcCCCceEEEcCCcccccceeccccccccccccccCcc
Q 048126 647 ITLKSWEALQELLISQELQRCTQSLFLRCFNDSKSLDIFCLACLHNLNKLYVAGRKHLEDFQMTVQRSSVNQLARGFHSL 726 (863)
Q Consensus 647 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~l~~L 726 (863)
+..+.. .+. ........|+.+.+... ...+....+..+.+|+.+.+..+ ...+....+ ..+++|
T Consensus 215 ~~~~~~-~i~---~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F--------~~~~~l 278 (394)
T 4fs7_A 215 FPNSLY-YLG---DFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN--KLRIGGSLF--------YNCSGL 278 (394)
T ss_dssp CCTTCC-EEC---TTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT--TCEECSCTT--------TTCTTC
T ss_pred cCCCce-Eee---hhhcccCCCceEEECCC--ceecccccccccccceeEEcCCC--cceeecccc--------cccccc
Confidence 321100 000 00111235555555321 22222334556677777777543 222222221 235556
Q ss_pred cEEEEeccCCCCCCchhhccCCCcEEEEeccccchhhccccccccccCCCCCCCCcCCccceeccCCCccccccccC-CC
Q 048126 727 HTVKVGFCFKLKDLTWLVFAPSLKSIVVLSCCNMEQIIKAEKLSQLHHHPERKKSVFAKLQFLSLENLRNLCCINWE-AL 805 (863)
Q Consensus 727 ~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~ 805 (863)
+.+.+.... +.. ..+..+++|+.+.+.. .++.+. ...+..+.+|+.+.|.+ .++.+... ..
T Consensus 279 ~~~~~~~~~-i~~-~~F~~~~~L~~i~l~~--~i~~I~------------~~aF~~c~~L~~i~lp~--~v~~I~~~aF~ 340 (394)
T 4fs7_A 279 KKVIYGSVI-VPE-KTFYGCSSLTEVKLLD--SVKFIG------------EEAFESCTSLVSIDLPY--LVEEIGKRSFR 340 (394)
T ss_dssp CEEEECSSE-ECT-TTTTTCTTCCEEEECT--TCCEEC------------TTTTTTCTTCCEECCCT--TCCEECTTTTT
T ss_pred ceeccCcee-ecc-cccccccccccccccc--ccceec------------hhhhcCCCCCCEEEeCC--cccEEhHHhcc
Confidence 665554321 110 1233456677766643 244431 23455566777776642 34544432 22
Q ss_pred CCCCcceEeecCCCCCCCCCCCCCC--CCCCceEEE
Q 048126 806 AFPNLKEIRVEGCPKLFKLPLDSNS--AKGCKVVIK 839 (863)
Q Consensus 806 ~~p~L~~L~i~~C~~L~~lp~~~~~--~~L~~l~i~ 839 (863)
.+.+|+.+.+.. +++.++..... .+|+.+.+.
T Consensus 341 ~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 341 GCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 356666666632 35555543322 566666665
No 184
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=8.3e-06 Score=87.42 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=30.6
Q ss_pred hhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccc-cchhhh--cCCCCCEEecC
Q 048126 534 DFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITH-LPIELQ--KLVNLKCLNLE 595 (863)
Q Consensus 534 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~~~--~l~~L~~L~l~ 595 (863)
.++..+++|+.|+|+++... .+|. + .+++|++|++..|.+.. -...+. .+++|++|+|+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 33556667777777665222 3333 3 25666666666655431 111222 56666666654
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=1.2e-06 Score=94.08 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=73.5
Q ss_pred CCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCcccc--ccCCCCeEEccCC--C------ccccchh
Q 048126 513 PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGIS--TLVSLEHLDLSGT--A------ITHLPIE 582 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~--~l~~L~~L~L~~~--~------l~~lp~~ 582 (863)
..+|+|+.|.+++|.-..+++ + .+++|+.|+|..|.+.......++ .+++|++|+|+.+ . +..+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 567888888888773123333 3 377888888887743322222333 6788888887531 1 2222222
Q ss_pred h--hcCCCCCEEecCCccccCCCcHHHh--hcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEEEcC
Q 048126 583 L--QKLVNLKCLNLEYMYNLNQFPRLVM--SAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTITLKS 651 (863)
Q Consensus 583 ~--~~l~~L~~L~l~~~~~l~~lp~~~~--~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 651 (863)
+ ..+++|++|++++|......+..+. ..+++|++|+++.|.+...+.......+.++++|+.|+++.|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 2 2467788887777632211222211 2466777777766654432111222233455666666666554
No 186
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.07 E-value=5.1e-05 Score=81.54 Aligned_cols=179 Identities=15% Similarity=0.063 Sum_probs=102.8
Q ss_pred CCccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
..++|.+..++.|.+.+.. ...+.|.|+|++|+|||++|+.+++.. .. ..+.+.++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhcc-
Confidence 4589999999999888741 345688999999999999999999876 22 2344544322110
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHH-HhccCcEEEEEeccCCcc-------------ccccccCCCC----CCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILR-ILSKKKFLLLLDDIWERV-------------DLTKVGVPFP----DPE 255 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~-------------~~~~~~~~l~----~~~ 255 (863)
...........+.. .-..++.+|+||+++... ....+...+. ...
T Consensus 157 -----------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 157 -----------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp -----------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred -----------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 00001111222222 223567899999995321 0111111111 112
Q ss_pred CCcEEEEecCchh-hhhcc--cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCC-chhHHHHHHH
Q 048126 256 NKSKIVFTTRFLE-ICGAM--KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAG-LPLALITIGR 331 (863)
Q Consensus 256 ~gs~IivTtR~~~-v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 331 (863)
.+..||.||.... +.... .....+.+...+.++..+++...+...... --.+....|++.+.| .+-.+..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455665665432 21111 123467788899999999988776443211 124567889999988 4556665543
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=4.4e-06 Score=78.50 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=45.7
Q ss_pred CccceEEccCCccccccchhhhcCCCccEEEccCCCcccc-CCcccccc----CCCCeEEccCC-Cccc--cchhhhcCC
Q 048126 516 PHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWK-LPSGISTL----VSLEHLDLSGT-AITH--LPIELQKLV 587 (863)
Q Consensus 516 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~l----~~L~~L~L~~~-~l~~--lp~~~~~l~ 587 (863)
.+|+.|++++|.++...-..+.+|++|++|+|++|..++. --..++.+ ++|++|+|++| +|+. + ..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 4577777777766554444456677777777777643322 11223332 24566666655 3541 2 1234455
Q ss_pred CCCEEecCCccccCC
Q 048126 588 NLKCLNLEYMYNLNQ 602 (863)
Q Consensus 588 ~L~~L~l~~~~~l~~ 602 (863)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 555555555544443
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.01 E-value=6.3e-05 Score=79.99 Aligned_cols=171 Identities=11% Similarity=0.092 Sum_probs=100.5
Q ss_pred hHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHhhhcCCC-------------------CCCCEEEEEEeC---C
Q 048126 132 ESMFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAP-------------------NDFDVVIWVVVS---K 188 (863)
Q Consensus 132 ~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~s---~ 188 (863)
+...+.+.+.+..++ .+.+.++|+.|+|||++|+.+++...... .+++. .++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccCC
Confidence 455677777777665 45789999999999999999998762111 01221 222211 1
Q ss_pred ccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCc
Q 048126 189 DLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRF 266 (863)
Q Consensus 189 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~ 266 (863)
...+..+ +++.+.+.... ..+++-++|+|+++... ....+...+.....++.+|++|.+
T Consensus 87 ~~~i~~i-r~l~~~~~~~~------------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHA------------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCC------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred CCCHHHH-HHHHHHHhhcc------------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 1112111 22222221110 12467899999997642 223333333333456777777665
Q ss_pred hh-hhhc-ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 267 LE-ICGA-MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 267 ~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
.. +... ......+.+.+++.++..+.+.+... --.+.+..+++.++|.|..+..+.
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--------MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--------CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 43 2211 11234789999999999999987751 113456789999999997765543
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.01 E-value=9.2e-05 Score=78.34 Aligned_cols=178 Identities=14% Similarity=0.085 Sum_probs=102.5
Q ss_pred CCccchhHHHHHHHHHhc----------C--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLG----------E--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
..++|.+..++.|.+++. . ...+-|.++|++|+|||++|+.+++.. ... .+.|..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 457999999999998872 1 124578999999999999999999987 222 2333321
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHH-HHhccCcEEEEEeccCCccc-------------ccccc---CCCCCCCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDIL-RILSKKKFLLLLDDIWERVD-------------LTKVG---VPFPDPEN 256 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~-------------~~~~~---~~l~~~~~ 256 (863)
.+ .... .. ..+.....+. ..-..++.+|++|+++.... ...+. ..+.....
T Consensus 86 ~l----~~~~-------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DL----VSKW-------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HH----HTTT-------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HH----hhcc-------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 1000 00 1122222222 22234678999999974311 11111 11112234
Q ss_pred CcEEEEecCchhhhh-c--ccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc-hhHHHHHH
Q 048126 257 KSKIVFTTRFLEICG-A--MKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL-PLALITIG 330 (863)
Q Consensus 257 gs~IivTtR~~~v~~-~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 330 (863)
+..||.||....... . -.....+.++..+.++-.+++...+..... .--......|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 566666776543211 0 022346778889999999999988764321 11234567888888874 54555444
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.00 E-value=7.3e-06 Score=79.07 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=41.7
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999987667788999999999999999999886
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.98 E-value=5.1e-05 Score=80.50 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=97.0
Q ss_pred CCcc-chh--HHHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 048126 126 EPTV-GLE--SMFDKVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~v-Gr~--~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
+.|| |.. .....+..++..+ ....+.|+|++|+||||||+.+++.... ..+ .++++++. .+...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~--~~~-~~~~i~~~------~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK--RGY-RVIYSSAD------DFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH--TTC-CEEEEEHH------HHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH--CCC-EEEEEEHH------HHHHHHH
Confidence 4455 532 3344455555443 3467889999999999999999987621 122 34555432 3333333
Q ss_pred HHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc---c-ccccCCCCC-CCCCcEEEEecCchh-------
Q 048126 201 RRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD---L-TKVGVPFPD-PENKSKIVFTTRFLE------- 268 (863)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~IivTtR~~~------- 268 (863)
..+.. .... .+.+.+ .+.-+|++||++.... + ..+...+.. ...|..||+||.+..
T Consensus 82 ~~~~~-------~~~~----~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKK-------GTIN----EFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHH-------TCHH----HHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHc-------CcHH----HHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 33211 0111 122222 2467999999976431 1 122111110 123557888776431
Q ss_pred --hhhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhH
Q 048126 269 --ICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLA 325 (863)
Q Consensus 269 --v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 325 (863)
+...+.....+.+++ +.++..+++...+...... --.+....|++.+ |..-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~---l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE---LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHhC-CCHHH
Confidence 222223335689999 9999999999887543211 1245677888888 76543
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=6.3e-06 Score=79.51 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=42.3
Q ss_pred CCCCccceEEccCC-cccccc----chhhhcCCCccEEEccCCCcccc----CCccccccCCCCeEEccCCCccc-----
Q 048126 513 PTCPHLLSLFLSDN-SLKMIA----GDFFQFMPSLRVFNMSNNHLLWK----LPSGISTLVSLEHLDLSGTAITH----- 578 (863)
Q Consensus 513 ~~~~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~L~~~~l~~----- 578 (863)
..++.|++|+|++| .+.... ...+...++|++|+|++|.+... +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45666777777766 554311 11234456666666666643221 23333444556666666665542
Q ss_pred cchhhhcCCCCCEEec
Q 048126 579 LPIELQKLVNLKCLNL 594 (863)
Q Consensus 579 lp~~~~~l~~L~~L~l 594 (863)
+...+...++|++|++
T Consensus 113 l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 113 LVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHGGGGCSSCCEEEC
T ss_pred HHHHHHhCCCceEEEe
Confidence 3444444455555555
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.96 E-value=8.1e-05 Score=79.79 Aligned_cols=176 Identities=15% Similarity=0.087 Sum_probs=101.1
Q ss_pred CCccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
..++|.+..++.|.+.+.. ...+-|.++|++|+|||+||+.+++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4589999999999887721 123458899999999999999999987 222 2333222
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHH-HHHhccCcEEEEEeccCCccc-------------cccccCC---CCCCCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDI-LRILSKKKFLLLLDDIWERVD-------------LTKVGVP---FPDPEN 256 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~-------------~~~~~~~---l~~~~~ 256 (863)
.+. ... .... +.....+ ...-..++.+|+||+++.... ...+... +.....
T Consensus 119 ~l~----~~~-------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 DLV----SKW-------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HHH----SCC----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HHh----hhh-------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 111 100 1111 2222222 222335788999999975321 1111111 111234
Q ss_pred CcEEEEecCchhh-----hhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCC-chhHHHHHH
Q 048126 257 KSKIVFTTRFLEI-----CGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAG-LPLALITIG 330 (863)
Q Consensus 257 gs~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 330 (863)
+..||.||..... .. .....+.++..+.++-.+++...+...... --......|++.+.| .+-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~---~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSV---LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566666654422 22 233567888899999999998877543211 113456788899988 454555544
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=4.7e-05 Score=81.39 Aligned_cols=180 Identities=14% Similarity=0.214 Sum_probs=101.6
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHhC
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 204 (863)
..++|.+..++.+...+..++.+.+.++|+.|+||||+|+.+++... ...+. .+..+..+.......+.. .+..+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~~ 101 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRN-QIKDFA 101 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHT-HHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHH-HHHHHH
Confidence 34689999999999998877655589999999999999999998862 11111 122222222222222211 111110
Q ss_pred CCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccCCCCCCCCCcEEEEecCchh-hhhc-ccccceEe
Q 048126 205 FLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGVPFPDPENKSKIVFTTRFLE-ICGA-MKAHEFLK 280 (863)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~ 280 (863)
... ..+.+.+-++|+|+++... ....+...+.......++|++|.... +... ......+.
T Consensus 102 ~~~----------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 102 STR----------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp HBC----------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred hhc----------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEe
Confidence 000 0011346789999996531 22222222212224566777665432 2111 11123678
Q ss_pred ecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHH
Q 048126 281 VECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALI 327 (863)
Q Consensus 281 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 327 (863)
+.+++.++..+.+.+.+...... --.+..+.|++.++|.+--+.
