Query 048131
Match_columns 124
No_of_seqs 107 out of 828
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:33:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 5.6E-41 1.2E-45 250.0 11.6 111 12-124 5-118 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 2.7E-32 5.8E-37 183.5 2.2 76 41-117 9-85 (85)
3 PRK02710 plastocyanin; Provisi 98.8 1E-07 2.3E-12 67.1 11.2 93 20-124 21-119 (119)
4 PF00127 Copper-bind: Copper b 98.6 7.7E-08 1.7E-12 65.5 5.6 74 48-124 18-99 (99)
5 TIGR03102 halo_cynanin halocya 98.3 8.7E-06 1.9E-10 57.6 9.5 88 25-124 21-115 (115)
6 TIGR02656 cyanin_plasto plasto 98.3 5.3E-06 1.1E-10 56.5 8.1 87 30-124 3-99 (99)
7 COG3794 PetE Plastocyanin [Ene 98.3 1.4E-05 3E-10 57.7 10.0 78 34-124 45-127 (128)
8 TIGR02375 pseudoazurin pseudoa 98.0 4.9E-05 1.1E-09 53.8 8.2 71 48-124 16-87 (116)
9 TIGR03095 rusti_cyanin rusticy 97.5 0.00048 1E-08 50.5 7.5 72 49-124 54-148 (148)
10 TIGR02657 amicyanin amicyanin. 97.5 0.0012 2.5E-08 43.4 7.9 69 48-124 12-83 (83)
11 PF06525 SoxE: Sulfocyanin (So 97.3 0.0015 3.3E-08 50.2 7.5 72 52-124 91-186 (196)
12 KOG3858 Ephrin, ligand for Eph 96.1 0.027 5.9E-07 44.4 7.0 74 50-123 46-159 (233)
13 TIGR03094 sulfo_cyanin sulfocy 96.1 0.023 5E-07 43.5 6.4 24 99-123 161-184 (195)
14 PF00812 Ephrin: Ephrin; Inte 95.9 0.0042 9E-08 45.7 1.7 74 50-123 25-143 (145)
15 COG4454 Uncharacterized copper 94.9 0.049 1.1E-06 40.6 4.4 76 46-124 62-157 (158)
16 TIGR03096 nitroso_cyanin nitro 94.0 0.17 3.7E-06 36.8 5.4 56 47-113 61-123 (135)
17 PF13473 Cupredoxin_1: Cupredo 92.3 0.2 4.3E-06 33.8 3.6 55 48-111 36-97 (104)
18 PLN02604 oxidoreductase 90.8 1.7 3.6E-05 38.1 8.5 84 38-124 46-143 (566)
19 PLN02354 copper ion binding / 90.2 4.1 8.9E-05 35.7 10.4 72 48-124 59-145 (552)
20 TIGR02695 azurin azurin. Azuri 89.3 2.3 5E-05 30.6 6.8 28 93-122 91-124 (125)
21 TIGR02376 Cu_nitrite_red nitri 87.2 1.8 3.8E-05 35.1 5.7 73 48-124 60-145 (311)
22 PRK02888 nitrous-oxide reducta 86.2 1.8 4E-05 38.7 5.6 66 48-124 556-633 (635)
23 PF07172 GRP: Glycine rich pro 84.4 0.41 8.9E-06 32.7 0.7 25 1-27 1-25 (95)
24 PF07732 Cu-oxidase_3: Multico 82.3 0.75 1.6E-05 32.1 1.3 76 48-124 27-114 (117)
25 PRK10378 inactive ferrous ion 81.4 6.5 0.00014 33.1 6.8 26 93-123 90-115 (375)
26 TIGR02866 CoxB cytochrome c ox 80.1 5.7 0.00012 30.0 5.6 84 29-124 93-191 (201)
27 PF00116 COX2: Cytochrome C ox 78.3 4.2 9E-05 28.5 4.1 64 48-123 47-119 (120)
28 cd02859 AMPKbeta_GBD_like AMP- 74.5 14 0.00029 23.8 5.5 46 56-104 3-50 (79)
29 PLN02991 oxidoreductase 73.9 51 0.0011 29.0 10.4 76 48-124 60-146 (543)
30 PRK09723 putative fimbrial-lik 73.5 45 0.00098 28.7 9.6 57 11-69 11-68 (421)
31 TIGR03388 ascorbase L-ascorbat 71.0 10 0.00022 33.1 5.4 74 48-124 33-120 (541)
32 cd06555 ASCH_PF0470_like ASC-1 68.6 5.2 0.00011 28.0 2.5 14 49-62 30-43 (109)
33 PLN02835 oxidoreductase 68.5 69 0.0015 28.1 10.0 76 48-124 61-147 (539)
34 PF10377 ATG11: Autophagy-rela 62.4 9 0.00019 27.4 2.9 18 49-66 41-58 (129)
35 PF02839 CBM_5_12: Carbohydrat 60.4 5.4 0.00012 22.3 1.2 17 43-59 2-18 (41)
36 PF09792 But2: Ubiquitin 3 bin 58.4 35 0.00076 24.7 5.4 27 94-123 100-126 (143)
37 TIGR01480 copper_res_A copper- 57.8 35 0.00075 30.3 6.3 83 38-124 488-587 (587)
38 PF12961 DUF3850: Domain of Un 56.4 7.9 0.00017 25.3 1.6 13 48-60 26-38 (72)
39 PLN00044 multi-copper oxidase- 54.6 33 0.00073 30.5 5.6 71 49-124 62-147 (596)
40 TIGR02228 sigpep_I_arch signal 52.6 42 0.00091 24.6 5.1 26 48-73 58-87 (158)
41 TIGR01480 copper_res_A copper- 52.3 40 0.00086 30.0 5.7 75 47-124 76-161 (587)
42 PF11008 DUF2846: Protein of u 51.8 62 0.0013 22.1 5.6 59 46-106 40-100 (117)
43 PLN02191 L-ascorbate oxidase 51.6 37 0.00081 29.9 5.5 74 48-124 55-142 (574)
44 COG1622 CyoA Heme/copper-type 48.6 17 0.00037 28.8 2.6 29 94-124 180-211 (247)
45 PF05382 Amidase_5: Bacterioph 47.5 62 0.0013 23.7 5.3 36 49-84 74-114 (145)
46 COG3241 Azurin [Energy product 47.4 19 0.00041 26.3 2.5 29 92-122 114-148 (151)
47 PLN02168 copper ion binding / 47.3 2E+02 0.0043 25.3 10.7 76 48-124 58-144 (545)
48 KOG3416 Predicted nucleic acid 44.7 21 0.00045 25.9 2.4 31 29-60 40-71 (134)
49 PF02362 B3: B3 DNA binding do 43.7 27 0.00058 22.6 2.6 19 46-64 69-87 (100)
50 KOG1546 Metacaspase involved i 43.3 16 0.00035 30.6 1.8 30 51-82 135-169 (362)
51 MTH00047 COX2 cytochrome c oxi 40.3 35 0.00076 26.0 3.2 28 94-123 159-189 (194)
52 TIGR03389 laccase laccase, pla 39.3 95 0.0021 27.0 6.0 75 48-124 35-121 (539)
53 PF14326 DUF4384: Domain of un 36.3 48 0.001 21.3 2.9 16 50-65 2-17 (83)
54 COG4043 Preprotein translocase 36.1 16 0.00035 25.6 0.7 16 47-62 30-45 (111)
55 PF11604 CusF_Ec: Copper bindi 35.8 24 0.00051 22.3 1.4 22 43-64 35-56 (70)
56 MTH00140 COX2 cytochrome c oxi 32.6 56 0.0012 25.3 3.2 27 94-123 183-213 (228)
57 COG1430 Uncharacterized conser 31.2 32 0.0007 24.6 1.6 21 43-63 103-123 (126)
58 PF06462 Hyd_WA: Propeller; I 30.3 95 0.0021 16.6 3.2 24 94-118 3-27 (32)
59 KOG2315 Predicted translation 29.9 94 0.002 27.7 4.4 64 43-106 207-277 (566)
60 PLN02792 oxidoreductase 29.7 1.6E+02 0.0035 25.9 5.9 75 48-123 48-133 (536)
61 PF00686 CBM_20: Starch bindin 29.1 59 0.0013 21.2 2.5 36 27-62 16-67 (96)
62 cd04491 SoSSB_OBF SoSSB_OBF: A 29.0 52 0.0011 20.7 2.2 32 28-60 25-58 (82)
63 COG1188 Ribosome-associated he 26.6 75 0.0016 22.0 2.7 19 47-65 45-63 (100)
64 PF02933 CDC48_2: Cell divisio 26.4 58 0.0013 19.8 2.0 16 48-63 16-31 (64)
65 COG3627 PhnJ Uncharacterized e 26.3 47 0.001 26.4 1.8 21 93-113 257-278 (291)
66 PTZ00047 cytochrome c oxidase 26.3 89 0.0019 23.4 3.2 27 95-123 117-146 (162)
67 TIGR01451 B_ant_repeat conserv 26.1 54 0.0012 19.5 1.7 17 46-62 3-19 (53)
68 TIGR01653 lactococcin_972 bact 25.9 72 0.0016 21.7 2.5 19 63-81 53-72 (92)
69 PF13511 DUF4124: Domain of un 24.8 39 0.00085 20.1 0.9 17 21-37 7-23 (60)
70 PF01345 DUF11: Domain of unkn 24.8 50 0.0011 20.5 1.5 21 42-62 28-48 (76)
71 MTH00117 COX2 cytochrome c oxi 24.6 1.1E+02 0.0025 23.6 3.7 28 94-123 183-213 (227)
72 PF04225 OapA: Opacity-associa 24.5 88 0.0019 20.5 2.7 22 49-71 41-62 (85)
73 PLN02311 chalcone isomerase 24.1 1E+02 0.0023 24.8 3.5 26 48-73 199-224 (271)
74 MTH00154 COX2 cytochrome c oxi 24.1 1.1E+02 0.0024 23.7 3.6 27 94-123 183-213 (227)
75 MTH00129 COX2 cytochrome c oxi 23.6 93 0.002 24.2 3.1 28 94-123 183-213 (230)
76 PF14478 DUF4430: Domain of un 23.4 45 0.00098 20.6 1.1 25 36-60 39-68 (68)
77 PRK10883 FtsI repressor; Provi 23.4 1.9E+02 0.0042 24.8 5.2 71 47-124 77-164 (471)
78 PRK03760 hypothetical protein; 23.0 41 0.00089 23.5 0.9 19 43-61 98-116 (117)
79 MTH00168 COX2 cytochrome c oxi 23.0 1.1E+02 0.0023 23.7 3.2 27 94-123 183-213 (225)
80 PF15240 Pro-rich: Proline-ric 22.8 47 0.001 25.3 1.2 12 13-24 5-16 (179)
81 PF15436 PGBA_N: Plasminogen-b 22.7 50 0.0011 25.9 1.4 33 49-82 78-111 (218)
82 KOG3342 Signal peptidase I [In 22.6 27 0.00058 26.4 -0.1 22 50-71 77-102 (180)
83 MTH00139 COX2 cytochrome c oxi 22.5 1E+02 0.0022 23.8 3.1 27 94-123 183-213 (226)
84 smart00495 ChtBD3 Chitin-bindi 22.4 70 0.0015 17.6 1.6 17 43-59 2-18 (41)
85 TIGR02594 conserved hypothetic 21.8 54 0.0012 23.2 1.3 21 50-71 73-93 (129)
86 PF04945 YHS: YHS domain; Int 21.7 64 0.0014 18.4 1.4 19 90-108 11-30 (47)
87 PRK11546 zraP zinc resistance 21.1 73 0.0016 23.4 1.9 27 12-39 11-37 (143)
88 COG5569 Uncharacterized conser 21.0 82 0.0018 22.0 2.0 21 43-63 76-96 (108)
89 MTH00038 COX2 cytochrome c oxi 20.9 1.3E+02 0.0029 23.3 3.5 27 94-123 183-213 (229)
90 KOG4134 DNA-dependent RNA poly 20.8 60 0.0013 25.9 1.5 62 55-121 56-118 (253)
91 cd05829 Sortase_E Sortase E (S 20.6 1.7E+02 0.0037 20.8 3.7 23 49-71 71-93 (144)
92 TIGR03511 GldH_lipo gliding mo 20.5 3.6E+02 0.0077 19.8 6.6 27 54-80 41-73 (156)
93 PF09953 DUF2187: Uncharacteri 20.4 1.1E+02 0.0024 19.0 2.3 12 49-60 2-13 (57)
94 PF11442 DUF2826: Protein of u 20.3 88 0.0019 22.9 2.1 22 20-41 16-37 (161)
95 TIGR01433 CyoA cytochrome o ub 20.2 1.2E+02 0.0025 23.6 3.0 29 94-124 182-213 (226)
96 MTH00098 COX2 cytochrome c oxi 20.2 1.3E+02 0.0029 23.3 3.3 27 94-123 183-213 (227)
97 PF12195 End_beta_barrel: Beta 20.0 43 0.00092 22.3 0.4 29 49-77 26-60 (83)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=250.00 Aligned_cols=111 Identities=34% Similarity=0.660 Sum_probs=100.6
Q ss_pred HHHHHHHHhhcccceeEEEEecCCCCCCc--cccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccc
Q 048131 12 VVTVLLLLMHCNIGSATTFKVGDDGGWVF--GVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQ 89 (124)
Q Consensus 12 ~~~~~~~~~~~~~a~a~~~~VG~~~gW~~--~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~ 89 (124)
+|++++++++...+++++|+|||+.||+. +|++|+++|+|++||+|+|+|+++.|+|+||++++|++|+.++|+..++
T Consensus 5 ~l~~~~~~~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~t 84 (167)
T PLN03148 5 LLFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWT 84 (167)
T ss_pred HHHHHHHHHhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceec
Confidence 33444444556678899999999999975 5799999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131 90 TGKDQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 90 ~G~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~ 124 (124)
