BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048133
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 388
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDL 70
WD+++ I ++ R+ + GL + LY + Y+ + H + +LY ++ +
Sbjct: 12 WDLLKNAIQEIQRKNNSGLS--------FEELYRNAYTMVL----HKHGEKLYTGLREVV 59
Query: 71 EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISE 130
E++ + V + + + L+ L + + +H+ + + Y++R Y++Q + +
Sbjct: 60 TEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYN 119
Query: 131 IGLTCFRDLV 140
+GL FRD V
Sbjct: 120 LGLIIFRDQV 129
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
Length = 410
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDL 70
WD+++ I ++ R+ + GL + LY + Y+ + H + +LY ++ +
Sbjct: 34 WDLLKNAIQEIQRKNNSGLS--------FEELYRNAYTMVL----HKHGEKLYTGLREVV 81
Query: 71 EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISE 130
E++ + V + + + L+ L + + +H+ + + Y++R Y++Q + +
Sbjct: 82 TEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYN 141
Query: 131 IGLTCFRDLV 140
+GL FRD V
Sbjct: 142 LGLIIFRDQV 151
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|D Chain D, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 364
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 12 WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDL 70
WD+++ I ++ R+ + GL + LY + Y+ + H + +LY ++ +
Sbjct: 17 WDLLKNAIQEIQRKNNSGLS--------FEELYRNAYTXVL----HKHGEKLYTGLREVV 64
Query: 71 EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISE 130
E++ + V + + + L+ L + + +H+ + Y +R Y++Q + +
Sbjct: 65 TEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAXVXIRDILXYXDRVYVQQNNVENVYN 124
Query: 131 IGLTCFRDLV 140
+GL FRD V
Sbjct: 125 LGLIIFRDQV 134
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 42 LYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHL-LRELVKRFAN 100
LY +V + C H S LY + +Q E+++ + + P + D L L+++ + +
Sbjct: 86 LYQAVENLC----SHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 141
Query: 101 HKVMVKWLALCFNYLERYYIRQRA-LPTISEIGLTCFR 137
H + + F +L+R Y+ Q + LP+I ++GL FR
Sbjct: 142 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFR 179
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 42 LYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHL-LRELVKRFAN 100
LY +V + C H S LY + +Q E+++ + + P + D L L+++ + +
Sbjct: 69 LYQAVENLC----SHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 124
Query: 101 HKVMVKWLALCFNYLERYYIRQRA-LPTISEIGLTCFR 137
H + + F +L+R Y+ Q + LP+I ++GL FR
Sbjct: 125 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFR 162
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 9 DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQ 68
DE W +++ + ++ + +N+++ LY +V + C + SA LY + +Q
Sbjct: 11 DETWQKLKEAVEAIQNSTS----IKYNLEE---LYQAVENLC----SYKISANLYKQLRQ 59
Query: 69 DLEEYMSSTVFPSLSEKHDEHLLRELVKR-FANHKVMVKWLALCFNYLERYYIRQRA-LP 126
E+++ + + + D L + + R + NH + + F +L+R Y+ Q + LP
Sbjct: 60 ICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLP 119
Query: 127 TISEIGLTCFRDLVFDALKHKAKDV 151
+I ++GL FR + K + K +
Sbjct: 120 SIWDMGLELFRAHIISDQKVQNKTI 144
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 9 DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQ 68
DE W +++ + ++ + +N+++ LY +V + C + SA LY + +Q
Sbjct: 27 DETWQKLKEAVEAIQNSTS----IKYNLEE---LYQAVENLC----SYKISANLYKQLRQ 75
Query: 69 DLEEYMSSTVFPSLSEKHDEHLLRELVKR-FANHKVMVKWLALCFNYLERYYIRQRA-LP 126
E+++ + + + D L + + R + NH + + F +L+R Y+ Q + LP
Sbjct: 76 ICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLP 135
Query: 127 TISEIGLTCFR 137
+I ++GL FR
Sbjct: 136 SIWDMGLELFR 146
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 9 DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQ 68
DE W +++ + ++ + +N+++ LY +V + C + SA LY + +Q
Sbjct: 42 DETWQKLKEAVEAIQNSTS----IKYNLEE---LYQAVENLC----SYKISANLYKQLRQ 90
Query: 69 DLEEYMSSTVFPSLSEKHDEHLLRELVKR-FANHKVMVKWLALCFNYLERYYIRQRA-LP 126
E+++ + + + D L + + R + NH + + F +L+R Y+ Q + LP
Sbjct: 91 ICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLP 150
Query: 127 TISEIGLTCFR 137
+I ++GL FR
Sbjct: 151 SIWDMGLELFR 161
>pdb|2UUL|C Chain C, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 162
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 47 YSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVF---PSLSEKHDEHLLRELVKRFANHKV 103
