Query 048127
Match_columns 251
No_of_seqs 137 out of 1264
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 11:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048127.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048127hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 19.9 44 0.0032 15.2 2.8 20 165-184 2-21 (27)
2 d1gl4a1 d.22.1.2 (A:399-631) D 6.8 69 0.005 23.6 0.9 38 86-124 43-80 (233)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 4.1 7.6E+02 0.055 18.7 9.9 41 174-216 290-330 (383)
4 d1q90a3 f.23.23.1 (A:248-292) 1.9 6.1E+02 0.044 12.9 3.6 27 165-191 5-31 (45)
5 d1v54k_ f.23.5.1 (K:) Mitochon 1.9 6.4E+02 0.046 13.1 3.5 22 163-184 5-27 (49)
6 d1q90r_ f.23.12.1 (R:) ISP sub 1.7 6.1E+02 0.045 12.5 4.3 16 61-76 7-22 (39)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 1.7 5.9E+02 0.043 12.2 2.8 19 164-182 17-35 (37)
8 d1q79a1 a.160.1.1 (A:215-364) 1.5 3E+02 0.022 18.3 0.1 26 166-194 23-48 (150)
9 d1vf5c3 f.23.23.1 (C:250-286) 1.4 7.1E+02 0.052 12.1 3.9 22 36-57 8-29 (37)
10 d2q66a1 a.160.1.1 (A:202-351) 1.4 4E+02 0.029 17.6 0.5 37 166-205 23-59 (150)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.91 E-value=44 Score=15.20 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048127 165 TWGCIFLFGHCISWAGWMVL 184 (251)
Q Consensus 165 ~~G~ll~l~aa~~~A~~~v~ 184 (251)
.+|.+.+-++.++||.|.-+
T Consensus 2 vlgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeehHHHHHHHHHHHHHHh
Confidence 36888888899999987633
No 2
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.76 E-value=69 Score=23.56 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=31.0
Q ss_pred HhhhccChhhhhhccchhHHHHHHHHHHhhccccccccc
Q 048127 86 LGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRR 124 (251)
Q Consensus 86 ~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~ 124 (251)
.+++..|+..+..+..+.|+.. .++|+|-||..+...-
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~NG 80 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFKNG 80 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCCCH
T ss_pred EEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCccCc
Confidence 4677889999999999999866 5799999998776653
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=4.07 E-value=7.6e+02 Score=18.74 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhh
Q 048127 174 HCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAF 216 (251)
Q Consensus 174 aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (251)
+.+++-.+..+.+| . |.+||..........|..-.+...++
T Consensus 290 g~i~~~~~~~l~~~-~-~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 290 GLAGLWGVTMLKRL-L-RVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHHHHHHH-H-CSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhh-c-ccccccceEeehhhhHHHHHHHHHHh
Confidence 34444444444222 2 45677776666666666666555554
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.88 E-value=6.1e+02 Score=12.90 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 048127 165 TWGCIFLFGHCISWAGWMVLQAPLLKK 191 (251)
Q Consensus 165 ~~G~ll~l~aa~~~A~~~v~~~~~~~~ 191 (251)
..|.+..+.+.+.--+..++-||..+|
T Consensus 5 v~gll~F~~~v~laQi~LVLKKKQfEK 31 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLKKKQFEK 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665555544
No 5
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.85 E-value=6.4e+02 Score=13.06 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=13.3
Q ss_pred chHHHHHHHH-HHHHHHHHHHHH
Q 048127 163 NWTWGCIFLF-GHCISWAGWMVL 184 (251)
Q Consensus 163 ~~~~G~ll~l-~aa~~~A~~~v~ 184 (251)
+.-+|+...+ .+++|-|++...
T Consensus 5 HdKYGn~vL~~Ga~fc~avW~yv 27 (49)
T d1v54k_ 5 HDKYGNAVLASGATFCVAVWVYM 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcEEEecccchhhhhhhhe
Confidence 3446764444 466777777665
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.74 E-value=6.1e+02 Score=12.51 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHH
Q 048127 61 LTFSLLVQFFFLAILG 76 (251)
Q Consensus 61 ~~~~~~~~~~~~g~l~ 76 (251)
..||...+++..|...
T Consensus 7 MgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 7 MNKRNIMNLILAGGAG 22 (39)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccc
Confidence 4456667777776554
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.70 E-value=5.9e+02 Score=12.18 Aligned_cols=19 Identities=5% Similarity=0.321 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 048127 164 WTWGCIFLFGHCISWAGWM 182 (251)
Q Consensus 164 ~~~G~ll~l~aa~~~A~~~ 182 (251)
.-+|.++.+.-++.++-|.
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578888877777776654
No 8
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.52 E-value=3e+02 Score=18.28 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhcCc
Q 048127 166 WGCIFLFGHCISWAGWMVLQAPLLKKHPA 194 (251)
Q Consensus 166 ~G~ll~l~aa~~~A~~~v~~~~~~~~~~~ 194 (251)
+|+.+..++.+.||+. ..+..+.+|+
T Consensus 23 Ysn~~GflGGI~waIL---vArvCql~Pn 48 (150)
T d1q79a1 23 YSNILGFLGGVSWAML---VARTCQLYPN 48 (150)
T ss_dssp BCTTTTSBCHHHHHHH---HHHHHHHSTT
T ss_pred ccccccccHHHHHHHH---HHHHHHHCCC
Confidence 3444445556666653 3344555654
No 9
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.42 E-value=7.1e+02 Score=12.06 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 048127 36 VHRNIIALILLSPFAYVLEKKE 57 (251)
Q Consensus 36 ~~R~~~a~l~l~~~~~~~~~~~ 57 (251)
.+-.+++++.+.=+.+..++|+
T Consensus 8 gl~~F~~~v~laQi~lVlKKKQ 29 (37)
T d1vf5c3 8 WMIAFICLVMLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444434444
No 10
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.41 E-value=4e+02 Score=17.63 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHH
Q 048127 166 WGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFF 205 (251)
Q Consensus 166 ~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~ 205 (251)
+|+.+..++.+.||+ +..+..+.+|+...-....-++
T Consensus 23 Ysn~~GylGGI~waI---LvArvCql~p~a~~~~ll~~FF 59 (150)
T d2q66a1 23 YANIFGFPGGVAWAM---LVARICQLYPNACSAVILNRFF 59 (150)
T ss_dssp CCGGGTSCCHHHHHH---HHHHHHHHSTTCCHHHHHHHHH
T ss_pred ccccccccHHHHHHH---HHHHHHHhCCCCCHHHHHHHHH
Done!