Query 048129
Match_columns 412
No_of_seqs 122 out of 701
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:32:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 1E-109 3E-114 842.7 38.4 362 44-412 1-373 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.4 0.011 2.4E-07 56.9 18.0 191 133-364 33-225 (247)
3 TIGR00740 methyltransferase, p 96.7 0.21 4.5E-06 47.6 18.8 107 158-281 53-160 (239)
4 TIGR02752 MenG_heptapren 2-hep 95.7 1.2 2.6E-05 41.9 18.0 180 148-367 35-216 (231)
5 TIGR02716 C20_methyl_CrtF C-20 94.7 1.9 4.1E-05 42.7 16.6 118 147-284 138-257 (306)
6 PF01209 Ubie_methyltran: ubiE 93.3 0.95 2.1E-05 43.5 11.1 179 149-368 38-219 (233)
7 TIGR00477 tehB tellurite resis 92.3 1.5 3.2E-05 40.7 10.6 113 145-279 17-130 (195)
8 PLN02233 ubiquinone biosynthes 91.6 14 0.0003 35.9 20.2 131 147-295 62-194 (261)
9 PF13847 Methyltransf_31: Meth 90.2 1.6 3.5E-05 38.3 8.2 106 157-281 2-109 (152)
10 PF09243 Rsm22: Mitochondrial 89.0 2 4.3E-05 42.2 8.6 138 141-299 12-156 (274)
11 PRK11207 tellurite resistance 89.0 7.1 0.00015 36.1 11.9 112 147-280 19-132 (197)
12 PLN02336 phosphoethanolamine N 88.9 33 0.00072 36.0 19.1 113 146-281 254-368 (475)
13 PTZ00098 phosphoethanolamine N 88.6 25 0.00054 34.1 16.6 114 145-280 39-154 (263)
14 PRK12335 tellurite resistance 88.3 6.1 0.00013 38.8 11.5 111 147-279 109-220 (287)
15 TIGR03438 probable methyltrans 87.8 7.4 0.00016 38.6 11.9 119 150-284 57-179 (301)
16 PF13649 Methyltransf_25: Meth 87.7 0.84 1.8E-05 37.2 4.3 94 162-271 1-95 (101)
17 PRK06202 hypothetical protein; 87.7 11 0.00024 35.6 12.5 109 155-280 57-165 (232)
18 TIGR01934 MenG_MenH_UbiE ubiqu 87.6 22 0.00049 32.5 18.8 117 146-283 27-145 (223)
19 PF13489 Methyltransf_23: Meth 87.5 6.3 0.00014 34.0 10.0 33 156-198 20-52 (161)
20 PRK09489 rsmC 16S ribosomal RN 85.7 12 0.00025 38.2 12.1 115 148-283 186-304 (342)
21 TIGR03439 methyl_EasF probable 84.3 14 0.0003 37.4 11.8 147 149-308 69-234 (319)
22 TIGR02021 BchM-ChlM magnesium 82.2 22 0.00049 33.0 11.8 116 141-280 36-156 (219)
23 PLN02585 magnesium protoporphy 82.2 46 0.001 33.5 14.6 102 158-280 144-248 (315)
24 TIGR03587 Pse_Me-ase pseudamin 81.7 15 0.00033 34.3 10.4 100 161-284 46-145 (204)
25 PLN02396 hexaprenyldihydroxybe 81.7 43 0.00093 33.8 14.2 154 159-368 132-288 (322)
26 PRK00216 ubiE ubiquinone/menaq 79.7 51 0.0011 30.4 18.2 113 150-280 43-156 (239)
27 TIGR02072 BioC biotin biosynth 79.6 51 0.0011 30.3 14.8 185 158-383 34-219 (240)
28 PRK01683 trans-aconitate 2-met 79.2 24 0.00051 33.7 11.0 111 147-282 20-130 (258)
29 COG4106 Tam Trans-aconitate me 78.7 8.3 0.00018 37.1 7.4 112 153-289 25-136 (257)
30 COG2226 UbiE Methylase involve 78.6 67 0.0015 31.1 18.2 189 136-366 28-221 (238)
31 smart00138 MeTrc Methyltransfe 76.2 15 0.00033 35.7 8.8 54 156-210 97-151 (264)
32 PRK11036 putative S-adenosyl-L 75.1 30 0.00064 33.2 10.5 112 149-280 36-147 (255)
33 PRK15001 SAM-dependent 23S rib 74.7 28 0.00061 36.0 10.6 119 148-282 218-340 (378)
34 PRK14103 trans-aconitate 2-met 74.7 37 0.00081 32.4 11.0 109 149-285 20-129 (255)
35 PRK05785 hypothetical protein; 74.4 73 0.0016 30.1 12.8 94 159-282 52-146 (226)
36 PRK08317 hypothetical protein; 74.3 71 0.0015 29.3 16.6 112 150-281 11-123 (241)
37 TIGR00537 hemK_rel_arch HemK-r 74.0 67 0.0014 28.8 12.9 104 161-287 22-145 (179)
38 PF00891 Methyltransf_2: O-met 73.9 81 0.0017 29.7 13.9 112 148-287 90-205 (241)
39 PRK10909 rsmD 16S rRNA m(2)G96 73.6 53 0.0012 30.7 11.4 107 160-287 55-164 (199)
40 PF03291 Pox_MCEL: mRNA cappin 73.2 19 0.00041 36.6 8.8 127 145-284 45-189 (331)
41 PRK00107 gidB 16S rRNA methylt 71.8 84 0.0018 29.0 14.1 98 159-282 46-145 (187)
42 PF02353 CMAS: Mycolic acid cy 71.8 42 0.00091 33.0 10.7 113 148-281 52-165 (273)
43 PRK11705 cyclopropane fatty ac 71.5 60 0.0013 33.5 12.3 109 148-281 157-266 (383)
44 PF03848 TehB: Tellurite resis 69.7 45 0.00099 31.2 9.9 111 148-281 20-132 (192)
45 TIGR00138 gidB 16S rRNA methyl 69.5 54 0.0012 30.0 10.3 97 159-281 43-141 (181)
46 PLN02336 phosphoethanolamine N 68.7 87 0.0019 32.9 13.1 113 148-282 27-142 (475)
47 smart00650 rADc Ribosomal RNA 68.2 76 0.0016 28.2 10.9 109 149-283 4-114 (169)
48 PRK11873 arsM arsenite S-adeno 68.1 69 0.0015 30.8 11.3 100 160-280 79-181 (272)
49 PF05175 MTS: Methyltransferas 66.0 94 0.002 27.8 11.0 118 146-282 19-140 (170)
50 PF13679 Methyltransf_32: Meth 65.2 21 0.00045 31.2 6.4 42 154-199 21-62 (141)
51 PRK05134 bifunctional 3-demeth 63.7 1.3E+02 0.0027 28.1 19.1 104 156-281 46-150 (233)
52 TIGR02081 metW methionine bios 63.7 96 0.0021 28.2 10.9 45 149-205 6-50 (194)
53 PF07521 RMMBL: RNA-metabolisi 63.0 15 0.00033 25.7 4.1 35 246-280 1-38 (43)
54 PLN02244 tocopherol O-methyltr 62.6 1.8E+02 0.0038 29.4 16.4 100 158-280 118-221 (340)
55 COG2227 UbiG 2-polyprenyl-3-me 62.5 26 0.00057 34.0 6.9 100 158-280 59-159 (243)
56 PF08241 Methyltransf_11: Meth 62.0 37 0.0008 26.0 6.8 93 163-279 1-94 (95)
57 smart00828 PKS_MT Methyltransf 60.8 96 0.0021 28.6 10.5 100 161-280 2-102 (224)
58 COG2230 Cfa Cyclopropane fatty 58.1 38 0.00082 33.7 7.4 111 148-279 62-173 (283)
59 PF12847 Methyltransf_18: Meth 56.2 27 0.00058 28.3 5.2 102 161-281 4-110 (112)
60 TIGR00417 speE spermidine synt 55.3 2.1E+02 0.0045 27.8 13.0 108 161-281 75-185 (270)
61 PRK13168 rumA 23S rRNA m(5)U19 53.3 1.6E+02 0.0035 30.8 11.7 103 157-282 296-400 (443)
62 TIGR01626 ytfJ_HI0045 conserve 53.1 38 0.00083 31.5 6.2 106 158-272 59-182 (184)
63 TIGR02129 hisA_euk phosphoribo 52.7 19 0.0004 35.3 4.2 28 155-186 50-77 (253)
64 TIGR03534 RF_mod_PrmC protein- 52.4 2E+02 0.0043 26.8 11.3 80 158-256 87-166 (251)
65 TIGR02085 meth_trns_rumB 23S r 52.0 2.4E+02 0.0052 28.9 12.5 98 161-282 236-334 (374)
66 PRK07580 Mg-protoporphyrin IX 50.3 2.1E+02 0.0045 26.3 12.3 100 157-280 62-163 (230)
67 COG0052 RpsB Ribosomal protein 49.7 4.8 0.0001 39.2 -0.4 117 158-286 36-169 (252)
68 TIGR00406 prmA ribosomal prote 49.6 2.1E+02 0.0045 28.1 11.2 113 143-280 142-257 (288)
69 PRK03522 rumB 23S rRNA methylu 49.5 2.6E+02 0.0057 27.7 12.0 101 159-283 174-275 (315)
70 PLN02446 (5-phosphoribosyl)-5- 49.4 26 0.00056 34.5 4.6 27 155-182 55-81 (262)
71 TIGR00091 tRNA (guanine-N(7)-) 49.1 1.1E+02 0.0024 28.0 8.7 111 159-284 17-134 (194)
72 PRK00811 spermidine synthase; 48.8 1.7E+02 0.0036 28.8 10.4 109 161-283 79-192 (283)
73 TIGR00452 methyltransferase, p 45.8 2.5E+02 0.0055 28.2 11.2 113 149-281 112-224 (314)
74 PRK14968 putative methyltransf 43.0 2.3E+02 0.0051 24.9 12.5 42 159-211 24-65 (188)
75 PRK00274 ksgA 16S ribosomal RN 43.0 1E+02 0.0022 30.0 7.8 63 136-209 15-82 (272)
76 PF08242 Methyltransf_12: Meth 41.3 25 0.00054 28.0 2.7 96 163-276 1-97 (99)
77 TIGR03533 L3_gln_methyl protei 41.0 3.6E+02 0.0078 26.4 12.0 50 159-221 122-171 (284)
78 TIGR01983 UbiG ubiquinone bios 40.9 2.9E+02 0.0062 25.3 14.4 101 158-280 45-147 (224)
79 PRK06922 hypothetical protein; 40.0 1.9E+02 0.0041 32.4 9.8 103 159-280 419-535 (677)
80 COG2242 CobL Precorrin-6B meth 39.8 68 0.0015 30.0 5.6 52 152-215 28-82 (187)
81 PTZ00338 dimethyladenosine tra 39.6 95 0.0021 30.9 7.0 51 150-211 28-78 (294)
82 COG0075 Serine-pyruvate aminot 39.0 3.1E+02 0.0067 28.5 10.8 37 330-366 252-290 (383)
83 TIGR02469 CbiT precorrin-6Y C5 38.9 91 0.002 25.3 5.9 43 161-212 22-64 (124)
84 PLN02490 MPBQ/MSBQ methyltrans 38.5 3.1E+02 0.0068 28.0 10.6 100 158-280 113-213 (340)
85 TIGR03504 FimV_Cterm FimV C-te 38.3 51 0.0011 23.4 3.5 27 54-84 9-35 (44)
86 PRK10258 biotin biosynthesis p 38.1 3.5E+02 0.0076 25.5 14.0 109 145-280 29-138 (251)
87 PF02283 CobU: Cobinamide kina 36.7 2.6E+02 0.0057 25.3 8.9 116 174-299 12-142 (167)
88 PRK15068 tRNA mo(5)U34 methylt 34.7 4.8E+02 0.01 26.1 12.1 113 149-281 113-225 (322)
89 COG0426 FpaA Uncharacterized f 34.4 2.1E+02 0.0045 29.9 8.6 160 167-332 220-386 (388)
90 PRK08287 cobalt-precorrin-6Y C 33.5 1.5E+02 0.0032 26.8 6.8 44 159-211 32-75 (187)
91 COG1341 Predicted GTPase or GT 33.2 2.3E+02 0.005 29.6 8.7 40 247-286 174-213 (398)
92 PRK07402 precorrin-6B methylas 32.4 1.4E+02 0.0031 27.1 6.6 116 144-282 26-142 (196)
93 TIGR03840 TMPT_Se_Te thiopurin 32.2 4.3E+02 0.0093 24.8 10.3 36 159-205 35-70 (213)
94 PRK13255 thiopurine S-methyltr 32.2 3.1E+02 0.0067 25.9 9.0 36 159-205 38-73 (218)
95 PF15609 PRTase_2: Phosphoribo 31.6 3.4E+02 0.0074 25.5 8.8 69 154-228 118-187 (191)
96 COG4783 Putative Zn-dependent 30.7 66 0.0014 34.3 4.4 50 201-256 73-122 (484)
97 PF06877 RraB: Regulator of ri 30.4 2.2E+02 0.0047 23.2 6.8 78 144-221 3-98 (104)
98 PRK11088 rrmA 23S rRNA methylt 29.9 2.8E+02 0.0062 26.7 8.5 45 158-208 85-129 (272)
99 cd02440 AdoMet_MTases S-adenos 29.9 2.3E+02 0.005 21.0 9.3 102 161-281 1-103 (107)
100 COG1500 Predicted exosome subu 29.3 1.9E+02 0.0042 27.9 6.8 80 301-383 72-154 (234)
101 PF04461 DUF520: Protein of un 28.5 85 0.0018 28.6 4.1 32 190-226 127-158 (160)
102 smart00857 Resolvase Resolvase 28.5 3.7E+02 0.008 22.8 9.3 79 203-282 16-104 (148)
103 TIGR01007 eps_fam capsular exo 27.8 4.6E+02 0.01 23.7 11.0 78 209-287 115-193 (204)
104 TIGR01716 RGG_Cterm transcript 27.6 1E+02 0.0022 28.4 4.8 54 44-97 127-181 (220)
105 PRK13944 protein-L-isoaspartat 27.2 1.7E+02 0.0038 27.0 6.3 107 149-280 63-171 (205)
106 KOG2904 Predicted methyltransf 27.2 1E+02 0.0023 30.8 4.8 60 149-221 136-198 (328)
107 TIGR00536 hemK_fam HemK family 26.6 6E+02 0.013 24.7 11.8 49 160-221 116-164 (284)
108 KOG2862 Alanine-glyoxylate ami 26.4 5.9E+02 0.013 26.1 9.9 66 158-227 116-181 (385)
109 PRK14896 ksgA 16S ribosomal RN 26.4 3.1E+02 0.0066 26.4 8.0 43 158-211 29-71 (258)
110 KOG4300 Predicted methyltransf 25.5 6.3E+02 0.014 24.5 12.4 119 156-296 74-195 (252)
111 PRK09328 N5-glutamine S-adenos 25.3 2.1E+02 0.0046 27.2 6.7 48 156-212 106-153 (275)
112 PF11455 DUF3018: Protein of 25.0 44 0.00096 25.9 1.4 20 349-368 4-23 (65)
113 PRK00517 prmA ribosomal protei 24.6 1.6E+02 0.0034 28.2 5.6 59 143-211 102-162 (250)
114 PF06711 DUF1198: Protein of u 24.5 82 0.0018 28.1 3.2 34 348-382 89-122 (148)
115 cd02685 MIT_C MIT_C; domain fo 24.3 2.6E+02 0.0057 25.2 6.4 71 156-226 18-91 (148)
116 COG4301 Uncharacterized conser 23.7 2.2E+02 0.0048 28.2 6.2 127 145-283 60-194 (321)
117 PRK14966 unknown domain/N5-glu 23.6 8.9E+02 0.019 25.6 11.4 51 161-224 254-304 (423)
118 PRK11805 N5-glutamine S-adenos 23.6 3.9E+02 0.0084 26.6 8.3 49 160-221 135-183 (307)
119 COG2263 Predicted RNA methylas 23.6 6.3E+02 0.014 23.9 11.0 114 159-299 46-159 (198)
120 TIGR00755 ksgA dimethyladenosi 23.3 2E+02 0.0043 27.5 6.0 49 148-207 19-67 (253)
121 PRK04148 hypothetical protein; 23.0 1.5E+02 0.0032 26.2 4.5 40 150-198 8-47 (134)
122 PRK05412 putative nucleotide-b 22.7 1E+02 0.0022 28.2 3.5 32 190-226 127-158 (161)
123 KOG1165 Casein kinase (serine/ 22.6 47 0.001 34.2 1.5 12 157-168 165-176 (449)
124 COG0123 AcuC Deacetylases, inc 22.2 72 0.0016 32.5 2.8 43 246-288 206-255 (340)
125 PF05401 NodS: Nodulation prot 22.1 6.8E+02 0.015 23.7 9.0 111 149-282 33-146 (201)
126 PF13768 VWA_3: von Willebrand 21.9 1.1E+02 0.0024 26.5 3.6 37 149-186 114-151 (155)
127 PF02056 Glyco_hydro_4: Family 21.8 4.8E+02 0.01 24.2 8.0 56 170-227 9-64 (183)
128 PRK00121 trmB tRNA (guanine-N( 21.1 1.8E+02 0.0039 26.9 5.0 106 158-280 40-154 (202)
129 PRK03646 dadX alanine racemase 20.7 2.1E+02 0.0046 29.1 5.9 53 159-216 118-177 (355)
130 PLN02366 spermidine synthase 20.5 8.6E+02 0.019 24.3 11.2 110 161-282 94-206 (308)
131 PRK14121 tRNA (guanine-N(7)-)- 20.4 2.3E+02 0.0049 29.6 6.0 116 150-283 114-236 (390)
132 PF05582 Peptidase_U57: YabG p 20.4 1E+02 0.0022 30.7 3.3 40 263-302 144-196 (287)
133 PRK13587 1-(5-phosphoribosyl)- 20.3 1.4E+02 0.003 28.6 4.2 33 153-185 42-76 (234)
134 PLN02232 ubiquinone biosynthes 20.2 6E+02 0.013 22.3 13.6 79 194-283 1-83 (160)
135 COG1519 KdtA 3-deoxy-D-manno-o 20.1 6.1E+02 0.013 26.8 9.0 23 265-287 115-137 (419)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=1.4e-109 Score=842.74 Aligned_cols=362 Identities=36% Similarity=0.631 Sum_probs=333.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHhhhcccCCCcccccccccccccCChHHHHh
Q 048129 44 LVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQPEETIL 123 (412)
Q Consensus 44 l~~lLl~cA~Av~~~~~~~A~~lL~~l~~~~s~~G~~~qRla~yF~eAL~~Rl~~~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (412)
|+|||++||+||++||.+.|+.+|++|++++||+|||+||+|+||++||.+|+.+ +|...+..+... ..++.. ..
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~-~~~~~~~~~~~~---~~~~~~-~~ 75 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSG-SGPGLYSALPPS---SPSPSE-SS 75 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhc-cCcccccCCCCc---cccccc-hH
Confidence 6899999999999999999999999999999999999999999999999999996 333333222211 111111 11
Q ss_pred hHHHHHHHHHhcCchhhHHHHHhhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCC---C
Q 048129 124 SLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSS---S 200 (412)
Q Consensus 124 ~~~~a~~~~~~~sP~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~---~ 200 (412)
....+++.||+.|||+||+|||||||||||++|+++||||||||++|.|||+|||+||.|++||| +||||||+++ +
T Consensus 76 ~~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~~~ 154 (374)
T PF03514_consen 76 EQLAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPP-SLRITGIGPPNSGS 154 (374)
T ss_pred HHHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCC-eEEEEeccCCCCCc
Confidence 23458899999999999999999999999999999999999999999999999999999999998 7999999983 5
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccccCCCCceEEEeecccc--------CCCCchHHHHHHHHhc
Q 048129 201 KQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILL--------SRTRHPDFLIKMLRKI 272 (412)
Q Consensus 201 ~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L--------~~~~~~~~~L~~vr~L 272 (412)
.+.+++||+||.+||+++||||||++|.+.++++++++++++++||+|||||+++| ...++++.||+.||+|
T Consensus 155 ~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L 234 (374)
T PF03514_consen 155 ADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSL 234 (374)
T ss_pred HHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhc
Confidence 77899999999999999999999999767899999999999999999999999999 2245799999999999
Q ss_pred CCCEEEEEeecCcCCCCchHHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhHHHHHhHhhccccccccccchhH
Q 048129 273 SPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDA 352 (412)
Q Consensus 273 ~P~vvvl~E~ea~~n~~~F~~RF~eaL~~YsalFdsLda~~~~~~~~R~~iE~~~lg~eI~niVa~eG~~R~eR~e~~~~ 352 (412)
+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++++
T Consensus 235 ~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~ 314 (374)
T PF03514_consen 235 NPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQ 314 (374)
T ss_pred CCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeeecCCcchHHHHHHHHHHcCCCCceEEEecCCEEEEeECCceeEEEecC
Q 048129 353 WRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKGSPQLSLSVW 412 (412)
Q Consensus 353 W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~~~~~~~~~~~~l~L~Wk~~pL~~~SaW 412 (412)
|+.||.+|||+++|+|++++.||+.|+++|+ +++|++++++|||+||||++||+++|||
T Consensus 315 W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaW 373 (374)
T PF03514_consen 315 WRRRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAW 373 (374)
T ss_pred HHHHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCc
Confidence 9999999999999999999999999999998 6779999999999999999999999999
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.45 E-value=0.011 Score=56.89 Aligned_cols=191 Identities=11% Similarity=0.146 Sum_probs=101.7
Q ss_pred HhcCchhhHHHHHhhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHH
Q 048129 133 YKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLA 212 (412)
Q Consensus 133 ~~~sP~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~ 212 (412)
....|.+...|-.++..+-.-+. ..-+|+|+|.|.|.-- ..|+.+-.. | ..++|||+. +...++.+.+++.
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~----~~l~~~~~~-~-~~~v~gvD~-S~~ml~~A~~~~~ 103 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAAT----LSVRRNIHH-D-NCKIIAIDN-SPAMIERCRRHID 103 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHH----HHHHHhcCC-C-CCeEEEEeC-CHHHHHHHHHHHH
Confidence 34578888888776654333232 2357999999998733 334432212 3 388999997 5566777766664
Q ss_pred HHHHhcCCcEEEEEeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEE-EEEeecCcCCCCc
Q 048129 213 YFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVM-VIIEVEANHNSQN 290 (412)
Q Consensus 213 ~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vv-vl~E~ea~~n~~~ 290 (412)
++. ..-.++|.. .+..++.. ...++++.|..++.-.+..+..+++.+ +.|+|.-. +++|.=... .+.
T Consensus 104 ~~~--~~~~v~~~~---~d~~~~~~-----~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~-~~~ 172 (247)
T PRK15451 104 AYK--APTPVDVIE---GDIRDIAI-----ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE-DAK 172 (247)
T ss_pred hcC--CCCCeEEEe---CChhhCCC-----CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC-cch
Confidence 422 111344432 33333322 223566666655543344456677666 78899855 455643322 233
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhHHHHHhHhhccccccccccchhHHHHHHHhCCCee
Q 048129 291 FEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVE 364 (412)
Q Consensus 291 F~~RF~eaL~~YsalFdsLda~~~~~~~~R~~iE~~~lg~eI~niVa~eG~~R~eR~e~~~~W~~r~~~aGF~~ 364 (412)
..+.+.+..+.|. .....+ ...+++. ....+| +-++++.++..++|+.|||..
T Consensus 173 ~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~~~---------~~~~~~~~~~~~~L~~aGF~~ 225 (247)
T PRK15451 173 VGELLFNMHHDFK-----RANGYS-----ELEISQK--RSMLEN---------VMLTDSVETHKARLHKAGFEH 225 (247)
T ss_pred hHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHHHh---------hcccCCHHHHHHHHHHcCchh
Confidence 3444443332221 111111 1112221 111233 234567788999999999965
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.72 E-value=0.21 Score=47.62 Aligned_cols=107 Identities=12% Similarity=0.221 Sum_probs=62.3
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCcc
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNE 237 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~ 237 (412)
..-+|+|+|.|.|. ++..|+.+-..| ..++|||+. +...++.+.+++.++. .+.+.+|.. .+..++..