Y+TC+QGP++ + +KC +D+ Y+ + + DE+L+ + + ++
Sbjct: 65 YTTCMQGPNYAADQRGKDKCARDIGYYLRMVTYCLIAGGTGPMDEYLIAGIDEVNRTFEL 124
Query: 104 MVKWLALCFNYLE 116
W Y++
Sbjct: 125 SPSWYIEALKYIK 137
>pdb|2UUL|A Chain A, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|E Chain E, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|G Chain G, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|I Chain I, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|K Chain K, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|M Chain M, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|O Chain O, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|Q Chain Q, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|S Chain S, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|U Chain U, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|W Chain W, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 162
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 47 YSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVF---PSLSEKHDEHLLRELVKRFANHKV 103
Y+TC+QGP++ + +KC +D+ Y+ + + DE+L+ + + ++
Sbjct: 65 YTTCMQGPNYAADQRGKDKCARDIGYYLRMVTYCLIAGGTGPMDEYLIAGIDEVNRTFEL 124
Query: 104 MVKWLALCFNYLE 116
W Y++
Sbjct: 125 SPSWYIEALKYIK 137
>pdb|2UUN|A Chain A, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|C Chain C, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|E Chain E, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|G Chain G, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|I Chain I, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|K Chain K, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|M Chain M, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|O Chain O, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|Q Chain Q, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|S Chain S, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|U Chain U, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|W Chain W, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 162
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 47 YSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVF---PSLSEKHDEHLLRELVKRFANHKV 103
Y+TC+QGP++ + +KC +D+ Y+ + + DE+L+ + + ++
Sbjct: 65 YTTCMQGPNYAADQRGKDKCARDIGYYLRMVTYCLIAGGTGPMDEYLIAGIDEVNRTFEL 124
Query: 104 MVKWLALCFNYLE 116
W Y++
Sbjct: 125 SPSWYIEALKYIK 137
>pdb|1YF2|A Chain A, Three-dimensional Structure Of Dna Sequence Specificity
(s) Subunit Of A Type I Restriction-modification Enzyme
And Its Functional Implications
pdb|1YF2|B Chain B, Three-dimensional Structure Of Dna Sequence Specificity
(s) Subunit Of A Type I Restriction-modification Enzyme
And Its Functional Implications
Length = 425
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 8 MDEGWDIIQKWITKLRRISEGL 29
+DEG +II+K I KL RI +GL
Sbjct: 181 IDEGIEIIEKSINKLERIKKGL 202
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 19 ITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHH 56
I K RI G P+ PF + D V L ++ + + GP
Sbjct: 218 IDKTWRIGTGAPKGPFEIFDIVGLTTAYNISSVSGPKQ 255
>pdb|1YPX|A Chain A, Crystal Structure Of The Putative Vitamin-B12 Independent
Methionine Synthase From Listeria Monocytogenes,
Northeast Structural Genomics Target Lmr13
Length = 375
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 105 VKWLALCFNYLERYYIRQRAL--PTISEIGLTCFRDLVFDALKHKAKDVVIT 154
W LC + +R +RQR T+ E +++L+ +A+KHK D VIT
Sbjct: 189 TSWSYLCSDE-QREVVRQRGFDPETLQE----TYKNLINEAIKHKPADXVIT 235
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 71 EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYI 120
+E+ + TV P HD L V H ++V+ LA+ NY ++ +
Sbjct: 29 QEWSTETVAP-----HDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVL 73
>pdb|3UJ2|A Chain A, Crystal Structure Of An Enolase From Anaerostipes Caccae
(Efi Target Efi-502054) With Bound Mg And Sulfate
pdb|3UJ2|B Chain B, Crystal Structure Of An Enolase From Anaerostipes Caccae
(Efi Target Efi-502054) With Bound Mg And Sulfate
pdb|3UJ2|C Chain C, Crystal Structure Of An Enolase From Anaerostipes Caccae
(Efi Target Efi-502054) With Bound Mg And Sulfate
pdb|3UJ2|D Chain D, Crystal Structure Of An Enolase From Anaerostipes Caccae
(Efi Target Efi-502054) With Bound Mg And Sulfate
pdb|3UJ2|E Chain E, Crystal Structure Of An Enolase From Anaerostipes Caccae
