BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048131
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 28 TTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKK 87
+ VG GGW F ++WP+GK F+ GDIL FNY+P HNV++V+Q G +C + AK
Sbjct: 1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 88 FQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEIN 122
+ +G+DQI L G+++FIC P HC GMK+ +N
Sbjct: 61 YTSGRDQIKLPKGQSYFICNFPGHCQS-GMKIAVN 94
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 37 GWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIV 96
GW F V N GK+F+ GD+L F Y +HNV+ V+ G+ SC A+ + +G+D+I
Sbjct: 6 GWSFNV-NGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIK 64
Query: 97 LNHGKNFFICGVPTHCSDHGMKLEINVE 124
L G+N+FIC P HC GMK+ IN +
Sbjct: 65 LTRGQNYFICSFPGHCGG-GMKIAINAK 91
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 27 ATTFKVGDDGGWV----FGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPA 82
AT KVGD GW + W F GD L FNY+ + HNV+ VDQE SC +
Sbjct: 2 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 83 SDAKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINVE 124
S A + +G D I L G +F+CG+P HC G K+EI V+
Sbjct: 62 SPAASYTSGADSIPLKRPGTFYFLCGIPGHC-QLGQKVEIKVD 103
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 44 NWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKN 102
W GKTF+ GD LEF++ H+V +V ++ D+CK + T +I+LN G
Sbjct: 23 TWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQ 82
Query: 103 FFICGVPTHCSDHGMKLEINV 123
++IC V HC G KL INV
Sbjct: 83 YYICTVGDHCR-VGQKLSINV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 27 ATTFKVGDDGGWVFG-----VQNWPEGKTFKCGDILEFNYDPQRHNVIIVD-QEGHDSCK 80
+T VGD+ GW W GKTF+ GD L+FN+ HNV ++ ++ D+C
Sbjct: 3 STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62
Query: 81 PASDAKKFQTGKDQI--VLNHGKNFFICGVPTHCSDHGMKLEINV 123
+ + I + G ++F+C V THCS+ G KL INV
Sbjct: 63 FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSN-GQKLSINV 106
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 53 CGDILEFNYDPQRHNVIIVDQEGHDSCKPASD 84
C D + +DP ++ +++ DQ G P +D
Sbjct: 48 CNDKMRRFHDPAKYRIVLFDQRGSGRSTPHAD 79
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 24 IGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFN 60
+GS +TF +G+ GG+ G+ K GD+L N
Sbjct: 602 LGSRSTFAMGNMGGY--------NGRILKLGDVLFLN 630
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 31 KVGDDGGWVFGVQN-WPEGKTFKCGDILEFNYDPQRH 66
++GD+ G + N W G T CG E YD H
Sbjct: 155 RIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDH 191
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 31 KVGDDGGWVFGVQN-WPEGKTFKCGDILEFNYDPQRH 66
++GD+ G + N W G T CG E YD H
Sbjct: 155 RIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDH 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,791,430
Number of Sequences: 62578
Number of extensions: 154491
Number of successful extensions: 308
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 11
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)