Query 048133
Match_columns 172
No_of_seqs 120 out of 735
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 11:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 7.6E-38 2.6E-42 252.2 13.7 161 1-172 6-168 (364)
2 2wzk_A Cullin-5, CUL-5; UBL co 100.0 3.2E-37 1.1E-41 250.6 14.9 161 4-172 11-179 (391)
3 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 5E-37 1.7E-41 250.7 14.4 159 3-172 25-185 (410)
4 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 1.4E-36 4.8E-41 244.0 15.8 159 3-172 5-167 (354)
5 1ldj_A Cullin homolog 1, CUL-1 100.0 9.7E-35 3.3E-39 252.5 11.0 158 8-172 1-187 (760)
6 2hye_C Cullin-4A, CUL-4A; beta 100.0 7.1E-33 2.4E-37 240.7 10.3 156 5-172 56-216 (759)
7 4dhx_B Enhancer of yellow 2 tr 43.1 39 0.0013 21.5 4.2 39 9-53 39-78 (101)
8 3mhs_B Protein SUS1; multi-pro 34.6 85 0.0029 19.6 5.0 57 9-77 35-92 (96)
9 1tf5_A Preprotein translocase 29.7 3E+02 0.01 24.4 9.4 64 88-154 717-780 (844)
10 2fsf_A Preprotein translocase 29.7 3E+02 0.01 24.4 9.8 64 88-154 757-820 (853)
11 2fu2_A Hypothetical protein SP 26.3 1.2E+02 0.0042 18.9 5.4 91 14-113 6-98 (102)
12 1nh2_B Transcription initiatio 24.4 79 0.0027 17.5 2.9 40 60-102 6-45 (53)
13 2ipc_A Preprotein translocase 23.5 4.1E+02 0.014 24.0 8.7 64 88-154 872-935 (997)
14 1nvp_B Transcription initiatio 23.1 74 0.0025 17.9 2.7 41 59-102 9-49 (57)
15 1nkt_A Preprotein translocase 22.1 4.3E+02 0.015 23.7 9.9 64 88-154 799-862 (922)
16 3jux_A Protein translocase sub 20.6 4.4E+02 0.015 23.2 9.8 63 88-153 752-814 (822)
No 1
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=7.6e-38 Score=252.20 Aligned_cols=161 Identities=22% Similarity=0.456 Sum_probs=145.1
Q ss_pred CCCCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccc
Q 048133 1 MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFP 80 (172)
Q Consensus 1 ~~~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~ 80 (172)
|+..+.+|+++|+.|++||+.|+. +++ +..+||++|+.||++|+++ +|+.||+++++.+++|+...+.+
T Consensus 6 ~~~~~~~~~~~W~~L~~ai~~I~~---~~~----~~~s~e~LY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~ 74 (364)
T 4eoz_B 6 MTMDEKYVNSIWDLLKNAIQEIQR---KNN----SGLSFEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVRE 74 (364)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHT---TCG----GGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHHh---cCC----CCCCHHHHHHHHHHHHhhh----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667999999999999999986 232 3456999999999999987 89999999999999999944457
Q ss_pred ccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 048133 81 SLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFD--ALKHKAKDVVITLIDR 158 (172)
Q Consensus 81 ~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~--~~~~~l~~~il~~I~~ 158 (172)
.+.+..++.||+.+.+.|++|+.++.+|+++|+||||+|+++++.++|+++|+.+|+++||. +++++++++++++|++
T Consensus 75 ~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~ 154 (364)
T 4eoz_B 75 DVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIAR 154 (364)
T ss_dssp HHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 77776677899999999999999999999999999999999998999999999999999997 8999999999999999
Q ss_pred HhCCCccchhhhcC
Q 048133 159 EREGEEIDRALLKN 172 (172)
Q Consensus 159 eR~g~~id~~lik~ 172 (172)
+|+|+.||+.+||+
T Consensus 155 eR~Ge~id~~lik~ 168 (364)
T 4eoz_B 155 ERKGEVVDRGAIRN 168 (364)
T ss_dssp HHTTCCCCHHHHHH
T ss_pred HhCCCCCCHHHHHH
Confidence 99999999999873
No 2
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=3.2e-37 Score=250.60 Aligned_cols=161 Identities=20% Similarity=0.388 Sum_probs=143.0
Q ss_pred CcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccccc
Q 048133 4 KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLS 83 (172)
Q Consensus 4 ~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~ 83 (172)
++.+|+++|+.|++||++|+. ..+++..+||++|+.||++|++++. +|+.||+++++.+++|+..++.+...