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~---i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKLK---LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCC---BCHHHHHHHHHHHTTCHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 99999999998888776332211 114567888899999876443
No 195
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.93 E-value=0.00019 Score=78.05 Aligned_cols=179 Identities=12% Similarity=0.062 Sum_probs=99.3
Q ss_pred CCccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
..++|.+..++.|.+++.. ...+-|.|+|++|+|||++|+.+++.. .. ..+.+.++.-.+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4589999999999988721 234678999999999999999999876 22 223343332211
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc-------------cccccCCC---C-CCCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD-------------LTKVGVPF---P-DPEN 256 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~~~l---~-~~~~ 256 (863)
.. ...........+...-...+.+|+||+++.... ...+...+ . ....
T Consensus 187 ~~---------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 KY---------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred cc---------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 001111111222222234568999999964310 00111100 0 1122
Q ss_pred CcEEEEecCchhhh-hc-c-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh-HHHHHH
Q 048126 257 KSKIVFTTRFLEIC-GA-M-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL-ALITIG 330 (863)
Q Consensus 257 gs~IivTtR~~~v~-~~-~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 330 (863)
...||.||...... .. . .....+.+...+.++-.+++...+.... ..-..+....|++.+.|..- ++..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~---~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG---SPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC---CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35556566543221 11 1 1224578889999999999988775432 11224567788999988544 555543
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.93 E-value=0.00032 Score=77.58 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=100.9
Q ss_pred CCccchhHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLG------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
..++|.+..++.|.+.+. ....+.|.++|++|+|||+||+.+++.. . . .-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~--~----~~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N--N----STFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C--S----SEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C--C----CCEEEEeHHH---
Confidence 457899999999988773 1234678999999999999999999876 1 1 1233333221
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc-------------cccccCCCCC---CCCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD-------------LTKVGVPFPD---PENK 257 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~~~l~~---~~~g 257 (863)
+.... .+. .... ....+...-..++.+|+||+++.... ...+...+.. ...+
T Consensus 204 -l~~~~---~g~-----~~~~---~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LVSKW---LGE-----SEKL---VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCT---HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HHhhh---cch-----HHHH---HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11100 010 1111 11222222235788999999975310 1112222211 2345
Q ss_pred cEEEEecCchhhh-hc-c-cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc-hhHHHHHH
Q 048126 258 SKIVFTTRFLEIC-GA-M-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL-PLALITIG 330 (863)
Q Consensus 258 s~IivTtR~~~v~-~~-~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 330 (863)
..||.||...... .. . .....+.++..+.++-..+|...+...... --......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS---LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6667677654321 10 1 223467788888888889998876543211 1134567888999884 44555544
No 197
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=5e-06 Score=84.39 Aligned_cols=106 Identities=26% Similarity=0.276 Sum_probs=67.1
Q ss_pred CCCCccce--EEccCCcccccc---chhhhcCCCccEEEccCCCccc--cCCccccccCCCCeEEccCCCccccchhhhc
Q 048126 513 PTCPHLLS--LFLSDNSLKMIA---GDFFQFMPSLRVFNMSNNHLLW--KLPSGISTLVSLEHLDLSGTAITHLPIELQK 585 (863)
Q Consensus 513 ~~~~~L~~--L~l~~~~l~~~~---~~~~~~l~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~ 585 (863)
...+.|.. ++++.|....++ .....++++|+.|+|++|.+.+ .+|..+..+++|++|+|++|.|+.+ ..+..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh
Confidence 33444544 455555332222 2223567888888888885544 4556677888888888888888866 23455
Q ss_pred CC--CCCEEecCCccccCCCcH------HHhhcCCCCcEEEe
Q 048126 586 LV--NLKCLNLEYMYNLNQFPR------LVMSAFSKLQVLRI 619 (863)
Q Consensus 586 l~--~L~~L~l~~~~~l~~lp~------~~~~~L~~L~~L~l 619 (863)
+. +|++|++++|+....+|. .++..+++|+.|+-
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 54 888888888854443441 24667778877763
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.92 E-value=0.00024 Score=74.17 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=100.7
Q ss_pred CCccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
..++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.+.++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 4589999999999888732 235688999999999999999999876 22 223444332110
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHH-HHHhccCcEEEEEeccCCcccc-------------cccc---CCCCC--C
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDI-LRILSKKKFLLLLDDIWERVDL-------------TKVG---VPFPD--P 254 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~~-------------~~~~---~~l~~--~ 254 (863)
. ...........+ ......++.+|++|+++....- ..+. ..++. .
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 001112222222 2223356789999999653110 0010 11111 1
Q ss_pred CCCcEEEEecCchh-----hhhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchh-HHHH
Q 048126 255 ENKSKIVFTTRFLE-----ICGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPL-ALIT 328 (863)
Q Consensus 255 ~~gs~IivTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~ 328 (863)
+.+..||.||.... +... ....+.++..+.++-.+++...+..... +--.+....+++.+.|.+- ++..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHH
Confidence 23455666776543 2221 2245677778888888888877644321 1123557788999988875 4544
Q ss_pred HH
Q 048126 329 IG 330 (863)
Q Consensus 329 ~~ 330 (863)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 199
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.89 E-value=0.00016 Score=79.06 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=77.3
Q ss_pred cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccch-hhhcCCCC
Q 048126 511 ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPI-ELQKLVNL 589 (863)
Q Consensus 511 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L 589 (863)
.+..|.+|+.+.+..+ ++.+....|.+|.+|+.++|..+ ....-...+.++.+|+.+.+..+ +..++. .+..+..+
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 3578889999998744 77888888999999999998766 33223446677788887766543 444432 34444433
Q ss_pred CEEecCCccccCCCcHHHhhcCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEE
Q 048126 590 KCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTI 647 (863)
Q Consensus 590 ~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l 647 (863)
....... +..+....+..+++|+.+.+..+...- ....+.++.+|+.+.+
T Consensus 143 ~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~I-----~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 143 EITIPEG---VTVIGDEAFATCESLEYVSLPDSMETL-----HNGLFSGCGKLKSIKL 192 (394)
T ss_dssp EEECCTT---CCEECTTTTTTCTTCCEEECCTTCCEE-----CTTTTTTCTTCCBCCC
T ss_pred ccccCcc---ccccchhhhcccCCCcEEecCCcccee-----ccccccCCCCceEEEc
Confidence 3333222 344555557788888888875432211 1122445566665554
No 200
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.87 E-value=0.00014 Score=79.58 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=50.4
Q ss_pred CCCCCccceEEccCC---ccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccch-hhhcCC
Q 048126 512 TPTCPHLLSLFLSDN---SLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPI-ELQKLV 587 (863)
Q Consensus 512 ~~~~~~L~~L~l~~~---~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~~~~l~ 587 (863)
+.+|.+|+.+.+..+ .++.+....|.++..|+.+.+..+ ....-...+..+.+|+.+.+..+ +..++. .+..+.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccc
Confidence 355666666666544 245555555666666665555444 22222234455556666665432 333322 345555
Q ss_pred CCCEEecCCccccCCCcHHHhhcCCCCcEEEe
Q 048126 588 NLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRI 619 (863)
Q Consensus 588 ~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l 619 (863)
+|+.+.+..+ +..+....+.. .+|+.+.+
T Consensus 161 ~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~i 189 (394)
T 4gt6_A 161 SLHTVTLPDS--VTAIEERAFTG-TALTQIHI 189 (394)
T ss_dssp TCCEEECCTT--CCEECTTTTTT-CCCSEEEE
T ss_pred ccccccccce--eeEeccccccc-cceeEEEE
Confidence 6666665442 34444433322 34555554
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.81 E-value=0.00028 Score=73.72 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=98.9
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
.+++|.+..++++.+++.. ...+.|.|+|++|+|||++|+.+++.. ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 4578999988888877642 345678999999999999999999986 222 22222 2
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc------------c----cccccCCCC--CC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV------------D----LTKVGVPFP--DP 254 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~~~l~--~~ 254 (863)
..+..... +. ........+.......+.+|++|+++... . ...+...+. ..
T Consensus 83 ~~l~~~~~---g~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMWF---GE--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHHH---TT--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhhc---Cc--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 23322221 11 11222333333444578999999997421 0 111111111 12
Q ss_pred CCCcEEEEecCchhhh-hc-c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhH
Q 048126 255 ENKSKIVFTTRFLEIC-GA-M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLA 325 (863)
Q Consensus 255 ~~gs~IivTtR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 325 (863)
..+..||.||...... .. . .-...+.++..+.++-.++++..+.......+..+ ..+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 2456677777655321 11 1 12346889999999988999877654332222233 3455566666543
No 202
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.79 E-value=0.00015 Score=80.86 Aligned_cols=150 Identities=14% Similarity=0.188 Sum_probs=82.4
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCC--CCCC-C-EEEEEEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGA--PNDF-D-VVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F-~-~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
.++|||+.+++.+...+......-+.++|.+|+|||++|+.++...... .... + ..+.+.++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 4689999999999999976655667899999999999999999886210 0001 1 12222222 0
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhh------h-hccc
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEI------C-GAMK 274 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v------~-~~~~ 274 (863)
.. ...........+...-..++.+|++| ........+...+. ....++|.+|..... . ....
T Consensus 247 ~~-------~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 KY-------RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cc-------cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 00 00001112222233333567889999 22222222333332 123556665554431 1 1111
Q ss_pred ccceEeecCCChHHHHHHHHHHhcc
Q 048126 275 AHEFLKVECLGPEDAWRLFRENLRR 299 (863)
Q Consensus 275 ~~~~~~l~~L~~~e~~~lf~~~~~~ 299 (863)
-..++.++..+.++..+++...+..
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHHH
Confidence 2236889999999999999876543
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=9.8e-05 Score=76.93 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCC-CCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCC
Q 048126 130 GLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAP-NDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLD 207 (863)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 207 (863)
|-+..++.+.+.+..++.+.+.++|+.|+||||+|+.+++...... .+.+. .++..+. ..++..+ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 3455677788888776677889999999999999999987531111 23343 4454432 3333333 33444443211
Q ss_pred ccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--cccccccCCCCCCCCCcEEEEecCch-hhhhcccccceEeecCC
Q 048126 208 ESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFL-EICGAMKAHEFLKVECL 284 (863)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~~~~~~~~~l~~L 284 (863)
..+++-++|+|+++.. .....+...+......+.+|++|.+. .+....... .+++.++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 1245678999999764 22333433333334567777666543 343333444 8999999
Q ss_pred ChHHHHHHHHHHh
Q 048126 285 GPEDAWRLFRENL 297 (863)
Q Consensus 285 ~~~e~~~lf~~~~ 297 (863)
++++..+.+.+.+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.75 E-value=0.00058 Score=72.49 Aligned_cols=171 Identities=20% Similarity=0.172 Sum_probs=93.2
Q ss_pred CCccchhHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
..++|.+..++.+...+.. .....+.++|+.|+||||||+.+++.. ...|. .....-.....+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~~~------ 92 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQGD------ 92 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSHHH------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCHHH------
Confidence 4578988888877766643 234678999999999999999999987 22221 111110011111
Q ss_pred HHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--ccccccC---CCC------CC---------CCCcEE
Q 048126 201 RRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--DLTKVGV---PFP------DP---------ENKSKI 260 (863)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~---~l~------~~---------~~gs~I 260 (863)
... +...+ .++-++++|++.... ..+.+.. ... .. -....+
T Consensus 93 -----------------l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 93 -----------------MAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -----------------HHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -----------------HHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 111 11111 234466778775421 1111100 000 00 011122
Q ss_pred E-EecCchhhhhccc--ccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 048126 261 V-FTTRFLEICGAMK--AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITIG 330 (863)
Q Consensus 261 i-vTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 330 (863)
+ .|++...+...+. ....+.+++.+.++-.+++.+.+..... .--.+.+..|++.+.|.|-.+..+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 2 3555443321111 1235789999999999999987643221 1225678999999999997654443
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=3e-05 Score=74.71 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=73.5
Q ss_pred hhhcCCCccEEEccCC-Ccccc----CCccccccCCCCeEEccCCCcc-----ccchhhhcCCCCCEEecCCccccCC--
Q 048126 535 FFQFMPSLRVFNMSNN-HLLWK----LPSGISTLVSLEHLDLSGTAIT-----HLPIELQKLVNLKCLNLEYMYNLNQ-- 602 (863)
Q Consensus 535 ~~~~l~~L~~L~L~~~-~~~~~----lp~~i~~l~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~-- 602 (863)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.|. .+...+...++|++|+|++| .+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 3566777888888777 44322 3445556677888888887775 34555666677888888777 3332
Q ss_pred ---CcHHHhhcCCCCcEEEe--eccccccCchhhHHHHHcCCccCceEEEEEcChHH
Q 048126 603 ---FPRLVMSAFSKLQVLRI--LKSNVLFGGHQFLVEELMGMKHLMALTITLKSWEA 654 (863)
Q Consensus 603 ---lp~~~~~~L~~L~~L~l--~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 654 (863)
+.. .+...++|++|++ .+|.+...+.......+...++|+.|+++.+....
T Consensus 110 ~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 222 2455667888887 56665543333344556666777788877776543
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=5.3e-05 Score=74.18 Aligned_cols=120 Identities=22% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCccchh----HHHHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHH
Q 048126 126 EPTVGLE----SMFDKVWRCLGEE----QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQE 197 (863)
Q Consensus 126 ~~~vGr~----~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 197 (863)
+.+++.+ ..++.+.+++... ....+.|+|++|+|||+||+.+++... .....++|++++ .+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFR 95 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHH
Confidence 4566543 3445555555432 126889999999999999999999872 223345666543 3444
Q ss_pred HHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCc--ccccc--ccC-CCCC-CCCCcEEEEecCc
Q 048126 198 KIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWER--VDLTK--VGV-PFPD-PENKSKIVFTTRF 266 (863)
Q Consensus 198 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~--~~~-~l~~-~~~gs~IivTtR~ 266 (863)
.+...+. .......... +.+. -+|||||++.. ..|.. +.. .+.. ...+.++|+||..
T Consensus 96 ~~~~~~~-------~~~~~~~~~~----~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 96 ELKHSLQ-------DQTMNEKLDY----IKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHC----------CCCHHHHHH----HHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhc-------cchHHHHHHH----hcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 4433221 1112222222 2222 39999999653 33322 111 1111 1235568888874
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.0008 Score=71.79 Aligned_cols=171 Identities=18% Similarity=0.173 Sum_probs=97.0
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
+++.|.+..+++|.+.+.- ...+-|-++|++|+|||.||+++++.. ...| +.|..+.-.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~sk 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQK 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSCS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhcc
Confidence 3457899988888776631 235678899999999999999999988 2222 34443322110
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc----------c------cccccCCCC--CC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV----------D------LTKVGVPFP--DP 254 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~------~~~~~~~l~--~~ 254 (863)
+...+...+...+...-...+.+|++|+++... + ...+...+. ..
