Query 048127
Match_columns 251
No_of_seqs 137 out of 1264
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:31:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2E-28 4.2E-33 214.7 18.6 242 2-250 13-273 (358)
2 PRK11272 putative DMT superfam 99.9 2.1E-25 4.7E-30 191.5 17.0 219 4-250 10-230 (292)
3 PRK11453 O-acetylserine/cystei 99.9 4E-25 8.6E-30 190.4 15.9 222 2-250 4-232 (299)
4 TIGR00950 2A78 Carboxylate/Ami 99.9 7.8E-24 1.7E-28 178.5 15.1 207 14-250 1-209 (260)
5 PRK11689 aromatic amino acid e 99.9 7.6E-24 1.6E-28 182.1 15.2 223 2-250 4-232 (295)
6 TIGR00688 rarD rarD protein. T 99.9 1.3E-22 2.8E-27 171.0 13.3 217 2-250 2-225 (256)
7 PRK10532 threonine and homoser 99.9 6.7E-21 1.5E-25 163.7 17.8 214 2-250 12-226 (293)
8 PRK15430 putative chlorampheni 99.9 1.8E-21 3.8E-26 167.5 12.0 182 2-210 8-194 (296)
9 TIGR00817 tpt Tpt phosphate/ph 99.8 1.4E-18 3.1E-23 149.9 17.2 178 19-219 19-199 (302)
10 TIGR03340 phn_DUF6 phosphonate 99.8 1.1E-18 2.4E-23 149.0 11.3 221 4-250 3-228 (281)
11 PTZ00343 triose or hexose phos 99.8 2.1E-17 4.5E-22 145.3 16.4 178 18-218 65-252 (350)
12 COG0697 RhaT Permeases of the 99.7 6.4E-16 1.4E-20 131.5 16.8 221 3-250 8-232 (292)
13 PF06027 DUF914: Eukaryotic pr 99.6 3.2E-14 6.8E-19 123.1 17.7 197 10-219 21-220 (334)
14 PF00892 EamA: EamA-like trans 99.6 1.2E-15 2.6E-20 113.9 2.8 122 12-135 1-123 (126)
15 COG2510 Predicted membrane pro 99.5 7.5E-14 1.6E-18 101.9 9.0 132 2-135 3-136 (140)
16 COG2962 RarD Predicted permeas 99.5 1.4E-12 2.9E-17 108.5 13.7 211 2-242 7-221 (293)
17 TIGR00776 RhaT RhaT L-rhamnose 99.4 1.4E-11 3E-16 105.8 13.0 179 3-203 2-186 (290)
18 TIGR00950 2A78 Carboxylate/Ami 99.3 8.6E-12 1.9E-16 105.0 10.5 129 2-133 128-259 (260)
19 COG5006 rhtA Threonine/homoser 99.3 3.8E-11 8.3E-16 97.7 13.3 215 3-250 13-227 (292)
20 KOG4510 Permease of the drug/m 99.2 2.5E-12 5.5E-17 105.3 0.9 217 9-242 44-263 (346)
21 KOG2765 Predicted membrane pro 99.2 7.2E-11 1.6E-15 101.1 9.1 160 77-248 169-333 (416)
22 PF13536 EmrE: Multidrug resis 99.2 6.3E-12 1.4E-16 92.8 1.2 99 36-135 2-103 (113)
23 PRK10532 threonine and homoser 99.0 1.8E-09 3.9E-14 92.8 9.6 129 3-135 149-278 (293)
24 PRK11272 putative DMT superfam 99.0 1.5E-09 3.3E-14 93.2 8.7 131 3-135 151-282 (292)
25 PF08449 UAA: UAA transporter 99.0 1.9E-08 4.1E-13 86.9 15.5 172 31-216 32-205 (303)
26 PRK11689 aromatic amino acid e 98.8 1.7E-08 3.6E-13 86.9 8.6 127 3-135 157-284 (295)
27 PF04142 Nuc_sug_transp: Nucle 98.8 1.2E-07 2.7E-12 79.2 12.8 150 62-217 13-166 (244)
28 KOG1441 Glucose-6-phosphate/ph 98.8 8.2E-07 1.8E-11 76.4 16.9 178 21-219 36-220 (316)
29 TIGR03340 phn_DUF6 phosphonate 98.7 1.8E-08 3.9E-13 86.1 6.3 130 3-134 145-279 (281)
30 PLN00411 nodulin MtN21 family 98.7 8.3E-08 1.8E-12 84.6 9.1 128 5-135 192-325 (358)
31 PRK11453 O-acetylserine/cystei 98.7 1E-07 2.2E-12 82.2 9.4 132 3-135 144-284 (299)
32 TIGR00817 tpt Tpt phosphate/ph 98.6 3.5E-08 7.7E-13 85.1 5.0 133 3-135 146-290 (302)
33 PF03151 TPT: Triose-phosphate 98.5 1.2E-06 2.7E-11 67.6 8.9 131 4-135 2-150 (153)
34 COG0697 RhaT Permeases of the 98.4 1.8E-06 3.9E-11 73.3 8.7 129 2-135 154-284 (292)
35 PTZ00343 triose or hexose phos 98.3 2.4E-06 5.2E-11 75.3 8.9 133 3-135 195-345 (350)
36 KOG2234 Predicted UDP-galactos 98.3 0.00013 2.7E-09 63.0 18.5 204 4-217 17-235 (345)
37 TIGR00776 RhaT RhaT L-rhamnose 98.3 2.7E-06 6E-11 73.0 7.9 124 2-134 152-284 (290)
38 KOG2766 Predicted membrane pro 98.3 6.6E-07 1.4E-11 73.4 3.5 165 30-213 47-212 (336)
39 PRK15430 putative chlorampheni 98.2 2E-05 4.2E-10 67.9 11.7 127 6-135 153-282 (296)
40 KOG3912 Predicted integral mem 98.2 1.7E-05 3.6E-10 66.2 9.5 182 15-208 16-219 (372)
41 PRK15051 4-amino-4-deoxy-L-ara 98.1 2E-06 4.4E-11 63.1 3.2 65 71-135 41-106 (111)
42 KOG1444 Nucleotide-sugar trans 98.0 0.00017 3.6E-09 61.4 13.3 213 11-247 21-243 (314)
43 PRK02971 4-amino-4-deoxy-L-ara 98.0 2.6E-05 5.5E-10 58.7 6.4 116 1-135 1-119 (129)
44 COG5006 rhtA Threonine/homoser 97.9 0.00013 2.8E-09 60.2 9.5 122 4-128 150-271 (292)
45 KOG4314 Predicted carbohydrate 97.6 0.00029 6.4E-09 56.0 8.0 96 79-192 65-161 (290)
46 TIGR00688 rarD rarD protein. T 97.5 0.0024 5.3E-08 53.6 12.8 105 6-114 150-255 (256)
47 KOG1442 GDP-fucose transporter 97.5 0.0017 3.7E-08 54.3 10.8 199 30-247 60-270 (347)
48 PF06027 DUF914: Eukaryotic pr 97.5 0.00053 1.1E-08 59.8 8.1 132 2-135 168-302 (334)
49 KOG1443 Predicted integral mem 97.2 0.0026 5.7E-08 54.0 9.2 139 60-219 77-221 (349)
50 KOG1580 UDP-galactose transpor 97.1 0.00046 9.9E-09 56.4 3.3 163 69-246 88-254 (337)
51 KOG4510 Permease of the drug/m 97.1 0.00093 2E-08 55.6 4.8 128 5-135 194-321 (346)
52 KOG1581 UDP-galactose transpor 96.9 0.06 1.3E-06 45.8 14.5 196 30-242 50-251 (327)
53 COG2962 RarD Predicted permeas 96.7 0.029 6.3E-07 47.4 11.3 115 8-126 154-270 (293)
54 PF10639 UPF0546: Uncharacteri 96.6 0.0052 1.1E-07 44.9 5.4 108 8-135 2-111 (113)
55 PF08449 UAA: UAA transporter 96.6 0.017 3.7E-07 49.9 9.3 132 3-135 155-294 (303)
56 PF04657 DUF606: Protein of un 96.6 0.0075 1.6E-07 45.9 6.2 125 6-133 5-136 (138)
57 PF06800 Sugar_transport: Suga 96.5 0.038 8.2E-07 46.7 10.5 116 2-125 138-253 (269)
58 PF00893 Multi_Drug_Res: Small 96.4 0.0055 1.2E-07 43.3 4.1 54 74-127 36-90 (93)
59 PF00892 EamA: EamA-like trans 95.9 0.0059 1.3E-07 44.7 2.4 70 176-249 1-70 (126)
60 PF05653 Mg_trans_NIPA: Magnes 95.8 0.026 5.6E-07 48.8 6.5 66 70-135 53-119 (300)
61 COG5070 VRG4 Nucleotide-sugar 95.7 0.012 2.6E-07 47.9 3.5 154 80-247 81-239 (309)
62 PRK10452 multidrug efflux syst 95.4 0.006 1.3E-07 45.2 0.8 64 72-135 35-100 (120)
63 COG2076 EmrE Membrane transpor 95.3 0.0067 1.5E-07 43.6 0.9 63 73-135 36-100 (106)
64 PRK10650 multidrug efflux syst 95.1 0.061 1.3E-06 39.1 5.4 61 75-135 43-105 (109)
65 KOG1441 Glucose-6-phosphate/ph 95.0 0.01 2.2E-07 51.4 1.2 132 2-135 163-304 (316)
66 KOG2922 Uncharacterized conser 95.0 0.048 1E-06 46.8 5.2 67 69-135 66-133 (335)
67 PRK09541 emrE multidrug efflux 94.9 0.013 2.8E-07 42.7 1.4 63 73-135 36-100 (110)
68 PRK11431 multidrug efflux syst 94.9 0.015 3.2E-07 42.1 1.6 62 74-135 36-99 (105)
69 PF03151 TPT: Triose-phosphate 94.4 0.14 3E-06 39.1 6.1 53 167-219 1-59 (153)
70 PF06800 Sugar_transport: Suga 94.2 0.99 2.2E-05 38.2 11.3 119 64-199 43-168 (269)
71 PRK13499 rhamnose-proton sympo 94.0 0.81 1.7E-05 40.3 10.7 163 3-182 8-190 (345)
72 TIGR00803 nst UDP-galactose tr 93.7 0.2 4.3E-06 41.1 6.2 58 78-135 163-221 (222)
73 COG4975 GlcU Putative glucose 90.9 0.022 4.9E-07 47.0 -2.8 164 1-184 1-170 (288)
74 PRK13499 rhamnose-proton sympo 90.3 8.1 0.00018 34.1 12.3 117 2-120 174-316 (345)
75 KOG1580 UDP-galactose transpor 90.0 0.47 1E-05 39.2 4.1 127 5-135 175-310 (337)
76 COG2510 Predicted membrane pro 87.9 3.3 7.1E-05 31.0 6.9 76 168-246 5-80 (140)
77 KOG2765 Predicted membrane pro 87.5 2.8 6E-05 37.1 7.3 125 3-128 248-379 (416)
78 KOG1444 Nucleotide-sugar trans 85.8 3.5 7.5E-05 35.6 6.9 131 4-135 159-297 (314)
79 KOG1583 UDP-N-acetylglucosamin 85.1 4 8.8E-05 34.7 6.8 167 33-210 35-209 (330)
80 COG3238 Uncharacterized protei 85.0 1.4 3E-05 33.9 3.8 124 9-134 12-142 (150)
81 KOG1581 UDP-galactose transpor 82.1 26 0.00056 30.3 10.5 129 4-134 174-309 (327)
82 PF04657 DUF606: Protein of un 79.1 16 0.00035 27.6 7.8 52 168-219 3-54 (138)
83 PF04142 Nuc_sug_transp: Nucle 71.9 58 0.0012 27.2 12.4 125 3-127 115-241 (244)
84 COG3238 Uncharacterized protei 69.7 39 0.00085 26.0 7.7 54 166-219 5-58 (150)
85 COG4975 GlcU Putative glucose 68.8 1.8 3.9E-05 36.1 0.3 92 29-128 179-270 (288)
86 KOG1443 Predicted integral mem 58.2 62 0.0013 28.2 7.5 132 3-135 165-312 (349)
87 TIGR00803 nst UDP-galactose tr 55.7 1E+02 0.0023 24.8 8.6 30 163-192 82-111 (222)
88 COG5070 VRG4 Nucleotide-sugar 54.8 7.5 0.00016 32.1 1.5 106 29-135 183-293 (309)
89 KOG4831 Unnamed protein [Funct 48.8 28 0.0006 25.1 3.4 111 5-133 6-120 (125)
90 KOG1582 UDP-galactose transpor 38.3 19 0.0004 30.8 1.4 107 28-135 217-329 (367)
91 PF05653 Mg_trans_NIPA: Magnes 34.3 58 0.0013 28.1 3.9 30 163-192 4-33 (300)
92 KOG1582 UDP-galactose transpor 29.3 10 0.00022 32.3 -1.5 138 60-219 103-244 (367)
93 CHL00196 psbY photosystem II p 27.8 88 0.0019 17.8 2.6 19 166-184 6-24 (36)
94 PF05297 Herpes_LMP1: Herpesvi 27.0 21 0.00046 30.5 0.0 10 232-241 171-180 (381)
95 KOG1442 GDP-fucose transporter 25.6 4.4E+02 0.0096 22.8 8.5 131 4-135 187-324 (347)
96 KOG3912 Predicted integral mem 25.0 3.2E+02 0.0068 23.7 6.5 133 3-135 177-331 (372)
97 PF04342 DUF486: Protein of un 23.3 92 0.002 22.4 2.7 48 86-133 54-102 (108)
98 PF06298 PsbY: Photosystem II 21.6 1.3E+02 0.0029 17.1 2.6 19 166-184 6-24 (36)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=2e-28 Score=214.67 Aligned_cols=242 Identities=24% Similarity=0.327 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCHHHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKE-RAPLTFSLLVQFFFLAILGITAN 80 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~ 80 (251)
|+|.+|+...+..+...++.|.++++|++|..+.++|+.+|+++++++...++|++ +++.+++++.++...|+++ ..+
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~~~ 91 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-SMY 91 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-HHH
Confidence 78999999999999999999999999999999999999999999999987654432 3444677888888899998 578
Q ss_pred HHHHHHhhhccChhhhhhccchhHHHHHHHHHHh------hcccccccccceeE-EEEeEEeeCCcccccccccc-cc--
Q 048127 81 QRFYLLGLYYASPTFASAMQNSIPAVTFVMASSL------RLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHAT-YL-- 150 (251)
Q Consensus 81 ~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~------~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~-~~-- 150 (251)
+.+++.|++|+++++++++.+++|+++.++++++ +|||+++++++|+. +++|+.+ +..+.+.. ..
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~l-----l~~~~g~~~~~~~ 166 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALV-----VIFYHGPRVFVAS 166 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHH-----HHHccCccccccc
Confidence 8899999999999999999999999999999998 69999999999999 9999988 43211000 00
Q ss_pred -----CC--ccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeC-Ccc
Q 048127 151 -----EP--EHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVET-DIN 222 (251)
Q Consensus 151 -----~~--~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 222 (251)
+. .......+..++..|+++.++++++||+|++++||..+++++....+++++.++++...+.....++ +..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~ 246 (358)
T PLN00411 167 SPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS 246 (358)
T ss_pred ccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 00 0000011122456799999999999999999999998998766677888888888888777666543 222
Q ss_pred cceeccCchHHHHHHHHHHhhhhheeee
Q 048127 223 RWKIQSGEELFTIFYAGIVASGIVLSLQ 250 (251)
Q Consensus 223 ~~~~~~~~~~~~l~ylgi~~t~~~~~l~ 250 (251)
.|..........++|.+++ +.++|.+|
T Consensus 247 ~~~~~~~~~~~~i~y~~i~-t~lay~lw 273 (358)
T PLN00411 247 VWIIHFDITLITIVTMAII-TSVYYVIH 273 (358)
T ss_pred cceeccchHHHHHHHHHHH-HHHHHHHH
Confidence 3332223345578899976 56788665
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.94 E-value=2.1e-25 Score=191.46 Aligned_cols=219 Identities=16% Similarity=0.165 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 048127 4 LMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRF 83 (251)
Q Consensus 4 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 83 (251)
.+.++...++||++++++|...++ +||..++++|+.+++++++++...++++ +.+++++.+....|.++...++.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~ 85 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999887 9999999999999999998886543222 234667777778888876678889
Q ss_pred HHHhh-hccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCC
Q 048127 84 YLLGL-YYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKS 161 (251)
Q Consensus 84 ~~~~l-~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 161 (251)
++.+. +++++++++++.++.|+++.+++.+ +|||++++++.|+. +++|+.+ +..++ . .