T Consensus 11 ~~~~~e~~W~~L~~ai~~I~~------~~~~~~~s~e~LY~~vy~lc~~~~~--~~~~LY~~l~~~~~~~l~~~~~~~~~ 82 (391)
T 2wzk_A 11 GSLQFEDKWDFMHPIVLKLLR------QESVTKQQWFDLFSDVHAVCLWDDK--GSSKIHQALKEDILEFIKQAQARVLS 82 (391)
T ss_dssp -CCSHHHHHHHHHHHHHHHHH------TCCCCHHHHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHh------CCCCChHHHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999987 1468899999999999999998654 89999999999999999987643322
Q ss_pred cccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 84 EKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR--------ALPTISEIGLTCFRDLVFDALKHKAKDVVITL 155 (172)
Q Consensus 84 ~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~--------~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~~ 155 (172)
..+++.||+.|.+.|++|+.++.+|+++|+||||+|+.++ +.++|+++|+.+||++||.+++++++++++++
T Consensus 83 ~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll~l 162 (391)
T 2wzk_A 83 HQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKL 162 (391)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345789999999999999999999999999999999653 35699999999999999999999999999999
Q ss_pred HHHHhCCCccchhhhcC
Q 048133 156 IDREREGEEIDRALLKN 172 (172)
Q Consensus 156 I~~eR~g~~id~~lik~ 172 (172)
|+++|+|+.||+++||+
T Consensus 163 I~~eR~Ge~id~~llk~ 179 (391)
T 2wzk_A 163 VHAERLGEAFDSQLVIG 179 (391)
T ss_dssp HHHHHTTCCCCTHHHHH
T ss_pred HHHHhCCCCCCHHHHHH
Confidence 99999999999998873
No 3
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=250.70 Aligned_cols=159 Identities=21% Similarity=0.455 Sum_probs=144.0
Q ss_pred CCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccccc
Q 048133 3 HKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSL 82 (172)
Q Consensus 3 ~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l 82 (172)
..+.+|+++|+.|++||+.|+. +++ +..+||+||+.||++|+++ .|+.||+++++.+++|+...+.+.+
T Consensus 25 ~~~~~~~~~W~~L~~ai~~I~~---~~~----~~~s~eeLY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~l 93 (410)
T 4ap2_B 25 MDEKYVNSIWDLLKNAIQEIQR---KNN----SGLSFEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDV 93 (410)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHT---TCC----TTCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHh---cCC----CCCCHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999886 332 2456999999999999987 8999999999999999994445777
Q ss_pred ccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Q 048133 83 SEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFD--ALKHKAKDVVITLIDRER 160 (172)
Q Consensus 83 ~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~--~~~~~l~~~il~~I~~eR 160 (172)
.+..++.||+.|.+.|++|+.++.+|+++|+||||+|+++++.++|+++|+.+|+++||. +++++++++++++|+++|
T Consensus 94 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR 173 (410)
T 4ap2_B 94 LNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARER 173 (410)
T ss_dssp HTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHc
Confidence 776677899999999999999999999999999999999998999999999999999997 899999999999999999
Q ss_pred CCCccchhhhcC
Q 048133 161 EGEEIDRALLKN 172 (172)
Q Consensus 161 ~g~~id~~lik~ 172 (172)
+|+.||+.+||+
T Consensus 174 ~Ge~id~~lik~ 185 (410)
T 4ap2_B 174 KGEVVDRGAIRN 185 (410)
T ss_dssp TTCCCCHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 999999999873
No 4
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=243.97 Aligned_cols=159 Identities=27% Similarity=0.461 Sum_probs=141.1
Q ss_pred CCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccccc
Q 048133 3 HKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSL 82 (172)
Q Consensus 3 ~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l 82 (172)
..+.+|+++|+.|++||++|+. +++ +..+||++|+.||++|+++ +|+.||+++++.++.|+...+.+..