T Consensus 222 -----------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 222 -----------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp -----------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred -----------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 011111111122222223578999999987421 0 011111111 12
Q ss_pred CCCcEEEEecCchhh-----hhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 255 ENKSKIVFTTRFLEI-----CGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 255 ~~gs~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
..+..||.||...+. .+.-.-+..+.++.-+.++-.++|+.+........+-+ ...|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 344556667765433 22113456788888888888899987765443222223 356777777753
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.62 E-value=0.00011 Score=88.59 Aligned_cols=154 Identities=16% Similarity=0.277 Sum_probs=84.3
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcC--CCCCC-C-EEEEEEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLG--APNDF-D-VVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~F-~-~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
+++|||+.++..+++.+......-+.++|.+|+||||+|+.+++.... +.... + .++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 568999999999999997766666789999999999999999987621 11111 1 334443322100
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhc--cCcEEEEEeccCCccc-------cc---cccCCCCCCCCCcEEEEecCchhh
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILS--KKKFLLLLDDIWERVD-------LT---KVGVPFPDPENKSKIVFTTRFLEI 269 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~-------~~---~~~~~l~~~~~gs~IivTtR~~~v 269 (863)
+.. ...........+.+.+. +++.+|++|+++.... ++ .+...+. ..+..+|.+|.....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHH
Confidence 000 01122222333333332 3678999999975320 11 1111111 123456665554332
Q ss_pred -----hhc-ccccceEeecCCChHHHHHHHHHHh
Q 048126 270 -----CGA-MKAHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 270 -----~~~-~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
... ..-...+.+++++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 111 1112358899999999999997544
No 209
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.61 E-value=0.00013 Score=74.97 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCccchhHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
..++|.+..++.+.+.+.. ...+-+.|+|++|+|||++|+.+++.. ...| +.+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPF---FSMGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCC---CCCCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEechHHHHH--
Confidence 5689999888877776541 123347799999999999999999987 2222 1111111000
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc-----------------ccccccCCCCC---
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV-----------------DLTKVGVPFPD--- 253 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------------~~~~~~~~l~~--- 253 (863)
.+... ........ +......++.+|++||++... ....+...+..
T Consensus 83 --------~~~~~----~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 83 --------MFVGL----GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp --------SCSSS----CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred --------hhcch----HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00000 01111111 222223467899999996431 11222222221
Q ss_pred CCCCcEEEEecCchhhhh--cc---cccceEeecCCChHHHHHHHHHHhcc
Q 048126 254 PENKSKIVFTTRFLEICG--AM---KAHEFLKVECLGPEDAWRLFRENLRR 299 (863)
Q Consensus 254 ~~~gs~IivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 299 (863)
......||.||....... .. .-...+.++..+.++-.+++...+..
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 112245666776543211 11 12345788888999988998877644
No 210
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.61 E-value=5.6e-05 Score=69.51 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=35.6
Q ss_pred CccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+||+...+.++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999998887742 233456799999999999999999875
No 211
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.59 E-value=2.9e-05 Score=74.48 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 048126 131 LESMFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLD 207 (863)
Q Consensus 131 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 207 (863)
....++.+.+++.. .....+.|+|+.|+||||||+.+++... ....+ .+++++ ..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~-~~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGI-RGYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCC-CCCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCC-eEEEEE------HHHHHHHHHHHhcCch
Confidence 34455555555543 2357899999999999999999998762 11122 123433 4444444444332111
Q ss_pred ccccCCChhHHHHHHHHHhccCcEEEEEeccCC--ccccc--cccCCCCC-CCCCcEEEEecCch
Q 048126 208 ESWKNGSLEDKASDILRILSKKKFLLLLDDIWE--RVDLT--KVGVPFPD-PENKSKIVFTTRFL 267 (863)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~--~~~~~l~~-~~~gs~IivTtR~~ 267 (863)
....... +. +.-+|||||++. .+.|. .+...+.. ...|..||+||...
T Consensus 91 -------~~~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 -------DTKFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -------CSHHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -------HHHHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1122222 22 456899999973 22332 11111111 12466788888643
No 212
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0005 Score=74.60 Aligned_cols=171 Identities=14% Similarity=0.161 Sum_probs=95.6
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
+++.|.+..+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 3457889888888776631 235788899999999999999999998 222 23444332211
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--------c--------cccccCCCC--CC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--------D--------LTKVGVPFP--DP 254 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~--------~~~~~~~l~--~~ 254 (863)
. +...+...+...+...-...+.+|++|+++... . +..+...+. ..
T Consensus 254 ------------k----~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ------------K----YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ------------S----SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ------------c----cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 0 011111111122222233578999999997421 0 011111111 12
Q ss_pred CCCcEEEEecCchhhhh-c-c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 255 ENKSKIVFTTRFLEICG-A-M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 255 ~~gs~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
..+..||.||....... . . .-+..+.++.-+.++-.++|+.++.......+.++ ..|++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 34556777776554321 1 1 12446788888888888888877654332222233 55667776643
No 213
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=0.00012 Score=74.10 Aligned_cols=79 Identities=29% Similarity=0.397 Sum_probs=49.0
Q ss_pred CCCccceEEccCCccccccc--hhhhcCCCccEEEccCCCccccCCccccccC--CCCeEEccCCCcc-ccc-------h
Q 048126 514 TCPHLLSLFLSDNSLKMIAG--DFFQFMPSLRVFNMSNNHLLWKLPSGISTLV--SLEHLDLSGTAIT-HLP-------I 581 (863)
Q Consensus 514 ~~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~--~L~~L~L~~~~l~-~lp-------~ 581 (863)
++++|++|+|++|.+..++. ..+..+++|++|+|++|.+. .+ ..+..+. +|++|+|++|.+. .+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 35566666666666655442 34567777777777777433 32 2344444 7788888887775 343 2
Q ss_pred hhhcCCCCCEEec
Q 048126 582 ELQKLVNLKCLNL 594 (863)
Q Consensus 582 ~~~~l~~L~~L~l 594 (863)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3677788888863
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.52 E-value=0.00054 Score=81.50 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=84.1
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC--CEEEEEEeCCccCHHHHHHHHHHHh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF--DVVIWVVVSKDLQLEKIQEKIGRRI 203 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l 203 (863)
.++|||+.+++.+...+......-+.++|++|+|||++|+.+++........+ ...-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 46899999999999999776666678999999999999999998852111000 0111111111
Q ss_pred CCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhh------hh-ccccc
Q 048126 204 GFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEI------CG-AMKAH 276 (863)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v------~~-~~~~~ 276 (863)
+.. +.......+...+......++.+|++| ........+...+. ....++|.||..... .. ...-.
T Consensus 245 g~~---~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf 317 (758)
T 3pxi_A 245 GTK---YRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRF 317 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred ccc---ccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhC
Confidence 000 011111222333333444678899999 22222222322222 234566666654431 00 01112
Q ss_pred ceEeecCCChHHHHHHHHHHhcc
Q 048126 277 EFLKVECLGPEDAWRLFRENLRR 299 (863)
Q Consensus 277 ~~~~l~~L~~~e~~~lf~~~~~~ 299 (863)
..+.++..+.++..+++......
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999876543
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0015 Score=70.61 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=95.6
Q ss_pred CccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 127 PTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
++.|.+..+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.|..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 457899888888776521 346788899999999999999999988 222 23444332110
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc----------------cccccCCCC--CCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD----------------LTKVGVPFP--DPE 255 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~~~l~--~~~ 255 (863)
. +...+...+...+...-...+++|++|+++.... ...+...+. ...
T Consensus 282 -----------k----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 282 -----------K----YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp -----------C----SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred -----------c----cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 0 0111111122222223345789999999874210 001111111 122
Q ss_pred CCcEEEEecCchhh-----hhcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 256 NKSKIVFTTRFLEI-----CGAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 256 ~gs~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
.+..||.||-.... .+.-.-+..+.++.-+.++-.++|+.++........-+ ...|++.+.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 34455666654433 11112345788888888888899987765443222223 356677787753
No 216
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.50 E-value=0.0013 Score=71.79 Aligned_cols=129 Identities=14% Similarity=0.187 Sum_probs=91.1
Q ss_pred ccccccceEEEEecccc---cccc--ccCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCcccccc
Q 048126 489 EIQNWRNVRRMSLMKNK---IENL--SETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTL 563 (863)
Q Consensus 489 ~~~~~~~lr~L~l~~~~---~~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l 563 (863)
.+.++.+|+.+.+..+. +..+ ..+..|.+|+.+.+..+ ++.++...|..+.+|+.+.+..+ ....-...+..+
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c 159 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC 159 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence 35677889999988664 3333 23577889998887755 67788888999999999999866 333334567788
Q ss_pred CCCCeEEccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeecc
Q 048126 564 VSLEHLDLSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKS 622 (863)
Q Consensus 564 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~ 622 (863)
.+|+.+.+..+ ++.+....-...+|+.+.+... +..+....+..+.+|........
T Consensus 160 ~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 160 YSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCS
T ss_pred cccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceeccccc
Confidence 99999998764 5666554334567888888653 34555555677778877765443
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.49 E-value=0.0018 Score=65.80 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=93.4
Q ss_pred CCccchhHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLG---E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
.+++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++.. ...| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 457899888877765542 1 123468899999999999999999887 2222 3333221100
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc----------------cccccCCCC--CCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD----------------LTKVGVPFP--DPE 255 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~~~l~--~~~ 255 (863)
. ............+.......+.++++|+++.... ...+...+. ...
T Consensus 84 --------~-------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------M-------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------S-------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------H-------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 0111122223333334445678999999843210 001110000 112
Q ss_pred CCcEEEEecCchhh-hhcc----cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCC-chhHHHH
Q 048126 256 NKSKIVFTTRFLEI-CGAM----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAG-LPLALIT 328 (863)
Q Consensus 256 ~gs~IivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~ 328 (863)
.+..||.||..... .... .-...+.++..+.++-.+++...+.......... ...++..+.| .+--+..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 34566777765432 1111 1234677788888888888877654322111111 3456667777 5544443
No 218
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0019 Score=69.06 Aligned_cols=168 Identities=17% Similarity=0.202 Sum_probs=93.1
Q ss_pred CccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 127 PTVGLESMFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
++.|.+..+++|.+.+. . ...+-|-++|++|+|||.||+++++.. ...| +.+..+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGCC--
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhhh--
Confidence 34688988888877653 1 235788999999999999999999998 2222 3333222110
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHH-HHhccCcEEEEEeccCCccc----------------cccccCCCC--CC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDIL-RILSKKKFLLLLDDIWERVD----------------LTKVGVPFP--DP 254 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~----------------~~~~~~~l~--~~ 254 (863)
. +.. ..+.....+. ..-+..+.+|++|+++.... ...+...+. ..
T Consensus 255 ------------k---~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 255 ------------K---YLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp ------------S---SSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred ------------c---cCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 011 1112222222 22235689999999874210 001111111 12
Q ss_pred CCCcEEEEecCchhhhh-cc----cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc
Q 048126 255 ENKSKIVFTTRFLEICG-AM----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 255 ~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 322 (863)
..+..||.||-..+... .+ .-+..+.++.-+.++-.++|+.++.......+.++ ..|++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 33455666776544321 11 12345778888888888888877654332222333 5566777665
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.48 E-value=0.00059 Score=75.91 Aligned_cols=177 Identities=12% Similarity=0.124 Sum_probs=99.9
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
..++|.+..+++|.+++.. ...+-|.|+|++|+|||++|+.+++.. ... .+.+.++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEch-----
Confidence 3478999999999887742 344578899999999999999998876 222 2344321
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc-------------cccccCCCC--CCCCC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD-------------LTKVGVPFP--DPENK 257 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~g 257 (863)
. +...+ ...........+.....+++.+|+||+++.... ...+...+. ....+
T Consensus 273 -~----l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -E----IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -H----HHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -H----hhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1 11111 011112223334444456788999999942110 011111111 12234
Q ss_pred cEEEEecCchhh-hhcc----cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc-hhHHHHH
Q 048126 258 SKIVFTTRFLEI-CGAM----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL-PLALITI 329 (863)
Q Consensus 258 s~IivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 329 (863)
.+||.||..... ...+ .-...+.+...+.++-.+++...+.......+..+ .++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 566666665432 1111 22346889999999999999988754332222233 4566666664 4444443
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.47 E-value=0.0007 Score=71.05 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCccchhHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE--------------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999998887743 234567899999999999999999887
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0019 Score=69.87 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=90.1
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
+++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++.. ... .+.|..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 3457899988888876631 245678899999999999999999988 222 23444332211
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--------c--------cccccCCCC--CC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--------D--------LTKVGVPFP--DP 254 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~--------~~~~~~~l~--~~ 254 (863)
. +...+...+...+...-...+.+|++|+++... . ...+...+. ..
T Consensus 245 ------------~----~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ------------K----YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ------------S----SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ------------c----ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0 011111111222222234568999999985310 0 111111111 12
Q ss_pred CCCcEEEEecCchhh-----hhcccccceEeecCCChHHH-HHHHHHHhcccccCCCCChHHHHHHHHHHhCCc
Q 048126 255 ENKSKIVFTTRFLEI-----CGAMKAHEFLKVECLGPEDA-WRLFRENLRRDVLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 255 ~~gs~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~-~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 322 (863)
..+..||.||...+. .+...-+..+.++.++..++ ..+|+..+.......+.+ ...|++.+.|.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 345566777765432 21112234567776755554 456665554332222223 35667777765
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.34 E-value=0.001 Score=73.42 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=94.9
Q ss_pred CCccchhHHHHHHHHHhc---CC---------CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLG---EE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
.+++|.+..++++.+.+. .. -.+-|.|+|++|+|||+||+.+++.. ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 457899988777766542 21 23458899999999999999999987 2222 33443322110
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc----------------cccccCCCC--CCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD----------------LTKVGVPFP--DPE 255 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~~~l~--~~~ 255 (863)
+ ...........+.......+.+|++|+++.... ...+...+. ...