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~~p--~~~v~gvD~-s~~ml~~a~~~~~~~~--~~~~v~~~~---~d~~~~~~ 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNINQP--NVKIIGIDN-SQPMVERCRQHIAAYH--SEIPVEILC---NDIRHVEI 120 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcCCC--CCeEEEEeC-CHHHHHHHHHHHHhcC--CCCCeEEEE---CChhhCCC
Confidence 44579999999985 555566553233 389999997 5566777766665432 122344432 23333322
Q ss_pred ccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEe
Q 048129 238 DKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIE 281 (412)
Q Consensus 238 ~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E 281 (412)
.+..+++.+..++.-.+.....+|+.+ +.|+|.-.+++-
T Consensus 121 -----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 -----KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred -----CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 223455555554433333345666666 778999877764
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.70 E-value=1.2 Score=41.85 Aligned_cols=180 Identities=15% Similarity=0.158 Sum_probs=87.1
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
+.++..+.=...-+|+|+|.|.|.-. ..|+.+- +| ..++|||+. +...++.+.+++. ..+++ ....+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~----~~la~~~--~~-~~~v~gvD~-s~~~~~~a~~~~~----~~~~~-~v~~~ 101 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWS----IALAEAV--GP-EGHVIGLDF-SENMLSVGRQKVK----DAGLH-NVELV 101 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHH----HHHHHHh--CC-CCEEEEEEC-CHHHHHHHHHHHH----hcCCC-ceEEE
Confidence 44555554334458999999988733 3444432 23 368999987 4455555555543 33443 22223
Q ss_pred ecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHH-HHhcCCCEEEEEeecCcCCCCchHHHHHHHHHHHHHHH
Q 048129 228 LVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKM-LRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASF 306 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~-vr~L~P~vvvl~E~ea~~n~~~F~~RF~eaL~~YsalF 306 (412)
. .+.+++.. .-..=+.|+.+ +.+........+|+. .+.|+|.-.+++-.....+.+ -+...+.+|...+
T Consensus 102 ~-~d~~~~~~---~~~~fD~V~~~--~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~----~~~~~~~~~~~~~ 171 (231)
T TIGR02752 102 H-GNAMELPF---DDNSFDYVTIG--FGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIP----GFKQLYFFYFKYI 171 (231)
T ss_pred E-echhcCCC---CCCCccEEEEe--cccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCCh----HHHHHHHHHHcCh
Confidence 2 22222221 11122344444 334232334456664 578999876665433333322 2333333332211
Q ss_pred -HHhhhhcCCCCHHHHHHHHHHHhHHHHHhHhhccccccccccchhHHHHHHHhCCCeeecC
Q 048129 307 -DCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAEL 367 (412)
Q Consensus 307 -dsLda~~~~~~~~R~~iE~~~lg~eI~niVa~eG~~R~eR~e~~~~W~~r~~~aGF~~~~l 367 (412)
..+...+.... .+...+.+.+. +--+.++++..|+.+||..+.+
T Consensus 172 ~p~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 172 MPLFGKLFAKSY-----KEYSWLQESTR------------DFPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred hHHhhHHhcCCH-----HHHHHHHHHHH------------HcCCHHHHHHHHHHcCCCeeEE
Confidence 11122222111 11111222222 2235578999999999987544
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.68 E-value=1.9 Score=42.66 Aligned_cols=118 Identities=11% Similarity=0.101 Sum_probs=64.2
Q ss_pred hHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEE
Q 048129 147 TQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKI 226 (412)
Q Consensus 147 NqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~ 226 (412)
.+.|++.+.-.+.-+|+|+|.|.|. +...++++. | .+++|+++. + ..++.+.+ .++..|+.=.++.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p-~~~~~~~D~-~-~~~~~a~~----~~~~~gl~~rv~~ 203 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---P-ELDSTILNL-P-GAIDLVNE----NAAEKGVADRMRG 203 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---C-CCEEEEEec-H-HHHHHHHH----HHHhCCccceEEE
Confidence 4567777665555699999999884 455566553 3 489999975 2 34544443 4455565422333
Q ss_pred eecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEE-EEeecC
Q 048129 227 VLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMV-IIEVEA 284 (412)
Q Consensus 227 v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvv-l~E~ea 284 (412)
+. .+..+. .+ .+.+++++...++-..+.....+|+.+ +.|+|.-.+ ++|.-.
T Consensus 204 ~~-~d~~~~---~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 204 IA-VDIYKE---SY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred Ee-cCccCC---CC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 32 222111 11 223444443333222233345677665 789996555 556543
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.33 E-value=0.95 Score=43.49 Aligned_cols=179 Identities=18% Similarity=0.185 Sum_probs=66.9
Q ss_pred HHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 048129 149 AIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVL 228 (412)
Q Consensus 149 aIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~ 228 (412)
.+++.+...+.-+|+|++.|.|.-+. .|+.+. +| .-+|||++. +..-|+.+.+++.+.... ..+|..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~----~l~~~~-~~--~~~v~~vD~-s~~ML~~a~~k~~~~~~~---~i~~v~-- 104 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTR----ELARRV-GP--NGKVVGVDI-SPGMLEVARKKLKREGLQ---NIEFVQ-- 104 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHH----HHGGGS-S-----EEEEEES--HHHHHHHHHHHHHTT-----SEEEEE--
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHH----HHHHHC-CC--ccEEEEecC-CHHHHHHHHHHHHhhCCC---CeeEEE--
Confidence 34455555666799999999996544 345443 22 368999987 667788888887765433 333333
Q ss_pred cCCCCCCccccccCCCCceEEEeecccc-CCCCchHHHHHHHHhcCCCEEEE-EeecCcCCCCchHHHHHHHHHHHHHHH
Q 048129 229 VTETKDLNEDKFDLNAGEAVAVYSPILL-SRTRHPDFLIKMLRKISPCVMVI-IEVEANHNSQNFEDRFFEVLFHYSASF 306 (412)
Q Consensus 229 ~~~~e~l~~~~l~~~~~E~laVn~~~~L-~~~~~~~~~L~~vr~L~P~vvvl-~E~ea~~n~~~F~~RF~eaL~~YsalF 306 (412)
.+.++ +...++..=+|-|.|.| ..++....+=+..|-|+|.-.++ +|-.-..| .++ ...+..|...+
T Consensus 105 -~da~~-----lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~~---~~~~~~y~~~i 173 (233)
T PF01209_consen 105 -GDAED-----LPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRN--PLL---RALYKFYFKYI 173 (233)
T ss_dssp --BTTB-------S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS--HHH---HHHHHH-----
T ss_pred -cCHHH-----hcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC--chh---hceeeeeeccc
Confidence 22333 33445666677888888 44554444445668899976444 45433332 223 33334444432
Q ss_pred H-HhhhhcCCCCHHHHHHHHHHHhHHHHHhHhhccccccccccchhHHHHHHHhCCCeeecCC
Q 048129 307 D-CLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELS 368 (412)
Q Consensus 307 d-sLda~~~~~~~~R~~iE~~~lg~eI~niVa~eG~~R~eR~e~~~~W~~r~~~aGF~~~~ls 368 (412)
- -+...+..+ +.. ..+|.+-|.+... .++-.+.|+.+||+.+...
T Consensus 174 lP~~g~l~~~~---~~~--Y~yL~~Si~~f~~------------~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 174 LPLIGRLLSGD---REA--YRYLPESIRRFPS------------PEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccc---ccc--ccccccccccccc------------ccccccccccccccccccc
Confidence 2 222222221 221 2356666665432 2344568889999876543
No 7
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=92.35 E-value=1.5 Score=40.67 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=65.9
Q ss_pred HhhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 048129 145 AGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSF 224 (412)
Q Consensus 145 taNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef 224 (412)
++...|++++.-...-+|+|+|.|.|.--. .||.+ | .++|||+. +...++.+ .+.++.-|++..+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~--g----~~V~~iD~-s~~~l~~a----~~~~~~~~~~v~~ 81 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA--G----YDVRAWDH-NPASIASV----LDMKARENLPLRT 81 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC--C----CeEEEEEC-CHHHHHHH----HHHHHHhCCCcee
Confidence 556788888875556799999999997443 44444 2 36899987 43444433 3445556777544
Q ss_pred EEeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEE
Q 048129 225 KIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVI 279 (412)
Q Consensus 225 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl 279 (412)
.... ..+.. +. ..=+.++.+..+..-.+..+..+++.+ +.|+|.-.++
T Consensus 82 ~~~d---~~~~~---~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 82 DAYD---INAAA---LN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred Eecc---chhcc---cc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 4332 21111 11 122555555555433334566777765 7789997633
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.62 E-value=14 Score=35.89 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=67.2
Q ss_pred hHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEE
Q 048129 147 TQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKI 226 (412)
Q Consensus 147 NqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~ 226 (412)
...+++.+.-...-+|+|+|.|.|. +...|+.+. +| .-+||||+. +...++.+.++....++...-..+|..
T Consensus 62 r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~-~~--~~~V~gvD~-S~~ml~~A~~r~~~~~~~~~~~i~~~~ 133 (261)
T PLN02233 62 KRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV-GS--DGKVMGLDF-SSEQLAVAASRQELKAKSCYKNIEWIE 133 (261)
T ss_pred HHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh-CC--CCEEEEEEC-CHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 3444444433445689999999997 334566553 22 258999997 666677776665332322222344433
Q ss_pred eecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHH-HHHhcCCCEEE-EEeecCcCCCCchHHHH
Q 048129 227 VLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIK-MLRKISPCVMV-IIEVEANHNSQNFEDRF 295 (412)
Q Consensus 227 v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~-~vr~L~P~vvv-l~E~ea~~n~~~F~~RF 295 (412)
- +.+++. ..++..=+|-+.+.+..-.....+|+ ..|-|+|.-.+ ++|-.. ....|...+
T Consensus 134 ~---d~~~lp-----~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~--~~~~~~~~~ 194 (261)
T PLN02233 134 G---DATDLP-----FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK--STQPFTTSM 194 (261)
T ss_pred c---ccccCC-----CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC--CCcHHHHHH
Confidence 2 233332 22222223334444422223444555 44889998544 444432 223455544
No 9
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.17 E-value=1.6 Score=38.31 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=59.4
Q ss_pred CCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeecCCCCCC
Q 048129 157 AKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP-FSFKIVLVTETKDL 235 (412)
Q Consensus 157 ~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~-Fef~~v~~~~~e~l 235 (412)
.+..+|+|+|.|.|..=..|.+ +- +| ..++|||+. +...+ ++..+.++..|++ .+|..- ++.++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~----~~-~~--~~~i~gvD~-s~~~i----~~a~~~~~~~~~~ni~~~~~---d~~~l 66 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAK----EL-NP--GAKIIGVDI-SEEMI----EYAKKRAKELGLDNIEFIQG---DIEDL 66 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHH----HS-TT--TSEEEEEES-SHHHH----HHHHHHHHHTTSTTEEEEES---BTTCG
T ss_pred CCCCEEEEecCcCcHHHHHHHH----hc-CC--CCEEEEEEC-cHHHH----HHhhcccccccccccceEEe---ehhcc
Confidence 3567999999999865444443 21 22 266999987 44444 3444567778887 566554 34444
Q ss_pred ccccccCCCCceEEEeeccccCCCCchHHHHH-HHHhcCCCEEEEEe
Q 048129 236 NEDKFDLNAGEAVAVYSPILLSRTRHPDFLIK-MLRKISPCVMVIIE 281 (412)
Q Consensus 236 ~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~-~vr~L~P~vvvl~E 281 (412)
... +. ..=+.++.+..+ ........+|+ ..+.|+|..++++.
T Consensus 67 ~~~-~~-~~~D~I~~~~~l--~~~~~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 67 PQE-LE-EKFDIIISNGVL--HHFPDPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp CGC-SS-TTEEEEEEESTG--GGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccc-cC-CCeeEEEEcCch--hhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 432 22 222444444443 22233334555 46888988777653
No 10
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=89.01 E-value=2 Score=42.25 Aligned_cols=138 Identities=19% Similarity=0.217 Sum_probs=74.7
Q ss_pred HHHHHhhHHHHhhhh----cCCeeEEEecccCCcc-chHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHH
Q 048129 141 ATLFAGTQAIIERVA----SAKRIHLIDLAIRSGS-HCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFA 215 (412)
Q Consensus 141 fa~~taNqaIleA~~----g~~~vHIID~~i~~G~-QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA 215 (412)
-+++++-..||+.++ +-+--+|+|||.|-|. =|.. .+.+ | ....+|.|+. +.. +.+.+++|.+-.
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~-~~~~~~~vd~-s~~-~~~l~~~l~~~~ 81 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------P-SLKEYTCVDR-SPE-MLELAKRLLRAG 81 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------c-CceeeeeecC-CHH-HHHHHHHHHhcc
Confidence 355677777777775 3345699999999883 3322 1222 1 2478999986 433 455677765533
Q ss_pred HhcCCcEEEEEeecCCCCCCccccccCCCCceEEE-eeccccCCCCchHHHHHHH-HhcCCCEEEEEeecCcCCCCchHH
Q 048129 216 ETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAV-YSPILLSRTRHPDFLIKML-RKISPCVMVIIEVEANHNSQNFED 293 (412)
Q Consensus 216 ~~lgv~Fef~~v~~~~~e~l~~~~l~~~~~E~laV-n~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E~ea~~n~~~F~~ 293 (412)
.... ..+... .+..+...+.+.+-|++ |.-..|.. ..+..+++.+ ..++| ++|++|+..-.+ -..+.
T Consensus 82 ~~~~-~~~~~~-------~~~~~~~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~-~LVlVEpGt~~G-f~~i~ 150 (274)
T PF09243_consen 82 PNNR-NAEWRR-------VLYRDFLPFPPDDLVIASYVLNELPS-AARAELVRSLWNKTAP-VLVLVEPGTPAG-FRRIA 150 (274)
T ss_pred cccc-cchhhh-------hhhcccccCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC-cEEEEcCCChHH-HHHHH
Confidence 2111 001111 11111122333333333 33334444 7778888888 55566 888888766554 34455
Q ss_pred HHHHHH
Q 048129 294 RFFEVL 299 (412)
Q Consensus 294 RF~eaL 299 (412)
+.++.|
T Consensus 151 ~aR~~l 156 (274)
T PF09243_consen 151 EARDQL 156 (274)
T ss_pred HHHHHH
Confidence 555544
No 11
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=89.00 E-value=7.1 Score=36.11 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=61.9
Q ss_pred hHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc-EEEE
Q 048129 147 TQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP-FSFK 225 (412)
Q Consensus 147 NqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~-Fef~ 225 (412)
++.+++.+.....-.|+|+|.|.|. +...||.+ | .+||||+. +...++.+.++ ++..|++ .++.
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g----~~V~gvD~-S~~~i~~a~~~----~~~~~~~~v~~~ 83 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G----FDVTAWDK-NPMSIANLERI----KAAENLDNLHTA 83 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C----CEEEEEeC-CHHHHHHHHHH----HHHcCCCcceEE
Confidence 3445555544445689999999987 33445655 2 37999987 44445444333 3334554 3333
Q ss_pred EeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEE
Q 048129 226 IVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVII 280 (412)
Q Consensus 226 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~ 280 (412)
.. ++.++. +. ..=+.|+.+..+..-.+..+..+++.+ +.|+|.-.+++
T Consensus 84 ~~---d~~~~~---~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 84 VV---DLNNLT---FD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred ec---ChhhCC---cC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 22 233222 11 122455555554433444566777766 78899987544
No 12
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=88.89 E-value=33 Score=36.01 Aligned_cols=113 Identities=12% Similarity=0.165 Sum_probs=62.1
Q ss_pred hhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEE
Q 048129 146 GTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFK 225 (412)
Q Consensus 146 aNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~ 225 (412)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+. +...++.+.++. ...+...+|.
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~-----~~v~gvDi-S~~~l~~A~~~~----~~~~~~v~~~ 319 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD-----VHVVGIDL-SVNMISFALERA----IGRKCSVEFE 319 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC-----CEEEEEEC-CHHHHHHHHHHh----hcCCCceEEE
Confidence 34556666653445689999999985 3455666542 47999987 555555554432 2344455554
Q ss_pred EeecCCCCCCccccccCCCCceEEEeecccc-CCCCchHHHHH-HHHhcCCCEEEEEe
Q 048129 226 IVLVTETKDLNEDKFDLNAGEAVAVYSPILL-SRTRHPDFLIK-MLRKISPCVMVIIE 281 (412)
Q Consensus 226 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L-~~~~~~~~~L~-~vr~L~P~vvvl~E 281 (412)
... +.++. ..++..=+|-|...+ ..+++. .+|+ ..+.|+|.-.+++.
T Consensus 320 ~~d---~~~~~-----~~~~~fD~I~s~~~l~h~~d~~-~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 320 VAD---CTKKT-----YPDNSFDVIYSRDTILHIQDKP-ALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EcC---cccCC-----CCCCCEEEEEECCcccccCCHH-HHHHHHHHHcCCCeEEEEE
Confidence 432 22221 112212222233333 333444 4555 45889999887765
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.55 E-value=25 Score=34.14 Aligned_cols=114 Identities=12% Similarity=0.157 Sum_probs=60.6
Q ss_pred HhhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 048129 145 AGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSF 224 (412)
Q Consensus 145 taNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef 224 (412)
-+.+.+++.+.-...-+|+|+|.|.|.-- ..|+.+. ..++|||+. +...++.+.++... .-..+|
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~-----~~~v~giD~-s~~~~~~a~~~~~~-----~~~i~~ 103 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY-----GAHVHGVDI-CEKMVNIAKLRNSD-----KNKIEF 103 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc-----CCEEEEEEC-CHHHHHHHHHHcCc-----CCceEE
Confidence 44566777776556678999999998732 3444432 157999987 44445555544322 112344
Q ss_pred EEeecCCCCCCccccccCCCCceEEEe-eccccCCCCchHHHHHHH-HhcCCCEEEEE
Q 048129 225 KIVLVTETKDLNEDKFDLNAGEAVAVY-SPILLSRTRHPDFLIKML-RKISPCVMVII 280 (412)
Q Consensus 225 ~~v~~~~~e~l~~~~l~~~~~E~laVn-~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~ 280 (412)
.... ..+.. +.-..=+.|+.+ +.+++ ....+..+|+.+ +.|+|.-.+++
T Consensus 104 ~~~D---~~~~~---~~~~~FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 104 EAND---ILKKD---FPENTFDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EECC---cccCC---CCCCCeEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3321 21111 110111344432 22332 112455677665 77899977776
No 14
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.26 E-value=6.1 Score=38.81 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=62.5
Q ss_pred hHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEE
Q 048129 147 TQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKI 226 (412)
Q Consensus 147 NqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~ 226 (412)
.+.+++++.-.+.-+|+|+|.|.|. +...|+.+ | .++|||+. +...++. +.+.|+..|+++++..
T Consensus 109 ~~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~--g----~~V~avD~-s~~ai~~----~~~~~~~~~l~v~~~~ 173 (287)
T PRK12335 109 HSEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL--G----FDVTAVDI-NQQSLEN----LQEIAEKENLNIRTGL 173 (287)
T ss_pred cHHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC--C----CEEEEEEC-CHHHHHH----HHHHHHHcCCceEEEE
Confidence 3345555532222389999999987 33455654 2 47999987 4444443 3455666777666554
Q ss_pred eecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEE
Q 048129 227 VLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVI 279 (412)
Q Consensus 227 v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl 279 (412)
.. +.+.. +. ..=+.|+.+..+..-.+..+..+++.+ +.|+|.-..+
T Consensus 174 ~D---~~~~~---~~-~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 174 YD---INSAS---IQ-EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred ec---hhccc---cc-CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 32 22211 10 122456555555433344566777765 7889987643
No 15
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=87.85 E-value=7.4 Score=38.61 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=70.0
Q ss_pred HHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeec
Q 048129 150 IIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLV 229 (412)
Q Consensus 150 IleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~ 229 (412)
|.+++. ....|||+|.|.|.-=..|++++.. ..++|+|+. +.+.|+.+.++|.+- .-+++ +..+.
T Consensus 57 ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~-------~~~~~~iDi-S~~mL~~a~~~l~~~--~p~~~--v~~i~- 121 (301)
T TIGR03438 57 IAAATG--AGCELVELGSGSSRKTRLLLDALRQ-------PARYVPIDI-SADALKESAAALAAD--YPQLE--VHGIC- 121 (301)
T ss_pred HHHhhC--CCCeEEecCCCcchhHHHHHHhhcc-------CCeEEEEEC-CHHHHHHHHHHHHhh--CCCce--EEEEE-
Confidence 444443 2357999999999777778877742 277999987 677888888887642 12344 44443
Q ss_pred CCCCCCcccccc-CCCCceEEEeecccc--CCCCchHHHHHHH-HhcCCCEEEEEeecC
Q 048129 230 TETKDLNEDKFD-LNAGEAVAVYSPILL--SRTRHPDFLIKML-RKISPCVMVIIEVEA 284 (412)
Q Consensus 230 ~~~e~l~~~~l~-~~~~E~laVn~~~~L--~~~~~~~~~L~~v-r~L~P~vvvl~E~ea 284 (412)
.+..+... ... ...+..+++.+...+ -.+.....+|+.+ +.|+|.-..++.-|.
T Consensus 122 gD~~~~~~-~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 122 ADFTQPLA-LPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred Ecccchhh-hhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 23322110 000 111235555443333 2344456788887 678998777765544
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=87.72 E-value=0.84 Score=37.18 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=50.7
Q ss_pred EEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCcccccc
Q 048129 162 LIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFD 241 (412)
Q Consensus 162 IID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l~ 241 (412)
|+|+|.|.|..=..|.+.+ .+ || ..++|||+. +...++.+.++..+ .|++.+|.. .+..++...
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~~--~~~~~gvD~-s~~~l~~~~~~~~~----~~~~~~~~~---~D~~~l~~~--- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--GP--SSRVIGVDI-SPEMLELAKKRFSE----DGPKVRFVQ---ADARDLPFS--- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS----------SEEEEEES--HHHHHHHHHHSHH----TTTTSEEEE---SCTTCHHHH---
T ss_pred CEEeecCCcHHHHHHHHHh-hh--cc--cceEEEEEC-CHHHHHHHHHhchh----cCCceEEEE---CCHhHCccc---
Confidence 7999999998877777776 22 33 389999987 55666665555444 556766633 334443321
Q ss_pred CCCCceEEE-eeccccCCCCchHHHHHHHHh
Q 048129 242 LNAGEAVAV-YSPILLSRTRHPDFLIKMLRK 271 (412)
Q Consensus 242 ~~~~E~laV-n~~~~L~~~~~~~~~L~~vr~ 271 (412)
-.+=+.|+. ++.+..-.+..+..+|+.+.+
T Consensus 65 ~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~ 95 (101)
T PF13649_consen 65 DGKFDLVVCSGLSLHHLSPEELEALLRRIAR 95 (101)
T ss_dssp SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHH
T ss_pred CCCeeEEEEcCCccCCCCHHHHHHHHHHHHH
Confidence 011122222 233444455566777777643
No 17
>PRK06202 hypothetical protein; Provisional
Probab=87.68 E-value=11 Score=35.57 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=55.2
Q ss_pred hcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCC
Q 048129 155 ASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKD 234 (412)
Q Consensus 155 ~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~ 234 (412)
...+...|+|+|.|.|. ....|.....+ .|| ..+||||+. +.+.++.+.++. ...|+.+.. ...+.+
T Consensus 57 ~~~~~~~iLDlGcG~G~-~~~~L~~~~~~-~g~--~~~v~gvD~-s~~~l~~a~~~~----~~~~~~~~~--~~~~~l-- 123 (232)
T PRK06202 57 SADRPLTLLDIGCGGGD-LAIDLARWARR-DGL--RLEVTAIDP-DPRAVAFARANP----RRPGVTFRQ--AVSDEL-- 123 (232)
T ss_pred CCCCCcEEEEeccCCCH-HHHHHHHHHHh-CCC--CcEEEEEcC-CHHHHHHHHhcc----ccCCCeEEE--Eecccc--
Confidence 33456789999999996 33322222222 244 378999987 445555444332 123454433 322222
Q ss_pred CccccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEE
Q 048129 235 LNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVII 280 (412)
Q Consensus 235 l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~ 280 (412)
.. .-..=+.|+.|..++--.+.....+|+.+.++.-..+++.
