Query 048133
Match_columns 172
No_of_seqs 120 out of 735
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2166 Cullins [Cell cycle co 99.9 6.9E-25 1.5E-29 188.3 13.0 172 1-172 3-177 (725)
2 PF00888 Cullin: Cullin family 99.9 4.5E-24 9.9E-29 182.1 12.6 137 12-171 1-137 (588)
3 KOG2284 E3 ubiquitin ligase, C 99.9 1.2E-21 2.6E-26 156.4 13.4 157 2-166 5-179 (728)
4 COG5647 Cullin, a subunit of E 99.9 2.9E-21 6.4E-26 162.1 16.3 162 4-170 16-194 (773)
5 KOG2285 E3 ubiquitin ligase, C 99.6 9.4E-15 2E-19 118.3 10.9 158 4-170 9-175 (777)
6 KOG2167 Cullins [Cell cycle co 99.4 4.2E-13 9.1E-18 111.4 8.2 110 62-171 2-118 (661)
7 PF08539 HbrB: HbrB-like; Int 98.4 1.1E-05 2.3E-10 58.1 12.5 134 5-149 2-156 (158)
8 KOG2167 Cullins [Cell cycle co 73.5 23 0.0005 31.0 7.8 149 9-169 111-268 (661)
9 PF11864 DUF3384: Domain of un 65.5 32 0.00069 29.1 7.2 34 104-138 430-463 (464)
10 KOG1086 Cytosolic sorting prot 62.4 77 0.0017 26.9 8.4 109 8-120 22-143 (594)
11 PF07516 SecA_SW: SecA Wing an 60.5 69 0.0015 24.0 8.7 64 88-154 148-211 (214)
12 PF14164 YqzH: YqzH-like prote 57.0 39 0.00084 20.5 4.5 40 31-74 23-62 (64)
13 PRK14064 exodeoxyribonuclease 56.1 47 0.001 20.7 6.9 37 1-44 1-37 (75)
14 PF10163 EnY2: Transcription f 48.8 68 0.0015 20.4 5.4 39 9-53 29-68 (86)
15 PRK13107 preprotein translocas 41.7 2.9E+02 0.0062 25.9 9.4 64 88-154 765-828 (908)
16 cd05024 S-100A10 S-100A10: A s 39.0 1.1E+02 0.0024 19.9 5.1 33 17-52 48-80 (91)
17 PF08511 COQ9: COQ9; InterPro 37.9 30 0.00066 21.8 2.1 22 3-24 52-73 (79)
18 PRK12904 preprotein translocas 35.8 3.6E+02 0.0079 25.0 9.2 64 88-154 745-808 (830)
19 PRK13104 secA preprotein trans 35.4 3.8E+02 0.0083 25.1 9.4 65 88-155 761-825 (896)
20 PRK12900 secA preprotein trans 34.2 4.2E+02 0.0091 25.2 9.3 64 88-154 877-940 (1025)
21 PRK13103 secA preprotein trans 33.1 4.2E+02 0.0091 24.9 9.4 64 88-154 765-828 (913)
22 PHA00425 DNA packaging protein 32.6 1.3E+02 0.0029 19.1 4.4 43 58-104 31-73 (88)
23 CHL00122 secA preprotein trans 31.0 4.5E+02 0.0097 24.6 8.9 63 88-153 803-865 (870)
24 PLN02999 photosystem II oxygen 30.6 2.3E+02 0.0049 21.0 8.5 62 42-115 126-189 (190)
25 PF08328 ASL_C: Adenylosuccina 29.9 17 0.00037 24.7 -0.1 37 6-53 46-82 (115)
26 PRK12906 secA preprotein trans 29.7 4.6E+02 0.0099 24.3 9.3 64 88-154 726-789 (796)
27 KOG4100 Uncharacterized conser 28.2 2E+02 0.0043 19.6 5.5 56 40-107 13-69 (125)
28 PF11123 DNA_Packaging_2: DNA 27.4 1.6E+02 0.0036 18.4 4.1 43 58-104 29-71 (82)
29 PF08563 P53_TAD: P53 transact 27.0 27 0.00059 16.9 0.4 13 4-16 11-23 (25)
30 PRK12902 secA preprotein trans 26.2 5.6E+02 0.012 24.2 9.0 63 88-153 863-925 (939)
31 PRK14067 exodeoxyribonuclease 24.7 1.9E+02 0.0041 18.2 7.8 42 1-49 2-43 (80)
32 PF13940 Ldr_toxin: Toxin Ldr, 23.0 1.3E+02 0.0028 15.7 4.7 31 127-157 2-32 (35)
33 PRK12903 secA preprotein trans 22.9 6.5E+02 0.014 23.7 9.3 65 88-155 714-778 (925)
34 smart00685 DM14 Repeats in fly 22.2 1.2E+02 0.0026 18.0 2.7 25 145-169 30-54 (59)
35 PRK09200 preprotein translocas 21.8 6.5E+02 0.014 23.3 9.5 63 88-153 711-773 (790)
36 PF08066 PMC2NT: PMC2NT (NUC01 21.3 1.3E+02 0.0028 19.3 2.9 21 5-25 60-80 (91)
37 PF13202 EF-hand_5: EF hand; P 21.2 1.1E+02 0.0024 14.3 2.0 21 21-41 3-23 (25)
38 PF08776 VASP_tetra: VASP tetr 20.0 1.7E+02 0.0037 15.9 4.4 14 132-145 4-17 (40)
No 1
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=6.9e-25 Score=188.35 Aligned_cols=172 Identities=51% Similarity=0.921 Sum_probs=151.1
Q ss_pred CCCCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccc
Q 048133 1 MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFP 80 (172)
Q Consensus 1 ~~~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~ 80 (172)
|++.+++++..|+.+++++..+....++-+.+.++..+++.+|+++|++|+++++.+.+++||+++++++.+|+.+.+.+
T Consensus 3 ~~~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~ 82 (725)
T KOG2166|consen 3 MAPKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLP 82 (725)
T ss_pred ccccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999887643334588899999999999999999665555999999999999999998766
Q ss_pred ccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccc-CCccHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHH
Q 048133 81 SLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR-ALPTISEIG-LTCFRDLVFD-ALKHKAKDVVITLID 157 (172)
Q Consensus 81 ~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~-~~~~i~~l~-l~~f~~~v~~-~~~~~l~~~il~~I~ 157 (172)
.+..+.++.+|+.++..|.+|+.++.+++++|+||||+|+.+. +..++++++ +.+|+..+.. ++++++.++++.+|.