T Consensus 89 ---------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ---------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ---------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ---------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 000111222233444456789999999965210 111111110 112
Q ss_pred CCcEEEEecCchhhhh-c-c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 256 NKSKIVFTTRFLEICG-A-M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 256 ~gs~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
.+..||.||...+... . . .-...+.++..+.++-.++++..+.........+ ...|++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 3566777776654421 1 1 1233678888888887888877665432121222 344777777766
No 223
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0013 Score=71.28 Aligned_cols=169 Identities=11% Similarity=0.166 Sum_probs=93.9
Q ss_pred CCccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
+++.|.+..+++|.+.+. . ...+-|-++|++|+|||.+|+++++.. ... .+.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh-
Confidence 345799999988887652 1 245788899999999999999999988 222 23444332110
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHH-HHHhccCcEEEEEeccCCc-------cc---------cccccCCCC--C
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDI-LRILSKKKFLLLLDDIWER-------VD---------LTKVGVPFP--D 253 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~-------~~---------~~~~~~~l~--~ 253 (863)
. +... .+.....+ ...-...+++|++|+++.. .. ...+...+. .
T Consensus 254 -------------~---~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 -------------M---YIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp -------------S---CSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred -------------c---ccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0 0111 11122222 2222346899999998631 00 011111111 1
Q ss_pred CCCCcEEEEecCchhhhh-cc----cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCc
Q 048126 254 PENKSKIVFTTRFLEICG-AM----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGL 322 (863)
Q Consensus 254 ~~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 322 (863)
...+..||.||....... .+ .-+..+.++.-+.++-.++|+.++.......+-+ ...|++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 223445666776544321 11 2345678888888888888877665432222223 35667777764
No 224
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.33 E-value=0.00069 Score=71.17 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=43.9
Q ss_pred CCccchhHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc
Q 048126 126 EPTVGLESMFDKVWRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD 189 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 189 (863)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.+.++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEY 86 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGGC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeecccc
Confidence 34789999988888877532 135799999999999999999998862 11123455665543
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.33 E-value=0.0014 Score=78.11 Aligned_cols=154 Identities=16% Similarity=0.258 Sum_probs=89.7
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCC---CCCCEEEE-EEeCCccCHHHHHHHHHH
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAP---NDFDVVIW-VVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~w-v~~s~~~~~~~~~~~i~~ 201 (863)
.++|||+.+++.+.+.|......-+.++|.+|+|||++|+.+++...... ......+| +.++.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 46799999999999999876667788999999999999999998762100 01222222 111110
Q ss_pred HhCCCCccccCCChhHHHHHHHHHhc-cCcEEEEEeccCCcc--------c---cccccCCCCCCCCCcEEEEecCchhh
Q 048126 202 RIGFLDESWKNGSLEDKASDILRILS-KKKFLLLLDDIWERV--------D---LTKVGVPFPDPENKSKIVFTTRFLEI 269 (863)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~--------~---~~~~~~~l~~~~~gs~IivTtR~~~v 269 (863)
+... . .....+.....+.+.+. .++.+|++||++... . ...+...+. ..+.++|.+|.....
T Consensus 254 -~~~~--~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 -LAGT--K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_dssp --CCC--C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHH
T ss_pred -hccc--c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHH
Confidence 0000 0 11223333333433333 357899999997531 1 111222222 234566766665442
Q ss_pred hhc-------ccccceEeecCCChHHHHHHHHHHh
Q 048126 270 CGA-------MKAHEFLKVECLGPEDAWRLFRENL 297 (863)
Q Consensus 270 ~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (863)
... ......+.++..+.++..+++...+
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111 1112357899999999998887654
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.23 E-value=0.0007 Score=69.27 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=39.7
Q ss_pred CCccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC
Q 048126 126 EPTVGLESMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK 188 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 188 (863)
+.+||.+..+.++.+.+.. .....|.|+|..|+|||++|+.+++...+ .. ...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~--~~-~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR--WQ-GPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT--TT-SCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc--cC-CCeEEEecCC
Confidence 4578999988888776642 23356779999999999999999987621 11 2245566554
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.16 E-value=0.0029 Score=70.18 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=36.1
Q ss_pred CCccchhHHHHHHHHHh---cCC--CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCL---GEE--QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899998887655444 333 23578899999999999999999887
No 228
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.05 E-value=0.0066 Score=62.85 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 229
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.01 E-value=0.00087 Score=69.94 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=37.1
Q ss_pred CccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|+...+.++.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 578999999988887753 334567799999999999999999865
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.97 E-value=0.00093 Score=79.49 Aligned_cols=60 Identities=22% Similarity=0.361 Sum_probs=43.2
Q ss_pred CCccchhHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC
Q 048126 126 EPTVGLESMFDKVWRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK 188 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 188 (863)
..++|.+..++.+.+.+... ....+.++|++|+|||++|+.+++... ..-...+.+.++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 45789999998888887521 123689999999999999999998862 2222345566544
No 231
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.96 E-value=0.00035 Score=64.29 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=29.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVS 187 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s 187 (863)
.-..++|+|..|+|||||++.++.... . ..+ .++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGK-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTC-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCC-cEEEEcHH
Confidence 456899999999999999999999873 2 222 25666544
No 232
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.89 E-value=0.0089 Score=64.58 Aligned_cols=121 Identities=9% Similarity=0.142 Sum_probs=66.9
Q ss_pred ccceEEEEeccccccccc--cCCCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEE
Q 048126 493 WRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570 (863)
Q Consensus 493 ~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 570 (863)
..+++.+.+.. .+..+. .+.+|.+|+.+.+..+ ++.+....|.++ .|..+.+..+ +..++.......+|+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCccccc
Confidence 34677776653 344442 3577888888888644 677777777777 4666655443 223333333334677777
Q ss_pred ccCCCccccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeec
Q 048126 571 LSGTAITHLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILK 621 (863)
Q Consensus 571 L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~ 621 (863)
+..+ +..+....-.-.+|..+.+.. .++.+....+..+.+|+.+.+..
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECT
T ss_pred CCCc-cccccccccccceeeeeeccc--eeeccccchhccccccccccccc
Confidence 7654 333433322223555555543 23444444455666666665543
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.83 E-value=0.0054 Score=69.46 Aligned_cols=45 Identities=33% Similarity=0.450 Sum_probs=35.0
Q ss_pred CccchhHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLG------EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|.+...+.+.+.+. ......+.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36788877777655442 1245689999999999999999999887
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.82 E-value=0.0056 Score=71.58 Aligned_cols=170 Identities=13% Similarity=0.109 Sum_probs=94.2
Q ss_pred CccchhHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 127 PTVGLESMFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
++.|.+..+++|.+.+. . ...+-|.++|++|+|||+||+.+++.. ..+ .+.|..+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 34688888887777652 1 235678999999999999999999887 222 24443221
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCcc--------c-----cccccCCCC--CCCCCc
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERV--------D-----LTKVGVPFP--DPENKS 258 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~-----~~~~~~~l~--~~~~gs 258 (863)
+ .. .. .......+...+....+..+.+|++|+++... . ...+...+. ....+.
T Consensus 274 -l----~s---k~----~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -I----MS---KL----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -H----HS---SC----TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -h----hc---cc----chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 1 10 00 11112223333334445678999999986421 0 011111110 111234
Q ss_pred EEEEecCchhh-hhcc----cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 259 KIVFTTRFLEI-CGAM----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 259 ~IivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
.||.||...+. -..+ .-...+.++.-+.++=.++|+..........+.+ ...|++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 45556654432 1111 1234678888888888888887765433222233 356777777764
No 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.81 E-value=0.015 Score=64.57 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=89.9
Q ss_pred CCccchhHHHHHHHHHhc---CC---------CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLG---EE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
.+++|.+..++++.+... .. -.+-+.|+|++|+||||||+.++... ... .+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCC---EEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEehhHHHH--
Confidence 568899887777665542 21 12348999999999999999999886 222 34444332110
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHHhcc----CcEEEEEeccCCccc----------------cccccCCCCC
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRILSK----KKFLLLLDDIWERVD----------------LTKVGVPFPD 253 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdv~~~~~----------------~~~~~~~l~~ 253 (863)
.........+...++. .+.++++|+++.... ...+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0011112223333332 357999999964210 0111111111
Q ss_pred --CCCCcEEEEecCchhhhhc--c---cccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 254 --PENKSKIVFTTRFLEICGA--M---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 254 --~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
...+..|+.||....+... . .-...+.++..+.++-.++++..+.......+.. ...|++.+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1233455666666554221 1 1234678888888888888876654322111112 344666666654
No 236
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.81 E-value=0.00084 Score=61.31 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=34.0
Q ss_pred CccchhHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|++..++++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468999988888887753 233457799999999999999998765
No 237
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.72 E-value=0.027 Score=57.53 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=80.3
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
.++.|.++.+++|.+.+.. .-.+-+.++|++|+||||||+.++... . . ..+++..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh
Confidence 4567888888887765421 112339999999999999999999876 2 1 2344443221110
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHh-ccCcEEEEEeccCCccc---------c----ccccCCCCC--CCC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRIL-SKKKFLLLLDDIWERVD---------L----TKVGVPFPD--PEN 256 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~---------~----~~~~~~l~~--~~~ 256 (863)
...........+.+.. ...+.++++|+++.... . ..+...+.. ...
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000011122222222 34578999999864210 0 001001111 112
Q ss_pred CcEEEEecCchhhhhc-----ccccceEeecCCChHHHHHHHHHHhc
Q 048126 257 KSKIVFTTRFLEICGA-----MKAHEFLKVECLGPEDAWRLFRENLR 298 (863)
Q Consensus 257 gs~IivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~ 298 (863)
..-++.+|....+... ..-+..+.++..+.++-.++|+....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3445566666554211 12345678888888888889887764
No 238
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.61 E-value=0.014 Score=60.00 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred CCccchhHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 126 EPTVGLESMFDKVWRCLG---E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
++++|.+..++++.+... . .-.+-+.|+|+.|+||||||+.++... .. ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecHH------
Confidence 457898877766655432 1 112238999999999999999999886 22 22333221
Q ss_pred HHHHHHHHHhCCCCccccCCChhHHHHHHHHH-hccCcEEEEEeccCCcc------------c----cccccCCCCCCC-
Q 048126 194 KIQEKIGRRIGFLDESWKNGSLEDKASDILRI-LSKKKFLLLLDDIWERV------------D----LTKVGVPFPDPE- 255 (863)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~------------~----~~~~~~~l~~~~- 255 (863)
.+ .... . .........+.+. -...+.++|+|+++... . ...+...+..+.
T Consensus 108 ~~----~~~~-~-------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DF----VEMF-V-------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HH----HHST-T-------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HH----HHHH-h-------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 0 0001112222222 22456899999995310 0 111111122111
Q ss_pred -CCcEEEEecCchhhh-----hcccccceEeecCCChHHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCch
Q 048126 256 -NKSKIVFTTRFLEIC-----GAMKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLP 323 (863)
Q Consensus 256 -~gs~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 323 (863)
....++.||....+. ....-...+.++..+.++-.+++...+.......... ...+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 223344555554432 1112345678888888888888877654322111122 334666666643
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.57 E-value=0.014 Score=58.98 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCccchhHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLG---E---------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++++|.+..+.++.+... . .-.+-+.|+|+.|+||||||+.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 457888876666554432 1 112338999999999999999999886
No 240
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.54 E-value=0.025 Score=59.64 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=61.9
Q ss_pred HHHHHhc-C--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc---c
Q 048126 137 KVWRCLG-E--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES---W 210 (863)
Q Consensus 137 ~l~~~L~-~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~ 210 (863)
.+-..|. . ..-+++.|+|++|+||||||.+++..... .=..++||+....++.. .+++++...+. .
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~ 119 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLIS 119 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEE
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhh
Confidence 3444454 2 24469999999999999999999887621 11347888877666544 45566654322 1
Q ss_pred cCCChhHHHHHHHHHhc-cCcEEEEEeccCCc
Q 048126 211 KNGSLEDKASDILRILS-KKKFLLLLDDIWER 241 (863)
Q Consensus 211 ~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~ 241 (863)
...+.++....+...++ .+.-++|+|.+...
T Consensus 120 ~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 120 QPDHGEQALEIVDELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCSEEEEECTTTC
T ss_pred hccCHHHHHHHHHHHhhhcCCCeEEehHhhhh
Confidence 23345555555555544 45568999998543
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.47 E-value=0.0015 Score=67.28 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=46.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEe--CCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVV--SKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
.+++.|+|++|+|||+||.+++... .. .++|+++ .+.. ... . .+.++....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~v-------------~~~----~-~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEPL-------------SGY----N-TDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCSS-------------TTC----B-CCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhhh-------------hhh----h-cCHHHHHHHHHH
Confidence 4577899999999999999998752 11 2456666 2221 110 1 344556666777
Q ss_pred HhccCcEEEEEeccCC
Q 048126 225 ILSKKKFLLLLDDIWE 240 (863)
Q Consensus 225 ~l~~kr~LlVlDdv~~ 240 (863)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 777767 999999954
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.46 E-value=0.012 Score=70.03 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=84.1
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
.+++|.+..+++|.+++.. .....|.|+|++|+||||||+.++... ...| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 3468999888888887742 234579999999999999999999876 2222 3333211
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCCccc----------------cccccCCCCCCCC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWERVD----------------LTKVGVPFPDPEN 256 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 256 (863)
+. +.. ...........+.......+.++++|++..... +..+...+. ...
T Consensus 274 ------l~---~~~----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~ 339 (806)
T 1ypw_A 274 ------IM---SKL----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (806)
T ss_dssp ------HS---SSS----TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTS
T ss_pred ------hh---hhh----hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccc
Confidence 10 000 011111222333444445788999999953210 111111111 112
Q ss_pred CcEEEEecCchh-hhhcc----cccceEeecCCChHHHHHHHHHHhccc
Q 048126 257 KSKIVFTTRFLE-ICGAM----KAHEFLKVECLGPEDAWRLFRENLRRD 300 (863)
Q Consensus 257 gs~IivTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~ 300 (863)
+..+|.||.... +...+ .-...+.+...+.++-.+++...+...
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 345555655432 21111 122456788888899889988766543
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.39 E-value=0.0075 Score=59.41 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc-------ccCCCh---
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES-------WKNGSL--- 215 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~--- 215 (863)
.-.++.|+|.+|+||||||..++. . . -..++|++....++...+.. +.+.++...+. ......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 446999999999999999999987 3 1 13688888776555555443 33333321100 011122
Q ss_pred hHHHHHHHHHhccCcEEEEEeccCC
Q 048126 216 EDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 216 ~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
.+....++..+..+.-+||+|.+..
