Query 048135
Match_columns 1189
No_of_seqs 759 out of 5165
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-78 3.4E-83 732.2 40.5 734 43-817 60-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 2E-66 4.3E-71 667.7 49.7 525 34-624 133-687 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.6E-41 9.9E-46 372.0 15.0 258 139-399 19-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 8.5E-37 1.8E-41 396.5 26.4 508 517-1185 86-605 (968)
5 PLN00113 leucine-rich repeat r 100.0 7.5E-35 1.6E-39 378.3 26.2 506 524-1186 69-583 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 3.7E-29 8.1E-34 257.2 -12.4 464 520-1137 64-539 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 8.4E-29 1.8E-33 254.6 -18.3 99 524-624 45-143 (565)
8 KOG0618 Serine/threonine phosp 99.9 9.8E-27 2.1E-31 264.5 -4.9 457 523-1160 44-509 (1081)
9 PLN03210 Resistant to P. syrin 99.9 1.4E-22 3.1E-27 262.1 23.2 271 875-1188 628-907 (1153)
10 KOG0618 Serine/threonine phosp 99.9 2.1E-25 4.5E-30 253.8 -5.5 251 881-1187 219-489 (1081)
11 KOG4194 Membrane glycoprotein 99.9 7.4E-23 1.6E-27 220.6 4.9 115 1038-1167 316-431 (873)
12 KOG0444 Cytoskeletal regulator 99.8 3.5E-23 7.5E-28 224.0 -5.1 174 523-736 6-183 (1255)
13 KOG4194 Membrane glycoprotein 99.8 1.8E-21 3.9E-26 210.0 6.3 349 525-961 79-448 (873)
14 KOG0444 Cytoskeletal regulator 99.8 3.4E-22 7.4E-27 216.4 -2.4 78 544-623 4-83 (1255)
15 PRK15387 E3 ubiquitin-protein 99.5 9.1E-14 2E-18 166.1 16.3 217 881-1164 242-458 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 1E-13 2.2E-18 165.7 15.5 79 524-612 201-279 (788)
17 KOG4237 Extracellular matrix p 99.4 3.1E-15 6.8E-20 155.3 -4.1 111 514-625 81-195 (498)
18 PRK15370 E3 ubiquitin-protein 99.4 2.4E-12 5.1E-17 155.4 11.7 78 882-968 200-277 (754)
19 PRK15370 E3 ubiquitin-protein 99.3 1.9E-12 4.2E-17 156.2 10.4 83 524-614 178-260 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.3 3.6E-12 7.9E-17 156.3 8.5 106 522-628 543-652 (889)
21 KOG0617 Ras suppressor protein 99.3 9.7E-14 2.1E-18 127.2 -4.3 159 522-745 31-191 (264)
22 KOG0617 Ras suppressor protein 99.3 1.3E-13 2.7E-18 126.4 -5.3 145 516-698 48-193 (264)
23 PRK04841 transcriptional regul 99.2 9.6E-10 2.1E-14 143.0 23.9 272 140-446 33-332 (903)
24 TIGR03015 pepcterm_ATPase puta 99.0 1.6E-08 3.4E-13 110.7 18.8 180 141-324 45-242 (269)
25 PRK00411 cdc6 cell division co 98.9 3.6E-07 7.7E-12 106.1 26.6 293 102-424 34-357 (394)
26 KOG4237 Extracellular matrix p 98.9 5.2E-11 1.1E-15 124.4 -5.2 128 882-1027 68-199 (498)
27 PF05729 NACHT: NACHT domain 98.8 1.4E-08 3.1E-13 102.0 9.4 141 140-286 1-162 (166)
28 cd00116 LRR_RI Leucine-rich re 98.8 6E-10 1.3E-14 125.8 -1.9 88 518-605 17-119 (319)
29 PRK15386 type III secretion pr 98.7 3.9E-08 8.4E-13 107.9 8.7 163 988-1187 48-213 (426)
30 KOG4341 F-box protein containi 98.7 1.3E-10 2.8E-15 122.7 -10.1 68 1096-1166 369-441 (483)
31 cd00116 LRR_RI Leucine-rich re 98.7 2.8E-09 6.1E-14 120.3 -1.1 113 488-605 19-148 (319)
32 KOG4341 F-box protein containi 98.6 4.6E-10 9.9E-15 118.7 -7.5 232 705-966 140-386 (483)
33 PRK00080 ruvB Holliday junctio 98.6 2.3E-06 5E-11 95.8 21.0 247 141-425 53-310 (328)
34 TIGR02928 orc1/cdc6 family rep 98.6 1.3E-05 2.8E-10 92.0 27.6 295 102-425 19-350 (365)
35 KOG0532 Leucine-rich repeat (L 98.6 2.4E-09 5.2E-14 117.4 -4.2 173 520-736 94-270 (722)
36 COG4886 Leucine-rich repeat (L 98.6 3.7E-08 8E-13 114.5 4.7 178 521-740 113-291 (394)
37 PRK15386 type III secretion pr 98.6 1.8E-07 3.9E-12 102.8 9.6 137 1013-1184 49-187 (426)
38 TIGR00635 ruvB Holliday juncti 98.6 5.1E-06 1.1E-10 92.6 21.5 246 142-425 33-289 (305)
39 PF14580 LRR_9: Leucine-rich r 98.5 8.8E-08 1.9E-12 93.9 3.9 78 525-605 20-99 (175)
40 PRK06893 DNA replication initi 98.5 6.2E-07 1.3E-11 94.3 10.5 153 142-324 42-207 (229)
41 COG2909 MalT ATP-dependent tra 98.5 2.1E-06 4.6E-11 100.2 14.8 277 139-447 37-339 (894)
42 PF14580 LRR_9: Leucine-rich r 98.4 1.8E-07 3.9E-12 91.8 4.5 105 522-629 40-151 (175)
43 KOG0532 Leucine-rich repeat (L 98.4 1.4E-08 3E-13 111.7 -4.5 171 523-737 74-245 (722)
44 PF01637 Arch_ATPase: Archaeal 98.3 1.6E-06 3.4E-11 92.9 9.8 173 141-319 22-233 (234)
45 PF13401 AAA_22: AAA domain; P 98.3 1.1E-06 2.4E-11 84.1 7.6 115 140-256 5-125 (131)
46 COG2256 MGS1 ATPase related to 98.3 4E-06 8.7E-11 89.7 12.0 147 144-315 53-207 (436)
47 PF13855 LRR_8: Leucine rich r 98.3 5.7E-07 1.2E-11 72.1 4.5 57 524-580 1-59 (61)
48 KOG3207 Beta-tubulin folding c 98.3 2E-07 4.4E-12 99.6 0.6 157 544-736 118-281 (505)
49 KOG1259 Nischarin, modulator o 98.3 1.8E-07 3.9E-12 94.5 -0.0 151 520-736 210-384 (490)
50 COG4886 Leucine-rich repeat (L 98.2 7.1E-07 1.5E-11 103.8 3.9 159 520-720 135-294 (394)
51 KOG1259 Nischarin, modulator o 98.2 2.6E-07 5.6E-12 93.4 -0.6 101 520-624 280-380 (490)
52 PLN03150 hypothetical protein; 98.2 1.9E-06 4.2E-11 104.6 6.0 92 525-616 419-512 (623)
53 PF13173 AAA_14: AAA domain 98.1 5.5E-06 1.2E-10 78.3 7.2 119 140-279 3-127 (128)
54 cd01128 rho_factor Transcripti 98.1 3.6E-06 7.7E-11 88.4 6.5 86 142-227 19-113 (249)
55 PRK13342 recombination factor 98.1 2.4E-05 5.3E-10 90.3 13.5 152 142-320 39-196 (413)
56 PTZ00112 origin recognition co 98.1 0.00052 1.1E-08 81.5 23.9 182 142-324 784-986 (1164)
57 COG3903 Predicted ATPase [Gene 98.1 4.3E-06 9.4E-11 90.2 6.2 235 138-382 13-258 (414)
58 PRK09376 rho transcription ter 98.1 5.1E-06 1.1E-10 90.4 6.7 84 143-226 173-265 (416)
59 TIGR03420 DnaA_homol_Hda DnaA 98.1 1.4E-05 3.1E-10 84.7 9.9 152 140-321 39-202 (226)
60 KOG2120 SCF ubiquitin ligase, 98.1 1.5E-07 3.3E-12 95.2 -5.3 35 525-559 186-222 (419)
61 KOG3207 Beta-tubulin folding c 98.0 9.1E-07 2E-11 94.8 -0.2 37 1013-1050 169-208 (505)
62 PF13855 LRR_8: Leucine rich r 98.0 3.7E-06 8E-11 67.4 2.8 58 547-605 1-60 (61)
63 PF12799 LRR_4: Leucine Rich r 98.0 6.1E-06 1.3E-10 60.1 3.5 39 525-563 2-40 (44)
64 PLN03150 hypothetical protein; 98.0 9.6E-06 2.1E-10 98.6 6.5 96 516-611 434-532 (623)
65 PRK09087 hypothetical protein; 97.9 9.5E-05 2.1E-09 77.1 12.7 138 141-319 46-194 (226)
66 TIGR02903 spore_lon_C ATP-depe 97.9 0.0016 3.5E-08 78.6 24.9 179 141-323 177-398 (615)
67 PRK14963 DNA polymerase III su 97.9 2.3E-05 4.9E-10 91.5 7.8 167 143-317 40-214 (504)
68 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 58.4 3.4 40 547-587 1-40 (44)
69 PRK04195 replication factor C 97.8 0.0016 3.5E-08 76.9 22.3 221 140-398 40-271 (482)
70 PRK08727 hypothetical protein; 97.8 0.00014 3E-09 76.8 11.4 146 142-317 44-201 (233)
71 PRK05564 DNA polymerase III su 97.8 0.00036 7.8E-09 77.6 15.1 151 143-318 30-188 (313)
72 TIGR00767 rho transcription te 97.8 8.1E-05 1.8E-09 81.8 8.7 85 143-227 172-265 (415)
73 PRK08084 DNA replication initi 97.7 0.0002 4.4E-09 75.6 11.4 151 141-321 47-210 (235)
74 PRK14961 DNA polymerase III su 97.7 0.00046 9.9E-09 78.2 14.9 98 216-317 118-217 (363)
75 PRK14949 DNA polymerase III su 97.7 0.00042 9E-09 83.7 14.9 100 215-318 117-218 (944)
76 KOG1909 Ran GTPase-activating 97.7 2.6E-06 5.7E-11 88.9 -3.5 197 518-736 24-251 (382)
77 TIGR02880 cbbX_cfxQ probable R 97.7 0.0008 1.7E-08 73.1 15.3 132 141-288 60-209 (284)
78 PF05621 TniB: Bacterial TniB 97.7 0.0016 3.4E-08 68.9 16.7 176 142-318 64-259 (302)
79 PF00308 Bac_DnaA: Bacterial d 97.7 0.0002 4.3E-09 74.5 9.9 157 142-320 37-208 (219)
80 PRK06645 DNA polymerase III su 97.7 0.00063 1.4E-08 79.2 14.9 99 215-317 126-226 (507)
81 cd00009 AAA The AAA+ (ATPases 97.7 0.00014 3E-09 71.2 8.3 106 140-258 20-131 (151)
82 PRK14087 dnaA chromosomal repl 97.7 0.00036 7.9E-09 80.8 12.7 166 141-322 143-321 (450)
83 PLN03025 replication factor C 97.6 0.00038 8.2E-09 77.6 12.3 157 143-317 38-197 (319)
84 COG3899 Predicted ATPase [Gene 97.6 0.0015 3.2E-08 81.9 18.6 212 215-445 152-385 (849)
85 PRK07003 DNA polymerase III su 97.6 0.0014 3E-08 77.7 17.0 103 216-322 118-223 (830)
86 TIGR00678 holB DNA polymerase 97.6 0.00062 1.3E-08 69.5 12.6 90 216-315 95-186 (188)
87 TIGR01242 26Sp45 26S proteasom 97.6 0.00085 1.9E-08 76.4 15.0 151 140-314 157-328 (364)
88 PRK14960 DNA polymerase III su 97.6 0.00072 1.6E-08 79.2 14.3 100 215-318 116-217 (702)
89 PRK05642 DNA replication initi 97.6 0.00031 6.7E-09 74.1 10.5 154 141-324 47-212 (234)
90 KOG2028 ATPase related to the 97.6 0.00082 1.8E-08 70.7 13.1 122 144-286 167-293 (554)
91 CHL00181 cbbX CbbX; Provisiona 97.6 0.0015 3.3E-08 70.8 15.9 132 142-289 62-211 (287)
92 PRK14957 DNA polymerase III su 97.6 0.00069 1.5E-08 79.3 13.7 104 215-322 117-223 (546)
93 PRK12402 replication factor C 97.6 0.00088 1.9E-08 76.1 14.5 99 216-318 124-224 (337)
94 PRK08903 DnaA regulatory inact 97.6 0.00042 9.2E-09 73.3 11.0 151 140-324 43-203 (227)
95 KOG1909 Ran GTPase-activating 97.6 7.1E-06 1.5E-10 85.8 -2.6 238 542-839 25-309 (382)
96 KOG2120 SCF ubiquitin ligase, 97.6 4.7E-06 1E-10 84.7 -3.8 162 988-1161 206-373 (419)
97 KOG0531 Protein phosphatase 1, 97.6 2E-05 4.4E-10 91.5 0.6 100 520-623 91-191 (414)
98 PRK13341 recombination factor 97.5 0.00043 9.4E-09 84.2 11.4 146 143-315 56-212 (725)
99 PRK14956 DNA polymerase III su 97.5 0.00059 1.3E-08 77.6 11.6 98 215-316 119-218 (484)
100 PRK06620 hypothetical protein; 97.5 0.00074 1.6E-08 69.8 11.2 135 141-318 46-187 (214)
101 TIGR02881 spore_V_K stage V sp 97.5 0.00086 1.9E-08 72.4 12.1 131 142-288 45-192 (261)