(Efi Target Efi-502054) With Bound Mg And Sulfate
pdb|3UJ2|F Chain F, Crystal Structure Of An Enolase From Anaerostipes Caccae
(Efi Target Efi-502054) With Bound Mg And Sulfate
pdb|3UJ2|G Chain G, Crystal Structure Of An Enolase From Anaerostipes Caccae
(Efi Target Efi-502054) With Bound Mg And Sulfate
pdb|3UJ2|H Chain H, Crystal Structure Of An Enolase From Anaerostipes Caccae
(Efi Target Efi-502054) With Bound Mg And Sulfate
Length = 449
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 83 SEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYI 120
EK E++L + ++FA+ +++ W +LC ERY I
Sbjct: 274 GEKKGEYILPKCKRKFASEELVAHWKSLC----ERYPI 307
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D+ + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADEPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
++ V NHK W+A+ +E +I + P
Sbjct: 285 KDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
++ V NHK W+A+ +E +I + P
Sbjct: 285 KDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
++ V NHK W+A+ +E +I + P
Sbjct: 285 KDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
++ V NHK W+A+ +E +I + P
Sbjct: 285 KDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 222 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 270
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
++ V NHK W+A+ +E +I + P
Sbjct: 271 KDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 307
>pdb|2BV8|A Chain A, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|C Chain C, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|E Chain E, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|K Chain K, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|M Chain M, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|O Chain O, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis
Length = 162
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 47 YSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVF---PSLSEKHDEHLLRELVKRFANHKV 103
Y+T +QGP++ A KC +D+ Y+ + + DE+L+ L + + ++
Sbjct: 65 YTTQMQGPNYAADATGKAKCARDIGYYLRMVTYCLVVGATGPMDEYLIAGLSEINRSFEL 124
Query: 104 MVKWLALCFNYLE 116
W Y++
Sbjct: 125 SPSWYIEALEYIK 137
>pdb|2IND|B Chain B, Mn(Ii) Reconstituted TolueneO-Xylene Monooxygenase
Hydroxylase X-Ray Crystal Structure
Length = 323
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 30 PEPPFNVDDYVMLYSSVYSTCIQGP--HHGYSA---------QLYNKCKQDLEEYMSSTV 78
PE P+ +D + + + C P H ++A + YN + E Y+ +
Sbjct: 35 PERPWELDSNLPMQTWYKKYCFDSPLKHDDWNAFRDPDQLVYRTYNLLQDGQESYVQG-L 93
Query: 79 FPSLSEK-HDEHLLRELVKRFANHKVMVKWL 108
F L+++ HD+ L RE V+ A ++L
Sbjct: 94 FDQLNDRGHDQMLTREWVETLARFYTPARYL 124
>pdb|2INC|B Chain B, Native TolueneO-Xylene Monooxygenase Hydroxylase X-Ray
Crystal Structure
Length = 322
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 30 PEPPFNVDDYVMLYSSVYSTCIQGP--HHGYSA---------QLYNKCKQDLEEYMSSTV 78
PE P+ +D + + + C P H ++A + YN + E Y+ +
Sbjct: 35 PERPWELDSNLPMQTWYKKYCFDSPLKHDDWNAFRDPDQLVYRTYNLLQDGQESYVQG-L 93
Query: 79 FPSLSEK-HDEHLLRELVKRFANHKVMVKWL 108
F L+++ HD+ L RE V+ A ++L
Sbjct: 94 FDQLNDRGHDQMLTREWVETLARFYTPARYL 124
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 257 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 305
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 306 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 342
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 257 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 305
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 306 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 342
>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
Length = 350
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 231 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 279
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 280 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 316
>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
pdb|1J3H|B Chain B, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
Length = 350
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 237 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 285
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 286 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 322
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 237 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 285