T Consensus 83 ~~~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~all~lI~ 162 (725)
T KOG2166|consen 83 ALREKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDALLALIH 162 (725)
T ss_pred HHHhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHHHHHHH
Confidence 6666677889999999999999999999999999999999976 666666666 8888877777 699999999999999
Q ss_pred HHhCCCccchhhhcC
Q 048133 158 REREGEEIDRALLKN 172 (172)
Q Consensus 158 ~eR~g~~id~~lik~ 172 (172)
.+|.|+.||+.+|++
T Consensus 163 ~eR~ge~in~~~i~~ 177 (725)
T KOG2166|consen 163 KEREGEQIDRELIRN 177 (725)
T ss_pred hhcccccccHHHHhh
Confidence 999999999999874
No 2
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....
Probab=99.91 E-value=4.5e-24 Score=182.13 Aligned_cols=137 Identities=38% Similarity=0.712 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccccccccchHHH
Q 048133 12 WDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL 91 (172)
Q Consensus 12 W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~~~~~~~lL 91 (172)
|+.|++||+.|+. ..++..+||.+|+.||++|..+ +|+.||+.+++.+..|+.+++ +.+.+.+++++|
T Consensus 1 W~~l~~~i~~i~~-------~~~~~~~~~~lY~~vy~l~~~~----~~~~LY~~l~~~i~~~~~~~~-~~l~~~~~~~~l 68 (588)
T PF00888_consen 1 WEILEEAIDQIFK-------KSISKLSYMELYTCVYNLCDNK----YGEQLYDKLKEFISEYLKNII-ESLLSSSDEDLL 68 (588)
T ss_dssp HHHHHHHHHHHHT-------T-GCCSHHHHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHH-HHHCTTTTCHHH
T ss_pred ChHHHHHHHHHHc-------CCCChhHHHHHHHHHHhhcCCc----ccHHHHHHHHHHHHHHHHHHH-HHHHhcChhHHH
Confidence 9999999999983 3577889999999999999987 899999999999999999975 666666778999
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhc
Q 048133 92 RELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLK 171 (172)
Q Consensus 92 ~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~~I~~eR~g~~id~~lik 171 (172)
..|...|.+|+.++++++++|+||||+|+.++ +|++.|+.++++++..+++++|.++|.|+.+|+.+|+
T Consensus 69 ~~~~~~w~~~~~~~~~i~~if~yLdr~yv~~~-----------~f~~~v~~~~~~~i~~~ll~~I~~~R~g~~~~~~~l~ 137 (588)
T PF00888_consen 69 EEYVQEWEKYKKAIKYISDIFSYLDRNYVKRN-----------LFREQVFKPLKDKIINALLNLIKNEREGEKIDRSLLK 137 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHTSTTTT-----------HHHHHTTTSHHHHHHHHHHHHHHHHHTTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999999999999999999876 9999999999999999999999999999999988876
No 3
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=156.40 Aligned_cols=157 Identities=19% Similarity=0.362 Sum_probs=137.9
Q ss_pred CCCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccc
Q 048133 2 GHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPS 81 (172)
Q Consensus 2 ~~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~ 81 (172)
.|+..+|++.|..|.+.|..|... .++.+..|..-|+.||.+|.+-| .+.||.||+..+.++++|++..++..
T Consensus 5 kp~vv~fd~~w~~l~~si~~ii~l------~~i~~~~w~~~fsdvy~icvs~p-~pl~erly~e~k~~i~~hvrq~~~~~ 77 (728)
T KOG2284|consen 5 KPKVVEFDKVWVQLRPSIIDIINL------RPITNVQWHHKFSDVYDICVSIP-TPLSERLYNEVKACIQEHVRQKRQDI 77 (728)
T ss_pred CceeeeHHHHHHHHHHHHHHHHhc------cchhccccccchhhHHHHHHhCC-CchhHHHHHHHHHHHHHHHHHHhhhh
Confidence 688999999999999999998763 47788899999999999999864 46999999999999999999765443
Q ss_pred cccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC------------------CccHHHHHHHHHHHHHHHH
Q 048133 82 LSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA------------------LPTISEIGLTCFRDLVFDA 143 (172)
Q Consensus 82 l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~------------------~~~i~~l~l~~f~~~v~~~ 143 (172)
... +.+.+|..|.+.|+.|..+..++..+|.|||..|++++. ...|..+|+++|++.+..+
T Consensus 78 v~~-~p~~~l~~yh~~w~~~~~ga~~~~~l~~yln~qfvk~~~~t~~d~~~~y~~~~~~~~~~eig~lal~~w~~~~v~~ 156 (728)
T KOG2284|consen 78 VDV-DPDLLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDNFAQYAAFLQIPDVKEIGCLALEIWKEDLVKT 156 (728)
T ss_pred hcC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhcccchhhhhhhcchhcCCcHHHHhHHHHHHHHHHHHHH
Confidence 333 335699999999999999999999999999999999862 3457888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCccc
Q 048133 144 LKHKAKDVVITLIDREREGEEID 166 (172)
Q Consensus 144 ~~~~l~~~il~~I~~eR~g~~id 166 (172)
+...|+.-++..|..+|.|+..+
T Consensus 157 i~~~lv~~ll~~i~ndr~g~~p~ 179 (728)
T KOG2284|consen 157 ILPQLVKLLLIAIDNDRKGNFPH 179 (728)
T ss_pred HHHHHHHHHHHHhhcccCCCCcc
Confidence 99999999999999999998654
No 4
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.9e-21 Score=162.11 Aligned_cols=162 Identities=18% Similarity=0.302 Sum_probs=141.0