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 2234444444444567899998854
No 244
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.28 E-value=0.011 Score=59.08 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCC----CCCEEEEEEeCCccCHHHHHHHHHHHhCCCCc----c---ccCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPN----DFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDE----S---WKNGS 214 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 214 (863)
.-.++.|+|.+|+|||||+..++... .... .-..++|+.....++...+. .+++.++...+ . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 44699999999999999999998864 1111 13578899877655554443 34455554321 0 01122
Q ss_pred hhH---HHHHHHHHhc-cCcEEEEEeccCC
Q 048126 215 LED---KASDILRILS-KKKFLLLLDDIWE 240 (863)
Q Consensus 215 ~~~---~~~~l~~~l~-~kr~LlVlDdv~~ 240 (863)
..+ ....+.+.+. .+.-+||+|++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 222 2233444444 3667899998854
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.23 E-value=0.038 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 443
No 246
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.12 E-value=0.02 Score=60.08 Aligned_cols=92 Identities=15% Similarity=0.289 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCC----CCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc-------ccCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPN----DFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES-------WKNGS 214 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 214 (863)
.-.++.|+|.+|+||||||.+++.... ... .-..++|++....++...+. ++++.++...+. ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~-~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ-LPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh-cccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCC
Confidence 456999999999999999999987751 111 02478999988877766655 345666553210 01122
Q ss_pred hh---HHHHHHHHHhc--cCcEEEEEeccC
Q 048126 215 LE---DKASDILRILS--KKKFLLLLDDIW 239 (863)
Q Consensus 215 ~~---~~~~~l~~~l~--~kr~LlVlDdv~ 239 (863)
.+ +....+...++ .+.-+||+|.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 22 23344555554 345688888874
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.03 E-value=0.0045 Score=64.55 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 132 ESMFDKVWRCLGEE---QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 132 ~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...++.+.+++... ....+.|+|+.|+|||+||+.+++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33445555566431 24688899999999999999999976
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.03 E-value=0.026 Score=59.74 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=57.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCC----CCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc-------ccCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPN----DFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES-------WKNGS 214 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 214 (863)
.-.++.|+|.+|+||||||.+++... .... .-..++|++....++...+. .++..++..... ....+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 45699999999999999999998874 1111 22478999988877766654 344555543210 01112
Q ss_pred hh---HHHHHHHHHhc---cCcEEEEEeccCC
Q 048126 215 LE---DKASDILRILS---KKKFLLLLDDIWE 240 (863)
Q Consensus 215 ~~---~~~~~l~~~l~---~kr~LlVlDdv~~ 240 (863)
.+ +....+.+.++ .+.-+||+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 22 23334444444 3456888888743
No 249
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.03 E-value=0.015 Score=61.58 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=55.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---cCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW---KNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 222 (863)
.-+++.|.|.+|+||||||.+++..... .=..++|++....++.. .+..++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4569999999999999999999877621 11358899987776643 245555443211 122344444444
Q ss_pred HHHhc-cCcEEEEEeccCC
Q 048126 223 LRILS-KKKFLLLLDDIWE 240 (863)
Q Consensus 223 ~~~l~-~kr~LlVlDdv~~ 240 (863)
....+ .+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 44333 3455899999853
No 250
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.02 E-value=0.0026 Score=62.44 Aligned_cols=113 Identities=15% Similarity=-0.015 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
.-.++.|+|..|+||||++..++.+.. .... .++.+....+. + -..+++..++...+........+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE--YADV-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTC-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH--hcCC-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 346888999999999999999988872 1223 34444433322 1 2224455555443222223344455555554
Q ss_pred hccCcE-EEEEeccCCc--cccccccCCCCCCCCCcEEEEecCch
Q 048126 226 LSKKKF-LLLLDDIWER--VDLTKVGVPFPDPENKSKIVFTTRFL 267 (863)
Q Consensus 226 l~~kr~-LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~ 267 (863)
+.+.++ +||+|.+... ...+.+.. +.+ .|..||+|.+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 444444 9999999642 12222211 111 267788888854
No 251
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.01 E-value=0.046 Score=57.94 Aligned_cols=165 Identities=11% Similarity=-0.059 Sum_probs=98.7
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhH
Q 048126 138 VWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLED 217 (863)
Q Consensus 138 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 217 (863)
+.+.+...-.++..++|..|.||++.|+.+..... ...|+....+.+....++.++...+-.
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQA---------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHH----------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcC----------------
Confidence 33444434457889999999999999999988652 224543222233333444443332210
Q ss_pred HHHHHHHHhccCcEEEEEeccCC-c--cccccccCCCCCCCCCcEEEEecCc-------hhhhhc-ccccceEeecCCCh
Q 048126 218 KASDILRILSKKKFLLLLDDIWE-R--VDLTKVGVPFPDPENKSKIVFTTRF-------LEICGA-MKAHEFLKVECLGP 286 (863)
Q Consensus 218 ~~~~l~~~l~~kr~LlVlDdv~~-~--~~~~~~~~~l~~~~~gs~IivTtR~-------~~v~~~-~~~~~~~~l~~L~~ 286 (863)
.-+-+++-++|+|+++. . ..+..+...+.....++.+|++|.. ..+... ......++..+++.
T Consensus 71 ------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~ 144 (343)
T 1jr3_D 71 ------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ 144 (343)
T ss_dssp ------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred ------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCH
Confidence 12235567888999865 2 3444454444444457777766532 123222 22335788999999
Q ss_pred HHHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 048126 287 EDAWRLFRENLRRDVLDNHPDIPELARSVAKEYAGLPLALITI 329 (863)
Q Consensus 287 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 329 (863)
++-...+.+.+......- -.+.+..+++.++|.+.++...
T Consensus 145 ~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLEL---DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp THHHHHHHHHHHHTTCEE---CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhchHHHHHHHH
Confidence 999988887765432111 1456788999999988777653
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.95 E-value=0.0096 Score=70.83 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=37.1
Q ss_pred CCccchhHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE---------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999888877642 122478899999999999999999887
No 253
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.95 E-value=0.02 Score=58.53 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=56.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---cCCChhHH-HHHHHH
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW---KNGSLEDK-ASDILR 224 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~~ 224 (863)
++-|+|.+|+||||||.+++....+ ...=..++||+....++.. .+++++...+.. ...+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 7899999999999999998877621 1012468999987777653 367777654321 22344444 332222
Q ss_pred H--h-ccCcEEEEEeccCCc
Q 048126 225 I--L-SKKKFLLLLDDIWER 241 (863)
Q Consensus 225 ~--l-~~kr~LlVlDdv~~~ 241 (863)
. + +++.-++|+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 2 2 346789999999653
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.93 E-value=0.021 Score=60.70 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=57.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc---ccCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES---WKNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (863)
.-.++.|+|.+|+||||||.+++..... .-..++|++....++.. .+..++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 4468999999999999999999877621 12368899988766643 24555554321 1223455666666
Q ss_pred HHHhcc-CcEEEEEeccCC
Q 048126 223 LRILSK-KKFLLLLDDIWE 240 (863)
Q Consensus 223 ~~~l~~-kr~LlVlDdv~~ 240 (863)
....+. ..-+||+|.+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 555543 455899999853
No 255
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.85 E-value=0.0096 Score=71.61 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=36.6
Q ss_pred CccchhHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888888777421 12578899999999999999999876
No 256
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.81 E-value=0.024 Score=60.00 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=56.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc---ccCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES---WKNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (863)
.-+++.|+|.+|+||||||.+++..... .=..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4579999999999999999999876521 12357899887766543 25556544321 1223445555555
Q ss_pred HHHhc-cCcEEEEEeccCC
Q 048126 223 LRILS-KKKFLLLLDDIWE 240 (863)
Q Consensus 223 ~~~l~-~kr~LlVlDdv~~ 240 (863)
....+ .+.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 44443 3466999999854
No 257
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.81 E-value=0.047 Score=59.15 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 258
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.79 E-value=0.0049 Score=58.59 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC---ccCHHHHHHHHHHHhCCCCcccc--CC-------C
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK---DLQLEKIQEKIGRRIGFLDESWK--NG-------S 214 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~~~~~~~~--~~-------~ 214 (863)
...|-|++..|.||||.|--.+-+.. ...+ .+.++...+ ..+...++..+.-.+......+. .. .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 35667777777999999999988862 2334 344554333 22333444333100000000111 00 1
Q ss_pred hhHHHHHHHHHhccCcE-EEEEeccCCc-----cccccccCCCCCCCCCcEEEEecCch
Q 048126 215 LEDKASDILRILSKKKF-LLLLDDIWER-----VDLTKVGVPFPDPENKSKIVFTTRFL 267 (863)
Q Consensus 215 ~~~~~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~ 267 (863)
........++.+.+.+| |||||++-.. ...+++...+........||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11223344555555554 9999998432 22233322232333467799999985
No 259
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.74 E-value=0.024 Score=61.19 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCCCccceEEccCCccccccchhhhcCCCccEEEccCCCccccCCccccccCCCCeEEccCCCccccch-hhhcCCCCCE
Q 048126 513 PTCPHLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSGTAITHLPI-ELQKLVNLKC 591 (863)
Q Consensus 513 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~ 591 (863)
..|..|+.+.+..+ ++.+....|.++..|+.+.+..+ ....-...+.++.+|+.+.+.++.++.++. .+.++.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 45555555555443 44555555555666666655443 221122344555566666665555555543 3555566666
Q ss_pred EecCCccccCCCcHHHhhcCCCCcEEEe
Q 048126 592 LNLEYMYNLNQFPRLVMSAFSKLQVLRI 619 (863)
Q Consensus 592 L~l~~~~~l~~lp~~~~~~L~~L~~L~l 619 (863)
+.+.. .++.++...+.++++|+.+.+
T Consensus 315 i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 315 VTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred EEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 65543 244455444555555555544
No 260
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.54 E-value=0.013 Score=56.92 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 130 GLESMFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 130 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|++.++++.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677778777754 345799999999999999999998765
No 261
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.45 E-value=0.039 Score=54.69 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=31.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEK 198 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 198 (863)
-.+++|+|..|+|||||++.++..... .. ..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~-~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR--DG-DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH--HT-CCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH--CC-CeEEEEEccc--CHHHHHHH
Confidence 468999999999999999999866521 11 2466665433 34444433
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.40 E-value=0.044 Score=56.48 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=47.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
...+++++|.+|+||||++..++.... ..... .+.++.... .....+.+....+..+.... ...+..++...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM-LEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH-HTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 457999999999999999999987762 11222 345555432 22233344444444444321 1122333333333
Q ss_pred HhccCcEEEEEec
Q 048126 225 ILSKKKFLLLLDD 237 (863)
Q Consensus 225 ~l~~kr~LlVlDd 237 (863)
.+ .+.=++|+|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 33 3445788884
No 263
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.38 E-value=0.03 Score=58.85 Aligned_cols=92 Identities=15% Similarity=0.272 Sum_probs=56.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCC------------CCC--CEEEEEEeCCccCHHHHHHHHHHHhCCCCcc--
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAP------------NDF--DVVIWVVVSKDLQLEKIQEKIGRRIGFLDES-- 209 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-- 209 (863)
.-.++.|+|.+|+|||+||.+++... ... ... ..++|++....++..++.. +++.++...+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 45699999999999999999998763 111 111 4789999888777776653 45566553210
Q ss_pred -----ccCCChhH---HHHHHHHHhcc--CcEEEEEeccC
Q 048126 210 -----WKNGSLED---KASDILRILSK--KKFLLLLDDIW 239 (863)
Q Consensus 210 -----~~~~~~~~---~~~~l~~~l~~--kr~LlVlDdv~ 239 (863)
....+.++ ....+.+.++. +.-+||+|.+.
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 01122222 33344444443 34578888874
No 264
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.22 E-value=0.096 Score=57.01 Aligned_cols=91 Identities=21% Similarity=0.185 Sum_probs=47.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCccc-cCCChhHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFLDESW-KNGSLEDKASDIL 223 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 223 (863)
..++|.++|.+|+||||++..++.... .+... .++.|++.. .......+.......++..-.. ...+..+......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~-~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR-EKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH-HTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 467999999999999999999998772 12133 345555432 2233333333444444321100 1123334433333
Q ss_pred HHhccCcE-EEEEecc
Q 048126 224 RILSKKKF-LLLLDDI 238 (863)
Q Consensus 224 ~~l~~kr~-LlVlDdv 238 (863)
+.++.+.| ++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 33432233 6666764
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.14 E-value=0.017 Score=56.34 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 133 SMFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 133 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.+++|.+.+.. ....+|+|+|+.|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666653 356799999999999999999998876
No 266
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.10 E-value=0.079 Score=55.67 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc
Q 048126 137 KVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL 190 (863)
Q Consensus 137 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~ 190 (863)
++++.+.. ..-..++|+|..|+|||||++.+.+........+. ++++-+++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 34455543 34568999999999999999998876521112343 4467777654
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.10 E-value=0.093 Score=56.39 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=53.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCC---CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCcc-------ccCCCh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGA---PNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDES-------WKNGSL 215 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 215 (863)
.-.++.|+|..|+|||||+..++-..... ...-..++|++....+....+ +.+++.++...+. ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 45699999999999999999876433110 012346889987766655544 3466666654210 011222
Q ss_pred hH---HHHHHHHHhc-cCcEEEEEeccC
Q 048126 216 ED---KASDILRILS-KKKFLLLLDDIW 239 (863)
Q Consensus 216 ~~---~~~~l~~~l~-~kr~LlVlDdv~ 239 (863)
.. ....+.+.+. .+.-+||+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 22 2223333333 356788889874
No 268
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.95 E-value=0.079 Score=57.41 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=63.1
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCC------C--
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFL------D-- 207 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~------~-- 207 (863)
+++.+.. .+-..++|+|..|+|||+|+.++.+... +.+-+.++++-+.+... +.++.+.+.+.-... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 4555543 3446889999999999999999998752 33456788888887754 566777776543221 0
Q ss_pred ---ccccCCChh------HHHHHHHHHh---ccCcEEEEEeccCC
Q 048126 208 ---ESWKNGSLE------DKASDILRIL---SKKKFLLLLDDIWE 240 (863)
Q Consensus 208 ---~~~~~~~~~------~~~~~l~~~l---~~kr~LlVlDdv~~ 240 (863)
.+ ...+.. ...-.+.+++ +++.+||++||+..