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~l-----l~~~~------------~-~- 145 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVL-----LNSGG------------N-L- 145 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHH-----HhcCc------------c-c-
Confidence 99999 9999999999999999999999986 69999999999998 9999887 54211 1 1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHH
Q 048127 162 QNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIV 241 (251)
Q Consensus 162 ~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~ 241 (251)
+....|+++.++++++||.|.+..||..++ ++...+.+++.++++.+.+.....+++... .+..+.|..++|++++
T Consensus 146 ~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~ 221 (292)
T PRK11272 146 SGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVF 221 (292)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHH
Confidence 123579999999999999999998886543 345567789999999888877654332111 1122568899999999
Q ss_pred hhhhheeee
Q 048127 242 ASGIVLSLQ 250 (251)
Q Consensus 242 ~t~~~~~l~ 250 (251)
+|+++|.++
T Consensus 222 ~s~~~~~l~ 230 (292)
T PRK11272 222 GSIIAISAY 230 (292)
T ss_pred HHHHHHHHH
Confidence 999988654
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.93 E-value=4e-25 Score=190.42 Aligned_cols=222 Identities=13% Similarity=0.188 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQ 81 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 81 (251)
+..+..++++++||++++++|...++ +||..+.++|+.++++.++++. +++ +.+++. ....|+.....++
T Consensus 4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~--~~~----~~~~~~---~~~~g~~~~~~~~ 73 (299)
T PRK11453 4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV--ARP----KVPLNL---LLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--cCC----CCchHH---HHHHHHHHHHHHH
Confidence 45567888999999999999999987 9999999999999887766543 111 122232 3444555444566
Q ss_pred HHHHHhhhc-cChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCc
Q 048127 82 RFYLLGLYY-ASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSS 159 (251)
Q Consensus 82 ~~~~~~l~~-~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
.+++.+++| .++++++++.++.|+++.+++++++|||++++++.|.. +++|+.+ +..++ ..
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~l-----l~~~~------------~~ 136 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLV-----LIEDS------------LN 136 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHH-----hcccc------------CC
Confidence 778899998 58899999999999999999999999999999999998 9999988 55321 01
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCc--hhHHHHHHHHHHHHHHHHHHhheeCCc---ccceeccCchHHH
Q 048127 160 KSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPA--KLTLTSFTCFFRLIQFLAIAAFVETDI---NRWKIQSGEELFT 234 (251)
Q Consensus 160 ~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~ 234 (251)
..+....|+++.++++++||.|++++||..++.++ ......+++..+.+.........+++. ..+...+...|..
T Consensus 137 ~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (299)
T PRK11453 137 GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILS 216 (299)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHH
Confidence 11122469999999999999999999997666533 234456666666665555544443321 0111111246999
Q ss_pred HHHHHHHhhhhheeee
Q 048127 235 IFYAGIVASGIVLSLQ 250 (251)
Q Consensus 235 l~ylgi~~t~~~~~l~ 250 (251)
++|+|+++|+++|.++
T Consensus 217 l~~l~i~~t~~~~~l~ 232 (299)
T PRK11453 217 LMYLAFVATIVGYGIW 232 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999765
No 4
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=7.8e-24 Score=178.52 Aligned_cols=207 Identities=18% Similarity=0.161 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh
Q 048127 14 FVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASP 93 (251)
Q Consensus 14 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a 93 (251)
||.+++.+|..++++.||....+.|+..+.+++.++...+ .+++++......|.++...++.+++.|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 8999999999988778999999999999999888764321 133445557778888888999999999999999
Q ss_pred hhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHH
Q 048127 94 TFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLF 172 (251)
Q Consensus 94 ~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l 172 (251)
++++++.++.|+++.+++.+++|||++++++.|+. +++|+.+ +..++ +.++...|+.+.+
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~l-----i~~~~--------------~~~~~~~G~~~~l 134 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVL-----LLSDG--------------NLSINPAGLLLGL 134 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHh-----hccCC--------------cccccHHHHHHHH
Confidence 99999999999999999999999999999999999 9999988 54211 1123467999999
Q ss_pred HHHHHHHHHHHHhHhhhhhcCc-hhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHHhhhhheeee
Q 048127 173 GHCISWAGWMVLQAPLLKKHPA-KLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSLQ 250 (251)
Q Consensus 173 ~aa~~~A~~~v~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~~t~~~~~l~ 250 (251)
+++++|+.+.+..|+..++.+. +...+.+++.++.+.+.+.....+++. .+ ....|..+++++++++.++|.++
T Consensus 135 ~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 209 (260)
T TIGR00950 135 GSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLW 209 (260)
T ss_pred HHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766532 345555788899999888877654322 11 22468889999999999988654
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.91 E-value=7.6e-24 Score=182.11 Aligned_cols=223 Identities=11% Similarity=0.030 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQ 81 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 81 (251)
|++++++.+.++||++++.+|.+.++ +||..+.++|+.++.+++.++. ++++ .++.+++ ....+.++...++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~~~~-~~~~~~~----~~~~~~l~~~~~~ 75 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--GFPR-LRQFPKR----YLLAGGLLFVSYE 75 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--cccc-cccccHH----HHHHHhHHHHHHH
Confidence 56788899999999999999999988 9999999999999999988763 1111 1122222 2334555556778
Q ss_pred HHHHHhhhc----cChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCcccc
Q 048127 82 RFYLLGLYY----ASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYM 156 (251)
Q Consensus 82 ~~~~~~l~~----~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~ 156 (251)
.+++.+++| +++++++++.++.|+++.+++++++|||++++++.|+. +++|+.+ +..+++.. +. .
T Consensus 76 ~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~l-----i~~~~~~~--~~---~ 145 (295)
T PRK11689 76 ICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAW-----VLGGDNGL--SL---A 145 (295)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhh-----eecCCccc--hh---h
Confidence 888888765 57888899999999999999999999999999999999 9999988 55322100 00 0
Q ss_pred C-CcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHH
Q 048127 157 S-SSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTI 235 (251)
Q Consensus 157 ~-~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (251)
+ ..+..+...|+++++++++|||.|+++.||..+++ ++.... ...+.+.+.+.....++.... .+ .+.|..+
T Consensus 146 ~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~~--~~-~~~~~~l 218 (295)
T PRK11689 146 ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQPAMV--FS-LPAIIKL 218 (295)
T ss_pred hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCcccc--CC-HHHHHHH
Confidence 0 00111234699999999999999999999987665 455432 223334443433333221111 11 2468888
Q ss_pred HHHHHHhhhhheeee
Q 048127 236 FYAGIVASGIVLSLQ 250 (251)
Q Consensus 236 ~ylgi~~t~~~~~l~ 250 (251)
+|.++ +++++|.++
T Consensus 219 ~~~~~-~t~~~~~l~ 232 (295)
T PRK11689 219 LLAAA-AMGFGYAAW 232 (295)
T ss_pred HHHHH-HHHHHHHHH
Confidence 88885 789888765
No 6
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.89 E-value=1.3e-22 Score=171.01 Aligned_cols=217 Identities=13% Similarity=0.051 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCH-HHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKE-----RAPLTF-SLLVQFFFLAIL 75 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~-~~~~~~~~~g~l 75 (251)
|+++.++.++++||.+++++|. .++ +||.++.++|+.++.+++.++...+++++ .++.++ +++......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 6788999999999999999998 466 99999999999999998887764433211 111122 223345566666
Q ss_pred HHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCcc
Q 048127 76 GITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEH 154 (251)
Q Consensus 76 ~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~ 154 (251)
. ..++.++++|++++++++++++.++.|+++++++++++|||++++++.++. +++|+.+ +..++
T Consensus 80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l-----i~~~~--------- 144 (256)
T TIGR00688 80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS-----NIVLK--------- 144 (256)
T ss_pred H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-----HHHHc---------
Confidence 4 589999999999999999999999999999999999999999999999998 9999987 54211
Q ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHH
Q 048127 155 YMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFT 234 (251)
Q Consensus 155 ~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (251)
++ . ..+.++++++||.|.+..||..++ +........ ........+..... +.+.....+...+|..
T Consensus 145 -----~~-~----~~~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 210 (256)
T TIGR00688 145 -----GS-L----PWEALVLAFSFTAYGLIRKALKNT--DLAGFCLET-LSLMPVAIYYLLQT-DFATVQQTNPFPIWLL 210 (256)
T ss_pred -----CC-c----hHHHHHHHHHHHHHHHHHhhcCCC--CcchHHHHH-HHHHHHHHHHHHHh-ccCcccccCchhHHHH
Confidence 11 1 135788999999999998875432 222222111 11111221111111 1111101111236888
Q ss_pred HHHHHHHhhhhheeee
Q 048127 235 IFYAGIVASGIVLSLQ 250 (251)
Q Consensus 235 l~ylgi~~t~~~~~l~ 250 (251)
+++.|++ +.++|.++
T Consensus 211 l~~~g~~-t~i~~~l~ 225 (256)
T TIGR00688 211 LVLAGLI-TGTPLLAF 225 (256)
T ss_pred HHHHHHH-HHHHHHHH
Confidence 8899986 78888764
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.87 E-value=6.7e-21 Score=163.68 Aligned_cols=214 Identities=14% Similarity=0.132 Sum_probs=160.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQ 81 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 81 (251)
+++..++++++.|+++++++|.+.++ +||..+.++|+.+++++++++... +++ +.+++++......|+.. ...+
T Consensus 12 ~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~~--~~~~~~~~~~~~~g~~~-~~~~ 85 (293)
T PRK10532 12 LPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WRL--RFAKEQRLPLLFYGVSL-GGMN 85 (293)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hhc--cCCHHHHHHHHHHHHHH-HHHH
Confidence 56788999999999999999999998 999999999999999998876422 121 23556666677778765 5677
Q ss_pred HHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcC
Q 048127 82 RFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSK 160 (251)
Q Consensus 82 ~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
.+++++++|+|+++++++.++.|+++.+++ +||+.+. .++. +++|+.+ +..++ .+ .
T Consensus 86 ~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~l-----i~~~~-----------~~-~ 142 (293)
T PRK10532 86 YLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWF-----LLPLG-----------QD-V 142 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHhe-----eeecC-----------CC-c
Confidence 889999999999999999999999998776 3555443 3445 7888877 54211 01 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHH
Q 048127 161 SQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGI 240 (251)
Q Consensus 161 ~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi 240 (251)
++....|+++.++++++||.|++..||..+++ ++... .++..++++.+.+.....++. ..++ ...|..++|+|+
T Consensus 143 ~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~l~lgv 216 (293)
T PRK10532 143 SHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE-ALWH---WSILPLGLAVAI 216 (293)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc-ccCC---HHHHHHHHHHHH
Confidence 11235799999999999999999999987776 45554 466777888887777654321 1111 124656789999
Q ss_pred Hhhhhheeee
Q 048127 241 VASGIVLSLQ 250 (251)
Q Consensus 241 ~~t~~~~~l~ 250 (251)
++|.++|.+|
T Consensus 217 ~~t~~~~~l~ 226 (293)
T PRK10532 217 LSTALPYSLE 226 (293)
T ss_pred HHHHHHHHHH
Confidence 9999999765
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.86 E-value=1.8e-21 Score=167.48 Aligned_cols=182 Identities=14% Similarity=0.050 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccC--C-CCCHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKER--A-PLTFSLLVQFFFLAILGIT 78 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~l~~~ 78 (251)
|+++.++.++++||.+++.+|.. ++ +||.++.++|+.++.+++.++...+++++. + ..+++++. ....+.++..
T Consensus 8 ~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (296)
T PRK15430 8 QGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAVLIG 84 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHHHHH
Confidence 57788999999999999999985 55 999999999999999988877654322111 1 11334433 2335666667
Q ss_pred HHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccC
Q 048127 79 ANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMS 157 (251)
Q Consensus 79 ~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~ 157 (251)
.++.++++|++++|+++++++.++.|+++.+++++++|||++++++.|++ +++|+.+ +..++
T Consensus 85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~l-----i~~~~------------ 147 (296)
T PRK15430 85 GNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLV-----QLWTF------------ 147 (296)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-----HHHHc------------
Confidence 89999999999999999999999999999999999999999999999999 9999998 55211
Q ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhc-CchhHHHHHHHHHHHHHH
Q 048127 158 SSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKH-PAKLTLTSFTCFFRLIQF 210 (251)
Q Consensus 158 ~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 210 (251)
++ . ..+.++++++||.|++.+||..++. .+....+.+++.++....
T Consensus 148 --~~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (296)
T PRK15430 148 --GS-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYL 194 (296)
T ss_pred --CC-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 11 1 1467889999999999988764321 122334455555554443
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.81 E-value=1.4e-18 Score=149.87 Aligned_cols=178 Identities=12% Similarity=0.045 Sum_probs=147.0
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhh
Q 048127 19 IVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASA 98 (251)
Q Consensus 19 ~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~ 98 (251)
+..|.++++--+|....+.|+.++.+...+.... +.+++++.+++++++....|+++ ..++.+.+.+++|++++++++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSS-GLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence 4679998864579999999999998876655211 12223456788898899999996 678899999999999999999
Q ss_pred ccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHH
Q 048127 99 MQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCIS 177 (251)
Q Consensus 99 l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~ 177 (251)
+.++.|+++++++++++|||++++++.|+. +++|+.+ .... +.+....|+++.++++++
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l-----~~~~---------------~~~~~~~G~~~~l~a~~~ 156 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVAL-----ASDT---------------ELSFNWAGFLSAMISNIT 156 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhh-----hcCC---------------cccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 9999987 4311 111235699999999999
Q ss_pred HHHHHHHhHhhhh--hcCchhHHHHHHHHHHHHHHHHHHhheeC
Q 048127 178 WAGWMVLQAPLLK--KHPAKLTLTSFTCFFRLIQFLAIAAFVET 219 (251)
Q Consensus 178 ~A~~~v~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (251)
||+|++..||..+ ++ |+...+.+++..+++.++|.....|+
T Consensus 157 ~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~ 199 (302)
T TIGR00817 157 FVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEG 199 (302)
T ss_pred HHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999877 55 67889999999999999999876543
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.78 E-value=1.1e-18 Score=149.05 Aligned_cols=221 Identities=11% Similarity=0.046 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhh-hccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127 4 LMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLE-KKERAPLTFSLLVQFFFLAILGITANQR 82 (251)
Q Consensus 4 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 82 (251)
..+.+.++++|+...+..|...++ -++ ..++++..+.+.+.|+...+. ++++++.+++.+. ....+..+...++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWL-LLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHH-HHHHHHHHHHHHHH
Confidence 456788999999999999966555 344 357888888888888776532 2222333344443 44444444568999
Q ss_pred HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCC
Q 048127 83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKS 161 (251)
Q Consensus 83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 161 (251)
+++.|++++++++++.+.++.|+++.+++++++|||++++++.|+. ++.|+.+ +..++ ..+
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~l-----l~~~~-------------~~~ 140 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLV-----LGLSR-------------FAQ 140 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-----Hhccc-------------ccc
Confidence 9999999999999999999999999999999999999999999998 9999987 54211 011
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCch---hHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHH
Q 048127 162 QNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAK---LTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYA 238 (251)
Q Consensus 162 ~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~yl 238 (251)
....|+.+.++++++|+.|++..|+..++.++. ...+.+++...++...+.....++.. +.. ....+..++|.