Q ss_pred CcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCC------------CchHHHHHHHHHHHH
Q 048133 4 KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHH------------GYSAQLYNKCKQDLE 71 (172)
Q Consensus 4 ~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~------------~~~~~LY~~l~~~i~ 71 (172)
+..||++.|..++.||++|+..+.+ .+...++|++|+.+|+.|+...++ ..++.+|++++...+
T Consensus 16 ~~~df~~~W~~i~~~I~~I~~~l~~----~m~~l~~~evY~~IYn~c~n~tr~~~~~~~~~~~~~~~~s~li~~L~~~~k 91 (773)
T COG5647 16 SEEDFESTWEFIERAIGQIFERLYD----SMAILSLMEVYTKIYNYCTNKTRSLESDLRWKIDFIYLGSRLIQKLVDYAK 91 (773)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHhcccccchhcccchhHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999999977643 456678999999999999998763 158899999999999
Q ss_pred HHHhhccccccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhc-----ccCCccHHHHHHHHHHHHHHHHHHH
Q 048133 72 EYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIR-----QRALPTISEIGLTCFRDLVFDALKH 146 (172)
Q Consensus 72 ~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~-----~~~~~~i~~l~l~~f~~~v~~~~~~ 146 (172)
+++.+.-. .......+++|..+++.|++|+.++.+++.+|.||||.|++ +.+...++.+++..|+..+|.++.+
T Consensus 92 ~~i~~~~~-~~s~~~~~~fl~~~v~~W~~~~~~~~~i~~~f~Ymdr~~~k~~~~~~~~~~E~~slcl~~~~~~~f~~i~~ 170 (773)
T COG5647 92 NYIEEYNR-GRSQENMEEFLDELVKFWNRFTKGATMINHLFLYMDRVYLKKARYDKTLVFEVYSLCLVKEKIESFRLIVD 170 (773)
T ss_pred HHHHHhcc-cccchhHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHhhhH
Confidence 99988642 22222347899999999999999999999999999999999 2345678899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccchhhh
Q 048133 147 KAKDVVITLIDREREGEEIDRALL 170 (172)
Q Consensus 147 ~l~~~il~~I~~eR~g~~id~~li 170 (172)
.+++.+|..+++.|.|+.||+..+
T Consensus 171 ~lin~LL~~~~~~r~~~~id~~yi 194 (773)
T COG5647 171 SLINPLLYYVERYRALQSIDRKYI 194 (773)
T ss_pred HHHHHHHHHHHHHHhcCccCchHH
Confidence 999999999999999999998765
No 5
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.4e-15 Score=118.29 Aligned_cols=158 Identities=19% Similarity=0.336 Sum_probs=136.7
Q ss_pred CcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccccc
Q 048133 4 KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLS 83 (172)
Q Consensus 4 ~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~ 83 (172)
+..-|++.|+..++.+-+++. +..+++..|..||..||..|.+... ...++|+.++..|.+++.+. +..+.
T Consensus 9 ~r~qFee~W~~~rpIVlkLLr------Q~sVt~~~WqDLF~~Vh~vclWddk--GpaKI~d~L~~dI~efi~qA-q~rv~ 79 (777)
T KOG2285|consen 9 DRDQFEEEWSKARPIVLKLLR------QKSVTPAAWQDLFYHVHKVCLWDDK--GPAKIRDILTRDINEFIHQA-QKRVR 79 (777)
T ss_pred chhhhhhhccccchHHHHHHh------hccCCHHHHHHHHhhheeeeeecCC--CcHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 456899999999999999886 2568999999999999999999753 45899999999999998875 34444
Q ss_pred cc-cchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 84 EK-HDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR--------ALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 84 ~~-~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~--------~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
+. .+..+|..|..+|..|...+.++.-.|.-|+.+-..+. +-.++..+.+..|.+++|..++.+|....+.
T Consensus 80 s~q~d~aLL~~YIvEWrkFftQ~niLPlPF~qle~s~~gk~gs~kk~~~eds~vRklMLd~WNe~IF~nIk~rLq~sAmk 159 (777)
T KOG2285|consen 80 SLQTDGALLIGYIVEWRKFFTQANILPLPFKQLEESQAGKRGSVKKTPTEDSSVRKLMLDKWNEIIFMNIKERLQVSAMK 159 (777)
T ss_pred hhccccHHHHHHHHHHHHHHHhcCcCCCcHHHHHHHhhcccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 45689999999999999999999999999999865553 2357999999999999999999999999999
Q ss_pred HHHHHhCCCccchhhh
Q 048133 155 LIDREREGEEIDRALL 170 (172)
Q Consensus 155 ~I~~eR~g~~id~~li 170 (172)
++..||+|+.+|.+++
T Consensus 160 lVhaER~G~a~DaQlV 175 (777)
T KOG2285|consen 160 LVHAERDGNAIDAQLV 175 (777)
T ss_pred HHHHHhccchhhhhhh
Confidence 9999999999998764
No 6
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=4.2e-13 Score=111.35 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhhcccccccc-ccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc-c-CCccHHHHHHHHHHH
Q 048133 62 LYNKCKQDLEEYMSSTVFPSLSE-KHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQ-R-ALPTISEIGLTCFRD 138 (172)
Q Consensus 62 LY~~l~~~i~~~l~~~~~~~l~~-~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~-~-~~~~i~~l~l~~f~~ 138 (172)
||+.+++.++.|++..+.+.-.+ .+...+|+.+.+.|..|+..+..++++|.||||.|+.. + ..+|+|++|+.+|+.