T Consensus 124 -~~---~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 124 -VA---EGERFDVVTSNHFLHHLDDAEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred -cc---cCCCccEEEECCeeecCChHHHHHHHHHHHHhcCeeEEEe
Confidence 11 0112245666554433222234568887766554555544
No 18
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=87.58 E-value=22 Score=32.47 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=61.3
Q ss_pred hhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEE
Q 048129 146 GTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFK 225 (412)
Q Consensus 146 aNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~ 225 (412)
..+.+++.+...+...|+|+|.|.|. +...++.+ +|+ ..++|+++. +...++.+.+++. .+-..+|.
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~-~~~~~~iD~-~~~~~~~~~~~~~-----~~~~i~~~ 93 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APD-RGKVTGVDF-SSEMLEVAKKKSE-----LPLNIEFI 93 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCC-CceEEEEEC-CHHHHHHHHHHhc-----cCCCceEE
Confidence 33455666655567899999999885 33444444 233 378999986 4455555554443 22233444
Q ss_pred EeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEE-eec
Q 048129 226 IVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVII-EVE 283 (412)
Q Consensus 226 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~-E~e 283 (412)
... ..++. ..++..=+|-+.+.+......+.+|+.+ +.|+|.-.+++ +..
T Consensus 94 ~~d---~~~~~-----~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 94 QAD---AEALP-----FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ecc---hhcCC-----CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 332 22221 1122222233334443333445566555 66788876654 443
No 19
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=87.50 E-value=6.3 Score=34.04 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=24.2
Q ss_pred cCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecC
Q 048129 156 SAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGS 198 (412)
Q Consensus 156 g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~ 198 (412)
..+.-.|+|+|.|.| . +.+.|+.+ | .++||++.
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~----~~~~g~D~ 52 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--G----FEVTGVDI 52 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--T----SEEEEEES
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--C----CEEEEEEC
Confidence 356679999999999 3 45555555 2 28999987
No 20
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=85.72 E-value=12 Score=38.20 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=68.2
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
..+++.+.....=+|+|+|.|.|. +-..|+.+ +| ..++|+|+. +...++.+.+++.+ .++..++...
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~--~p--~~~v~~vDi-s~~Al~~A~~nl~~----n~l~~~~~~~ 252 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARH--SP--KIRLTLSDV-SAAALESSRATLAA----NGLEGEVFAS 252 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHh--CC--CCEEEEEEC-CHHHHHHHHHHHHH----cCCCCEEEEc
Confidence 445555543323379999999986 44556655 23 378999987 55667766665543 4565555432
Q ss_pred ecCCCCCCccccccCCCCceEEEeeccccC---CCCchHHHHHH-HHhcCCCEEEEEeec
Q 048129 228 LVTETKDLNEDKFDLNAGEAVAVYSPILLS---RTRHPDFLIKM-LRKISPCVMVIIEVE 283 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~E~laVn~~~~L~---~~~~~~~~L~~-vr~L~P~vvvl~E~e 283 (412)
. -.+.+ -.+=+.|+.|-+|+-. .......+++. .+.|+|.-...+..+
T Consensus 253 D--~~~~~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 253 N--VFSDI------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred c--ccccc------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 1 11111 1233788889888641 12334556655 467899887766544
No 21
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=84.28 E-value=14 Score=37.36 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=87.4
Q ss_pred HHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc-EEEEEe
Q 048129 149 AIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP-FSFKIV 227 (412)
Q Consensus 149 aIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~-Fef~~v 227 (412)
.|..++. ....|||||.|.|..=..|+++|..+ +.| .+-.+|+- +.+.|+++.++|. .-..| +++++|
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~--~~~--~~Y~plDI-S~~~L~~a~~~L~----~~~~p~l~v~~l 137 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ--KKS--VDYYALDV-SRSELQRTLAELP----LGNFSHVRCAGL 137 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc--CCC--ceEEEEEC-CHHHHHHHHHhhh----hccCCCeEEEEE
Confidence 3444443 23479999999999999999999743 222 67899987 7788999999887 12245 888888
Q ss_pred ecCCCCCCcccccc--CCCCceEEE-eecccc--CCCCchHHHHHHHHh--cCCCEEEEEeecCcC---------CCC-c
Q 048129 228 LVTETKDLNEDKFD--LNAGEAVAV-YSPILL--SRTRHPDFLIKMLRK--ISPCVMVIIEVEANH---------NSQ-N 290 (412)
Q Consensus 228 ~~~~~e~l~~~~l~--~~~~E~laV-n~~~~L--~~~~~~~~~L~~vr~--L~P~vvvl~E~ea~~---------n~~-~ 290 (412)
.. +..+.-. .+. ..++...+| -.--.+ -.+.....||+.+++ |+|.-..++-.|... |.+ .
T Consensus 138 ~g-dy~~~l~-~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~g 215 (319)
T TIGR03439 138 LG-TYDDGLA-WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGG 215 (319)
T ss_pred Ee-cHHHHHh-hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcc
Confidence 63 2221100 010 011222222 211122 234445689999987 899877776555432 222 2
Q ss_pred hHHH-HHHHHHHHHHHHHH
Q 048129 291 FEDR-FFEVLFHYSASFDC 308 (412)
Q Consensus 291 F~~R-F~eaL~~YsalFds 308 (412)
...+ ..+.|++-...+++
T Consensus 216 vTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 216 VTRRFVLNGLVHANEILGS 234 (319)
T ss_pred hhHHHHHHHHHHHHHHhCc
Confidence 3333 35666666666654
No 22
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=82.22 E-value=22 Score=33.03 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=63.2
Q ss_pred HHHHHhhHHHHhhhh--cCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhc
Q 048129 141 ATLFAGTQAIIERVA--SAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETW 218 (412)
Q Consensus 141 fa~~taNqaIleA~~--g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~l 218 (412)
.++-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+. .++|||+. +...++.+.+++.. .
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~------~~v~gvD~-s~~~i~~a~~~~~~----~ 100 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG------AIVKAVDI-SEQMVQMARNRAQG----R 100 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC------CEEEEEEC-CHHHHHHHHHHHHh----c
Confidence 445566667777776 2456799999999985 556666541 37899987 55556655555532 3
Q ss_pred CC--cEEEEEeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHHHh-cCCCEEEEE
Q 048129 219 NL--PFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRK-ISPCVMVII 280 (412)
Q Consensus 219 gv--~Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~-L~P~vvvl~ 280 (412)
++ ..+|... +++++. ..=+.++.+..+..-.+.....+++.+.+ ++|.+++..
T Consensus 101 ~~~~~i~~~~~---d~~~~~------~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 101 DVAGNVEFEVN---DLLSLC------GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CCCCceEEEEC---ChhhCC------CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 33 3455433 233332 12234433222211122335566766654 566655543
No 23
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=82.18 E-value=46 Score=33.50 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=56.0
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHH-hc-CCcEEEEEeecCCCCCC
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAE-TW-NLPFSFKIVLVTETKDL 235 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~-~l-gv~Fef~~v~~~~~e~l 235 (412)
+.-.|+|+|.|.|. +...|+.+ | .++|||+. +...++.+.++..+.-. .. +...+|... +++++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~--g----~~V~gvD~-S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~---Dl~~l 209 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE--G----AIVSASDI-SAAMVAEAERRAKEALAALPPEVLPKFEAN---DLESL 209 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC--C----CEEEEEEC-CHHHHHHHHHHHHhcccccccccceEEEEc---chhhc
Confidence 45689999999886 44556554 2 47999987 55667766665533210 01 233455443 23332
Q ss_pred ccccccCCCCceEEEe-eccccCCCCchHHHHHHHHhcCCCEEEEE
Q 048129 236 NEDKFDLNAGEAVAVY-SPILLSRTRHPDFLIKMLRKISPCVMVII 280 (412)
Q Consensus 236 ~~~~l~~~~~E~laVn-~~~~L~~~~~~~~~L~~vr~L~P~vvvl~ 280 (412)
+ .. - +.|+.+ ..+++. ......+++.++++.|..+++.
T Consensus 210 ~-~~----f-D~Vv~~~vL~H~p-~~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 210 S-GK----Y-DTVTCLDVLIHYP-QDKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred C-CC----c-CEEEEcCEEEecC-HHHHHHHHHHHHhhcCCEEEEE
Confidence 1 11 1 222222 112221 2234568888888888888774
No 24
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=81.69 E-value=15 Score=34.28 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=56.7
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccc
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKF 240 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l 240 (412)
.|+|+|.|.|..-..| +.+. | ..++|||+. +...++.+.+++. ++. +..- +..+ + +
T Consensus 46 ~VLDiGCG~G~~~~~L----~~~~--~--~~~v~giDi-S~~~l~~A~~~~~------~~~--~~~~---d~~~--~--~ 101 (204)
T TIGR03587 46 SILELGANIGMNLAAL----KRLL--P--FKHIYGVEI-NEYAVEKAKAYLP------NIN--IIQG---SLFD--P--F 101 (204)
T ss_pred cEEEEecCCCHHHHHH----HHhC--C--CCeEEEEEC-CHHHHHHHHhhCC------CCc--EEEe---eccC--C--C
Confidence 5999999999655444 3331 1 267999987 5555665544321 232 2221 1211 1 1
Q ss_pred cCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEeecC
Q 048129 241 DLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEA 284 (412)
Q Consensus 241 ~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E~ea 284 (412)
.-..=+.|+.|..+.--.+..+..+++.+.+..=+.++++|...
T Consensus 102 ~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 102 KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 11112455555544322355677888888887778888888754
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=81.67 E-value=43 Score=33.83 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=77.3
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCC--cEEEEEeecCCCCCCc
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNL--PFSFKIVLVTETKDLN 236 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv--~Fef~~v~~~~~e~l~ 236 (412)
.-.|+|+|.|.|. +...|+.+ | .++|||+. +...++.+.++ ++..++ ..+|..- +.+++.
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g-----~~V~GID~-s~~~i~~Ar~~----~~~~~~~~~i~~~~~---dae~l~ 193 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G-----ATVTGVDA-VDKNVKIARLH----ADMDPVTSTIEYLCT---TAEKLA 193 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C-----CEEEEEeC-CHHHHHHHHHH----HHhcCcccceeEEec---CHHHhh
Confidence 3589999999997 45567643 2 47999987 44445444433 222222 3344332 233332
Q ss_pred cccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEeecCcCCCCchHHHHHHHHHHHHHHHHHhhhhcCC
Q 048129 237 EDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMAR 315 (412)
Q Consensus 237 ~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E~ea~~n~~~F~~RF~eaL~~YsalFdsLda~~~~ 315 (412)
... ..=++|+. ..-|..-...+.+|+.+ +-|+|.-.+++..- +.+.. .|...+
T Consensus 194 ~~~---~~FD~Vi~--~~vLeHv~d~~~~L~~l~r~LkPGG~liist~-nr~~~----------~~~~~i---------- 247 (322)
T PLN02396 194 DEG---RKFDAVLS--LEVIEHVANPAEFCKSLSALTIPNGATVLSTI-NRTMR----------AYASTI---------- 247 (322)
T ss_pred hcc---CCCCEEEE--hhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC-CcCHH----------HHHHhh----------
Confidence 110 11122222 22332222334577766 56799888876531 11100 011100
Q ss_pred CCHHHHHHHHHHHhHHHHHhHhhccccccccccchhHHHHHHHhCCCeeecCC
Q 048129 316 CDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELS 368 (412)
Q Consensus 316 ~~~~R~~iE~~~lg~eI~niVa~eG~~R~eR~e~~~~W~~r~~~aGF~~~~ls 368 (412)
.....+.+.+- .|.....+.-+.+.+...++++||..+...
T Consensus 248 -----------~~~eyi~~~lp-~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 248 -----------VGAEYILRWLP-KGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred -----------hhHHHHHhcCC-CCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 01112333332 344444445567889999999999887554
No 26
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=79.70 E-value=51 Score=30.42 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=56.4
Q ss_pred HHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeec
Q 048129 150 IIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLV 229 (412)
Q Consensus 150 IleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~ 229 (412)
+++.+.-....+|+|+|.|.|. +...++.+ +|+ ..++|+++. +...++.+.+++... .+.-+..|....
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~-~~~v~~~D~-s~~~~~~a~~~~~~~--~~~~~~~~~~~d- 111 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGK-TGEVVGLDF-SEGMLAVGREKLRDL--GLSGNVEFVQGD- 111 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCC-CCeEEEEeC-CHHHHHHHHHhhccc--ccccCeEEEecc-
Confidence 3444433345789999999985 33334433 233 588999987 444455454443221 122334444332
Q ss_pred CCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEE
Q 048129 230 TETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVII 280 (412)
Q Consensus 230 ~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~ 280 (412)
..++. +....-+.|+.+ +.+......+.+|+.+ +.|+|.-.+++
T Consensus 112 --~~~~~---~~~~~~D~I~~~--~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 112 --AEALP---FPDNSFDAVTIA--FGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred --cccCC---CCCCCccEEEEe--cccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 22221 111122344433 3333333445566655 67888876654
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=79.60 E-value=51 Score=30.33 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=85.1
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCcc
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNE 237 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~ 237 (412)
+..+|+|+|.|.|. +...|+.+ +| ..++|+++. +...++.+.+++. -..+| +. .+++++..
T Consensus 34 ~~~~vLDlG~G~G~----~~~~l~~~--~~--~~~~~~~D~-~~~~~~~~~~~~~-------~~~~~--~~-~d~~~~~~ 94 (240)
T TIGR02072 34 IPASVLDIGCGTGY----LTRALLKR--FP--QAEFIALDI-SAGMLAQAKTKLS-------ENVQF--IC-GDAEKLPL 94 (240)
T ss_pred CCCeEEEECCCccH----HHHHHHHh--CC--CCcEEEEeC-hHHHHHHHHHhcC-------CCCeE--Ee-cchhhCCC
Confidence 34689999999996 33444444 33 377999987 4444444444332 12223 32 23333221
Q ss_pred ccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEeecCcCCCCchHHHHHHHHHHHHHHHHHhhhhcCCC
Q 048129 238 DKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARC 316 (412)
Q Consensus 238 ~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E~ea~~n~~~F~~RF~eaL~~YsalFdsLda~~~~~ 316 (412)
.-..-+.|+.+..+. .......+|+.+ +.|+|.-+++...-.. ..+ ....+. ++.....+.
T Consensus 95 ---~~~~fD~vi~~~~l~--~~~~~~~~l~~~~~~L~~~G~l~~~~~~~---~~~-~~~~~~-------~~~~~~~~~-- 156 (240)
T TIGR02072 95 ---EDSSFDLIVSNLALQ--WCDDLSQALSELARVLKPGGLLAFSTFGP---GTL-HELRQS-------FGQHGLRYL-- 156 (240)
T ss_pred ---CCCceeEEEEhhhhh--hccCHHHHHHHHHHHcCCCcEEEEEeCCc---cCH-HHHHHH-------HHHhccCCC--
Confidence 111224444443332 222344566665 5689988777653221 111 111111 111111111
Q ss_pred CHHHHHHHHHHHhHHHHHhHhhccccccccccchhHHHHHHHhCCCeeecCCcchHHHHHHHHHHcC
Q 048129 317 DPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFA 383 (412)
Q Consensus 317 ~~~R~~iE~~~lg~eI~niVa~eG~~R~eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~ 383 (412)
+ ...++.. +... -..+-.+...=.-+.......-+.+...|....+...-.....+.+++.|.
T Consensus 157 ~--~~~~~~~-l~~~-f~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 219 (240)
T TIGR02072 157 S--LDELKAL-LKNS-FELLTLEEELITLSFDDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYE 219 (240)
T ss_pred C--HHHHHHH-HHHh-cCCcEEEEEEEEEeCCCHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHH
Confidence 1 2222322 3332 122211111101123344556667778888776665445566777777764
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=79.19 E-value=24 Score=33.69 Aligned_cols=111 Identities=17% Similarity=0.287 Sum_probs=61.6
Q ss_pred hHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEE
Q 048129 147 TQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKI 226 (412)
Q Consensus 147 NqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~ 226 (412)
+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. | ..++|||+. +...++.+.+++ -..+|..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~--~--~~~v~gvD~-s~~~i~~a~~~~--------~~~~~~~ 82 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGN----STELLVERW--P--AARITGIDS-SPAMLAEARSRL--------PDCQFVE 82 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC--C--CCEEEEEEC-CHHHHHHHHHhC--------CCCeEEE
Confidence 4566666655556789999999883 345666553 2 268999987 444454444332 1233433
Q ss_pred eecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEee
Q 048129 227 VLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEV 282 (412)
Q Consensus 227 v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E~ 282 (412)
. +.+++.++ .+=+.++.|..++- .++....+-+..+.|+|.-.+++..
T Consensus 83 ~---d~~~~~~~----~~fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 83 A---DIASWQPP----QALDLIFANASLQW-LPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred C---chhccCCC----CCccEEEEccChhh-CCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 2 22222211 12245555554432 2233333444447889999888764
No 29
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=78.73 E-value=8.3 Score=37.11 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=70.6
Q ss_pred hhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCC
Q 048129 153 RVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTET 232 (412)
Q Consensus 153 A~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~ 232 (412)
-+.-+.---|+|+|.|-|.+= +-|+.|=.+ =.||||++ +.+-++++.+| ..+.+|..-. +
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsT----elL~~RwP~----A~i~GiDs-S~~Mla~Aa~r--------lp~~~f~~aD---l 84 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNST----ELLARRWPD----AVITGIDS-SPAMLAKAAQR--------LPDATFEEAD---L 84 (257)
T ss_pred hCCccccceeeecCCCCCHHH----HHHHHhCCC----CeEeeccC-CHHHHHHHHHh--------CCCCceeccc---H
Confidence 344455667999999999764 667777533 45999987 55655555444 3444444322 2
Q ss_pred CCCccccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEeecCcCCCC
Q 048129 233 KDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQ 289 (412)
Q Consensus 233 e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E~ea~~n~~ 289 (412)
.+.+++ .+-..|.-|.+|+- .|+..+.|-+.+-.|.|.-+.-|-.-.|+..|
T Consensus 85 ~~w~p~----~~~dllfaNAvlqW-lpdH~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 85 RTWKPE----QPTDLLFANAVLQW-LPDHPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred hhcCCC----Cccchhhhhhhhhh-ccccHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 222221 23356666777765 34444557778888999999888777776655
No 30
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=78.56 E-value=67 Score=31.13 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=110.7
Q ss_pred CchhhHH-HHHhhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHH
Q 048129 136 SSFYQAT-LFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYF 214 (412)
Q Consensus 136 sP~~~fa-~~taNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~f 214 (412)
.+++.|+ |.+=+++..+.+.-.+--+|+|.+.|-|-. .-.|+..-| .-+|||+|. +..-|+.+.+|+.+
T Consensus 28 n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~----a~~~~k~~g----~g~v~~~D~-s~~ML~~a~~k~~~- 97 (238)
T COG2226 28 NDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDM----ALLLAKSVG----TGEVVGLDI-SESMLEVAREKLKK- 97 (238)
T ss_pred cccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHH----HHHHHHhcC----CceEEEEEC-CHHHHHHHHHHhhc-
Confidence 4555555 355666666665534789999999998842 334444443 378999997 66667777766544
Q ss_pred HHhcCCc-EEEEEeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEeecCcCCCCchH
Q 048129 215 AETWNLP-FSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIEVEANHNSQNFE 292 (412)
Q Consensus 215 A~~lgv~-Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E~ea~~n~~~F~ 292 (412)
.|+. ++|.. .+.++| ...++-.=+|.+.|.|..-...+.+|+-+ |=|+|...++|-.=.....+.|
T Consensus 98 ---~~~~~i~fv~---~dAe~L-----Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~- 165 (238)
T COG2226 98 ---KGVQNVEFVV---GDAENL-----PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVL- 165 (238)
T ss_pred ---cCccceEEEE---echhhC-----CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhh-
Confidence 3333 34433 233333 34455555777788885555666677655 7799999777755555544433
Q ss_pred HHHHHHHH-HHHH-HHHHhhhhcCCCCHHHHHHHHHHHhHHHHHhHhhccccccccccchhHHHHHHHhCCCeeec
Q 048129 293 DRFFEVLF-HYSA-SFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAE 366 (412)
Q Consensus 293 ~RF~eaL~-~Ysa-lFdsLda~~~~~~~~R~~iE~~~lg~eI~niVa~eG~~R~eR~e~~~~W~~r~~~aGF~~~~ 366 (412)
...++ ||.. ++=.+......+..+.. ++-+-|... -+.+.-...|..+||..+.
T Consensus 166 ---~~~~~~~~~~~v~P~~g~~~~~~~~~y~-----yL~eSi~~~------------p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 166 ---RKAYILYYFKYVLPLIGKLVAKDAEAYE-----YLAESIRRF------------PDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred ---HHHHHHHHHHhHhhhhceeeecChHHHH-----HHHHHHHhC------------CCHHHHHHHHHhcCceEEe
Confidence 33333 4444 55555554433333322 333344433 3344556677889998764
No 31
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=76.21 E-value=15 Score=35.74 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=37.7
Q ss_pred cCCeeEEEecccCCccchHHHHHHHHhCCC-CCCceEEEEEecCCChHHHHHHHHH
Q 048129 156 SAKRIHLIDLAIRSGSHCIVLMQALATRQE-CPVELLKITAVGSSSKQRMEETGKR 210 (412)
Q Consensus 156 g~~~vHIID~~i~~G~QWp~LiqaLa~R~~-gpp~~LrIT~I~~~~~~~l~~tg~r 210 (412)
..+.++|.|.|.+.|--.-+|--.|++..+ .+....+|||++. +...++.+.+.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di-s~~~L~~Ar~~ 151 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI-DLKALEKARAG 151 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC-CHHHHHHHHcC
Confidence 345699999999999887777666665421 1112489999987 55667666554
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=75.14 E-value=30 Score=33.16 Aligned_cols=112 Identities=8% Similarity=0.109 Sum_probs=60.4
Q ss_pred HHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 048129 149 AIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVL 228 (412)
Q Consensus 149 aIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~ 228 (412)
.|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|+|+. +...++.+.+++ +..|+.-....+.
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g----~~v~~vD~-s~~~l~~a~~~~----~~~g~~~~v~~~~ 99 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G----HQVILCDL-SAEMIQRAKQAA----EAKGVSDNMQFIH 99 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C----CEEEEEEC-CHHHHHHHHHHH----HhcCCccceEEEE
Confidence 4666665 345699999999994 45666665 2 36899987 555566555444 3445543333332
Q ss_pred cCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEE
Q 048129 229 VTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVII 280 (412)
Q Consensus 229 ~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~ 280 (412)
.+..++.+. .-..=+.|+.+..+. ..+++...+-...+-|+|.-.+++
T Consensus 100 -~d~~~l~~~--~~~~fD~V~~~~vl~-~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 100 -CAAQDIAQH--LETPVDLILFHAVLE-WVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred -cCHHHHhhh--cCCCCCEEEehhHHH-hhCCHHHHHHHHHHHcCCCeEEEE
Confidence 233333211 011223444433332 123333334444578999988765
No 33
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=74.69 E-value=28 Score=36.04 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=66.1
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
..+++.+.....=+|+|+|.|.|. +--.|+.+. | ..+||+|+. +...++.+.+++......-.-.++|..-
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~--P--~~~V~~vD~-S~~Av~~A~~N~~~n~~~~~~~v~~~~~ 288 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN--P--QAKVVFVDE-SPMAVASSRLNVETNMPEALDRCEFMIN 288 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC--C--CCEEEEEEC-CHHHHHHHHHHHHHcCcccCceEEEEEc
Confidence 445555543222379999999996 344566553 3 489999987 5566666666654332110113344321
Q ss_pred ecCCCCCCccccccCCCCceEEEeeccccC--CC-CchHHHHH-HHHhcCCCEEEEEee
Q 048129 228 LVTETKDLNEDKFDLNAGEAVAVYSPILLS--RT-RHPDFLIK-MLRKISPCVMVIIEV 282 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~E~laVn~~~~L~--~~-~~~~~~L~-~vr~L~P~vvvl~E~ 282 (412)
+..+++.. ..=+.|+.|-+|+-. .. .....+++ .-+.|+|.-.+.++.