T Consensus 5 ~~~~~~~~~W~~L~~ai~~I~~---~~~----~~~s~eeLY~~vy~lc~~~----~g~~LY~~l~~~~~~~l~~~~~~~~ 73 (354)
T 4a64_A 5 LPENYTDETWQKLKEAVEAIQN---STS----IKYNLEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFR 73 (354)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHT---TCC----CCSCHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHTTGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHh---CCC----CCCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999986 332 2346999999999999998 8999999999999999998764433
Q ss_pred ccc-cchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC-CccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 048133 83 SEK-HDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA-LPTISEIGLTCFRDLVFD--ALKHKAKDVVITLIDR 158 (172)
Q Consensus 83 ~~~-~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~-~~~i~~l~l~~f~~~v~~--~~~~~l~~~il~~I~~ 158 (172)
... +++.||+.+.+.|++|+.++.+|+++|+||||+|+++++ .++|+++|+.+|+++||. +++++++++++++|++
T Consensus 74 ~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~ 153 (354)
T 4a64_A 74 EDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIER 153 (354)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 322 346899999999999999999999999999999999886 789999999999999997 7999999999999999
Q ss_pred HhCCCccchhhhcC
Q 048133 159 EREGEEIDRALLKN 172 (172)
Q Consensus 159 eR~g~~id~~lik~ 172 (172)
+|+|+.||+.+||+
T Consensus 154 eR~Ge~id~~lik~ 167 (354)
T 4a64_A 154 ERNGEAIDRSLLRS 167 (354)
T ss_dssp HHTTCCCCHHHHHH
T ss_pred HhCCCCCCHHHHHH
Confidence 99999999999873
No 5
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=9.7e-35 Score=252.46 Aligned_cols=158 Identities=25% Similarity=0.470 Sum_probs=140.6
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCC-----------------------CCCchHHHHH
Q 048133 8 MDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGP-----------------------HHGYSAQLYN 64 (172)
Q Consensus 8 f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~-----------------------~~~~~~~LY~ 64 (172)
|+++|+.|++||+.|+. + .+++..+||++|+.||++|+++. |.++|+.||+
T Consensus 1 f~~~W~~L~~ai~~I~~---~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~ 74 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYT---R---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK 74 (760)
T ss_dssp CHHHHHHHHHHHHHHTT---C---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred ChhhHHHHHHHHHHHHh---c---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence 68999999999999886 1 36899999999999999999862 2247899999
Q ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC------CccHHHHHHHHHHH
Q 048133 65 KCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA------LPTISEIGLTCFRD 138 (172)
Q Consensus 65 ~l~~~i~~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~------~~~i~~l~l~~f~~ 138 (172)
+++++++.|+.+++ ..+....++.||..|.+.|++|+.++++|+++|+||||+|++++. .++|+++|+.+||+
T Consensus 75 ~l~~~l~~~l~~~~-~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~ 153 (760)
T 1ldj_A 75 RLKEFLKNYLTNLL-KDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD 153 (760)
T ss_dssp HHHHHHHHHHHHHH-HTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHH-HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHH
Confidence 99999999999876 344555678999999999999999999999999999999999875 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccchhhhcC
Q 048133 139 LVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172 (172)
Q Consensus 139 ~v~~~~~~~l~~~il~~I~~eR~g~~id~~lik~ 172 (172)
+||.+++++++++++++|+++|+|+.||+.+||+
T Consensus 154 ~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~ 187 (760)
T 1ldj_A 154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISG 187 (760)
T ss_dssp HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 9999999999999999999999999999999873
No 6
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=99.98 E-value=7.1e-33 Score=240.73 Aligned_cols=156 Identities=24% Similarity=0.456 Sum_probs=138.7
Q ss_pred cccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccccccc
Q 048133 5 EIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSE 84 (172)
Q Consensus 5 ~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~~ 84 (172)
+.+|+++|+.|++||+.|+. +++ .+ .+||++|+.||++|+++ +|+.||+++++.++.|+..++ +.+..
T Consensus 56 ~~~~e~~W~~L~~ai~~I~~---~~~-~~---~s~e~LY~~vy~lc~~k----~~~~LY~~l~~~~~~~l~~~~-~~l~~ 123 (759)
T 2hye_C 56 DNYTQDTWRKLHEAVRAVQS---STS-IR---YNLEELYQAVENLCSHK----VSPMLYKQLRQACEDHVQAQI-LPFRE 123 (759)
T ss_dssp CCTTTTHHHHHHHHHHTTST---TCC-CS---SCHHHHHHHHHHHCCTT----THHHHHHHHHHHHHHHHHHHH-HHHTS
T ss_pred cchHHHHHHHHHHHHHHHHh---CCC-CC---CCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 45679999999999999875 332 23 34999999999999998 789999999999999999875 55533
Q ss_pred --ccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC-CccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 048133 85 --KHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA-LPTISEIGLTCFRDLVFDA--LKHKAKDVVITLIDRE 159 (172)
Q Consensus 85 --~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~-~~~i~~l~l~~f~~~v~~~--~~~~l~~~il~~I~~e 159 (172)
.+++.||+.|...|++|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++||.. ++++++++++++|+++
T Consensus 124 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~e 203 (759)
T 2hye_C 124 DSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERE 203 (759)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 2335899999999999999999999999999999999986 7899999999999999996 9999999999999999
Q ss_pred hCCCccchhhhcC
Q 048133 160 REGEEIDRALLKN 172 (172)
Q Consensus 160 R~g~~id~~lik~ 172 (172)
|+|+.||+.+||+
T Consensus 204 R~Ge~id~~llk~ 216 (759)
T 2hye_C 204 RSGEAVDRSLLRS 216 (759)
T ss_dssp TTTCCCCHHHHHH
T ss_pred hcCCCCcHHHHHH
Confidence 9999999998873
No 7
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=43.14 E-value=39 Score=21.48 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=21.0
Q ss_pred HhhH-HHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 048133 9 DEGW-DIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQG 53 (172)
Q Consensus 9 ~~~W-~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~ 53 (172)
+.+| ..++..+..+...- ..++.++.+++..|---..+.