T Consensus 2 ly~~l~~~~~~~~~~~~~q~~~~~~d~~~~l~k~~~~w~~~~~~~~mIRsIfl~lDrt~~~qsnp~v~siWem~l~LFR~ 81 (661)
T KOG2167|consen 2 LYKQLRQICEQHIKAQIEQLRGDELDSVLFLEKIGRCWQPDPKQMIMIRSIFLHLDRTYVLQSNPYVLSIWEMGLQLFRA 81 (661)
T ss_pred hHHHHHHHHHHHHHHHHhhCcCCcchHHHHHHHHhhHhhhhHHhhhhhhheeeecCCcccccCCCCcCCHHHhhHHHHHH
Confidence 79999999999999765322122 23367999999999999999999999999999999998 4 378999999999999
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHhCCCccchhhhc
Q 048133 139 LVFD----ALKHKAKDVVITLIDREREGEEIDRALLK 171 (172)
Q Consensus 139 ~v~~----~~~~~l~~~il~~I~~eR~g~~id~~lik 171 (172)
+++. .+..++.++++..++++|.|+++|+.+|+
T Consensus 82 ~f~~~~~~~vqs~~~N~ll~s~er~rsgeAvdrslLr 118 (661)
T KOG2167|consen 82 HFSQEPQPFVQSKTFNGLLKSIERERSGEAVDRSLLR 118 (661)
T ss_pred HhhccCCchhhccchHHHHHHHHHHhhcchhhHHHHH
Confidence 9997 77899999999999999999999999886
No 7
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [].
Probab=98.43 E-value=1.1e-05 Score=58.15 Aligned_cols=134 Identities=19% Similarity=0.222 Sum_probs=97.4
Q ss_pred cccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH---HHHhcCCCCCchHHHHHHHHHHHHHHHhhccccc
Q 048133 5 EIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVY---STCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPS 81 (172)
Q Consensus 5 ~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy---~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~ 81 (172)
+...++.|+.+..++-.+|+ |+. ...+ .+.+-..|- +.|.++. ....+-+.+++.+..-+..+ ...
T Consensus 2 ~~~~~~~W~~~~~~vl~lF~---g~~-l~~~---iEdlN~lv~~~i~~~~~~~---~~~~~~~dl~elL~tg~~~L-~~~ 70 (158)
T PF08539_consen 2 NMSSDDAWNSLCAKVLPLFQ---GER-LRLP---IEDLNELVRFHIKLCIQSF---PPSYFLEDLEELLTTGMYIL-ENQ 70 (158)
T ss_pred CCchhhhHHHHHHHHHHHHc---CCC-CCcC---HHHHHHHHHHHHHHhhccc---chHHHHHHHHHHHHHHHHHH-HHH
Confidence 45678999999999999886 432 2233 556666655 4555543 23456667777777766654 355
Q ss_pred cccccchHHHHHHHHHHHh-HHHHHHHHHHHhhhhhhhhhcc-----------------cCCccHHHHHHHHHHHHHHHH
Q 048133 82 LSEKHDEHLLRELVKRFAN-HKVMVKWLALCFNYLERYYIRQ-----------------RALPTISEIGLTCFRDLVFDA 143 (172)
Q Consensus 82 l~~~~~~~lL~~~~~~W~~-y~~~~~~l~~if~YLdr~yi~~-----------------~~~~~i~~l~l~~f~~~v~~~ 143 (172)
+....++.+|..++..|.- |..-+-++..+|.-|++.+-.. .+..+|..+++..||+.|+-|
T Consensus 71 l~~~~~~~~l~rL~eiW~~Ff~~VlP~lqavFlPLq~~f~~~~~~~~~~~~~~~~~~~~~~~l~Vr~l~L~~FRD~IvLP 150 (158)
T PF08539_consen 71 LNEVPDNRLLKRLVEIWQFFFTQVLPYLQAVFLPLQLEFQGNGKYMNPSEAREFWGNKAGSELDVRRLLLIAFRDSIVLP 150 (158)
T ss_pred HhhcchhHHHHHHHHHHHHHhcchHHHHHHHHhhhHHhhcccCccCChhhhhccccccCCCCCcHHHHHHHHHHHHhhhc
Confidence 6666778999999999999 5566789999999999654322 134789999999999999988
Q ss_pred HHHHHH
Q 048133 144 LKHKAK 149 (172)
Q Consensus 144 ~~~~l~ 149 (172)
..+++.
T Consensus 151 ~y~~l~ 156 (158)
T PF08539_consen 151 YYQRLK 156 (158)
T ss_pred chHhhh
Confidence 777654
No 8
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=73.54 E-value=23 Score=31.01 Aligned_cols=149 Identities=8% Similarity=-0.002 Sum_probs=88.1
Q ss_pred HhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccccccc---c
Q 048133 9 DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSE---K 85 (172)
Q Consensus 9 ~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~~---~ 85 (172)
.-.|..|++++..|.+.- ...+.-...|-++++.+|+-|...+. +...+.+.++.....+..+..+ .+.. .