T Consensus 289 --D~l~~~~~-----~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 289 --NALSGVEP-----FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred --cccccCCC-----CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 21222211 122678888888752 11 12234444 446889998888774
No 34
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=74.66 E-value=37 Score=32.44 Aligned_cols=109 Identities=20% Similarity=0.307 Sum_probs=62.7
Q ss_pred HHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 048129 149 AIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVL 228 (412)
Q Consensus 149 aIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~ 228 (412)
.+++.+.-...-+|+|+|.|.|. +...|+.+. | ..++|||+. +...++. |+..++.| ..
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~--p--~~~v~gvD~-s~~~~~~--------a~~~~~~~--~~-- 78 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW--P--GAVIEALDS-SPEMVAA--------ARERGVDA--RT-- 78 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC--C--CCEEEEEEC-CHHHHHH--------HHhcCCcE--EE--
Confidence 46666654555789999999983 556777663 2 267999987 4443433 33345543 22
Q ss_pred cCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHH-HHhcCCCEEEEEeecCc
Q 048129 229 VTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKM-LRKISPCVMVIIEVEAN 285 (412)
Q Consensus 229 ~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~-vr~L~P~vvvl~E~ea~ 285 (412)
.+.+++.+ ...=+.|+.|..++. .+++ ..+|+. .+.|+|.-.+++....+
T Consensus 79 -~d~~~~~~----~~~fD~v~~~~~l~~-~~d~-~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 79 -GDVRDWKP----KPDTDVVVSNAALQW-VPEH-ADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred -cChhhCCC----CCCceEEEEehhhhh-CCCH-HHHHHHHHHhCCCCcEEEEEcCCC
Confidence 22333321 112356666665543 2333 445554 57899998877764333
No 35
>PRK05785 hypothetical protein; Provisional
Probab=74.38 E-value=73 Score=30.15 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=49.9
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccc
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNED 238 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~ 238 (412)
.-.|+|+|.|.|.- ...|+.+.+ .++|||+. +.+.++.+.++ + + + +. .+.+++.
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~-----~~v~gvD~-S~~Ml~~a~~~--------~-~--~--~~-~d~~~lp-- 105 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK-----YYVVALDY-AENMLKMNLVA--------D-D--K--VV-GSFEALP-- 105 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC-----CEEEEECC-CHHHHHHHHhc--------c-c--e--EE-echhhCC--
Confidence 45799999999944 344555531 47999987 55555544322 1 1 1 22 2333332
Q ss_pred cccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEee
Q 048129 239 KFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIEV 282 (412)
Q Consensus 239 ~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E~ 282 (412)
..++..=+|-+.+.|..-...+.+|+.+ |-|+|.+ +++|-
T Consensus 106 ---~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~-~ile~ 146 (226)
T PRK05785 106 ---FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV-GFIAM 146 (226)
T ss_pred ---CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce-EEEEe
Confidence 2233233333444553334455666666 7789954 34443
No 36
>PRK08317 hypothetical protein; Provisional
Probab=74.31 E-value=71 Score=29.26 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=55.2
Q ss_pred HHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeec
Q 048129 150 IIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLV 229 (412)
Q Consensus 150 IleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~ 229 (412)
+++.+.-...-+|+|+|.|.|. | ...++.+- + | .-++|+|+. +...++.+.++ ....+...+|....
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~---~~~~a~~~-~-~-~~~v~~~d~-~~~~~~~a~~~----~~~~~~~~~~~~~d- 77 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-D---ARELARRV-G-P-EGRVVGIDR-SEAMLALAKER----AAGLGPNVEFVRGD- 77 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-H---HHHHHHhc-C-C-CcEEEEEeC-CHHHHHHHHHH----hhCCCCceEEEecc-
Confidence 4555555556689999999874 3 33444443 2 3 368999987 43444444443 11123334443322
Q ss_pred CCCCCCccccccCCCCceEEEeeccccCCCCchHHHHH-HHHhcCCCEEEEEe
Q 048129 230 TETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIK-MLRKISPCVMVIIE 281 (412)
Q Consensus 230 ~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~-~vr~L~P~vvvl~E 281 (412)
..++. +.-..-+.|+.+..+. ..+++ ..+|+ ..+.|+|.-.++.+
T Consensus 78 --~~~~~---~~~~~~D~v~~~~~~~-~~~~~-~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 78 --ADGLP---FPDGSFDAVRSDRVLQ-HLEDP-ARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred --cccCC---CCCCCceEEEEechhh-ccCCH-HHHHHHHHHHhcCCcEEEEE
Confidence 22211 1111123333332221 22233 33444 44778999876653
No 37
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=73.99 E-value=67 Score=28.83 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=58.4
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccc
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKF 240 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l 240 (412)
.|+|+|.|.|. +...++.+ ++ ++|+|+. +...++.+.+++. ..++..+|... ++.+...
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~----~v~~vD~-s~~~~~~a~~~~~----~~~~~~~~~~~---d~~~~~~--- 80 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK----CILTTDI-NPFAVKELRENAK----LNNVGLDVVMT---DLFKGVR--- 80 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC----EEEEEEC-CHHHHHHHHHHHH----HcCCceEEEEc---ccccccC---
Confidence 49999999994 45566655 32 6999987 4455666655553 34554444322 2222111
Q ss_pred cCCCCceEEEeeccccCC-----CC--------------chHHHHHHH-HhcCCCEEEEEeecCcCC
Q 048129 241 DLNAGEAVAVYSPILLSR-----TR--------------HPDFLIKML-RKISPCVMVIIEVEANHN 287 (412)
Q Consensus 241 ~~~~~E~laVn~~~~L~~-----~~--------------~~~~~L~~v-r~L~P~vvvl~E~ea~~n 287 (412)
..=+.|+.|.++.... .+ ..+.+|+.+ +-|+|.-.+++......+
T Consensus 81 --~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~ 145 (179)
T TIGR00537 81 --GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG 145 (179)
T ss_pred --CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC
Confidence 1235777776664310 00 134566655 788997776665555444
No 38
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=73.90 E-value=81 Score=29.74 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=62.0
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
..++++..=...-+|||+|-|.|. +..+|+.+. | .+|+|..+.+ +.++.+.+ .=..+|.+-
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P-~l~~~v~Dlp--~v~~~~~~---------~~rv~~~~g 150 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---P-NLRATVFDLP--EVIEQAKE---------ADRVEFVPG 150 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---T-TSEEEEEE-H--HHHCCHHH---------TTTEEEEES
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---C-CCcceeeccH--hhhhcccc---------ccccccccc
Confidence 445555554445589999999993 445555553 3 5999999862 22322222 224555543
Q ss_pred ecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCC---EEEEEeecCcCC
Q 048129 228 LVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPC---VMVIIEVEANHN 287 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~---vvvl~E~ea~~n 287 (412)
.. . +.+.. .+++.+.-.++--.+.....+|+.+ ++|+|. .++++|.=.+..
T Consensus 151 d~--f-----~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 151 DF--F-----DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp -T--T-----TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred cH--H-----hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 21 1 11222 4566666666554455555677766 678876 666667654443
No 39
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=73.60 E-value=53 Score=30.72 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=61.1
Q ss_pred eEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCcccc
Q 048129 160 IHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDK 239 (412)
Q Consensus 160 vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~ 239 (412)
-.|+|++.|.|. --+.+|+.. . -++|+|+. +...++.+.+. ++.+|+. ....+. .+..+.-..
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~---a---~~V~~vE~-~~~a~~~a~~N----l~~~~~~-~v~~~~-~D~~~~l~~- 117 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRY---A---AGATLLEM-DRAVAQQLIKN----LATLKAG-NARVVN-TNALSFLAQ- 117 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcC---C---CEEEEEEC-CHHHHHHHHHH----HHHhCCC-cEEEEE-chHHHHHhh-
Confidence 378999998882 223455532 2 47999986 44444444443 3334543 223332 222111110
Q ss_pred ccCCCCceEEEeeccccCCCCchHHHHHHHHh---cCCCEEEEEeecCcCC
Q 048129 240 FDLNAGEAVAVYSPILLSRTRHPDFLIKMLRK---ISPCVMVIIEVEANHN 287 (412)
Q Consensus 240 l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~---L~P~vvvl~E~ea~~n 287 (412)
. ..+=+.|++|=++. .+-.+.+++.|.. |+|+-++++|.....+
T Consensus 118 ~-~~~fDlV~~DPPy~---~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 118 P-GTPHNVVFVDPPFR---KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred c-CCCceEEEECCCCC---CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 0 11236788877763 2445677888877 6999999999877654
No 40
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=73.17 E-value=19 Score=36.56 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=70.8
Q ss_pred HhhHHHHhhhhc----CCeeEEEecccCCcc---chHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHh
Q 048129 145 AGTQAIIERVAS----AKRIHLIDLAIRSGS---HCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAET 217 (412)
Q Consensus 145 taNqaIleA~~g----~~~vHIID~~i~~G~---QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~ 217 (412)
+-..-|-+.+.. ....+|+|++.|.|. -|. .. ++ =++.|||. +..+++++.+|..+.-+.
T Consensus 45 vKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~------~~---~i---~~~vg~Di-s~~si~ea~~Ry~~~~~~ 111 (331)
T PF03291_consen 45 VKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQ------KA---KI---KHYVGIDI-SEESIEEARERYKQLKKR 111 (331)
T ss_dssp HHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHH------HT---T----SEEEEEES--HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHH------hc---CC---CEEEEEeC-CHHHHHHHHHHHHHhccc
Confidence 333445555442 267999999999884 341 11 22 35788987 778899999998665533
Q ss_pred c---CCcEEEEE--eecCCCCCCccccccCCCCceEEEeecccc----CCCCchHHHHHHH-HhcCCCEEEEE-eecC
Q 048129 218 W---NLPFSFKI--VLVTETKDLNEDKFDLNAGEAVAVYSPILL----SRTRHPDFLIKML-RKISPCVMVII-EVEA 284 (412)
Q Consensus 218 l---gv~Fef~~--v~~~~~e~l~~~~l~~~~~E~laVn~~~~L----~~~~~~~~~L~~v-r~L~P~vvvl~-E~ea 284 (412)
. ...+.|.. +..+...+--.+.+.-.....=+|+|+|.| .+......+|+.| +.|+|--+.+. -.|+
T Consensus 112 ~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 112 NNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 2 23333333 322222211112222223467799999999 5555666777777 78899877664 3444
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=71.84 E-value=84 Score=29.04 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=56.6
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeecCCCCCCcc
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP-FSFKIVLVTETKDLNE 237 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~-Fef~~v~~~~~e~l~~ 237 (412)
.-.|+|+|.|.|.. ++ .++.+. | ..++|+|+. +...++.+. +.++..|++ ++|..- +.+++..
T Consensus 46 g~~VLDiGcGtG~~--al--~la~~~---~-~~~V~giD~-s~~~l~~A~----~~~~~~~l~~i~~~~~---d~~~~~~ 109 (187)
T PRK00107 46 GERVLDVGSGAGFP--GI--PLAIAR---P-ELKVTLVDS-LGKKIAFLR----EVAAELGLKNVTVVHG---RAEEFGQ 109 (187)
T ss_pred CCeEEEEcCCCCHH--HH--HHHHHC---C-CCeEEEEeC-cHHHHHHHH----HHHHHcCCCCEEEEec---cHhhCCC
Confidence 34799999998832 22 223222 2 368999987 444444443 344556664 455433 2333322
Q ss_pred ccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEee
Q 048129 238 DKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIEV 282 (412)
Q Consensus 238 ~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E~ 282 (412)
-.+-+.++.|+. ...+.+++.+ +.|+|.-.+++..
T Consensus 110 ----~~~fDlV~~~~~------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 110 ----EEKFDVVTSRAV------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ----CCCccEEEEccc------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 123456666642 3456677765 8999999888774
No 42
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=71.79 E-value=42 Score=33.02 Aligned_cols=113 Identities=13% Similarity=0.112 Sum_probs=64.4
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
..|+|.+.=+..=||+|+|.| |-+++..+|++.| .++|||.. +.+..+. ..+.++..|++=....+
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g-----~~v~gitl-S~~Q~~~----a~~~~~~~gl~~~v~v~ 117 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG-----CHVTGITL-SEEQAEY----ARERIREAGLEDRVEVR 117 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH-------EEEEEES--HHHHHH----HHHHHHCSTSSSTEEEE
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC-----cEEEEEEC-CHHHHHH----HHHHHHhcCCCCceEEE
Confidence 456666654555699999876 8889999999862 67999976 4443333 44455677877333333
Q ss_pred ecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEe
Q 048129 228 LVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIE 281 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E 281 (412)
. .+..++.. .=|-+|.|-+.-++ .+...+.|++.+ +-|+|.-..++.
T Consensus 118 ~-~D~~~~~~-----~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 118 L-QDYRDLPG-----KFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp E-S-GGG--------S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred E-eeccccCC-----CCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 23433332 22334444333333 234567888888 778999888764
No 43
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=71.55 E-value=60 Score=33.53 Aligned_cols=109 Identities=14% Similarity=0.238 Sum_probs=58.0
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
..|++.+.-...=+|+|+|.|.|. +...++.+.+ .++|||+. +...++.+.++. + ++..+|...
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g-----~~V~giDl-S~~~l~~A~~~~----~--~l~v~~~~~ 220 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG-----VSVVGVTI-SAEQQKLAQERC----A--GLPVEIRLQ 220 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC-----CEEEEEeC-CHHHHHHHHHHh----c--cCeEEEEEC
Confidence 345555543344589999998664 5556666542 47999987 555566555554 2 333443322
Q ss_pred ecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEe
Q 048129 228 LVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIE 281 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E 281 (412)
+..++. ..=+.|+-+-++.--.....+.+++.+ +-|+|.-.+++.
T Consensus 221 ---D~~~l~------~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 221 ---DYRDLN------GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred ---chhhcC------CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 222221 111344333333222223345566655 778998877764
No 44
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=69.74 E-value=45 Score=31.20 Aligned_cols=111 Identities=19% Similarity=0.202 Sum_probs=64.7
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
..+++|+.--+.-.++|+|.|.|.-= --||.+ | ..+|+++. +.. .-++|.+.|+.-+++.+....
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRNa----lyLA~~--G----~~VtAvD~-s~~----al~~l~~~a~~~~l~i~~~~~ 84 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRNA----LYLASQ--G----FDVTAVDI-SPV----ALEKLQRLAEEEGLDIRTRVA 84 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHHH----HHHHHT--T-----EEEEEES-SHH----HHHHHHHHHHHTT-TEEEEE-
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHHH----HHHHHC--C----CeEEEEEC-CHH----HHHHHHHHHhhcCceeEEEEe
Confidence 34667776556668999999998421 236666 2 77999987 433 345678889999999777665
Q ss_pred ecCCCCCCccccccCCCCceEEEe-eccccCCCCchHHHHHHHH-hcCCCEEEEEe
Q 048129 228 LVTETKDLNEDKFDLNAGEAVAVY-SPILLSRTRHPDFLIKMLR-KISPCVMVIIE 281 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~E~laVn-~~~~L~~~~~~~~~L~~vr-~L~P~vvvl~E 281 (412)
. +++...+ ..-+ ++|+ .++..-.+..++.+++.++ .++|--+.+.+
T Consensus 85 D---l~~~~~~----~~yD-~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 85 D---LNDFDFP----EEYD-FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp B---GCCBS-T----TTEE-EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred c---chhcccc----CCcC-EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 4 3222211 1112 3332 2444445667788888875 57997665543
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=69.50 E-value=54 Score=29.99 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=52.8
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeecCCCCCCcc
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP-FSFKIVLVTETKDLNE 237 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~-Fef~~v~~~~~e~l~~ 237 (412)
.-+|+|+|.|.|.- ++. |+.. +| ..++|+|+. +...++.+ .+.++..|++ ++| +. .+.+++..
T Consensus 43 ~~~vLDiGcGtG~~--s~~--la~~--~~--~~~V~~iD~-s~~~~~~a----~~~~~~~~~~~i~~--i~-~d~~~~~~ 106 (181)
T TIGR00138 43 GKKVIDIGSGAGFP--GIP--LAIA--RP--ELKLTLLES-NHKKVAFL----REVKAELGLNNVEI--VN-GRAEDFQH 106 (181)
T ss_pred CCeEEEecCCCCcc--HHH--HHHH--CC--CCeEEEEeC-cHHHHHHH----HHHHHHhCCCCeEE--Ee-cchhhccc
Confidence 34899999998832 221 2222 22 367999987 43333333 3344556664 444 33 33444321
Q ss_pred ccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEe
Q 048129 238 DKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIE 281 (412)
Q Consensus 238 ~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E 281 (412)
..+=+.|+.|+ + ...+.+++.+ +-|+|.-.+++.
T Consensus 107 ----~~~fD~I~s~~---~---~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 ----EEQFDVITSRA---L---ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ----cCCccEEEehh---h---hCHHHHHHHHHHhcCCCCEEEEE
Confidence 11224665555 2 2344566665 558999988876
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=68.70 E-value=87 Score=32.86 Aligned_cols=113 Identities=8% Similarity=0.142 Sum_probs=57.4
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
..|++.+.....-+|+|+|.|.|.-- ..|+.+. -++|||+. +...++...+ + . ...-..+|...
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~~------~~v~giD~-s~~~l~~a~~-~---~-~~~~~i~~~~~ 90 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKKA------GQVIALDF-IESVIKKNES-I---N-GHYKNVKFMCA 90 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhhC------CEEEEEeC-CHHHHHHHHH-H---h-ccCCceEEEEe
Confidence 45566665444458999999999544 4455442 16899987 4444443221 1 1 11112333322
Q ss_pred ecCCCCCCccccccCCCC--ceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEee
Q 048129 228 LVTETKDLNEDKFDLNAG--EAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIEV 282 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~--E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E~ 282 (412)
+..+. .+...++ +.|+.|..+.--....+..+|+.+ |.|+|.-.++...
T Consensus 91 ---d~~~~---~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 91 ---DVTSP---DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ---ccccc---ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 12111 1112222 445544443322333356677766 5589998877643
No 47
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=68.18 E-value=76 Score=28.25 Aligned_cols=109 Identities=15% Similarity=0.207 Sum_probs=57.7
Q ss_pred HHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 048129 149 AIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVL 228 (412)
Q Consensus 149 aIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~ 228 (412)
.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+. +...++.+.+++.. .+ .++ .+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~-----~~v~~vE~-~~~~~~~~~~~~~~----~~-~v~--ii~ 65 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A-----ARVTAIEI-DPRLAPRLREKFAA----AD-NLT--VIH 65 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C-----CeEEEEEC-CHHHHHHHHHHhcc----CC-CEE--EEE
Confidence 45665553334489999999886 55556666 2 36999987 44445555444422 11 233 333
Q ss_pred cCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHHHh--cCCCEEEEEeec
Q 048129 229 VTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRK--ISPCVMVIIEVE 283 (412)
Q Consensus 229 ~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~--L~P~vvvl~E~e 283 (412)
.+..++.... ..-..|+-|.++... -+.+.+.++. +.+..+++++.|
T Consensus 66 -~D~~~~~~~~---~~~d~vi~n~Py~~~----~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 66 -GDALKFDLPK---LQPYKVVGNLPYNIS----TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred -CchhcCCccc---cCCCEEEECCCcccH----HHHHHHHHhcCCCcceEEEEEEHH
Confidence 3333332211 112466667776542 1223333433 337777777776
No 48
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=68.11 E-value=69 Score=30.79 Aligned_cols=100 Identities=17% Similarity=0.251 Sum_probs=53.4
Q ss_pred eEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeecCCCCCCccc
Q 048129 160 IHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP-FSFKIVLVTETKDLNED 238 (412)
Q Consensus 160 vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~-Fef~~v~~~~~e~l~~~ 238 (412)
=+|+|+|.|.|.--. .++... |+ .-+||+|+. +...++.+.++. +..|++ .+|.. .+++++.
T Consensus 79 ~~VLDiG~G~G~~~~----~~a~~~-g~--~~~v~gvD~-s~~~l~~A~~~~----~~~g~~~v~~~~---~d~~~l~-- 141 (272)
T PRK11873 79 ETVLDLGSGGGFDCF----LAARRV-GP--TGKVIGVDM-TPEMLAKARANA----RKAGYTNVEFRL---GEIEALP-- 141 (272)
T ss_pred CEEEEeCCCCCHHHH----HHHHHh-CC--CCEEEEECC-CHHHHHHHHHHH----HHcCCCCEEEEE---cchhhCC--
Confidence 489999998874221 122222 33 368999987 444455554433 344543 33322 2343332
Q ss_pred cccCCCC--ceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEE
Q 048129 239 KFDLNAG--EAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVII 280 (412)
Q Consensus 239 ~l~~~~~--E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~ 280 (412)
..++ +.|+.|+.+.+ .++....+=...|-|+|.-.+++
T Consensus 142 ---~~~~~fD~Vi~~~v~~~-~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 142 ---VADNSVDVIISNCVINL-SPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred ---CCCCceeEEEEcCcccC-CCCHHHHHHHHHHHcCCCcEEEE
Confidence 1222 45666777665 23333334445688999866654
No 49
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=65.97 E-value=94 Score=27.82 Aligned_cols=118 Identities=22% Similarity=0.249 Sum_probs=64.7
Q ss_pred hhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEE
Q 048129 146 GTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFK 225 (412)
Q Consensus 146 aNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~ 225 (412)
+...+++.+...+.=+|+|+|.|.|.-= -.|+.+ +| ..++|+++. +...++.+.+. ++..+++- .+
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~----~~la~~--~~--~~~v~~vDi-~~~a~~~a~~n----~~~n~~~~-v~ 84 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVIS----LALAKR--GP--DAKVTAVDI-NPDALELAKRN----AERNGLEN-VE 84 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHH----HHHHHT--ST--CEEEEEEES-BHHHHHHHHHH----HHHTTCTT-EE
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHH----HHHHHh--CC--CCEEEEEcC-CHHHHHHHHHH----HHhcCccc-cc
Confidence 4456667776556677999999988422 234444 33 488999987 44555555444 44556663 44
Q ss_pred EeecCCCCCCccccccCCCCceEEEeeccccCCC---CchHHHH-HHHHhcCCCEEEEEee
Q 048129 226 IVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRT---RHPDFLI-KMLRKISPCVMVIIEV 282 (412)
Q Consensus 226 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~---~~~~~~L-~~vr~L~P~vvvl~E~ 282 (412)
.+..+-.+.+.. ..=+.++.|-++.-... ...+.++ ..-+-|+|.-......
T Consensus 85 ~~~~d~~~~~~~-----~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 85 VVQSDLFEALPD-----GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp EEESSTTTTCCT-----TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccc-----cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 443222233321 22267788877544222 1234444 3457789988765433
No 50
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=65.15 E-value=21 Score=31.16 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=27.5
Q ss_pred hhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCC
Q 048129 154 VASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSS 199 (412)
Q Consensus 154 ~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~ 199 (412)
-...+..+|||+|-|.|.==..|-..|... . | .++|++|+..