102 PRK12323 DNA polymerase III su 97.5 0.0016 3.4E-08 76.2 14.2 101 215-319 122-224 (700)
103 PF05496 RuvB_N: Holliday junc 97.4 0.0025 5.3E-08 64.3 13.5 72 249-324 152-225 (233)
104 KOG4579 Leucine-rich repeat (L 97.4 3.4E-05 7.4E-10 69.3 0.3 91 520-612 49-140 (177)
105 KOG4579 Leucine-rich repeat (L 97.4 1.1E-05 2.4E-10 72.4 -2.8 98 525-624 28-129 (177)
106 PRK07994 DNA polymerase III su 97.4 0.0015 3.1E-08 77.9 13.6 101 215-319 117-219 (647)
107 PRK07471 DNA polymerase III su 97.4 0.00061 1.3E-08 76.4 9.4 97 216-320 140-238 (365)
108 PRK14962 DNA polymerase III su 97.4 0.0014 2.9E-08 76.2 12.5 105 216-324 116-223 (472)
109 COG2255 RuvB Holliday junction 97.4 0.0034 7.4E-08 64.5 13.6 155 250-425 155-311 (332)
110 PRK14088 dnaA chromosomal repl 97.4 0.0012 2.7E-08 76.4 12.1 158 142-318 133-303 (440)
111 COG1474 CDC6 Cdc6-related prot 97.3 0.0037 8E-08 70.0 15.1 178 142-319 45-237 (366)
112 PRK00440 rfc replication facto 97.3 0.0032 6.9E-08 70.9 14.9 156 142-317 41-200 (319)
113 TIGR00362 DnaA chromosomal rep 97.3 0.003 6.5E-08 73.2 14.9 157 142-318 139-308 (405)
114 KOG0531 Protein phosphatase 1, 97.3 3.9E-05 8.5E-10 89.1 -0.7 99 522-624 70-168 (414)
115 PRK14955 DNA polymerase III su 97.3 0.0012 2.7E-08 75.7 11.1 170 143-317 42-225 (397)
116 PRK03992 proteasome-activating 97.3 0.004 8.8E-08 71.1 15.1 161 102-288 135-316 (389)
117 PRK09112 DNA polymerase III su 97.3 0.0035 7.7E-08 69.9 14.2 99 216-320 140-240 (351)
118 PRK07940 DNA polymerase III su 97.3 0.0033 7.2E-08 71.1 13.9 96 216-320 116-213 (394)
119 TIGR03689 pup_AAA proteasome A 97.3 0.0047 1E-07 71.6 15.1 166 102-287 186-378 (512)
120 PRK14964 DNA polymerase III su 97.3 0.0027 5.9E-08 73.3 13.1 98 216-317 115-214 (491)
121 PRK14959 DNA polymerase III su 97.2 0.0039 8.4E-08 73.6 14.4 106 215-324 117-225 (624)
122 PRK05896 DNA polymerase III su 97.2 0.0031 6.7E-08 74.0 13.5 102 217-322 119-223 (605)
123 PRK14951 DNA polymerase III su 97.2 0.003 6.5E-08 75.2 13.5 100 216-319 123-224 (618)
124 PF14516 AAA_35: AAA-like doma 97.2 0.018 3.9E-07 64.3 18.8 177 142-327 34-246 (331)
125 PRK00149 dnaA chromosomal repl 97.2 0.0031 6.6E-08 74.1 13.2 157 142-318 151-320 (450)
126 PRK14086 dnaA chromosomal repl 97.2 0.0047 1E-07 72.6 14.3 155 143-317 318-485 (617)
127 PRK08691 DNA polymerase III su 97.2 0.0041 9E-08 73.8 13.9 99 216-318 118-218 (709)
128 PRK12422 chromosomal replicati 97.2 0.0018 3.9E-08 74.8 10.5 152 141-313 143-306 (445)
129 KOG1947 Leucine rich repeat pr 97.2 4.3E-05 9.4E-10 92.0 -2.9 113 903-1029 187-308 (482)
130 PRK14958 DNA polymerase III su 97.2 0.0041 8.8E-08 73.2 13.3 99 216-318 118-218 (509)
131 KOG1859 Leucine-rich repeat pr 97.1 1E-05 2.2E-10 92.1 -8.0 101 1074-1185 187-290 (1096)
132 PRK14969 DNA polymerase III su 97.1 0.0063 1.4E-07 72.1 14.7 101 216-320 118-221 (527)
133 PF00004 AAA: ATPase family as 97.1 0.00082 1.8E-08 64.2 6.0 20 144-163 3-22 (132)
134 TIGR02397 dnaX_nterm DNA polym 97.1 0.0074 1.6E-07 69.0 14.7 101 216-320 116-218 (355)
135 PRK09111 DNA polymerase III su 97.1 0.0062 1.3E-07 72.7 14.1 100 216-319 131-232 (598)
136 PRK14954 DNA polymerase III su 97.1 0.0058 1.3E-07 73.0 13.8 174 143-320 42-229 (620)
137 COG1222 RPT1 ATP-dependent 26S 97.0 0.0079 1.7E-07 64.0 12.6 189 102-325 155-372 (406)
138 KOG3665 ZYG-1-like serine/thre 97.0 0.00045 9.8E-09 83.7 4.0 108 489-605 145-261 (699)
139 COG0593 DnaA ATPase involved i 97.0 0.0049 1.1E-07 68.6 11.3 159 141-317 115-287 (408)
140 PRK05707 DNA polymerase III su 97.0 0.014 3E-07 64.6 14.8 97 216-320 105-203 (328)
141 PRK14950 DNA polymerase III su 97.0 0.0045 9.8E-08 74.8 11.9 167 143-319 42-220 (585)
142 KOG1947 Leucine rich repeat pr 97.0 7.1E-05 1.5E-09 90.1 -3.7 113 879-1005 186-308 (482)
143 PRK08116 hypothetical protein; 96.9 0.0017 3.8E-08 69.7 7.2 101 142-256 117-220 (268)
144 PTZ00454 26S protease regulato 96.9 0.0099 2.1E-07 67.6 13.2 130 139-287 179-329 (398)
145 KOG3665 ZYG-1-like serine/thre 96.9 0.00067 1.4E-08 82.2 4.1 78 524-603 122-204 (699)
146 smart00382 AAA ATPases associa 96.9 0.0038 8.3E-08 60.5 8.9 86 141-229 4-90 (148)
147 PRK08451 DNA polymerase III su 96.9 0.017 3.8E-07 67.4 15.4 100 216-319 116-217 (535)
148 KOG0989 Replication factor C, 96.9 0.0035 7.6E-08 65.1 8.5 157 143-314 61-224 (346)
149 PRK07133 DNA polymerase III su 96.9 0.015 3.2E-07 70.1 15.0 102 216-321 117-221 (725)
150 PRK08118 topology modulation p 96.8 0.00045 9.8E-09 68.4 1.6 32 142-173 4-37 (167)
151 KOG1859 Leucine-rich repeat pr 96.8 0.00017 3.6E-09 82.5 -1.8 79 522-604 185-264 (1096)
152 PRK11331 5-methylcytosine-spec 96.8 0.0021 4.6E-08 72.2 6.9 88 140-231 195-286 (459)
153 PRK14952 DNA polymerase III su 96.8 0.02 4.4E-07 68.0 15.2 105 216-324 117-224 (584)
154 PTZ00361 26 proteosome regulat 96.8 0.0075 1.6E-07 69.0 11.0 158 102-288 187-368 (438)
155 PRK07764 DNA polymerase III su 96.8 0.017 3.7E-07 71.5 14.7 99 215-317 118-218 (824)
156 PRK14970 DNA polymerase III su 96.7 0.019 4E-07 65.8 14.0 97 216-316 107-205 (367)
157 PRK14953 DNA polymerase III su 96.7 0.026 5.7E-07 66.0 15.0 101 215-319 117-219 (486)
158 PRK14948 DNA polymerase III su 96.7 0.01 2.3E-07 71.4 11.8 170 143-320 42-222 (620)
159 COG3267 ExeA Type II secretory 96.7 0.06 1.3E-06 55.1 15.1 176 139-321 51-246 (269)
160 PF13191 AAA_16: AAA ATPase do 96.7 0.0021 4.6E-08 65.6 5.0 28 139-166 24-51 (185)
161 PRK06305 DNA polymerase III su 96.7 0.031 6.8E-07 65.0 15.0 102 216-321 120-224 (451)
162 CHL00195 ycf46 Ycf46; Provisio 96.6 0.023 5E-07 66.1 13.7 131 140-289 260-407 (489)
163 PRK07261 topology modulation p 96.6 0.005 1.1E-07 61.4 7.2 63 142-227 3-67 (171)
164 TIGR02640 gas_vesic_GvpN gas v 96.6 0.061 1.3E-06 58.0 16.1 41 141-185 23-63 (262)
165 PF05673 DUF815: Protein of un 96.6 0.046 9.9E-07 56.2 14.0 95 142-260 55-154 (249)
166 KOG2982 Uncharacterized conser 96.6 0.00057 1.2E-08 70.0 0.3 81 521-605 68-157 (418)
167 PHA02544 44 clamp loader, smal 96.6 0.013 2.9E-07 65.5 11.0 122 143-285 47-171 (316)
168 COG5238 RNA1 Ran GTPase-activa 96.5 0.00036 7.9E-09 70.4 -1.8 194 521-736 27-252 (388)
169 PF04665 Pox_A32: Poxvirus A32 96.5 0.0037 7.9E-08 64.7 5.2 34 142-176 16-49 (241)
170 KOG0728 26S proteasome regulat 96.5 0.046 1E-06 54.7 12.5 156 102-287 151-331 (404)
171 KOG2543 Origin recognition com 96.5 0.044 9.5E-07 59.0 13.1 136 142-286 33-192 (438)
172 PTZ00202 tuzin; Provisional 96.5 0.018 3.9E-07 63.7 10.5 137 140-286 287-433 (550)
173 KOG1644 U2-associated snRNP A' 96.4 0.003 6.5E-08 61.5 4.0 100 524-626 42-148 (233)
174 PRK06526 transposase; Provisio 96.4 0.0039 8.4E-08 66.2 5.0 99 141-257 100-201 (254)
175 PRK12608 transcription termina 96.4 0.013 2.8E-07 64.5 9.0 84 143-226 137-229 (380)
176 KOG0733 Nuclear AAA ATPase (VC 96.3 0.097 2.1E-06 59.8 15.5 195 102-324 194-410 (802)
177 PRK14971 DNA polymerase III su 96.3 0.056 1.2E-06 65.3 14.8 98 216-317 120-219 (614)
178 PRK06647 DNA polymerase III su 96.3 0.083 1.8E-06 63.0 15.9 100 215-318 117-218 (563)
179 TIGR01241 FtsH_fam ATP-depende 96.2 0.097 2.1E-06 62.3 16.1 150 140-313 89-259 (495)
180 CHL00176 ftsH cell division pr 96.2 0.085 1.8E-06 63.8 15.3 149 140-312 217-386 (638)
181 PRK08769 DNA polymerase III su 96.2 0.082 1.8E-06 58.0 13.8 96 216-321 112-209 (319)
182 PRK06871 DNA polymerase III su 96.1 0.11 2.4E-06 57.1 14.6 93 216-317 106-200 (325)
183 PRK08181 transposase; Validate 96.1 0.0092 2E-07 63.7 6.1 98 142-257 109-209 (269)
184 PRK07399 DNA polymerase III su 96.1 0.089 1.9E-06 58.0 13.7 97 215-319 122-220 (314)
185 PRK06921 hypothetical protein; 96.1 0.014 3.1E-07 62.6 7.3 36 141-176 119-154 (266)
186 KOG2227 Pre-initiation complex 96.0 0.09 1.9E-06 58.3 13.1 181 144-324 180-376 (529)
187 PRK09183 transposase/IS protei 96.0 0.0084 1.8E-07 64.1 5.2 99 141-256 104-205 (259)
188 PF00560 LRR_1: Leucine Rich R 96.0 0.0032 6.9E-08 38.0 1.2 19 549-567 2-20 (22)
189 PRK04132 replication factor C 96.0 0.12 2.6E-06 63.8 15.6 156 144-318 569-729 (846)
190 KOG0741 AAA+-type ATPase [Post 96.0 0.078 1.7E-06 59.4 12.4 142 143-310 542-704 (744)
191 PRK10536 hypothetical protein; 96.0 0.017 3.7E-07 60.0 7.0 43 212-257 168-213 (262)
192 TIGR02639 ClpA ATP-dependent C 95.9 0.08 1.7E-06 66.2 14.2 132 141-287 205-358 (731)
193 PRK08939 primosomal protein Dn 95.9 0.013 2.8E-07 64.2 6.1 98 141-255 158-259 (306)
194 TIGR00602 rad24 checkpoint pro 95.9 0.037 8E-07 66.3 10.3 23 140-162 111-133 (637)
195 PRK06090 DNA polymerase III su 95.9 0.13 2.8E-06 56.4 13.6 93 216-320 107-201 (319)
196 PRK14965 DNA polymerase III su 95.9 0.08 1.7E-06 63.8 13.1 103 216-322 118-223 (576)
197 TIGR03345 VI_ClpV1 type VI sec 95.8 0.059 1.3E-06 67.8 12.0 131 142-287 211-363 (852)
198 PF07728 AAA_5: AAA domain (dy 95.8 0.0029 6.2E-08 61.0 0.4 86 143-241 3-89 (139)
199 PF01695 IstB_IS21: IstB-like 95.8 0.0065 1.4E-07 60.8 2.8 97 142-256 50-149 (178)
200 PF08423 Rad51: Rad51; InterP 95.7 0.032 7E-07 59.5 8.1 51 143-194 42-97 (256)
201 COG1373 Predicted ATPase (AAA+ 95.7 0.067 1.5E-06 61.2 11.2 117 141-282 39-162 (398)
202 KOG2739 Leucine-rich acidic nu 95.7 0.005 1.1E-07 62.9 1.8 79 524-605 43-127 (260)
203 KOG2982 Uncharacterized conser 95.7 0.0029 6.2E-08 65.1 0.0 79 991-1070 70-153 (418)