T Consensus 111 AvdrslLrsll~MLsd~~---iY~esF~~~fls~f~~lY~aE~~d~~--Qel~v~eYl~h~e~~l~~E~~~-~i~~~D~s 184 (661)
T KOG2167|consen 111 AVDRSLLRSLLKMLSDLQ---IYKESFELTFLSLFRELYAAEGQDKR--QELEVPEYLEHVEGRLEEENDR-VIEYFDSS 184 (661)
T ss_pred hhhHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHhcchh--hhcccHHHHHhhhhcccchHHH-HHHhcccc
Confidence 345788888888876531 11122245577889999999998866 5567777777766666554311 1111 1
Q ss_pred ----cchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 048133 86 ----HDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFR--DLVFDALKHKAKDVVITLIDRE 159 (172)
Q Consensus 86 ----~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~--~~v~~~~~~~l~~~il~~I~~e 159 (172)
.-..+.+.+...|-+...... +++-+|-.=+. ....++.++-..+. ..+..+..+-+......+|..+
T Consensus 185 t~k~l~atV~~~LL~~hL~~IL~kg----l~~lvDm~q~~--d~~rly~L~~r~~~g~l~l~qq~sdylk~~G~KlV~de 258 (661)
T KOG2167|consen 185 TKKPLIATVERCLLSRHLDLILTKG----LDSLVDMRQTS--DLTRLYMLFSRVQGGQLSLLQQWSDYLKKPGFKLVIDE 258 (661)
T ss_pred cccchHHHHHHHHHHHHHHHHHhcc----hHHhhhhhhcc--chHhHHHHHHHHhcchHHHHHHHHHHHhcccceeccCc
Confidence 113566666777766644333 33444433222 23567777777762 2233466777777777777777
Q ss_pred hCCCccchhh
Q 048133 160 REGEEIDRAL 169 (172)
Q Consensus 160 R~g~~id~~l 169 (172)
+.+++...++
T Consensus 259 ~kDk~mVqEL 268 (661)
T KOG2167|consen 259 EKDKDMVQEL 268 (661)
T ss_pred hhhHHHHHHH
Confidence 7776654443
No 9
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=65.52 E-value=32 Score=29.15 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHH
Q 048133 104 MVKWLALCFNYLERYYIRQRALPTISEIGLTCFRD 138 (172)
Q Consensus 104 ~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~ 138 (172)
.-.|+.++..-||++| .+...++++-.++..+++
T Consensus 430 ~~~W~~n~~~ll~~F~-~~~~~~~vRi~aL~~l~e 463 (464)
T PF11864_consen 430 NPDWLDNLQKLLDRFY-NRDRRSEVRIKALDVLEE 463 (464)
T ss_pred ChHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHhh
Confidence 3457777778888998 666678888888888765
No 10
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.43 E-value=77 Score=26.92 Aligned_cols=109 Identities=14% Similarity=0.218 Sum_probs=61.6
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCC-------CCCCCHHHHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHH-HHHHHhhcc
Q 048133 8 MDEGWDIIQKWITKLRRISEGLP-------EPPFNVDDYVMLYS-SVYSTCIQGPHHGYSAQLYNKCKQD-LEEYMSSTV 78 (172)
Q Consensus 8 f~~~W~~l~~~i~~i~~~l~~~~-------~~~~~~~~~~~lY~-~vy~lc~~~~~~~~~~~LY~~l~~~-i~~~l~~~~ 78 (172)
=++-|..|...++.|.+-.+|-. .+-.|.++|+.+|. +|-.+|..+ .|++..+.+-.+ +-+-+.+++
T Consensus 22 ~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkn----cGekfH~evgkfrFLNELIkvv 97 (594)
T KOG1086|consen 22 DEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKN----CGEKFHEEVGKFRFLNELIKVV 97 (594)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999987544311 02237789999998 688999987 667777766543 222223333
Q ss_pred ccccccc-cchHH---HHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 048133 79 FPSLSEK-HDEHL---LRELVKRFANHKVMVKWLALCFNYLERYYI 120 (172)
Q Consensus 79 ~~~l~~~-~~~~l---L~~~~~~W~~y~~~~~~l~~if~YLdr~yi 120 (172)
.|.-..+ ..+.. +-++.-.|.-+---.--+.+++.-|-+.=|
T Consensus 98 sPKYlG~~tSekvKtkiIelLfsWtv~lpe~~KikdaYqmLKkqgI 143 (594)
T KOG1086|consen 98 SPKYLGSRTSEKVKTKIIELLFSWTVSLPEEPKIKDAYQMLKKQGI 143 (594)
T ss_pred CchhcchhhhHHHHHHHHHHHhhheecCcccchHHHHHHHHHhcCc
Confidence 3332211 11111 112344565544444455555555554433
No 11
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=60.52 E-value=69 Score=23.95 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..+..|+..-.- |.|-.+.|...-..-|..+|. .+...++..++..++.
T Consensus 148 ~ilL~~ID~~W~~HL~~m~~Lr~~I~l--R~y~QkdPl~EYk~Ea~~lF~-~m~~~i~~~i~~~l~~ 211 (214)
T PF07516_consen 148 YILLKAIDQNWKDHLDNMDQLREGIGL--RSYGQKDPLVEYKREAFELFE-EMLENIREDIIRNLFR 211 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTC--TTSSSSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHH--HhHccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 357888999999999999999865432 555544433333455666664 3334555555555543
No 12
>PF14164 YqzH: YqzH-like protein
Probab=57.04 E-value=39 Score=20.48 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q 048133 31 EPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYM 74 (172)
Q Consensus 31 ~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l 74 (172)
+.|++..++..|...|-..-... ..+.||+.+...+=+++
T Consensus 23 ~~pls~~E~~~L~~~i~~~~~~~----~~~Dl~eiVeDvVY~yi 62 (64)
T PF14164_consen 23 CMPLSDEEWEELCKHIQERKNEE----PDEDLHEIVEDVVYDYI 62 (64)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHh
Confidence 45788888888888776654444 34788888877776664
No 13
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=56.13 E-value=47 Score=20.70 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=29.1
Q ss_pred CCCCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 048133 1 MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYS 44 (172)
Q Consensus 1 ~~~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~ 44 (172)
|+.+..+|++....|++.|..+-. ..++-..-..+|.
T Consensus 1 Ma~k~~sfEe~l~~LE~IV~~LE~-------~~l~Leesl~~ye 37 (75)
T PRK14064 1 MATKKKTFEEAIAELETIVEALEN-------GSASLEDSLDMYQ 37 (75)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHH
Confidence 788888999999999999988653 3566666666776
No 14
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=48.81 E-value=68 Score=20.38 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=24.0
Q ss_pred HhhH-HHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 048133 9 DEGW-DIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQG 53 (172)
Q Consensus 9 ~~~W-~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~ 53 (172)
+.+| ..+++.+..+... + ..++.++..++..|--.+...