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~--~-~-~~~v~~iD~~ 62 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS--S-P-NLRVLGIDCN 62 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc--C-C-CCeEEEEECC
Confidence 345788999999999984332233333322 2 3 4999999873
No 51
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=63.74 E-value=1.3e+02 Score=28.07 Aligned_cols=104 Identities=13% Similarity=0.238 Sum_probs=52.6
Q ss_pred cCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 048129 156 SAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDL 235 (412)
Q Consensus 156 g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l 235 (412)
..+..+|+|+|.|.|. +...++.+ + .++|+|+. +...++.+.+++ ...+...+|.... ..++
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~--~----~~v~~iD~-s~~~~~~a~~~~----~~~~~~~~~~~~~---~~~~ 107 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL--G----ADVTGIDA-SEENIEVARLHA----LESGLKIDYRQTT---AEEL 107 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc--C----CeEEEEcC-CHHHHHHHHHHH----HHcCCceEEEecC---HHHh
Confidence 3456789999999875 33344443 2 35899987 444455454443 2345555554432 2222
Q ss_pred ccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEe
Q 048129 236 NEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIE 281 (412)
Q Consensus 236 ~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E 281 (412)
... .-..-+.|+.+ .-+........+|+.+ +.|+|.-.+++.
T Consensus 108 ~~~--~~~~fD~Ii~~--~~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 108 AAE--HPGQFDVVTCM--EMLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred hhh--cCCCccEEEEh--hHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 110 00112333332 2232222334555554 677898766654
No 52
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=63.70 E-value=96 Score=28.22 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=27.5
Q ss_pred HHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHH
Q 048129 149 AIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRME 205 (412)
Q Consensus 149 aIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~ 205 (412)
.|.+.+... -+|+|+|.|.|. +...|+.+. + .+++||+. +...++
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~-~----~~~~giD~-s~~~i~ 50 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEK-Q----VRGYGIEI-DQDGVL 50 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhcc-C----CcEEEEeC-CHHHHH
Confidence 344444422 379999999995 456676553 1 34689986 433333
No 53
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=63.03 E-value=15 Score=25.66 Aligned_cols=35 Identities=14% Similarity=0.394 Sum_probs=24.6
Q ss_pred ceEEEeeccc---cCCCCchHHHHHHHHhcCCCEEEEE
Q 048129 246 EAVAVYSPIL---LSRTRHPDFLIKMLRKISPCVMVII 280 (412)
Q Consensus 246 E~laVn~~~~---L~~~~~~~~~L~~vr~L~P~vvvl~ 280 (412)
|.+-|||... ++....++.+++.|+.++|+-++++
T Consensus 1 e~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 3455665433 3666788899999999999999987
No 54
>PLN02244 tocopherol O-methyltransferase
Probab=62.60 E-value=1.8e+02 Score=29.36 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=51.9
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc--EEEEEeecCCCCCC
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP--FSFKIVLVTETKDL 235 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~--Fef~~v~~~~~e~l 235 (412)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+. +...++.+. +.++..|+. .+|..- +..++
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g-----~~v~gvD~-s~~~i~~a~----~~~~~~g~~~~v~~~~~---D~~~~ 180 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG-----ANVKGITL-SPVQAARAN----ALAAAQGLSDKVSFQVA---DALNQ 180 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC-----CEEEEEEC-CHHHHHHHH----HHHHhcCCCCceEEEEc---CcccC
Confidence 34579999999885 4556776542 47999987 433343333 334444553 455432 22222
Q ss_pred ccccccCCCCceEEEeecccc-CCCCchHHHHH-HHHhcCCCEEEEE
Q 048129 236 NEDKFDLNAGEAVAVYSPILL-SRTRHPDFLIK-MLRKISPCVMVII 280 (412)
Q Consensus 236 ~~~~l~~~~~E~laVn~~~~L-~~~~~~~~~L~-~vr~L~P~vvvl~ 280 (412)
. ..++..=+|-|...+ ..++ ...+|+ ..|-|+|.-.+++
T Consensus 181 ~-----~~~~~FD~V~s~~~~~h~~d-~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 181 P-----FEDGQFDLVWSMESGEHMPD-KRKFVQELARVAAPGGRIII 221 (340)
T ss_pred C-----CCCCCccEEEECCchhccCC-HHHHHHHHHHHcCCCcEEEE
Confidence 1 122222222233333 2233 345555 4588999765554
No 55
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=62.52 E-value=26 Score=34.05 Aligned_cols=100 Identities=17% Similarity=0.266 Sum_probs=64.4
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCcc
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNE 237 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~ 237 (412)
...-|.|+|.|-| .|-+.||+. | ..+|||+. +...++.+. ..|.+-|+..+|.... .+++..
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~--G----a~VtgiD~-se~~I~~Ak----~ha~e~gv~i~y~~~~---~edl~~ 120 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL--G----ASVTGIDA-SEKPIEVAK----LHALESGVNIDYRQAT---VEDLAS 120 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC--C----CeeEEecC-ChHHHHHHH----Hhhhhccccccchhhh---HHHHHh
Confidence 4678999999988 788888866 3 67999986 444444333 3566778888888764 344443
Q ss_pred ccccCCCCceEEEeecccc-CCCCchHHHHHHHHhcCCCEEEEE
Q 048129 238 DKFDLNAGEAVAVYSPILL-SRTRHPDFLIKMLRKISPCVMVII 280 (412)
Q Consensus 238 ~~l~~~~~E~laVn~~~~L-~~~~~~~~~L~~vr~L~P~vvvl~ 280 (412)
.. +-.=||-|+==| .-+++..-+....+-++|.-+++.
T Consensus 121 ~~-----~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 121 AG-----GQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL 159 (243)
T ss_pred cC-----CCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEE
Confidence 21 223345555555 556666545556678899866653
No 56
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=62.01 E-value=37 Score=26.04 Aligned_cols=93 Identities=18% Similarity=0.333 Sum_probs=45.5
Q ss_pred EecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccccC
Q 048129 163 IDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDL 242 (412)
Q Consensus 163 ID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~ 242 (412)
+|+|.|.|.....|.+. + -.++|+++. +...++.+.++ .+..+++ |.. .+.+++ ..
T Consensus 1 LdiG~G~G~~~~~l~~~-------~--~~~v~~~D~-~~~~~~~~~~~----~~~~~~~--~~~---~d~~~l-----~~ 56 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-------G--GASVTGIDI-SEEMLEQARKR----LKNEGVS--FRQ---GDAEDL-----PF 56 (95)
T ss_dssp EEET-TTSHHHHHHHHT-------T--TCEEEEEES--HHHHHHHHHH----TTTSTEE--EEE---SBTTSS-----SS
T ss_pred CEecCcCCHHHHHHHhc-------c--CCEEEEEeC-CHHHHHHHHhc----ccccCch--hee---ehHHhC-----cc
Confidence 58888888766555544 2 278999987 44444443333 3334444 222 223333 23
Q ss_pred CCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEE
Q 048129 243 NAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVI 279 (412)
Q Consensus 243 ~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl 279 (412)
.++-.=+|-+...+..-.....+++.+ |-|+|.-..+
T Consensus 57 ~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 57 PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccccccceeeccCHHHHHHHHHHHcCcCeEEe
Confidence 333332333333331114555555555 7788876654
No 57
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=60.82 E-value=96 Score=28.64 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=52.3
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccc
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKF 240 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l 240 (412)
+|+|+|.|.|. +...++.+. | ..++||++. +...++.+.+++ +..|+.-....+. .+..+...+
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~--~--~~~v~gid~-s~~~~~~a~~~~----~~~gl~~~i~~~~-~d~~~~~~~-- 65 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH--P--HLQLHGYTI-SPEQAEVGRERI----RALGLQGRIRIFY-RDSAKDPFP-- 65 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC--C--CCEEEEEEC-CHHHHHHHHHHH----HhcCCCcceEEEe-cccccCCCC--
Confidence 68999998775 345566553 2 268999987 545455555443 3445544333332 122111110
Q ss_pred cCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEE
Q 048129 241 DLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVII 280 (412)
Q Consensus 241 ~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~ 280 (412)
..=+.|+.+.++. .. ...+.+|+.+ +.|+|.-.+++
T Consensus 66 --~~fD~I~~~~~l~-~~-~~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 66 --DTYDLVFGFEVIH-HI-KDKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred --CCCCEeehHHHHH-hC-CCHHHHHHHHHHHcCCCCEEEE
Confidence 1113333322222 12 2345677777 66899977665
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=58.10 E-value=38 Score=33.73 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=63.6
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
..|++-+.=+.--||.|+|.| |-+|+.-.|.+.| +++|||+. |....+.+.+| ++..|++=..+.+
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~-----v~V~GvTl-S~~Q~~~~~~r----~~~~gl~~~v~v~ 127 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG-----VTVVGVTL-SEEQLAYAEKR----IAARGLEDNVEVR 127 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC-----CEEEEeeC-CHHHHHHHHHH----HHHcCCCcccEEE
Confidence 444444444667899999876 8899999999862 77999986 54444444433 4556666223333
Q ss_pred ecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHHHh-cCCCEEEE
Q 048129 228 LVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRK-ISPCVMVI 279 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~-L~P~vvvl 279 (412)
. .++.++... + |-.|.|= +|.=-....-+.|++.+++ |+|+-..+
T Consensus 128 l-~d~rd~~e~-f----DrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 128 L-QDYRDFEEP-F----DRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred e-ccccccccc-c----ceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEE
Confidence 2 345555432 1 2222221 1111233456788888855 56765444
No 59
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=56.24 E-value=27 Score=28.27 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=57.4
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccc
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKF 240 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l 240 (412)
+|+|+|.|.|.- ...|+.+. | ..++|||+. +...++.+.++..+.. .+-..+|..- ++ ....+.
T Consensus 4 ~vLDlGcG~G~~----~~~l~~~~---~-~~~v~gvD~-s~~~~~~a~~~~~~~~--~~~~i~~~~~---d~-~~~~~~- 67 (112)
T PF12847_consen 4 RVLDLGCGTGRL----SIALARLF---P-GARVVGVDI-SPEMLEIARERAAEEG--LSDRITFVQG---DA-EFDPDF- 67 (112)
T ss_dssp EEEEETTTTSHH----HHHHHHHH---T-TSEEEEEES-SHHHHHHHHHHHHHTT--TTTTEEEEES---CC-HGGTTT-
T ss_pred EEEEEcCcCCHH----HHHHHhcC---C-CCEEEEEeC-CHHHHHHHHHHHHhcC--CCCCeEEEEC---cc-ccCccc-
Confidence 689999998854 33444421 1 377999997 6566777777764422 3334444442 22 111111
Q ss_pred cCCCCceEEEeecccc----CCCCchHHHHHHH-HhcCCCEEEEEe
Q 048129 241 DLNAGEAVAVYSPILL----SRTRHPDFLIKML-RKISPCVMVIIE 281 (412)
Q Consensus 241 ~~~~~E~laVn~~~~L----~~~~~~~~~L~~v-r~L~P~vvvl~E 281 (412)
..+=+.++.+. +.+ .. ..+..+|+.+ +.|+|.-.++++
T Consensus 68 -~~~~D~v~~~~-~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 68 -LEPFDLVICSG-FTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp -SSCEEEEEECS-GSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCCCEEEECC-Cccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 11224555555 322 12 4456677766 688998888775
No 60
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=55.26 E-value=2.1e+02 Score=27.79 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=56.1
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccc
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKF 240 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l 240 (412)
+|+|+|.|.|. +...+..++ + .-++|+|+. +...++.+.+.+......+.-+ .++.+..+-.+-+.. .
T Consensus 75 ~VL~iG~G~G~----~~~~ll~~~---~-~~~v~~vei-d~~vi~~a~~~~~~~~~~~~~~-~v~i~~~D~~~~l~~--~ 142 (270)
T TIGR00417 75 HVLVIGGGDGG----VLREVLKHK---S-VEKATLVDI-DEKVIELSKKFLPSLAGSYDDP-RVDLQIDDGFKFLAD--T 142 (270)
T ss_pred EEEEEcCCchH----HHHHHHhCC---C-cceEEEEeC-CHHHHHHHHHHhHhhcccccCC-ceEEEECchHHHHHh--C
Confidence 88999998886 344444443 2 257889876 4455566665554443222211 122222111111100 0
Q ss_pred cCCCCceEEEeeccccCCCCc--hHHHHHHH-HhcCCCEEEEEe
Q 048129 241 DLNAGEAVAVYSPILLSRTRH--PDFLIKML-RKISPCVMVIIE 281 (412)
Q Consensus 241 ~~~~~E~laVn~~~~L~~~~~--~~~~L~~v-r~L~P~vvvl~E 281 (412)
-..=+.|+++.......... ...+++.+ +.|+|.-++++.
T Consensus 143 -~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 -ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred -CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 12336777765533322222 35666655 679999998875
No 61
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=53.28 E-value=1.6e+02 Score=30.79 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=58.7
Q ss_pred CCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeecCCCCCC
Q 048129 157 AKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP-FSFKIVLVTETKDL 235 (412)
Q Consensus 157 ~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~-Fef~~v~~~~~e~l 235 (412)
...-+|+|+|.|.|. +--.||.+. -+++||+. +...++.+.+++ +..|+. .+|..- ++.+.
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~------~~V~gvD~-s~~al~~A~~n~----~~~~~~~v~~~~~---d~~~~ 357 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA------AEVVGVEG-VEAMVERARENA----RRNGLDNVTFYHA---NLEED 357 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC------CEEEEEeC-CHHHHHHHHHHH----HHcCCCceEEEEe---ChHHh
Confidence 344689999999995 333466552 36899987 556666655443 344543 444433 22221
Q ss_pred ccc-cccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEee
Q 048129 236 NED-KFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEV 282 (412)
Q Consensus 236 ~~~-~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E~ 282 (412)
... .+.-..-+.|++|-+. ...+.+++.+.+++|+-++.+.-
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr-----~g~~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPR-----AGAAEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred hhhhhhhcCCCCEEEECcCC-----cChHHHHHHHHhcCCCeEEEEEe
Confidence 110 0100112566665433 12456789999999999888754
No 62
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=53.14 E-value=38 Score=31.46 Aligned_cols=106 Identities=11% Similarity=0.166 Sum_probs=68.3
Q ss_pred CeeEEEecccC---CccchHHHHHHHHhCCCCCCceEEE------EEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 048129 158 KRIHLIDLAIR---SGSHCIVLMQALATRQECPVELLKI------TAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVL 228 (412)
Q Consensus 158 ~~vHIID~~i~---~G~QWp~LiqaLa~R~~gpp~~LrI------T~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~ 228 (412)
.+|+||.|=-+ -+..=.++|.+|+.+. +.+ |+|.. ++....++.-+..|+++.+..|-|.++.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~------~~~~~y~~t~~IN~--dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK------FPPVKYQTTTIINA--DDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcC------CCcccccceEEEEC--ccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 47999998755 3467779999997662 446 77764 3346678889999999999888877776
Q ss_pred cCCCCCCccccccCCC-Cce-EEEeecccc-------CCCCchHHHHHHHHhc
Q 048129 229 VTETKDLNEDKFDLNA-GEA-VAVYSPILL-------SRTRHPDFLIKMLRKI 272 (412)
Q Consensus 229 ~~~~e~l~~~~l~~~~-~E~-laVn~~~~L-------~~~~~~~~~L~~vr~L 272 (412)
.+. +......+++.. .++ ++||-.=.. -+....+.++..|++|
T Consensus 131 lD~-~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 131 LDD-KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred ECC-cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 543 222233455543 266 677765554 1223345566666554
No 63
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=52.65 E-value=19 Score=35.29 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=20.3
Q ss_pred hcCCeeEEEecccCCccchHHHHHHHHhCCCC
Q 048129 155 ASAKRIHLIDLAIRSGSHCIVLMQALATRQEC 186 (412)
Q Consensus 155 ~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~g 186 (412)
.|.+.|||||+ +.+ +. .+|+.+++..+.
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~~~ 77 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAYPG 77 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhCCC
Confidence 48999999999 555 66 667777665543
No 64
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=52.41 E-value=2e+02 Score=26.81 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=43.5
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCcc
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNE 237 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~ 237 (412)
+..+|+|+|.|.| .+...++.+. | ..++||++. +...++.+.++ ++..|++ ..+.+. .+..+.
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~-~~~v~~iD~-~~~~~~~a~~~----~~~~~~~-~~~~~~-~d~~~~-- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---P-DARVTAVDI-SPEALAVARKN----AARLGLD-NVTFLQ-SDWFEP-- 149 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---C-CCEEEEEEC-CHHHHHHHHHH----HHHcCCC-eEEEEE-Cchhcc--
Confidence 3468999999988 3444555442 2 368999987 44445544443 3445665 223332 222111
Q ss_pred ccccCCCCceEEEeecccc
Q 048129 238 DKFDLNAGEAVAVYSPILL 256 (412)
Q Consensus 238 ~~l~~~~~E~laVn~~~~L 256 (412)
+.-..-+.|+.|-++..
T Consensus 150 --~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 150 --LPGGKFDLIVSNPPYIP 166 (251)
T ss_pred --CcCCceeEEEECCCCCc
Confidence 11123367777776653
No 65
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=52.05 E-value=2.4e+02 Score=28.85 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=57.4
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeecCCCCCCcccc
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP-FSFKIVLVTETKDLNEDK 239 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~-Fef~~v~~~~~e~l~~~~ 239 (412)
+|+|++.|.|. +--.||.+ + -+++||+. +...++.+.+++ +..|++ .+|.. .+.+++...
T Consensus 236 ~vLDL~cG~G~----~~l~la~~--~----~~v~~vE~-~~~av~~a~~N~----~~~~~~~~~~~~---~d~~~~~~~- 296 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP--D----TQLTGIEI-ESEAIACAQQSA----QMLGLDNLSFAA---LDSAKFATA- 296 (374)
T ss_pred EEEEccCCccH----HHHHHhhc--C----CeEEEEEC-CHHHHHHHHHHH----HHcCCCcEEEEE---CCHHHHHHh-
Confidence 78999998882 22334433 2 36999986 545565555443 445663 44433 223222111
Q ss_pred ccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEee
Q 048129 240 FDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEV 282 (412)
Q Consensus 240 l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E~ 282 (412)
+ ...-+.|++|=+. .+....+++.+.+++|+-+|.++-
T Consensus 297 ~-~~~~D~vi~DPPr----~G~~~~~l~~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 297 Q-MSAPELVLVNPPR----RGIGKELCDYLSQMAPKFILYSSC 334 (374)
T ss_pred c-CCCCCEEEECCCC----CCCcHHHHHHHHhcCCCeEEEEEe
Confidence 1 1123677777543 233467889999999998888774
No 66
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=50.26 E-value=2.1e+02 Score=26.35 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=51.3
Q ss_pred CCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCC--cEEEEEeecCCCCC
Q 048129 157 AKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNL--PFSFKIVLVTETKD 234 (412)
Q Consensus 157 ~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv--~Fef~~v~~~~~e~ 234 (412)
.+.-+|+|+|.|.|.- ...|+.+ + .++||++. +...++.+.++.. ..++ ..+|.... ++.
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~--~----~~v~~~D~-s~~~i~~a~~~~~----~~~~~~~i~~~~~d---~~~ 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARR--G----AKVVASDI-SPQMVEEARERAP----EAGLAGNITFEVGD---LES 123 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHc--C----CEEEEEEC-CHHHHHHHHHHHH----hcCCccCcEEEEcC---chh
Confidence 3456899999998853 3445544 2 23899987 5555665555543 2343 34444321 221
Q ss_pred CccccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEE
Q 048129 235 LNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVII 280 (412)
Q Consensus 235 l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~ 280 (412)
.. ..=+.++.+..+.--.......+++.+.++.+..+++.
T Consensus 124 ~~------~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 124 LL------GRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cc------CCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 11 11234444433311122345667777766544444443
No 67
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=49.68 E-value=4.8 Score=39.17 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=62.5
Q ss_pred CeeEEEecccCCccchHHHHHHHHh--CCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEee---cCCC
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALAT--RQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVL---VTET 232 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~--R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~---~~~~ 232 (412)
+.|||||+.=+ |+-|-.|+.- +-..-|. +|--|++. ..+.+-+.+||+..|.++--+--. ++++
T Consensus 36 ngihIIDL~kT----~~~l~~A~~~v~~~~~~~g--~ILfVgTK-----~~a~~~V~~~A~r~g~~yV~~RwLgG~LTN~ 104 (252)
T COG0052 36 NGIHIIDLQKT----LERLREAYKFLRRIAANGG--KILFVGTK-----KQAQEPVKEFAERTGAYYVNGRWLGGMLTNF 104 (252)
T ss_pred CCcEEEEHHHH----HHHHHHHHHHHHHHHcCCC--EEEEEech-----HHHHHHHHHHHHHhCCceecCcccCccccCc
Confidence 68999999754 7766666542 1111122 24455542 356778899999999987544321 2333
Q ss_pred CCCccc--cc---c-CCCCceEEEee---cccc-CCCCchHHHHHHHHhcC--CCEEEEEeecCcC
Q 048129 233 KDLNED--KF---D-LNAGEAVAVYS---PILL-SRTRHPDFLIKMLRKIS--PCVMVIIEVEANH 286 (412)
Q Consensus 233 e~l~~~--~l---~-~~~~E~laVn~---~~~L-~~~~~~~~~L~~vr~L~--P~vvvl~E~ea~~ 286 (412)
..++.+ .| . ...++ .-.-. .+.| .....++.+|.-||.|+ |++++++++..++
T Consensus 105 ~ti~~si~rl~~lE~~~~~~-~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e~ 169 (252)
T COG0052 105 KTIRKSIKRLKELEKMEEDG-FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEK 169 (252)
T ss_pred hhHHHHHHHHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEEEeCCcHhH
Confidence 322211 11 0 00111 00000 0111 22345677788888886 9999998876543
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=49.56 E-value=2.1e+02 Score=28.06 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=60.1
Q ss_pred HHHhhHHHHhhhh--cCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCC
Q 048129 143 LFAGTQAIIERVA--SAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNL 220 (412)
Q Consensus 143 ~~taNqaIleA~~--g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv 220 (412)
+..+.+..+++++ ....-.|+|+|.|.|. |..+++.. |+ -+++||+. +...++.+.+++ +..++
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~--g~---~~V~avDi-d~~al~~a~~n~----~~n~~ 207 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL--GA---AKVVGIDI-DPLAVESARKNA----ELNQV 207 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc--CC---CeEEEEEC-CHHHHHHHHHHH----HHcCC
Confidence 3445555666654 2234589999999884 33445543 22 37999987 445566665543 33455
Q ss_pred cEEEEEeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHH-HHhcCCCEEEEE
Q 048129 221 PFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKM-LRKISPCVMVII 280 (412)
Q Consensus 221 ~Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~-vr~L~P~vvvl~ 280 (412)
...+..+. .+.... . -.+=+.|+.|... ..+..++.. .+.|+|.-.++.
T Consensus 208 ~~~~~~~~-~~~~~~----~-~~~fDlVvan~~~-----~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 208 SDRLQVKL-IYLEQP----I-EGKADVIVANILA-----EVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred CcceEEEe-cccccc----c-CCCceEEEEecCH-----HHHHHHHHHHHHHcCCCcEEEE
Confidence 54443332 111111 0 0122556656432 233345544 478899866654
No 69
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=49.49 E-value=2.6e+02 Score=27.73 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=58.8
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeecCCCCCCcc
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP-FSFKIVLVTETKDLNE 237 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~-Fef~~v~~~~~e~l~~ 237 (412)
.-+|+|++.|.|. +--.||.+ + -+++||+. +...++.+.+. |+..|++ .+|..- +.+++..
