Query 048127
Match_columns 251
No_of_seqs 137 out of 1264
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 11:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.1 3.1E-06 1.1E-10 61.0 4.9 65 71-135 34-100 (110)
2 2i68_A Protein EMRE; transmemb 97.9 1.3E-06 4.3E-11 65.4 0.3 65 71-135 34-100 (137)
3 2l2t_A Receptor tyrosine-prote 19.3 1.3E+02 0.0044 17.1 3.2 11 44-54 26-36 (44)
4 2ks1_B Epidermal growth factor 18.6 1.3E+02 0.0044 17.1 3.1 12 43-54 26-37 (44)
5 2hac_A T-cell surface glycopro 12.5 1.2E+02 0.0042 16.0 1.7 17 106-122 15-31 (33)
6 2b2h_A AMT-1, ammonium transpo 9.2 8.6E+02 0.029 20.7 8.5 26 191-216 294-319 (399)
7 3b9w_A Ammonium transporter fa 7.4 1E+03 0.036 20.3 10.0 26 191-216 289-314 (407)
8 2k9p_A Pheromone alpha factor 5.2 6.4E+02 0.022 16.1 3.2 21 34-54 24-44 (80)
9 1gl4_A Nidogen-1, entactin; im 4.0 2.8E+02 0.0097 22.6 0.9 39 85-124 88-126 (285)
10 1q90_R Cytochrome B6-F complex 3.1 8.8E+02 0.03 13.9 3.5 19 60-78 8-26 (49)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.11 E-value=3.1e-06 Score=60.96 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 71 FLAILGITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 71 ~~g~l~~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
..+.++...++.++..++++.|.+.+..+ ..+.|+.+.+++++++||+++.+++.|+. -+.|+..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~ 100 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLI 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 45556667888999999999999999887 89999999999999999999999999998 7778776
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.95 E-value=1.3e-06 Score=65.38 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127 71 FLAILGITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA 135 (251)
Q Consensus 71 ~~g~l~~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~ 135 (251)
..+++...+++.++..++++.+++.+..+ .++.|++++++++++++|+++..+++|+. -++|+.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~l 100 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLI 100 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 45666677899999999999999999888 89999999999999999999999999998 8888877
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=19.31 E-value=1.3e+02 Score=17.14 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=4.2
Q ss_pred HHHHHHHHHhh
Q 048127 44 ILLSPFAYVLE 54 (251)
Q Consensus 44 l~l~~~~~~~~ 54 (251)
+.+..+++.++
T Consensus 26 i~~~~~~~~RR 36 (44)
T 2l2t_A 26 VGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33333333433
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=18.61 E-value=1.3e+02 Score=17.11 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhh
Q 048127 43 LILLSPFAYVLE 54 (251)
Q Consensus 43 ~l~l~~~~~~~~ 54 (251)
.+.+..+++.++
T Consensus 26 ii~~~~~~~~RR 37 (44)
T 2ks1_B 26 VVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh
Confidence 333333443433
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=12.46 E-value=1.2e+02 Score=16.02 Aligned_cols=17 Identities=0% Similarity=0.047 Sum_probs=9.8
Q ss_pred HHHHHHHHhhccccccc
Q 048127 106 VTFVMASSLRLEQVNNG 122 (251)
Q Consensus 106 ~~~ll~~l~~~e~i~~~ 122 (251)
+.+++..++.|||.++.
T Consensus 15 Ygii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 15 YGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34455556667776543
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=9.16 E-value=8.6e+02 Score=20.73 Aligned_cols=26 Identities=15% Similarity=0.024 Sum_probs=13.8
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHhh
Q 048127 191 KHPAKLTLTSFTCFFRLIQFLAIAAF 216 (251)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (251)
|++|+..........|..-.+...++
T Consensus 294 ~iDD~l~a~~vHgv~Gi~G~l~~glf 319 (399)
T 2b2h_A 294 KIDESLDAWAIHGIGGLWGSVAVGIL 319 (399)
T ss_dssp TCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeccchhhHHHHHHHHHH
Confidence 45676665555555555544444443
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=7.38 E-value=1e+03 Score=20.29 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=12.5
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHhh
Q 048127 191 KHPAKLTLTSFTCFFRLIQFLAIAAF 216 (251)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (251)
|++|+..........|.+..+...++
T Consensus 289 ~iDD~l~a~~vHgv~Gi~G~l~~glf 314 (407)
T 3b9w_A 289 KTIDTCGVHNLHGLPGLLGGFSAILI 314 (407)
T ss_dssp CCCCTTCHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCeecchHHHHHHHHHHHHH
Confidence 45666655544444444444443333
No 8
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=5.22 E-value=6.4e+02 Score=16.13 Aligned_cols=21 Identities=14% Similarity=-0.181 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 048127 34 YPVHRNIIALILLSPFAYVLE 54 (251)
Q Consensus 34 ~~~~R~~~a~l~l~~~~~~~~ 54 (251)
.-..|...+.+.++.+....+
T Consensus 24 ~~G~~iGAs~llliil~lltk 44 (80)
T 2k9p_A 24 LFGVRSGAAALTLIVVWITSR 44 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345677776666665555543
No 9
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=3.97 E-value=2.8e+02 Score=22.61 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=31.1
Q ss_pred HHhhhccChhhhhhccchhHHHHHHHHHHhhccccccccc
Q 048127 85 LLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRR 124 (251)
Q Consensus 85 ~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~ 124 (251)
+.++..+|+..+..+..+.|+. ..++|++-+|..+...-
T Consensus 88 ytais~Ip~~~G~~l~~L~~ig-~~igWlfA~e~~~~~NG 126 (285)
T 1gl4_A 88 YTAISTIPETVGYSLLPLAPIG-GIIGWMFAVEQDGFKNG 126 (285)
T ss_dssp EEEEESCCHHHHGGGTTCTHHH-HHHHHHTCEECTTCCCH
T ss_pred EEEeccCChhhchhhhhhhhhc-cceeeeeecccCccccc
Confidence 3567788999999999999965 67899999987765543
No 10
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=3.06 E-value=8.8e+02 Score=13.86 Aligned_cols=19 Identities=5% Similarity=0.165 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 048127 60 PLTFSLLVQFFFLAILGIT 78 (251)
Q Consensus 60 ~~~~~~~~~~~~~g~l~~~ 78 (251)
...||.+.+.+..|..+..
T Consensus 8 dm~RRqfln~l~~G~~a~~ 26 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLP 26 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 3456666666666666543
Done!