T Consensus 29 e~GW~d~vr~~~re~i~~--~----g~~~~~~~~l~~~i~P~Ar~~ 68 (86)
T PF10163_consen 29 ECGWRDEVRQLCREIIRE--R----GIDNLTFEDLLEEITPKARAM 68 (86)
T ss_dssp HTTHHHHHHHHHHHHHHH--H-----TTTSBHHHHHHHHHHHHHHC
T ss_pred HCChHHHHHHHHHHHHHh--h----CCCCCCHHHHHHHHHHHHHHH
Confidence 4567 6666666666553 1 123335777888887777765
No 15
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=41.72 E-value=2.9e+02 Score=25.92 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..|..|+..-. .|.|-.+.+...-..-|+.+|.+. ...++..++..++.
T Consensus 765 ~i~L~~iD~~W~eHL~~md~Lr~~I~--lr~y~QkdPl~eYk~Ea~~lF~~m-~~~i~~~~~~~l~~ 828 (908)
T PRK13107 765 AVMLQTLDGLWKEHLAAMDHLRQGIH--LRGYAQKNPKQEYKRESFELFQQL-LETLKHDVISVLSK 828 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 46888899999999999999875432 266666555555556777888644 34455555444443
No 16
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=38.98 E-value=1.1e+02 Score=19.89 Aligned_cols=33 Identities=6% Similarity=0.064 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhc
Q 048133 17 KWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQ 52 (172)
Q Consensus 17 ~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~ 52 (172)
++|+.|+..+|.+....++-.+|.. .|-.++.+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~---Lv~~l~~a 80 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFS---LIAGLLIA 80 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH---HHHHHHHH
Confidence 6899999999877666777555555 45444443
No 17
>PF08511 COQ9: COQ9; InterPro: IPR013718 COQ9 is an enzyme that is required for the biosynthesis of coenzyme Q []. It may either catalyse a reaction in the coenzyme Q biosynthetic pathway or have a regulatory role. ; PDB: 3NI7_B.
Probab=37.93 E-value=30 Score=21.83 Aligned_cols=22 Identities=18% Similarity=0.571 Sum_probs=16.8
Q ss_pred CCcccHHhhHHHHHHHHHHHHH
Q 048133 3 HKEIDMDEGWDIIQKWITKLRR 24 (172)
Q Consensus 3 ~~~~~f~~~W~~l~~~i~~i~~ 24 (172)
.+..+|+++|..|+.-|+.+.+
T Consensus 52 d~S~~~~~T~~Fl~rri~~v~~ 73 (79)
T PF08511_consen 52 DKSPDFEDTWAFLDRRIDDVMQ 73 (79)
T ss_dssp --SGGGHHHHHHHHHHHHHH--
T ss_pred CCCCCHHHHHHHHHHHHHhhhc
Confidence 4568999999999999999875
No 18
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=35.84 E-value=3.6e+02 Score=25.02 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..|..|+.--.- |.|-.+.+...-..-|+..|.+ ++..++..++..++.
T Consensus 745 ~i~L~~iD~~W~eHL~~md~LRegI~l--R~y~QkdPl~eY~~ea~~~F~~-m~~~I~~~iv~~l~~ 808 (830)
T PRK12904 745 VVMLQVLDTKWREHLAAMDHLRQGIGL--RGYAQKDPLQEYKREGFELFEE-MLDSIKEEVVRTLMK 808 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcch--hhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 357888889999999999988754332 5666555544555677777753 445566666555544
No 19
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=35.38 E-value=3.8e+02 Score=25.13 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITL 155 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~~ 155 (172)
.-+|..+-..|.++-..|..|+.--. .|.|-.+.+...-..-|+.+|.+ +...++..++..++..
T Consensus 761 ~i~L~~iD~~W~ehL~~md~Lr~~I~--lr~y~QkdPl~eYk~Ea~~~F~~-m~~~i~~~~v~~l~~~ 825 (896)
T PRK13104 761 SIILQTLDNHWREHLAAMDQLRQGIH--LRGYAQKDPKQEYKKEAFSLFTM-MLDNLKYEVIRILSSV 825 (896)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 36888889999999999998875433 26666655555556778888864 4456666666666664
No 20
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=34.18 E-value=4.2e+02 Score=25.25 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..|..|+.--. .|.|-.+.+...-..-|+.+|.+. ...++..++..++.
T Consensus 877 ~i~L~~iD~~W~eHL~~md~Lr~~I~--lr~y~QkdPl~eYk~Ea~~lF~~m-~~~i~~~~v~~l~~ 940 (1025)
T PRK12900 877 YAVLSVIDQKWREHLREIDSLREGIN--LRAYGQKDPLLEYKQEAYRLFVDL-LREIELETLSLAFK 940 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 46788888999999999888875432 256655555445556777888644 34555555555544
No 21
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=33.09 E-value=4.2e+02 Score=24.92 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..|..|+..-.- |.|-.+.+...-..-|+.+|.+. ...++..++..++.
T Consensus 765 ~i~L~~iD~~W~eHL~~md~Lr~~I~l--r~y~QkdPl~eYk~Ea~~~F~~m-~~~i~~~~v~~l~~ 828 (913)
T PRK13103 765 QILLRVLDDLWKDHLSTMDHLRHGIHL--RGYAQKNPKQEYKRESFTLFQEL-LDSIKRDTIRVLSH 828 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhccCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 467888889999999999988754332 66666555555566778888644 34555555555444
No 22
>PHA00425 DNA packaging protein, small subunit
Probab=32.64 E-value=1.3e+02 Score=19.05 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHHHH
Q 048133 58 YSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVM 104 (172)
Q Consensus 58 ~~~~LY~~l~~~i~~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~~~ 104 (172)
...+||+.+-..+.+|=-.+. .+ ..++..|-.+...-+.|...