T Consensus 141 -~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 216 (281)
T TIGR03340 141 -HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MFP-YARQILPSATL 216 (281)
T ss_pred -cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hhh-hHHHHHHHHHH
Confidence 123588899999999999999977754443221 12223333333222222222112111 111 12346678899
Q ss_pred HHHhhhhheeee
Q 048127 239 GIVASGIVLSLQ 250 (251)
Q Consensus 239 gi~~t~~~~~l~ 250 (251)
+.++++++|.++
T Consensus 217 ~~~~s~l~~~l~ 228 (281)
T TIGR03340 217 GGLMIGGAYALV 228 (281)
T ss_pred HHHHHHHHHHHH
Confidence 999999888653
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.76 E-value=2.1e-17 Score=145.27 Aligned_cols=178 Identities=8% Similarity=0.025 Sum_probs=141.1
Q ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhccChh
Q 048127 18 HIVSRVALNIGVS-KVAYPVHRNIIALILLSPFAYVLEKKERAPL--TFSLLVQFFFLAILGITANQRFYLLGLYYASPT 94 (251)
Q Consensus 18 ~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~ 94 (251)
....|.++++ +| |..+..+|+.++.++...+.... .+++++. ++++++.+...|+++... +...+.|+++++++
T Consensus 65 ~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~svs 141 (350)
T PTZ00343 65 VVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLGAVS 141 (350)
T ss_pred HHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHH
Confidence 4457999988 99 99999999999988765554332 2222333 345777888899998754 45567999999999
Q ss_pred hhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHH
Q 048127 95 FASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFG 173 (251)
Q Consensus 95 ~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~ 173 (251)
.++++.+++|+++++++++++|||++++++.++. .++|+.+ .... +.+....|++++++
T Consensus 142 ~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l-----~~~~---------------~~~~~~~G~~~~l~ 201 (350)
T PTZ00343 142 FTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVAL-----ASVK---------------ELHFTWLAFWCAML 201 (350)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHh-----eecc---------------cchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999998 5421 11123579999999
Q ss_pred HHHHHHHHHHHhHhhhhhcC------chhHHHHHHHHHHHHHHHHHHhhee
Q 048127 174 HCISWAGWMVLQAPLLKKHP------AKLTLTSFTCFFRLIQFLAIAAFVE 218 (251)
Q Consensus 174 aa~~~A~~~v~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (251)
|+++||.++++.||..++.+ ++.....++.+++++.++|.....|
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e 252 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFE 252 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999876532 3455566678899999999887554
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.71 E-value=6.4e-16 Score=131.53 Aligned_cols=221 Identities=20% Similarity=0.236 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR 82 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 82 (251)
.....+...+.|+.+....|...++..++....+.|+..+.+...+..... +.++.+.+++ +......+.++...++.
T Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (292)
T COG0697 8 GLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLE-PRGLRPALRP-WLLLLLLALLGLALPFL 85 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhh-cccccccccc-hHHHHHHHHHHHHHHHH
Confidence 346677788999999999999887635666666779999999844443221 1111111111 23355566666678999
Q ss_pred HHHHhhhccChhhhhhccchhHHHHHHHHH-HhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcC
Q 048127 83 FYLLGLYYASPTFASAMQNSIPAVTFVMAS-SLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSK 160 (251)
Q Consensus 83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~-l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
+++.+++++++++++.+.++.|+++.++++ +++|||++++++.+.. ++.|+.+ +..++ ..
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l-----v~~~~-------------~~ 147 (292)
T COG0697 86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLL-----ILLGG-------------GG 147 (292)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHh-----eecCC-------------Cc
Confidence 999999999999999999999999999997 6779999999999988 9999998 65322 01
Q ss_pred CCc-hHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHH-HHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHH
Q 048127 161 SQN-WTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTS-FTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYA 238 (251)
Q Consensus 161 ~~~-~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~yl 238 (251)
+++ ...|+.+.+.++++||.+.+..|+.. +. ++..... +++........+... .+.+ ... ....+..+.+.
T Consensus 148 ~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~~~~~~~ 220 (292)
T COG0697 148 GGILSLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLLLALLLLLLFFL-SGFG---API-LSRAWLLLLYL 220 (292)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHHHHHHHHh-cccc---ccC-CHHHHHHHHHH
Confidence 111 36899999999999999999988876 44 4455554 444422222222221 1111 111 12468899999
Q ss_pred HHHhhhhheeee
Q 048127 239 GIVASGIVLSLQ 250 (251)
Q Consensus 239 gi~~t~~~~~l~ 250 (251)
|++++++++.++
T Consensus 221 g~~~~~i~~~~~ 232 (292)
T COG0697 221 GVFSTGLAYLLW 232 (292)
T ss_pred HHHHHHHHHHHH
Confidence 999998877653
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.62 E-value=3.2e-14 Score=123.08 Aligned_cols=197 Identities=17% Similarity=0.182 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048127 10 LQFCFVGFHIVSRVALNIGVS-KVAYPVHRNIIALILLSPFAYVLEKK-ERAPLTFSLLVQFFFLAILGITANQRFYLLG 87 (251)
Q Consensus 10 ~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 87 (251)
.+++-..+...++...++|.+ |..-.+.-+..-.++..+....++.+ +..+..++++++++..+++.. ..+++...|
T Consensus 21 lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv-~aN~~~v~a 99 (334)
T PF06027_consen 21 LSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV-EANYLVVLA 99 (334)
T ss_pred HHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH-HHHHHHHHH
Confidence 344455555565555555554 44444455544444555554443322 122223345667888899985 688899999
Q ss_pred hhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHH
Q 048127 88 LYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTW 166 (251)
Q Consensus 88 l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (251)
++||+.+.+.++..+.-.++.+++++++|||.++.|++|+. ++.|+.+ +...|... + ++..++++...
T Consensus 100 ~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~l-----v~~sD~~~---~---~~~~~~~~~i~ 168 (334)
T PF06027_consen 100 YQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVL-----VVVSDVLS---G---SDSSSGSNPIL 168 (334)
T ss_pred hhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhh-----eeeecccc---c---ccCCCCCccch
Confidence 99999999999999988899999999999999999999998 9999887 55433211 1 01112345679
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeC
Q 048127 167 GCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVET 219 (251)
Q Consensus 167 G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (251)
||++++.++++||++++..++..|+. +......+..+++.+...+.....|.
T Consensus 169 GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~ 220 (334)
T PF06027_consen 169 GDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILER 220 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheeh
Confidence 99999999999999999999999987 46677778888999988888777765
No 14
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.56 E-value=1.2e-15 Score=113.90 Aligned_cols=122 Identities=21% Similarity=0.300 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048127 12 FCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYA 91 (251)
Q Consensus 12 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~ 91 (251)
++||...+..|...++ .||....++|+..+.+ +++.....++++.++.+++++......+.++...++.+++.+++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4799999999999998 9999999999999998 6666655544433455666677778888886678999999999999
Q ss_pred ChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 92 SPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 92 ~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
++++++.+.++.|+++.+++++++|||++++++.|+. .+.|+.+
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l 123 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVL 123 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 7766654
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.52 E-value=7.5e-14 Score=101.90 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCHHHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERA-PLTFSLLVQFFFLAILGITAN 80 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~ 80 (251)
+..+..++++++||...++.|..+++ +||......|..+..+++..+....++.+.. ..++|.|......|+.+ .+.
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence 45567888999999999999999988 9999999999999999999998876655432 35667777667777665 689
Q ss_pred HHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 81 QRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 81 ~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
..+||.+++..+++...=+-.+.|+++++++++++|||++.++|+|+. -.+|+++
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 999999999999999999999999999999999999999999999988 8888876
No 16
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.47 E-value=1.4e-12 Score=108.51 Aligned_cols=211 Identities=15% Similarity=0.142 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccC--C-CCCHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKER--A-PLTFSLLVQFFFLAILGIT 78 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~l~~~ 78 (251)
|+++..+.+.++||......|.. +. .|+.++...|...+..+++.+....++.+. . ..++|.+......+.+ +.
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i~ 83 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-IG 83 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-HH
Confidence 57788899999999999999986 55 899999999999999998887776544321 1 1233445555666666 56
Q ss_pred HHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccC
Q 048127 79 ANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMS 157 (251)
Q Consensus 79 ~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~ 157 (251)
.+...+.++.+.-..-++|+=.+..|++.++++.+++|||+++.|+++.. +.+|+.. .....
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~-----~~~~~------------ 146 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI-----QTWLL------------ 146 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-----HHHHc------------
Confidence 89999999999999999999999999999999999999999999999998 9999998 54311
Q ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHH
Q 048127 158 SSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFY 237 (251)
Q Consensus 158 ~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~y 237 (251)
++.+| ..+.=|++|+.|....|+ .+ . |+.+-.+...+.-....+.+.+..++++.....+.+..+..+..
T Consensus 147 --g~lpw-----val~la~sf~~Ygl~RK~-~~-v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~ 216 (293)
T COG2962 147 --GSLPW-----VALALALSFGLYGLLRKK-LK-V-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVL 216 (293)
T ss_pred --CCCcH-----HHHHHHHHHHHHHHHHHh-cC-C-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHH
Confidence 22233 123348999999988333 33 3 34444445555555555555555554332011122345767777
Q ss_pred HHHHh
Q 048127 238 AGIVA 242 (251)
Q Consensus 238 lgi~~ 242 (251)
.|.++
T Consensus 217 aG~vT 221 (293)
T COG2962 217 AGLVT 221 (293)
T ss_pred hhHHH
Confidence 77764
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.35 E-value=1.4e-11 Score=105.75 Aligned_cols=179 Identities=9% Similarity=0.043 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR 82 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 82 (251)
.++..++++++||++++..|... |.++.++. |..++.+++.......++.+ +.+++.+..-+..|.+ ....+.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence 35678889999999999999865 58888876 88888887776655533211 1123322222223333 567889
Q ss_pred HHHHhhhccChhhhhhccc-hhHHHHHHHHHHhhcccccccc----cceeE-EEEeEEeeCCccccccccccccCCcccc
Q 048127 83 FYLLGLYYASPTFASAMQN-SIPAVTFVMASSLRLEQVNNGR----RDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYM 156 (251)
Q Consensus 83 ~~~~~l~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~e~i~~~~----~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~ 156 (251)
+++.+.++++.+.+-.+.+ +.|++..+.+.+++|||.++++ ..|+. .++|+.+ ....++ +. .
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l-----~~~~~~----~~--~- 142 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYL-----TSRSKD----KS--A- 142 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHhe-----EEeccc----cc--c-
Confidence 9999999999999988887 8889999999999999999999 88888 8889887 542210 00 0
Q ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHH
Q 048127 157 SSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTC 203 (251)
Q Consensus 157 ~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~ 203 (251)
++.+..+...|..+.++++++|+.|.+..|+. ++ ||...++.+.
T Consensus 143 ~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~ 186 (290)
T TIGR00776 143 GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQA 186 (290)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHH
Confidence 00000233579999999999999999998764 34 5676644433
No 18
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.33 E-value=8.6e-12 Score=105.02 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKV--AYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITA 79 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~--~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 79 (251)
+.++..+.++++|+...+..|...++ .||. ....+|+.++.+++.++....++. ...+++++......+.++...
T Consensus 128 ~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 128 AGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHHH
Confidence 35678889999999999999998876 6644 555578999999999887664322 223556666677788888778
Q ss_pred HHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeE
Q 048127 80 NQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGT 133 (251)
Q Consensus 80 ~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~ 133 (251)
.+.+++.++++.++++++.+.++.|+++.+++++++|||++.+++.|.. .+.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999876 55543
No 19
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.33 E-value=3.8e-11 Score=97.72 Aligned_cols=215 Identities=16% Similarity=0.123 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR 82 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 82 (251)
|+..+..++..-=....+.|..... ++|.-.+.+|..++.++++++... . +++.+++++..+...|.-- ...+.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RP--w--r~r~~~~~~~~~~~yGvsL-g~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRP--W--RRRLSKPQRLALLAYGVSL-GGMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhH--H--HhccChhhhHHHHHHHHHH-HHHHH
Confidence 4667777777666777789998888 999999999999999999887422 1 2345666666677777653 46888
Q ss_pred HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeEEEEeEEeeCCccccccccccccCCccccCCcCCC
Q 048127 83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQ 162 (251)
Q Consensus 83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (251)
++|.+++..|-+.+..+-.+-|+....++. +|..-..|++. ++.|..+ +.... .+.+.
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~~d~vwvaL-AvlGi~l-----L~p~~------------~~~~~ 144 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RRLRDFVWVAL-AVLGIWL-----LLPLG------------QSVWS 144 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHhc----cchhhHHHHHH-HHHHHHh-----heecc------------CCcCc
Confidence 999999999999999999999998776553 22221223332 5667676 54221 11223
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHHh
Q 048127 163 NWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVA 242 (251)
Q Consensus 163 ~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~~ 242 (251)
-+..|..+.+.+..||+.|++..||.-+.. +..+-+...+.++++..+|+.....+. .-+ .......-+-.++.+
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag~-~l~---~p~ll~laLgvavlS 219 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAGP-ALF---SPSLLPLALGVAVLS 219 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcch-hhc---ChHHHHHHHHHHHHh
Confidence 457899999999999999999988866543 445556788999999999998754321 111 123344556788899
Q ss_pred hhhheeee
Q 048127 243 SGIVLSLQ 250 (251)
Q Consensus 243 t~~~~~l~ 250 (251)
|.+-|.++
T Consensus 220 SalPYsLE 227 (292)
T COG5006 220 SALPYSLE 227 (292)
T ss_pred cccchHHH
Confidence 99888764
No 20
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.21 E-value=2.5e-12 Score=105.29 Aligned_cols=217 Identities=17% Similarity=0.194 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048127 9 ALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGL 88 (251)
Q Consensus 9 ~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l 88 (251)
..+.++.+..++.|..++ .+|......|+..-.+.-.|.....+..-..+.++|. ++...|+.|. ......|+++
T Consensus 44 ~vs~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~--~LiLRg~mG~-tgvmlmyya~ 118 (346)
T KOG4510|consen 44 TVSYFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRK--WLILRGFMGF-TGVMLMYYAL 118 (346)
T ss_pred hhHHHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEE--EEEeehhhhh-hHHHHHHHHH
Confidence 344777777777776664 5899999999555544444433332111111112222 2566788885 4667889999
Q ss_pred hccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe-eCCccccccccccccCCccccCCcCCCchHH
Q 048127 89 YYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA-KCPPLLHQVTHATYLEPEHYMSSSKSQNWTW 166 (251)
Q Consensus 89 ~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (251)
+|.+-++|+++..+.|++|++++|.++|||.++...++.. .+.|+++ .-+.++. +++ .+|+ +++..+....
T Consensus 119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlF-G~~---t~g~---~~s~~~~~~~ 191 (346)
T KOG4510|consen 119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLF-GDT---TEGE---DSSQVEYDIP 191 (346)
T ss_pred hhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCccc-CCC---cccc---ccccccccCC
Confidence 9999999999999999999999999999999999999998 9999999 2222222 111 1121 1111123456
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceec-cCchHHHHHHHHHHh
Q 048127 167 GCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQ-SGEELFTIFYAGIVA 242 (251)
Q Consensus 167 G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ylgi~~ 242 (251)
|....+.++++.|--.++.|+.-|+. +....+.+..+++.+..+......+ .|..+ ...+|+....+|+++
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGvfg 263 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGVFG 263 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehhhh
Confidence 78888888887776666667755654 4222233444555554444333221 12211 234555555566543
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.20 E-value=7.2e-11 Score=101.09 Aligned_cols=160 Identities=11% Similarity=0.126 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccc
Q 048127 77 ITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHY 155 (251)
Q Consensus 77 ~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~ 155 (251)
.+..++++..++.+|+++..+++.++.-+||..++..+..||.+..+.++.. .+.|+++ +...+++- +
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GVii-----Vt~~~s~~---~--- 237 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVII-----VTMGDSKQ---N--- 237 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEE-----EEeccccc---c---
Confidence 4577889999999999999999999999999999999999999999999998 9999999 76543210 0
Q ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcC---chhHHHHHHHHHHHHHHHHHHhheeC-CcccceeccCch
Q 048127 156 MSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHP---AKLTLTSFTCFFRLIQFLAIAAFVET-DINRWKIQSGEE 231 (251)
Q Consensus 156 ~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 231 (251)
++........|+++.+++|+.||+|+++.||...+.. |....-.+..++..+++.|..++.+. ....++++...+
T Consensus 238 -~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q 316 (416)
T KOG2765|consen 238 -SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQ 316 (416)
T ss_pred -ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCce
Confidence 1112234579999999999999999999998877652 22222334444555555555544311 011223333334
Q ss_pred HHHHHHHHHHhhhhhee
Q 048127 232 LFTIFYAGIVASGIVLS 248 (251)
Q Consensus 232 ~~~l~ylgi~~t~~~~~ 248 (251)
...++..+.++|.++-.