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~--~----~~V~gvD~-s~~av~~A~~n----~~~~~l~~v~~~~~---D~~~~~~ 235 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP--G----MQLTGIEI-SAEAIACAKQS----AAELGLTNVQFQAL---DSTQFAT 235 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc--C----CEEEEEeC-CHHHHHHHHHH----HHHcCCCceEEEEc---CHHHHHH
Confidence 3589999999985 33445543 2 36899987 55556555444 4455664 555443 2322221
Q ss_pred ccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEeec
Q 048129 238 DKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVE 283 (412)
Q Consensus 238 ~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E~e 283 (412)
. . ...-+.|++|=+ ..+.-+.+++.+.+++|+-++.+.-+
T Consensus 236 ~-~-~~~~D~Vv~dPP----r~G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 236 A-Q-GEVPDLVLVNPP----RRGIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred h-c-CCCCeEEEECCC----CCCccHHHHHHHHHcCCCeEEEEECC
Confidence 1 1 112367777633 11223567888999999988776543
No 70
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=49.41 E-value=26 Score=34.51 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.2
Q ss_pred hcCCeeEEEecccCCccchHHHHHHHHh
Q 048129 155 ASAKRIHLIDLAIRSGSHCIVLMQALAT 182 (412)
Q Consensus 155 ~g~~~vHIID~~i~~G~QWp~LiqaLa~ 182 (412)
.|.+.+||||+|-+.+.+ ..+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 489999999999877777 566777876
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=49.14 E-value=1.1e+02 Score=27.95 Aligned_cols=111 Identities=9% Similarity=0.137 Sum_probs=58.1
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccc
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNED 238 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~ 238 (412)
.--|+|+|.|.|.= +-.||.+. | ...++||+. +...++.+.+++. ..|+. ..+.+. .+..++...
T Consensus 17 ~~~ilDiGcG~G~~----~~~la~~~--p--~~~v~gvD~-~~~~l~~a~~~~~----~~~l~-ni~~i~-~d~~~~~~~ 81 (194)
T TIGR00091 17 APLHLEIGCGKGRF----LIDMAKQN--P--DKNFLGIEI-HTPIVLAANNKAN----KLGLK-NLHVLC-GDANELLDK 81 (194)
T ss_pred CceEEEeCCCccHH----HHHHHHhC--C--CCCEEEEEe-eHHHHHHHHHHHH----HhCCC-CEEEEc-cCHHHHHHh
Confidence 34799999998854 44555553 3 368999987 5555655555543 34553 233343 233332211
Q ss_pred cccCCCCceEEEeecccc--CCCCc----hHHHHHHH-HhcCCCEEEEEeecC
Q 048129 239 KFDLNAGEAVAVYSPILL--SRTRH----PDFLIKML-RKISPCVMVIIEVEA 284 (412)
Q Consensus 239 ~l~~~~~E~laVn~~~~L--~~~~~----~~~~L~~v-r~L~P~vvvl~E~ea 284 (412)
.+.-..=+.+++|+..-- ....+ .+.+|+.+ +.|+|.-.+.+..|.
T Consensus 82 ~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 82 FFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred hCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 111011135566653221 00001 15677765 778999888765543
No 72
>PRK00811 spermidine synthase; Provisional
Probab=48.78 E-value=1.7e+02 Score=28.78 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=55.4
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhc--CCcEEEEEeecCCCCCCccc
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETW--NLPFSFKIVLVTETKDLNED 238 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~l--gv~Fef~~v~~~~~e~l~~~ 238 (412)
+|+|+|.|.|.= ...+.+++ + .-+||+|+. +...++.+.+.+.++.... +=.+++ +. .+.......
T Consensus 79 ~VL~iG~G~G~~----~~~~l~~~---~-~~~V~~VEi-d~~vv~~a~~~~~~~~~~~~~d~rv~v--~~-~Da~~~l~~ 146 (283)
T PRK00811 79 RVLIIGGGDGGT----LREVLKHP---S-VEKITLVEI-DERVVEVCRKYLPEIAGGAYDDPRVEL--VI-GDGIKFVAE 146 (283)
T ss_pred EEEEEecCchHH----HHHHHcCC---C-CCEEEEEeC-CHHHHHHHHHHhHHhccccccCCceEE--EE-CchHHHHhh
Confidence 678888887743 34444442 2 358999987 4455666666555544322 112333 32 111111110
Q ss_pred cccCCCCceEEEeeccccCCCCc--hHHHHHHH-HhcCCCEEEEEeec
Q 048129 239 KFDLNAGEAVAVYSPILLSRTRH--PDFLIKML-RKISPCVMVIIEVE 283 (412)
Q Consensus 239 ~l~~~~~E~laVn~~~~L~~~~~--~~~~L~~v-r~L~P~vvvl~E~e 283 (412)
.-..=+++++++.-....+.. ...|++.+ +.|+|.-++++-.+
T Consensus 147 --~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 147 --TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred --CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 011236777765322211111 25666554 88999998886433
No 73
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=45.80 E-value=2.5e+02 Score=28.23 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=56.1
Q ss_pred HHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 048129 149 AIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVL 228 (412)
Q Consensus 149 aIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~ 228 (412)
++++.+...+.=+|+|+|.|.|. ++..++.+ |+ -++|||++ +...+.+ .+...+++.. .-...+...
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~---~~v~GiDp-S~~ml~q-~~~~~~~~~~-~~~v~~~~~- 178 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA---KSLVGIDP-TVLFLCQ-FEAVRKLLDN-DKRAILEPL- 178 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC---CEEEEEcC-CHHHHHH-HHHHHHHhcc-CCCeEEEEC-
Confidence 45555443333489999999986 34445444 43 26899987 4333332 1222223221 112333332
Q ss_pred cCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEe
Q 048129 229 VTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIE 281 (412)
Q Consensus 229 ~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E 281 (412)
.++++... ..=++|+.+.++. ..+++.+.+-..-+.|+|.-.++++
T Consensus 179 --~ie~lp~~----~~FD~V~s~gvL~-H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 179 --GIEQLHEL----YAFDTVFSMGVLY-HRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred --CHHHCCCC----CCcCEEEEcchhh-ccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 23444321 1123444333221 3345555454555779999777765
No 74
>PRK14968 putative methyltransferase; Provisional
Probab=43.04 E-value=2.3e+02 Score=24.90 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=28.6
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHH
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRL 211 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL 211 (412)
.-.|+|+|.|.|. +...|+.+ + .++|+++. +...++.+.+++
T Consensus 24 ~~~vLd~G~G~G~----~~~~l~~~--~----~~v~~~D~-s~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGI----VAIVAAKN--G----KKVVGVDI-NPYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCH----HHHHHHhh--c----ceEEEEEC-CHHHHHHHHHHH
Confidence 3469999999998 45566655 1 46899986 445555555554
No 75
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=42.97 E-value=1e+02 Score=30.03 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=36.4
Q ss_pred CchhhHHH-HHhhHHHH----hhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHH
Q 048129 136 SSFYQATL-FAGTQAII----ERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGK 209 (412)
Q Consensus 136 sP~~~fa~-~taNqaIl----eA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~ 209 (412)
.|--+++. |..|+.|. +.+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+. +...++.+.+
T Consensus 15 ~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~----~v~avE~-d~~~~~~~~~ 82 (272)
T PRK00274 15 RAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA----KVTAVEI-DRDLAPILAE 82 (272)
T ss_pred CCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC----cEEEEEC-CHHHHHHHHH
Confidence 33333443 44444444 33333445689999999874 56666766 22 5899987 3344444433
No 76
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=41.33 E-value=25 Score=28.04 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=41.2
Q ss_pred EecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccccC
Q 048129 163 IDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDL 242 (412)
Q Consensus 163 ID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~ 242 (412)
+|+|.|.|.==..|++.+ | ..++|+++. +...++.+.+|+.+.- +..+++..+. ..+..... ..
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~-~~~~~~~D~-s~~~l~~a~~~~~~~~---~~~~~~~~~~--~~~~~~~~-~~- 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------P-DARYTGVDI-SPSMLERARERLAELG---NDNFERLRFD--VLDLFDYD-PP- 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---------EEEEEEEES-SSSTTSTTCCCHHHCT------EEEEE----SSS---CC-C--
T ss_pred CEeCccChHHHHHHHHhC-------C-CCEEEEEEC-CHHHHHHHHHHhhhcC---CcceeEEEee--cCChhhcc-cc-
Confidence 478888776555555555 3 599999997 3344444444444332 2223332222 11111110 00
Q ss_pred CCCceEEEeeccccCCCCchHHHHHHH-HhcCCCE
Q 048129 243 NAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCV 276 (412)
Q Consensus 243 ~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~v 276 (412)
..=+.|+.+..++-- .....+|+.+ +-|+|.-
T Consensus 65 ~~fD~V~~~~vl~~l--~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL--EDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp ---SEEEEE-TTS----S-HHHHHHHHTTT-TSS-
T ss_pred cccceehhhhhHhhh--hhHHHHHHHHHHHcCCCC
Confidence 122344444333322 5566778877 5567754
No 77
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=40.99 E-value=3.6e+02 Score=26.45 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=33.1
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP 221 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~ 221 (412)
..+|+|+|.|.|. +.-.|+.+. | ..++|||+. +...++.+.++ ++..|++
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~--~--~~~v~avDi-s~~al~~A~~n----~~~~~~~ 171 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF--P--EAEVDAVDI-SPDALAVAEIN----IERHGLE 171 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC--C--CCEEEEEEC-CHHHHHHHHHH----HHHcCCC
Confidence 4589999999885 444555542 2 378999987 55666666555 3445654
No 78
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=40.92 E-value=2.9e+02 Score=25.31 Aligned_cols=101 Identities=17% Similarity=0.279 Sum_probs=51.7
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCC-cEEEEEeecCCCCCCc
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNL-PFSFKIVLVTETKDLN 236 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv-~Fef~~v~~~~~e~l~ 236 (412)
+...|+|+|.|.|. +...++.. ++ ++|+++. +...++.+.+++. ..++ ++.|... +..++.
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~~----~v~~iD~-s~~~~~~a~~~~~----~~~~~~~~~~~~---d~~~~~ 106 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--GA----NVTGIDA-SEENIEVAKLHAK----KDPLLKIEYRCT---SVEDLA 106 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--CC----eEEEEeC-CHHHHHHHHHHHH----HcCCCceEEEeC---CHHHhh
Confidence 36689999999884 33344443 22 3889986 4444555554433 2444 3444332 222221
Q ss_pred cccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEE
Q 048129 237 EDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVII 280 (412)
Q Consensus 237 ~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~ 280 (412)
... ..+-+.++.+.. +........+|+.+ +.|+|.-++++
T Consensus 107 ~~~--~~~~D~i~~~~~--l~~~~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 107 EKG--AKSFDVVTCMEV--LEHVPDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred cCC--CCCccEEEehhH--HHhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 111 122344444433 32223344566655 67899876665
No 79
>PRK06922 hypothetical protein; Provisional
Probab=39.99 E-value=1.9e+02 Score=32.41 Aligned_cols=103 Identities=12% Similarity=0.180 Sum_probs=56.3
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccc
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNED 238 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~ 238 (412)
.-.|+|+|.|.|. +...|+.+. | ..++|||+. +...++.+.+++ ...|.++++ +. .+..++. .
T Consensus 419 g~rVLDIGCGTG~----ls~~LA~~~--P--~~kVtGIDI-S~~MLe~Ararl----~~~g~~ie~--I~-gDa~dLp-~ 481 (677)
T PRK06922 419 GDTIVDVGAGGGV----MLDMIEEET--E--DKRIYGIDI-SENVIDTLKKKK----QNEGRSWNV--IK-GDAINLS-S 481 (677)
T ss_pred CCEEEEeCCCCCH----HHHHHHHhC--C--CCEEEEEEC-CHHHHHHHHHHh----hhcCCCeEE--EE-cchHhCc-c
Confidence 3579999999984 445666653 3 379999987 555566665543 233555444 32 2222221 1
Q ss_pred cccCCCC--ceEEEeeccc-c-C---------CCCchHHHHHHH-HhcCCCEEEEE
Q 048129 239 KFDLNAG--EAVAVYSPIL-L-S---------RTRHPDFLIKML-RKISPCVMVII 280 (412)
Q Consensus 239 ~l~~~~~--E~laVn~~~~-L-~---------~~~~~~~~L~~v-r~L~P~vvvl~ 280 (412)
. ..++ +.++.|..++ + + .......+|+.+ +.|+|.-.+++
T Consensus 482 ~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 482 S--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred c--cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1 1222 4555554443 1 1 112344566555 88999866655
No 80
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=39.76 E-value=68 Score=30.01 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=34.1
Q ss_pred hhhhcCCeeEEEecccCCc---cchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHH
Q 048129 152 ERVASAKRIHLIDLAIRSG---SHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFA 215 (412)
Q Consensus 152 eA~~g~~~vHIID~~i~~G---~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA 215 (412)
-+++=.+.=|++|+|.|.| .+|. + + +| +.|+++|+. +.+.++.+.++..+|.
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a-~----~----~p--~~~v~AIe~-~~~a~~~~~~N~~~fg 82 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWA-L----A----GP--SGRVIAIER-DEEALELIERNAARFG 82 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHH-H----h----CC--CceEEEEec-CHHHHHHHHHHHHHhC
Confidence 3444344449999999988 6774 1 1 33 699999986 5555666666655543
No 81
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=39.62 E-value=95 Score=30.90 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=29.4
Q ss_pred HHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHH
Q 048129 150 IIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRL 211 (412)
Q Consensus 150 IleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL 211 (412)
|++++.-...=.|+|+|.|.|.- -..|+.+. -++|+|+. +.+.++.+.+++
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~L----T~~Ll~~~------~~V~avEi-D~~li~~l~~~~ 78 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNL----TEKLLQLA------KKVIAIEI-DPRMVAELKKRF 78 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHH----HHHHHHhC------CcEEEEEC-CHHHHHHHHHHH
Confidence 33443333334799999998864 34555542 25899986 444444444444
No 82
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=38.98 E-value=3.1e+02 Score=28.55 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=28.5
Q ss_pred HHHHHhHhhcc-ccccccccchhHH-HHHHHhCCCeeec
Q 048129 330 QHIRNIIATEG-EERIFRHMKIDAW-RKFFHRFGMVEAE 366 (412)
Q Consensus 330 ~eI~niVa~eG-~~R~eR~e~~~~W-~~r~~~aGF~~~~ 366 (412)
++-.+.+..|| +.|.+||.....+ +..|+..||+.++
T Consensus 252 ~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 252 REALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 44456677789 6799999887644 5678889999887
No 83
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=38.95 E-value=91 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=27.3
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHH
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLA 212 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~ 212 (412)
+|+|+|.|.|.. ...++.+. |. .++|+++. +...++.+.+++.
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~-~~v~~vD~-s~~~~~~a~~~~~ 64 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PN-GRVYAIER-NPEALRLIERNAR 64 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CC-ceEEEEcC-CHHHHHHHHHHHH
Confidence 899999998754 34445442 22 78999987 4444555544433
No 84
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=38.46 E-value=3.1e+02 Score=27.95 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=53.0
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCcc
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNE 237 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~ 237 (412)
...+|+|+|.|.|.-. ..++.+. |. .++|+++. +...++.+.++. ..-++. | +. .+.+++..
T Consensus 113 ~~~~VLDLGcGtG~~~----l~La~~~--~~--~~VtgVD~-S~~mL~~A~~k~----~~~~i~--~--i~-gD~e~lp~ 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTT----LGIVKHV--DA--KNVTILDQ-SPHQLAKAKQKE----PLKECK--I--IE-GDAEDLPF 174 (340)
T ss_pred CCCEEEEEecCCcHHH----HHHHHHC--CC--CEEEEEEC-CHHHHHHHHHhh----hccCCe--E--Ee-ccHHhCCC
Confidence 4578999999998733 3444442 11 57999987 545555555432 122333 2 32 33333321
Q ss_pred ccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEE
Q 048129 238 DKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVII 280 (412)
Q Consensus 238 ~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~ 280 (412)
.-..=+.++.|..+.. .+++ +.+|+.+ +.|+|.-.+++
T Consensus 175 ---~~~sFDvVIs~~~L~~-~~d~-~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 175 ---PTDYADRYVSAGSIEY-WPDP-QRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ---CCCceeEEEEcChhhh-CCCH-HHHHHHHHHhcCCCcEEEE
Confidence 1112245666555443 2223 3455554 78899877655
No 85
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=38.28 E-value=51 Score=23.39 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=21.5
Q ss_pred HHhcCCHHHHHHHHHHhccccCCCCCchhhH
Q 048129 54 KIGSQQFDRASTLLDHCENFSSKIGNSVERV 84 (412)
Q Consensus 54 Av~~~~~~~A~~lL~~l~~~~s~~G~~~qRl 84 (412)
-++.||.+.|..+|..+-. .|++.||-
T Consensus 9 yie~Gd~e~Ar~lL~evl~----~~~~~q~~ 35 (44)
T TIGR03504 9 YIEMGDLEGARELLEEVIE----EGDEAQRQ 35 (44)
T ss_pred HHHcCChHHHHHHHHHHHH----cCCHHHHH
Confidence 4899999999999998853 57766653
No 86
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=38.09 E-value=3.5e+02 Score=25.47 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=56.8
Q ss_pred HhhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 048129 145 AGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSF 224 (412)
Q Consensus 145 taNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef 224 (412)
..-+.+++.+...+.-+|+|+|.|.|. +.+.|+.+ | -++|+++. +...++.+.++. ....|
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~--~----~~v~~~D~-s~~~l~~a~~~~--------~~~~~ 89 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER--G----SQVTALDL-SPPMLAQARQKD--------AADHY 89 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc--C----CeEEEEEC-CHHHHHHHHhhC--------CCCCE
Confidence 444566677765445679999999984 55666654 2 36899987 444444443331 11122
Q ss_pred EEeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHH-HHhcCCCEEEEE
Q 048129 225 KIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKM-LRKISPCVMVII 280 (412)
Q Consensus 225 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~-vr~L~P~vvvl~ 280 (412)
+. .+.+++.. .-..=+.|+-|. .+........+|+. .+-|+|.-.++.
T Consensus 90 --~~-~d~~~~~~---~~~~fD~V~s~~--~l~~~~d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 90 --LA-GDIESLPL---ATATFDLAWSNL--AVQWCGNLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred --EE-cCcccCcC---CCCcEEEEEECc--hhhhcCCHHHHHHHHHHHcCCCeEEEE
Confidence 21 23333321 101114444443 33222233445554 477899766665
No 87
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=36.74 E-value=2.6e+02 Score=25.29 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=59.0
Q ss_pred HHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccccCCCCceEEEeec
Q 048129 174 IVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSP 253 (412)
Q Consensus 174 p~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~ 253 (412)
..+=+.|+.+.++| .+=|.+ ....=+|+.+|+.++=++. |-.|..|.. .-++..-.-...++++|.|-|.
T Consensus 12 S~~Ae~la~~~~~~-----~~YiAT-~~~~D~em~~RI~~H~~~R--~~~w~tiE~--~~~l~~~~~~~~~~~~vLlDcl 81 (167)
T PF02283_consen 12 SSFAERLALSFGGP-----VTYIAT-ARPFDEEMRERIARHRQRR--PKGWITIEE--PRDLAEALEELSPGDVVLLDCL 81 (167)
T ss_dssp HHHHHHHHTS--SC-----EEEEES-SHHHHHHHHHHHHHHHHHS--STCEEEEE---SS-GGGTS-TTS-T-EEEEE-H
T ss_pred HHHHHHHHHhcCCC-----cEEEeC-CCCCCHHHHHHHHHHHHhC--CCCcEEEec--chhHHHHHHHhccCCeEEEeCH
Confidence 34557777665433 233333 2223457899999998888 555666642 2233332222344789999987
Q ss_pred ccc------C-C------CCchHHHHHHHHhcCCCEEEEEeecCcCCC--CchHHHHHHHH
Q 048129 254 ILL------S-R------TRHPDFLIKMLRKISPCVMVIIEVEANHNS--QNFEDRFFEVL 299 (412)
Q Consensus 254 ~~L------~-~------~~~~~~~L~~vr~L~P~vvvl~E~ea~~n~--~~F~~RF~eaL 299 (412)
..+ . . ....+.++..+++.++++|+++++=...-. .....+|++.+
T Consensus 82 t~wl~n~l~~~~~~~~~~~~~i~~~l~~l~~~~~~lViVsnEVG~GiVP~~~~~R~yrd~l 142 (167)
T PF02283_consen 82 TLWLANLLFAEEDDEEDILEEIERLLEALRERNADLVIVSNEVGWGIVPMDPLTRRYRDLL 142 (167)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--SEEEEEEE---SS---SSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCCCEEEEEcCCCCCCCCCCHHHHHHHHHH
Confidence 665 1 1 124567788888878888777754333221 23445555444
No 88
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=34.71 E-value=4.8e+02 Score=26.10 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=54.1
Q ss_pred HHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 048129 149 AIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVL 228 (412)
Q Consensus 149 aIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~ 228 (412)
.|++.+..-+.-+|+|+|.|.|.. ...++.+ |+ -+++||++ +...+.+. +...+++. .+.+.+|...
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~---~~V~GiD~-S~~~l~q~-~a~~~~~~-~~~~i~~~~~- 179 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GA---KLVVGIDP-SQLFLCQF-EAVRKLLG-NDQRAHLLPL- 179 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CC---CEEEEEcC-CHHHHHHH-HHHHHhcC-CCCCeEEEeC-
Confidence 344455322234799999998842 2345544 33 24999986 33322211 11112221 1223455443
Q ss_pred cCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEe
Q 048129 229 VTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIE 281 (412)
Q Consensus 229 ~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E 281 (412)
+++++.. -..=++|+.+.++. ...++.+.+-+.-+.|+|.-.++.+
T Consensus 180 --d~e~lp~----~~~FD~V~s~~vl~-H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 180 --GIEQLPA----LKAFDTVFSMGVLY-HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred --CHHHCCC----cCCcCEEEECChhh-ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 2333321 01113433322221 3345555455555888999877765
No 89
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=34.40 E-value=2.1e+02 Score=29.86 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=94.7
Q ss_pred cCCccchHH----HHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccccC
Q 048129 167 IRSGSHCIV----LMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDL 242 (412)
Q Consensus 167 i~~G~QWp~----LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~ 242 (412)
-+||.=|.. ++++.-+-..+-|.. +++-+..+.-..-+...+.+.+=..+-|+..+..-+.....+++.. .+
T Consensus 220 P~HG~i~~~~~~~i~~~Y~~W~~~~~~~-~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~---~i 295 (388)
T COG0426 220 PSHGPIWRGNPKEIVEAYRDWAEGQPKG-KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVE---EI 295 (388)
T ss_pred cCCCceeeCCHHHHHHHHHHHHccCCcc-eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHH---HH
Confidence 358999986 666655544454444 6776654221222344555555566678887777765333333332 24
Q ss_pred CCCceEEEeecccc-CCCCchHHHHHHHHhcCCCEEEEEeecCcCCCCchHHHHHHHHHH--HHHHHHHhhhhcCCCCHH
Q 048129 243 NAGEAVAVYSPILL-SRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFH--YSASFDCLKVSMARCDPE 319 (412)
Q Consensus 243 ~~~E~laVn~~~~L-~~~~~~~~~L~~vr~L~P~vvvl~E~ea~~n~~~F~~RF~eaL~~--YsalFdsLda~~~~~~~~ 319 (412)
.+-++|+|=++.-. ....+...+|..|+.++|+-=..+--++-.-+..=+....+-|.- |...|+.+.......+.+
T Consensus 296 ~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~~~~~~~i~vk~~P~~~~ 375 (388)
T COG0426 296 LDAKGLVVGSPTINGGAHPPIQTALGYVLALAPKNKLAGVFGSYGWSGEAVDLIEEKLKDLGFEFGFDGIEVKFRPTEED 375 (388)
T ss_pred hhcceEEEecCcccCCCCchHHHHHHHHHhccCcCceEEEEeccCCCCcchHHHHHHHHhcCcEEeccceEEEecCCHHH
Confidence 45678888776654 666778999999999988643333333333334445555555555 556666666555445556
Q ss_pred HHHHHHHHHhHHH
Q 048129 320 RVTFEEMYLGQHI 332 (412)
Q Consensus 320 R~~iE~~~lg~eI 332 (412)
..+.++ +|+++
T Consensus 376 l~~c~e--~g~~l 386 (388)
T COG0426 376 LKKCEE--AGRDL 386 (388)
T ss_pred HHHHHH--HHHHh
Confidence 666654 55554
No 90
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=33.52 E-value=1.5e+02 Score=26.80 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=27.2
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHH
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRL 211 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL 211 (412)
.-.|+|+|.|.|. +--.++.+ +| ..++|+|+. +...++.+.++.