204 KOG0730 AAA+-type ATPase [Post 95.7 0.15 3.1E-06 59.3 13.3 24 139-162 468-491 (693)
205 PRK06964 DNA polymerase III su 95.6 0.12 2.7E-06 57.1 12.4 93 216-320 131-225 (342)
206 CHL00095 clpC Clp protease ATP 95.6 0.098 2.1E-06 66.3 13.2 132 141-286 202-353 (821)
207 PRK05563 DNA polymerase III su 95.6 0.22 4.9E-06 59.7 15.3 100 215-318 117-218 (559)
208 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.029 6.2E-07 54.2 6.1 116 142-258 5-139 (159)
209 KOG2123 Uncharacterized conser 95.4 0.0012 2.7E-08 67.0 -3.6 103 523-628 18-127 (388)
210 PRK07952 DNA replication prote 95.4 0.026 5.7E-07 59.3 5.9 100 142-256 102-204 (244)
211 PF02562 PhoH: PhoH-like prote 95.4 0.016 3.4E-07 58.7 4.1 111 142-256 22-155 (205)
212 PRK04296 thymidine kinase; Pro 95.3 0.018 3.9E-07 58.6 4.4 111 143-259 6-118 (190)
213 PRK12377 putative replication 95.3 0.023 5.1E-07 59.8 5.2 99 142-256 104-205 (248)
214 PF13177 DNA_pol3_delta2: DNA 95.3 0.13 2.8E-06 50.7 10.2 59 216-274 101-161 (162)
215 cd01133 F1-ATPase_beta F1 ATP 95.3 0.045 9.7E-07 58.0 7.2 84 142-226 72-172 (274)
216 KOG0731 AAA+-type ATPase conta 95.3 0.49 1.1E-05 57.0 16.3 152 139-317 344-521 (774)
217 PRK07993 DNA polymerase III su 95.2 0.08 1.7E-06 58.9 9.4 94 216-318 107-202 (334)
218 KOG0744 AAA+-type ATPase [Post 95.2 0.29 6.3E-06 51.6 12.5 81 137-227 175-260 (423)
219 PRK08058 DNA polymerase III su 95.2 0.18 3.9E-06 56.4 12.2 70 216-285 109-180 (329)
220 PF00560 LRR_1: Leucine Rich R 95.2 0.0098 2.1E-07 35.9 1.2 22 525-546 1-22 (22)
221 COG1484 DnaC DNA replication p 95.2 0.04 8.6E-07 58.7 6.5 77 142-235 108-185 (254)
222 PRK11889 flhF flagellar biosyn 95.1 0.079 1.7E-06 58.6 8.7 88 139-227 241-330 (436)
223 cd01123 Rad51_DMC1_radA Rad51_ 95.1 0.065 1.4E-06 57.1 7.9 52 140-192 20-76 (235)
224 PRK06835 DNA replication prote 95.0 0.026 5.6E-07 62.3 4.7 102 140-256 184-288 (329)
225 PF00448 SRP54: SRP54-type pro 95.0 0.015 3.2E-07 59.2 2.5 56 140-196 2-58 (196)
226 TIGR02639 ClpA ATP-dependent C 94.9 0.14 3.1E-06 63.9 11.5 91 143-243 488-579 (731)
227 COG0542 clpA ATP-binding subun 94.9 0.075 1.6E-06 64.1 8.2 91 144-244 526-620 (786)
228 KOG0743 AAA+-type ATPase [Post 94.8 0.81 1.8E-05 51.2 15.3 47 109-162 212-258 (457)
229 TIGR02237 recomb_radB DNA repa 94.8 0.061 1.3E-06 56.0 6.7 45 141-187 14-58 (209)
230 KOG0473 Leucine-rich repeat pr 94.7 0.0016 3.4E-08 64.4 -5.0 85 520-605 38-122 (326)
231 PRK13695 putative NTPase; Prov 94.7 0.013 2.9E-07 58.8 1.4 33 142-174 3-35 (174)
232 PF13207 AAA_17: AAA domain; P 94.7 0.016 3.4E-07 54.2 1.7 21 142-162 2-22 (121)
233 cd01120 RecA-like_NTPases RecA 94.6 0.092 2E-06 52.1 7.3 37 143-180 3-39 (165)
234 TIGR03346 chaperone_ClpB ATP-d 94.6 0.57 1.2E-05 59.7 15.8 133 141-287 196-349 (852)
235 KOG0733 Nuclear AAA ATPase (VC 94.6 0.42 9.1E-06 54.9 12.7 151 142-313 548-717 (802)
236 cd00983 recA RecA is a bacter 94.6 0.062 1.3E-06 58.7 6.1 81 140-226 56-142 (325)
237 PRK05541 adenylylsulfate kinas 94.6 0.064 1.4E-06 54.0 5.9 34 140-174 8-41 (176)
238 KOG2123 Uncharacterized conser 94.6 0.0061 1.3E-07 62.1 -1.4 81 519-600 36-123 (388)
239 PRK09361 radB DNA repair and r 94.5 0.078 1.7E-06 55.9 6.7 43 141-185 25-67 (225)
240 PF14532 Sigma54_activ_2: Sigm 94.5 0.027 5.9E-07 54.0 2.9 102 106-257 6-110 (138)
241 TIGR01243 CDC48 AAA family ATP 94.4 0.38 8.1E-06 60.5 13.6 150 141-314 489-657 (733)
242 KOG1644 U2-associated snRNP A' 94.4 0.035 7.5E-07 54.4 3.4 87 518-605 58-151 (233)
243 KOG2739 Leucine-rich acidic nu 94.4 0.027 5.9E-07 57.7 2.6 60 545-605 41-102 (260)
244 PRK11034 clpA ATP-dependent Cl 94.4 0.21 4.5E-06 61.8 10.7 133 141-287 209-362 (758)
245 TIGR02238 recomb_DMC1 meiotic 94.3 0.091 2E-06 57.7 6.9 53 142-195 99-156 (313)
246 COG1223 Predicted ATPase (AAA+ 94.3 0.31 6.7E-06 49.7 9.8 128 137-287 149-297 (368)
247 cd03247 ABCC_cytochrome_bd The 94.3 0.24 5.2E-06 49.9 9.4 124 141-271 30-169 (178)
248 PRK08699 DNA polymerase III su 94.3 0.17 3.6E-06 56.1 8.8 70 217-286 113-184 (325)
249 COG1121 ZnuC ABC-type Mn/Zn tr 94.3 0.26 5.5E-06 51.4 9.5 121 140-262 31-204 (254)
250 PLN03187 meiotic recombination 94.2 0.15 3.3E-06 56.4 8.4 52 143-195 130-186 (344)
251 TIGR02012 tigrfam_recA protein 94.2 0.081 1.7E-06 57.8 6.1 82 140-227 56-143 (321)
252 TIGR03499 FlhF flagellar biosy 94.2 0.098 2.1E-06 56.9 6.8 86 139-226 194-281 (282)
253 COG2812 DnaX DNA polymerase II 94.2 0.19 4.2E-06 58.2 9.3 96 216-315 118-215 (515)
254 TIGR03346 chaperone_ClpB ATP-d 94.2 0.12 2.7E-06 65.6 8.5 94 142-244 598-694 (852)
255 PF13306 LRR_5: Leucine rich r 94.1 0.095 2.1E-06 49.5 5.8 116 1040-1188 13-129 (129)
256 PRK10865 protein disaggregatio 94.1 0.12 2.5E-06 65.5 8.1 95 142-243 601-696 (857)
257 COG1618 Predicted nucleotide k 94.1 0.033 7.1E-07 52.4 2.4 29 142-170 8-36 (179)
258 PRK09354 recA recombinase A; P 94.1 0.093 2E-06 57.8 6.2 82 140-227 61-148 (349)
259 cd01393 recA_like RecA is a b 94.1 0.15 3.3E-06 53.8 7.9 86 140-227 20-124 (226)
260 COG0470 HolB ATPase involved i 94.0 0.15 3.2E-06 57.5 8.2 58 216-273 108-167 (325)
261 COG2884 FtsE Predicted ATPase 94.0 0.29 6.3E-06 47.7 8.5 55 208-264 146-204 (223)
262 PHA00729 NTP-binding motif con 94.0 0.056 1.2E-06 55.4 4.1 21 142-162 20-40 (226)
263 cd03238 ABC_UvrA The excision 94.0 0.17 3.8E-06 50.4 7.4 120 140-271 22-161 (176)
264 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.9 0.28 6.1E-06 47.3 8.7 103 140-261 27-131 (144)
265 TIGR01243 CDC48 AAA family ATP 93.9 0.56 1.2E-05 59.0 13.6 151 140-314 213-381 (733)
266 COG0563 Adk Adenylate kinase a 93.8 0.07 1.5E-06 53.2 4.4 24 142-165 3-26 (178)
267 PF00485 PRK: Phosphoribulokin 93.8 0.14 3E-06 52.5 6.7 79 142-221 2-87 (194)
268 cd01394 radB RadB. The archaea 93.8 0.13 2.9E-06 53.9 6.6 41 140-181 20-60 (218)
269 PRK14722 flhF flagellar biosyn 93.7 0.15 3.4E-06 56.9 7.3 87 139-227 137-225 (374)
270 cd03214 ABC_Iron-Siderophores_ 93.7 0.39 8.4E-06 48.5 9.7 117 141-260 27-161 (180)
271 CHL00095 clpC Clp protease ATP 93.7 0.15 3.3E-06 64.6 8.1 92 143-243 543-637 (821)
272 KOG2035 Replication factor C, 93.6 0.19 4.2E-06 51.7 7.0 138 220-361 130-282 (351)
273 cd03223 ABCD_peroxisomal_ALDP 93.5 0.44 9.5E-06 47.3 9.5 122 141-271 29-160 (166)
274 cd01125 repA Hexameric Replica 93.5 0.38 8.3E-06 51.2 9.7 19 143-161 5-23 (239)
275 cd02025 PanK Pantothenate kina 93.5 0.23 5E-06 51.7 7.7 21 142-162 2-22 (220)
276 COG0468 RecA RecA/RadA recombi 93.5 0.19 4.2E-06 53.5 7.2 85 140-226 61-150 (279)
277 cd03228 ABCC_MRP_Like The MRP 93.5 0.3 6.4E-06 48.9 8.2 123 141-271 30-167 (171)
278 PRK00625 shikimate kinase; Pro 93.4 0.2 4.4E-06 49.8 6.7 21 142-162 3-23 (173)
279 PRK00771 signal recognition pa 93.4 0.21 4.5E-06 57.4 7.7 57 138-195 94-151 (437)
280 TIGR00763 lon ATP-dependent pr 93.4 1 2.2E-05 56.9 14.5 23 141-163 349-371 (775)
281 KOG1969 DNA replication checkp 93.4 0.2 4.4E-06 58.7 7.4 80 139-237 326-407 (877)
282 PF03029 ATP_bind_1: Conserved 93.4 0.04 8.7E-07 58.0 1.8 21 144-164 1-21 (238)
283 cd03115 SRP The signal recogni 93.4 0.18 3.8E-06 50.6 6.5 21 142-162 3-23 (173)
284 KOG0735 AAA+-type ATPase [Post 93.3 0.16 3.5E-06 59.1 6.4 68 142-227 434-504 (952)
285 PRK04301 radA DNA repair and r 93.2 0.27 5.9E-06 54.7 8.3 53 141-194 104-161 (317)
286 PRK14974 cell division protein 93.2 0.26 5.7E-06 54.5 8.0 88 139-228 140-233 (336)
287 TIGR03345 VI_ClpV1 type VI sec 93.2 0.15 3.2E-06 64.4 6.7 94 142-244 599-695 (852)
288 PRK08233 hypothetical protein; 93.2 0.17 3.7E-06 51.2 6.2 24 140-163 4-27 (182)
289 KOG0734 AAA+-type ATPase conta 93.2 1.6 3.6E-05 49.4 13.8 125 140-287 338-484 (752)
290 TIGR01359 UMP_CMP_kin_fam UMP- 93.2 0.22 4.8E-06 50.5 7.0 21 142-162 2-22 (183)
291 PHA02244 ATPase-like protein 93.2 0.21 4.5E-06 55.1 7.0 21 142-162 122-142 (383)
292 PRK13531 regulatory ATPase Rav 93.2 0.16 3.4E-06 58.2 6.1 22 141-162 41-62 (498)
293 PRK06217 hypothetical protein; 93.1 0.22 4.9E-06 50.4 6.8 32 142-173 4-37 (183)
294 PRK12724 flagellar biosynthesi 93.1 0.19 4E-06 56.6 6.6 23 140-162 224-246 (432)
295 PTZ00088 adenylate kinase 1; P 93.1 0.072 1.6E-06 55.6 3.2 21 142-162 9-29 (229)
296 KOG1514 Origin recognition com 93.1 1.2 2.6E-05 52.4 13.1 107 141-254 424-546 (767)
297 KOG0729 26S proteasome regulat 93.1 0.81 1.7E-05 46.7 10.2 23 140-162 212-234 (435)
298 PF13238 AAA_18: AAA domain; P 93.0 0.054 1.2E-06 51.2 2.1 20 143-162 2-21 (129)
299 PLN00020 ribulose bisphosphate 93.0 0.12 2.5E-06 56.5 4.7 27 138-164 147-173 (413)
300 PRK12726 flagellar biosynthesi 93.0 0.22 4.9E-06 55.0 6.9 90 138-228 205-296 (407)
301 PF13504 LRR_7: Leucine rich r 93.0 0.056 1.2E-06 30.1 1.2 13 549-561 3-15 (17)
302 COG4608 AppF ABC-type oligopep 93.0 0.34 7.4E-06 50.6 7.8 142 140-284 40-199 (268)
303 KOG2228 Origin recognition com 93.0 0.67 1.5E-05 49.5 9.9 144 142-287 52-219 (408)
304 PRK10865 protein disaggregatio 93.0 0.74 1.6E-05 58.4 12.4 131 142-287 202-354 (857)
305 cd03222 ABC_RNaseL_inhibitor T 93.0 0.42 9.1E-06 47.7 8.3 101 141-262 27-137 (177)
306 PRK12727 flagellar biosynthesi 92.9 0.23 5E-06 57.4 7.1 87 139-227 350-438 (559)
307 TIGR00708 cobA cob(I)alamin ad 92.9 0.32 7E-06 47.7 7.1 118 141-258 7-141 (173)
308 COG1136 SalX ABC-type antimicr 92.9 1.1 2.4E-05 46.0 11.2 61 209-272 152-216 (226)