T Consensus 317 ~~~vv~~~ligtvvSDy 333 (416)
T KOG2765|consen 317 FSLVVFNNLIGTVVSDY 333 (416)
T ss_pred eEeeeHhhHHHHHHHHH
Confidence 55566666767666543
No 22
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.17 E-value=6.3e-12 Score=92.80 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHH
Q 048127 36 VHRNIIALILLSPFAYVLEKKE--RAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASS 113 (251)
Q Consensus 36 ~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l 113 (251)
.+|+..+.+.+..+...+++.+ .+..+++.+.+....|.++...++.++++|+++++ +.++.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5899999999998887754322 12233444555666687776688999999999999 58889999999999999999
Q ss_pred hhcccccccccceeE-EEEeEEe
Q 048127 114 LRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 114 ~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
++|||++++++.+.. +++|+++
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~l 103 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVIL 103 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999998 9999998
No 23
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.01 E-value=1.8e-09 Score=92.80 Aligned_cols=129 Identities=13% Similarity=0.105 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR 82 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 82 (251)
+.+..+.++++|+...+..|...++ .+|....... .++++.+.++...... ....+...+......|+++..+.+.
T Consensus 149 G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~~~ 224 (293)
T PRK10532 149 GAALALGAGACWAIYILSGQRAGAE-HGPATVAIGS-LIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHH-HHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999998766 7887775544 5666667776654321 1123444444456788888889999
Q ss_pred HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
++++++++.++++++.+.+++|+++.++++++++|+++..+++|.. -+.|++.
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~ 278 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMG 278 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 5655555
No 24
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.00 E-value=1.5e-09 Score=93.22 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR 82 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 82 (251)
..+..+.++++|+...+..|...++ ++.....+++.++++.+.++....+.......+.+.+......++++....+.
T Consensus 151 G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~ 228 (292)
T PRK11272 151 GAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAIS 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999886433 45667788999999988887654322211122456677778889888888999
Q ss_pred HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
++++++++.++++++.+.+++|++++++++++++|+++..+++|.. -+.|+.+
T Consensus 229 l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~ 282 (292)
T PRK11272 229 AYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVL 282 (292)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 6666655
No 25
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.00 E-value=1.9e-08 Score=86.92 Aligned_cols=172 Identities=15% Similarity=0.091 Sum_probs=130.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHH
Q 048127 31 KVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVM 110 (251)
Q Consensus 31 p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll 110 (251)
|..+.+..+....+.-.+.....++++.++.+ +..+...+++. .+...+.+.+++|.|...-.+.-+..|+.++++
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~ 107 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLFKFPKSRKIP---LKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMIL 107 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccccCCCcCh---HHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHH
Confidence 78899999998888776665443312222333 34456677775 478899999999999999999999999999999
Q ss_pred HHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhh
Q 048127 111 ASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLL 189 (251)
Q Consensus 111 ~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~ 189 (251)
+.+++|||.+++++.+.. -.+|+++ ....+.....+ ......++..|+.+.+++.++-|...+.++|..
T Consensus 108 ~~l~~~k~y~~~~~~~v~li~~Gv~~-----~~~~~~~~~~~-----~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~ 177 (303)
T PF08449_consen 108 GVLILGKRYSRRQYLSVLLITIGVAI-----FTLSDSSSSSS-----SNSSSFSSALGIILLLLSLLLDAFTGVYQEKLF 177 (303)
T ss_pred HHHhcCccccHHHHHHHHHHHhhHhe-----eeecccccccc-----cccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 8888887 44332111000 011112234599999999999999999999998
Q ss_pred hhcC-chhHHHHHHHHHHHHHHHHHHhh
Q 048127 190 KKHP-AKLTLTSFTCFFRLIQFLAIAAF 216 (251)
Q Consensus 190 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 216 (251)
++++ ++...+++..+++.+..++....
T Consensus 178 ~~~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 178 KKYGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8775 36788899999999988887776
No 26
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.82 E-value=1.7e-08 Score=86.94 Aligned_cols=127 Identities=11% Similarity=0.119 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR 82 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 82 (251)
+.++.+.++++|+...+..|...++ .++.... +..+.+.+.+.....+ ......+.+.+......++ ...+.+.
T Consensus 157 G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~---~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~~~ 230 (295)
T PRK11689 157 SYGLAFIGAFIWAAYCNVTRKYARG-KNGITLF---FILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFGYA 230 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC-CCchhHH---HHHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHHHH
Confidence 4567889999999999999997655 7876543 2334444444333322 1112245555655666664 4568899
Q ss_pred HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
++++++++.++++++.+.+++|++.+++++++++|+++..+++|.+ -+.|+.+
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~ 284 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLL 284 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999987 6666655
No 27
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.79 E-value=1.2e-07 Score=79.17 Aligned_cols=150 Identities=13% Similarity=0.074 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCcc
Q 048127 62 TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPL 140 (251)
Q Consensus 62 ~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~ 140 (251)
++|+...+..-+++. ..++.+.+.++++.+|+.-.++..+-.++|++++++++|+|++++||.++. -.+|+.+
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~l----- 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVL----- 86 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHhe-----
Confidence 456667788889886 589999999999999999999999999999999999999999999999998 7788887
Q ss_pred ccccccccc--cCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCc-hhHHHHHHHHHHHHHHHHHHhhe
Q 048127 141 LHQVTHATY--LEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPA-KLTLTSFTCFFRLIQFLAIAAFV 217 (251)
Q Consensus 141 ~~~~~~~~~--~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 217 (251)
...+++... .+.+......++.+...|.++++.++++-++..++.+|..|+.+. ....+..-.++|.+..++.....
T Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~ 166 (244)
T PF04142_consen 87 VQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS 166 (244)
T ss_pred eecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 322111000 000000000112345789999999999999999999999988643 23333344455555555554443
No 28
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.76 E-value=8.2e-07 Score=76.39 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=137.1
Q ss_pred HHHHHh--cCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhh
Q 048127 21 SRVALN--IGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASA 98 (251)
Q Consensus 21 ~k~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~ 98 (251)
.|..++ +.--|..+...++..+.+.+......+..+..+..++..+..++-+|+.. ++...+-..+++|.+.+..-.
T Consensus 36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q~ 114 (316)
T KOG1441|consen 36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQT 114 (316)
T ss_pred eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhHHHH
Confidence 577777 43458888888888888777766554332222212333455677778875 578889999999999999999
Q ss_pred ccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHH
Q 048127 99 MQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCIS 177 (251)
Q Consensus 99 l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~ 177 (251)
+=.++|.++.++++++.+|+.++.....+. -..|+.+ -.. +..+. +..|....+++.+.
T Consensus 115 iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~i-----as~--------------~e~~f-n~~G~i~a~~s~~~ 174 (316)
T KOG1441|consen 115 IKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAI-----ASV--------------TELSF-NLFGFISAMISNLA 174 (316)
T ss_pred HHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEE-----eee--------------ccccc-cHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 8888888 432 11122 35899999999999
Q ss_pred HHHHHHHhHhhhhh--c-CchhHHHHHHHHHHHHHHH-HHHhheeC
Q 048127 178 WAGWMVLQAPLLKK--H-PAKLTLTSFTCFFRLIQFL-AIAAFVET 219 (251)
Q Consensus 178 ~A~~~v~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 219 (251)
.+..+++.|+..++ . -|+..+..++.-++...++ |.....|+
T Consensus 175 ~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~ 220 (316)
T KOG1441|consen 175 FALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEG 220 (316)
T ss_pred HHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcc
Confidence 99999999998842 2 1578888888888888888 77776554
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.74 E-value=1.8e-08 Score=86.10 Aligned_cols=130 Identities=13% Similarity=-0.037 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSKVA----YPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGIT 78 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~----~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 78 (251)
.....+.++++|+...+..|...++ .+|.. ...+.+...++.+.+....++++. ...+...+......+.+...
T Consensus 145 g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~ 222 (281)
T TIGR03340 145 AYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-MFPYARQILPSATLGGLMIG 222 (281)
T ss_pred HHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHHHH
Confidence 3456778889999999998876443 45432 223333333222222221111111 11122223334556666666
Q ss_pred HHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEE
Q 048127 79 ANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTI 134 (251)
Q Consensus 79 ~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~ 134 (251)
..+.++++++++.+++.++.+.+++|++..+++++++||+++..+++|.. .+.|+.
T Consensus 223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~ 279 (281)
T TIGR03340 223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLV 279 (281)
T ss_pred HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHH
Confidence 88999999999999999999999999999999999999999999999977 666654
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.69 E-value=8.3e-08 Score=84.63 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHHHHhhhccC-C---CCCHHHHHHHHHHHHHHHHH
Q 048127 5 MALLALQFCFVGFHIVSRVALNIGVSKV-AYPVHRNIIALILLSPFAYVLEKKER-A---PLTFSLLVQFFFLAILGITA 79 (251)
Q Consensus 5 ~~ll~~~~~wg~~~~~~k~~~~~~~~p~-~~~~~R~~~a~l~l~~~~~~~~~~~~-~---~~~~~~~~~~~~~g~l~~~~ 79 (251)
++++.++++|+...+..|...++ .||. ...++...++.+.+.+.....++.+. . ..+... ......++. ..+
T Consensus 192 ~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~-t~l 268 (358)
T PLN00411 192 ALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAII-TSV 268 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHH-HHHHHHHHH-HHH
Confidence 56778899999999999988776 6554 55667777777766655554332211 1 122222 224444544 457
Q ss_pred HHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 80 NQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 80 ~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.+.++++++++.+|+.++...++.|++++++++++++|+++..+++|.+ -+.|+.+
T Consensus 269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l 325 (358)
T PLN00411 269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYA 325 (358)
T ss_pred HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999988 7777777
No 31
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.69 E-value=1e-07 Score=82.17 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSK---VAYPVHRNIIALILLSPFAYVLEKKE-----RAPLTFSLLVQFFFLAI 74 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p---~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~ 74 (251)
..++.+.++++|+...+..|...++ .++ .....+-...+.+.+.......+... ....+.+.+......|+
T Consensus 144 G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 144 GFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 4567888999999999999987654 332 23333334444333333322222111 11345567777888999
Q ss_pred HHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 75 LGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 75 l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
++....+.+++.++++.++++++.+.+++|++..++++++++|+++..+++|.. -+.|+.+
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l 284 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYI 284 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 998899999999999999999999999999999999999999999999999987 6666665
No 32
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.63 E-value=3.5e-08 Score=85.10 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHHHHhhhccCCC---------CCH-HHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNI-GVSKVAYPVHRNIIALILLSPFAYVLEKKERAP---------LTF-SLLVQFFF 71 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~---------~~~-~~~~~~~~ 71 (251)
+.+..+.+++.|+...+..|...++ +.||.....+-...+.+.+.|+....+...... ... ..+.....
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLV 225 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHH
Confidence 4567888999999999999988761 389999999999999999999876543111000 000 11111122
Q ss_pred HHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 72 LAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 72 ~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.+.......+.+++.+++++++..+++..++.|++++++++++++|+++..+++|.. .+.|+.+
T Consensus 226 ~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l 290 (302)
T TIGR00817 226 AAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL 290 (302)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence 222222234467778999999999999999999999999999999999999999988 8888776
No 33
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.45 E-value=1.2e-06 Score=67.59 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHHHHHHHHHhhhccC-C---CC-------CHHHH
Q 048127 4 LMALLALQFCFVGFHIVSRVALNI------GVSKVAYPVHRNIIALILLSPFAYVLEKKER-A---PL-------TFSLL 66 (251)
Q Consensus 4 ~~~ll~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~---~~-------~~~~~ 66 (251)
++..+.+.++-+...+..|...++ +.++.....+-...+.+.++|.....++.+. + .. +.+.+
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence 456778899999999999888766 6899999999999999999999888654431 1 01 22344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 67 VQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 67 ~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
..+...|+++ ...+...+..+++++|...++....-.+.+.++++++++|+++.+++.|+. ++.|...
T Consensus 82 ~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 82 FLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 5555667776 478899999999999999999999999999999999999999999999998 8888765
No 34
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.37 E-value=1.8e-06 Score=73.27 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPV-HRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITAN 80 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 80 (251)
+...+.+.+++.|+.+.+..|... + .++..... +.+........+... .... ...+.+.+......|+++....
T Consensus 154 ~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 154 LGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFFL--SGFG-APILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHHh--cccc-ccCCHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999998776 4 67777776 444422222222211 1111 2345566777788888887678
Q ss_pred HHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 81 QRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 81 ~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
+.+++.++++.+++.++.+.++.|++..++++++++|+++.+++.|.. -+.|+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l 284 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLL 284 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 5555554
No 35
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.34 E-value=2.4e-06 Score=75.32 Aligned_cols=133 Identities=13% Similarity=0.076 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHHHHHHHHHhhhccC-----------CCCCHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNI------GVSKVAYPVHRNIIALILLSPFAYVLEKKER-----------APLTFSL 65 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-----------~~~~~~~ 65 (251)
+.+..++++++|+...+..|...++ ..++.....+-...+.++++|+....+..+. .......
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGI 274 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHH
Confidence 5677888999999999999998764 1456656666678899999998764321110 0001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 66 LVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 66 ~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.........+...+++.+.+.+++++++.++++..++.|++++++++++++|+++..+++|.+ .+.|+.+
T Consensus 275 ~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 275 IIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 111111222222344445557999999999999999999999999999999999999999988 8777765
No 36
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.32 E-value=0.00013 Score=63.04 Aligned_cols=204 Identities=12% Similarity=0.035 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHHHHhhhc----cCCCC------CHHHHHHHH
Q 048127 4 LMALLALQFCFVGFHIVSRVALNIG---VSKVAYPVHRNIIALILLSPFAYVLEKK----ERAPL------TFSLLVQFF 70 (251)
Q Consensus 4 ~~~ll~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~~------~~~~~~~~~ 70 (251)
++.++...+-++..-+..|..-.++ ..|...++.-=.+-.++-..+.++..|+ ..+.+ .+++...+.
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 4566777788888888999887665 5566666666566666555555544211 11111 333445566
Q ss_pred HHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccc
Q 048127 71 FLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATY 149 (251)
Q Consensus 71 ~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~ 149 (251)
.-+++. ++++.++|.++.+.+|+.-.+...+--+-|+++..+++++|.+++||.++. -.+|+.+ +-.+. ..
T Consensus 97 vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~-----vQ~~~--~~ 168 (345)
T KOG2234|consen 97 VPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVAL-----VQLPS--LS 168 (345)
T ss_pred HHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-----HhccC--CC
Confidence 667776 578889999999999999999999999999999999999999999999998 8888887 32100 00
Q ss_pred cCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCch-hHHHHHHHHHHHHHHHHHHhhe
Q 048127 150 LEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAK-LTLTSFTCFFRLIQFLAIAAFV 217 (251)
Q Consensus 150 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 217 (251)
+.+ .. .+..+.+..+|...++.+++.-++..++..+.+|+-..+ ..-+.--.++|.+..+...+..
T Consensus 169 ~~~-a~-~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~ 235 (345)
T KOG2234|consen 169 PTG-AK-SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ 235 (345)
T ss_pred CCC-cc-CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 001 00 112234567999999999999999999999988764222 2222222334444444444443
No 37
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.28 E-value=2.7e-06 Score=73.02 Aligned_cols=124 Identities=10% Similarity=0.118 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH---HHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNI---IALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGIT 78 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 78 (251)
|.....+.+++.++...+..|.. + .||....+.... +++.++.+.. + +.++..++. .......|++ ..
T Consensus 152 ~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~--~--~~~~~~~~~-~~~~~~~Gi~-~~ 222 (290)
T TIGR00776 152 KGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH--I--LAKPLKKYA-ILLNILPGLM-WG 222 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH--h--cccchHHHH-HHHHHHHHHH-HH
Confidence 56778888999999999999975 3 788888554444 3444333322 1 112222223 3334457877 57
Q ss_pred HHHHHHHHhhh-ccChhhhhhccchhHHHHHHHHHHhhccccccccc----ceeE-EEEeEE
Q 048127 79 ANQRFYLLGLY-YASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRR----DGFA-KVLGTI 134 (251)
Q Consensus 79 ~~~~~~~~~l~-~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~----~g~~-~~~G~~ 134 (251)
..+.+++.+.+ +.+++.++.+.+..|+...+.+.+++||+.+++++ +|.+ -+.|+.