T Consensus 221 vV~~t-~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 221 LVYGQ-MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEC-TTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00 111111 1122233444 46899999999854
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.93 E-value=0.014 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 270
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.89 E-value=0.0021 Score=61.40 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997777665
No 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.86 E-value=0.13 Score=53.63 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=36.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCC
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGF 205 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 205 (863)
....+++|+|+.|+||||+++.++.... . ... .+.++...- .....+.+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~-~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-N-HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-H-TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-h-cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 3567999999999999999999988762 1 222 244443321 12334445555666664
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.85 E-value=0.11 Score=53.41 Aligned_cols=89 Identities=19% Similarity=0.127 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCccc-cCCChhHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD-LQLEKIQEKIGRRIGFLDESW-KNGSLEDKASDILR 224 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 224 (863)
..+++++|.+|+||||++..++..... .. ..+.++..... ......++...+..+...-.. ...+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g-~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KG-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TT-CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CC-CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 569999999999999999999887621 12 23555554322 222333444555555432110 12234444444444
Q ss_pred HhccCcE-EEEEecc
Q 048126 225 ILSKKKF-LLLLDDI 238 (863)
Q Consensus 225 ~l~~kr~-LlVlDdv 238 (863)
.++.++| ++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4442333 7778865
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.85 E-value=0.015 Score=55.01 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999886
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.74 E-value=0.096 Score=54.08 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH--HHHHHHHHHHhCCCCcc-ccCCChhHH-HHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL--EKIQEKIGRRIGFLDES-WKNGSLEDK-ASD 221 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 221 (863)
...+|+|+|.+|+||||++..++.... . .. ..+.++... .+.. .+.+...++..+...-. ....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~-~g-~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D-EG-KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-h-cC-CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 457999999999999999999998772 1 11 234555443 2222 22234455555543211 011122222 234
Q ss_pred HHHHhccCcEEEEEeccC
Q 048126 222 ILRILSKKKFLLLLDDIW 239 (863)
Q Consensus 222 l~~~l~~kr~LlVlDdv~ 239 (863)
+...+....-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455555588888663
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.72 E-value=0.14 Score=55.33 Aligned_cols=58 Identities=26% Similarity=0.202 Sum_probs=35.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK-DLQLEKIQEKIGRRIGFL 206 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 206 (863)
...+|.++|.+|+||||++..++.... .... .++.+.... .....+.+.......+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGY-KVGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH--HTTC-CEEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCC-eEEEEecCccchhHHHHHHHHHHhcCCc
Confidence 467999999999999999999988773 1223 344444332 112233444455555543
No 276
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.70 E-value=0.17 Score=54.64 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=47.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH--HHHHHHHHHhCCCCccc-cCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE--KIQEKIGRRIGFLDESW-KNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 222 (863)
...+|+|+|.+|+||||++..++.... . ... .+..+.. +.+... ..+.......+...-.. ...+..++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~-~-~g~-~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-G-KGR-RPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-T-TTC-CEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-cCC-eEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHH
Confidence 346899999999999999999998872 2 222 3444544 223322 22344455555432110 112333443333
Q ss_pred HHHhccCcE-EEEEecc
Q 048126 223 LRILSKKKF-LLLLDDI 238 (863)
Q Consensus 223 ~~~l~~kr~-LlVlDdv 238 (863)
.+.++.+.| ++|+|-.
T Consensus 173 l~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 173 EEKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHHCCCCEEEEcCC
Confidence 334432333 6666754
No 277
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.63 E-value=0.034 Score=58.09 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=33.0
Q ss_pred cchhHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 129 VGLESMFDKVWRCLG----EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 129 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
|+.+...+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455666666666663 3456679999999999999999998765
No 278
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.62 E-value=0.061 Score=56.94 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC----CEEEEEEeCCccCHHHHHHHHHHHhCCCCcc------c-cCCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDF----DVVIWVVVSKDLQLEKIQEKIGRRIGFLDES------W-KNGS 214 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~-~~~~ 214 (863)
.-.++.|+|..|+|||||+..++... ...... ..++||+....+....+ ..+++..+..... . ...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 45799999999999999999998775 111111 25689887655443333 3455554432210 0 0111
Q ss_pred ---hhHHHHHHHHHhc------cCcEEEEEeccCC
Q 048126 215 ---LEDKASDILRILS------KKKFLLLLDDIWE 240 (863)
Q Consensus 215 ---~~~~~~~l~~~l~------~kr~LlVlDdv~~ 240 (863)
..+....+...+. .+.-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1223344444444 3567889998854
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.61 E-value=0.02 Score=55.34 Aligned_cols=26 Identities=42% Similarity=0.367 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|.|+|+.|+||||+|+.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999886
No 280
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.59 E-value=0.029 Score=55.35 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 133 SMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 133 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334555555555567899999999999999999998875
No 281
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.55 E-value=0.062 Score=51.22 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=11.7
Q ss_pred HHHHHcCCccCceEEEEEcCh
Q 048126 632 LVEELMGMKHLMALTITLKSW 652 (863)
Q Consensus 632 ~~~~l~~L~~L~~L~l~~~~~ 652 (863)
....|..-+.|..|++.++..
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 334455556666777665543
No 282
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.53 E-value=0.022 Score=60.18 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=37.6
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|++..++.+...+..+ .-+.++|++|+|||++|+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 45899999999988887654 357799999999999999999876
No 283
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.46 E-value=0.12 Score=53.74 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=38.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
.-.++.|.|.+|+||||+|..++..... .. ..++|++.- .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD--ND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT--TT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 4468999999999999999999877622 22 578888755 4566666666554
No 284
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.43 E-value=0.024 Score=54.03 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|.|.|+.|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999886
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.42 E-value=0.022 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+.|.|+|+.|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999886
No 286
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.41 E-value=0.11 Score=56.42 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=64.3
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCC-------Cc
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFL-------DE 208 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~ 208 (863)
+++.|.. .+-..++|.|..|+|||+|+.++.+... +.+-+.++|+-+.+... ..++.+.+.+.-... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 4455543 3445789999999999999999998752 34457888998888764 567777776542221 00
Q ss_pred c--c--cCCC------hhHHHHHHHHHhc---cCcEEEEEeccCC
Q 048126 209 S--W--KNGS------LEDKASDILRILS---KKKFLLLLDDIWE 240 (863)
Q Consensus 209 ~--~--~~~~------~~~~~~~l~~~l~---~kr~LlVlDdv~~ 240 (863)
. . ...+ .....-.+.++++ ++.+||++||+..
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 0 0111 1122334455665 4789999999854
No 287
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.39 E-value=0.071 Score=57.94 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=52.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCC-----ccccCCChhHH---
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFLD-----ESWKNGSLEDK--- 218 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-----~~~~~~~~~~~--- 218 (863)
..++|+|..|+|||||++.+..... ...-+.++++-+++..+ ..++.+.+...-.... ...........
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 4688999999999999999987752 11224567777777653 4455555543210000 00011111111
Q ss_pred --HHHHHHHh---ccCcEEEEEeccCC
Q 048126 219 --ASDILRIL---SKKKFLLLLDDIWE 240 (863)
Q Consensus 219 --~~~l~~~l---~~kr~LlVlDdv~~ 240 (863)
.-.+.+++ +++.+||++||+..
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11233333 57899999999854
No 288
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.30 E-value=0.1 Score=52.06 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=29.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK 188 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 188 (863)
.-.++.|.|.+|+||||||.+++..... .=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 3468999999999999999988766521 123577877554
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.29 E-value=0.02 Score=53.84 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.29 E-value=0.024 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINN 169 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~ 169 (863)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.29 E-value=0.024 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998865
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.28 E-value=0.025 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+|+|+|+.|+|||||++.++...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998754
No 293
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.22 E-value=0.041 Score=58.83 Aligned_cols=44 Identities=25% Similarity=0.173 Sum_probs=36.1
Q ss_pred ccchhHHHHHHHHHhc-------------C--CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 128 TVGLESMFDKVWRCLG-------------E--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 128 ~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5899998888888772 1 134568899999999999999999886
No 294
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.21 E-value=0.03 Score=55.07 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 130 GLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.+...+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455556655555577899999999999999999998876
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.15 E-value=0.03 Score=54.09 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|+|+|+.|+||||+|+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.12 E-value=0.024 Score=54.96 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.09 E-value=0.028 Score=53.86 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.08 E-value=0.031 Score=54.06 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|+|+|+.|+||||+++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998875
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.00 E-value=0.03 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 300
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.00 E-value=0.033 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 301
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.98 E-value=0.045 Score=56.22 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998776
No 302
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.97 E-value=0.052 Score=58.40 Aligned_cols=45 Identities=24% Similarity=0.193 Sum_probs=35.2
Q ss_pred CccchhHHHHHHHHHhc------------------------------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLG------------------------------EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|.+..++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46888888888777662 0123468899999999999999999876
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.95 E-value=0.029 Score=53.18 Aligned_cols=25 Identities=44% Similarity=0.450 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|.|+|+.|+||||+|+.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 304
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.90 E-value=0.4 Score=50.00 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
.-.++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 3468999999999999999999888622 2235677665 44566666666544
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.88 E-value=0.022 Score=54.02 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.|.|+|+.|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998876
No 306
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.83 E-value=0.04 Score=61.14 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=37.0
Q ss_pred CccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 127 PTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+||.+..++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 4799999999888877654 367799999999999999999876
No 307
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.82 E-value=0.029 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..|.|.|+.|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999887
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.80 E-value=0.035 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 309
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.79 E-value=0.095 Score=46.47 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=19.9
Q ss_pred ccceEEccCCccccccchhhhcCCCccEEEccCC
Q 048126 517 HLLSLFLSDNSLKMIAGDFFQFMPSLRVFNMSNN 550 (863)
Q Consensus 517 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 550 (863)
+|+.|+|++|.++.++...|..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555666666555555555555555555555555
No 310
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.78 E-value=0.035 Score=53.75 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 311
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.76 E-value=0.037 Score=55.55 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|+.|+||||+++.++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999776
No 312
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.74 E-value=0.038 Score=53.06 Aligned_cols=26 Identities=38% Similarity=0.378 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|.|+.|+||||+|+.++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999999876
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.74 E-value=0.034 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999886
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.73 E-value=0.037 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|+.|+||||+|+.++...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 315
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.73 E-value=0.039 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999876
No 316
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.72 E-value=0.07 Score=47.31 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=24.7
Q ss_pred eEEccCCCcc--ccchhhhcCCCCCEEecCCccccCCCcHHHhhcCCCCcEEEeeccc
Q 048126 568 HLDLSGTAIT--HLPIELQKLVNLKCLNLEYMYNLNQFPRLVMSAFSKLQVLRILKSN 623 (863)
Q Consensus 568 ~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~ 623 (863)
.++.+++.++ .+|..+. .+|++|+|++| .++.+|.+.+..+++|+.|++.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 3444444444 4443221 24555555554 3445554444555555555555443
No 317
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.71 E-value=0.37 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|+|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998776
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.70 E-value=0.04 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
....|+|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999987
No 319
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.70 E-value=0.035 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 320
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.68 E-value=0.027 Score=59.95 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=34.7
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.+...+......-+.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4578998876665544433333348899999999999999999876
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.68 E-value=0.033 Score=54.07 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998876
No 322
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.65 E-value=0.14 Score=48.83 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=19.6
Q ss_pred cCCCCcEEEeeccccccCchhhHHHHHcCCccCceEEEE
Q 048126 610 AFSKLQVLRILKSNVLFGGHQFLVEELMGMKHLMALTIT 648 (863)
Q Consensus 610 ~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 648 (863)
.-+.|++|++..|.+...+.......|..-+.|+.|+++
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECC
Confidence 334555555555554433223344445554556666664
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.62 E-value=0.038 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999863
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.59 E-value=0.04 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.58 E-value=0.043 Score=53.09 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999875
No 326
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.54 E-value=0.032 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 327
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.52 E-value=0.034 Score=53.06 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 328
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.52 E-value=0.041 Score=51.95 Aligned_cols=23 Identities=52% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 329
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.50 E-value=0.044 Score=53.41 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+.++|.|.|++|+||||.|+.+++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999987
No 330
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.50 E-value=0.045 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999864
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.49 E-value=0.04 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINN 169 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~ 169 (863)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 332
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.47 E-value=0.059 Score=51.39 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=28.1
Q ss_pred HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 135 FDKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 135 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+..+..++.. +..+.+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555543 233579999999999999999999887
No 333
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.46 E-value=0.041 Score=57.24 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK 188 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 188 (863)
++.+||+|.|-|||||||.|..++--..+ ..+ .+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~--~Gk-kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGK-RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTC-CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH--CCC-eEEEEecCC
Confidence 46789999999999999999988777632 222 366666653
No 334
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.43 E-value=0.043 Score=52.82 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999886
No 335
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.43 E-value=0.042 Score=54.26 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.40 E-value=0.038 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 337
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.36 E-value=0.049 Score=52.77 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.35 E-value=0.046 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..|++.|+.|+||||+|+.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 339
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.34 E-value=0.047 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998875
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.29 E-value=0.18 Score=64.53 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=56.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---cCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW---KNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 222 (863)
..+.|.|+|++|+|||+||.+++.... +.. ..++|+++...++... ++.++...+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G-~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REG-KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTT-CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcC-CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 567999999999999999999988762 122 3578888877766555 44555332111 122334445555
Q ss_pred HHHhc-cCcEEEEEeccC
Q 048126 223 LRILS-KKKFLLLLDDIW 239 (863)
Q Consensus 223 ~~~l~-~kr~LlVlDdv~ 239 (863)
.+..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54443 466799999995
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.26 E-value=0.049 Score=55.15 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 342
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.24 E-value=0.071 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998875
No 343
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.23 E-value=0.051 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 344
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.23 E-value=0.034 Score=52.74 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 345
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.23 E-value=0.05 Score=52.85 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998754
No 346
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.18 E-value=0.038 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKIN 168 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~ 168 (863)
.-.+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 347
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.17 E-value=0.046 Score=53.06 Aligned_cols=22 Identities=41% Similarity=0.523 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINN 169 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~ 169 (863)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.17 E-value=0.051 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 349
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.16 E-value=0.39 Score=56.19 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=56.4
Q ss_pred CCccchhHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCH
Q 048126 126 EPTVGLESMFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQL 192 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 192 (863)
..+.|.++.+++|.+.+.- ...+-|.++|++|.|||.+|+++++.. .. -++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEecc----
Confidence 3456888888888776531 123457899999999999999999987 22 2333321
Q ss_pred HHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhccCcEEEEEeccCC
Q 048126 193 EKIQEKIGRRIGFLDESWKNGSLEDKASDILRILSKKKFLLLLDDIWE 240 (863)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 240 (863)
.++ +.. +...+...+...+...-+..+.+|++|+++.