309 PRK12723 flagellar biosynthesi 92.9 0.43 9.3E-06 53.9 9.1 88 138-228 173-265 (388)
310 COG1102 Cmk Cytidylate kinase 92.9 0.18 3.9E-06 47.6 5.0 44 141-196 2-45 (179)
311 PRK10787 DNA-binding ATP-depen 92.8 0.9 1.9E-05 56.8 12.7 22 141-162 351-372 (784)
312 COG2842 Uncharacterized ATPase 92.8 0.9 2E-05 48.0 10.6 130 141-290 96-226 (297)
313 cd01878 HflX HflX subfamily. 92.8 0.15 3.2E-06 52.9 5.0 58 100-163 8-65 (204)
314 PRK05703 flhF flagellar biosyn 92.7 0.42 9.2E-06 55.1 9.0 86 139-226 221-308 (424)
315 cd02027 APSK Adenosine 5'-phos 92.7 0.22 4.7E-06 48.4 5.8 21 142-162 2-22 (149)
316 PF00158 Sigma54_activat: Sigm 92.7 0.48 1E-05 46.9 8.2 23 140-162 23-45 (168)
317 cd01131 PilT Pilus retraction 92.6 0.24 5.2E-06 50.8 6.2 108 142-260 4-112 (198)
318 PLN03186 DNA repair protein RA 92.6 0.34 7.4E-06 53.8 7.8 53 142-195 126-183 (342)
319 KOG1532 GTPase XAB1, interacts 92.6 0.35 7.5E-06 49.7 7.0 98 141-248 21-137 (366)
320 COG2607 Predicted ATPase (AAA+ 92.6 0.31 6.8E-06 49.3 6.6 92 142-257 88-183 (287)
321 PF13306 LRR_5: Leucine rich r 92.6 0.44 9.6E-06 44.9 7.7 118 1012-1153 8-128 (129)
322 TIGR03600 phage_DnaB phage rep 92.6 5.2 0.00011 46.7 18.0 52 141-194 196-247 (421)
323 TIGR02239 recomb_RAD51 DNA rep 92.5 0.29 6.2E-06 54.1 7.0 53 141-194 98-155 (316)
324 PRK10867 signal recognition pa 92.5 0.23 5E-06 56.9 6.5 23 139-161 100-122 (433)
325 PRK08760 replicative DNA helic 92.5 3.9 8.5E-05 48.1 16.8 50 141-193 231-281 (476)
326 PF13604 AAA_30: AAA domain; P 92.5 0.13 2.8E-06 52.6 4.0 102 140-255 19-129 (196)
327 TIGR01650 PD_CobS cobaltochela 92.4 1.2 2.7E-05 48.6 11.5 23 140-162 65-87 (327)
328 COG0572 Udk Uridine kinase [Nu 92.4 0.17 3.7E-06 51.2 4.7 76 140-218 9-85 (218)
329 KOG3347 Predicted nucleotide k 92.4 0.17 3.7E-06 46.9 4.2 66 142-216 10-75 (176)
330 KOG0473 Leucine-rich repeat pr 92.3 0.0089 1.9E-07 59.3 -4.3 87 536-624 30-117 (326)
331 TIGR02858 spore_III_AA stage I 92.3 0.35 7.7E-06 51.8 7.2 108 142-261 114-233 (270)
332 TIGR00959 ffh signal recogniti 92.3 0.28 6.1E-06 56.2 6.8 87 139-226 99-191 (428)
333 COG0464 SpoVK ATPases of the A 92.3 2.6 5.6E-05 50.5 15.4 129 141-288 278-424 (494)
334 PRK10733 hflB ATP-dependent me 92.3 1.1 2.3E-05 55.2 12.2 130 140-288 186-336 (644)
335 TIGR03575 selen_PSTK_euk L-ser 92.2 0.36 7.8E-06 53.3 7.3 21 143-163 3-23 (340)
336 TIGR02236 recomb_radA DNA repa 92.2 0.45 9.8E-06 52.9 8.3 53 141-194 97-154 (310)
337 PRK08506 replicative DNA helic 92.2 6 0.00013 46.7 17.8 51 141-194 194-244 (472)
338 cd02019 NK Nucleoside/nucleoti 92.1 0.1 2.2E-06 42.7 2.3 21 142-162 2-22 (69)
339 PRK06002 fliI flagellum-specif 92.1 0.53 1.1E-05 53.8 8.6 83 142-226 168-263 (450)
340 PRK06067 flagellar accessory p 92.0 0.41 8.8E-06 50.8 7.4 84 140-227 26-130 (234)
341 PF13504 LRR_7: Leucine rich r 92.0 0.1 2.2E-06 29.1 1.4 17 524-540 1-17 (17)
342 COG1428 Deoxynucleoside kinase 92.0 0.081 1.7E-06 52.7 1.8 25 141-165 6-30 (216)
343 cd03216 ABC_Carb_Monos_I This 92.0 0.49 1.1E-05 46.8 7.4 114 141-261 28-146 (163)
344 cd03283 ABC_MutS-like MutS-lik 92.0 0.11 2.5E-06 53.1 2.9 22 140-161 26-47 (199)
345 COG0396 sufC Cysteine desulfur 91.9 1 2.2E-05 45.6 9.2 60 210-269 155-216 (251)
346 PF07693 KAP_NTPase: KAP famil 91.9 1.1 2.4E-05 50.4 11.0 29 138-166 19-47 (325)
347 PF12775 AAA_7: P-loop contain 91.9 0.076 1.6E-06 57.2 1.5 79 141-230 35-113 (272)
348 PF00006 ATP-synt_ab: ATP synt 91.8 0.31 6.6E-06 50.2 5.8 82 142-226 18-114 (215)
349 TIGR02902 spore_lonB ATP-depen 91.8 0.4 8.6E-06 57.3 7.6 21 141-161 88-108 (531)
350 PRK11034 clpA ATP-dependent Cl 91.7 0.31 6.7E-06 60.2 6.7 92 142-243 491-583 (758)
351 cd01135 V_A-ATPase_B V/A-type 91.7 0.57 1.2E-05 49.7 7.7 85 142-226 72-175 (276)
352 cd03281 ABC_MSH5_euk MutS5 hom 91.7 0.16 3.4E-06 52.7 3.6 21 140-160 30-50 (213)
353 PRK05480 uridine/cytidine kina 91.6 0.1 2.2E-06 54.3 2.1 24 139-162 6-29 (209)
354 cd02021 GntK Gluconate kinase 91.6 1 2.2E-05 43.8 9.1 21 142-162 2-22 (150)
355 PRK07004 replicative DNA helic 91.6 6.9 0.00015 45.9 17.3 52 141-194 215-266 (460)
356 PRK06762 hypothetical protein; 91.5 0.098 2.1E-06 52.1 1.9 23 140-162 3-25 (166)
357 PRK08972 fliI flagellum-specif 91.5 0.57 1.2E-05 53.2 8.0 82 142-226 165-261 (444)
358 cd01122 GP4d_helicase GP4d_hel 91.5 1.1 2.4E-05 48.8 10.2 51 141-193 32-82 (271)
359 PRK09165 replicative DNA helic 91.4 7.4 0.00016 46.2 17.6 51 141-193 219-283 (497)
360 cd03246 ABCC_Protease_Secretio 91.4 0.6 1.3E-05 46.7 7.4 125 141-271 30-168 (173)
361 PRK00279 adk adenylate kinase; 91.4 0.25 5.3E-06 51.6 4.8 21 142-162 3-23 (215)
362 COG4618 ArpD ABC-type protease 91.4 0.62 1.3E-05 52.7 7.8 19 143-161 366-384 (580)
363 PRK08006 replicative DNA helic 91.3 7.1 0.00015 45.8 17.1 52 141-194 226-277 (471)
364 PRK05986 cob(I)alamin adenolsy 91.2 0.39 8.3E-06 47.9 5.6 118 141-258 24-159 (191)
365 KOG0735 AAA+-type ATPase [Post 91.2 7.5 0.00016 46.1 16.3 160 106-287 671-848 (952)
366 PRK07132 DNA polymerase III su 91.2 3.9 8.4E-05 44.6 13.8 95 216-320 89-185 (299)
367 PF10443 RNA12: RNA12 protein; 91.1 6.9 0.00015 44.1 15.6 117 218-338 149-297 (431)
368 PF00910 RNA_helicase: RNA hel 91.1 0.13 2.7E-06 46.7 1.9 20 143-162 2-21 (107)
369 PRK09280 F0F1 ATP synthase sub 91.1 0.67 1.5E-05 53.1 8.1 85 142-226 147-247 (463)
370 PRK12597 F0F1 ATP synthase sub 91.1 0.5 1.1E-05 54.4 7.1 85 142-226 146-246 (461)
371 PRK03839 putative kinase; Prov 91.1 0.12 2.7E-06 52.1 2.1 22 142-163 3-24 (180)
372 PRK00889 adenylylsulfate kinas 91.1 0.26 5.5E-06 49.6 4.4 23 141-163 6-28 (175)
373 COG1875 NYN ribonuclease and A 91.0 0.33 7.1E-06 52.3 5.1 35 218-255 352-386 (436)
374 cd03230 ABC_DR_subfamily_A Thi 90.9 0.9 1.9E-05 45.5 8.1 116 141-261 28-159 (173)
375 COG0541 Ffh Signal recognition 90.8 8 0.00017 43.5 15.6 56 140-196 101-157 (451)
376 COG5238 RNA1 Ran GTPase-activa 90.8 0.045 9.8E-07 55.8 -1.4 143 543-714 26-196 (388)
377 TIGR00554 panK_bact pantothena 90.8 0.42 9.2E-06 51.6 5.9 23 139-161 62-84 (290)
378 PF00154 RecA: recA bacterial 90.8 0.43 9.4E-06 52.0 5.9 83 139-227 53-141 (322)
379 PTZ00301 uridine kinase; Provi 90.8 0.13 2.7E-06 53.0 1.8 22 141-162 5-26 (210)
380 TIGR01313 therm_gnt_kin carboh 90.7 0.92 2E-05 44.9 8.0 20 143-162 2-21 (163)
381 PRK12678 transcription termina 90.7 0.47 1E-05 54.9 6.3 83 144-226 421-512 (672)
382 cd03217 ABC_FeS_Assembly ABC-t 90.7 0.71 1.5E-05 47.5 7.3 23 140-162 27-49 (200)
383 CHL00206 ycf2 Ycf2; Provisiona 90.6 1.5 3.3E-05 58.0 11.3 25 141-165 1632-1656(2281)
384 PRK05636 replicative DNA helic 90.6 8.5 0.00018 45.6 16.9 51 141-194 267-318 (505)
385 KOG0652 26S proteasome regulat 90.6 1.8 4E-05 44.1 9.6 22 141-162 207-228 (424)
386 PRK09270 nucleoside triphospha 90.6 0.93 2E-05 47.8 8.3 24 139-162 33-56 (229)
387 TIGR00235 udk uridine kinase. 90.6 0.13 2.9E-06 53.3 1.8 23 140-162 7-29 (207)
388 smart00763 AAA_PrkA PrkA AAA d 90.6 0.3 6.4E-06 53.9 4.5 49 101-163 54-102 (361)
389 KOG0736 Peroxisome assembly fa 90.6 3.5 7.6E-05 49.2 13.1 121 142-281 708-850 (953)
390 PRK06547 hypothetical protein; 90.6 0.14 3.1E-06 50.8 1.9 23 140-162 16-38 (172)
391 PRK07773 replicative DNA helic 90.5 7.3 0.00016 50.1 17.6 51 141-193 219-269 (886)
392 PTZ00185 ATPase alpha subunit; 90.5 1.2 2.6E-05 51.2 9.2 84 143-226 193-298 (574)
393 PRK05595 replicative DNA helic 90.5 8.9 0.00019 45.0 17.0 52 141-194 203-254 (444)
394 PRK14721 flhF flagellar biosyn 90.4 0.86 1.9E-05 52.0 8.1 86 139-226 191-278 (420)
395 PRK05748 replicative DNA helic 90.4 9.7 0.00021 44.8 17.3 52 141-194 205-256 (448)
396 PRK06696 uridine kinase; Valid 90.4 0.15 3.3E-06 53.5 2.1 24 139-162 22-45 (223)
397 cd01428 ADK Adenylate kinase ( 90.4 0.63 1.4E-05 47.7 6.7 21 142-162 2-22 (194)
398 PRK05439 pantothenate kinase; 90.4 1.4 3E-05 48.1 9.3 79 139-218 86-166 (311)
399 PTZ00035 Rad51 protein; Provis 90.3 1.2 2.5E-05 49.8 8.9 53 141-194 120-177 (337)
400 TIGR03305 alt_F1F0_F1_bet alte 90.3 0.64 1.4E-05 53.2 6.9 84 143-226 142-241 (449)
401 PF13671 AAA_33: AAA domain; P 90.2 0.19 4.1E-06 48.5 2.5 19 143-161 3-21 (143)
402 PRK08840 replicative DNA helic 90.1 12 0.00026 43.9 17.5 53 140-194 218-270 (464)
403 TIGR01351 adk adenylate kinase 90.1 0.36 7.8E-06 50.2 4.6 21 142-162 2-22 (210)
404 PLN02924 thymidylate kinase 90.1 0.69 1.5E-05 48.1 6.6 32 140-171 17-48 (220)
405 PRK08149 ATP synthase SpaL; Va 90.1 1.1 2.3E-05 51.2 8.5 82 142-226 154-250 (428)
406 cd02024 NRK1 Nicotinamide ribo 90.1 0.19 4.2E-06 50.4 2.4 21 142-162 2-22 (187)
407 COG1419 FlhF Flagellar GTP-bin 90.1 0.8 1.7E-05 50.9 7.2 86 139-226 203-290 (407)
408 cd03369 ABCC_NFT1 Domain 2 of 90.0 2.9 6.3E-05 43.3 11.3 21 141-161 36-56 (207)
409 COG3640 CooC CO dehydrogenase 90.0 0.28 6.1E-06 49.6 3.4 40 142-182 3-43 (255)
410 TIGR01069 mutS2 MutS2 family p 90.0 0.16 3.4E-06 63.2 2.0 111 216-339 401-519 (771)
411 PRK13946 shikimate kinase; Pro 90.0 0.22 4.7E-06 50.5 2.7 25 139-163 10-34 (184)
412 PRK08927 fliI flagellum-specif 90.0 0.99 2.1E-05 51.6 8.1 81 143-226 162-257 (442)
413 PF07724 AAA_2: AAA domain (Cd 89.9 0.087 1.9E-06 52.2 -0.2 37 143-179 7-43 (171)
414 PRK14528 adenylate kinase; Pro 89.8 0.35 7.6E-06 49.0 4.1 21 142-162 4-24 (186)
415 TIGR01040 V-ATPase_V1_B V-type 89.8 1.1 2.3E-05 51.2 8.1 85 142-226 144-256 (466)