T Consensus 31 RtPQLYnAIgKlL~RHkF~is--Kl--~pD~~iLg~la~~l~ey~~~ 73 (88)
T PHA00425 31 RTPQLYNAIGKLLDRHKFQIS--KL--QPDENILGGLAAALEEYKEK 73 (88)
T ss_pred cChHHHHHHHHHHHHhccccc--cc--CCcHHHHHHHHHHHHHHHHh
Confidence 458999999999999844431 22 24667777777777777664
No 23
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=31.01 E-value=4.5e+02 Score=24.60 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVI 153 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il 153 (172)
.-+|..+-..|.++-..+..|+.--.. |.|-.+.+...-..-|+.+|.+ +...++..++..++
T Consensus 803 ~~~L~~iD~~W~eHL~~md~Lr~~I~l--R~ygQkdPl~EYk~Ea~~~F~~-m~~~i~~~~v~~l~ 865 (870)
T CHL00122 803 SLLLQQIDKSWKEHLQKMSLLREAIGW--RSYGQKDPLIEYKNEAFNLFIN-MINHIRHLVIYDLF 865 (870)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcch--hhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 357888899999999999998765433 6666665555555667777753 33455555555543
No 24
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=30.64 E-value=2.3e+02 Score=21.04 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCCC--chHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 048133 42 LYSSVYSTCIQGPHHG--YSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYL 115 (172)
Q Consensus 42 lY~~vy~lc~~~~~~~--~~~~LY~~l~~~i~~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YL 115 (172)
|+...+++..++|... .-.+||+.+-+.+++- ...++ .....+.|.-|..-+.-|++|+.+|
T Consensus 126 LryDL~tiIsskP~~eK~~L~~LankLFdnvt~L-DyAAR-----------~K~~~eae~yY~~Tv~slddVl~~l 189 (190)
T PLN02999 126 LSQDLTNAMNILPESRRNDYVQAANELVENMSEL-DYYVR-----------TPKVYESYLYYEKTLKSIDNVVELL 189 (190)
T ss_pred HHHHHHHHHhcCCHhhhHHHHHHHHHHhhhHHHH-HHHHh-----------cCChHHHHHHHHHHHHHHHHHHHHh
Confidence 7778888877775411 1123444444333321 11100 1114467889999999999999887
No 25
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=29.88 E-value=17 Score=24.72 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=24.7
Q ss_pred ccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 048133 6 IDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQG 53 (172)
Q Consensus 6 ~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~ 53 (172)
.|+++.|..|.++|+.+++.. | +..-|..+-.+...+
T Consensus 46 ~dL~~nWeVlaEpIQTvmRr~-g----------~~~pYE~LK~lTRg~ 82 (115)
T PF08328_consen 46 EDLDENWEVLAEPIQTVMRRY-G----------IPNPYEKLKELTRGK 82 (115)
T ss_dssp HHHCT-GGGGHHHHHHHHHHT-T-----------SSHHHHHHHHHTTS
T ss_pred HHHHHCHHHHHHHHHHHHHHc-C----------CCCHHHHHHHHHcCC
Confidence 478999999999999999742 1 223455556666544
No 26
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=29.71 E-value=4.6e+02 Score=24.28 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..|..|+.--.- |.|-.+.+...-..-|+.+|.+ +...++..++..++.
T Consensus 726 ~i~L~~ID~~W~eHL~~md~LRegI~L--R~ygQkDPl~EYk~Ea~~lF~~-m~~~i~~~iv~~~~~ 789 (796)
T PRK12906 726 VVILRVVDSHWTDHIDAMDQLRQSIGL--RGYGQLNPLVEYQEEGYRMFEE-MISNIDYDVTRLFMK 789 (796)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 357888899999999999998754332 6666655555556677888764 334556655555544
No 27
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.19 E-value=2e+02 Score=19.62 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHH-HHHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHHHHHHH
Q 048133 40 VMLYSSVYSTCIQGPHHGYSAQLY-NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKW 107 (172)
Q Consensus 40 ~~lY~~vy~lc~~~~~~~~~~~LY-~~l~~~i~~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~~~~~~ 107 (172)
--||..|-.+-..-|+ ....|= +.+++.+..|-. .+...+..|.+.|++|..++.-
T Consensus 13 rlLYkriLrlHr~lp~--~~R~lGD~YVkdEFrrHk~----------vnp~~~~~FlteW~~Ya~~l~q 69 (125)
T KOG4100|consen 13 RLLYKRILRLHRGLPA--ELRALGDQYVKDEFRRHKT----------VNPLEAQGFLTEWERYAVALSQ 69 (125)
T ss_pred HHHHHHHHHHHccCCh--HHHHHHHHHHHHHHHHhcc----------CChHHHHHHHHHHHHHHHHHHH
Confidence 3488888887776543 112222 224444444411 1456788899999999986643
No 28
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.39 E-value=1.6e+02 Score=18.44 Aligned_cols=43 Identities=33% Similarity=0.349 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHHHH
Q 048133 58 YSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVM 104 (172)
Q Consensus 58 ~~~~LY~~l~~~i~~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~~~ 104 (172)
.+.+||+.+-.++.+|=-.+. .+. .++..|-.+...-+.|...
T Consensus 29 RsPQLYnAI~k~L~RHkF~is--kl~--pd~~~LG~L~~aL~ey~~~ 71 (82)
T PF11123_consen 29 RSPQLYNAIGKLLDRHKFQIS--KLQ--PDENILGELAAALEEYKKM 71 (82)
T ss_pred cChHHHHHHHHHHHHccchhh--hcC--ccHHHHHHHHHHHHHHHHH
Confidence 568999999999999844331 222 3456666666666666653
No 29
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=26.95 E-value=27 Score=16.92 Aligned_cols=13 Identities=8% Similarity=0.547 Sum_probs=10.0
Q ss_pred CcccHHhhHHHHH
Q 048133 4 KEIDMDEGWDIIQ 16 (172)
Q Consensus 4 ~~~~f~~~W~~l~ 16 (172)
+...|+..|+.+.