+|++.|+|+ +|+|||||+ ++||+ +||||.|+|+
T Consensus 85 sG~d~v~L~~~G~~YFIcg-~ghC~-~GmKl~I~V~ 118 (167)
T PLN03148 85 SGKDFIPLNKAKRYYFICG-NGQCF-NGMKVTILVH 118 (167)
T ss_pred CCCcEEEecCCccEEEEcC-CCccc-cCCEEEEEEc
Confidence 999999999 899999999 69999 9999999985
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=2.7e-32 Score=183.49 Aligned_cols=76 Identities=42% Similarity=0.925 Sum_probs=62.8
Q ss_pred cccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-CcceEEEeCCCCCccCCCc
Q 048131 41 GVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKNFFICGVPTHCSDHGM 117 (124)
Q Consensus 41 ~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~~yfic~~~~hC~~~Gm 117 (124)
.|++||++++|++||+|+|+|+++.|+|+||++++|++|+.++|+..+.+|++.|+|+ ||++||||++++||+ +||
T Consensus 9 ~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~HC~-~Gq 85 (85)
T PF02298_consen 9 NYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGHCQ-KGQ 85 (85)
T ss_dssp HHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTTTT-TT-
T ss_pred chhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCccc-ccC
Confidence 3589999999999999999999999999999999999999999999999999999999 899999999999999 998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.82 E-value=1e-07 Score=67.14 Aligned_cols=93 Identities=26% Similarity=0.391 Sum_probs=58.8
Q ss_pred hhcccceeEEE--EecCCCCC-CccccCCCCCCeeeeCCEEEEEeC-CCCCeEEEECcCCCCCCCCCCCCcccccCC-cE
Q 048131 20 MHCNIGSATTF--KVGDDGGW-VFGVQNWPEGKTFKCGDILEFNYD-PQRHNVIIVDQEGHDSCKPASDAKKFQTGK-DQ 94 (124)
Q Consensus 20 ~~~~~a~a~~~--~VG~~~gW-~~~~~~Wa~~~~f~vGD~L~F~y~-~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~-~~ 94 (124)
+.+..+.+.++ .+|.++|+ .+.+ +..++++||+|.|..+ ...|++..-.. +....++ .....|. .+
T Consensus 21 ~~~~~a~a~~~~V~~~~~~~~~~F~P----~~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~~--~~~~pg~t~~ 91 (119)
T PRK02710 21 LGVSSASAETVEVKMGSDAGMLAFEP----STLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHKD--LAFAPGESWE 91 (119)
T ss_pred hcccccccceEEEEEccCCCeeEEeC----CEEEEcCCCEEEEEECCCCCceEEecCC---ccccccc--cccCCCCEEE
Confidence 33444455554 46655444 3333 3578999999999874 45799864211 1111111 1123343 47
Q ss_pred EEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131 95 IVLN-HGKNFFICGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 95 v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~ 124 (124)
++++ ||.|-|+|. .|=+ .||+..|+|+
T Consensus 92 ~tF~~~G~y~y~C~--~H~~-~gM~G~I~V~ 119 (119)
T PRK02710 92 ETFSEAGTYTYYCE--PHRG-AGMVGKITVE 119 (119)
T ss_pred EEecCCEEEEEEcC--CCcc-CCcEEEEEEC
Confidence 7787 899999999 6988 9999999996
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.63 E-value=7.7e-08 Score=65.46 Aligned_cols=74 Identities=27% Similarity=0.406 Sum_probs=52.0
Q ss_pred CCeeeeCCEEEEEe-CCCCCeEEEECcCC--CCCCCCCCC---CcccccCCc-EEEeC-CcceEEEeCCCCCccCCCcEE
Q 048131 48 GKTFKCGDILEFNY-DPQRHNVIIVDQEG--HDSCKPASD---AKKFQTGKD-QIVLN-HGKNFFICGVPTHCSDHGMKL 119 (124)
Q Consensus 48 ~~~f~vGD~L~F~y-~~~~h~V~~V~~~~--y~~C~~~~~---~~~~~~G~~-~v~l~-~G~~yfic~~~~hC~~~GmKl 119 (124)
..++++||++.|.. +...|++...+... -.......+ ......|.+ .++++ +|.|.|+|. | |.. .||+.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~-~GM~G 94 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYE-AGMVG 94 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGG-TTSEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-Ccc-cCCEE
Confidence 47899999999999 46789999985210 011111111 112334443 67777 899999999 8 999 99999
Q ss_pred EEEeC
Q 048131 120 EINVE 124 (124)
Q Consensus 120 ~I~V~ 124 (124)
.|.|+
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99996
No 5
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.31 E-value=8.7e-06 Score=57.58 Aligned_cols=88 Identities=24% Similarity=0.408 Sum_probs=60.3
Q ss_pred ceeEEEEec--CC-CCCCccccCCCCCCeeeeCCEEEEEeCC--CCCeEEEECcCCCCCCCCCCCCcccccC-CcEEEeC
Q 048131 25 GSATTFKVG--DD-GGWVFGVQNWPEGKTFKCGDILEFNYDP--QRHNVIIVDQEGHDSCKPASDAKKFQTG-KDQIVLN 98 (124)
Q Consensus 25 a~a~~~~VG--~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~--~~h~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~l~ 98 (124)
++..+..|| ++ .+..+.|. ..++++||+|.|.++. ..|+|.--+...|+. .. .....| ..+++++
T Consensus 21 ~~~~~v~~G~~~~~g~~~F~P~----~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~-~~~~~G~t~s~Tf~ 91 (115)
T TIGR03102 21 QDEVTVDVGAEANGGGFAFDPP----AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE-RVSEEGTTYEHTFE 91 (115)
T ss_pred CceEEEEecccCCCCceeEeCC----EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc-cccCCCCEEEEEec
Confidence 355677888 32 23555543 3799999999999863 579998543344441 11 112234 3478888
Q ss_pred -CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131 99 -HGKNFFICGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 99 -~G~~yfic~~~~hC~~~GmKl~I~V~ 124 (124)
||.|-|+|.. |=. .|||-.|.|+
T Consensus 92 ~~G~Y~Y~C~p--H~~-~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCVP--HEA-LGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEccC--CCC-CCCEEEEEEC
Confidence 9999999994 766 7999999996
No 6
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.30 E-value=5.3e-06 Score=56.47 Aligned_cols=87 Identities=24% Similarity=0.394 Sum_probs=55.5
Q ss_pred EEecC-CCCCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECcCCCCC------CCCCCCCcccccCCc-EEEeC-C
Q 048131 30 FKVGD-DGGWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQEGHDS------CKPASDAKKFQTGKD-QIVLN-H 99 (124)
Q Consensus 30 ~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~~~y~~------C~~~~~~~~~~~G~~-~v~l~-~ 99 (124)
..+|. +.+-.+.|+ ..++++||++.|..+. ..|++...+.. ... ............|.+ +++++ |
T Consensus 3 v~~g~~~g~~~F~P~----~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~ 77 (99)
T TIGR02656 3 VKMGADKGALVFEPA----KISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTP 77 (99)
T ss_pred EEEecCCCceeEeCC----EEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCC
Confidence 45564 333444443 4789999999999753 57999864321 000 011000011233433 67777 8
Q ss_pred cceEEEeCCCCCccCCCcEEEEEeC
Q 048131 100 GKNFFICGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 100 G~~yfic~~~~hC~~~GmKl~I~V~ 124 (124)
|+|-|+|. +|++ .||+..|.|+
T Consensus 78 G~y~y~C~--~H~~-aGM~G~I~V~ 99 (99)
T TIGR02656 78 GTYTFYCE--PHRG-AGMVGKITVE 99 (99)
T ss_pred EEEEEEcC--Cccc-cCCEEEEEEC
Confidence 99999999 7999 9999999986
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.27 E-value=1.4e-05 Score=57.66 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=55.6
Q ss_pred CCCCCCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECcCCCCCCCCCCCCcccccC---CcEEEeC-CcceEEEeCC
Q 048131 34 DDGGWVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQEGHDSCKPASDAKKFQTG---KDQIVLN-HGKNFFICGV 108 (124)
Q Consensus 34 ~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~-~G~~yfic~~ 108 (124)
+...-.+.|+ ..++++||++.|.+..+ .|+|.-....+ + .....+..+ ..+.+++ ||.|.|+|.-
T Consensus 45 ~~~~~vF~PA----~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~-----~-~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P 114 (128)
T COG3794 45 DIGAMVFEPA----EVTVKPGDTVTWVNTDSVGHNVTAVGGMD-----P-EGSGTLKAGINESFTHTFETPGEYTYYCTP 114 (128)
T ss_pred cCcceeEcCc----EEEECCCCEEEEEECCCCCceEEEeCCCC-----c-ccccccccCCCcceEEEecccceEEEEecc
Confidence 3344555554 47999999999999987 89999874441 1 111122222 2367777 9999999994
Q ss_pred CCCccCCCcEEEEEeC
Q 048131 109 PTHCSDHGMKLEINVE 124 (124)
Q Consensus 109 ~~hC~~~GmKl~I~V~ 124 (124)
|=. .|||-.|.|+
T Consensus 115 --H~~-~gM~G~IvV~ 127 (128)
T COG3794 115 --HPG-MGMKGKIVVG 127 (128)
T ss_pred --CCC-CCcEEEEEeC
Confidence 878 9999999985
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.00 E-value=4.9e-05 Score=53.80 Aligned_cols=71 Identities=21% Similarity=0.160 Sum_probs=49.4
Q ss_pred CCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131 48 GKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~ 124 (124)
..++++||+|.|.+....|+|.......-+ ..++...-.+..-+++++ +|.|-|.|. .|=. .||+..|+|.
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~---g~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~-~GM~G~V~Vg 87 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPE---GAEAFKSKINEEYTVTVTEEGVYGVKCT--PHYG-MGMVALIQVG 87 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcC---CcccccCCCCCEEEEEeCCCEEEEEEcC--CCcc-CCCEEEEEEC
Confidence 478999999999998778998864321110 011111111223478888 999999999 5999 9999999983
No 9
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.54 E-value=0.00048 Score=50.47 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=48.4
Q ss_pred CeeeeCCEEEEEeCCC----CCeEEEECcC-CCC------------CCCCCCCCcccccC-----CcEEEeC-CcceEEE
Q 048131 49 KTFKCGDILEFNYDPQ----RHNVIIVDQE-GHD------------SCKPASDAKKFQTG-----KDQIVLN-HGKNFFI 105 (124)
Q Consensus 49 ~~f~vGD~L~F~y~~~----~h~V~~V~~~-~y~------------~C~~~~~~~~~~~G-----~~~v~l~-~G~~yfi 105 (124)
.+++.||++.|...+. .|.....+.. .+. .|.... ...+| .-+++++ +|+|||.