416 PF13481 AAA_25: AAA domain; P 89.8 1.1 2.3E-05 45.9 7.8 38 142-179 35-81 (193)
417 PRK09580 sufC cysteine desulfu 89.8 1.7 3.7E-05 46.6 9.6 22 141-162 29-50 (248)
418 PRK14723 flhF flagellar biosyn 89.7 1.1 2.3E-05 54.9 8.5 86 139-226 185-272 (767)
419 TIGR00064 ftsY signal recognit 89.7 0.61 1.3E-05 50.3 6.0 86 139-226 72-163 (272)
420 TIGR03877 thermo_KaiC_1 KaiC d 89.6 1.3 2.8E-05 47.0 8.4 46 140-188 22-67 (237)
421 cd03250 ABCC_MRP_domain1 Domai 89.6 4.4 9.6E-05 41.8 12.3 22 141-162 33-54 (204)
422 PRK05922 type III secretion sy 89.6 1.3 2.9E-05 50.5 8.8 82 142-226 160-256 (434)
423 cd01132 F1_ATPase_alpha F1 ATP 89.6 0.86 1.9E-05 48.4 6.8 82 142-226 72-170 (274)
424 PF03969 AFG1_ATPase: AFG1-lik 89.6 0.44 9.6E-06 53.4 5.0 105 139-259 62-169 (362)
425 PRK04040 adenylate kinase; Pro 89.6 0.18 4E-06 50.9 1.9 22 141-162 4-25 (188)
426 PRK06936 type III secretion sy 89.6 1.1 2.5E-05 51.0 8.3 82 142-226 165-261 (439)
427 TIGR03498 FliI_clade3 flagella 89.6 1 2.2E-05 51.3 7.9 83 142-226 143-239 (418)
428 PF08433 KTI12: Chromatin asso 89.5 0.23 4.9E-06 53.3 2.6 21 142-162 4-24 (270)
429 cd02023 UMPK Uridine monophosp 89.5 0.22 4.7E-06 51.3 2.4 21 142-162 2-22 (198)
430 PRK13947 shikimate kinase; Pro 89.4 0.23 5E-06 49.7 2.4 22 142-163 4-25 (171)
431 PRK07667 uridine kinase; Provi 89.4 0.21 4.5E-06 51.0 2.1 23 140-162 18-40 (193)
432 cd00544 CobU Adenosylcobinamid 89.4 1.3 2.8E-05 43.8 7.6 78 143-226 3-82 (169)
433 cd03282 ABC_MSH4_euk MutS4 hom 89.4 0.2 4.3E-06 51.4 2.0 119 140-264 30-158 (204)
434 KOG3864 Uncharacterized conser 89.4 0.072 1.6E-06 52.3 -1.2 63 1012-1074 121-187 (221)
435 TIGR01425 SRP54_euk signal rec 89.4 0.68 1.5E-05 52.8 6.3 23 139-161 100-122 (429)
436 KOG0736 Peroxisome assembly fa 89.3 2 4.2E-05 51.2 9.9 65 246-315 532-599 (953)
437 PF13479 AAA_24: AAA domain 89.3 0.93 2E-05 47.1 6.9 18 142-159 6-23 (213)
438 PRK07594 type III secretion sy 89.3 1.1 2.4E-05 51.2 7.9 82 142-226 158-254 (433)
439 cd00464 SK Shikimate kinase (S 89.3 0.17 3.6E-06 49.7 1.3 22 142-163 2-23 (154)
440 KOG3864 Uncharacterized conser 89.3 0.053 1.2E-06 53.2 -2.2 39 1126-1164 151-189 (221)
441 PF03205 MobB: Molybdopterin g 89.3 0.26 5.6E-06 47.0 2.5 37 142-178 3-39 (140)
442 PRK14527 adenylate kinase; Pro 89.3 0.46 9.9E-06 48.5 4.5 24 140-163 7-30 (191)
443 PRK13949 shikimate kinase; Pro 89.3 0.23 5E-06 49.3 2.2 22 142-163 4-25 (169)
444 PRK09519 recA DNA recombinatio 89.2 0.77 1.7E-05 56.3 6.9 81 141-227 62-148 (790)
445 TIGR02322 phosphon_PhnN phosph 89.1 0.22 4.7E-06 50.3 1.9 22 141-162 3-24 (179)
446 PF07726 AAA_3: ATPase family 89.1 0.17 3.8E-06 46.3 1.1 20 143-162 3-22 (131)
447 TIGR00665 DnaB replicative DNA 89.0 19 0.00041 42.2 18.4 51 141-193 197-247 (434)
448 cd01136 ATPase_flagellum-secre 89.0 1.9 4.2E-05 47.4 9.2 83 141-226 71-168 (326)
449 PRK00131 aroK shikimate kinase 88.9 0.25 5.3E-06 49.7 2.3 22 141-162 6-27 (175)
450 PRK13543 cytochrome c biogenes 88.9 3 6.5E-05 43.4 10.4 22 141-162 39-60 (214)
451 PF01583 APS_kinase: Adenylyls 88.9 0.26 5.7E-06 47.4 2.3 22 142-163 5-26 (156)
452 PRK09099 type III secretion sy 88.9 1.3 2.8E-05 50.8 8.1 83 142-226 166-262 (441)
453 COG1936 Predicted nucleotide k 88.8 0.27 5.9E-06 47.3 2.2 19 142-160 3-21 (180)
454 cd02020 CMPK Cytidine monophos 88.8 0.29 6.2E-06 47.5 2.5 21 142-162 2-22 (147)
455 TIGR00176 mobB molybdopterin-g 88.8 0.33 7.2E-06 47.3 2.9 32 142-173 2-33 (155)
456 TIGR01039 atpD ATP synthase, F 88.8 1.2 2.6E-05 51.0 7.6 85 142-226 146-246 (461)
457 KOG2004 Mitochondrial ATP-depe 88.7 0.88 1.9E-05 53.5 6.5 23 140-162 439-461 (906)
458 KOG0991 Replication factor C, 88.7 1.4 3.1E-05 44.3 7.1 19 143-161 52-70 (333)
459 PRK14531 adenylate kinase; Pro 88.6 0.49 1.1E-05 47.9 4.1 21 142-162 5-25 (183)
460 TIGR01360 aden_kin_iso1 adenyl 88.6 0.29 6.2E-06 49.9 2.5 22 141-162 5-26 (188)
461 COG1066 Sms Predicted ATP-depe 88.5 1.1 2.3E-05 49.6 6.7 78 143-228 97-179 (456)
462 COG0703 AroK Shikimate kinase 88.5 0.18 3.8E-06 49.1 0.8 24 141-164 4-27 (172)
463 PRK06995 flhF flagellar biosyn 88.5 1 2.2E-05 52.2 7.0 85 140-226 257-343 (484)
464 PRK15429 formate hydrogenlyase 88.5 1.4 3E-05 55.0 8.9 111 140-257 400-521 (686)
465 COG0194 Gmk Guanylate kinase [ 88.4 0.41 8.8E-06 46.8 3.2 23 141-163 6-28 (191)
466 cd02028 UMPK_like Uridine mono 88.4 0.3 6.6E-06 49.1 2.5 21 142-162 2-22 (179)
467 TIGR03878 thermo_KaiC_2 KaiC d 88.4 1 2.2E-05 48.4 6.6 38 141-179 38-75 (259)
468 PF02456 Adeno_IVa2: Adenoviru 88.4 3.3 7.3E-05 43.8 9.8 74 103-176 50-125 (369)
469 PRK03846 adenylylsulfate kinas 88.4 0.63 1.4E-05 47.8 4.8 23 140-162 25-47 (198)
470 smart00053 DYNc Dynamin, GTPas 88.3 4.8 0.0001 42.3 11.3 23 140-162 27-49 (240)
471 cd00071 GMPK Guanosine monopho 88.3 0.33 7.1E-06 46.3 2.4 21 142-162 2-22 (137)
472 cd01121 Sms Sms (bacterial rad 88.3 1.5 3.3E-05 49.5 8.1 79 141-226 84-167 (372)
473 COG0466 Lon ATP-dependent Lon 88.3 3.5 7.5E-05 49.1 10.9 133 141-287 352-508 (782)
474 cd00227 CPT Chloramphenicol (C 88.3 0.27 6E-06 49.3 2.0 22 141-162 4-25 (175)
475 TIGR01287 nifH nitrogenase iro 88.2 0.3 6.6E-06 53.3 2.5 23 140-162 1-23 (275)
476 PRK06761 hypothetical protein; 88.2 0.35 7.7E-06 51.8 2.9 33 140-172 4-36 (282)
477 TIGR03263 guanyl_kin guanylate 88.2 0.3 6.5E-06 49.3 2.3 22 141-162 3-24 (180)
478 cd00267 ABC_ATPase ABC (ATP-bi 88.1 0.93 2E-05 44.5 5.7 115 141-262 27-145 (157)
479 KOG1051 Chaperone HSP104 and r 88.1 1.2 2.6E-05 55.0 7.5 89 144-242 596-685 (898)
480 PRK14529 adenylate kinase; Pro 88.0 1.2 2.5E-05 46.3 6.4 80 142-226 3-85 (223)
481 PRK05688 fliI flagellum-specif 87.9 1.8 4E-05 49.6 8.5 82 142-226 171-267 (451)
482 CHL00059 atpA ATP synthase CF1 87.9 1.5 3.2E-05 50.5 7.7 81 143-226 145-242 (485)
483 smart00534 MUTSac ATPase domai 87.9 0.29 6.2E-06 49.6 1.9 54 209-263 68-128 (185)
484 PRK11608 pspF phage shock prot 87.8 2.1 4.5E-05 47.9 8.8 21 141-161 31-51 (326)
485 PRK12339 2-phosphoglycerate ki 87.8 0.31 6.7E-06 49.6 2.0 23 140-162 4-26 (197)
486 PRK05057 aroK shikimate kinase 87.8 0.35 7.5E-06 48.3 2.4 22 141-162 6-27 (172)
487 smart00369 LRR_TYP Leucine-ric 87.7 0.37 8E-06 30.4 1.6 19 547-565 2-20 (26)
488 smart00370 LRR Leucine-rich re 87.7 0.37 8E-06 30.4 1.6 19 547-565 2-20 (26)
489 PRK10078 ribose 1,5-bisphospho 87.7 0.33 7.2E-06 49.3 2.2 22 141-162 4-25 (186)
490 TIGR02788 VirB11 P-type DNA tr 87.6 0.7 1.5E-05 51.1 4.9 111 140-259 145-255 (308)
491 COG4240 Predicted kinase [Gene 87.4 1.1 2.4E-05 44.9 5.4 79 140-218 51-134 (300)
492 TIGR03324 alt_F1F0_F1_al alter 87.3 2 4.3E-05 49.8 8.3 81 143-226 166-263 (497)
493 PRK10416 signal recognition pa 87.3 1.6 3.5E-05 48.2 7.4 25 139-163 114-138 (318)
494 PF08477 Miro: Miro-like prote 87.3 0.39 8.4E-06 44.5 2.3 21 143-163 3-23 (119)
495 PRK15453 phosphoribulokinase; 87.3 1.7 3.6E-05 46.3 7.1 75 140-216 6-89 (290)
496 TIGR03574 selen_PSTK L-seryl-t 87.2 0.36 7.8E-06 51.7 2.3 22 142-163 2-23 (249)
497 COG0003 ArsA Predicted ATPase 87.2 0.52 1.1E-05 51.6 3.5 47 140-187 3-49 (322)
498 COG2019 AdkA Archaeal adenylat 87.2 0.34 7.3E-06 46.1 1.7 22 140-161 5-26 (189)
499 TIGR00455 apsK adenylylsulfate 87.1 1.2 2.6E-05 45.2 5.9 22 141-162 20-41 (184)
500 COG2401 ABC-type ATPase fused 87.1 0.91 2E-05 49.8 5.1 60 208-268 516-579 (593)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-78 Score=732.19 Aligned_cols=734 Identities=29% Similarity=0.439 Sum_probs=521.7
Q ss_pred HHHHHHHhhhhhhhHHhhhhhHHHHHHHcCCCcccccccccccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhhhh
Q 048135 43 TFLIYSDLAYDVEDVLDEFTTEVLARKLMGGHHAITGKVENLIPNCLVNLSPSAVKYNVGMKYKIKSITCRLEEICKQRV 122 (1189)
Q Consensus 43 ~l~~~~~~~yd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~~~~ 122 (1189)
..+.+++++|++||.++.|..+...++..+.-.+ .....+.... ..+++..+..+..+..++..+.+..+
T Consensus 60 ~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~-~~~~~~~~c~---------~~~~~~~~~~~~~~~~rv~~~l~~ve 129 (889)
T KOG4658|consen 60 WEEDVGDLVYLAEDIIWLFLVEEIERKANDLLST-RSVERQRLCL---------CGFCSKNVSDSYKYGKRVSKVLREVE 129 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh-hHHHHHHHhh---------hhhHhHhhhhhHhHHHHHHHHHHHHH
Confidence 3334488999999999999998876643221110 0011111110 12344455555555555555555444
Q ss_pred cccccee---cCC---------C---C------------------cccCCCCCeEEccCCCcHHHHHHHHhcCcc-ccC-
Q 048135 123 DLGLQII---AGM---------S---S------------------ATAWQRPPTLVGMGGIGKTTLARLVYNDKE-VEG- 167 (1189)
Q Consensus 123 ~~~~~~~---~~~---------~---~------------------~~~~~~~~~I~G~gG~GKTtla~~v~~~~~-~~~- 167 (1189)
.++.... .+. . . ...+.++++|+||||+||||||++++|+.. ++.
T Consensus 130 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~ 209 (889)
T KOG4658|consen 130 SLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNH 209 (889)
T ss_pred HhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhccc
Confidence 4442210 000 0 0 011224567999999999999999999987 777
Q ss_pred cCceEEEEecCCcCHHHHHHHHHHHccCCCCCC--CChhHHHHHHHHHHccCceEEEecCCCCCChhhHHhhccccCCCC
Q 048135 168 FNPKAWVCVSEDFDVLKITKAILESVTSSPSNL--KDLNQVQIQLEKAIAGQKFLIVLDNVWSKNYGLWKTLKSPFMAGT 245 (1189)
Q Consensus 168 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~ 245 (1189)
||.++||+||+.|+...++++|++.++...... .+.++.+..|.+.|++|||+||+||||++ .+|+.++.++|...