T Consensus 11 SQeTF~~LW~~l~ 23 (25)
T PF08563_consen 11 SQETFSDLWNLLP 23 (25)
T ss_dssp STCCHHHHHHTSS
T ss_pred cHHHHHHHHHhcc
Confidence 5678999998653
No 30
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=26.18 E-value=5.6e+02 Score=24.19 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVI 153 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il 153 (172)
.-+|..+-..|.++-..|..|+..-.. |.|-.+.+...-..-|+.+|.+ +...++..++..++
T Consensus 863 ~i~L~~iD~~W~eHL~~md~Lre~I~l--R~ygQkdPl~EYk~Ea~~~F~~-m~~~ir~~vv~~l~ 925 (939)
T PRK12902 863 FFILQQIDTLWREHLQSMDALRESVGL--RGYGQKDPLIEYKNEGYEMFLE-MMTNIRRNVVYSLF 925 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 357888889999999999998865433 5665555444455667777753 33445555554443
No 31
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.74 E-value=1.9e+02 Score=18.25 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=32.0
Q ss_pred CCCCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 048133 1 MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYST 49 (172)
Q Consensus 1 ~~~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~l 49 (172)
|+.+..+|++....|++.+.++-. ..++-..-..+|.---.+
T Consensus 2 m~~k~~sfEeal~~LEeIV~~LE~-------~~l~Lees~~lyeeG~~L 43 (80)
T PRK14067 2 GRKKTADFEQQLARLQEIVDALEG-------GDLPLEESVALYKEGLGL 43 (80)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHH
Confidence 777889999999999999998753 356667777777743333
No 32
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.02 E-value=1.3e+02 Score=15.70 Aligned_cols=31 Identities=13% Similarity=0.390 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 127 TISEIGLTCFRDLVFDALKHKAKDVVITLID 157 (172)
Q Consensus 127 ~i~~l~l~~f~~~v~~~~~~~l~~~il~~I~ 157 (172)
++-++|+..|.+.--.-+..-+.+.++...+
T Consensus 2 TLaqlg~~~WhDLAAP~iagIi~s~iv~w~~ 32 (35)
T PF13940_consen 2 TLAQLGIAFWHDLAAPIIAGIIASLIVGWLR 32 (35)
T ss_pred cHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 5778999999877655555555555554443
No 33
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=22.90 E-value=6.5e+02 Score=23.75 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITL 155 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~~ 155 (172)
.-+|..+-..|.++-..|..|+..-.- |.|-.+.+...-..-|+.+|.+. ...++..++..++..
T Consensus 714 ~i~L~~iD~~W~eHL~~md~Lr~~I~l--R~y~QkdPl~eYk~Ea~~~F~~m-~~~i~~~~v~~l~~~ 778 (925)
T PRK12903 714 YIILSALDKYWQNHIDTMDKLRSGVNL--VQYSQKNPYQVYTEEGTKKFNIL-LQEIAYDVIVSLFNN 778 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhccCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 358889999999999999999864332 66666665555667778888643 345555555555443
No 34
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=22.23 E-value=1.2e+02 Score=17.98 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhCCCccchhh
Q 048133 145 KHKAKDVVITLIDREREGEEIDRAL 169 (172)
Q Consensus 145 ~~~l~~~il~~I~~eR~g~~id~~l 169 (172)
..++..++-++|...|.|..||-+-
T Consensus 30 ~~R~~K~~~~~I~~~~aG~pVd~~~ 54 (59)
T smart00685 30 HLRIAKQFDDAIKAARAGRPVDLSE 54 (59)
T ss_pred HHHHHhhHHHHHHHHHCCCCCChhc
Confidence 3567888899999999999988653
No 35
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=21.76 E-value=6.5e+02 Score=23.31 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVI 153 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il 153 (172)
.-+|..+-..|.++-..|..|+.--.- |.|-.+.+...-..-|+..|.+ +...++..++..++
T Consensus 711 ~i~L~~ID~~W~eHLd~Md~LRegI~L--RsYgQKDPL~EYkkEa~~lFe~-M~~~I~~~~v~~l~ 773 (790)
T PRK09200 711 KVALKAIDQNWVEQVDALQQLKEGIGL--RQYGQRNPIREYQKEALESFEY-MYENIKKDMVRNLL 773 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 358888999999999999998764433 6666655555555677777754 33455555555543
No 36
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=21.34 E-value=1.3e+02 Score=19.27 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred cccHHhhHHHHHHHHHHHHHH
Q 048133 5 EIDMDEGWDIIQKWITKLRRI 25 (172)
Q Consensus 5 ~~~f~~~W~~l~~~i~~i~~~ 25 (172)
..++++.|+.+-++++.|+..
T Consensus 60 ~~d~d~~~~~vvd~~D~LlEk 80 (91)
T PF08066_consen 60 VDDVDERWDSVVDVNDSLLEK 80 (91)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999874
No 37
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=21.15 E-value=1.1e+02 Score=14.34 Aligned_cols=21 Identities=0% Similarity=-0.018 Sum_probs=10.8
Q ss_pred HHHHHhcCCCCCCCCHHHHHH
Q 048133 21 KLRRISEGLPEPPFNVDDYVM 41 (172)
Q Consensus 21 ~i~~~l~~~~~~~~~~~~~~~ 41 (172)
+.+..++.+....++..+|..
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 344455444444566555554
No 38
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=20.03 E-value=1.7e+02 Score=15.92 Aligned_cols=14 Identities=7% Similarity=0.404 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 048133 132 GLTCFRDLVFDALK 145 (172)
Q Consensus 132 ~l~~f~~~v~~~~~ 145 (172)
-+.-|+..++..++
T Consensus 4 dle~~KqEIL~Evr 17 (40)
T PF08776_consen 4 DLERLKQEILEEVR 17 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 46677777776443
Done!