T Consensus 32 ~~~vLDiG~G~G~----~~~~la~~--~~--~~~v~~vD~-s~~~~~~a~~n~ 75 (187)
T PRK08287 32 AKHLIDVGAGTGS----VSIEAALQ--FP--SLQVTAIER-NPDALRLIKENR 75 (187)
T ss_pred CCEEEEECCcCCH----HHHHHHHH--CC--CCEEEEEEC-CHHHHHHHHHHH
Confidence 3479999999883 33334444 23 378999987 444455554444
No 91
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=33.16 E-value=2.3e+02 Score=29.65 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=26.2
Q ss_pred eEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEeecCcC
Q 048129 247 AVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANH 286 (412)
Q Consensus 247 ~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E~ea~~ 286 (412)
.++||+.=.-..-+.++-....|...+|+.|+..|.+...
T Consensus 174 ~ilIdT~GWi~G~~g~elk~~li~~ikP~~Ii~l~~~~~~ 213 (398)
T COG1341 174 FILIDTDGWIKGWGGLELKRALIDAIKPDLIIALERANEL 213 (398)
T ss_pred EEEEcCCCceeCchHHHHHHHHHhhcCCCEEEEecccccc
Confidence 3344443333233556677788999999999999876543
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=32.37 E-value=1.4e+02 Score=27.10 Aligned_cols=116 Identities=9% Similarity=0.154 Sum_probs=59.3
Q ss_pred HHhhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEE
Q 048129 144 FAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFS 223 (412)
Q Consensus 144 ~taNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fe 223 (412)
--..+.+++.+.-...=.|+|+|.|.|.- . ..++.. +| . -++|+|+. +...++.+.+++. .+|++ .
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~-~---~~la~~--~~-~-~~V~~vD~-s~~~~~~a~~n~~----~~~~~-~ 91 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTI-P---VEAGLL--CP-K-GRVIAIER-DEEVVNLIRRNCD----RFGVK-N 91 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHH-H---HHHHHH--CC-C-CEEEEEeC-CHHHHHHHHHHHH----HhCCC-C
Confidence 34445566666533444799999999972 2 223322 22 2 58999987 4455555555554 44543 2
Q ss_pred EEEeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEee
Q 048129 224 FKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIEV 282 (412)
Q Consensus 224 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E~ 282 (412)
++.+. .+..+. .+.+.-.+ +.+.+. .....+.+|+.+ +.|+|.-.+++..
T Consensus 92 v~~~~-~d~~~~-~~~~~~~~-d~v~~~------~~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 92 VEVIE-GSAPEC-LAQLAPAP-DRVCIE------GGRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred eEEEE-CchHHH-HhhCCCCC-CEEEEE------CCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 33332 222110 01111112 233332 123455667765 5889997766654
No 93
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=32.23 E-value=4.3e+02 Score=24.78 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=23.6
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHH
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRME 205 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~ 205 (412)
.-.|+|.|.|.|.- ...||.+ | ..+|||+. +...++
T Consensus 35 ~~rvLd~GCG~G~d----a~~LA~~--G----~~V~gvD~-S~~Ai~ 70 (213)
T TIGR03840 35 GARVFVPLCGKSLD----LAWLAEQ--G----HRVLGVEL-SEIAVE 70 (213)
T ss_pred CCeEEEeCCCchhH----HHHHHhC--C----CeEEEEeC-CHHHHH
Confidence 34899999998832 2335655 2 57999987 434444
No 94
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=32.22 E-value=3.1e+02 Score=25.87 Aligned_cols=36 Identities=17% Similarity=0.018 Sum_probs=23.7
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHH
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRME 205 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~ 205 (412)
.-.|+|.|.|.|. =+..||.+ | ..+|||+. +...++
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~--G----~~V~avD~-s~~Ai~ 73 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ--G----HEVLGVEL-SELAVE 73 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC--C----CeEEEEcc-CHHHHH
Confidence 4478999999883 23345655 2 57999987 434444
No 95
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=31.60 E-value=3.4e+02 Score=25.49 Aligned_cols=69 Identities=25% Similarity=0.405 Sum_probs=51.2
Q ss_pred hhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEe-cCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 048129 154 VASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAV-GSSSKQRMEETGKRLAYFAETWNLPFSFKIVL 228 (412)
Q Consensus 154 ~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I-~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~ 228 (412)
+.+.+.|-+||=-|+-|.=-..+|++|-... |-++.-+..| ++.+ .+-..+..+.++.+|+|.+|..+.
T Consensus 118 l~~~~~lVLVDDEiSTG~T~lnli~al~~~~--p~~~yvvasL~d~~~----~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 118 LRNARTLVLVDDEISTGNTFLNLIRALHAKY--PRKRYVVASLLDWRS----EEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred hcCCCCEEEEecCccchHHHHHHHHHHHHhC--CCceEEEEEEeeCCC----HHHHHHHHHHHHHcCCcEEEEEee
Confidence 4457799999999999999999999998774 3223434333 2222 234567888999999999998874
No 96
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=30.67 E-value=66 Score=34.27 Aligned_cols=50 Identities=28% Similarity=0.398 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccccCCCCceEEEeecccc
Q 048129 201 KQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILL 256 (412)
Q Consensus 201 ~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L 256 (412)
.+.+++.|.||.+-|..-+.||+|..|.-+.+..+ ..+|--|+||.-+-+
T Consensus 73 ~~yv~~~g~rL~~~a~~~~~~f~f~lV~d~~iNAF------A~~Gg~v~vntGLll 122 (484)
T COG4783 73 EEYVNSLGQRLAAAADLVKTPFTFFLVNDDSINAF------ATPGGYVVVNTGLLL 122 (484)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEecCCccchh------hcCCceEEEehHHHH
Confidence 45788999999999999999999999962222222 357999999998777
No 97
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=30.43 E-value=2.2e+02 Score=23.20 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=53.4
Q ss_pred HHhhHHHHhhhh--c--CCeeEEEecccCCc--cchHHHHHHHHhCC-----------CC-CCceEEEEEecCCChHHHH
Q 048129 144 FAGTQAIIERVA--S--AKRIHLIDLAIRSG--SHCIVLMQALATRQ-----------EC-PVELLKITAVGSSSKQRME 205 (412)
Q Consensus 144 ~taNqaIleA~~--g--~~~vHIID~~i~~G--~QWp~LiqaLa~R~-----------~g-pp~~LrIT~I~~~~~~~l~ 205 (412)
...|+.++++++ | -.+.|.||+=+.+. -+...+++.|.... .| .|-.++++-......+.+.
T Consensus 3 ~~~n~~vl~~L~~~Gddl~~~r~ieh~~~f~~~~~~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~I~ 82 (104)
T PF06877_consen 3 IIENREVLEALEEDGDDLSKPRPIEHWFYFEDEEDAEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISREMVLDYEDIN 82 (104)
T ss_dssp HHHHHHHHHHHHHHT--TTS-EEEEEEEEES-HHHHHHHHHHHHHHS---B----B-SS-SSBEEEEEEEEE-S-HHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEEecCCCHHHHH
Confidence 357899999996 3 35899999887755 56677777776431 12 2224666666666667889
Q ss_pred HHHHHHHHHHHhcCCc
Q 048129 206 ETGKRLAYFAETWNLP 221 (412)
Q Consensus 206 ~tg~rL~~fA~~lgv~ 221 (412)
+.-..|.+.|+.+|..
T Consensus 83 ~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 83 AITQELEDLAKEFGGE 98 (104)
T ss_dssp HHHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHHHHhCcE
Confidence 9999999999999875
No 98
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=29.93 E-value=2.8e+02 Score=26.68 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=27.3
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHH
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETG 208 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg 208 (412)
..-+|+|+|.|.|.--..|.+.+... . ...++||+. +...++.+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~---~--~~~v~giD~-s~~~l~~A~ 129 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI---T--TMQLFGLDI-SKVAIKYAA 129 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc---c--CCeEEEECC-CHHHHHHHH
Confidence 44679999999996444444333211 1 256899987 555555443
No 99
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=29.89 E-value=2.3e+02 Score=20.97 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=49.3
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccc
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKF 240 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l 240 (412)
+|+|+|.|.|. +...++.. + ..++++++. +...++.+.+ .......-+.+|... +..+... .
T Consensus 1 ~ildig~G~G~----~~~~~~~~----~-~~~~~~~d~-~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~--~ 62 (107)
T cd02440 1 RVLDLGCGTGA----LALALASG----P-GARVTGVDI-SPVALELARK---AAAALLADNVEVLKG---DAEELPP--E 62 (107)
T ss_pred CeEEEcCCccH----HHHHHhcC----C-CCEEEEEeC-CHHHHHHHHH---HHhcccccceEEEEc---Chhhhcc--c
Confidence 47899998874 45555541 2 368999986 3333333332 111111223344332 2222221 1
Q ss_pred cCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEEe
Q 048129 241 DLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVIIE 281 (412)
Q Consensus 241 ~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~E 281 (412)
....-+.+++|..+.-. ......+++.+ +.++|.-.+++.
T Consensus 63 ~~~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 63 ADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cCCceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 11122445454443221 33445566654 567888877765
No 100
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=29.33 E-value=1.9e+02 Score=27.90 Aligned_cols=80 Identities=18% Similarity=0.089 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhh-cCCCCHHH-HHHHHHHHhHHHHHhHhhccccccc-cccchhHHHHHHHhCCCeeecCCcchHHHHHH
Q 048129 301 HYSASFDCLKVS-MARCDPER-VTFEEMYLGQHIRNIIATEGEERIF-RHMKIDAWRKFFHRFGMVEAELSTSSLFQAEL 377 (412)
Q Consensus 301 ~YsalFdsLda~-~~~~~~~R-~~iE~~~lg~eI~niVa~eG~~R~e-R~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ 377 (412)
.+-..-+-|... ++-..++| .++|. -.++|.|+|+..+.+..- +|-+-.+=...|..|||..-|+. .+..|++.
T Consensus 72 ~~eI~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K-~ae~Qv~e 148 (234)
T COG1500 72 PDEIAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFK-SAEEQVQE 148 (234)
T ss_pred HHHHHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCC-CHHHHHHH
Confidence 334444444432 33333444 44454 689999999999876444 46666788899999999998886 57789999
Q ss_pred HHHHcC
Q 048129 378 VIKNFA 383 (412)
Q Consensus 378 ll~~~~ 383 (412)
.++...
T Consensus 149 vlK~l~ 154 (234)
T COG1500 149 VLKALR 154 (234)
T ss_pred HHHHHh
Confidence 888763
No 101
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=28.54 E-value=85 Score=28.64 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEE
Q 048129 190 LLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKI 226 (412)
Q Consensus 190 ~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~ 226 (412)
.+|+||= ..+.|+++-..|.+ ..+|+|++|.-
T Consensus 127 ~vRVtgK---krDDLQ~viallk~--~d~~~pLQF~N 158 (160)
T PF04461_consen 127 QVRVTGK---KRDDLQEVIALLKE--QDLGIPLQFNN 158 (160)
T ss_dssp EEEEEES----HHHHHHHHHHHHH--S--SS--EEEE
T ss_pred EEEEecC---CHHHHHHHHHHHHc--ccCCCCceecc
Confidence 6999984 66889999988884 58999999974
No 102
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=28.46 E-value=3.7e+02 Score=22.83 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhcCCcEE--EEEeecCCCCCCccccc-----cCCCCc--eEEEeeccccC-CCCchHHHHHHHHhc
Q 048129 203 RMEETGKRLAYFAETWNLPFS--FKIVLVTETKDLNEDKF-----DLNAGE--AVAVYSPILLS-RTRHPDFLIKMLRKI 272 (412)
Q Consensus 203 ~l~~tg~rL~~fA~~lgv~Fe--f~~v~~~~~e~l~~~~l-----~~~~~E--~laVn~~~~L~-~~~~~~~~L~~vr~L 272 (412)
.++.=-+.+.+||+..|.++. |.-.. .+-.....+.| .+..|+ +|+|-..-+|. .+.....+++.++..
T Consensus 16 s~~~Q~~~~~~~a~~~g~~i~~~~~d~~-~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~ 94 (148)
T smart00857 16 SLERQLEALRAYAKANGWEVVRIYEDEG-VSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKK 94 (148)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEeCC-CcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHC
Confidence 355556779999999998763 22211 01112222222 245677 88988888883 334456788888888
Q ss_pred CCCEEEEEee
Q 048129 273 SPCVMVIIEV 282 (412)
Q Consensus 273 ~P~vvvl~E~ 282 (412)
+=+|+++.+.
T Consensus 95 gi~l~~~~~~ 104 (148)
T smart00857 95 GVRLVSVTEG 104 (148)
T ss_pred CCEEEECcCC
Confidence 8666665543
No 103
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=27.77 E-value=4.6e+02 Score=23.73 Aligned_cols=78 Identities=9% Similarity=0.083 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCCCCCcc-ccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEeecCcCC
Q 048129 209 KRLAYFAETWNLPFSFKIVLVTETKDLNE-DKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHN 287 (412)
Q Consensus 209 ~rL~~fA~~lgv~Fef~~v~~~~~e~l~~-~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E~ea~~n 287 (412)
.+|.+.-+.+.-.|+|..|.+........ ..+.-..|.+|+|-..- ....+.....++.+++++..++-++.+..+.+
T Consensus 115 ~~l~~~l~~l~~~yD~ViiD~pp~~~~~~~~~~~~~~D~vilV~~~~-~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 115 SNFKTLIETLRKYFDYIIIDTPPIGTVTDAAIIARACDASILVTDAG-EIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCccccchHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 44444444454467777776443222111 11111245666654332 12223456677888888887777666655543
No 104
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=27.56 E-value=1e+02 Score=28.43 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=45.5
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHhhhc
Q 048129 44 LVHLLILCA-EKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFN 97 (412)
Q Consensus 44 l~~lLl~cA-~Av~~~~~~~A~~lL~~l~~~~s~~G~~~qRla~yF~eAL~~Rl~ 97 (412)
+.++|+.|. ..+..++.+.|..++..+..+..|..+-..|+...|.+|+..=..
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~ 181 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE 181 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHc
Confidence 667777777 668888999999999999988877778889999999999876443
No 105
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=27.25 E-value=1.7e+02 Score=26.95 Aligned_cols=107 Identities=14% Similarity=0.124 Sum_probs=55.2
Q ss_pred HHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc--EEEEE
Q 048129 149 AIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP--FSFKI 226 (412)
Q Consensus 149 aIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~--Fef~~ 226 (412)
.+++++.-...-+|+|+|.|.|..=..|.+.+ ++. -++++|+. +...++.+.+++. ..|+. .+|..
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-----~~~--g~V~~iD~-~~~~~~~a~~~l~----~~~~~~~v~~~~ 130 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-----ERR--GKVYTVEI-VKELAIYAAQNIE----RLGYWGVVEVYH 130 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-----CCC--CEEEEEeC-CHHHHHHHHHHHH----HcCCCCcEEEEE
Confidence 35566654445579999998887443333333 121 37999987 4455555665553 34543 33333
Q ss_pred eecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEE
Q 048129 227 VLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVII 280 (412)
Q Consensus 227 v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~ 280 (412)
- +..+.-+. ..+=+.+++++...- . .+ ...+.|+|.-.+++
T Consensus 131 ~---d~~~~~~~---~~~fD~Ii~~~~~~~-~---~~---~l~~~L~~gG~lvi 171 (205)
T PRK13944 131 G---DGKRGLEK---HAPFDAIIVTAAAST-I---PS---ALVRQLKDGGVLVI 171 (205)
T ss_pred C---CcccCCcc---CCCccEEEEccCcch-h---hH---HHHHhcCcCcEEEE
Confidence 2 22111111 123467777655421 1 12 23466788665544
No 106
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=27.22 E-value=1e+02 Score=30.85 Aligned_cols=60 Identities=27% Similarity=0.445 Sum_probs=40.3
Q ss_pred HHHhhhhc---CCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc
Q 048129 149 AIIERVAS---AKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP 221 (412)
Q Consensus 149 aIleA~~g---~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~ 221 (412)
+++|++.. .+.-||.|.|.|.|.-=.+++..| | .-|+|+|+. ++..+.-++++ |+++++.
T Consensus 136 ~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-------~-~~~v~AiD~-S~~Ai~La~eN----~qr~~l~ 198 (328)
T KOG2904|consen 136 AVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-------P-QCTVTAIDV-SKAAIKLAKEN----AQRLKLS 198 (328)
T ss_pred HHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-------C-CceEEEEec-cHHHHHHHHHH----HHHHhhc
Confidence 45566543 244589999999998777777666 2 389999987 55556555544 4455544
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=26.63 E-value=6e+02 Score=24.68 Aligned_cols=49 Identities=31% Similarity=0.371 Sum_probs=31.1
Q ss_pred eEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc
Q 048129 160 IHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP 221 (412)
Q Consensus 160 vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~ 221 (412)
.+|+|+|.|.|.-- -.|+... | ..++|+++. +...++.+.++ ++..|+.
T Consensus 116 ~~vLDlG~GsG~i~----l~la~~~--~--~~~v~avDi-s~~al~~a~~n----~~~~~~~ 164 (284)
T TIGR00536 116 LHILDLGTGSGCIA----LALAYEF--P--NAEVIAVDI-SPDALAVAEEN----AEKNQLE 164 (284)
T ss_pred CEEEEEeccHhHHH----HHHHHHC--C--CCEEEEEEC-CHHHHHHHHHH----HHHcCCC
Confidence 58999999998533 3444432 2 368999987 55556555544 4445554
No 108
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=26.43 E-value=5.9e+02 Score=26.13 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=38.6
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
-.||+|.-++|++.----+-+.|++- .|..+-||-.++ +...++..-+-..+..++.+-=|-...|
T Consensus 116 a~V~~v~~~~G~~~~le~i~~~lsqh---~p~~vfv~hgds-STgV~q~~~~~~g~lc~k~~~lllVD~V 181 (385)
T KOG2862|consen 116 AEVDVVEADIGQAVPLEEITEKLSQH---KPKAVFVTHGDS-STGVLQDLLAISGELCHKHEALLLVDTV 181 (385)
T ss_pred ceeeEEecCcccCccHHHHHHHHHhc---CCceEEEEecCc-cccccchHHHHHHHHhhcCCeEEEEech
Confidence 36888888888777776777777762 234577777665 3333444334444445555544444444
No 109
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=26.36 E-value=3.1e+02 Score=26.38 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=27.6
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHH
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRL 211 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL 211 (412)
+.=+|+|+|.|.|. |-..|+.+. -++|+|+. +...++.+.+++
T Consensus 29 ~~~~VLEIG~G~G~----lt~~L~~~~------~~v~~vEi-d~~~~~~l~~~~ 71 (258)
T PRK14896 29 DGDPVLEIGPGKGA----LTDELAKRA------KKVYAIEL-DPRLAEFLRDDE 71 (258)
T ss_pred CcCeEEEEeCccCH----HHHHHHHhC------CEEEEEEC-CHHHHHHHHHHh
Confidence 34579999999886 445566552 25899987 444444444443
No 110
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=25.53 E-value=6.3e+02 Score=24.51 Aligned_cols=119 Identities=18% Similarity=0.286 Sum_probs=67.6
Q ss_pred cCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 048129 156 SAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDL 235 (412)
Q Consensus 156 g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l 235 (412)
...++-++..|+|.|.-.+= + +-. | --+||.|++. +.+++...+ .+|+. .|.+|.-..+...|++
T Consensus 74 k~~K~~vLEvgcGtG~Nfkf----y---~~~-p-~~svt~lDpn--~~mee~~~k--s~~E~--k~~~~~~fvva~ge~l 138 (252)
T KOG4300|consen 74 KSGKGDVLEVGCGTGANFKF----Y---PWK-P-INSVTCLDPN--EKMEEIADK--SAAEK--KPLQVERFVVADGENL 138 (252)
T ss_pred ccCccceEEecccCCCCccc----c---cCC-C-CceEEEeCCc--HHHHHHHHH--HHhhc--cCcceEEEEeechhcC
Confidence 35678899999998743211 1 111 4 4899999862 345554433 23333 4544441112345555
Q ss_pred ccccccCCCCceEEEeecccc-CCCCchHHHHHHH-HhcCCCEEEEE-eecCcCCCCchHHHHH
Q 048129 236 NEDKFDLNAGEAVAVYSPILL-SRTRHPDFLIKML-RKISPCVMVII-EVEANHNSQNFEDRFF 296 (412)
Q Consensus 236 ~~~~l~~~~~E~laVn~~~~L-~~~~~~~~~L~~v-r~L~P~vvvl~-E~ea~~n~~~F~~RF~ 296 (412)
.. +.++-.=+|-|.|-| +..+++. .|+.+ |-|+|.-.++- |+-+.-. .|..|+.
T Consensus 139 ~~----l~d~s~DtVV~TlvLCSve~~~k-~L~e~~rlLRpgG~iifiEHva~~y--~~~n~i~ 195 (252)
T KOG4300|consen 139 PQ----LADGSYDTVVCTLVLCSVEDPVK-QLNEVRRLLRPGGRIIFIEHVAGEY--GFWNRIL 195 (252)
T ss_pred cc----cccCCeeeEEEEEEEeccCCHHH-HHHHHHHhcCCCcEEEEEecccccc--hHHHHHH
Confidence 42 344445566677777 6666664 56666 55799876664 6655443 5666664
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=25.28 E-value=2.1e+02 Score=27.17 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=30.8
Q ss_pred cCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHH
Q 048129 156 SAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLA 212 (412)
Q Consensus 156 g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~ 212 (412)
..+..+|+|+|.|.|. +...|+... | ..++|+++. +...++.+.+++.
T Consensus 106 ~~~~~~vLDiG~GsG~----~~~~la~~~--~--~~~v~~iDi-s~~~l~~a~~n~~ 153 (275)
T PRK09328 106 LKEPLRVLDLGTGSGA----IALALAKER--P--DAEVTAVDI-SPEALAVARRNAK 153 (275)
T ss_pred ccCCCEEEEEcCcHHH----HHHHHHHHC--C--CCEEEEEEC-CHHHHHHHHHHHH
Confidence 3456789999999985 333444332 2 378999987 5455665555544
No 112
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=24.98 E-value=44 Score=25.89 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=16.2
Q ss_pred chhHHHHHHHhCCCeeecCC
Q 048129 349 KIDAWRKFFHRFGMVEAELS 368 (412)
Q Consensus 349 ~~~~W~~r~~~aGF~~~~ls 368 (412)
+..+-+.+|+.+|++|+.+-
T Consensus 4 RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 4 RVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHcCCCcceee
Confidence 34566889999999999873
No 113
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=24.63 E-value=1.6e+02 Score=28.21 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=35.5
Q ss_pred HHHhhHHHHhhhhc--CCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHH
Q 048129 143 LFAGTQAIIERVAS--AKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRL 211 (412)
Q Consensus 143 ~~taNqaIleA~~g--~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL 211 (412)
|..+.+..++++.. ...-.|+|+|.|.|. |.-+++.. |+. +++||+. +...++.+.+++
T Consensus 102 ~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~----l~i~~~~~--g~~---~v~giDi-s~~~l~~A~~n~ 162 (250)
T PRK00517 102 THPTTRLCLEALEKLVLPGKTVLDVGCGSGI----LAIAAAKL--GAK---KVLAVDI-DPQAVEAARENA 162 (250)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCcHHH----HHHHHHHc--CCC---eEEEEEC-CHHHHHHHHHHH
Confidence 34444456666652 345579999999884 33344433 332 4899987 555666666554
No 114
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=24.47 E-value=82 Score=28.15 Aligned_cols=34 Identities=12% Similarity=0.402 Sum_probs=26.7
Q ss_pred cchhHHHHHHHhCCCeeecCCcchHHHHHHHHHHc
Q 048129 348 MKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNF 382 (412)
Q Consensus 348 e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~ 382 (412)
|....|++.+.+|||.| |++..-+.-|-..++..