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 286 KNGVNDIXNHKWFATTDWIAIYQRKVEAPFIPKFKGP 322
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 237 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 285
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 286 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 322
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 257 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 305
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 306 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 342
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 237 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 285
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 286 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 322
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 237 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 285
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 286 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 322
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1T0Q|B Chain B, Structure Of The Toluene/o-xylene Monooxygenase
Hydroxylase
pdb|1T0R|B Chain B, Crystal Structure Of The TolueneO-Xylene Monooxygenase
Hydroxuylase From Pseudomonas Stutzeri-Azide Bound
pdb|1T0S|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
With 4- Bromophenol Bound
pdb|2RDB|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase I100w Mutant
pdb|3N1X|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201c Mutant
pdb|3N1Y|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201g Mutant
pdb|3N1Z|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201s Mutant
pdb|3N20|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201v Mutant
pdb|3RN9|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sL272E DOUBLE MUTANT
pdb|3RNA|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100W DOUBLE MUTANT
pdb|3RNB|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sF176W DOUBLE MUTANT
pdb|3RNC|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100A DOUBLE MUTANT
pdb|3RNE|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI276E DOUBLE MUTANT
pdb|3RNF|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sV271A DOUBLE MUTANT
pdb|3RNG|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sW167E DOUBLE MUTANT
Length = 330
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 30 PEPPFNVDDYVMLYSSVYSTCIQGP--HHGYSA---------QLYNKCKQDLEEYMSSTV 78
PE P+ +D + + + C P H ++A + YN + E Y+ +
Sbjct: 42 PERPWELDSNLPMQTWYKKYCFDSPLKHDDWNAFRDPDQLVYRTYNLLQDGQESYVQG-L 100
Query: 79 FPSLSEK-HDEHLLRELVKRFANHKVMVKWL 108
F L+++ HD+ L RE V+ A ++L
Sbjct: 101 FDQLNDRGHDQMLTREWVETLARFYTPARYL 131
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 237 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 285
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 286 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 322
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 237 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 285
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 286 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 322
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 237 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 285
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 286 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 322
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 236 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 284
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 285 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 321
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 32 PPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91
PPF D + +Y + S ++ P H S DL++ + + + L+++ L
Sbjct: 237 PPFFADQPIQIYEKIVSGKVRFPSHFSS---------DLKDLLRNLLQVDLTKRFGN--L 285
Query: 92 RELVKRFANHK--VMVKWLALCFNYLERYYIRQRALP 126
+ V NHK W+A+ +E +I + P
Sbjct: 286 KNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,124,684
Number of Sequences: 62578
Number of extensions: 191816
Number of successful extensions: 538
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 73
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)