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p---~~~~g~~~~~~~tf~f~~aGtywyh 130 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLP---PPKSGKFGYTDFTYHFSTAGTYWYL 130 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccC---CCCCCccceeEEEEECCCCeEEEEE
Confidence 4678999999988753 5777765321 111 111110 11122 2366667 8999999
Q ss_pred eCCCCCccCCCcEEEEEeC
Q 048131 106 CGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 106 c~~~~hC~~~GmKl~I~V~ 124 (124)
|..++|=+ .||.-.|.|+
T Consensus 131 C~~pgH~~-~GM~G~iiV~ 148 (148)
T TIGR03095 131 CTYPGHAE-NGMYGKIVVK 148 (148)
T ss_pred cCChhHHH-CCCEEEEEEC
Confidence 99999998 9999999986
No 10
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.46 E-value=0.0012 Score=43.44 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=46.2
Q ss_pred CCeeeeCCEEEEEeCCC-CCeEEEECcCCCCCCCCCCCCcccccCC-cEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131 48 GKTFKCGDILEFNYDPQ-RHNVIIVDQEGHDSCKPASDAKKFQTGK-DQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~-~h~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~ 124 (124)
..++++||+|.|..+.. .|+|...+..+ ..=+...+ ....|. .+++++ ||+|-|.|... ..||-.|.||
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~H-----p~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPH-----PFMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCC-----CCCeEEEEEC
Confidence 46889999999998843 79998653221 11001111 123343 378888 99999999973 5699999986
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.26 E-value=0.0015 Score=50.18 Aligned_cols=72 Identities=24% Similarity=0.418 Sum_probs=45.8
Q ss_pred eeCCEEEEEeCCC---CCeEEEE-CcCCCCCCCCC---CCCc--------c-c----ccCCc-EE---EeCCcceEEEeC
Q 048131 52 KCGDILEFNYDPQ---RHNVIIV-DQEGHDSCKPA---SDAK--------K-F----QTGKD-QI---VLNHGKNFFICG 107 (124)
Q Consensus 52 ~vGD~L~F~y~~~---~h~V~~V-~~~~y~~C~~~---~~~~--------~-~----~~G~~-~v---~l~~G~~yfic~ 107 (124)
-.|-++.|++.+. .|++..| +...+.++..- +.+. . . ..|.. .. .|++|.||++|+
T Consensus 91 PAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC~ 170 (196)
T PF06525_consen 91 PAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVCG 170 (196)
T ss_pred cCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEcc
Confidence 4688888888643 6999998 43333333211 1110 0 0 12322 22 233799999999
Q ss_pred CCCCccCCCcEEEEEeC
Q 048131 108 VPTHCSDHGMKLEINVE 124 (124)
Q Consensus 108 ~~~hC~~~GmKl~I~V~ 124 (124)
.+||=+ +||-..+.|.
T Consensus 171 ipGHA~-sGMw~~LiVs 186 (196)
T PF06525_consen 171 IPGHAE-SGMWGVLIVS 186 (196)
T ss_pred CCChhh-cCCEEEEEEe
Confidence 999999 9999988873
No 12
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.09 E-value=0.027 Score=44.39 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=44.0
Q ss_pred eeeeCCEEEEEe---CCC------CCeEEEECcCCCCCCCC-CCCCccc------------------ccCCcEEEeCCc-
Q 048131 50 TFKCGDILEFNY---DPQ------RHNVIIVDQEGHDSCKP-ASDAKKF------------------QTGKDQIVLNHG- 100 (124)
Q Consensus 50 ~f~vGD~L~F~y---~~~------~h~V~~V~~~~y~~C~~-~~~~~~~------------------~~G~~~v~l~~G- 100 (124)
-+++||.|-+-= +.+ ..=+++|++++|+.|+. +.+...+ +.-...+.+.||
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG~ 125 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPGH 125 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCCC
Confidence 356788887753 322 12457889999999996 4332211 111223455577
Q ss_pred ceEEEeC-----------CCCCccCCCcEEEEEe
Q 048131 101 KNFFICG-----------VPTHCSDHGMKLEINV 123 (124)
Q Consensus 101 ~~yfic~-----------~~~hC~~~GmKl~I~V 123 (124)
+|||||+ .++-|....||+.+.|
T Consensus 126 ~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V 159 (233)
T KOG3858|consen 126 TYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKV 159 (233)
T ss_pred eEEEEeCCCccccccchhhCCEeccCCceEEEEe
Confidence 5777765 2355665568887765
No 13
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=96.09 E-value=0.023 Score=43.48 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=22.2
Q ss_pred CcceEEEeCCCCCccCCCcEEEEEe
Q 048131 99 HGKNFFICGVPTHCSDHGMKLEINV 123 (124)
Q Consensus 99 ~G~~yfic~~~~hC~~~GmKl~I~V 123 (124)
||.||++|+.+||-+ .||=..+.|
T Consensus 161 ~G~YwlvCgipGHAe-sGMw~~lIV 184 (195)
T TIGR03094 161 AGKYWLVCGITGHAE-SGMWAVVIV 184 (195)
T ss_pred CeeEEEEcccCChhh-cCcEEEEEE
Confidence 799999999999999 999877766
No 14
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=95.94 E-value=0.0042 Score=45.65 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=44.7
Q ss_pred eeeeCCEEEEEeCC---C--------CCeEEEECcCCCCCCCCC-CCCc------ccc-cCCcEEEe-------------
Q 048131 50 TFKCGDILEFNYDP---Q--------RHNVIIVDQEGHDSCKPA-SDAK------KFQ-TGKDQIVL------------- 97 (124)
Q Consensus 50 ~f~vGD~L~F~y~~---~--------~h~V~~V~~~~y~~C~~~-~~~~------~~~-~G~~~v~l------------- 97 (124)
.+++||.|-+-=+. . ...+++|++++|+.|+.. .+.. +.. .|+..|++
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 56789999886542 2 356888999999999963 3321 111 13333332
Q ss_pred -CCc-ceEEEeCC-----------CCCccCCCcEEEEEe
Q 048131 98 -NHG-KNFFICGV-----------PTHCSDHGMKLEINV 123 (124)
Q Consensus 98 -~~G-~~yfic~~-----------~~hC~~~GmKl~I~V 123 (124)
.|| .||||++= +|-|....|||.+.|
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v 143 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKV 143 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEEC
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEec
Confidence 266 57788651 233886789999987
No 15
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.049 Score=40.60 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=47.7
Q ss_pred CCCCeeeeCCEEEEEeCCC---CCeEEEECcCC-----CCC--------CCCCCCCcccccC---CcEEEeC-CcceEEE
Q 048131 46 PEGKTFKCGDILEFNYDPQ---RHNVIIVDQEG-----HDS--------CKPASDAKKFQTG---KDQIVLN-HGKNFFI 105 (124)
Q Consensus 46 a~~~~f~vGD~L~F~y~~~---~h~V~~V~~~~-----y~~--------C~~~~~~~~~~~G---~~~v~l~-~G~~yfi 105 (124)
+++..++.|.+++|.-... .|....- +++ +.. -+..+. .....| .-++.++ +|+|=|+
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~-~~~~~~~~~~~~~~~~Dme~d~~~~-v~L~PG~s~elvv~ft~~g~ye~~ 139 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMD-APDKNLEHVTHMILADDMEHDDPNT-VTLAPGKSGELVVVFTGAGKYEFA 139 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEecc-CccccchhHHHhhhCCccccCCcce-eEeCCCCcEEEEEEecCCccEEEE
Confidence 3456788999998877643 3444332 111 100 011111 122333 3367777 8999999
Q ss_pred eCCCCCccCCCcEEEEEeC
Q 048131 106 CGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 106 c~~~~hC~~~GmKl~I~V~ 124 (124)
|.+|+|-+ .||...|+|.
T Consensus 140 C~iPGHy~-AGM~g~itV~ 157 (158)
T COG4454 140 CNIPGHYE-AGMVGEITVS 157 (158)
T ss_pred ecCCCccc-CCcEEEEEeC
Confidence 99999999 9999999985
No 16
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=93.95 E-value=0.17 Score=36.80 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=34.4
Q ss_pred CCCeeeeCCEEEEEeCC---CCCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCCCCcc
Q 048131 47 EGKTFKCGDILEFNYDP---QRHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPTHCS 113 (124)
Q Consensus 47 ~~~~f~vGD~L~F~y~~---~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~hC~ 113 (124)
+..+++.||.+.+.+.+ -.|++.. .+|. .+ .....|.+ +|+.+ ||.|.|.|+. ||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 45688999999887753 2365544 2232 11 12233433 45556 8999999997 665
No 17
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=92.33 E-value=0.2 Score=33.78 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=27.3
Q ss_pred CCeeeeCC--EEEEEeCC-CCCeEEEECcCCCCCCCCCCCCcccccCCc-EEEe--C-CcceEEEeCCCCC
Q 048131 48 GKTFKCGD--ILEFNYDP-QRHNVIIVDQEGHDSCKPASDAKKFQTGKD-QIVL--N-HGKNFFICGVPTH 111 (124)
Q Consensus 48 ~~~f~vGD--~L~F~y~~-~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~-~v~l--~-~G~~yfic~~~~h 111 (124)
..+++.|+ +|+|+... ..|++.. ++ .+.......|.+ ++++ . ||.|=|.|+.+.+
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i-~~--------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~ 97 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVI-PD--------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN 97 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEE-GG--------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEE-CC--------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc
Confidence 47899999 55555442 3566644 22 111122333433 4555 5 8999999997654
No 18
>PLN02604 oxidoreductase
Probab=90.83 E-value=1.7 Score=38.11 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=49.1
Q ss_pred CCccccCCCCCCeeeeCCEEEEEeCCCC---------CeEEEECcCCCCCCCCCC-CCcccccCCc---EEEeC-CcceE
Q 048131 38 WVFGVQNWPEGKTFKCGDILEFNYDPQR---------HNVIIVDQEGHDSCKPAS-DAKKFQTGKD---QIVLN-HGKNF 103 (124)
Q Consensus 38 W~~~~~~Wa~~~~f~vGD~L~F~y~~~~---------h~V~~V~~~~y~~C~~~~-~~~~~~~G~~---~v~l~-~G~~y 103 (124)
|+++-.-.....+++.||+++++..+.. |.+.+.....+|. .+. .......|.+ .|+++ +|++|
T Consensus 46 ~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG--~~~~tq~~i~pg~s~~y~f~~~~~Gt~w 123 (566)
T PLN02604 46 ITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG--TEGVTQCPILPGETFTYEFVVDRPGTYL 123 (566)
T ss_pred EEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC--CCccccCccCCCCeEEEEEEcCCCEEEE
Confidence 4433233345678999999999886431 2332221111111 000 0012233433 56666 89999
Q ss_pred EEeCCCCCccCCCcEEEEEeC
Q 048131 104 FICGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 104 fic~~~~hC~~~GmKl~I~V~ 124 (124)
|=|-...|-. .||.-.|.|+
T Consensus 124 yH~H~~~q~~-~Gl~G~liV~ 143 (566)
T PLN02604 124 YHAHYGMQRE-AGLYGSIRVS 143 (566)
T ss_pred EeeCcHHHHh-CCCeEEEEEE
Confidence 9999988988 9999988874
No 19
>PLN02354 copper ion binding / oxidoreductase
Probab=90.23 E-value=4.1 Score=35.73 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=45.6
Q ss_pred CCeeeeCCEEEEEeCCC--------CCeEEEECcCCCC-----CCCCCCCCcccccCCcEEEe-C-CcceEEEeCCCCCc
Q 048131 48 GKTFKCGDILEFNYDPQ--------RHNVIIVDQEGHD-----SCKPASDAKKFQTGKDQIVL-N-HGKNFFICGVPTHC 112 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~--------~h~V~~V~~~~y~-----~C~~~~~~~~~~~G~~~v~l-~-~G~~yfic~~~~hC 112 (124)
..++..||+|+.+..+. -|.+.|-.....| .| |+....+=.-.|++ + +|++||=+-...+-
T Consensus 59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~ 134 (552)
T PLN02354 59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHR 134 (552)
T ss_pred cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCcccee
Confidence 35789999999887643 3566554222222 23 22222111226776 4 69999999887777
Q ss_pred cCCCcEEEEEeC
Q 048131 113 SDHGMKLEINVE 124 (124)
Q Consensus 113 ~~~GmKl~I~V~ 124 (124)
. .||.-.|.|+
T Consensus 135 ~-~Gl~G~lII~ 145 (552)
T PLN02354 135 A-AGGFGGLRVN 145 (552)
T ss_pred c-CCccceEEEc
Confidence 7 8888888775
No 20
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=89.25 E-value=2.3 Score=30.59 Aligned_cols=28 Identities=21% Similarity=0.553 Sum_probs=20.2
Q ss_pred cEEEeC-----Ccc-eEEEeCCCCCccCCCcEEEEE
Q 048131 93 DQIVLN-----HGK-NFFICGVPTHCSDHGMKLEIN 122 (124)
Q Consensus 93 ~~v~l~-----~G~-~yfic~~~~hC~~~GmKl~I~ 122 (124)
++|+++ +|. |=|+|++|||=. .||-.+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~--~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA--MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH--hceEEEe
Confidence 355553 465 779999999976 5887654
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=87.18 E-value=1.8 Score=35.12 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=44.4
Q ss_pred CCeeeeCCEEEEEeCCC-----CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCC----CCCccC
Q 048131 48 GKTFKCGDILEFNYDPQ-----RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGV----PTHCSD 114 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~-----~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~----~~hC~~ 114 (124)
..+++.||++...+.+. .|++..=-.... +...+......|.+ .|+++ +|+|||-|.. ..|=.