T Consensus 39 EcGW~Devr~~~r~~i~~~------g~~~vt~~~L~~~I~P~Ar~~ 78 (101)
T 4dhx_B 39 ECGWKDQLKAHCKEVIKEK------GLEHVTVDDLVAEITPKGRAL 78 (101)
T ss_dssp HTTHHHHHHHHHHHHHHHH------CTTTCCHHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHHHc------CCCCCCHHHHHHHHhHHHHHH
Confidence 4566 56666666655431 122234666777666555544
No 8
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=34.58 E-value=85 Score=19.63 Aligned_cols=57 Identities=14% Similarity=0.331 Sum_probs=30.3
Q ss_pred HhhH-HHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhc
Q 048133 9 DEGW-DIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSST 77 (172)
Q Consensus 9 ~~~W-~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~ 77 (172)
+.+| ..++..+..+...- ..+ ++..|+..|---..+.-| +.+...+-..|..++..+
T Consensus 35 EcGW~Devr~~~r~~i~~~-----~~v---t~~~L~~~I~P~Ar~~VP----~~VK~Ell~~Ir~fL~~~ 92 (96)
T 3mhs_B 35 QEGWVDKVKDLTKSEMNIN-----EST---NFTQILSTVEPKALEMVS----DSTRETVLKQIREFLEEI 92 (96)
T ss_dssp HTTHHHHHHHHHHHHHHHH-----TCC---CHHHHHHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHHhc-----CCC---CHHHHHHHHhHHHHHHCC----HHHHHHHHHHHHHHHHHH
Confidence 4566 56666666655421 122 366677766666655522 555555555555555444
No 9
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=29.73 E-value=3e+02 Score=24.40 Aligned_cols=64 Identities=16% Similarity=0.307 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..+..|+.--.- |.|-.+.+...-..-|+.+|.+ ++..++..++..++.
T Consensus 717 ~~~l~~~D~~W~~hl~~m~~lr~~i~l--r~~~q~dp~~ey~~e~~~~f~~-m~~~i~~~~~~~l~~ 780 (844)
T 1tf5_A 717 VIVLRAVDSKWMDHIDAMDQLRQGIHL--RAYAQTNPLREYQMEGFAMFEH-MIESIEDEVAKFVMK 780 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGG--TSCSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 458999999999999999999865332 5665555444455667777754 344555555555543
No 10
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=29.66 E-value=3e+02 Score=24.42 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..|..|+.--.- |.|-.+.+...-..-|+.+|.+ ++..++..++..++.
T Consensus 757 ~~~L~~iD~~W~~hl~~md~Lr~~i~l--r~y~q~dP~~ey~~e~~~~F~~-m~~~i~~~~~~~l~~ 820 (853)
T 2fsf_A 757 GVMLQTLDSLWKEHLAAMDYLRQGIHL--RGYAQKDPKQEYKRESFSMFAA-MLESLKYEVISTLSK 820 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT--SSCSSSCTTTHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 358888999999999999999865432 6777766777777888888864 456666666666665
No 11
>2fu2_A Hypothetical protein SPY2152; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.15A {Streptococcus pyogenes}
Probab=26.34 E-value=1.2e+02 Score=18.93 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccccccc-cc-hHHH
Q 048133 14 IIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEK-HD-EHLL 91 (172)
Q Consensus 14 ~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~~~-~~-~~lL 91 (172)
.|-+.|+.++. ++...-+..--..+.+....+-...+ . ..+.-+|...|..|+... .-.+... .+ ..++
T Consensus 6 ~L~~~i~~ay~----d~ev~~~~~L~~~il~aa~~L~k~~n---~-~~va~kL~~~i~~Yll~h-~~~~P~sl~~L~~~i 76 (102)
T 2fu2_A 6 EILDALSKVYS----EQVIQADDYFRQAIFELASQLEKEGM---S-SLLATKIDSLINQYILTH-QFDAPKSIFDLSRLV 76 (102)
T ss_dssp HHHHHHHHHHT----CHHHHTCHHHHHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhC----ChhhccCHHHHHHHHHHHHHhhcCCC---H-HHHHHHHHHHHHHHHHHc-CccCCHHHHHHHHHH
Confidence 45566666664 22222333434447777777755432 2 444556777777776543 0011110 01 2456
Q ss_pred HHHHHHHHhHHHHHHHHHHHhh
Q 048133 92 RELVKRFANHKVMVKWLALCFN 113 (172)
Q Consensus 92 ~~~~~~W~~y~~~~~~l~~if~ 113 (172)
......|..+-....|+..+|.