T Consensus 210 Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~ 287 (889)
T KOG4658|consen 210 FDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRE 287 (889)
T ss_pred CceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCcc
Confidence 999999999999999999999999998754432 33478899999999999999999999998 56999999999998
Q ss_pred CCcEEEEEcCCchhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 048135 246 PGSKIIVTTRSVDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLL 324 (1189)
Q Consensus 246 ~gs~iivTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L 324 (1189)
.||+|++|||++.|+.. +++...++++.|+.+|||+||.+.||..... .++.++++|++|+++|+|+|||++++|+.|
T Consensus 288 ~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~m 366 (889)
T KOG4658|consen 288 NGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLL 366 (889)
T ss_pred CCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHh
Confidence 99999999999999998 7888899999999999999999999876432 334589999999999999999999999999
Q ss_pred cCCCChhHHHHHHhhhccCcC----C-CCChHHHHHHhHhcCchhHHHHHhHhccCCCCceechHHHHHHHHHcCCcccC
Q 048135 325 CCKQRDDEWQGILKSRIWDLS----E-ESDILPVLRLSYHHLPSHLKRCFSYSAIFPKGYEFEEMELILLWMADGLIQQS 399 (1189)
Q Consensus 325 ~~~~~~~~w~~~l~~~~~~~~----~-~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~i~~~ 399 (1189)
+.++...+|+++.+...+... . .+.|.++|++|||.||++.|.||+|||+||+||.|+++.+|.+|+||||+++.
T Consensus 367 a~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~ 446 (889)
T KOG4658|consen 367 ACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPL 446 (889)
T ss_pred cCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcc
Confidence 999998899999987655422 2 46789999999999999999999999999999999999999999999999997
Q ss_pred ccchhHHHHHHHHHHHHHhcccccccc--CCCCceEeChhHHHHHHHhhc-----ccceeeecc--cccCCCCcccccee
Q 048135 400 EDNKQMEDLGHKYFRDLLSRSIFQKSC--NNSSKFLMHDLVNDLAQWVSG-----ETNFRLEDE--LKANKQPERFRRAR 470 (1189)
Q Consensus 400 ~~~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~~mHdlv~d~~~~i~~-----~~~~~~~~~--~~~~~~~~~~~~~r 470 (1189)
+++..++|.|+.|+.+|+++++++... ....+|+|||+|||+|.++++ .++..+... ...-.+...+..+|
T Consensus 447 ~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~r 526 (889)
T KOG4658|consen 447 DGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVR 526 (889)
T ss_pred ccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhhee
Confidence 778899999999999999999999865 356789999999999999999 454433321 11112344567789
Q ss_pred EEEeEecCCCCcccccccCCCCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCC-CcccCccccCcccc
Q 048135 471 HSSYVCGYSDDFHKYEIFPEVECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYH-IIELPNSIGRLMHL 549 (1189)
Q Consensus 471 ~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~lp~~i~~l~~L 549 (1189)
+++++....... ..-...+.++||+...+.. ........+|..++.||||||++|. +.++|++|++|.||
T Consensus 527 r~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 527 RMSLMNNKIEHI---AGSSENPKLRTLLLQRNSD------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred EEEEeccchhhc---cCCCCCCccceEEEeecch------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 999887543222 2233455799998877632 1223445678899999999999775 78999999999999
Q ss_pred cEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCCcccccCCCCCCCCCCCceeCceecc
Q 048135 550 RYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDVHLIKEMPLGMEEWKCLQTLSNFIVS 629 (1189)
Q Consensus 550 ~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 629 (1189)
|||+|+++.|+.||.++++|+.|++||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+...
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheee
Confidence 99999999999999999999999999999988777777777779999999987654 22222234555555555444332
Q ss_pred cCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCC-CCCC---CC-CCc
Q 048135 630 EGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPS-WVGD---PS-FSN 704 (1189)
Q Consensus 630 ~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~---~~-~~~ 704 (1189)
.. +. .....+..+.+|..+...-.. ...........+..+.+|+.|.+.++.+..... |... .. |++
T Consensus 677 ~~-----s~--~~~e~l~~~~~L~~~~~~l~~-~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 677 IS-----SV--LLLEDLLGMTRLRSLLQSLSI-EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred cc-----hh--HhHhhhhhhHHHHHHhHhhhh-cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 10 00 000112222222221111000 001122334456677888999988877654322 3211 11 556
Q ss_pred eeEEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCccccCCC----CCCCCCcccee-eccCcccccccCcCCccc
Q 048135 705 IVMITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIYGDG----CSKPFQSLETL-CFRDLQEWELWDPIGKNE 779 (1189)
Q Consensus 705 L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~----~~~~f~~L~~L-~l~~~~~l~~~~~~~~~~ 779 (1189)
+..+...+|.....+.+....|+|+.|.+..|..++.+.+...... ....|+++..+ .+.+.+.+.......
T Consensus 749 l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--- 825 (889)
T KOG4658|consen 749 LSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--- 825 (889)
T ss_pred HHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc---
Confidence 7777777776666665566678899999988877765543221100 01235555555 355544444333221
Q ss_pred ccccCCcccEEeecCCCCccCCCCCCCCCccEEEEecc
Q 048135 780 YVESFPLLRELSIVKCPKLSGRLPDHLPSLKKLVISEC 817 (1189)
Q Consensus 780 ~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c 817 (1189)
-.++.|+.+.+..||++. . +|.+.++.+.+|
T Consensus 826 --l~~~~l~~~~ve~~p~l~-~----~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 826 --LSFLKLEELIVEECPKLG-K----LPLLSTLTIVGC 856 (889)
T ss_pred --cCccchhheehhcCcccc-c----Cccccccceecc
Confidence 234556666666666664 2 344555555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2e-66 Score=667.69 Aligned_cols=525 Identities=19% Similarity=0.280 Sum_probs=368.3
Q ss_pred HHHHHHHHHHHHHHHHhh-hhhhhHHhhhhhHHHHHHHcCCCcccccccccccccccccCCCCcccchhhHHHHHHHHHH
Q 048135 34 RSKLEKWRKTFLIYSDLA-YDVEDVLDEFTTEVLARKLMGGHHAITGKVENLIPNCLVNLSPSAVKYNVGMKYKIKSITC 112 (1189)
Q Consensus 34 ~~~~~~l~~~l~~~~~~~-yd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 112 (1189)
.+++++|+++|.++.+++ |+..+.-+|.. .+.. ++..|...+. .+.+......+|++.+++++..
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~~~~~~~E~~--~i~~--------Iv~~v~~~l~----~~~~~~~~~~vG~~~~l~~l~~ 198 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYHSQNWPNEAK--MIEE--------IANDVLGKLN----LTPSNDFEDFVGIEDHIAKMSS 198 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCceecCCCCCHHH--HHHH--------HHHHHHHhhc----cccCcccccccchHHHHHHHHH
Confidence 467999999999997776 44332112211 1100 0111111111 0112233456788888888876
Q ss_pred HHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEe---cCC---------
Q 048135 113 RLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCV---SED--------- 179 (1189)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~---~~~--------- 179 (1189)
.+.. . ....++++||||||+||||||+++|+. +.. |++.+|+.. +..
T Consensus 199 lL~l--------~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 199 LLHL--------E----------SEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred HHcc--------c----------cCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccc
Confidence 6631 0 123467889999999999999999985 444 888887742 111
Q ss_pred --cC-HHHHHHHHHHHccCCCC-CCCChhHHHHHHHHHHccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcC
Q 048135 180 --FD-VLKITKAILESVTSSPS-NLKDLNQVQIQLEKAIAGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTR 255 (1189)
Q Consensus 180 --~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 255 (1189)
+. ...++++++.++..... .... ...++++++++|+||||||||+. ++|+.+.....++++||+||||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeC
Confidence 11 22455555555543321 1111 14578889999999999999765 789999887778889999999999
Q ss_pred CchhhhccCCCceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHH
Q 048135 256 SVDVALTLGPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRDDEWQG 335 (1189)
Q Consensus 256 ~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~~~w~~ 335 (1189)
+++++..++..++|+++.++++|||+||+++||+... +++++++++++|+++|+|+||||+++|++|+++ ...+|+.
T Consensus 333 d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~ 409 (1153)
T PLN03210 333 DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMD 409 (1153)
T ss_pred cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHH
Confidence 9999988877889999999999999999999997543 346789999999999999999999999999987 5689999
Q ss_pred HHhhhccCcCCCCChHHHHHHhHhcCch-hHHHHHhHhccCCCCceechHHHHHHHHHcCCcccCccchhHHHHHHHHHH
Q 048135 336 ILKSRIWDLSEESDILPVLRLSYHHLPS-HLKRCFSYSAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMEDLGHKYFR 414 (1189)
Q Consensus 336 ~l~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~ 414 (1189)
++++..... +.+|.++|++||++|++ ..|.||++|||||.++.++ .+..|+|.+.+.. +..++
T Consensus 410 ~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~ 473 (1153)
T PLN03210 410 MLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLK 473 (1153)
T ss_pred HHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChH
Confidence 998865432 46799999999999986 5999999999999997654 4677888765532 22388
Q ss_pred HHHhccccccccCCCCceEeChhHHHHHHHhhcccc-------eeeec--ccccCCCCccccceeEEEeEecCCCCcc-c
Q 048135 415 DLLSRSIFQKSCNNSSKFLMHDLVNDLAQWVSGETN-------FRLED--ELKANKQPERFRRARHSSYVCGYSDDFH-K 484 (1189)
Q Consensus 415 ~L~~~~ll~~~~~~~~~~~mHdlv~d~~~~i~~~~~-------~~~~~--~~~~~~~~~~~~~~r~l~~~~~~~~~~~-~ 484 (1189)
.|+++++++... +++.|||++|+||+.+++++. +.... ............+++++++......... .
T Consensus 474 ~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 474 NLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred HHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 899999998753 569999999999999987653 11110 0000011222345666665432221111 2
Q ss_pred ccccCCCCcceEEecCccCCCcccccchhhhhhhhhcCC-CcceEEEeccCCCcccCccccCcccccEEecccccccccc
Q 048135 485 YEIFPEVECLRTFLPMLKGDHTCARFISNMFLSDLLPKF-KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLP 563 (1189)
Q Consensus 485 ~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP 563 (1189)
..+|..|..|+.|..+...... .......++ ..|..+ .+||.|++.++++..+|..| .+.+|++|+++++.+..+|
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~-~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQ-KKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccc-cccceeecC-cchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc
Confidence 2346778888877664432100 000111122 223333 46899999988888888887 5788899999988888888
Q ss_pred ccccCCCCCcEEeccCccccccCchhhhccccCCcccccCCcccccCCCCCCCCCCCceeC
Q 048135 564 ESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDVHLIKEMPLGMEEWKCLQTLS 624 (1189)
Q Consensus 564 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 624 (1189)
..+..+++|++|+|++|..++.+|. ++.+++|++|++++|..+..+|..++++++|+.|.
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 8888899999999988877888875 78888899999888877778887777766666663
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.6e-41 Score=372.04 Aligned_cols=258 Identities=37% Similarity=0.622 Sum_probs=209.0
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCC---CCCChhHHHHHHHHHH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPS---NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l 214 (1189)
.++++|+||||+||||||++++++...+. |+.++||.++...+...+++.|+.++..... ...+.++....+++.|
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 35678999999999999999998866667 9999999999999999999999999987743 3467788999999999
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhccCC-CceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGP-IDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++++||||||||+. ..|+.+...++.+..|++||||||+..++..++. ...|++++|+.+||++||.+.++... .
T Consensus 99 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~ 175 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-S 175 (287)
T ss_dssp CCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS--
T ss_pred ccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 999999999999876 5899998888887789999999999999877654 67899999999999999999997654 2
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHhhhccCcCC----CCChHHHHHHhHhcCchhHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRDDEWQGILKSRIWDLSE----ESDILPVLRLSYHHLPSHLKRCF 369 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~~~w~~~l~~~~~~~~~----~~~i~~~l~~sy~~L~~~~k~~f 369 (1189)
...+...+++++|+++|+|+||||+++|++|+.+....+|+.+++...+.... ...+..++.+||+.||++.|+||
T Consensus 176 ~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f 255 (287)
T PF00931_consen 176 ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCF 255 (287)
T ss_dssp ---TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHH
Confidence 23345567899999999999999999999997766678899998775555432 36689999999999999999999
Q ss_pred hHhccCCCCceechHHHHHHHHHcCCcccC
Q 048135 370 SYSAIFPKGYEFEEMELILLWMADGLIQQS 399 (1189)
Q Consensus 370 l~~a~fp~~~~~~~~~li~~wia~g~i~~~ 399 (1189)
+|||+||+++.|+++.++++|+|+|||...
T Consensus 256 ~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 256 LYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred hhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.5e-37 Score=396.45 Aligned_cols=508 Identities=19% Similarity=0.182 Sum_probs=292.0
Q ss_pred hhhhcCCCcceEEEeccCCCc-ccCcccc-CcccccEEeccccccc-cccccccCCCCCcEEeccCccccccCchhhhcc
Q 048135 517 SDLLPKFKKLRVLSLKSYHII-ELPNSIG-RLMHLRYLDMSNTAIS-SLPESTCSLINLQTLLLRRCFYLMKWPSKVMNL 593 (1189)
Q Consensus 517 ~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~-~l~~L~~L~L~~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 593 (1189)
+..|..+++|++|+|++|.+. .+|..+. .+.+|++|+|++|.+. .+|. +.+++|++|++++|.....+|..++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 345678888999999988876 6776654 8889999999988876 4453 568889999999886556788888999
Q ss_pred ccCCcccccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhcc
Q 048135 594 INLRHLDITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGM 673 (1189)
Q Consensus 594 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 673 (1189)
++|++|++++|.....+|..++++++|++|+...+. +.. ..+..
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--------l~~----------------------------~~p~~ 207 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ--------LVG----------------------------QIPRE 207 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCC--------CcC----------------------------cCChH
Confidence 999999998887556778778888777777532110 000 11222
Q ss_pred CCCCCCcceEEEeeeCCC-CCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccccCceEeCccccCCCC
Q 048135 674 LKSHTSLKELTIKCYGGT-RFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREMTELKIIGSEIYGDGC 751 (1189)
Q Consensus 674 l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 751 (1189)
+..+++|+.|+++++... .+|..++ .+++|+.|++++|.....+| .++.+++|+.|+++++.....++..