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~- 135 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVV- 135 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhh-
Confidence 36789999999877653 466543110000 00011122334433 56666 8999999995 34767
Q ss_pred CCcEEEEEeC
Q 048131 115 HGMKLEINVE 124 (124)
Q Consensus 115 ~GmKl~I~V~ 124 (124)
.||...+.|+
T Consensus 136 ~Gl~G~liV~ 145 (311)
T TIGR02376 136 SGMNGAIMVL 145 (311)
T ss_pred cCcceEEEee
Confidence 8999988875
No 22
>PRK02888 nitrous-oxide reductase; Validated
Probab=86.18 E-value=1.8 Score=38.72 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=41.5
Q ss_pred CCeeeeCCEEEEEeCCC------CCeEEEECcCCCCCCCCCCCCcccccCC---cEEEeC-CcceEEEeCCCCCccC--C
Q 048131 48 GKTFKCGDILEFNYDPQ------RHNVIIVDQEGHDSCKPASDAKKFQTGK---DQIVLN-HGKNFFICGVPTHCSD--H 115 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~------~h~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~l~-~G~~yfic~~~~hC~~--~ 115 (124)
..+++.||.+.|..++- .|+... ..|. .......|. -+|+.+ ||.|+|+|+. .|-. .
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~ 624 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHM 624 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceee---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcc
Confidence 36789999999999852 355444 1221 111122232 256667 9999999997 4652 3
Q ss_pred CcEEEEEeC
Q 048131 116 GMKLEINVE 124 (124)
Q Consensus 116 GmKl~I~V~ 124 (124)
+|+..|.|+
T Consensus 625 ~M~G~~iVe 633 (635)
T PRK02888 625 EMRGRMLVE 633 (635)
T ss_pred cceEEEEEE
Confidence 688888875
No 23
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=84.41 E-value=0.41 Score=32.72 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=12.1
Q ss_pred CCcccchHHHHHHHHHHHHhhccccee
Q 048131 1 MAQARGSAIIAVVTVLLLLMHCNIGSA 27 (124)
Q Consensus 1 ma~~~~~~~~~~~~~~~~~~~~~~a~a 27 (124)
||.+. .++++|+|+++|+.++.++|
T Consensus 1 MaSK~--~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKA--FLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhH--HHHHHHHHHHHHHHHhhhhh
Confidence 66433 22355666655554444443
No 24
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=82.35 E-value=0.75 Score=32.06 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=44.1
Q ss_pred CCeeeeCCEEEEEeCCC---CCeEEE----ECcC-CCCC--CCCCCCCcccccCCcEEEeC--CcceEEEeCCCCCccCC
Q 048131 48 GKTFKCGDILEFNYDPQ---RHNVII----VDQE-GHDS--CKPASDAKKFQTGKDQIVLN--HGKNFFICGVPTHCSDH 115 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~---~h~V~~----V~~~-~y~~--C~~~~~~~~~~~G~~~v~l~--~G~~yfic~~~~hC~~~ 115 (124)
..+++.||+|..++.+. .+++.- ++.. ..|. -....++..-.+-.-.|+++ +|++||-|...++=. .
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~-~ 105 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQV-M 105 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHH-T
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhc-C
Confidence 36789999999998742 344422 1111 0110 01111222211112256665 599999999988666 8
Q ss_pred CcEEEEEeC
Q 048131 116 GMKLEINVE 124 (124)
Q Consensus 116 GmKl~I~V~ 124 (124)
||--.+.|+
T Consensus 106 GL~G~~iV~ 114 (117)
T PF07732_consen 106 GLYGAIIVE 114 (117)
T ss_dssp TEEEEEEEE
T ss_pred cCEEEEEEc
Confidence 999888875
No 25
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=81.38 E-value=6.5 Score=33.11 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=17.1
Q ss_pred cEEEeCCcceEEEeCCCCCccCCCcEEEEEe
Q 048131 93 DQIVLNHGKNFFICGVPTHCSDHGMKLEINV 123 (124)
Q Consensus 93 ~~v~l~~G~~yfic~~~~hC~~~GmKl~I~V 123 (124)
-+++|.||+|-|+|+. | . .||-.|+|
T Consensus 90 l~~~L~pGtY~~~C~~--~-~--~~~g~l~V 115 (375)
T PRK10378 90 MTANLQPGEYDMTCGL--L-T--NPKGKLIV 115 (375)
T ss_pred EEEecCCceEEeecCc--C-C--CCCceEEE
Confidence 3566669999999976 4 2 23555555
No 26
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=80.07 E-value=5.7 Score=30.03 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=48.8
Q ss_pred EEEecCCCCCCccccCC------CCCCeeeeCCEEEEEeCCC--CCeEEEECcCCCCCCCCCCCCc-ccccCCc---EEE
Q 048131 29 TFKVGDDGGWVFGVQNW------PEGKTFKCGDILEFNYDPQ--RHNVIIVDQEGHDSCKPASDAK-KFQTGKD---QIV 96 (124)
Q Consensus 29 ~~~VG~~~gW~~~~~~W------a~~~~f~vGD~L~F~y~~~--~h~V~~V~~~~y~~C~~~~~~~-~~~~G~~---~v~ 96 (124)
..++|-.=.|.+.|.+. .....+.+|+.+.|.-++. .|+...- ++ ..+ ..-.|.. .++
T Consensus 93 i~v~~~qw~W~f~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~DV~Hsf~ip---~~-------~~k~da~PG~~~~~~~~ 162 (201)
T TIGR02866 93 VKVEGHQWYWSFDYPESRRGFTTVNELVVPAGTPVRLQVTSKDVIHSFWVP---EL-------GGKIDAIPGQYNALWFN 162 (201)
T ss_pred EEEEEEEeEEEEEcCCcCCCccccCEEEEEcCCEEEEEEEeCchhhccccc---cc-------CceEEecCCcEEEEEEE
Confidence 44566566677777543 1223577889998887743 2443331 11 111 1112332 455
Q ss_pred eC-CcceEEEeCCCCCccC--CCcEEEEEeC
Q 048131 97 LN-HGKNFFICGVPTHCSD--HGMKLEINVE 124 (124)
Q Consensus 97 l~-~G~~yfic~~~~hC~~--~GmKl~I~V~ 124 (124)
.+ ||.|+..|++ .|-. +.|++.|.|+
T Consensus 163 ~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~ 191 (201)
T TIGR02866 163 ADEPGVYYGYCAE--LCGAGHSLMLFKVVVV 191 (201)
T ss_pred eCCCEEEEEEehh--hCCcCccCCeEEEEEE
Confidence 66 8999999997 4541 3499988873
No 27
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=78.31 E-value=4.2 Score=28.50 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=38.3
Q ss_pred CCeeeeCCEEEEEeCCC--CCeEEEECcCCCCCCCCCCCCcccccCC---cEEEeC-CcceEEEeCCCCCccCCC---cE
Q 048131 48 GKTFKCGDILEFNYDPQ--RHNVIIVDQEGHDSCKPASDAKKFQTGK---DQIVLN-HGKNFFICGVPTHCSDHG---MK 118 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~--~h~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~l~-~G~~yfic~~~~hC~~~G---mK 118 (124)
...+..|+.+.|.-++. .|+... .++. .....-.|. ..++.+ ||.|++.|+. -|- .| |+
T Consensus 47 ~l~lp~g~~v~~~ltS~DViHsf~i---p~~~------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG-~gH~~M~ 114 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDVIHSFWI---PELG------IKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCG-AGHSFMP 114 (120)
T ss_dssp EEEEETTSEEEEEEEESSS-EEEEE---TTCT------EEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSS-TTGGG-E
T ss_pred eecccccceEeEEEEcCCccccccc---cccC------cccccccccceeeeeeeccCCcEEEcCcc--ccC-cCcCCCe
Confidence 34568899999888753 577665 1111 001112243 256667 8999999997 677 55 88
Q ss_pred EEEEe
Q 048131 119 LEINV 123 (124)
Q Consensus 119 l~I~V 123 (124)
..|.|
T Consensus 115 ~~v~V 119 (120)
T PF00116_consen 115 GKVIV 119 (120)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88776
No 28
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=74.46 E-value=14 Score=23.77 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=24.7
Q ss_pred EEEEEeCCCCCeEEEE-CcCCCCCCCCCCCCcccccC-CcEEEeCCcceEE
Q 048131 56 ILEFNYDPQRHNVIIV-DQEGHDSCKPASDAKKFQTG-KDQIVLNHGKNFF 104 (124)
Q Consensus 56 ~L~F~y~~~~h~V~~V-~~~~y~~C~~~~~~~~~~~G-~~~v~l~~G~~yf 104 (124)
.++|+|..+..+|..+ +-..++. ..|...-.+| ..++.|.||.|.|
T Consensus 3 ~v~f~~~~~a~~V~v~G~F~~W~~---~~pm~~~~~~~~~~~~L~~g~y~Y 50 (79)
T cd02859 3 PTTFVWPGGGKEVYVTGSFDNWKK---KIPLEKSGKGFSATLRLPPGKYQY 50 (79)
T ss_pred EEEEEEcCCCcEEEEEEEcCCCCc---cccceECCCCcEEEEEcCCCCEEE
Confidence 3679998877888777 3333432 2333322333 2244445787543
No 29
>PLN02991 oxidoreductase
Probab=73.86 E-value=51 Score=29.03 Aligned_cols=76 Identities=11% Similarity=-0.007 Sum_probs=44.2
Q ss_pred CCeeeeCCEEEEEeCCC--------CCeEEEECcCCCCCCC-CCCCCcccccCCcEEEe-C-CcceEEEeCCCCCccCCC
Q 048131 48 GKTFKCGDILEFNYDPQ--------RHNVIIVDQEGHDSCK-PASDAKKFQTGKDQIVL-N-HGKNFFICGVPTHCSDHG 116 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~--------~h~V~~V~~~~y~~C~-~~~~~~~~~~G~~~v~l-~-~G~~yfic~~~~hC~~~G 116 (124)
..++..||+|+.+..+. -|.+.+......|.=. .--|+....+=.-.|++ + +|++||=+-...+-. .|
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~-~G 138 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKA-AG 138 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhh-CC
Confidence 36789999999888754 2555554222222200 01122222222236777 4 799999887766655 67
Q ss_pred cEEEEEeC
Q 048131 117 MKLEINVE 124 (124)
Q Consensus 117 mKl~I~V~ 124 (124)
+.-.+.|+
T Consensus 139 l~G~lIV~ 146 (543)
T PLN02991 139 GFGAIRIS 146 (543)
T ss_pred CeeeEEEe
Confidence 77777664
No 30
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=73.51 E-value=45 Score=28.66 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcccceeEEEEecCCCCCCccccCCCCCCeeeeCCE-EEEEeCCCCCeEE
Q 048131 11 AVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDI-LEFNYDPQRHNVI 69 (124)
Q Consensus 11 ~~~~~~~~~~~~~~a~a~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~-L~F~y~~~~h~V~ 69 (124)
++|++.|+.+.+..+....|+||+..|=..+.+.|... =-.||. +.|+|.....+++
T Consensus 11 l~l~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~--g~~~d~~~~f~~~~~~~~~~ 68 (421)
T PRK09723 11 LALCLSCYTASAGTDDNVSYIVGNYYGVGPSDQKWNET--GPSGDATVTFRYATSTNNLV 68 (421)
T ss_pred HHHHHhhhhhhccccCceEEEEccccccCCcccccccc--CCCcceEEEeccccCCcceE
Confidence 34554455555666778999999976654444555322 234553 3566654434443
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=70.96 E-value=10 Score=33.06 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCeeeeCCEEEEEeCCCC---------CeEEEECcCCCCC-CCCCCCCcccccCCc---EEEeC-CcceEEEeCCCCCcc
Q 048131 48 GKTFKCGDILEFNYDPQR---------HNVIIVDQEGHDS-CKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPTHCS 113 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~~---------h~V~~V~~~~y~~-C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~hC~ 113 (124)
..+++.||+|+++..+.. |.+.+......|. -..+ ......|.+ .|+++ +|++||-|-...|-.