T Consensus 223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~ 284 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAAN 284 (290)
T ss_pred HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHH
Confidence 88899999999 99999999999999999999999999999999998 7765 444443
No 38
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.27 E-value=6.6e-07 Score=73.44 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=121.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHH
Q 048127 30 SKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFV 109 (251)
Q Consensus 30 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~l 109 (251)
.|..=.|.-+..-.++-.|+..+|+ + .++ ..|.+++..++... -.+++.-.|.|||+-+.+.++-.-.-..+.+
T Consensus 47 ~Pt~QtFl~Y~LLalVY~~~~~fR~-~---~~~-~~~~hYilla~~DV-EaNy~vV~AyQyTsmtSi~lLDcwaip~v~~ 120 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALVYGPIMLFRR-K---YIK-AKWRHYILLAFVDV-EANYFVVKAYQYTSMTSIMLLDCWAIPCVLV 120 (336)
T ss_pred CccHHHHHHHHHHHHHHhhHHHhhh-H---HHH-HHHHHhhheeEEee-cccEEEeeehhhcchHHHHHHHHhhhHHHHH
Confidence 3556667777777777777777743 2 111 22445777788775 4556777899999998888886654445678
Q ss_pred HHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhh
Q 048127 110 MASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPL 188 (251)
Q Consensus 110 l~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~ 188 (251)
++|+++|.|.++.++.|.+ ++.|+.. +..+|-+ . | +..++.+-..||.+++++|-+||+.++.....
T Consensus 121 lsw~fLktrYrlmki~gV~iCi~Gvvm-----vV~sDV~--a-g----d~aggsnp~~GD~lvi~GATlYaVSNv~EEfl 188 (336)
T KOG2766|consen 121 LSWFFLKTRYRLMKISGVVICIVGVVM-----VVFSDVH--A-G----DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFL 188 (336)
T ss_pred HHHHHHHHHHhhheeeeEEeEecceEE-----EEEeeec--c-c----cccCCCCCccCcEEEEecceeeeeccccHHHH
Confidence 9999999999999999999 9999999 5433310 0 2 22333455789999999999999999998888
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHH
Q 048127 189 LKKHPAKLTLTSFTCFFRLIQFLAI 213 (251)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (251)
.||. |...++..-.++|++....=
T Consensus 189 vkn~-d~~elm~~lgLfGaIIsaIQ 212 (336)
T KOG2766|consen 189 VKNA-DRVELMGFLGLFGAIISAIQ 212 (336)
T ss_pred HhcC-cHHHHHHHHHHHHHHHHHHH
Confidence 8887 55666677778888887665
No 39
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.22 E-value=2e-05 Score=67.91 Aligned_cols=127 Identities=16% Similarity=0.092 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 048127 6 ALLALQFCFVGFHIVSRVALNIG-VSKVAYPVHRNIIALILLSPFAYVLEKKE-RAPLTFSLLVQFFFLAILGITANQRF 83 (251)
Q Consensus 6 ~ll~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~~~~ 83 (251)
..+.++++|+.+.+..|...++. .++.....+-..++.+...+.. ..... ....+...+......|+. ....+.+
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~ 229 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSSTSHMGQNPMSLNLLLIAAGIV-TTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCcccccCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 45678899999999988864321 1122223333334333322221 11010 111122222333444544 4578999
Q ss_pred HHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 84 YLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 84 ~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
++.++++.+++.++.+.+++|++..++++++++|+++..++.|.. -+.|+.+
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v 282 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAI 282 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877 5445444
No 40
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.16 E-value=1.7e-05 Score=66.19 Aligned_cols=182 Identities=18% Similarity=0.161 Sum_probs=122.9
Q ss_pred HHHHHHHHHHH---hcCCC----ccHHHHHHHHHHHHHHHHHHHHhhhccCCC-------------CCHHHHHHHHHHHH
Q 048127 15 VGFHIVSRVAL---NIGVS----KVAYPVHRNIIALILLSPFAYVLEKKERAP-------------LTFSLLVQFFFLAI 74 (251)
Q Consensus 15 g~~~~~~k~~~---~~~~~----p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~ 74 (251)
+.+-+.+|.+- ++|-| |...+..-|+.-..++..+.+.+.|...+. .+.+. ...+.-++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal 94 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPAL 94 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHH
Confidence 34556677764 23333 455555555555566666655554332110 01221 12233455
Q ss_pred HHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCc
Q 048127 75 LGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPE 153 (251)
Q Consensus 75 l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~ 153 (251)
..+ ....+.+.|+.+|+++.-..+-...-+|+.+++.-+++++++.++|+|+. -.+|.+++|..=+...+ +
T Consensus 95 ~Di-~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~-----~-- 166 (372)
T KOG3912|consen 95 CDI-AGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT-----D-- 166 (372)
T ss_pred HHH-hhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc-----C--
Confidence 554 56778999999999999999999999999999999999999999999998 88888883222111000 0
Q ss_pred cccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcC-chhHHHHHHHHHHHH
Q 048127 154 HYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHP-AKLTLTSFTCFFRLI 208 (251)
Q Consensus 154 ~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~-~~~~~~~~~~~~~~l 208 (251)
....-++...|+++.+++-+.-|+.+++-.|..+++. +|...+.|+-++|.+
T Consensus 167 ---p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v 219 (372)
T KOG3912|consen 167 ---PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLV 219 (372)
T ss_pred ---CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHH
Confidence 0011124568999999999999999999888877753 589999999988844
No 41
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.12 E-value=2e-06 Score=63.06 Aligned_cols=65 Identities=22% Similarity=0.095 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 71 FLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 71 ~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
..++.+....+.++..++++.|.+.+..+.++.|+++.+++++++|||++.++++|+. .++|++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~ 106 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI 106 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3444666788999999999999999999989999999999999999999999999998 8877765
No 42
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00017 Score=61.42 Aligned_cols=213 Identities=12% Similarity=0.147 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCccHHHH--HHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048127 11 QFCFVGFHIVSRVALNIGVSKVAYPV--HRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGL 88 (251)
Q Consensus 11 ~~~wg~~~~~~k~~~~~~~~p~~~~~--~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l 88 (251)
++.--.+-++.|.++..-=-|..+.. .+.+...+.+...-.. +--+.++++++..+..+-..++- .+....-..++
T Consensus 21 ~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~sl 98 (314)
T KOG1444|consen 21 CLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSL 98 (314)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHH-HHHHHHccccc
Confidence 33334455667888866222444443 7777777766544211 11123456777777777777774 46777778999
Q ss_pred hccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHH
Q 048127 89 YYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWG 167 (251)
Q Consensus 89 ~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 167 (251)
+|.+...-+++-...|+++++...+++|.|++.+.+.+.. -.+|... ...++ .+ -...|
T Consensus 99 k~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~-----~~~~d--------------~s-f~~~g 158 (314)
T KOG1444|consen 99 KYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVA-----AAFTD--------------LS-FNLRG 158 (314)
T ss_pred cccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHh-----hcccc--------------ce-ecchh
Confidence 9999999999999999999999999999999999998876 5555444 22111 11 12348
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhcC-chhHHHHHHHHHHHHHHHHHHhheeCCc------ccceeccCchHHHHHHHHH
Q 048127 168 CIFLFGHCISWAGWMVLQAPLLKKHP-AKLTLTSFTCFFRLIQFLAIAAFVETDI------NRWKIQSGEELFTIFYAGI 240 (251)
Q Consensus 168 ~ll~l~aa~~~A~~~v~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~l~ylgi 240 (251)
..+++...+.-+.+.+..|+..+.-. +...++++..+.+...+....++.++.. ..|.- ...+..+..-++
T Consensus 159 Y~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~~lScv 236 (314)
T KOG1444|consen 159 YSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVMLLSCV 236 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHHHHHHH
Confidence 99999999999999999888765431 2456788898998888888887765411 11110 123556666666
Q ss_pred Hhhhhhe
Q 048127 241 VASGIVL 247 (251)
Q Consensus 241 ~~t~~~~ 247 (251)
++-++.|
T Consensus 237 ~gf~isy 243 (314)
T KOG1444|consen 237 MGFGISY 243 (314)
T ss_pred HHHHHHH
Confidence 6555544
No 43
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.96 E-value=2.6e-05 Score=58.71 Aligned_cols=116 Identities=17% Similarity=0.109 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 048127 1 MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITAN 80 (251)
Q Consensus 1 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 80 (251)
|++++..+...++-+..-++-|...++ .+....... . ...+.. . . .+ ......|+....+.
T Consensus 1 ~~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~~-----~---~----~p----~~~i~lgl~~~~la 61 (129)
T PRK02971 1 MMGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALLA-----F---G----LA----LRAVLLGLAGYALS 61 (129)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHHH-----H---h----cc----HHHHHHHHHHHHHH
Confidence 678888888888889999999999877 554432221 1 000000 0 0 01 11456777777889
Q ss_pred HHHHHHhhhccChhhhhhccchhHHHHHHHHHH--hhcccccccccceeE-EEEeEEe
Q 048127 81 QRFYLLGLYYASPTFASAMQNSIPAVTFVMASS--LRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 81 ~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l--~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
+.++..++++.+++.+.-+.+..+..+.+.++. ++||+++.++++|+. -++|+.+
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~l 119 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWL 119 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888888874 899999999999998 8888777
No 44
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00013 Score=60.16 Aligned_cols=122 Identities=14% Similarity=0.074 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 048127 4 LMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRF 83 (251)
Q Consensus 4 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 83 (251)
..+.+.+..+|...-+..|.+-+. .|-..-+..-+.++.++.+|+-.-.. ...-.+++....-...+++...++|.+
T Consensus 150 v~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~a--g~~l~~p~ll~laLgvavlSSalPYsL 226 (292)
T COG5006 150 VALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQA--GPALFSPSLLPLALGVAVLSSALPYSL 226 (292)
T ss_pred HHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhc--chhhcChHHHHHHHHHHHHhcccchHH
Confidence 356677899999999999887644 56666677889999999999865321 111234555555567788888899999
Q ss_pred HHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE
Q 048127 84 YLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA 128 (251)
Q Consensus 84 ~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~ 128 (251)
...+++..|...-+++.+++|.+.++.++++++|+++..||+++.
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~ 271 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIA 271 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999864
No 45
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.64 E-value=0.00029 Score=55.99 Aligned_cols=96 Identities=18% Similarity=0.130 Sum_probs=82.5
Q ss_pred HHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccC
Q 048127 79 ANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMS 157 (251)
Q Consensus 79 ~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~ 157 (251)
..++.|..+++..++++++.+....-.++.++++..++||+...++++.. ++-|++. +..-|
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVm-----iay~D------------ 127 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVM-----IAYAD------------ 127 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEE-----EEecc------------
Confidence 56778999999999999999999999999999999999999999999988 9999888 65322
Q ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhc
Q 048127 158 SSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKH 192 (251)
Q Consensus 158 ~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~ 192 (251)
.+..+...|+.+...+++.-|+|-+.-|+...+.
T Consensus 128 -N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA 161 (290)
T KOG4314|consen 128 -NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNA 161 (290)
T ss_pred -chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1223456899999999999999999988877653
No 46
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.53 E-value=0.0024 Score=53.59 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q 048127 6 ALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERA-PLTFSLLVQFFFLAILGITANQRFY 84 (251)
Q Consensus 6 ~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~~~~~ 84 (251)
..+.++++|+...+..|...++ ++......-.. ......+........... ..+.+++......|+. ....+.++
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~ 225 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAF 225 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHHH
Confidence 4567889999999999886443 33332222211 111111111111111001 1223467767777877 56899999
Q ss_pred HHhhhccChhhhhhccchhHHHHHHHHHHh
Q 048127 85 LLGLYYASPTFASAMQNSIPAVTFVMASSL 114 (251)
Q Consensus 85 ~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~ 114 (251)
+.++++.+++.++.+.+++|+++.+++.+.
T Consensus 226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998754
No 47
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0017 Score=54.27 Aligned_cols=199 Identities=13% Similarity=0.018 Sum_probs=118.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhc----cCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchh
Q 048127 30 SKVAYPVHRNIIALILLSPFAYVLEKK----ERAP--LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSI 103 (251)
Q Consensus 30 ~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~--~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~ 103 (251)
.|..+.++.-++...+-+.+.....+- ..++ ++.+...++.-..+.- .+...+-..+++|.+.+.--+=-++.
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt 138 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT 138 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence 366666666666555544433222211 1111 2222222222223221 12333446777888776655555788
Q ss_pred HHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCC-cCCCchHHHHHHHHHHHHHHHHH
Q 048127 104 PAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSS-SKSQNWTWGCIFLFGHCISWAGW 181 (251)
Q Consensus 104 Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~ll~l~aa~~~A~~ 181 (251)
-+|+.++.++++|||-+..-..+.. -+.|-.+ .. +++ ..+.-...|.++...|.++-|++
T Consensus 139 tvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l------Gv------------dqE~~~~~ls~~GvifGVlaSl~vAln 200 (347)
T KOG1442|consen 139 TVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL------GV------------DQEGSTGTLSWIGVIFGVLASLAVALN 200 (347)
T ss_pred hhHHHHhHHhhcccccccccceeehhheehhee------cc------------ccccccCccchhhhHHHHHHHHHHHHH
Confidence 8899999999999998766655555 3333222 11 111 11222358999999999999999
Q ss_pred HHHhHhhhhhcCc-hhHHHHHHHHHHHHHHHHHHhheeCCcccce---eccCchHHHHHHHHHHhhhhhe
Q 048127 182 MVLQAPLLKKHPA-KLTLTSFTCFFRLIQFLAIAAFVETDINRWK---IQSGEELFTIFYAGIVASGIVL 247 (251)
Q Consensus 182 ~v~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ylgi~~t~~~~ 247 (251)
.+..||......| -..++.+..+.+.++++|...+.++-...+. ......|..+..-|+++=.++|
T Consensus 201 aiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy 270 (347)
T KOG1442|consen 201 AIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY 270 (347)
T ss_pred HHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhh
Confidence 9998876655444 5678899999999999998877543111222 1112346666767777666655
No 48
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.47 E-value=0.00053 Score=59.82 Aligned_cols=132 Identities=11% Similarity=0.021 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CHHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPL--TFSLLVQFFFLAILGITA 79 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~~ 79 (251)
++.+.++.+++++|.+.+.-|...++ .|+..+..+=-+++.++..+.....++++..+. +.+... +.....+....
T Consensus 168 ~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~-~~v~~~~~lf~ 245 (334)
T PF06027_consen 168 LGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIG-LLVGYALCLFL 245 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHH-HHHHHHHHHHH
Confidence 45788899999999999999998887 888888877777777777777666565553333 333332 22223333344
Q ss_pred HHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 80 NQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 80 ~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.+.+.-..+++++|+...+=.-+..++..+++.+++|+++++..++|.+ -++|.++
T Consensus 246 ~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vv 302 (334)
T PF06027_consen 246 FYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVV 302 (334)
T ss_pred HHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhhe
Confidence 5556667888998887777566788899999999999999999999987 7778777
No 49
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.23 E-value=0.0026 Score=53.95 Aligned_cols=139 Identities=12% Similarity=0.082 Sum_probs=91.7
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeC
Q 048127 60 PLTFSLLV-QFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKC 137 (251)
Q Consensus 60 ~~~~~~~~-~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g 137 (251)
...|++.. +..-+|+. .+.--.+..++++|++.+.-+..=+..++|+.+++..+.-||.++.-..-.. -..|+.+
T Consensus 77 ~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glfl-- 153 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFL-- 153 (349)
T ss_pred CCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeE--
Confidence 35665543 33334444 3566778899999999999999999999999999999999998877655444 4455555
Q ss_pred CccccccccccccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcC----chhHHHHHHHHHHHHHHHHH
Q 048127 138 PPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHP----AKLTLTSFTCFFRLIQFLAI 213 (251)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 213 (251)
.... +.+-...|-.++..+.++-++-=...++.++|.| +|....+...-...+.++|.
T Consensus 154 ---ft~K---------------sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~ 215 (349)
T KOG1443|consen 154 ---FTYK---------------STQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPL 215 (349)
T ss_pred ---EEec---------------ccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHH
Confidence 4421 1112346777777766665555444444455543 36665655556667777777
Q ss_pred HhheeC
Q 048127 214 AAFVET 219 (251)
Q Consensus 214 ~~~~~~ 219 (251)
.+.+|+
T Consensus 216 ~l~fEG 221 (349)
T KOG1443|consen 216 SLLFEG 221 (349)
T ss_pred HHHHcc
Confidence 777665
No 50
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.00046 Score=56.40 Aligned_cols=163 Identities=8% Similarity=0.000 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccc
Q 048127 69 FFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHA 147 (251)
Q Consensus 69 ~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~ 147 (251)
+..+++- ..+.+.....+++|.|=-...+=-+.-|+-+++++.++.|++.++++-.... -++|+++ ....++.