T Consensus 77 ~k~~~kyrg~~~~~~~l~~~f~ 98 (102)
T 2fu2_A 77 KTKASHYKGTAISAIMLGSFLS 98 (102)
T ss_dssp HHC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6666777777777777777663
No 12
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=24.44 E-value=79 Score=17.47 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHH
Q 048133 60 AQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHK 102 (172)
Q Consensus 60 ~~LY~~l~~~i~~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~ 102 (172)
..+|..+-+..-+.++.- -....-+++.|..+.+.|+.=-
T Consensus 6 ~~vY~~VI~dVI~~vr~~---F~~~Gvde~vL~eLk~~We~KL 45 (53)
T 1nh2_B 6 SRVYEIIVESVVNEVRED---FENAGIDEQTLQDLKNIWQKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHTHHH---HHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHcCCcHHHHHHHHHHHHHHH
Confidence 446665554443333321 1233346789999999998633
No 13
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=23.49 E-value=4.1e+02 Score=24.00 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..+..|+.--. -|.|-.+.+...-..-|..+|.+ ++..++..++..++.
T Consensus 872 ~~~L~~iD~~W~eHl~~md~Lr~~i~--lr~y~q~dPl~eyk~e~~~~F~~-m~~~i~~~~~~~l~~ 935 (997)
T 2ipc_A 872 FVILNVVDNAWKEHLHNLDVLRQGIF--LRGYGQKDPFQEYKIEATRLFNE-MVAFIKSEVAKFLFR 935 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--SCCSSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hhcccCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 35888999999999999999985432 25555544444445567777753 345555555555543
No 14
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=23.12 E-value=74 Score=17.89 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHH
Q 048133 59 SAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHK 102 (172)
Q Consensus 59 ~~~LY~~l~~~i~~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~ 102 (172)
...+|..+-+..-+-++.- ...+.-+++.|..+.+.|+.=-
T Consensus 9 v~~vY~~VIedVI~~vr~~---F~~~Gvde~vL~eLk~~We~KL 49 (57)
T 1nvp_B 9 VPKLYRSVIEDVINDVRDI---FLDDGVDEQVLMELKTLWENKL 49 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHH
Confidence 3567776665554443322 2233456789999999998633
No 15
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=22.12 E-value=4.3e+02 Score=23.68 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVIT 154 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~ 154 (172)
.-+|..+-..|.++-..|..|+.--.- |.|-.+.+...-..-|+.+|.+ ++..++..++..++.
T Consensus 799 ~~~L~~iD~~W~eHl~~md~Lr~~i~l--r~y~q~dPl~eyk~e~~~~F~~-m~~~i~~~~~~~l~~ 862 (922)
T 1nkt_A 799 NVLLNVIDRKWREHLYEMDYLKEGIGL--RAMAQRDPLVEYQREGYDMFMA-MLDGMKEESVGFLFN 862 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG--GCBTTBCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 358999999999999999999865432 6666555544555667777753 445666666666654
No 16
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=20.61 E-value=4.4e+02 Score=23.24 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133 88 EHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVI 153 (172)
Q Consensus 88 ~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il 153 (172)
.-+|..+-..|.++-..+..|+.--.- |.|-.+.+...-..-|..+|.+ ++..++..++..++
T Consensus 752 ~i~L~~iD~~W~~hl~~md~Lr~~i~l--r~y~q~dPl~eyk~e~~~~F~~-m~~~i~~~~~~~~~ 814 (822)
T 3jux_A 752 FLMLRIIDDHWRRYLEEVEHVKEAVQL--RSYGQKDPIVEFKKETYYMFDE-MMRRINDTIANYVL 814 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTTTSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 457888999999999999999864332 6665554433444557777753 33455555555444
Done!