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vt--q~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~ 110 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVT--QCAINPGETFIYNFVVDRPGTYFYHGHYGMQRS 110 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccc--cCCcCCCCEEEEEEEcCCCEEEEEEecchHHhh
Confidence 468899999999876531 2222211111111 0000 011223433 57777 899999999988888
Q ss_pred CCCcEEEEEeC
Q 048131 114 DHGMKLEINVE 124 (124)
Q Consensus 114 ~~GmKl~I~V~ 124 (124)
.||.-.|.|+
T Consensus 111 -~Gl~G~liV~ 120 (541)
T TIGR03388 111 -AGLYGSLIVD 120 (541)
T ss_pred -ccceEEEEEe
Confidence 9999998885
No 32
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=68.57 E-value=5.2 Score=28.00 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=11.9
Q ss_pred CeeeeCCEEEEEeC
Q 048131 49 KTFKCGDILEFNYD 62 (124)
Q Consensus 49 ~~f~vGD~L~F~y~ 62 (124)
++|++||.|+|+=-
T Consensus 30 ~~ikvGD~I~f~~~ 43 (109)
T cd06555 30 QQIKVGDKILFNDL 43 (109)
T ss_pred hcCCCCCEEEEEEc
Confidence 58999999999654
No 33
>PLN02835 oxidoreductase
Probab=68.55 E-value=69 Score=28.06 Aligned_cols=76 Identities=12% Similarity=-0.019 Sum_probs=45.7
Q ss_pred CCeeeeCCEEEEEeCCC--------CCeEEEECcCCCCCC-CCCCCCcccccCCcEEEe-C-CcceEEEeCCCCCccCCC
Q 048131 48 GKTFKCGDILEFNYDPQ--------RHNVIIVDQEGHDSC-KPASDAKKFQTGKDQIVL-N-HGKNFFICGVPTHCSDHG 116 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~--------~h~V~~V~~~~y~~C-~~~~~~~~~~~G~~~v~l-~-~G~~yfic~~~~hC~~~G 116 (124)
..+++.||+|+.+..+. -|.+.+-.....|.= ...-|+....+=.-.|++ + +|+|||=+-...+-. .|
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~-~G 139 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKA-AG 139 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhc-Cc
Confidence 46889999999888643 355555432222320 001122222221226766 4 799999998777777 88
Q ss_pred cEEEEEeC
Q 048131 117 MKLEINVE 124 (124)
Q Consensus 117 mKl~I~V~ 124 (124)
+.-.+.|+
T Consensus 140 l~G~lIV~ 147 (539)
T PLN02835 140 GFGAINVY 147 (539)
T ss_pred ccceeEEe
Confidence 88887773
No 34
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=62.37 E-value=9 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=15.2
Q ss_pred CeeeeCCEEEEEeCCCCC
Q 048131 49 KTFKCGDILEFNYDPQRH 66 (124)
Q Consensus 49 ~~f~vGD~L~F~y~~~~h 66 (124)
++|++||.+.|-+++..+
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 479999999999997544
No 35
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=60.38 E-value=5.4 Score=22.32 Aligned_cols=17 Identities=29% Similarity=0.864 Sum_probs=10.6
Q ss_pred cCCCCCCeeeeCCEEEE
Q 048131 43 QNWPEGKTFKCGDILEF 59 (124)
Q Consensus 43 ~~Wa~~~~f~vGD~L~F 59 (124)
..|.++++...||.+.|
T Consensus 2 p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 2 PAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp -B--TTCEE-TT-EEEE
T ss_pred CCcCCCCEEcCCCEEEE
Confidence 47889999999999975
No 36
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=58.36 E-value=35 Score=24.72 Aligned_cols=27 Identities=15% Similarity=0.421 Sum_probs=22.6
Q ss_pred EEEeCCcceEEEeCCCCCccCCCcEEEEEe
Q 048131 94 QIVLNHGKNFFICGVPTHCSDHGMKLEINV 123 (124)
Q Consensus 94 ~v~l~~G~~yfic~~~~hC~~~GmKl~I~V 123 (124)
++++.||..|-|.+ ..|. .|+++...+
T Consensus 100 ~~~~~pG~~y~i~~--f~Cp-~g~~v~ye~ 126 (143)
T PF09792_consen 100 TFTVSPGNSYVINT--FPCP-AGQAVSYEM 126 (143)
T ss_pred ceEECCCCceEeCc--EeCC-CCCEEEEEE
Confidence 57888999999986 5899 999887654
No 37
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=57.80 E-value=35 Score=30.33 Aligned_cols=83 Identities=18% Similarity=0.320 Sum_probs=52.2
Q ss_pred CCccccCCCC--CCeeeeCCEEEEEeCCC---CCeE------EEE-CcC-CCCCCCCCCCCcccccCC-c--EEEeC-Cc
Q 048131 38 WVFGVQNWPE--GKTFKCGDILEFNYDPQ---RHNV------IIV-DQE-GHDSCKPASDAKKFQTGK-D--QIVLN-HG 100 (124)
Q Consensus 38 W~~~~~~Wa~--~~~f~vGD~L~F~y~~~---~h~V------~~V-~~~-~y~~C~~~~~~~~~~~G~-~--~v~l~-~G 100 (124)
|+++=..|.. ..+++.||.+.+.+.+. .|.+ +++ +.. .|. ....+.....|. . .|..+ ||
T Consensus 488 wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~---~~~dTv~V~Pg~t~~~~f~ad~pG 564 (587)
T TIGR01480 488 WSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQ---VRKHTVDVPPGGKRSFRVTADALG 564 (587)
T ss_pred EEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCccc---ccCCceeeCCCCEEEEEEECCCCe
Confidence 8877555653 57899999999999753 2333 334 211 111 011111222233 2 45556 89
Q ss_pred ceEEEeCCCCCccCCCcEEEEEeC
Q 048131 101 KNFFICGVPTHCSDHGMKLEINVE 124 (124)
Q Consensus 101 ~~yfic~~~~hC~~~GmKl~I~V~ 124 (124)
+++|=|-...|=+ .||--.+.|+
T Consensus 565 ~w~~HCH~l~H~~-~GM~~~~~v~ 587 (587)
T TIGR01480 565 RWAYHCHMLLHME-AGMFREVTVR 587 (587)
T ss_pred EEEEcCCCHHHHh-CcCcEEEEeC
Confidence 9999999999999 9999888774
No 38
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=56.36 E-value=7.9 Score=25.27 Aligned_cols=13 Identities=38% Similarity=0.795 Sum_probs=10.8
Q ss_pred CCeeeeCCEEEEE
Q 048131 48 GKTFKCGDILEFN 60 (124)
Q Consensus 48 ~~~f~vGD~L~F~ 60 (124)
+..|+|||.|.++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 3689999999874
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=54.58 E-value=33 Score=30.55 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=45.2
Q ss_pred CeeeeCCEEEEEeCCC--------CCeEEEECcCCCC-----CCCCCCCCcccccCCcEEEeC--CcceEEEeCCCCCcc
Q 048131 49 KTFKCGDILEFNYDPQ--------RHNVIIVDQEGHD-----SCKPASDAKKFQTGKDQIVLN--HGKNFFICGVPTHCS 113 (124)
Q Consensus 49 ~~f~vGD~L~F~y~~~--------~h~V~~V~~~~y~-----~C~~~~~~~~~~~G~~~v~l~--~G~~yfic~~~~hC~ 113 (124)
.+++.||+|+.+..+. -|.+.|-...-.| .| |+..-.+=.-.|+++ +|++||=+....+-.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~ 137 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHRA 137 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhhh
Confidence 5789999999887543 3565554221122 23 222221112267774 799999998887777
Q ss_pred CCCcEEEEEeC
Q 048131 114 DHGMKLEINVE 124 (124)
Q Consensus 114 ~~GmKl~I~V~ 124 (124)
.|+.-.|.|+
T Consensus 138 -~Gl~GalII~ 147 (596)
T PLN00044 138 -AGGYGAITIN 147 (596)
T ss_pred -CcCeeEEEEc
Confidence 8999888875
No 40
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=52.57 E-value=42 Score=24.64 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=19.8
Q ss_pred CCeeeeCCEEEEEeCCC----CCeEEEECc
Q 048131 48 GKTFKCGDILEFNYDPQ----RHNVIIVDQ 73 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~----~h~V~~V~~ 73 (124)
...++.||.++|+.+.+ .|.|..+.+
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v~~ 87 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEINN 87 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEEEC
Confidence 35789999999998753 477777743
No 41
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=52.26 E-value=40 Score=29.97 Aligned_cols=75 Identities=9% Similarity=0.084 Sum_probs=42.1
Q ss_pred CCCeeeeCCEEEEEeCCCC--------CeEEEECcCCCCC-CCCC-CCCcccccCCcEEEeC-CcceEEEeCCCCCccCC
Q 048131 47 EGKTFKCGDILEFNYDPQR--------HNVIIVDQEGHDS-CKPA-SDAKKFQTGKDQIVLN-HGKNFFICGVPTHCSDH 115 (124)
Q Consensus 47 ~~~~f~vGD~L~F~y~~~~--------h~V~~V~~~~y~~-C~~~-~~~~~~~~G~~~v~l~-~G~~yfic~~~~hC~~~ 115 (124)
...+++.||.++.+..+.. |.+..-+ ..|. ...+ .++....+-.-.|++. +|+|||=|-...+=+ .
T Consensus 76 P~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~-~ 152 (587)
T TIGR01480 76 PLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPF--QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQ-A 152 (587)
T ss_pred ceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCc--cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhh-c
Confidence 3467899999999887531 2222111 1110 1111 1121111112256666 799999988776666 7
Q ss_pred CcEEEEEeC
Q 048131 116 GMKLEINVE 124 (124)
Q Consensus 116 GmKl~I~V~ 124 (124)
|+.-.|.|+
T Consensus 153 GL~G~lIV~ 161 (587)
T TIGR01480 153 GLYGPLIID 161 (587)
T ss_pred cceEEEEEC
Confidence 888877774
No 42
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=51.82 E-value=62 Score=22.07 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=35.2
Q ss_pred CCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEe--CCcceEEEe
Q 048131 46 PEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVL--NHGKNFFIC 106 (124)
Q Consensus 46 a~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l--~~G~~yfic 106 (124)
+....++++|..+.+-.++..-+.+|+...|. .....+..... +...+++ .+|..||+-
T Consensus 40 ~~~~~v~vdg~~ig~l~~g~y~~~~v~pG~h~-i~~~~~~~~~~-~~~~l~~~~~~G~~yy~r 100 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNGGYFYVEVPPGKHT-ISAKSEFSSSP-GANSLDVTVEAGKTYYVR 100 (117)
T ss_pred cccceEEECCEEEEEeCCCeEEEEEECCCcEE-EEEecCccCCC-CccEEEEEEcCCCEEEEE
Confidence 45678899999988877777777777655543 22222211111 3344444 488777763
No 43
>PLN02191 L-ascorbate oxidase
Probab=51.64 E-value=37 Score=29.92 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=44.7
Q ss_pred CCeeeeCCEEEEEeCCC---------CCeEEEECcCCCCC-CCCCCCCcccccCCc---EEEeC-CcceEEEeCCCCCcc
Q 048131 48 GKTFKCGDILEFNYDPQ---------RHNVIIVDQEGHDS-CKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPTHCS 113 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~---------~h~V~~V~~~~y~~-C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~hC~ 113 (124)
..+++.||+|+.+..+. -|.+.+-...-+|. -..+ ......|.+ .|+++ +|++||=|-...+-.
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt--q~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~ 132 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT--QCAINPGETFTYKFTVEKPGTHFYHGHYGMQRS 132 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc--cCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHh
Confidence 35789999999887643 13333321111221 0000 011223333 56677 899999999888888
Q ss_pred CCCcEEEEEeC
Q 048131 114 DHGMKLEINVE 124 (124)
Q Consensus 114 ~~GmKl~I~V~ 124 (124)
.||.-.|.|+
T Consensus 133 -~Gl~G~liV~ 142 (574)
T PLN02191 133 -AGLYGSLIVD 142 (574)
T ss_pred -CCCEEEEEEc
Confidence 9999888874
No 44
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=48.64 E-value=17 Score=28.82 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=21.5
Q ss_pred EEEeC-CcceEEEeCCCCCccC--CCcEEEEEeC
Q 048131 94 QIVLN-HGKNFFICGVPTHCSD--HGMKLEINVE 124 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~--~GmKl~I~V~ 124 (124)
.++.+ ||.|+.+|+. .|-. +.|++.|.|+
T Consensus 180 ~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~vv 211 (247)
T COG1622 180 WLTANKPGTYRGICAE--YCGPGHSFMRFKVIVV 211 (247)
T ss_pred EEecCCCeEEEEEcHh--hcCCCcccceEEEEEE
Confidence 45556 8999999986 5661 3499999874
No 45
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=47.51 E-value=62 Score=23.66 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=28.0
Q ss_pred CeeeeCCEEEEEeC-----CCCCeEEEECcCCCCCCCCCCC
Q 048131 49 KTFKCGDILEFNYD-----PQRHNVIIVDQEGHDSCKPASD 84 (124)
Q Consensus 49 ~~f~vGD~L~F~y~-----~~~h~V~~V~~~~y~~C~~~~~ 84 (124)
...+.||.+++.-. ..-|..+.++....-.|+....