T Consensus 545 ~~l----~s~-------~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PEL----LTM-------WFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HHH----HTT-------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred chh----hcc-------ccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 121 111 1222333333333333345789999999864
No 350
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.16 E-value=0.041 Score=53.06 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 351
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.16 E-value=0.055 Score=51.75 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998775
No 352
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.14 E-value=0.39 Score=50.40 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc
Q 048126 137 KVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL 190 (863)
Q Consensus 137 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~ 190 (863)
++++.+.. .+-..++|+|..|+|||+|+.++++........+. ++++-+++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 45666654 34468899999999999999999887521112333 3567666553
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.13 E-value=0.051 Score=52.50 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|.|.|+.|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.12 E-value=0.057 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999999876
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.11 E-value=0.052 Score=51.91 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 356
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.11 E-value=0.062 Score=58.30 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCccchhHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGE--------------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578988888888766621 124568899999999999999999887
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.06 E-value=0.054 Score=51.85 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.06 E-value=0.089 Score=52.56 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|+|.|+.|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999999876
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.02 E-value=0.055 Score=51.72 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999874
No 360
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.96 E-value=0.28 Score=50.44 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=48.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCccc-cCCChhHHHH-HH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFLDESW-KNGSLEDKAS-DI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~-~l 222 (863)
...+++|+|.+|+||||++..++.... . .. ..+.++....... ....+....+..+...-.. ...+..++.. .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~-~-~~-~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-G-KG-RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-H-TT-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-cC-CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 346999999999999999999988762 1 11 2345554432211 1122334455555432110 1223334433 33
Q ss_pred HHHhccCcEEEEEecc
Q 048126 223 LRILSKKKFLLLLDDI 238 (863)
Q Consensus 223 ~~~l~~kr~LlVlDdv 238 (863)
........=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333344557888876
No 361
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.90 E-value=0.062 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.90 E-value=0.057 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...|.|.|+.|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 363
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.83 E-value=0.2 Score=52.12 Aligned_cols=26 Identities=42% Similarity=0.612 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 364
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.83 E-value=0.064 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 365
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.80 E-value=0.065 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999887
No 366
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.76 E-value=0.29 Score=53.53 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35699999999999999999998876
No 367
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.72 E-value=0.062 Score=52.53 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.67 E-value=0.097 Score=54.31 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 129 VGLESMFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 129 vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|-...+..+...+.. ....+|+|.|+.|+||||+|+.+..-.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444444432 245699999999999999999998776
No 369
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.66 E-value=0.064 Score=52.10 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999998875
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.66 E-value=0.061 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999887
No 371
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.65 E-value=0.21 Score=49.10 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=30.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCC----CCCCEEEEEEeCCc
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAP----NDFDVVIWVVVSKD 189 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~ 189 (863)
.-.+++|+|+.|+|||||++.++... ... ..-..++|+.-...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCC
Confidence 34699999999999999999998754 111 12346788775443
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.64 E-value=0.064 Score=53.96 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|+.|+||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999876
No 373
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.63 E-value=0.069 Score=53.71 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999998865
No 374
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.63 E-value=0.069 Score=49.20 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44699999999999999999998865
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.62 E-value=0.067 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.58 E-value=0.082 Score=53.18 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999876
No 377
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.54 E-value=0.041 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|.|+.|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 378
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.53 E-value=0.067 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 379
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.49 E-value=0.073 Score=55.26 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|+|+|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999999999999998876
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.49 E-value=0.076 Score=53.16 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 381
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.48 E-value=0.059 Score=57.01 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=62.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
...+++|+|+.|+||||+.+.+..... ......+ +++.++.... .. .......+.............+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i-~t~ed~~e~~--~~---~~~~~v~q~~~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHI-LTIEDPIEFV--HE---SKKCLVNQREVHRDTLGFSEALRSA 192 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEE-EEEESSCCSC--CC---CSSSEEEEEEBTTTBSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEE-EEccCcHHhh--hh---ccccceeeeeeccccCCHHHHHHHH
Confidence 345999999999999999999877651 1111122 2222221100 00 0000000000111223455678888
Q ss_pred hccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhhh
Q 048126 226 LSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEIC 270 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~ 270 (863)
|...+=+|++|++.+...+..+... ...|.-|++||-..+.+
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 9999999999999875544433222 12355688888765543
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.48 E-value=0.075 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.334 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999865
No 383
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.45 E-value=0.059 Score=52.87 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998764
No 384
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.40 E-value=2.1 Score=46.92 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=35.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIG 200 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 200 (863)
.-.++.|.|.+|+||||||..++..... . .=..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~-~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT-K-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH-H-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-h-CCCcEEEEECCC--CHHHHHHHHH
Confidence 4469999999999999999999887621 1 112577776543 4455555553
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.31 E-value=0.083 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|+|+.|+||||+++.++.-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 386
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.10 E-value=0.083 Score=51.73 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999998876
No 387
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.06 E-value=0.1 Score=56.77 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|+|.+|+||||+|..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.05 E-value=0.085 Score=49.77 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-.+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999998875
No 389
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.04 E-value=0.088 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987
No 390
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.01 E-value=0.088 Score=51.28 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998876
No 391
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.99 E-value=0.54 Score=51.06 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=56.2
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHH-HHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCc-----c
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLL-TKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFLDE-----S 209 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~-----~ 209 (863)
.++.+.. .+-..++|.|..|+|||+|| ..+.+.. ..-..++++-+++... +.++.+.+.+.-..... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 3444433 34457889999999999996 5666643 2222467888887754 55666666543222110 0
Q ss_pred ccCCChhH-----HHHHHHHHh--ccCcEEEEEeccCC
Q 048126 210 WKNGSLED-----KASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 210 ~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
.+...... ..-.+-+++ +++.+||++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 01111111 111223333 47899999999854
No 392
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.96 E-value=0.076 Score=50.62 Aligned_cols=24 Identities=46% Similarity=0.517 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 393
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.95 E-value=0.17 Score=54.39 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCC----EEEEEEeCCcc-CHHHHHHHHHHHhCCCC-----ccccCCChhH
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFD----VVIWVVVSKDL-QLEKIQEKIGRRIGFLD-----ESWKNGSLED 217 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 217 (863)
..++|.|..|+|||+|+.++++.. . .+-+ .++++-+.+.. .+.++.+.+.+.-.... .. ...+...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~-~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at-sd~p~~~ 227 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA-T--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL-ANDPAIE 227 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC-B--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE-TTSCHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH-H--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC-CCCCHHH
Confidence 457899999999999999999886 2 2223 66777777654 35566666554311100 01 1111111
Q ss_pred ------HHHHHHHHhc---cCcEEEEEeccCC
Q 048126 218 ------KASDILRILS---KKKFLLLLDDIWE 240 (863)
Q Consensus 218 ------~~~~l~~~l~---~kr~LlVlDdv~~ 240 (863)
..-.+.++++ ++.+||++||+..
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1223445554 6899999999854
No 394
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.95 E-value=0.061 Score=50.30 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998776
No 395
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.91 E-value=0.34 Score=53.28 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=42.1
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC-HHHHHHHH
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ-LEKIQEKI 199 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 199 (863)
+++.+.. .+-..++|.|..|+|||+|+.++++.. +-+.++++-+++... +.++.+.+
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555543 345688999999999999999998764 235788999988765 45566654
No 396
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.86 E-value=0.076 Score=53.11 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-.+|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999876
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.86 E-value=0.094 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..+|+|.|+.|+||||+|+.++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999887
No 398
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.86 E-value=0.092 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.670 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKIN 168 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~ 168 (863)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 399
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.80 E-value=0.17 Score=53.79 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=28.9
Q ss_pred HHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 135 FDKVWRCLG--EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 135 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++.+.+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3467899999999999999999998776
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.77 E-value=0.1 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINN 169 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~ 169 (863)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 401
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.76 E-value=0.097 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+|+|.|+.|+||||+|+.++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 402
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.75 E-value=0.095 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..|.|.|+.|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999887
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.75 E-value=0.095 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999876
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.66 E-value=0.099 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.193 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 405
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.66 E-value=0.099 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 406
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.66 E-value=0.14 Score=53.10 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCc
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKD 189 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 189 (863)
...++|+|+|-||+||||+|..++....+ ... .++-|.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~--~G~-~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGK-RVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTC-CEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH--CCC-eEEEEeCCCC
Confidence 46789999999999999999999887732 222 4666766543
No 407
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.65 E-value=0.64 Score=61.72 Aligned_cols=79 Identities=27% Similarity=0.283 Sum_probs=49.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHHhc
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRILS 227 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (863)
+-|-++|++|+|||++|+.+.... ..+ ..+.+..+...+...+++.+...+...... ...... -.-.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~-~g~~~~-------P~~~ 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTS-KGLTLL-------PKSD 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEET-TTEEEE-------EBSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhcccc-CCcccc-------CCCC
Confidence 566799999999999998877654 223 356677888777777777776655321100 000000 0003
Q ss_pred cCcEEEEEeccC
Q 048126 228 KKKFLLLLDDIW 239 (863)
Q Consensus 228 ~kr~LlVlDdv~ 239 (863)
+++.++.+||+.
T Consensus 1335 gk~~VlFiDEin 1346 (2695)
T 4akg_A 1335 IKNLVLFCDEIN 1346 (2695)
T ss_dssp SSCEEEEEETTT
T ss_pred CceEEEEecccc
Confidence 578888899964
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.63 E-value=0.11 Score=51.38 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....|.|.|+.|+||||+|+.+++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999887
No 409
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.60 E-value=0.23 Score=56.99 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=37.8
Q ss_pred CCccchhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 126 EPTVGLESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.+..++.+...+..+ ..+.|+|+.|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 34789999888888887655 588999999999999999999876
No 410
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.53 E-value=0.11 Score=51.74 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+. .+++|+|+.|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998754
No 411
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.53 E-value=0.12 Score=48.51 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+++|+|..|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998875
No 412
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.50 E-value=0.097 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINN 169 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~ 169 (863)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 446999999999999999999883
No 413
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.42 E-value=0.18 Score=52.26 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|+|+|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999998875
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.40 E-value=0.11 Score=53.55 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 415
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.35 E-value=0.071 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-hhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKIN-NKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 171 (863)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.30 E-value=0.2 Score=52.85 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34699999999999999999998876
No 417
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.28 E-value=0.11 Score=53.71 Aligned_cols=24 Identities=33% Similarity=0.366 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 418
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.24 E-value=0.11 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999876
No 419
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.21 E-value=0.13 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++|.|.|+.|+||||||..++...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 589999999999999999999875
No 420
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.17 E-value=0.5 Score=51.65 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=34.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
.-.++.|.|.+|+||||+|..++..... . =..++|++.-. +..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC--CHHHHHHHHHH
Confidence 3468999999999999999999888732 2 13577775443 34445544443
No 421
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.04 E-value=0.59 Score=52.23 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=36.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
.-.++.|.|.+|+||||+|.+++.... . .+=..++|++... +..++...++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHHHH
Confidence 346899999999999999999998872 1 1123577776544 45666666544
No 422
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.02 E-value=0.41 Score=52.14 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=57.3
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHH-HHHHhhhcCCCCCCC-EEEEEEeCCccC-HHHHHHHHHHHhCCCCc-----
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLL-TKINNKLLGAPNDFD-VVIWVVVSKDLQ-LEKIQEKIGRRIGFLDE----- 208 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~----- 208 (863)
.++.+.. .+-..++|.|..|+|||+|| ..+++.. +-+ .++++-+++... +.++.+.+.+.-.....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 4455543 34457889999999999995 4777764 245 457888887654 55666666653222110
Q ss_pred cccCCChhHH-----HHHHHHHh--ccCcEEEEEeccCC
Q 048126 209 SWKNGSLEDK-----ASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 209 ~~~~~~~~~~-----~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
..+....... .-.+.+++ +++.+||++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 0011111111 12233444 46899999999854
No 423
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.98 E-value=0.1 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 424
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.92 E-value=0.1 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999998654
No 425
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.85 E-value=0.26 Score=50.76 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=33.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
.-.+++|+|.+|+|||||++.++.... .... ..++|+.... +..++.+.+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G-~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG-TAMG-KKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH-HTSC-CCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcC-CeEEEEeCcC--CHHHHHHHHHH
Confidence 446999999999999999999988762 1111 1466665432 34444444443
No 426
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.75 E-value=0.14 Score=48.94 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.72 E-value=0.24 Score=48.81 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999998
No 428
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.69 E-value=0.28 Score=51.66 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=33.4
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccC
Q 048126 142 LGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQ 191 (863)
Q Consensus 142 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 191 (863)
+.....+++.+.|-||+||||+|..++...... ..=..++-|+.....+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCC
Confidence 334567899999999999999999998877200 1222466666654433
No 429
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.67 E-value=0.2 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.++.|+|.+|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998755
No 430
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.66 E-value=0.097 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999764
No 431
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.52 E-value=0.34 Score=50.71 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=34.4
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHH
Q 048126 142 LGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLE 193 (863)
Q Consensus 142 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 193 (863)
+.....+++.+.|-||+||||+|..++.... ..=..++-|+.....++.
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChh
Confidence 3344567888899999999999999998873 222346667666444333
No 432
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.50 E-value=0.15 Score=51.52 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45688899999999999999999876
No 433
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.50 E-value=0.36 Score=52.61 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=56.7
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHH-HHHhhhcCCCCCCC-EEEEEEeCCccC-HHHHHHHHHHHhCCCC-----c
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLT-KINNKLLGAPNDFD-VVIWVVVSKDLQ-LEKIQEKIGRRIGFLD-----E 208 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-----~ 208 (863)
.++.+.. .+-..++|.|..|+|||+||. .+++.. .-+ .++++-+++... +.++.+.+.+.-.... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 4444443 344578899999999999964 676654 345 357888887654 5566666654221110 0
Q ss_pred cccCCChhH-----HHHHHHHHh--ccCcEEEEEeccCC
Q 048126 209 SWKNGSLED-----KASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 209 ~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
..+...... ..-.+.+++ +++.+||++||+..
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 001111111 112233444 46899999999854
No 434
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.47 E-value=0.5 Score=60.50 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred HHHHHHhc-C--CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc--
Q 048126 136 DKVWRCLG-E--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW-- 210 (863)
Q Consensus 136 ~~l~~~L~-~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 210 (863)
..|-..|. . ..-+++.|+|.+|+||||||.+++..... .=..++|++....++... ++.++...+..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I 440 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLC 440 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEE
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEE
Confidence 34444454 2 24579999999999999999999888732 223688888777666432 55666543211
Q ss_pred -cCCChhHHHHHHHHHhc-cCcEEEEEeccCC
Q 048126 211 -KNGSLEDKASDILRILS-KKKFLLLLDDIWE 240 (863)
Q Consensus 211 -~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~ 240 (863)
+..+.++....+....+ .+.-+||+|-+..