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------ 279 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS------ 279 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh------
Confidence 334445555555555443 3455444 35666666666665544555 4666666666666654322111111
Q ss_pred CCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC---CCCCccEEEEeccCCcc---cccC
Q 048135 752 SKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD---HLPSLKKLVISECAQFE---VSFA 825 (1189)
Q Consensus 752 ~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~~~---~~~~ 825 (1189)
...+++|++|++++| .+.+.+|. .+++|+.|++.+|.... ..+.
T Consensus 280 -----------------------------l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 280 -----------------------------IFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred -----------------------------HhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 233455666666655 34334443 22333444333332111 1122
Q ss_pred CCCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccc-cCCCC
Q 048135 826 SLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQE-VCFLP 904 (1189)
Q Consensus 826 ~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~ 904 (1189)
.+++|+.|++++|... +.+|..+..+++|+.|++++|.....+|. ...++
T Consensus 330 ~l~~L~~L~L~~n~l~-----------------------------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 330 SLPRLQVLQLWSNKFS-----------------------------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred cCCCCCEEECcCCCCc-----------------------------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 3333333333333210 12344445555566666655543333332 22344
Q ss_pred CccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCccchhh
Q 048135 905 ILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIK 984 (1189)
Q Consensus 905 ~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~ 984 (1189)
+|+.|++++|+....+|..+. .+++|+.|++++|.....+|.
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~------------------------------------- 422 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNSFSGELPS------------------------------------- 422 (968)
T ss_pred CCCEEECcCCEecccCCHHHh-CCCCCCEEECcCCEeeeECCh-------------------------------------
Confidence 555555555443334443332 344455554444432222221
Q ss_pred hhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCc
Q 048135 985 YLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSS 1064 (1189)
Q Consensus 985 ~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~ 1064 (1189)
.+..+++|+.+++++|.....+|..+..+++|+.|++++|...+.+|.....++|+.|++++|.....+|..+.++++
T Consensus 423 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 423 --EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred --hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence 122345555566666655556666666677777777777765555555444457777777776655666666666666
Q ss_pred cccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCc
Q 048135 1065 LQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSS 1144 (1189)
Q Consensus 1065 L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 1144 (1189)
|+.|++ + .|.+....+..+.++++|++|+|++|...+.+|... ..+++|+.|++++|...+.+|
T Consensus 501 L~~L~L-----------s-~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p- 564 (968)
T PLN00113 501 LMQLKL-----------S-ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF---SEMPVLSQLDLSQNQLSGEIP- 564 (968)
T ss_pred cCEEEC-----------c-CCcceeeCChHHcCccCCCEEECCCCcccccCChhH---hCcccCCEEECCCCcccccCC-
Confidence 666666 3 334443333456677777777777776666666554 456777777777776666677
Q ss_pred CCCCCCCccCceeeccCCCCCCCCCCCCCCCcceeeecCCC
Q 048135 1145 KGFRNLTSLDLLRIRNCPKLTSFPEVGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1145 ~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~ 1185 (1189)
..+.++++|+.|++++|+....+|..+.+.++....+.++|
T Consensus 565 ~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 565 KNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred hhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 66777777777777777766677764444444444444443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.5e-35 Score=378.28 Aligned_cols=506 Identities=19% Similarity=0.177 Sum_probs=335.1
Q ss_pred CcceEEEeccCCCcc-cCccccCcccccEEeccccccc-ccccccc-CCCCCcEEeccCccccccCchhhhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIE-LPNSIGRLMHLRYLDMSNTAIS-SLPESTC-SLINLQTLLLRRCFYLMKWPSKVMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~-lp~~i~~l~~L~~L~L~~~~i~-~LP~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 600 (1189)
.+++.|+|+++.+.. +|..|..+++|++|+|++|.+. .+|..+. .+++|++|++++|.....+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 368999999998764 4788999999999999999987 7898865 899999999999965556765 5789999999
Q ss_pred ccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCc
Q 048135 601 ITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSL 680 (1189)
Q Consensus 601 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L 680 (1189)
+++|.....+|..++++++|++|+...+. .....+..+..+++|
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~------------------------------------l~~~~p~~~~~l~~L 190 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNV------------------------------------LVGKIPNSLTNLTSL 190 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCc------------------------------------ccccCChhhhhCcCC
Confidence 99998555778777777777777431110 000111223344455
Q ss_pred ceEEEeeeCCC-CCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccccCceEeCccccCCCCCCCCCcc
Q 048135 681 KELTIKCYGGT-RFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSL 758 (1189)
Q Consensus 681 ~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L 758 (1189)
+.|++++|... .+|..++ .+++|+.|++++|.....+| .++.+++|+.|+++++.....++.
T Consensus 191 ~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------------- 254 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELG--QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-------------- 254 (968)
T ss_pred CeeeccCCCCcCcCChHHc--CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh--------------
Confidence 55555555433 2444443 35556666665555444444 355555555555554321111110
Q ss_pred ceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCCCCCCccEEEEeccCCcccccCCCCccceEEEecC
Q 048135 759 ETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPDHLPSLKKLVISECAQFEVSFASLPVLSDLSIDGC 838 (1189)
Q Consensus 759 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~~ 838 (1189)
....+++|++|++++| .+.+.+|. .+..+++|++|++++|
T Consensus 255 ---------------------~l~~l~~L~~L~L~~n-~l~~~~p~------------------~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 255 ---------------------SLGNLKNLQYLFLYQN-KLSGPIPP------------------SIFSLQKLISLDLSDN 294 (968)
T ss_pred ---------------------hHhCCCCCCEEECcCC-eeeccCch------------------hHhhccCcCEEECcCC
Confidence 0344566667777666 44434443 2223334444444443
Q ss_pred CCceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccc-cCCCCCccEEEEecCCCC
Q 048135 839 KGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQE-VCFLPILGELEIKNCSAL 917 (1189)
Q Consensus 839 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~c~~l 917 (1189)
... +.+|..+..+++|+.|++++|.....+|. ...+++|+.|++++|...
T Consensus 295 ~l~-----------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 295 SLS-----------------------------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred eec-----------------------------cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 210 22344455566666666666554443332 344666666666666544
Q ss_pred CCCccccccCCCccceEEEccCCCccccccc-CCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCc
Q 048135 918 KFLPEGMKHNNVCLECLLIEGCNSLKFVVKG-QLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGE 996 (1189)
Q Consensus 918 ~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~ 996 (1189)
..+|..+. .+++|+.|++++|.....++.. ...++|+.|++++|.....+|. .+..|++|+.
T Consensus 346 ~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~----------------~~~~~~~L~~ 408 (968)
T PLN00113 346 GEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK----------------SLGACRSLRR 408 (968)
T ss_pred CcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH----------------HHhCCCCCCE
Confidence 45555443 5566777777765543333332 2245677777777654333332 2346788888
Q ss_pred cccccccccccCCCCCCCCCccceEeeccCCCCcccCCC-CCCCCcCeEEEeccCCCccccccccCCCccccccccCCCC
Q 048135 997 NMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKG-GLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTS 1075 (1189)
Q Consensus 997 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 1075 (1189)
|++.+|...+.+|..+..+++|+.|++++|.....+|.. ..+++|+.|++++|...+.+|..+ ..++|+.|++
T Consensus 409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~l----- 482 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDL----- 482 (968)
T ss_pred EECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEEC-----
Confidence 999998888889999999999999999999655444432 235699999999988777777644 2345555555
Q ss_pred CcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCc
Q 048135 1076 LTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDL 1155 (1189)
Q Consensus 1076 L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~ 1155 (1189)
++| .+....+..+.++++|+.|++++|...+.+|... ..+++|++|++++|...+.+| ..+..+++|+.
T Consensus 483 ------s~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~ 551 (968)
T PLN00113 483 ------SRN-QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL---SSCKKLVSLDLSHNQLSGQIP-ASFSEMPVLSQ 551 (968)
T ss_pred ------cCC-ccCCccChhhhhhhccCEEECcCCcceeeCChHH---cCccCCCEEECCCCcccccCC-hhHhCcccCCE
Confidence 554 4444444568899999999999998888888766 578999999999997777788 78999999999
Q ss_pred eeeccCCCCCCCCC-CCCCCCcceeeecCCCC
Q 048135 1156 LRIRNCPKLTSFPE-VGLPSSLLQLYIDGCPL 1186 (1189)
Q Consensus 1156 L~l~~c~~l~~lp~-~~~~~sL~~L~i~~c~~ 1186 (1189)
|++++|+....+|. ...+++|+.|++++|+-
T Consensus 552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred EECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 99999988878887 45678999999999874
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=3.7e-29 Score=257.23 Aligned_cols=464 Identities=21% Similarity=0.246 Sum_probs=275.3
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
+.++..|.||++.+|.+.++|.+++.+..++.|+.++|++.++|+.++.+.+|..|+.++| .+.++|++|+.+..|..|
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhh
Confidence 5677889999999999999999999999999999999999999999999999999999998 788999999999999999
Q ss_pred cccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 600 DITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
+..+|+ +.++|.+++++.+|..|..-. .+++.| ++.....+.
T Consensus 143 ~~~~N~-i~slp~~~~~~~~l~~l~~~~----------------------n~l~~l---------------~~~~i~m~~ 184 (565)
T KOG0472|consen 143 DATNNQ-ISSLPEDMVNLSKLSKLDLEG----------------------NKLKAL---------------PENHIAMKR 184 (565)
T ss_pred hccccc-cccCchHHHHHHHHHHhhccc----------------------cchhhC---------------CHHHHHHHH
Confidence 988887 889999998888777764311 111111 111112456
Q ss_pred cceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCccccCCCCCCCCCccc
Q 048135 680 LKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLE 759 (1189)
Q Consensus 680 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~ 759 (1189)
|++|+...|..+.+|+.++ .+.+|..|++..|+ +..+|.++.+..|++|++.. +.++.++.+..
T Consensus 185 L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~-N~i~~lpae~~------------ 248 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELG--GLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGE-NQIEMLPAEHL------------ 248 (565)
T ss_pred HHhcccchhhhhcCChhhc--chhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcc-cHHHhhHHHHh------------
Confidence 7777777788888888887 47888888888774 56778888888888888864 45555554431
Q ss_pred eeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCCC---CCCccEEEEeccCC--cccccCCCCccceEE
Q 048135 760 TLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPDH---LPSLKKLVISECAQ--FEVSFASLPVLSDLS 834 (1189)
Q Consensus 760 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~---l~~L~~L~l~~c~~--~~~~~~~l~~L~~L~ 834 (1189)
..++++..|++.++ +++ ..|+. +.+|..|+++++.. ++..++++ .|+.|.
T Consensus 249 ----------------------~~L~~l~vLDLRdN-klk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 249 ----------------------KHLNSLLVLDLRDN-KLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred ----------------------cccccceeeecccc-ccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence 23445555555554 554 45542 33444444444322 12234444 555666
Q ss_pred EecCCCceeecccceeEEEEeccc---hhhHhhhhhhhhcccccccCCCCCCcEEEeccCC-CcccccccCCCCCccEEE
Q 048135 835 IDGCKGLVCESFQKVEYLKVVRCE---ELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQ-RLVSFQEVCFLPILGELE 910 (1189)
Q Consensus 835 l~~~~~~~~~~~~~L~~L~l~~~~---~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~l~~L~~L~ 910 (1189)
+.+|+.-++.. ++-.|. -+.++... ...+.+.. =+.=.-+... .-..++......+.+.|+
T Consensus 304 leGNPlrTiRr-------~ii~~gT~~vLKyLrs~-----~~~dglS~---se~~~e~~~t~~~~~~~~~~~~i~tkiL~ 368 (565)
T KOG0472|consen 304 LEGNPLRTIRR-------EIISKGTQEVLKYLRSK-----IKDDGLSQ---SEGGTETAMTLPSESFPDIYAIITTKILD 368 (565)
T ss_pred hcCCchHHHHH-------HHHcccHHHHHHHHHHh-----hccCCCCC---CcccccccCCCCCCcccchhhhhhhhhhc
Confidence 66665332100 000000 01111000 00000000 0000000000 001122333456677788
Q ss_pred EecCCCCCCCccccccCCC--ccceEEEccCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCccchhhhhcc
Q 048135 911 IKNCSALKFLPEGMKHNNV--CLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYV 988 (1189)
Q Consensus 911 l~~c~~l~~lp~~~~~~~~--~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l 988 (1189)
+++ ..++.+|..+|.... -....+++.+ .+..+|...
T Consensus 369 ~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN------------------------qL~elPk~L---------------- 407 (565)
T KOG0472|consen 369 VSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN------------------------QLCELPKRL---------------- 407 (565)
T ss_pred ccc-cccccCCHHHHHHhhhcceEEEecccc------------------------hHhhhhhhh----------------
Confidence 877 577778877663211 1233333332 222222110
Q ss_pred ccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCC-CCCcCeEEEeccCCCccccccccCCCcccc
Q 048135 989 SYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGL-PNTLSRISIGKCENLVALPDRMHNLSSLQE 1067 (1189)
Q Consensus 989 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~-~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 1067 (1189)
.....+++.-+.+++...-.|..+..+++|..|++++| -+..+|.++. ...|+.|+++. +.+..+|..+..+..|+.
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLET 485 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHH
Confidence 00111222223334455556667777888888888776 4666776432 33688888888 477777766655555555
Q ss_pred ccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCC
Q 048135 1068 LEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFP 1137 (1189)
Q Consensus 1068 L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~ 1137 (1189)
+-. +.+.+..+++.++.++.+|.+|++.+ +.+.++|+.. +++++|++|++++||
T Consensus 486 lla------------s~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~L---gnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 486 LLA------------SNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPIL---GNMTNLRHLELDGNP 539 (565)
T ss_pred HHh------------ccccccccChHHhhhhhhcceeccCC-CchhhCChhh---ccccceeEEEecCCc
Confidence 443 55666666666666676777776665 3555555544 344555555555553
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=8.4e-29 Score=254.64 Aligned_cols=99 Identities=25% Similarity=0.354 Sum_probs=90.7
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccC
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITD 603 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 603 (1189)
..|..|++++|.+..+.+.+.++..|.+|++.+|.+.++|++++.+..++.|+.++| .+.++|+.++.+.+|++|+.+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccc
Confidence 457888999999999988899999999999999999999999999999999999998 7899999999999999999999
Q ss_pred CcccccCCCCCCCCCCCceeC
Q 048135 604 VHLIKEMPLGMEEWKCLQTLS 624 (1189)
Q Consensus 604 ~~~~~~~p~~i~~L~~L~~L~ 624 (1189)
|. ..++|.+|+.+-.|..|+
T Consensus 124 n~-~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 124 NE-LKELPDSIGRLLDLEDLD 143 (565)
T ss_pred cc-eeecCchHHHHhhhhhhh
Confidence 88 888999888877776664
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=9.8e-27 Score=264.47 Aligned_cols=457 Identities=23% Similarity=0.249 Sum_probs=279.1
Q ss_pred CCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCccccc
Q 048135 523 FKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDIT 602 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 602 (1189)
.-+|++||+++|.+..+|..|..+.+|+.|+++.|.|...|.+++++.+|++|+|..| .+..+|.++..+++|++|+++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 3459999999999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcce
Q 048135 603 DVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKE 682 (1189)
Q Consensus 603 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~ 682 (1189)
+|. ...+|..+..++.+..+..... ..++. ++.. .++.