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~~ 114 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGAN 114 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCCC
Confidence 57899999998665 2359999998888888987543
No 46
>COG3241 Azurin [Energy production and conversion]
Probab=47.42 E-value=19 Score=26.27 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=19.2
Q ss_pred CcEEEeC-----Cc-ceEEEeCCCCCccCCCcEEEEE
Q 048131 92 KDQIVLN-----HG-KNFFICGVPTHCSDHGMKLEIN 122 (124)
Q Consensus 92 ~~~v~l~-----~G-~~yfic~~~~hC~~~GmKl~I~ 122 (124)
.++++++ .| .|-|+|++|||=. =||-.++
T Consensus 114 ~~S~Tfd~~kL~~g~~Y~FfCtFPGH~A--LMkGtlt 148 (151)
T COG3241 114 ETSLTFDPAKLADGVEYKFFCTFPGHGA--LMKGTLT 148 (151)
T ss_pred cceEecCHHHhcCCceEEEEEecCCcHH--hhcceee
Confidence 4578775 37 4559999999954 3554443
No 47
>PLN02168 copper ion binding / pectinesterase
Probab=47.31 E-value=2e+02 Score=25.34 Aligned_cols=76 Identities=9% Similarity=0.023 Sum_probs=45.7
Q ss_pred CCeeeeCCEEEEEeCCC--------CCeEEEECcCCCCC-CCCCCCCcccccCCcEEEe-C-CcceEEEeCCCCCccCCC
Q 048131 48 GKTFKCGDILEFNYDPQ--------RHNVIIVDQEGHDS-CKPASDAKKFQTGKDQIVL-N-HGKNFFICGVPTHCSDHG 116 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~--------~h~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~l-~-~G~~yfic~~~~hC~~~G 116 (124)
..+++.||+|+.+..++ -|.+.+-.....|. -...-|+....+=.-.|++ + +|++||=+-...+=. .|
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~-~G 136 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKA-AG 136 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhh-Cc
Confidence 46899999999988743 26665543322232 0101123222222236777 4 799999887666555 78
Q ss_pred cEEEEEeC
Q 048131 117 MKLEINVE 124 (124)
Q Consensus 117 mKl~I~V~ 124 (124)
+.-.+.|+
T Consensus 137 L~G~lII~ 144 (545)
T PLN02168 137 GYGAIRIY 144 (545)
T ss_pred ceeEEEEc
Confidence 88888775
No 48
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=44.74 E-value=21 Score=25.93 Aligned_cols=31 Identities=32% Similarity=0.669 Sum_probs=21.8
Q ss_pred EEEecCCCCCCccccCCC-CCCeeeeCCEEEEE
Q 048131 29 TFKVGDDGGWVFGVQNWP-EGKTFKCGDILEFN 60 (124)
Q Consensus 29 ~~~VG~~~gW~~~~~~Wa-~~~~f~vGD~L~F~ 60 (124)
..+|||+.| +++.+-|- .+..|++||.|.++
T Consensus 40 ~~kVaD~Tg-sI~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 40 SCKVADETG-SINISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEEecccc-eEEEEEecCcCcccCCccEEEec
Confidence 457999876 34445553 34789999999775
No 49
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=43.73 E-value=27 Score=22.56 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=11.6
Q ss_pred CCCCeeeeCCEEEEEeCCC
Q 048131 46 PEGKTFKCGDILEFNYDPQ 64 (124)
Q Consensus 46 a~~~~f~vGD~L~F~y~~~ 64 (124)
+..+.+++||.++|.+...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 3456789999999999853
No 50
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.30 E-value=16 Score=30.59 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=19.0
Q ss_pred eeeCCEEEEEeCCCCCeEEE--E---CcCCCCCCCCC
Q 048131 51 FKCGDILEFNYDPQRHNVII--V---DQEGHDSCKPA 82 (124)
Q Consensus 51 f~vGD~L~F~y~~~~h~V~~--V---~~~~y~~C~~~ 82 (124)
.+.||+|+|.|+. |.--+ . +..+||.|-.+
T Consensus 135 aq~gD~LvfHYSG--HGtr~~~~~gDe~dG~DE~I~P 169 (362)
T KOG1546|consen 135 AQPGDSLVFHYSG--HGTRQPDTNGDEVDGYDETIVP 169 (362)
T ss_pred CCCCCEEEEEecC--CCCcCCCCCCCCCCCCcceeec
Confidence 5799999999984 22211 2 23468876543
No 51
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.27 E-value=35 Score=25.98 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEeC-CcceEEEeCCCCCccC--CCcEEEEEe
Q 048131 94 QIVLN-HGKNFFICGVPTHCSD--HGMKLEINV 123 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~--~GmKl~I~V 123 (124)
.++.+ ||.|+..|++ -|-. +.|++.|.|
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v 189 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEV 189 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEE
Confidence 34456 8999999996 6762 349988876
No 52
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=39.30 E-value=95 Score=27.01 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=42.3
Q ss_pred CCeeeeCCEEEEEeCCC--------CCeEEEECcCCCCC--CCCCCCCcccccCCcEEEe-C-CcceEEEeCCCCCccCC
Q 048131 48 GKTFKCGDILEFNYDPQ--------RHNVIIVDQEGHDS--CKPASDAKKFQTGKDQIVL-N-HGKNFFICGVPTHCSDH 115 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~--------~h~V~~V~~~~y~~--C~~~~~~~~~~~G~~~v~l-~-~G~~yfic~~~~hC~~~ 115 (124)
..++..||+|+.+..+. -|.+.+......|. .-.--|+....+-.-.|++ + +|++||=|-.. +.. .
T Consensus 35 ~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~-~~~-~ 112 (539)
T TIGR03389 35 TLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHIS-WLR-A 112 (539)
T ss_pred EEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCch-hhh-c
Confidence 36889999999888643 24444432111221 0000122221111226776 3 69999999875 455 6
Q ss_pred CcEEEEEeC
Q 048131 116 GMKLEINVE 124 (124)
Q Consensus 116 GmKl~I~V~ 124 (124)
||.-.|.|+
T Consensus 113 Gl~G~lIV~ 121 (539)
T TIGR03389 113 TVYGAIVIL 121 (539)
T ss_pred cceEEEEEc
Confidence 888888775
No 53
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=36.32 E-value=48 Score=21.28 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=13.4
Q ss_pred eeeeCCEEEEEeCCCC
Q 048131 50 TFKCGDILEFNYDPQR 65 (124)
Q Consensus 50 ~f~vGD~L~F~y~~~~ 65 (124)
++++||.|.|.+..+.
T Consensus 2 ~~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNR 17 (83)
T ss_pred cccCCCEEEEEEEeCC
Confidence 6889999999998654
No 54
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.06 E-value=16 Score=25.57 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=13.1
Q ss_pred CCCeeeeCCEEEEEeC
Q 048131 47 EGKTFKCGDILEFNYD 62 (124)
Q Consensus 47 ~~~~f~vGD~L~F~y~ 62 (124)
+.+..++||+|+|+=.
T Consensus 30 krr~ik~GD~IiF~~~ 45 (111)
T COG4043 30 KRRQIKPGDKIIFNGD 45 (111)
T ss_pred hhcCCCCCCEEEEcCC
Confidence 4578999999999853
No 55
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=35.84 E-value=24 Score=22.34 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=14.7
Q ss_pred cCCCCCCeeeeCCEEEEEeCCC
Q 048131 43 QNWPEGKTFKCGDILEFNYDPQ 64 (124)
Q Consensus 43 ~~Wa~~~~f~vGD~L~F~y~~~ 64 (124)
.+-+.-..+++||.|.|.+...
T Consensus 35 ~~~~~l~~l~~Gd~V~F~~~~~ 56 (70)
T PF11604_consen 35 ADPVDLAGLKPGDKVRFTFERT 56 (70)
T ss_dssp -TTSEESS-STT-EEEEEEEEE
T ss_pred CChhhhhcCCCCCEEEEEEEEC
Confidence 4445557899999999999853
No 56
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.61 E-value=56 Score=25.27 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEeC-CcceEEEeCCCCCccCCC---cEEEEEe
Q 048131 94 QIVLN-HGKNFFICGVPTHCSDHG---MKLEINV 123 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~~G---mKl~I~V 123 (124)
.++.+ ||.|+..|+. -|- .| |++.|.|
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG-~~H~~M~~~v~v 213 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICG-ANHSFMPIVVEA 213 (228)
T ss_pred EEEeCCCEEEEEECcc--ccC-cCcCCCeEEEEE
Confidence 34556 8999999996 676 54 8888876
No 57
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=31.22 E-value=32 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.3
Q ss_pred cCCCCCCeeeeCCEEEEEeCC
Q 048131 43 QNWPEGKTFKCGDILEFNYDP 63 (124)
Q Consensus 43 ~~Wa~~~~f~vGD~L~F~y~~ 63 (124)
..|++...+++||.|.|..-+
T Consensus 103 ~G~~~~~~i~vGd~v~~~~~~ 123 (126)
T COG1430 103 AGWAARLGIKVGDRVEFRPLG 123 (126)
T ss_pred CCchhhcCCccCCEEEecccC
Confidence 589999999999999998754
No 58
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=30.25 E-value=95 Score=16.61 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=19.2
Q ss_pred EEEeC-CcceEEEeCCCCCccCCCcE
Q 048131 94 QIVLN-HGKNFFICGVPTHCSDHGMK 118 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~~GmK 118 (124)
...++ .|.-||-.++...|. .|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P-~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNP-EGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCC-CCCC
Confidence 45566 699999999999998 8864
No 59
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=29.85 E-value=94 Score=27.73 Aligned_cols=64 Identities=11% Similarity=0.180 Sum_probs=43.6
Q ss_pred cCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCC----CCccc-ccCCc-EEEeC-CcceEEEe
Q 048131 43 QNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPAS----DAKKF-QTGKD-QIVLN-HGKNFFIC 106 (124)
Q Consensus 43 ~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~----~~~~~-~~G~~-~v~l~-~G~~yfic 106 (124)
.+=.++|+|..=|.+.|+|+...-.++.+...+.|.-+.+- .+..+ .+|.+ +|+|. .|+-|=++
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 44456799999999999999877888888777777655542 11111 12544 77787 78776443
No 60
>PLN02792 oxidoreductase
Probab=29.73 E-value=1.6e+02 Score=25.87 Aligned_cols=75 Identities=11% Similarity=0.066 Sum_probs=42.3
Q ss_pred CCeeeeCCEEEEEeCCC--------CCeEEEECcCCCCCC-CCCCCCcccccCCcEEEe-C-CcceEEEeCCCCCccCCC
Q 048131 48 GKTFKCGDILEFNYDPQ--------RHNVIIVDQEGHDSC-KPASDAKKFQTGKDQIVL-N-HGKNFFICGVPTHCSDHG 116 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~--------~h~V~~V~~~~y~~C-~~~~~~~~~~~G~~~v~l-~-~G~~yfic~~~~hC~~~G 116 (124)
..+++.||+|+.+..+. -|.+.+-.....|.= ...-|+....+=.-.|++ + +|++||=+-...+-. .|
T Consensus 48 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~-~G 126 (536)
T PLN02792 48 EIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKA-AG 126 (536)
T ss_pred cEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhh-cc
Confidence 36789999999888643 356665422112210 000122222211226777 4 799999998776655 66
Q ss_pred cEEEEEe
Q 048131 117 MKLEINV 123 (124)
Q Consensus 117 mKl~I~V 123 (124)
+.-.+.|
T Consensus 127 l~G~liI 133 (536)
T PLN02792 127 GYGSLRI 133 (536)
T ss_pred cccceEE
Confidence 6655543
No 61
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=29.06 E-value=59 Score=21.20 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=27.1
Q ss_pred eEEEEecCC---CCCCcc-------------ccCCCCCCeeeeCCEEEEEeC
Q 048131 27 ATTFKVGDD---GGWVFG-------------VQNWPEGKTFKCGDILEFNYD 62 (124)
Q Consensus 27 a~~~~VG~~---~gW~~~-------------~~~Wa~~~~f~vGD~L~F~y~ 62 (124)
...+++|+. ..|++. +..|.....+..|..+.|+|-
T Consensus 16 e~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~ 67 (96)
T PF00686_consen 16 ESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYV 67 (96)
T ss_dssp EEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEE
T ss_pred CEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEE
Confidence 357889984 359851 257888788888999999985
No 62
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=29.02 E-value=52 Score=20.73 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=23.8
Q ss_pred EEEEecCCCCCCccccCCCCC--CeeeeCCEEEEE
Q 048131 28 TTFKVGDDGGWVFGVQNWPEG--KTFKCGDILEFN 60 (124)
Q Consensus 28 ~~~~VG~~~gW~~~~~~Wa~~--~~f~vGD~L~F~ 60 (124)
....++|+.| .+...-|... ..++.||.+.+.