T Consensus 88 YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GVal-----FmYK~~K 161 (337)
T KOG1580|consen 88 YAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVAL-----FMYKENK 161 (337)
T ss_pred HHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHH-----hhccccc
Confidence 4445544 3567788889999998777767678889999999999999999999998887 8888887 4432211
Q ss_pred cccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcC-chhHHHHHHHHHHHHHHHHHHhheeCCcc--cc
Q 048127 148 TYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHP-AKLTLTSFTCFFRLIQFLAIAAFVETDIN--RW 224 (251)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~ 224 (251)
....++.+..+|+++.+++--.=+.-...|.|..+++. +...++++..+.+++.+..-.++.++-.. .+
T Consensus 162 --------v~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF 233 (337)
T KOG1580|consen 162 --------VGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYF 233 (337)
T ss_pred --------cCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHH
Confidence 11223445678999999988888888888888766653 36788899999999988766665532110 01
Q ss_pred eeccCchHHHHHHHHHHhhhhh
Q 048127 225 KIQSGEELFTIFYAGIVASGIV 246 (251)
Q Consensus 225 ~~~~~~~~~~l~ylgi~~t~~~ 246 (251)
..-.+..|+.+..+++. +.++
T Consensus 234 ~~RhP~~~~~l~l~ai~-s~LG 254 (337)
T KOG1580|consen 234 VQRHPYVFWDLTLLAIA-SCLG 254 (337)
T ss_pred HHhccHHHHHHHHHHHH-HHhh
Confidence 11112346666666664 3444
No 51
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.06 E-value=0.00093 Score=55.63 Aligned_cols=128 Identities=12% Similarity=-0.009 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 048127 5 MALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFY 84 (251)
Q Consensus 5 ~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~ 84 (251)
.+.+...++-+..++..|..-++ .+......+=..++.+.-+..+..-..-+.|. .++++..+..+|++|. +.|.+.
T Consensus 194 ~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~-cgkdr~l~~~lGvfgf-igQIll 270 (346)
T KOG4510|consen 194 VAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVVSLIGCASIGAVQLPH-CGKDRWLFVNLGVFGF-IGQILL 270 (346)
T ss_pred HHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHHHHHHHhhccceecCc-cccceEEEEEehhhhh-HHHHHH
Confidence 44555666667777777776454 67666666656666555444433323223333 4455555778899984 899999
Q ss_pred HHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeEEEEeEEe
Q 048127 85 LLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIA 135 (251)
Q Consensus 85 ~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~~~~G~~~ 135 (251)
..|+|.-.|+-.+++.++.-++..+...++++|-+++..|.|++.+++..+
T Consensus 271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v 321 (346)
T KOG4510|consen 271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV 321 (346)
T ss_pred HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence 999999999999999999999999999999999999999999875555444
No 52
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.93 E-value=0.06 Score=45.84 Aligned_cols=196 Identities=14% Similarity=0.066 Sum_probs=119.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccc--hhHHHH
Q 048127 30 SKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQN--SIPAVT 107 (251)
Q Consensus 30 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~--~~Pv~~ 107 (251)
+|....+..-+.+.+.-..... .++.. ...++.+..+...++.+. ....+.+.+++|.+=-.-.+-=+ +.| +
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~--~~k~~-~~~~apl~~y~~is~tn~-~s~~~~yeaLKyvSyPtq~LaKscKmIP--V 123 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLK--WWKKE-LSGVAPLYKYSLISFTNT-LSSWCGYEALKYVSYPTQTLAKSCKMIP--V 123 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh--ccccc-CCCCCchhHHhHHHHHhh-cchHHHHHHHHhccchHHHHHHHhhhhH--H
Confidence 4666666666666665533322 22221 222333556777788874 78899999999997333333222 466 4
Q ss_pred HHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhH
Q 048127 108 FVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQA 186 (251)
Q Consensus 108 ~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~ 186 (251)
++...++.|+|.+.++-+... --.|+.+ ....++..+ ....+.++...|..++...-+.=++-+..|+
T Consensus 124 mlmg~Lvy~~ky~~~eYl~~~LIs~Gvsi-----F~l~~~s~s------~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd 192 (327)
T KOG1581|consen 124 MLMGTLVYGRKYSSFEYLVAFLISLGVSI-----FSLFPNSDS------SSKSGRENSPIGILLLFGYLLFDGFTNATQD 192 (327)
T ss_pred HHHHHHHhcCccCcHHHHHHHHHHhheee-----EEEecCCCC------ccccCCCCchHhHHHHHHHHHHHhhHHhHHH
Confidence 578899999999999876554 5556665 332221000 0112234567899999999888889999999
Q ss_pred hhhhhcC-chhHHHHHHHHHHHHHHHHHHhheeCC--cccceeccCchHHHHHHHHHHh
Q 048127 187 PLLKKHP-AKLTLTSFTCFFRLIQFLAIAAFVETD--INRWKIQSGEELFTIFYAGIVA 242 (251)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ylgi~~ 242 (251)
+..+++. ++..++++..+++++.-.......+.. +..+.-..++.+.-++-++.++
T Consensus 193 ~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~g 251 (327)
T KOG1581|consen 193 SLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCG 251 (327)
T ss_pred HHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhh
Confidence 9988764 478888999999988887663322211 1111111224455666666654
No 53
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.74 E-value=0.029 Score=47.44 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 048127 8 LALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKE--RAPLTFSLLVQFFFLAILGITANQRFYL 85 (251)
Q Consensus 8 l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 85 (251)
+..++.||..+..=|.. ++|+.+=...-...-.+.-+....+.+... ....+.+++..+...|.+. ..+..++.
T Consensus 154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~ 229 (293)
T COG2962 154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFA 229 (293)
T ss_pred HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHH
Confidence 45678888888887765 377777766666666655554444433221 1112445566677888885 68999999
Q ss_pred HhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccce
Q 048127 86 LGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDG 126 (251)
Q Consensus 86 ~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g 126 (251)
.|-+..|-+.-++++|..|....+++.++++|+++.-+..+
T Consensus 230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~ 270 (293)
T COG2962 230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVT 270 (293)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999888655
No 54
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.64 E-value=0.0052 Score=44.90 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048127 8 LALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLG 87 (251)
Q Consensus 8 l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 87 (251)
++++++||.+.++.|.+.+. .++..-.. |..--... .+ .+++ +..-=.++ -.....|++.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll--------~n~~----y~ipf~lN-q~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LL--------LNPK----YIIPFLLN-QSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HH--------HhHH----HHHHHHHH-HHHHHHHHHH
Confidence 45789999999999999765 55544431 32111111 00 0111 12222233 3567788999
Q ss_pred hhccChhhhhhcc-chhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 88 LYYASPTFASAMQ-NSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 88 l~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
+...+-+.+.-+. ++.=++|++.++++.+|..+++++.|+. -..|+.+
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 9999999988885 6788899999999988888999999988 8888765
No 55
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.58 E-value=0.017 Score=49.85 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCCCccHHHHHHHHHHHHHHHHHHHH--hhhccC-CC---CCHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVAL-NIGVSKVAYPVHRNIIALILLSPFAYV--LEKKER-AP---LTFSLLVQFFFLAIL 75 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~~-~~---~~~~~~~~~~~~g~l 75 (251)
+++.++.+.++-|...+..+... +++.++.+..++-..++.+...+.... .+..+. .+ ..+..+..+....+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 46678888899999999987776 446899999999999999988777666 221110 00 111233444455555
Q ss_pred HHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 76 GITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 76 ~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
+ ...+.+.+.-.+..++...+++..+--+.+.+++..+++++++..+|.|+. .+.|..+
T Consensus 235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 5 356667777889999999999999999999999999999999999999998 8877776
No 56
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.57 E-value=0.0075 Score=45.90 Aligned_cols=125 Identities=10% Similarity=0.004 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 048127 6 ALLALQFCFVGFHIVSRVALNIGV-SKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFY 84 (251)
Q Consensus 6 ~ll~~~~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~ 84 (251)
..+.+...-+....+.-...++ . +|....+.-+..+.+.+..+....+++..++.++..+ +...-|++|. ..-.+.
T Consensus 5 la~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG~-~~V~~~ 81 (138)
T PF04657_consen 5 LALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLGV-FFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHHH-HHHHHH
Confidence 3444555555555554333334 4 5999999999999999988888765543222222222 3455788874 677788
Q ss_pred HHhhhccChhhhhhccch-hHHHHHHHHHH----hhcccccccccceeE-EEEeE
Q 048127 85 LLGLYYASPTFASAMQNS-IPAVTFVMASS----LRLEQVNNGRRDGFA-KVLGT 133 (251)
Q Consensus 85 ~~~l~~~~a~~a~~l~~~-~Pv~~~ll~~l----~~~e~i~~~~~~g~~-~~~G~ 133 (251)
....+...++.+..+.-+ .-+...+++.+ ..|+|++.+|.+|.. .++|+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv 136 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGV 136 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 888999998888877554 56666667764 457788889988876 55554
No 57
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.51 E-value=0.038 Score=46.71 Aligned_cols=116 Identities=15% Similarity=0.063 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQ 81 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 81 (251)
|..+.++++.+.+.....+.|.. + +||....+=....-.+.-+.+..+. +++ ..+++.+++ ...|++ ....+
T Consensus 138 kgi~~Ll~stigy~~Y~~~~~~~--~-~~~~~~~lPqaiGm~i~a~i~~~~~-~~~--~~~k~~~~n-il~G~~-w~ign 209 (269)
T PF06800_consen 138 KGILALLISTIGYWIYSVIPKAF--H-VSGWSAFLPQAIGMLIGAFIFNLFS-KKP--FFEKKSWKN-ILTGLI-WGIGN 209 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc--C-CChhHhHHHHHHHHHHHHHHHhhcc-ccc--ccccchHHh-hHHHHH-HHHHH
Confidence 46778888888888888888873 3 7887776644433333333333322 221 223333443 445665 35788
Q ss_pred HHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccc
Q 048127 82 RFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRD 125 (251)
Q Consensus 82 ~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~ 125 (251)
.+++.+.+....+.+=.+..+.+++..+-+.+++||+-++|++.
T Consensus 210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~ 253 (269)
T PF06800_consen 210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMI 253 (269)
T ss_pred HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHH
Confidence 89999999999999999999999999999999999998888764
No 58
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.36 E-value=0.0055 Score=43.29 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhccChhhh-hhccchhHHHHHHHHHHhhccccccccccee
Q 048127 74 ILGITANQRFYLLGLYYASPTFA-SAMQNSIPAVTFVMASSLRLEQVNNGRRDGF 127 (251)
Q Consensus 74 ~l~~~~~~~~~~~~l~~~~a~~a-~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~ 127 (251)
+.+....+.++..++++.|.+.+ ++...+..+.+.+.+.+++||++|.+++.|+
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi 90 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGI 90 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhe
Confidence 33455788899999999999999 5567789999999999999999999999875
No 59
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=95.89 E-value=0.0059 Score=44.67 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=50.5
Q ss_pred HHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHHhhhhheee
Q 048127 176 ISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSL 249 (251)
Q Consensus 176 ~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~~t~~~~~l 249 (251)
++||.+.+..|+..++. |+...+++++..+.+ .++.....+... .... ..+.+....+.+++++.+++.+
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP-FKNL-SPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc-ccCC-ChhhhhhhhHhhccceehHHHH
Confidence 47899999999999886 689999999999998 666666654321 1111 1245777888888877776654
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.83 E-value=0.026 Score=48.75 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 70 FFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 70 ~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
++.|++-......+.+.++.+.|++..+=+..+.-++..+++..++|||++++.+.|.. .+.|..+
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l 119 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL 119 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence 34455545567788899999999999998989999999999999999999999999988 8888877
No 61
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.67 E-value=0.012 Score=47.89 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=101.9
Q ss_pred HHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCC
Q 048127 80 NQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSS 158 (251)
Q Consensus 80 ~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~ 158 (251)
..+.---+++|.+...-++.-+++.+.++....++++.|++........ -++.... -...|++...
T Consensus 81 MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~v-----a~w~D~q~~~-------- 147 (309)
T COG5070 81 MIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVV-----ATWGDQQASA-------- 147 (309)
T ss_pred HHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHH-----hccchhhHHH--------
Confidence 3344567899999999999999999999999999999999887766533 2222222 1111211000
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHhHhhhh--hcCchhHHHHHHHHHHHHHHHHHHhheeCC-cccceec-cCchHHH
Q 048127 159 SKSQNWTWGCIFLFGHCISWAGWMVLQAPLLK--KHPAKLTLTSFTCFFRLIQFLAIAAFVETD-INRWKIQ-SGEELFT 234 (251)
Q Consensus 159 ~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 234 (251)
-..+..+.|.+++...++.-|.+....|+..| +.. ....+++..+.+...++.+.+.+|+. +.+...+ ......+
T Consensus 148 ~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~a 226 (309)
T COG5070 148 FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMA 226 (309)
T ss_pred HHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHH
Confidence 01123567999999999999999999887654 232 35557899999999999888887652 2222111 1234556
Q ss_pred HHHHHHHhhhhhe
Q 048127 235 IFYAGIVASGIVL 247 (251)
Q Consensus 235 l~ylgi~~t~~~~ 247 (251)
+..-|+.+-+++|
T Consensus 227 m~ISgl~svgiSy 239 (309)
T COG5070 227 MFISGLCSVGISY 239 (309)
T ss_pred HHHHHHHHhhhhh
Confidence 6777777666665
No 62
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.39 E-value=0.006 Score=45.17 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 72 LAILGITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 72 ~g~l~~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
..+......++++..++++.|.+.|=.+ ....-+.+.+++.++++|+++..+++|+. -++|++.
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~ 100 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVL 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3444456788999999999999988554 56888889999999999999999999998 7778776
No 63
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.0067 Score=43.64 Aligned_cols=63 Identities=19% Similarity=0.059 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhhccChhhh-hhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 73 AILGITANQRFYLLGLYYASPTFA-SAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 73 g~l~~~~~~~~~~~~l~~~~a~~a-~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.+++...++.++..++|+.|.+.| ++-...--+-+.+.++++++|+.+..+++++. -++|++.
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~ 100 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIG 100 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence 344456788899999999999888 55577888899999999999999999999987 6666655
No 64
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.11 E-value=0.061 Score=39.12 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhhccChhhh-hhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 75 LGITANQRFYLLGLYYASPTFA-SAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 75 l~~~~~~~~~~~~l~~~~a~~a-~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.+...++++...++|+.|.+.+ ++.....-+.+.+.+++++||+++..|+.|+. -+.|++.
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3345788899999999999888 44566788888999999999999999999987 6655544
No 65
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.02 E-value=0.01 Score=51.37 Aligned_cols=132 Identities=18% Similarity=0.147 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccHHHHHHHHHHHHHHH-HHHHHhhhccC---C--CCCHHHHHHHHHH
Q 048127 2 KLLMALLALQFCFVGFHIVSRVAL---NIGVSKVAYPVHRNIIALILLS-PFAYVLEKKER---A--PLTFSLLVQFFFL 72 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~~~~k~~~---~~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~---~--~~~~~~~~~~~~~ 72 (251)
.+.+....+.+..+.--++.|..+ ++..+++....+---++.+.++ |+....+.... . ..+.+.. .....
T Consensus 163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 241 (316)
T KOG1441|consen 163 FGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-ILLLN 241 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HHHHH
Confidence 345667778888899999999888 3358999999988889999998 88766443222 1 1222222 23334
Q ss_pred HHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 73 AILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 73 g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.++. .+.+...|..+.+++|-+-++....==.+++..++++++|+++..+..|.. +++|+.+
T Consensus 242 sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~ 304 (316)
T KOG1441|consen 242 SVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFL 304 (316)
T ss_pred HHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHH
Confidence 4444 467888899999999988888877655566677888999999999999998 9999887
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.048 Score=46.79 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 69 FFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 69 ~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.++.|++-.......-|.+..+.|++..+-+..+.-+..++++..++|||++....+|.. +++|..+
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~ 133 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTT 133 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEE
Confidence 456777777788888999999999999999999999999999999999999999999999 9999998
No 67
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=94.93 E-value=0.013 Score=42.73 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 73 AILGITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 73 g~l~~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.+.+....+.++..++++.|.+.+=.+ ..+.-+.+.+++++++||+++..++.|+. -++|++.