T Consensus 89 ~Nl~~W~~~L~ka~l~~-~it~~q~~lAl~flrel 122 (148)
T PF06711_consen 89 ENLQRWRRILQKAGLSP-PITDEQVRLALGFLREL 122 (148)
T ss_pred HHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHc
Confidence 35679999999999987 78887776666666655
No 115
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=24.28 E-value=2.6e+02 Score=25.17 Aligned_cols=71 Identities=10% Similarity=0.189 Sum_probs=41.7
Q ss_pred cCCeeEEEecccCCccchHHHHHHHH--hCCCCCCceEEEEEecC-CChHHHHHHHHHHHHHHHhcCCcEEEEE
Q 048129 156 SAKRIHLIDLAIRSGSHCIVLMQALA--TRQECPVELLKITAVGS-SSKQRMEETGKRLAYFAETWNLPFSFKI 226 (412)
Q Consensus 156 g~~~vHIID~~i~~G~QWp~LiqaLa--~R~~gpp~~LrIT~I~~-~~~~~l~~tg~rL~~fA~~lgv~Fef~~ 226 (412)
|.+.|+|.|==|....|--.||+-+- -++.++...++++.-.. ...+.-.+.-..|.+=..+.||.|++.-
T Consensus 18 ~~~~I~ieDPYir~~hQi~Nl~~F~El~vk~~~~~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI~~~~~f 91 (148)
T cd02685 18 GVTEITVEDPYIRNFHQIRNFLRFCELVVKPPCELKYIHLVTGEDEDNGKQQIEALEEIKQSLASHGVEFTWEF 91 (148)
T ss_pred CceEEEEeCccccchHHHHHHHHHHHHHhcCccceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 78899999999999999988877543 33333333344333322 1222222333344555556688877654
No 116
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=23.72 E-value=2.2e+02 Score=28.22 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=82.3
Q ss_pred HhhHHHHhhhhcC-----CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcC
Q 048129 145 AGTQAIIERVASA-----KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWN 219 (412)
Q Consensus 145 taNqaIleA~~g~-----~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lg 219 (412)
-+-.+||.+..++ ..-.+||+|.|...-=.-|+++|++| |-| +|...|+- +...|..+.+.|..- -.
T Consensus 60 RtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~--~~~--~ryvpiDv-~a~iL~~ta~ai~~~--y~- 131 (321)
T COG4301 60 RTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHR--GSL--LRYVPIDV-SASILRATATAILRE--YP- 131 (321)
T ss_pred hhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhc--CCc--ceeeeecc-cHHHHHHHHHHHHHh--CC-
Confidence 3556777776543 35678999999999999999999988 443 88999986 677788777665432 22
Q ss_pred CcEEEEEeecCCCCCCccccccCCCCceEEEeecccc--CCCCchHHHHHHHH-hcCCCEEEEEeec
Q 048129 220 LPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILL--SRTRHPDFLIKMLR-KISPCVMVIIEVE 283 (412)
Q Consensus 220 v~Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L--~~~~~~~~~L~~vr-~L~P~vvvl~E~e 283 (412)
.++.+.+. .+.+ +....+. +-|--|.|-.--.| -+|.+.+.||..++ .|+|-=-++.-.|
T Consensus 132 -~l~v~~l~-~~~~-~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 132 -GLEVNALC-GDYE-LALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred -CCeEeehh-hhHH-HHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 35567774 3322 1111111 33445555443344 56778889999996 5788776665444
No 117
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=23.65 E-value=8.9e+02 Score=25.61 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=32.8
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSF 224 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef 224 (412)
+|+|+|.|.|..=. .|+.+. | ..++|+++. +...++.+.+++. ..|+..+|
T Consensus 254 rVLDLGcGSG~Iai----aLA~~~---p-~a~VtAVDi-S~~ALe~AreNa~----~~g~rV~f 304 (423)
T PRK14966 254 RVWDLGTGSGAVAV----TVALER---P-DAFVRASDI-SPPALETARKNAA----DLGARVEF 304 (423)
T ss_pred EEEEEeChhhHHHH----HHHHhC---C-CCEEEEEEC-CHHHHHHHHHHHH----HcCCcEEE
Confidence 79999999887433 334332 2 367999987 5566776666654 34555444
No 118
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=23.65 E-value=3.9e+02 Score=26.63 Aligned_cols=49 Identities=22% Similarity=0.195 Sum_probs=32.1
Q ss_pred eEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCc
Q 048129 160 IHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLP 221 (412)
Q Consensus 160 vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~ 221 (412)
.+|+|+|.|.|. +.-.|+.+. | ..++|+++. +...++.+.++ ++..|+.
T Consensus 135 ~~VLDlG~GsG~----iai~la~~~---p-~~~V~avDi-s~~al~~A~~n----~~~~~l~ 183 (307)
T PRK11805 135 TRILDLCTGSGC----IAIACAYAF---P-DAEVDAVDI-SPDALAVAEIN----IERHGLE 183 (307)
T ss_pred CEEEEEechhhH----HHHHHHHHC---C-CCEEEEEeC-CHHHHHHHHHH----HHHhCCC
Confidence 589999999986 344455542 2 378999987 55556655555 3445653
No 119
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.63 E-value=6.3e+02 Score=23.89 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=64.2
Q ss_pred eeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccc
Q 048129 159 RIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNED 238 (412)
Q Consensus 159 ~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~ 238 (412)
.--|+|+|.|.|. =+++.--=|| =|+++|+.++ +.++...++..+ ++..++|-.-. ..++..
T Consensus 46 g~~V~DlG~GTG~------La~ga~~lGa---~~V~~vdiD~-~a~ei~r~N~~~----l~g~v~f~~~d---v~~~~~- 107 (198)
T COG2263 46 GKTVLDLGAGTGI------LAIGAALLGA---SRVLAVDIDP-EALEIARANAEE----LLGDVEFVVAD---VSDFRG- 107 (198)
T ss_pred CCEEEEcCCCcCH------HHHHHHhcCC---cEEEEEecCH-HHHHHHHHHHHh----hCCceEEEEcc---hhhcCC-
Confidence 3468999999884 2333333365 4799998743 445555544444 77777776543 333332
Q ss_pred cccCCCCceEEEeeccccCCCCchHHHHHHHHhcCCCEEEEEeecCcCCCCchHHHHHHHH
Q 048129 239 KFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVL 299 (412)
Q Consensus 239 ~l~~~~~E~laVn~~~~L~~~~~~~~~L~~vr~L~P~vvvl~E~ea~~n~~~F~~RF~eaL 299 (412)
..+ +++-|=+|......+-..||..--.++ -+|-.-..+. +-+|+.+|.+.+
T Consensus 108 ----~~d-tvimNPPFG~~~rhaDr~Fl~~Ale~s--~vVYsiH~a~--~~~f~~~~~~~~ 159 (198)
T COG2263 108 ----KFD-TVIMNPPFGSQRRHADRPFLLKALEIS--DVVYSIHKAG--SRDFVEKFAADL 159 (198)
T ss_pred ----ccc-eEEECCCCccccccCCHHHHHHHHHhh--heEEEeeccc--cHHHHHHHHHhc
Confidence 222 888999999943333334555444444 2333333333 456777766554
No 120
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=23.26 E-value=2e+02 Score=27.48 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=31.4
Q ss_pred HHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHH
Q 048129 148 QAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEET 207 (412)
Q Consensus 148 qaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~t 207 (412)
+.|++++...+.=.|+|+|.|.|. |...|+.+. + ++++|+. +...++.+
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~----~v~~iE~-d~~~~~~l 67 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K----KVTAIEI-DPRLAEIL 67 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C----cEEEEEC-CHHHHHHH
Confidence 345555544455689999999887 666777663 2 2899986 43434433
No 121
>PRK04148 hypothetical protein; Provisional
Probab=22.95 E-value=1.5e+02 Score=26.25 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=25.5
Q ss_pred HHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecC
Q 048129 150 IIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGS 198 (412)
Q Consensus 150 IleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~ 198 (412)
|.+.....+.-.|+|.|+|+|..= -+.|++. | ..+|+|+.
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~v---A~~L~~~--G----~~ViaIDi 47 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKV---AKKLKES--G----FDVIVIDI 47 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHH---HHHHHHC--C----CEEEEEEC
Confidence 444444444567999999977543 4455543 2 46889986
No 122
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=22.70 E-value=1e+02 Score=28.21 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=25.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEE
Q 048129 190 LLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKI 226 (412)
Q Consensus 190 ~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~ 226 (412)
.+|+||= ..+.|+++-..|.+ ..+|+|++|.-
T Consensus 127 ~vRVtgK---krDDLQ~viallk~--~d~~~pLQF~N 158 (161)
T PRK05412 127 QVRVTGK---KRDDLQAVIALLRK--ADLGQPLQFNN 158 (161)
T ss_pred EEEEecC---CHhHHHHHHHHHHh--ccCCCCceecc
Confidence 5999984 55779998888863 47999999963
No 123
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=22.57 E-value=47 Score=34.25 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=10.1
Q ss_pred CCeeEEEecccC
Q 048129 157 AKRIHLIDLAIR 168 (412)
Q Consensus 157 ~~~vHIID~~i~ 168 (412)
+..|||||||+.
T Consensus 165 ~n~IhiiDFGmA 176 (449)
T KOG1165|consen 165 ANVIHIIDFGMA 176 (449)
T ss_pred CceEEEEeccch
Confidence 457999999985
No 124
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.21 E-value=72 Score=32.54 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=26.7
Q ss_pred ceEEEeeccccCCCC-----chHH-HHHHHHhcCCCEEEEE-eecCcCCC
Q 048129 246 EAVAVYSPILLSRTR-----HPDF-LIKMLRKISPCVMVII-EVEANHNS 288 (412)
Q Consensus 246 E~laVn~~~~L~~~~-----~~~~-~L~~vr~L~P~vvvl~-E~ea~~n~ 288 (412)
+.-.||.++.-.+.+ ..+. ++..++.-+|++|++. -.|+..+.
T Consensus 206 ~g~~vNiPLp~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~D 255 (340)
T COG0123 206 EGNNVNIPLPPGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGD 255 (340)
T ss_pred ccceEeeecCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCC
Confidence 567777776332222 2333 5668888999999886 45555443
No 125
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=22.10 E-value=6.8e+02 Score=23.73 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=66.4
Q ss_pred HHHh-hhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 149 AIIE-RVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 149 aIle-A~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
++|. ++...+-=+++|.|.+-|. |=+.||.|. =++|+++. +...++.+.+||.+.+ + .+|...
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G~----lT~~LA~rC------d~LlavDi-s~~Al~~Ar~Rl~~~~---~--V~~~~~ 96 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIGV----LTERLAPRC------DRLLAVDI-SPRALARARERLAGLP---H--VEWIQA 96 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTSH----HHHHHGGGE------EEEEEEES--HHHHHHHHHHTTT-S---S--EEEEES
T ss_pred HHHHHhcCccccceeEecCCCccH----HHHHHHHhh------CceEEEeC-CHHHHHHHHHhcCCCC---C--eEEEEC
Confidence 4455 4677777889999998884 778899883 67999987 6678999999998764 3 345444
Q ss_pred ecCCCCCCccccccCCCCceEEEeecccc-CCCCchHHHHHHH-HhcCCCEEEEEee
Q 048129 228 LVTETKDLNEDKFDLNAGEAVAVYSPILL-SRTRHPDFLIKML-RKISPCVMVIIEV 282 (412)
Q Consensus 228 ~~~~~e~l~~~~l~~~~~E~laVn~~~~L-~~~~~~~~~L~~v-r~L~P~vvvl~E~ 282 (412)
.+.. ..+ -..=+-+|+.-++-- .....+..+++.+ ..|.|.-..++-.
T Consensus 97 dvp~---~~P----~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 97 DVPE---FWP----EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -TTT----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCC---CCC----CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3221 111 111144555444433 3334555665544 7799998888743
No 126
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=21.91 E-value=1.1e+02 Score=26.47 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=21.1
Q ss_pred HHHhhhhc-CCeeEEEecccCCccchHHHHHHHHhCCCC
Q 048129 149 AIIERVAS-AKRIHLIDLAIRSGSHCIVLMQALATRQEC 186 (412)
Q Consensus 149 aIleA~~g-~~~vHIID~~i~~G~QWp~LiqaLa~R~~g 186 (412)
.|++.++. .++++|.=||++...- +.+|+.||++.+|
T Consensus 114 ~i~~~v~~~~~~~~i~~~~~g~~~~-~~~L~~LA~~~~G 151 (155)
T PF13768_consen 114 EILDLVRRARGHIRIFTFGIGSDAD-ADFLRELARATGG 151 (155)
T ss_pred HHHHHHHhcCCCceEEEEEECChhH-HHHHHHHHHcCCC
Confidence 44444432 2456666666665544 4777777776665
No 127
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=21.83 E-value=4.8e+02 Score=24.19 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=41.2
Q ss_pred ccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 048129 170 GSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIV 227 (412)
Q Consensus 170 G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v 227 (412)
+..||-++..+..+.+.-+ .-.|+-.|. +.+.|+.++.-..+.++..|.++++..-
T Consensus 9 S~~~~~~l~~~l~~~~~l~-~~ei~L~Di-d~~RL~~~~~~~~~~~~~~~~~~~v~~t 64 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELS-GSEIVLMDI-DEERLEIVERLARRMVEEAGADLKVEAT 64 (183)
T ss_dssp SCCHHHHHHHHHHCTTTST-EEEEEEE-S-CHHHHHHHHHHHHHHHHHCTTSSEEEEE
T ss_pred hHhhHHHHHHHHhcCccCC-CcEEEEEcC-CHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4789988887776654433 234555544 5688999999999999999999988775
No 128
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=21.11 E-value=1.8e+02 Score=26.87 Aligned_cols=106 Identities=9% Similarity=0.130 Sum_probs=56.1
Q ss_pred CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCC-cEEEEEeecCCC-CCC
Q 048129 158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNL-PFSFKIVLVTET-KDL 235 (412)
Q Consensus 158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv-~Fef~~v~~~~~-e~l 235 (412)
+.-.|+|+|.|.|.-...| +.+. | .-++|||+. +.+.++.+.+++. ..++ +++|.. .+. +.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~l----a~~~---p-~~~v~gVD~-s~~~i~~a~~~~~----~~~~~~v~~~~---~d~~~~l 103 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEM----AKAN---P-DINFIGIEV-HEPGVGKALKKIE----EEGLTNLRLLC---GDAVEVL 103 (202)
T ss_pred CCCeEEEEccCCCHHHHHH----HHHC---C-CccEEEEEe-chHHHHHHHHHHH----HcCCCCEEEEe---cCHHHHH
Confidence 4467999999999765544 3332 2 367999987 4455555554443 3343 244432 233 333
Q ss_pred ccccccCCCCceEEEeecccc-CCCC-----chHHHHHHH-HhcCCCEEEEE
Q 048129 236 NEDKFDLNAGEAVAVYSPILL-SRTR-----HPDFLIKML-RKISPCVMVII 280 (412)
Q Consensus 236 ~~~~l~~~~~E~laVn~~~~L-~~~~-----~~~~~L~~v-r~L~P~vvvl~ 280 (412)
.. .+.-..=+.+++|..... ..+. ..+.+|+.+ +.|+|.-+++.
T Consensus 104 ~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 104 LD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 21 011111245555544322 1111 145677776 58999877665
No 129
>PRK03646 dadX alanine racemase; Reviewed
Probab=20.69 E-value=2.1e+02 Score=29.08 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=30.7
Q ss_pred eeEE-EecccC-Cccc---hHHHHHHHHhCCCCCCceEEEEEecC--CChHHHHHHHHHHHHHHH
Q 048129 159 RIHL-IDLAIR-SGSH---CIVLMQALATRQECPVELLKITAVGS--SSKQRMEETGKRLAYFAE 216 (412)
Q Consensus 159 ~vHI-ID~~i~-~G~Q---Wp~LiqaLa~R~~gpp~~LrIT~I~~--~~~~~l~~tg~rL~~fA~ 216 (412)
+||| ||-|++ .|+. ++.+++.+... | .|+++||-+ ...+....+.+.+.+|-+
T Consensus 118 ~vhLkvDTGM~R~G~~~~e~~~~~~~i~~~----~-~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~ 177 (355)
T PRK03646 118 DIYLKVNSGMNRLGFQPERVQTVWQQLRAM----G-NVGEMTLMSHFARADHPDGISEAMARIEQ 177 (355)
T ss_pred EEEEEeeCCCCCCCCCHHHHHHHHHHHHhC----C-CCEEEEEEcCCCCCCCCCHHHHHHHHHHH
Confidence 5786 777777 5765 55666665432 3 599999976 111111225555656543
No 130
>PLN02366 spermidine synthase
Probab=20.47 E-value=8.6e+02 Score=24.28 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=54.5
Q ss_pred EEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccc
Q 048129 161 HLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKF 240 (412)
Q Consensus 161 HIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l 240 (412)
+|+|+|.|.|. +...+++. |+ .-+||.|+. +...++.+.+.+.+....+.=| .++.+..+-.+-+.. .
T Consensus 94 rVLiIGgG~G~----~~rellk~---~~-v~~V~~VEi-D~~Vi~~ar~~f~~~~~~~~dp-Rv~vi~~Da~~~l~~--~ 161 (308)
T PLN02366 94 KVLVVGGGDGG----VLREIARH---SS-VEQIDICEI-DKMVIDVSKKFFPDLAVGFDDP-RVNLHIGDGVEFLKN--A 161 (308)
T ss_pred eEEEEcCCccH----HHHHHHhC---CC-CCeEEEEEC-CHHHHHHHHHhhhhhccccCCC-ceEEEEChHHHHHhh--c
Confidence 56888888776 56667655 33 478999986 4444555555554432111100 223332111110110 0
Q ss_pred cCCCCceEEEeeccccCCCCc--hHHHHHHH-HhcCCCEEEEEee
Q 048129 241 DLNAGEAVAVYSPILLSRTRH--PDFLIKML-RKISPCVMVIIEV 282 (412)
Q Consensus 241 ~~~~~E~laVn~~~~L~~~~~--~~~~L~~v-r~L~P~vvvl~E~ 282 (412)
.-..-+++++.+...-..+.. -..|++.+ +.|+|.-++++-.
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 011236777754332211111 24567665 7899998876543
No 131
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=20.40 E-value=2.3e+02 Score=29.63 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=62.7
Q ss_pred HHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeec
Q 048129 150 IIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLV 229 (412)
Q Consensus 150 IleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~ 229 (412)
+++.+.+...-.++|+|.|.| .++-.+|.+. | ...++||+. ....++.+.++. +..|++ ....+.
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG----~~ll~lA~~~---P-~~~~iGIEI-~~~~i~~a~~ka----~~~gL~-NV~~i~- 178 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSG----RHLLYQAKNN---P-NKLFIGIEI-HTPSIEQVLKQI----ELLNLK-NLLIIN- 178 (390)
T ss_pred HHHHhcCCCCCeEEEEcCccc----HHHHHHHHhC---C-CCCEEEEEC-CHHHHHHHHHHH----HHcCCC-cEEEEE-
Confidence 455666666678999999999 4556677664 3 367999987 444455554443 445554 133333
Q ss_pred CCCCCCccccccCCCC--ceEEEeeccccCCCCch----HHHHHHH-HhcCCCEEEEEeec
Q 048129 230 TETKDLNEDKFDLNAG--EAVAVYSPILLSRTRHP----DFLIKML-RKISPCVMVIIEVE 283 (412)
Q Consensus 230 ~~~e~l~~~~l~~~~~--E~laVn~~~~L~~~~~~----~~~L~~v-r~L~P~vvvl~E~e 283 (412)
.+...+. +. +.++ +.|.+|++.--.....+ +.+|+.+ |-|+|.-.+..--|
T Consensus 179 ~DA~~ll-~~--~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 179 YDARLLL-EL--LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCHHHhh-hh--CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 2222221 11 1222 45555643321100111 4566655 77899877665444
No 132
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=20.39 E-value=1e+02 Score=30.75 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCEEEEEeecC-------------cCCCCchHHHHHHHHHHH
Q 048129 263 DFLIKMLRKISPCVMVIIEVEA-------------NHNSQNFEDRFFEVLFHY 302 (412)
Q Consensus 263 ~~~L~~vr~L~P~vvvl~E~ea-------------~~n~~~F~~RF~eaL~~Y 302 (412)
+.+.+.++..+|+|+|++-+|+ -+||..|++-..+|-.|.
T Consensus 144 ~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~e 196 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYE 196 (287)
T ss_pred HHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcC
Confidence 4578999999999999998886 257788888888776653
No 133
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.33 E-value=1.4e+02 Score=28.60 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=24.2
Q ss_pred hhhcCCeeEEEecccCC-c-cchHHHHHHHHhCCC
Q 048129 153 RVASAKRIHLIDLAIRS-G-SHCIVLMQALATRQE 185 (412)
Q Consensus 153 A~~g~~~vHIID~~i~~-G-~QWp~LiqaLa~R~~ 185 (412)
...|.+.+||+|++-.. | ..=..+|+.+++..+
T Consensus 42 ~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~ 76 (234)
T PRK13587 42 QFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTT 76 (234)
T ss_pred hccCCCEEEEEECcccccCCcchHHHHHHHHhhcC
Confidence 34588999999998663 3 345678999987554
No 134
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=20.17 E-value=6e+02 Score=22.32 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=37.8
Q ss_pred EEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccccCCCC--ceEEEeeccccCCCCchHHHHHHH-H
Q 048129 194 TAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAG--EAVAVYSPILLSRTRHPDFLIKML-R 270 (412)
Q Consensus 194 T~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~~~~--E~laVn~~~~L~~~~~~~~~L~~v-r 270 (412)
||||. +.+-|+.+.++....+....-..+|..- +.+++. ..++ ++|+. .+.+..-..+..+|+.+ |
T Consensus 1 ~GvD~-S~~ML~~A~~~~~~~~~~~~~~i~~~~~---d~~~lp-----~~~~~fD~v~~--~~~l~~~~d~~~~l~ei~r 69 (160)
T PLN02232 1 MGLDF-SSEQLAVAATRQSLKARSCYKCIEWIEG---DAIDLP-----FDDCEFDAVTM--GYGLRNVVDRLRAMKEMYR 69 (160)
T ss_pred CeEcC-CHHHHHHHHHhhhcccccCCCceEEEEe---chhhCC-----CCCCCeeEEEe--cchhhcCCCHHHHHHHHHH
Confidence 57876 6666776665654322211123444332 233332 2222 34443 34442223445556655 7
Q ss_pred hcCCCEEEE-Eeec
Q 048129 271 KISPCVMVI-IEVE 283 (412)
Q Consensus 271 ~L~P~vvvl-~E~e 283 (412)
-|+|.-.++ .|-.
T Consensus 70 vLkpGG~l~i~d~~ 83 (160)
T PLN02232 70 VLKPGSRVSILDFN 83 (160)
T ss_pred HcCcCeEEEEEECC
Confidence 899985444 4443
No 135
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=20.14 E-value=6.1e+02 Score=26.78 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=17.8
Q ss_pred HHHHHHhcCCCEEEEEeecCcCC
Q 048129 265 LIKMLRKISPCVMVIIEVEANHN 287 (412)
Q Consensus 265 ~L~~vr~L~P~vvvl~E~ea~~n 287 (412)
+=+.++..+||++|++|-|.-.|
T Consensus 115 v~rFl~~~~P~l~Ii~EtElWPn 137 (419)
T COG1519 115 VRRFLRKWRPKLLIIMETELWPN 137 (419)
T ss_pred HHHHHHhcCCCEEEEEeccccHH
Confidence 34566788999999999997544
Done!