T Consensus 441 ~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 441 SQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred eCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 23355555555554443 3566999999854
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.45 E-value=0.15 Score=52.01 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999999876
No 436
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.44 E-value=0.12 Score=51.21 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997654
No 437
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.38 E-value=0.16 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998764
No 438
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.32 E-value=0.33 Score=47.91 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=28.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEE
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWV 184 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 184 (863)
...|.|.|+.|+||||+++.+++... ..++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence 46899999999999999999998873 3456534443
No 439
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.32 E-value=0.15 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
.-.+++|+|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 440
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.31 E-value=0.089 Score=54.06 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+..+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 441
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.29 E-value=0.12 Score=52.34 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999997654
No 442
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.27 E-value=0.13 Score=52.01 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999998654
No 443
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.25 E-value=0.23 Score=48.17 Aligned_cols=37 Identities=27% Similarity=0.219 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK 188 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 188 (863)
.|.+.|.||+||||+|..++.... ...++. .++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V-~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL--RQGVRV-MAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH--HTTCCE-EEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH--HCCCCE-EEEEeCC
Confidence 477899999999999999988863 334543 3444443
No 444
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.22 E-value=0.25 Score=53.58 Aligned_cols=101 Identities=9% Similarity=0.107 Sum_probs=59.2
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCC-CCC-CCEEEEEEeCCccC-HHHHHHHHHHHhCCCC-----c
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGA-PND-FDVVIWVVVSKDLQ-LEKIQEKIGRRIGFLD-----E 208 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~-F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-----~ 208 (863)
+++.+.. .+-..++|.|..|+|||+|+.++++.. .. +.. =+.++++-+++... +.++.+.+...-.... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 3444433 233467789999999999999999987 22 111 14677887877653 5566666654321110 0
Q ss_pred cccCCChhH------HHHHHHHHhc---cCcEEEEEeccCC
Q 048126 209 SWKNGSLED------KASDILRILS---KKKFLLLLDDIWE 240 (863)
Q Consensus 209 ~~~~~~~~~------~~~~l~~~l~---~kr~LlVlDdv~~ 240 (863)
+ ...+... ..-.+.++++ ++.+||++||+..
T Consensus 221 t-sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 221 L-ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp E-TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 0 1111111 1223445554 5899999999743
No 445
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.21 E-value=0.46 Score=60.03 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=58.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---cCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW---KNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 222 (863)
.-+++.|+|.+|+||||||.+++..... .=..++|++.....+.. .++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 4579999999999999999999887621 22368899887776653 256666543321 233455555555
Q ss_pred HHHhc-cCcEEEEEeccCC
Q 048126 223 LRILS-KKKFLLLLDDIWE 240 (863)
Q Consensus 223 ~~~l~-~kr~LlVlDdv~~ 240 (863)
....+ .+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 54443 3556999999864
No 446
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.16 E-value=0.13 Score=51.06 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 447
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.13 E-value=0.15 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999874
No 448
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.09 E-value=0.16 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 449
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.09 E-value=0.21 Score=53.82 Aligned_cols=102 Identities=11% Similarity=0.170 Sum_probs=57.9
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCC--------CCCC-EEEEEEeCCcc-CHHHHHHHHHHHhCCC
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAP--------NDFD-VVIWVVVSKDL-QLEKIQEKIGRRIGFL 206 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~ 206 (863)
.++.+.. .+-..++|.|..|+|||+|+.++++.. ... ++-+ .++++-+.+.. .+.++.+.+.+.-...
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 3444432 233467899999999999999999886 321 1222 56777777654 3456666654421010
Q ss_pred -----CccccCCChhH-----HHHHHHHHhc---cCcEEEEEeccCC
Q 048126 207 -----DESWKNGSLED-----KASDILRILS---KKKFLLLLDDIWE 240 (863)
Q Consensus 207 -----~~~~~~~~~~~-----~~~~l~~~l~---~kr~LlVlDdv~~ 240 (863)
....+...... ..-.+.++++ ++.+||++||+..
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 00111112221 1223445554 6899999999854
No 450
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.07 E-value=0.14 Score=50.56 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 451
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.04 E-value=0.12 Score=50.35 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 452
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.03 E-value=0.14 Score=51.67 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44699999999999999999998654
No 453
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.03 E-value=0.14 Score=51.82 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999998755
No 454
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.01 E-value=1.1 Score=49.53 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=41.2
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCcc-CHHHHHHHH
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDL-QLEKIQEKI 199 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i 199 (863)
+++.|.. .+-..++|.|..|+|||+|+.++++.. +-+.++++-+.+.. .+.++++.+
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555543 345689999999999999999998875 23578888888763 344555544
No 455
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.01 E-value=0.16 Score=55.23 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998765
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.00 E-value=0.16 Score=52.51 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998753
No 457
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.00 E-value=0.17 Score=48.51 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 458
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.96 E-value=0.14 Score=51.55 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 459
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.95 E-value=0.44 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|+|=|..|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47888999999999999999988
No 460
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.93 E-value=0.32 Score=46.18 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44588999999999999999998764
No 461
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.93 E-value=0.78 Score=50.27 Aligned_cols=53 Identities=9% Similarity=-0.032 Sum_probs=36.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRR 202 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 202 (863)
.-.++.|.|.+|+||||+|..++..... ..=..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3468999999999999999999887621 111357777654 4456666665543
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.88 E-value=0.4 Score=46.50 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGR 201 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 201 (863)
..|.|-|+.|+||||+++.+++... ...+..+++..-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999998873 234433333322222223444555543
No 463
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.82 E-value=0.21 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 464
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.82 E-value=0.18 Score=51.88 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455799999999999999999998764
No 465
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.81 E-value=0.15 Score=51.00 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997764
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.78 E-value=0.16 Score=48.13 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-+.|.|.|+.|+||||||..++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578899999999999999998765
No 467
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.76 E-value=0.15 Score=51.23 Aligned_cols=26 Identities=42% Similarity=0.579 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997654
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.72 E-value=0.2 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...|+|.|..|+||||+++.+++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 469
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.70 E-value=0.15 Score=50.83 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997654
No 470
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.68 E-value=0.18 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 471
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.58 E-value=0.16 Score=50.77 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 472
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.57 E-value=0.14 Score=48.48 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 473
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.54 E-value=0.16 Score=51.18 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44699999999999999999998654
No 474
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.47 E-value=0.29 Score=49.32 Aligned_cols=113 Identities=11% Similarity=0.131 Sum_probs=56.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHH
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILR 224 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (863)
..-.+++|+|+.|+||||+++.+..-.. ..+...+++.- .+... +.+. ......+.....+.......+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g-~~i~~--~~~~---~~~~v~q~~~gl~~~~l~~~la~ 93 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIE-DPIEY--VFKH---KKSIVNQREVGEDTKSFADALRA 93 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEE-SSCCS--CCCC---SSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcC-Cccee--ecCC---cceeeeHHHhCCCHHHHHHHHHH
Confidence 3456999999999999999999987651 11122333221 11000 0000 00000000000011233456666
Q ss_pred HhccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchhh
Q 048126 225 ILSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLEI 269 (863)
Q Consensus 225 ~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v 269 (863)
.+...+=+|++|+..+......+... ...|.-|++||-...+
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 77667778889998644332222111 1235557777766543
No 475
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.47 E-value=0.16 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997654
No 476
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.34 E-value=0.17 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 477
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.33 E-value=0.17 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44699999999999999999997654
No 478
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.27 E-value=0.34 Score=53.61 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=32.1
Q ss_pred cchhHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 129 VGLESMFDKVWRCLG--EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 129 vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.|.+..+.+.+... .....+|.+.|+.|+||||+|+.++...
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 445555555555542 2345689999999999999999999998
No 479
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.25 E-value=0.2 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048126 149 IIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999876
No 480
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.25 E-value=0.17 Score=51.56 Aligned_cols=26 Identities=42% Similarity=0.524 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 481
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.23 E-value=0.21 Score=47.24 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 482
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.22 E-value=0.22 Score=52.90 Aligned_cols=27 Identities=22% Similarity=0.064 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
....+++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999999765
No 483
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.21 E-value=0.2 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-.|.|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998764
No 484
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.11 E-value=0.2 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 367899999999999999998764
No 485
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.06 E-value=0.23 Score=47.93 Aligned_cols=41 Identities=24% Similarity=0.118 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 131 LESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 131 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
++...+.+.+.......-.|+|+|.+|+|||||+..+.+..
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33334444444444445578899999999999999988654
No 486
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.05 E-value=0.61 Score=50.90 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=57.9
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHH-HHHHhhhcC---CCCCCC-EEEEEEeCCccC-HHHHHHHHHHHhCCCCc--
Q 048126 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLL-TKINNKLLG---APNDFD-VVIWVVVSKDLQ-LEKIQEKIGRRIGFLDE-- 208 (863)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~---~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~-- 208 (863)
.++.+.. .+-..++|.|..|+|||+|| ..+.+.... ..++-+ .++++-+++... +.++.+.+.+.-.....
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 4444443 34457889999999999995 567666510 012344 578888887654 55666666553211110
Q ss_pred ---cccCCChhHH-----HHHHHHHh--ccCcEEEEEeccCC
Q 048126 209 ---SWKNGSLEDK-----ASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 209 ---~~~~~~~~~~-----~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
..+....... .-.+.+++ +++.+||++||+..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 0011111111 11233444 46899999999854
No 487
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.04 E-value=0.22 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.+|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999887
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.03 E-value=0.53 Score=45.66 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCE
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDV 180 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~ 180 (863)
..|.|-|+.|+||||+++.+.+... ...+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v 37 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR--ERGIEV 37 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCc
Confidence 5889999999999999999999873 334554
No 489
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.02 E-value=0.37 Score=48.74 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCC
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSK 188 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 188 (863)
++|+|.|-||+||||+|..++.... +... .++.|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~-~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGK-TIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTC-CEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCC-cEEEEcCCC
Confidence 5788899999999999999998873 2222 456666553
No 490
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.01 E-value=0.35 Score=45.69 Aligned_cols=35 Identities=31% Similarity=0.582 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhh
Q 048126 135 FDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 135 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
+..+.+ +.......|+|+|.+|+|||||...+...
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 33345567889999999999999999854
No 491
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.94 E-value=0.42 Score=47.76 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=28.6
Q ss_pred HHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 135 FDKVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 135 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...+..++... ....|.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34466666543 24579999999999999999999864
No 492
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.93 E-value=0.43 Score=52.62 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 131 LESMFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 131 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
-...++.+.+.+...+ +.+.|.|.+|+||||++..+....
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3445555555665433 489999999999999999998877
No 493
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.73 E-value=0.56 Score=51.17 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHhhhcCCCCCCC-EEEEEEeCCccC-HHHHHHHHHHHhCCCC-----ccccCCCh---
Q 048126 147 VGIIGLYGMGGVGKTTLL-TKINNKLLGAPNDFD-VVIWVVVSKDLQ-LEKIQEKIGRRIGFLD-----ESWKNGSL--- 215 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-----~~~~~~~~--- 215 (863)
-..++|.|..|+|||+|| ..+++.. .-+ .++++-+++... +.++.+.+.+.-.... ...+....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 346789999999999996 4676654 234 467888887653 4555555544211100 00011111
Q ss_pred --hHHHHHHHHHh--ccCcEEEEEeccCC
Q 048126 216 --EDKASDILRIL--SKKKFLLLLDDIWE 240 (863)
Q Consensus 216 --~~~~~~l~~~l--~~kr~LlVlDdv~~ 240 (863)
....-.+.+++ +++.+||++||+..
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 11122223333 47899999999854
No 494
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.70 E-value=0.42 Score=46.04 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
+.|+|-|..|+||||+++.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999988
No 495
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.63 E-value=0.23 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 357899999999999999998764
No 496
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.62 E-value=0.18 Score=49.84 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhh
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (863)
.-.+|+|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4469999999999999999998764
No 497
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.56 E-value=0.25 Score=48.34 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
..++|.|++|+||||+|+.+++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 498
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.53 E-value=0.47 Score=46.13 Aligned_cols=108 Identities=11% Similarity=-0.010 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeC-CccCHHHHHHHHHHHhCCCCccccCCChhHHHHHHHHH
Q 048126 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVS-KDLQLEKIQEKIGRRIGFLDESWKNGSLEDKASDILRI 225 (863)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (863)
-.+..++|.-|.||||-+...+.+.. .....+.++-..- ..+. . .++..++...+.....+..+... .
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~~----~ 87 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRDVAQ----E 87 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEETTCCCC----------------CEEEEESSGGGGHH----H
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHHHHH----H
Confidence 35888999999999988887777762 2344444433322 2222 2 34444444332211122222222 2
Q ss_pred hccCcEEEEEeccCCccccccccCCCCCCCCCcEEEEecCchh
Q 048126 226 LSKKKFLLLLDDIWERVDLTKVGVPFPDPENKSKIVFTTRFLE 268 (863)
Q Consensus 226 l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~ 268 (863)
. ++--+|++|.+.--.+..++...+.. .|-.||+|.++.+
T Consensus 88 ~-~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 88 A-LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp H-TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred h-ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecccc
Confidence 2 22239999998643333333222221 5778999999843
No 499
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.50 E-value=0.65 Score=50.11 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=24.5
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 048126 144 EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (863)
Q Consensus 144 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (863)
...-.+++|+|+.|+||||+++.+....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3455799999999999999999998876
No 500
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.49 E-value=0.68 Score=58.51 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=61.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCccc---cCCChhHHHHHH
Q 048126 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNDFDVVIWVVVSKDLQLEKIQEKIGRRIGFLDESW---KNGSLEDKASDI 222 (863)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 222 (863)
+-++|-|+|+.|+||||||.++.... +..=..++|+.+-...+..- ++.+++..+.. ...+.++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45799999999999999999998766 23335688998877766553 77777765432 233445555555
Q ss_pred HHHhcc-CcEEEEEeccCC
Q 048126 223 LRILSK-KKFLLLLDDIWE 240 (863)
Q Consensus 223 ~~~l~~-kr~LlVlDdv~~ 240 (863)
...++. ..-+||+|-|..
T Consensus 1502 ~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHcCCCCEEEEccHHh
Confidence 555554 566999999843
Done!