T Consensus 25 ~~~~l~D~TG-~i~~~~W~~~~~~~~~~G~vv~i~ 58 (82)
T cd04491 25 QSGLVGDETG-TIRFTLWDEKAADDLEPGDVVRIE 58 (82)
T ss_pred EEEEEECCCC-EEEEEEECchhcccCCCCCEEEEE
Confidence 3556888888 6666777654 678899988877
No 63
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=26.58 E-value=75 Score=21.99 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=16.0
Q ss_pred CCCeeeeCCEEEEEeCCCC
Q 048131 47 EGKTFKCGDILEFNYDPQR 65 (124)
Q Consensus 47 ~~~~f~vGD~L~F~y~~~~ 65 (124)
+++.+++||.|.+.|....
T Consensus 45 pS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 45 PSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred cccccCCCCEEEEEeCCcE
Confidence 4589999999999998643
No 64
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=26.41 E-value=58 Score=19.81 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.1
Q ss_pred CCeeeeCCEEEEEeCC
Q 048131 48 GKTFKCGDILEFNYDP 63 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~ 63 (124)
++.|..||.|.|.+..
T Consensus 16 ~~pv~~Gd~i~~~~~~ 31 (64)
T PF02933_consen 16 GRPVTKGDTIVFPFFG 31 (64)
T ss_dssp TEEEETT-EEEEEETT
T ss_pred CCCccCCCEEEEEeCC
Confidence 5789999999999974
No 65
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=26.32 E-value=47 Score=26.41 Aligned_cols=21 Identities=33% Similarity=0.918 Sum_probs=18.4
Q ss_pred cEEEeC-CcceEEEeCCCCCcc
Q 048131 93 DQIVLN-HGKNFFICGVPTHCS 113 (124)
Q Consensus 93 ~~v~l~-~G~~yfic~~~~hC~ 113 (124)
+.+.++ .|.+-|+|+...||+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~ 278 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCE 278 (291)
T ss_pred eeeEEcCCCceEEEecCchHHH
Confidence 367777 899999999999998
No 66
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=26.26 E-value=89 Score=23.42 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEeC-CcceEEEeCCCCCccC--CCcEEEEEe
Q 048131 95 IVLN-HGKNFFICGVPTHCSD--HGMKLEINV 123 (124)
Q Consensus 95 v~l~-~G~~yfic~~~~hC~~--~GmKl~I~V 123 (124)
+..+ ||.+|..|+. -|-. +.|++.|.|
T Consensus 117 ~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~v 146 (162)
T PTZ00047 117 TFILREGVFYGQCSE--MCGTLHGFMPIVVEA 146 (162)
T ss_pred EecCCCeEEEEEcch--hcCcCccCceEEEEE
Confidence 3445 8999999986 5651 348888776
No 67
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=26.12 E-value=54 Score=19.47 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=12.8
Q ss_pred CCCCeeeeCCEEEEEeC
Q 048131 46 PEGKTFKCGDILEFNYD 62 (124)
Q Consensus 46 a~~~~f~vGD~L~F~y~ 62 (124)
++..+..+||.|.|.-.
T Consensus 3 ~d~~~~~~Gd~v~Yti~ 19 (53)
T TIGR01451 3 VDKTVATIGDTITYTIT 19 (53)
T ss_pred cCccccCCCCEEEEEEE
Confidence 34568899999987754
No 68
>TIGR01653 lactococcin_972 bacteriocin, lactococcin 972 family. This model represents bacteriocins related to lactococcin 972. Members tend to be found in association with a seven transmembrane putative immunity protein.
Probab=25.88 E-value=72 Score=21.70 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=9.6
Q ss_pred CCCCeEEEEC-cCCCCCCCC
Q 048131 63 PQRHNVIIVD-QEGHDSCKP 81 (124)
Q Consensus 63 ~~~h~V~~V~-~~~y~~C~~ 81 (124)
...|.--.+. ...+..|+.
T Consensus 53 ~k~H~StV~g~~~~~s~~~~ 72 (92)
T TIGR01653 53 KRNHWATVVNDKSGRRGKDV 72 (92)
T ss_pred CCcceeEEeeccccCccccc
Confidence 4467666653 344444543
No 69
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=24.83 E-value=39 Score=20.11 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=9.7
Q ss_pred hcccceeEEEEecCCCC
Q 048131 21 HCNIGSATTFKVGDDGG 37 (124)
Q Consensus 21 ~~~~a~a~~~~VG~~~g 37 (124)
++.++++..|.-=|++|
T Consensus 7 ~~~a~aa~vYk~~D~~G 23 (60)
T PF13511_consen 7 AASAAAAEVYKWVDENG 23 (60)
T ss_pred hHHHhhccEEEEECCCC
Confidence 33445578887545445
No 70
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=24.82 E-value=50 Score=20.51 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=18.0
Q ss_pred ccCCCCCCeeeeCCEEEEEeC
Q 048131 42 VQNWPEGKTFKCGDILEFNYD 62 (124)
Q Consensus 42 ~~~Wa~~~~f~vGD~L~F~y~ 62 (124)
..+++...++++||.|+|...
T Consensus 28 ~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 28 ITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEecCCCcccCCCEEEEEEE
Confidence 468888899999999998875
No 71
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.60 E-value=1.1e+02 Score=23.62 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEeC-CcceEEEeCCCCCccC--CCcEEEEEe
Q 048131 94 QIVLN-HGKNFFICGVPTHCSD--HGMKLEINV 123 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~--~GmKl~I~V 123 (124)
.++.+ ||.||-.|++ -|-. +.|++.|.|
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~v 213 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVES 213 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEE
Confidence 44556 8999999996 5661 238888876
No 72
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=24.54 E-value=88 Score=20.51 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=12.2
Q ss_pred CeeeeCCEEEEEeCCCCCeEEEE
Q 048131 49 KTFKCGDILEFNYDPQRHNVIIV 71 (124)
Q Consensus 49 ~~f~vGD~L~F~y~~~~h~V~~V 71 (124)
.++++||+|.|..+. ...+.++
T Consensus 41 ~~L~pGq~l~f~~d~-~g~L~~L 62 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDE-DGQLTAL 62 (85)
T ss_dssp GG--TT-EEEEEE-T-TS-EEEE
T ss_pred hhCCCCCEEEEEECC-CCCEEEE
Confidence 368999999999985 3445444
No 73
>PLN02311 chalcone isomerase
Probab=24.13 E-value=1e+02 Score=24.84 Aligned_cols=26 Identities=4% Similarity=0.267 Sum_probs=19.7
Q ss_pred CCeeeeCCEEEEEeCCCCCeEEEECc
Q 048131 48 GKTFKCGDILEFNYDPQRHNVIIVDQ 73 (124)
Q Consensus 48 ~~~f~vGD~L~F~y~~~~h~V~~V~~ 73 (124)
++.|..||++.|.|.++...++.+++
T Consensus 199 ~~~l~kGd~I~~~~~p~~~~~v~~s~ 224 (271)
T PLN02311 199 NRSLNKGTVIFLTWINPSKMLVCISS 224 (271)
T ss_pred CCCCCCCCEEEEEEeCCCceEEEEec
Confidence 46899999999999986555555553
No 74
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.10 E-value=1.1e+02 Score=23.72 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEeC-CcceEEEeCCCCCccCCC---cEEEEEe
Q 048131 94 QIVLN-HGKNFFICGVPTHCSDHG---MKLEINV 123 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~~G---mKl~I~V 123 (124)
.++.+ ||.||..|+. -|- .| |++.|.|
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG-~~H~~M~~~v~v 213 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICG-ANHSFMPIVIES 213 (227)
T ss_pred EEEEcCceEEEEEeec--hhC-cCccCCeEEEEE
Confidence 45556 8999999986 566 44 8888765
No 75
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.62 E-value=93 Score=24.20 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=19.7
Q ss_pred EEEeC-CcceEEEeCCCCCccC--CCcEEEEEe
Q 048131 94 QIVLN-HGKNFFICGVPTHCSD--HGMKLEINV 123 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~--~GmKl~I~V 123 (124)
.+..+ ||.||..|+. -|-. +.|++.|.|
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~v 213 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEA 213 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEE
Confidence 34456 8999999986 5651 348888775
No 76
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=23.43 E-value=45 Score=20.62 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=13.8
Q ss_pred CCCCccc-----cCCCCCCeeeeCCEEEEE
Q 048131 36 GGWVFGV-----QNWPEGKTFKCGDILEFN 60 (124)
Q Consensus 36 ~gW~~~~-----~~Wa~~~~f~vGD~L~F~ 60 (124)
.+|.+.. +.=+....++.||+|+|+
T Consensus 39 ~~W~~~vNG~~~~~ga~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 39 SYWMYYVNGESANVGAGSYKLKDGDKITWY 68 (68)
T ss_dssp EEEEEEETTEE-SS-CCC-B--TTEEEEE-
T ss_pred ceeEEEECCEEhhcCcceeEeCCCCEEEeC
Confidence 4676532 344566789999999985
No 77
>PRK10883 FtsI repressor; Provisional
Probab=23.40 E-value=1.9e+02 Score=24.77 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=39.2
Q ss_pred CCCeeeeCCEEEEEeCCC--------CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC--CcceEEEeCCCC---
Q 048131 47 EGKTFKCGDILEFNYDPQ--------RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN--HGKNFFICGVPT--- 110 (124)
Q Consensus 47 ~~~~f~vGD~L~F~y~~~--------~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~--~G~~yfic~~~~--- 110 (124)
...+++.||+|..++.+. -|.+.+-+. ..+. ...+ ...|.+ .|+.+ +|++||=+-..+
T Consensus 77 Ptir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g--~~~~---I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~ 150 (471)
T PRK10883 77 PTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGG--PARM---MSPNADWAPVLPIRQNAATCWYHANTPNRMA 150 (471)
T ss_pred CeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCC--cccc---CCCCCeEEEEEecCCCceeeEEccCCCCchh
Confidence 446889999999999653 244432221 1111 1112 223332 34444 599999665432
Q ss_pred -CccCCCcEEEEEeC
Q 048131 111 -HCSDHGMKLEINVE 124 (124)
Q Consensus 111 -hC~~~GmKl~I~V~ 124 (124)
+-. .||.-.+.|+
T Consensus 151 ~qv~-~GL~G~lII~ 164 (471)
T PRK10883 151 QHVY-NGLAGMWLVE 164 (471)
T ss_pred hhHh-cCCeEEEEEe
Confidence 445 6887777664
No 78
>PRK03760 hypothetical protein; Provisional
Probab=22.99 E-value=41 Score=23.54 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=16.2
Q ss_pred cCCCCCCeeeeCCEEEEEe
Q 048131 43 QNWPEGKTFKCGDILEFNY 61 (124)
Q Consensus 43 ~~Wa~~~~f~vGD~L~F~y 61 (124)
..|++...+++||.|.|..