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~ 100 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLV 100 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 444556788889999999999988554 66788888999999999999999999988 7777776
No 68
>PRK11431 multidrug efflux system protein; Provisional
Probab=94.89 E-value=0.015 Score=42.07 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhhccChhhh-hhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 74 ILGITANQRFYLLGLYYASPTFA-SAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 74 ~l~~~~~~~~~~~~l~~~~a~~a-~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
+.+...++++...++++.|.+.+ ++-....-+.+.+++.+++||++++.++.|+. -+.|++.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~ 99 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIG 99 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence 44456788899999999999888 44566888889999999999999999999987 7777665
No 69
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=94.35 E-value=0.14 Score=39.08 Aligned_cols=53 Identities=28% Similarity=0.302 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhh------cCchhHHHHHHHHHHHHHHHHHHhheeC
Q 048127 167 GCIFLFGHCISWAGWMVLQAPLLKK------HPAKLTLTSFTCFFRLIQFLAIAAFVET 219 (251)
Q Consensus 167 G~ll~l~aa~~~A~~~v~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (251)
|.++++.|.++.|++.++.|+..++ ..++..+..+....+.+.++|.+...|+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~ 59 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEG 59 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999998776 2358889999999999999999888765
No 70
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.24 E-value=0.99 Score=38.24 Aligned_cols=119 Identities=12% Similarity=0.051 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccc-hhHHHHHHHHHHhhcccccccccc-ee---E-EEEeEEeeC
Q 048127 64 SLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQN-SIPAVTFVMASSLRLEQVNNGRRD-GF---A-KVLGTIAKC 137 (251)
Q Consensus 64 ~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~e~i~~~~~~-g~---~-~~~G~~~~g 137 (251)
+.+..-+..|++ ..+.|..++.+.++...+++-=+.. ..=+.+.+.+.++++|.-+.++++ |. + -++|+.+
T Consensus 43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~l-- 119 (269)
T PF06800_consen 43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVIL-- 119 (269)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHH--
Confidence 555555566666 5689999999999999888876654 566668889999999988877653 32 2 2333333
Q ss_pred CccccccccccccCCccccCC-cCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHH
Q 048127 138 PPLLHQVTHATYLEPEHYMSS-SKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLT 199 (251)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~ 199 (251)
....++ + ++. ++..+..-|....+++.+.|-.|.+..|- .+. |+....
T Consensus 120 ---ts~~~~-----~---~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~ 168 (269)
T PF06800_consen 120 ---TSYQDK-----K---SDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAF 168 (269)
T ss_pred ---hccccc-----c---ccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhH
Confidence 543331 1 111 11234566899999999999999999543 333 455544
No 71
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.01 E-value=0.81 Score=40.27 Aligned_cols=163 Identities=13% Similarity=0.021 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH-HHHHHHHHHH--HHhhhc---cCCCCCHHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNI-IALILLSPFA--YVLEKK---ERAPLTFSLLVQFFFLAILG 76 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~-~a~l~l~~~~--~~~~~~---~~~~~~~~~~~~~~~~g~l~ 76 (251)
.++..++++++||+.++-.|.. ++ -| .+.-+.-.. ++.+ +.|+. ....+. .....+.+.+..-+..|++
T Consensus 8 G~~~~~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~- 82 (345)
T PRK13499 8 GIIWHLIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL- 82 (345)
T ss_pred HHHHHHHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH-
Confidence 4677888999999999999983 33 22 111111001 1111 11100 000011 0112344555545555666
Q ss_pred HHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccc---ccccc----ceeE-EEEeEEeeCCccccc----
Q 048127 77 ITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQV---NNGRR----DGFA-KVLGTIAKCPPLLHQ---- 143 (251)
Q Consensus 77 ~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i---~~~~~----~g~~-~~~G~~~~g~~~~~~---- 143 (251)
....+..++.+.++...+.+--+ ..+.-+...++..++++|-. +..+. .|++ .++|+++ ...
T Consensus 83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l-----~s~Ag~~ 157 (345)
T PRK13499 83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAI-----VGRAGQL 157 (345)
T ss_pred HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHH-----HHHhhhh
Confidence 46889999999999998888666 45777888888888888754 33332 3344 4455555 332
Q ss_pred cccccccCCccccCC-cCCCchHHHHHHHHHHHHHHHHHH
Q 048127 144 VTHATYLEPEHYMSS-SKSQNWTWGCIFLFGHCISWAGWM 182 (251)
Q Consensus 144 ~~~~~~~~~~~~~~~-~~~~~~~~G~ll~l~aa~~~A~~~ 182 (251)
.+ +. ..++ .++.+..-|....+++.+.++.|.
T Consensus 158 k~-----~~--~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 158 KE-----RK--MGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred cc-----cc--cccccccccchHhHHHHHHHHHHHHHHHH
Confidence 11 00 0000 123456789999999999999999
No 72
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.74 E-value=0.2 Score=41.05 Aligned_cols=58 Identities=14% Similarity=-0.046 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 78 TANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 78 ~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
...+.+..+.++|.++..-+....+.++.+.+++.++++|+++..++.|.. .+.|+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 456678889999999999999999999999999999999999999999987 7777653
No 73
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.88 E-value=0.022 Score=47.03 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 048127 1 MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITAN 80 (251)
Q Consensus 1 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 80 (251)
|..++..++-++.||+...++..- |=+|.+=..---..|.++-+.++.+ . .|..+.+.+..-+..|++ ....
T Consensus 1 ~~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-~---~p~~T~~~~iv~~isG~~-Ws~G 72 (288)
T COG4975 1 MMDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-V---SPELTLTIFIVGFISGAF-WSFG 72 (288)
T ss_pred ChhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-e---cCccchhhHHHHHHhhhH-hhhh
Confidence 345677788999999998876432 3355544433334444443433333 1 234455544433444554 4688
Q ss_pred HHHHHHhhhccChhhhhhccc-hhHHHHHHHHHHhhccccccccc-ce---eE-EEEeEEeeCCccccccccccccCCcc
Q 048127 81 QRFYLLGLYYASPTFASAMQN-SIPAVTFVMASSLRLEQVNNGRR-DG---FA-KVLGTIAKCPPLLHQVTHATYLEPEH 154 (251)
Q Consensus 81 ~~~~~~~l~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~e~i~~~~~-~g---~~-~~~G~~~~g~~~~~~~~~~~~~~~~~ 154 (251)
|...+.+.++...+++.=+.+ +.-+-+.+++.+.+||-.+..+. +| ++ -+.|+.+ -...++ +
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l-----Ts~~~~-----~-- 140 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL-----TSKQDR-----N-- 140 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE-----eeeecc-----c--
Confidence 899999999999999887755 66677888888999998777764 33 33 4445554 443221 0
Q ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHH
Q 048127 155 YMSSSKSQNWTWGCIFLFGHCISWAGWMVL 184 (251)
Q Consensus 155 ~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~ 184 (251)
..++++.++.-.|....+.|.++|-.|.+.
T Consensus 141 nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl 170 (288)
T COG4975 141 NKEEENPSNLKKGIVILLISTLGYVGYVVL 170 (288)
T ss_pred cccccChHhhhhheeeeeeeccceeeeEee
Confidence 001112223456777777788888777776
No 74
>PRK13499 rhamnose-proton symporter; Provisional
Probab=90.30 E-value=8.1 Score=34.06 Aligned_cols=117 Identities=12% Similarity=0.119 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHhcCCCccHHHHHHHH---HHHHHHHH-HHHHh--hhccCC----C-CCH
Q 048127 2 KLLMALLALQFCFVGFH-------IVSRVALNIGVSKVAYPVHRNI---IALILLSP-FAYVL--EKKERA----P-LTF 63 (251)
Q Consensus 2 ~~~~~ll~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~~-~~~~~--~~~~~~----~-~~~ 63 (251)
|..+.++++.+..+... +..+.+.+.|.+|.....-.+. ++..+.-. ++.++ ++++.+ + .++
T Consensus 174 KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~ 253 (345)
T PRK13499 174 KGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAK 253 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccc
Confidence 55666777777777666 5666655567888766665555 44444332 22221 112111 1 121
Q ss_pred HH-HHHHH---HHHHHHHHHHHHHHHHhhhccChhhhhh---cc-chhHHHHHHHHHHhhccccc
Q 048127 64 SL-LVQFF---FLAILGITANQRFYLLGLYYASPTFASA---MQ-NSIPAVTFVMASSLRLEQVN 120 (251)
Q Consensus 64 ~~-~~~~~---~~g~l~~~~~~~~~~~~l~~~~a~~a~~---l~-~~~Pv~~~ll~~l~~~e~i~ 120 (251)
+. ++++. ..|++ ....+.++..+-+..+...+.. +. .+.-++..+-+. ++||+=+
T Consensus 254 ~~~~~n~l~~~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~ 316 (345)
T PRK13499 254 PLLITNVLLSALAGVM-WYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKG 316 (345)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccC
Confidence 11 23322 33333 3466677777777765544444 44 444455555555 6899866
No 75
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.04 E-value=0.47 Score=39.18 Aligned_cols=127 Identities=12% Similarity=0.000 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhcc-C----CCCCHHHHHHHHHHHHHH
Q 048127 5 MALLALQFCFVGFHIVS---RVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKE-R----APLTFSLLVQFFFLAILG 76 (251)
Q Consensus 5 ~~ll~~~~~wg~~~~~~---k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~----~~~~~~~~~~~~~~g~l~ 76 (251)
+++++..-.-|...... |...+ -+-..+.+.-.+.+.+.+..-.++.+... . .+.+ ..+..+...++-+
T Consensus 175 lLL~lSL~mDGlTg~~Qdrira~yq--~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP-~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 175 LLLILSLAMDGLTGSIQDRIRASYQ--RTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHP-YVFWDLTLLAIAS 251 (337)
T ss_pred HHHHHHHHhcccchhHHHHHHHhhc--cCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhcc-HHHHHHHHHHHHH
Confidence 34455555555555543 22222 23445555666666665544333322110 0 0112 2344556667665
Q ss_pred HHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 77 ITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 77 ~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
++.|.+.|.-+.+-+|-..+++..+--+++++.+.++++.+++.+||+|.. .+.|...
T Consensus 252 -~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 252 -CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred -HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 478889999999999999999999999999999999999999999999976 6665555
No 76
>COG2510 Predicted membrane protein [Function unknown]
Probab=87.89 E-value=3.3 Score=31.01 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHHhhhhh
Q 048127 168 CIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIV 246 (251)
Q Consensus 168 ~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~~t~~~ 246 (251)
..+.+++++++++..++.|--.++. ||...++...+...+.+........+....-.. ..+.|.-+..-|+ +++++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSGl-a~gls 80 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSGL-AGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHHH-HHHHH
Confidence 5678999999999999999888876 677878888777777777666655321000011 2355666666663 34444
No 77
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=87.53 E-value=2.8 Score=37.11 Aligned_cols=125 Identities=12% Similarity=0.120 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHHHHHHHHHhhhccCC--CCCH-HHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNI---GVSKVAYPVHRNIIALILLSPFAYVLEKKERA--PLTF-SLLVQFFFLAILG 76 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~--~~~~-~~~~~~~~~g~l~ 76 (251)
+.+..+.+++.+|..-+..|.=.++ .+|.-.+-.+--++..+++.|.......-.++ .++. .....+.+.++++
T Consensus 248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~lig 327 (416)
T KOG2765|consen 248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIG 327 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHH
Confidence 4567788999999999998776543 26666666666677777777665553321111 1222 2233356778999
Q ss_pred HHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE
Q 048127 77 ITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA 128 (251)
Q Consensus 77 ~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~ 128 (251)
+...-++|..|.-.|++-.+++= .-+.|+ .++...++.++++++..++|..
T Consensus 328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~S~~~iiGsi 379 (416)
T KOG2765|consen 328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHPSALYIIGSI 379 (416)
T ss_pred HHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999988884 446775 5667788888999999998854
No 78
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.81 E-value=3.5 Score=35.62 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHHHHhhhc-----cCC-CCCHHHHHHHHHHHHHH
Q 048127 4 LMALLALQFCFVGFHIVSRVALNI-GVSKVAYPVHRNIIALILLSPFAYVLEKK-----ERA-PLTFSLLVQFFFLAILG 76 (251)
Q Consensus 4 ~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-----~~~-~~~~~~~~~~~~~g~l~ 76 (251)
|..+....+.-....+..|...+. +.+-..+.++-.+++.+.+....++.+.. +.+ ..+...+.....-++.+
T Consensus 159 Y~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~g 238 (314)
T KOG1444|consen 159 YSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMG 238 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHH
Confidence 445555556666666677777654 36677788899999888888777654421 111 12233445556667776
Q ss_pred HHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 77 ITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 77 ~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
. .-.++.++..+.+++..-++.....-..+.+...++++++.++....|+. +++|.+.
T Consensus 239 f-~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~ 297 (314)
T KOG1444|consen 239 F-GISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVL 297 (314)
T ss_pred H-HHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhH
Confidence 4 56678889999999888888775566666666677888999999999998 9988887
No 79
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=85.08 E-value=4 Score=34.66 Aligned_cols=167 Identities=11% Similarity=0.006 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ChhhhhhccchhHHHHHHHH
Q 048127 33 AYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYA-SPTFASAMQNSIPAVTFVMA 111 (251)
Q Consensus 33 ~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~-~a~~a~~l~~~~Pv~~~ll~ 111 (251)
.+++.+|++-+.-=+++.-.... .+++.+.|++. .....+ ...+.+-.+++++- +...=-++-+-.++.++.++
T Consensus 35 LITFaqFlFia~eGlif~skf~~-~k~kiplk~Y~--i~V~mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g 109 (330)
T KOG1583|consen 35 LITFAQFLFIATEGLIFTSKFFT-VKPKIPLKDYA--ITVAMF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG 109 (330)
T ss_pred ehHHHHHHHHHHhceeeeccccc-cCCCCchhhhh--eehhee--eeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence 55666776655543333211111 13566766653 223333 24556667888873 44444556677899999999
Q ss_pred HHhhcccccccccceeE-EEEeEEeeCCccccc--cccccccCCccccC---CcCCCchHHHHHHHHHHHHHHHHHHHHh
Q 048127 112 SSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQ--VTHATYLEPEHYMS---SSKSQNWTWGCIFLFGHCISWAGWMVLQ 185 (251)
Q Consensus 112 ~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~G~ll~l~aa~~~A~~~v~~ 185 (251)
+++.++|.+.+|..+.+ --+|+++ -.. +.+... +.+..+. .+....|..|..+...+-+.-|...+.+
T Consensus 110 ~il~~k~Ys~~Qy~Sv~~iTiGiiI-----cTl~s~~d~~~-~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyq 183 (330)
T KOG1583|consen 110 WILLGKRYSLRQYSSVLMITIGIII-----CTLFSSKDGRS-KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQ 183 (330)
T ss_pred HHhccceeehhhhhhHHhhhhhhee-----EEeecCcchhh-hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 7777777 211 000000 0000111 1122357889999889999999999888
Q ss_pred HhhhhhcC-chhHHHHHHHHHHHHHH
Q 048127 186 APLLKKHP-AKLTLTSFTCFFRLIQF 210 (251)
Q Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~~l~~ 210 (251)
.+.-||+. ++....++.=..+-..+
T Consensus 184 E~~Y~kyGKh~~EalFytH~LsLP~F 209 (330)
T KOG1583|consen 184 ETTYQKYGKHWKEALFYTHFLSLPLF 209 (330)
T ss_pred HHHHHHhcCChHHHHHHHHHhccchH
Confidence 87767764 35666666655544433
No 80
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.97 E-value=1.4 Score=33.92 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048127 9 ALQFCFVGFHIV-SRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLG 87 (251)
Q Consensus 9 ~~~~~wg~~~~~-~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 87 (251)
.+..+-.....+ .|..... =+|....+.-+..+..++..+....+++......++..++.+.-|.+|. .+-......
T Consensus 12 ~aG~~l~~Q~~iN~qL~~~~-~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa-~~vt~s~~l 89 (150)
T COG3238 12 LAGALLPLQAAINGRLARYL-GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGA-IFVTSSILL 89 (150)
T ss_pred HHhhhhhhHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhh-hhhhhhHHh
Confidence 333443333333 3444333 2699999999999999998888874333221222222233455567764 333333344
Q ss_pred hhccChhhh-hhccchhHHHHHHHHHH-hh---cccccccccceeE-EEEeEE
Q 048127 88 LYYASPTFA-SAMQNSIPAVTFVMASS-LR---LEQVNNGRRDGFA-KVLGTI 134 (251)
Q Consensus 88 l~~~~a~~a-~~l~~~~Pv~~~ll~~l-~~---~e~i~~~~~~g~~-~~~G~~ 134 (251)
.....++.. .+...-.-+...+++.+ .+ +++++..++.|++ .++|+.