T Consensus 98 aG~~~~~gi~~Gd~v~~~~ 116 (117)
T PRK03760 98 VGKIRVLKVEVGDEIEWID 116 (117)
T ss_pred CChHHHcCCCCCCEEEEee
Confidence 4788888999999998874
No 79
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.97 E-value=1.1e+02 Score=23.75 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEeC-CcceEEEeCCCCCccCCC---cEEEEEe
Q 048131 94 QIVLN-HGKNFFICGVPTHCSDHG---MKLEINV 123 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~~G---mKl~I~V 123 (124)
.++.+ ||.+|..|++ -|- .| |++.|.|
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG-~~Hs~M~~~v~v 213 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICG-ANHSFMPIVVEF 213 (225)
T ss_pred EEEcCCCEEEEEEccc--ccC-cCcCCCeEEEEE
Confidence 34456 8999999986 566 44 8888776
No 80
>PF15240 Pro-rich: Proline-rich
Probab=22.78 E-value=47 Score=25.32 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=4.7
Q ss_pred HHHHHHHhhccc
Q 048131 13 VTVLLLLMHCNI 24 (124)
Q Consensus 13 ~~~~~~~~~~~~ 24 (124)
||-+.||.|+++
T Consensus 5 LLSvALLALSSA 16 (179)
T PF15240_consen 5 LLSVALLALSSA 16 (179)
T ss_pred HHHHHHHHhhhc
Confidence 333334444433
No 81
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=22.73 E-value=50 Score=25.91 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=22.8
Q ss_pred CeeeeCCEEEEEeCCCCCeEEEE-CcCCCCCCCCC
Q 048131 49 KTFKCGDILEFNYDPQRHNVIIV-DQEGHDSCKPA 82 (124)
Q Consensus 49 ~~f~vGD~L~F~y~~~~h~V~~V-~~~~y~~C~~~ 82 (124)
..-++||.++|+|-. ...++.. |++.|+.-..+
T Consensus 78 ~~pk~GD~vil~~~Y-~rallIAPn~e~Y~~i~~~ 111 (218)
T PF15436_consen 78 MVPKKGDEVILNYLY-NRALLIAPNQETYEKIKSS 111 (218)
T ss_pred cccCCCCEEEEeecc-cceEEEcCCHHHHHHHHHh
Confidence 467899999999984 2334444 78878765444
No 82
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.61 E-value=27 Score=26.36 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=17.3
Q ss_pred eeeeCCEEEEEeCC----CCCeEEEE
Q 048131 50 TFKCGDILEFNYDP----QRHNVIIV 71 (124)
Q Consensus 50 ~f~vGD~L~F~y~~----~~h~V~~V 71 (124)
.+++||.++|+.+. =.|.|+.+
T Consensus 77 p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 77 PIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred cceeccEEEEEECCccCchhHHHHHH
Confidence 48999999999983 25777665
No 83
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.51 E-value=1e+02 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEeC-CcceEEEeCCCCCccCCC---cEEEEEe
Q 048131 94 QIVLN-HGKNFFICGVPTHCSDHG---MKLEINV 123 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~~G---mKl~I~V 123 (124)
.++.+ ||.||..|++ -|- .| |++.|.|
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG-~~Hs~M~~~v~v 213 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICG-ANHSFMPIVVEA 213 (226)
T ss_pred EEEcCCCEEEEEEChh--hcC-cCcCCCeEEEEE
Confidence 44556 8999999986 566 43 8888776
No 84
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=22.41 E-value=70 Score=17.62 Aligned_cols=17 Identities=24% Similarity=0.929 Sum_probs=13.0
Q ss_pred cCCCCCCeeeeCCEEEE
Q 048131 43 QNWPEGKTFKCGDILEF 59 (124)
Q Consensus 43 ~~Wa~~~~f~vGD~L~F 59 (124)
..|.+++.-..||.+.+
T Consensus 2 ~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 2 PAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CccCCCCcCcCCCEEEE
Confidence 46888877778998865
No 85
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=21.76 E-value=54 Score=23.24 Aligned_cols=21 Identities=19% Similarity=-0.069 Sum_probs=14.9
Q ss_pred eeeeCCEEEEEeCCCCCeEEEE
Q 048131 50 TFKCGDILEFNYDPQRHNVIIV 71 (124)
Q Consensus 50 ~f~vGD~L~F~y~~~~h~V~~V 71 (124)
.-++||.++|++.. ...|-.+
T Consensus 73 ~p~~GDiv~f~~~~-~~HVGi~ 93 (129)
T TIGR02594 73 KPAYGCIAVKRRGG-GGHVGFV 93 (129)
T ss_pred CCCccEEEEEECCC-CCEEEEE
Confidence 45899999998875 3345444
No 86
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=21.72 E-value=64 Score=18.44 Aligned_cols=19 Identities=16% Similarity=0.705 Sum_probs=11.9
Q ss_pred cCCcEEEeC-CcceEEEeCC
Q 048131 90 TGKDQIVLN-HGKNFFICGV 108 (124)
Q Consensus 90 ~G~~~v~l~-~G~~yfic~~ 108 (124)
.+...+... .|..|++|+.
T Consensus 11 ~~~~~~~~~y~G~~Y~FCS~ 30 (47)
T PF04945_consen 11 PGNAAYSVEYNGRTYYFCSE 30 (47)
T ss_dssp -----EEEEETTEEEEESSH
T ss_pred ccCccEEEEECCEEEEEcCH
Confidence 455677777 8999999984
No 87
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.10 E-value=73 Score=23.38 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHHHHhhcccceeEEEEecCCCCCC
Q 048131 12 VVTVLLLLMHCNIGSATTFKVGDDGGWV 39 (124)
Q Consensus 12 ~~~~~~~~~~~~~a~a~~~~VG~~~gW~ 39 (124)
.+.|+.+++++..+.|..+. |+..||-
T Consensus 11 ~~ala~~~~~s~~a~A~~~~-G~~~G~~ 37 (143)
T PRK11546 11 LMALSALAMGSGSAFAHHHW-GGGHGMW 37 (143)
T ss_pred HHHHHHHHHhhhHHHHhhcc-CCCCCCC
Confidence 34444555666666666666 7767765
No 88
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=21.02 E-value=82 Score=21.98 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=15.8
Q ss_pred cCCCCCCeeeeCCEEEEEeCC
Q 048131 43 QNWPEGKTFKCGDILEFNYDP 63 (124)
Q Consensus 43 ~~Wa~~~~f~vGD~L~F~y~~ 63 (124)
.+=+.=..++-||.+.|.+..
T Consensus 76 kd~a~lsglKeGdkV~fvfer 96 (108)
T COG5569 76 KDQAKLSGLKEGDKVEFVFER 96 (108)
T ss_pred ccHHHhhccccCCcEEEEEEe
Confidence 344445568899999999984
No 89
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.86 E-value=1.3e+02 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=19.8
Q ss_pred EEEeC-CcceEEEeCCCCCccCCC---cEEEEEe
Q 048131 94 QIVLN-HGKNFFICGVPTHCSDHG---MKLEINV 123 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~~G---mKl~I~V 123 (124)
.++.+ ||.+|..|+. -|- .| |++.|.|
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG-~~Hs~M~~~v~v 213 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICG-ANHSFMPIVIES 213 (229)
T ss_pred EEEcCCCEEEEEEccc--ccC-cCcCCCeEEEEE
Confidence 34456 8999999986 566 44 8888775
No 90
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=20.80 E-value=60 Score=25.87 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=41.9
Q ss_pred CEEEEEeCCCCCeEEEECcCCCCCCCCCCCC-cccccCCcEEEeCCcceEEEeCCCCCccCCCcEEEE
Q 048131 55 DILEFNYDPQRHNVIIVDQEGHDSCKPASDA-KKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEI 121 (124)
Q Consensus 55 D~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~-~~~~~G~~~v~l~~G~~yfic~~~~hC~~~GmKl~I 121 (124)
|+.+-.|+++...|+. +|++...-... ....+-+..+..-.-..|..|..+|.|. .|....|
T Consensus 56 d~~vl~y~~~l~GivL----gydnIKvLg~~aki~~D~pf~hlwi~adfyVf~Pk~Gd~L-eG~Vn~v 118 (253)
T KOG4134|consen 56 DTKVLFYDSGLDGIVL----GYDNIKVLGQTAKIRADDPFMHLWINADFYVFRPKAGDIL-EGVVNHV 118 (253)
T ss_pred hHHHhhhccCCCceEE----eecceEeeccccceecCCCceEEEEeeeEEEECCCCCCee-eeeeeec
Confidence 6677888888888887 88877665433 2333333333322567889999999999 8876554
No 91
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=20.55 E-value=1.7e+02 Score=20.78 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=15.8
Q ss_pred CeeeeCCEEEEEeCCCCCeEEEE
Q 048131 49 KTFKCGDILEFNYDPQRHNVIIV 71 (124)
Q Consensus 49 ~~f~vGD~L~F~y~~~~h~V~~V 71 (124)
.++++||.|......+.--.++|
T Consensus 71 ~~l~~GD~I~v~~~~g~~~~Y~V 93 (144)
T cd05829 71 GDLRKGDKVEVTRADGQTATFRV 93 (144)
T ss_pred hcCCCCCEEEEEECCCCEEEEEE
Confidence 36789999999995444334444
No 92
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=20.46 E-value=3.6e+02 Score=19.82 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=14.8
Q ss_pred CCEEEEEeC----CCCCeE-EEE-CcCCCCCCC
Q 048131 54 GDILEFNYD----PQRHNV-IIV-DQEGHDSCK 80 (124)
Q Consensus 54 GD~L~F~y~----~~~h~V-~~V-~~~~y~~C~ 80 (124)
.|+|.|+++ .+.+++ +.+ +-.+|.-.|
T Consensus 41 ~d~l~F~~~~~d~~~~y~l~l~lR~n~~Ypy~n 73 (156)
T TIGR03511 41 SDTLDFEIPITDYTASYRLFLLIRNDNRYPYRN 73 (156)
T ss_pred CCcEEEEEeecCCCCcEEEEEEEEcCCCCcccC
Confidence 466677765 235556 334 556665444
No 93
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=20.36 E-value=1.1e+02 Score=19.02 Aligned_cols=12 Identities=58% Similarity=0.935 Sum_probs=9.7
Q ss_pred CeeeeCCEEEEE
Q 048131 49 KTFKCGDILEFN 60 (124)
Q Consensus 49 ~~f~vGD~L~F~ 60 (124)
+...+||++.|+
T Consensus 2 ~~a~vGdiIefk 13 (57)
T PF09953_consen 2 KKAKVGDIIEFK 13 (57)
T ss_pred cccccCcEEEEc
Confidence 346799999996
No 94
>PF11442 DUF2826: Protein of unknown function (DUF2826); InterPro: IPR021547 This is a family of uncharacterised proteins that is highly conserved in Trypanosoma cruzi.
Probab=20.34 E-value=88 Score=22.86 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=16.9
Q ss_pred hhcccceeEEEEecCCCCCCcc
Q 048131 20 MHCNIGSATTFKVGDDGGWVFG 41 (124)
Q Consensus 20 ~~~~~a~a~~~~VG~~~gW~~~ 41 (124)
+++-+++-.+|-.-.+.||-..
T Consensus 16 llp~vashadyclsadhgw~as 37 (161)
T PF11442_consen 16 LLPFVASHADYCLSADHGWHAS 37 (161)
T ss_pred HHHHHhhccceeeccCcccccc
Confidence 4555677789998889999754
No 95
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=20.21 E-value=1.2e+02 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=21.0
Q ss_pred EEEeC-CcceEEEeCCCCCccC--CCcEEEEEeC
Q 048131 94 QIVLN-HGKNFFICGVPTHCSD--HGMKLEINVE 124 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~--~GmKl~I~V~ 124 (124)
.++.+ ||.|+-.|++ -|-. +.|++.|.|+
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~ 213 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIAT 213 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEE
Confidence 45566 8999999986 5661 3498888763
No 96
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=20.20 E-value=1.3e+02 Score=23.33 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEeC-CcceEEEeCCCCCccCCC---cEEEEEe
Q 048131 94 QIVLN-HGKNFFICGVPTHCSDHG---MKLEINV 123 (124)
Q Consensus 94 ~v~l~-~G~~yfic~~~~hC~~~G---mKl~I~V 123 (124)
.++.+ ||.+|..|+. -|- .| |.+.|.|
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG-~~H~~M~~~v~v 213 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICG-SNHSFMPIVLEL 213 (227)
T ss_pred EEecCCcEEEEEECcc--ccC-cCcCCceEEEEE
Confidence 34456 8999999986 565 43 8877765
No 97
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=20.02 E-value=43 Score=22.30 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=16.3
Q ss_pred CeeeeCCEEEEEeCC-----CCCeEEEE-CcCCCC
Q 048131 49 KTFKCGDILEFNYDP-----QRHNVIIV-DQEGHD 77 (124)
Q Consensus 49 ~~f~vGD~L~F~y~~-----~~h~V~~V-~~~~y~ 77 (124)
.-+.+||.+.|.-+. +...|.-| ++..|.
T Consensus 26 HGl~vGD~VnFsnsa~tGvSG~mTVatVid~ntFT 60 (83)
T PF12195_consen 26 HGLFVGDFVNFSNSAVTGVSGNMTVATVIDANTFT 60 (83)
T ss_dssp ----TT-EEEEES-SSTT--EEEEEEEEEETTEEE
T ss_pred CceeecceEEEeccccccccccEEEEEEecCCcEE
Confidence 447899999999874 35667666 665553
Done!