T Consensus 90 ~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil 142 (150)
T COG3238 90 APRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGIL 142 (150)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHH
Confidence 444444443 33445566666666655 22 4567888888877 666633
No 81
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=82.06 E-value=26 Score=30.31 Aligned_cols=129 Identities=9% Similarity=0.066 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHHHHhhhccCC-----CCCHHHHHHHHHHHHHHH
Q 048127 4 LMALLALQFCFVGFHIVSRVALN-IGVSKVAYPVHRNIIALILLSPFAYVLEKKERA-----PLTFSLLVQFFFLAILGI 77 (251)
Q Consensus 4 ~~~ll~~~~~wg~~~~~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~~ 77 (251)
+.++....++-|......+...+ .++++..+.+.-.++.++.=..-... ....++ +..++.++-++.....|.
T Consensus 174 ~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~-qg~~~~av~F~~~hp~~~~Di~l~s~~ga 252 (327)
T KOG1581|consen 174 ILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLIL-QGHLLPAVSFIKEHPDVAFDILLYSTCGA 252 (327)
T ss_pred HHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHcChhHHHHHHHHHHhhh
Confidence 45555566666766666555443 35888888887777776664443221 111111 112233334555566653
Q ss_pred HHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEE
Q 048127 78 TANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTI 134 (251)
Q Consensus 78 ~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~ 134 (251)
..|.+.++-++.=.+-.-+.+..+-=++.++++.+.++.+++..+|.|.. -+.|..
T Consensus 253 -vGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~ 309 (327)
T KOG1581|consen 253 -VGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIF 309 (327)
T ss_pred -hhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHH
Confidence 67777777777766666677778888999999999999999999999988 444433
No 82
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=79.13 E-value=16 Score=27.58 Aligned_cols=52 Identities=13% Similarity=-0.010 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeC
Q 048127 168 CIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVET 219 (251)
Q Consensus 168 ~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (251)
.++.+.+....++....+.|..++..||..-++..+..+++.+..+..+.++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~ 54 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677888899999999998888887668998999999999999888877654
No 83
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=71.89 E-value=58 Score=27.18 Aligned_cols=125 Identities=14% Similarity=-0.022 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHH-HhhhccCCCC-CHHHHHHHHHHHHHHHHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAY-VLEKKERAPL-TFSLLVQFFFLAILGITAN 80 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~g~l~~~~~ 80 (251)
+.++.+.++++-|...+.....++++-.|...--.++-+-++++..+.. .++..+..+. -.+.+-...+.-++.....
T Consensus 115 G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~g 194 (244)
T PF04142_consen 115 GLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIG 194 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHh
Confidence 3567777889999999999777766334444444444444333333332 3222211110 0111111111111111233
Q ss_pred HHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhccccccccccee
Q 048127 81 QRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGF 127 (251)
Q Consensus 81 ~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~ 127 (251)
=...-.-+||.+.-.=+.-....-+.+.+++..+++.+++....+|.
T Consensus 195 Gllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~ 241 (244)
T PF04142_consen 195 GLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA 241 (244)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence 34455678888877777778888999999999999999998877664
No 84
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.70 E-value=39 Score=26.03 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeC
Q 048127 166 WGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVET 219 (251)
Q Consensus 166 ~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (251)
+..+..+.+..+.....-++.|..|...+|..-.++++..|++++..+.+..++
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~ 58 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG 58 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556778888999999999988887777668998999999999999888877543
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=68.82 E-value=1.8 Score=36.09 Aligned_cols=92 Identities=9% Similarity=-0.008 Sum_probs=55.4
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHH
Q 048127 29 VSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTF 108 (251)
Q Consensus 29 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ 108 (251)
.+...--..-+.++++.+.. ++..++.++..+.+ ...|++ ....+.+++.+-+....+.+=-+..+.-++..
T Consensus 179 ~saiLPqAiGMv~~ali~~~------~~~~~~~~K~t~~n-ii~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisT 250 (288)
T COG4975 179 LSAILPQAIGMVIGALILGF------FKMEKRFNKYTWLN-IIPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIIST 250 (288)
T ss_pred hhhhhHHHHHHHHHHHHHhh------cccccchHHHHHHH-HhhHHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeee
Confidence 44444444445555554332 12223345555554 445666 35677888888886665555455666677777
Q ss_pred HHHHHhhcccccccccceeE
Q 048127 109 VMASSLRLEQVNNGRRDGFA 128 (251)
Q Consensus 109 ll~~l~~~e~i~~~~~~g~~ 128 (251)
+-+.+++|||-+++++....
T Consensus 251 iGGIl~L~ekKtkkEm~~v~ 270 (288)
T COG4975 251 IGGILFLGEKKTKKEMVYVI 270 (288)
T ss_pred cceEEEEeccCchhhhhhhh
Confidence 77788899998888876543
No 86
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=58.20 E-value=62 Score=28.15 Aligned_cols=132 Identities=14% Similarity=0.002 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHHHHhhhccC-------CCCCH----HHHH
Q 048127 3 LLMALLALQFCFVGFHIVSRVALNIG----VSKVAYPVHRNIIALILLSPFAYVLEKKER-------APLTF----SLLV 67 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-------~~~~~----~~~~ 67 (251)
++.....++.+-|.-|.+.+..++++ =+|....+.---...+.++|.....+...+ +..+. +...
T Consensus 165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g 244 (349)
T KOG1443|consen 165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIG 244 (349)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHH
Confidence 34556678888889999998888762 236666555555555666666555442211 11111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 68 QFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 68 ~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.+...|.+.. .--...+.=+..|+.-..++..-.-=+.+.+++..+.+|+++...|.|.. +..|+..
T Consensus 245 ~i~l~g~laF-~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~ 312 (349)
T KOG1443|consen 245 LISLGGLLAF-LLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILL 312 (349)
T ss_pred HHHHHHHHHH-HHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHH
Confidence 2223333321 12222333344455444444444455678888999999999999999998 9988887
No 87
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=55.75 E-value=1e+02 Score=24.82 Aligned_cols=30 Identities=20% Similarity=-0.016 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhhhhc
Q 048127 163 NWTWGCIFLFGHCISWAGWMVLQAPLLKKH 192 (251)
Q Consensus 163 ~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~ 192 (251)
+...|....+.++++-+...+++++..|+.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 446777778888888888888888865554
No 88
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=54.81 E-value=7.5 Score=32.07 Aligned_cols=106 Identities=13% Similarity=0.045 Sum_probs=74.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhhccCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhH
Q 048127 29 VSKVAYPVHRNIIALILLSPFAYVLEKKERA----PLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIP 104 (251)
Q Consensus 29 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~P 104 (251)
..-..-.++...++..+++.+....+.+... .++...+...+.-|+-. ..-.++.-|.++-++.+.-+....+.-
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGALNK 261 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGALNK 261 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHHhhh
Confidence 4456678899999999999888776543211 23434433444445443 345566678888888888888888877
Q ss_pred HHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 105 AVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 105 v~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
.-.++-+.++++|+.++..+.++. |++..++
T Consensus 262 lp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 262 LPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred ChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 777788888999999988888876 6554444
No 89
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=48.77 E-value=28 Score=25.13 Aligned_cols=111 Identities=20% Similarity=0.119 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127 5 MALLALQFCFVGFHIVSRVALNIGVSKVAY--PVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR 82 (251)
Q Consensus 5 ~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~--~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 82 (251)
..++.+...||...++.|..... .+..-- ..+|.. ..+.+.. .+.++ +..--.++. ....
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~g-~~~v~~~~~k~~~~-----------lqe~~tl-~l~w~----Y~iPFllNq-cgSa 67 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSLG-WDKVKSSSRKIMIA-----------LQEMKTL-FLNWE----YLIPFLLNQ-CGSA 67 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHhh-HhhccCchHHHHHH-----------HHHHHHH-HHhHH----HHHHHHHHH-hhHH
Confidence 36788999999999999987542 221110 111110 0111100 01111 222333443 4667
Q ss_pred HHHHhhhccChhhhhhccc-hhHHHHHHHHHHhhcccccccccceeE-EEEeE
Q 048127 83 FYLLGLYYASPTFASAMQN-SIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGT 133 (251)
Q Consensus 83 ~~~~~l~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~ 133 (251)
+||.-++.++-+.+.=+.+ +.-.++...+..+..|....+.++|.. -.+|+
T Consensus 68 ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi 120 (125)
T KOG4831|consen 68 LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGI 120 (125)
T ss_pred HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhh
Confidence 8888899988887776654 577778888877765555555555554 44443
No 90
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=38.34 E-value=19 Score=30.77 Aligned_cols=107 Identities=15% Similarity=0.031 Sum_probs=73.6
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhhcc--C---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccch
Q 048127 28 GVSKVAYPVHRNIIALILLSPFAYVLEKKE--R---APLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNS 102 (251)
Q Consensus 28 ~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~ 102 (251)
+-+...++++.+.++...++........-- + .+.+.+.....++.+..+. +.+.+...=++.-.|..++.+...
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gy-lG~~~VLalI~~fGA~~aatvTTa 295 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGY-LGIVFVLALIKLFGALIAATVTTA 295 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhH-hhHHHHHHHHHHhchhHHHHHHHh
Confidence 456778888999998888777665533211 1 1345555554455555543 444445555555677788888888
Q ss_pred hHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 103 IPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 103 ~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
---.|++++++++.++.+.....+.. -+.|+.+
T Consensus 296 RKavTi~lSfllFsKPfT~qy~~~gllv~lgI~L 329 (367)
T KOG1582|consen 296 RKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYL 329 (367)
T ss_pred HhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHh
Confidence 88999999999999999988877665 7777777
No 91
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=34.26 E-value=58 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhhhhc
Q 048127 163 NWTWGCIFLFGHCISWAGWMVLQAPLLKKH 192 (251)
Q Consensus 163 ~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~ 192 (251)
++..|..+.+.++++.+....++|+-.+|.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~ 33 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRL 33 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999865543
No 92
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=29.31 E-value=10 Score=32.29 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccc--hhHHHHHHHHHHhhcccccccccceeE-EEEeEEee
Q 048127 60 PLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQN--SIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAK 136 (251)
Q Consensus 60 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~--~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~ 136 (251)
..++|. +..++.+- ...+.+..-++.|.+=-.--+.-. +.|++ +.+.++.+.|.+.....+.. -.+|.++
T Consensus 103 ~iP~rt---Y~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVm--iggifIqGkRY~v~d~~aA~lm~lGli~- 175 (367)
T KOG1582|consen 103 VIPWRT---YVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVM--IGGIFIQGKRYGVHDYIAAMLMSLGLIW- 175 (367)
T ss_pred ecchhH---hhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhh--heeeeeccccccHHHHHHHHHHHHHHHh-
Confidence 356654 33444442 245555566666665322222222 45644 56778888888887776655 5556666
Q ss_pred CCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCc-hhHHHHHHHHHHHHHHHHHHh
Q 048127 137 CPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPA-KLTLTSFTCFFRLIQFLAIAA 215 (251)
Q Consensus 137 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 215 (251)
...-|++ .+++. ...|....-+|-++=|+-...|.+..|.++. ...+.+++..+|.+..+....
T Consensus 176 ----FTLADs~----------~sPNF-~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mv 240 (367)
T KOG1582|consen 176 ----FTLADSQ----------TSPNF-NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMV 240 (367)
T ss_pred ----hhhcccc----------cCCCc-ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHH
Confidence 4433311 12222 3578887777788888888888888888763 566778888888888877766
Q ss_pred heeC
Q 048127 216 FVET 219 (251)
Q Consensus 216 ~~~~ 219 (251)
..++
T Consensus 241 lTge 244 (367)
T KOG1582|consen 241 LTGE 244 (367)
T ss_pred hccc
Confidence 6544
No 93
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=27.81 E-value=88 Score=17.80 Aligned_cols=19 Identities=16% Similarity=-0.022 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048127 166 WGCIFLFGHCISWAGWMVL 184 (251)
Q Consensus 166 ~G~ll~l~aa~~~A~~~v~ 184 (251)
+=.++-++.+.+||+|++.
T Consensus 6 liVl~Pil~A~~Wa~fNIg 24 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIG 24 (36)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 4456778889999999986
No 94
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=27.01 E-value=21 Score=30.50 Aligned_cols=10 Identities=10% Similarity=0.577 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 048127 232 LFTIFYAGIV 241 (251)
Q Consensus 232 ~~~l~ylgi~ 241 (251)
.+.++++++.
T Consensus 171 ~WL~LFlaiL 180 (381)
T PF05297_consen 171 YWLLLFLAIL 180 (381)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4455666654
No 95
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.59 E-value=4.4e+02 Score=22.79 Aligned_cols=131 Identities=14% Similarity=0.104 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHHHHhhhcc----CCCC-CHHHHHHHHHHHHHHH
Q 048127 4 LMALLALQFCFVGFHIVSRVALNI-GVSKVAYPVHRNIIALILLSPFAYVLEKKE----RAPL-TFSLLVQFFFLAILGI 77 (251)
Q Consensus 4 ~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~----~~~~-~~~~~~~~~~~g~l~~ 77 (251)
.+.-+.+++.-+.+.+-.|..+.. |=..+.+.++-...+.++++|.....+.-+ .+.. ..+-|..+...|++|.
T Consensus 187 vifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF 266 (347)
T KOG1442|consen 187 VIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGF 266 (347)
T ss_pred hHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHH
Confidence 455566777778888888865543 123457788888999999999987754322 1223 2333444445566654
Q ss_pred HHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 78 TANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 78 ~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
..++ --.+-+|-|+|-+=.+=.+.-..--.+++..+.+|.-+...|.+-. -+.|...
T Consensus 267 ~mgy-vTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~ 324 (347)
T KOG1442|consen 267 AMGY-VTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLA 324 (347)
T ss_pred Hhhh-eeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHH
Confidence 3332 1223344455433322222333445567888899998888888876 5555554
No 96
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=25.00 E-value=3.2e+02 Score=23.74 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCCccHHHHHHHHHHHH----HHHHHHHHhhhcc---CCCCCHHHHHHHH----
Q 048127 3 LLMALLALQFCFVGFHIVS-RVALNIGVSKVAYPVHRNIIALI----LLSPFAYVLEKKE---RAPLTFSLLVQFF---- 70 (251)
Q Consensus 3 ~~~~ll~~~~~wg~~~~~~-k~~~~~~~~p~~~~~~R~~~a~l----~l~~~~~~~~~~~---~~~~~~~~~~~~~---- 70 (251)
+.++.+.+.++-+.-++.= |.....+++|.+.+.+.-.++.. ++.|+.+....+. .++-.+.|+...+
T Consensus 177 GdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~ 256 (372)
T KOG3912|consen 177 GDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQ 256 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhc
Confidence 4567888999999999884 55556679999999998777743 3344443321111 1222233333211
Q ss_pred -----HHHHHHHHHHHHHH-HHhh---hccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 71 -----FLAILGITANQRFY-LLGL---YYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 71 -----~~g~l~~~~~~~~~-~~~l---~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
...+.+......++ +.|+ ++.++++=.++=.+--.+.=+++.....|+....++.|.+ -..|.++
T Consensus 257 e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~l 331 (372)
T KOG3912|consen 257 ESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIIL 331 (372)
T ss_pred CCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333332222222 2333 4457777777766666666667777889999999988876 6666665
No 97
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=23.26 E-value=92 Score=22.45 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=29.2
Q ss_pred HhhhccChhhhhhccch-hHHHHHHHHHHhhcccccccccceeEEEEeE
Q 048127 86 LGLYYASPTFASAMQNS-IPAVTFVMASSLRLEQVNNGRRDGFAKVLGT 133 (251)
Q Consensus 86 ~~l~~~~a~~a~~l~~~-~Pv~~~ll~~l~~~e~i~~~~~~g~~~~~G~ 133 (251)
.|.+.-++++--+++-. +-..-+.++.+++||++++.+..|..+++|+
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~a 102 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGA 102 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 44444455555555432 2222345677899999999998876544443
No 98
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=21.57 E-value=1.3e+02 Score=17.06 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048127 166 WGCIFLFGHCISWAGWMVL 184 (251)
Q Consensus 166 ~G~ll~l~aa~~~A~~~v~ 184 (251)
+=.+.-++.+.+||+|++.
T Consensus 6 liVl~Pil~A~gWa~fNIg 24 (36)
T PF06298_consen 6 LIVLLPILPAAGWALFNIG 24 (36)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3456677889999999987
Done!