T Consensus 123 ~N~-f~~~Pl~i~~lt~~~~~~~s~N---------------------~~~~~-------------------lg~~-~ik~ 160 (1081)
T KOG0618|consen 123 FNH-FGPIPLVIEVLTAEEELAASNN---------------------EKIQR-------------------LGQT-SIKK 160 (1081)
T ss_pred hhc-cCCCchhHHhhhHHHHHhhhcc---------------------hhhhh-------------------hccc-cchh
Confidence 998 7888887777666655532100 00000 0000 1233
Q ss_pred EEEeeeCC-CCCCCCCCCCCCCcee-EEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCccccCCCCCCCCCccce
Q 048135 683 LTIKCYGG-TRFPSWVGDPSFSNIV-MITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLET 760 (1189)
Q Consensus 683 L~l~~~~~-~~~p~~~~~~~~~~L~-~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~ 760 (1189)
+++..+.. ..++..+. +++ .|+|.+|... .-.+..+++|+.|....+ .|..
T Consensus 161 ~~l~~n~l~~~~~~~i~-----~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn--------------------~ls~ 213 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIY-----NLTHQLDLRYNEME--VLDLSNLANLEVLHCERN--------------------QLSE 213 (1081)
T ss_pred hhhhhhhcccchhcchh-----hhheeeecccchhh--hhhhhhccchhhhhhhhc--------------------ccce
Confidence 33332221 11222111 111 2444443221 111222222222222211 0001
Q ss_pred eeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCCCCCCccEEEEeccCCcccccCCCCccceEEEecCCC
Q 048135 761 LCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPDHLPSLKKLVISECAQFEVSFASLPVLSDLSIDGCKG 840 (1189)
Q Consensus 761 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~~~~ 840 (1189)
+ .-.-++|+.|+...|+-.+ ..+. +...+|++++++.+.
T Consensus 214 l-------------------~~~g~~l~~L~a~~n~l~~-~~~~--------------------p~p~nl~~~dis~n~- 252 (1081)
T KOG0618|consen 214 L-------------------EISGPSLTALYADHNPLTT-LDVH--------------------PVPLNLQYLDISHNN- 252 (1081)
T ss_pred E-------------------EecCcchheeeeccCccee-eccc--------------------cccccceeeecchhh-
Confidence 1 1112445555555553221 1111 112244455544433
Q ss_pred ceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccc-cCCCCCccEEEEecCCCCCC
Q 048135 841 LVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQE-VCFLPILGELEIKNCSALKF 919 (1189)
Q Consensus 841 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~c~~l~~ 919 (1189)
+..+|.++..+.+|+.++..+|.. ..+|. +....+|+.|.+..| .++.
T Consensus 253 -----------------------------l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~y 301 (1081)
T KOG0618|consen 253 -----------------------------LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEY 301 (1081)
T ss_pred -----------------------------hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhh
Confidence 233455555566666666655433 33322 334555555555554 4555
Q ss_pred CccccccCCCccceEEEccCCCcccccccCC---CCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCc
Q 048135 920 LPEGMKHNNVCLECLLIEGCNSLKFVVKGQL---LLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGE 996 (1189)
Q Consensus 920 lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~ 996 (1189)
+|+... .+.+|+.|++..+ .+.++|...+ ..+|..|..+. ..+...+. ..=...+.|+.
T Consensus 302 ip~~le-~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~---------------~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 302 IPPFLE-GLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPS---------------YEENNHAALQE 363 (1081)
T ss_pred CCCccc-ccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhh-cccccccc---------------ccchhhHHHHH
Confidence 554433 4555666666542 3444443211 11233333332 22322221 11112456777
Q ss_pred cccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCC--CcCeEEEeccCCCccccccccCCCccccccccCCC
Q 048135 997 NMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPN--TLSRISIGKCENLVALPDRMHNLSSLQELEICFPT 1074 (1189)
Q Consensus 997 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~--~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 1074 (1189)
|++.+|.........+.++.+|+.|++++| .+.+||...+.+ .|++|++++ +.++.+|..+.++..|++|..
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~a---- 437 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRA---- 437 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhh----
Confidence 888888888877778899999999999998 688898865543 899999999 889999999999999999988
Q ss_pred CCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCC-CccceeecccCCCCcccCcCCCCCCCcc
Q 048135 1075 SLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLP-TSLTKLAIAKFPELKHLSSKGFRNLTSL 1153 (1189)
Q Consensus 1075 ~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~l~~l~~L 1153 (1189)
..|.+..+| .+..+++|+.+|++.| .+..+.... ..+ +.|++||+++|..+. +....+..+.++
T Consensus 438 --------hsN~l~~fP--e~~~l~qL~~lDlS~N-~L~~~~l~~---~~p~p~LkyLdlSGN~~l~-~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 438 --------HSNQLLSFP--ELAQLPQLKVLDLSCN-NLSEVTLPE---ALPSPNLKYLDLSGNTRLV-FDHKTLKVLKSL 502 (1081)
T ss_pred --------cCCceeech--hhhhcCcceEEecccc-hhhhhhhhh---hCCCcccceeeccCCcccc-cchhhhHHhhhh
Confidence 677888888 4899999999999985 444322111 356 899999999997633 333555666666
Q ss_pred Cceeecc
Q 048135 1154 DLLRIRN 1160 (1189)
Q Consensus 1154 ~~L~l~~ 1160 (1189)
...++.-
T Consensus 503 ~~~~i~~ 509 (1081)
T KOG0618|consen 503 SQMDITL 509 (1081)
T ss_pred hheeccc
Confidence 6666654
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.4e-22 Score=262.11 Aligned_cols=271 Identities=22% Similarity=0.356 Sum_probs=144.2
Q ss_pred cccCCCCCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCc
Q 048135 875 IRLHGLTSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPL 954 (1189)
Q Consensus 875 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L 954 (1189)
..+..+++|+.|++++|..+..+|....+++|+.|++++|..+..+|..+. .+++|+.|++++|..++.+|....+++|
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 344555666666666666566666555566666666666666666665544 5566666666666666666655455566
Q ss_pred ceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCC-----
Q 048135 955 KKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSF----- 1029 (1189)
Q Consensus 955 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l----- 1029 (1189)
+.|++++|..++.+|.. .++|++|+++++. +..+|..+ .+++|++|.+.+|...
T Consensus 707 ~~L~Lsgc~~L~~~p~~-------------------~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI-------------------STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CEEeCCCCCCccccccc-------------------cCCcCeeecCCCc-cccccccc-cccccccccccccchhhcccc
Confidence 66666666655544421 1234444444443 34445433 3556666666554211
Q ss_pred -cccCC--CCCCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEE
Q 048135 1030 -TSFPK--GGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSI 1106 (1189)
Q Consensus 1030 -~~~p~--~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l 1106 (1189)
..++. ...+++|+.|++++|+.+..+|..++++++|+.|++.. |+.++.+|.. .++++|+.|++
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~-----------C~~L~~LP~~--~~L~sL~~L~L 832 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN-----------CINLETLPTG--INLESLESLDL 832 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC-----------CCCcCeeCCC--CCccccCEEEC
Confidence 00100 12234666666666666666666666666666655533 3333333321 14555555555
Q ss_pred cccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCC-CCCCCCcceeeecCCC
Q 048135 1107 GGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPE-VGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1107 ~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~~sL~~L~i~~c~ 1185 (1189)
++|..+..+|. .+++|+.|++++| .+..+| .++..+++|+.|++++|+++..+|. ...+++|+.|++++|+
T Consensus 833 s~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 833 SGCSRLRTFPD------ISTNISDLNLSRT-GIEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCccccccc------cccccCEeECCCC-CCccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 55555555553 2345555555554 445555 4455555555555555555555554 2334455555555555
Q ss_pred CCC
Q 048135 1186 LLK 1188 (1189)
Q Consensus 1186 ~L~ 1188 (1189)
+|+
T Consensus 905 ~L~ 907 (1153)
T PLN03210 905 ALT 907 (1153)
T ss_pred ccc
Confidence 543
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=2.1e-25 Score=253.77 Aligned_cols=251 Identities=22% Similarity=0.234 Sum_probs=156.8
Q ss_pred CCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCC-CCCcceEEe
Q 048135 881 TSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQL-LLPLKKLQI 959 (1189)
Q Consensus 881 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l 959 (1189)
++|+.|..++|+..+ ......+.+|++++++.+ .+..+|.++. .+.+|+.+++.++. +..++...+ .++|+.|.+
T Consensus 219 ~~l~~L~a~~n~l~~-~~~~p~p~nl~~~dis~n-~l~~lp~wi~-~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTT-LDVHPVPLNLQYLDISHN-NLSNLPEWIG-ACANLEALNANHNR-LVALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCccee-eccccccccceeeecchh-hhhcchHHHH-hcccceEecccchh-HHhhHHHHhhhhhHHHHHh
Confidence 566666677765542 222344677888888873 6777775554 67777777776543 343433211 234444444
Q ss_pred ecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCC
Q 048135 960 RKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPN 1039 (1189)
Q Consensus 960 ~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~ 1039 (1189)
..| .+ ..+|.....+.+|++|+++.| ++.++|...+..
T Consensus 295 ~~n-el----------------------------------------~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 295 AYN-EL----------------------------------------EYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAV 332 (1081)
T ss_pred hhh-hh----------------------------------------hhCCCcccccceeeeeeehhc-cccccchHHHhh
Confidence 442 22 223344444555566666555 444454421111
Q ss_pred ---CcCeEEEeccCCCcccccc-ccCCCccccccc-------------cCCCCCcceeeccCCCcccccccCCCCCCccc
Q 048135 1040 ---TLSRISIGKCENLVALPDR-MHNLSSLQELEI-------------CFPTSLTTLTIEDFNLYKPLIEWGLHKLTALR 1102 (1189)
Q Consensus 1040 ---~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l-------------~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~ 1102 (1189)
+|..|+.+. +.+..+|.. =.....|+.|++ .+...|+.|+++ .|.+.++|...+.++..|+
T Consensus 333 ~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs-yNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 333 LNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS-YNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred hhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec-ccccccCCHHHHhchHHhH
Confidence 244444433 333333311 122334444444 123455555555 6788889999999999999
Q ss_pred eEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCC-CCCC-CCcceee
Q 048135 1103 NLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPE-VGLP-SSLLQLY 1180 (1189)
Q Consensus 1103 ~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~-~sL~~L~ 1180 (1189)
+|+||| ++++.+|... .++..|++|...+| .+.++| .+..++.|+.+|++. +.+..+.- ...| ++|++|+
T Consensus 411 eL~LSG-NkL~~Lp~tv---a~~~~L~tL~ahsN-~l~~fP--e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 411 ELNLSG-NKLTTLPDTV---ANLGRLHTLRAHSN-QLLSFP--ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred HHhccc-chhhhhhHHH---HhhhhhHHHhhcCC-ceeech--hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceee
Confidence 999999 5899999776 67899999998777 788888 688999999999986 56665442 4456 8999999
Q ss_pred ecCCCCC
Q 048135 1181 IDGCPLL 1187 (1189)
Q Consensus 1181 i~~c~~L 1187 (1189)
++|++++
T Consensus 483 lSGN~~l 489 (1081)
T KOG0618|consen 483 LSGNTRL 489 (1081)
T ss_pred ccCCccc
Confidence 9999864
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=7.4e-23 Score=220.58 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=59.2
Q ss_pred CCCcCeEEEeccCCCcccc-ccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCc
Q 048135 1038 PNTLSRISIGKCENLVALP-DRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFP 1116 (1189)
Q Consensus 1038 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1116 (1189)
.++|++|++++ +.+++++ .++..|..|++|.+ +-|.++.+.+..|..+.+|++|+|++|.....+.
T Consensus 316 tqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnL------------s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 316 TQKLKELDLSS-NRITRLDEGSFRVLSQLEELNL------------SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred cccceeEeccc-cccccCChhHHHHHHHhhhhcc------------cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 33444444444 3344443 23444444555544 3444555555555556666666666554433343
Q ss_pred cccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCC
Q 048135 1117 QEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSF 1167 (1189)
Q Consensus 1117 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l 1167 (1189)
+...+|..+++|+.|++.+| +++++|...|..+++|+.|++.+| -|.++
T Consensus 383 Daa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N-aiaSI 431 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN-AIASI 431 (873)
T ss_pred cchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC-cceee
Confidence 33333444566666666555 556666555666666666666553 34444
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.5e-23 Score=224.04 Aligned_cols=174 Identities=17% Similarity=0.247 Sum_probs=110.3
Q ss_pred CCcceEEEeccCCCc--ccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCccc
Q 048135 523 FKKLRVLSLKSYHII--ELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLD 600 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 600 (1189)
++..|-.|+++|.++ .+|.++..+++++.|.|..+++..+|+.++.|.+|++|.+++| .+..+...++.|+.||.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHh
Confidence 445677777777765 5677777888888888888888888888888888888888877 5666666777778888887
Q ss_pred ccCCccc-ccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 601 ITDVHLI-KEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 601 l~~~~~~-~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
+.+|+.. ..+|..|-.|..|.+|+.... .-..++..|...++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShN-------------------------------------qL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHN-------------------------------------QLREVPTNLEYAKN 127 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchh-------------------------------------hhhhcchhhhhhcC
Confidence 7776522 346766666666666543110 01112333344455
Q ss_pred cceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccc
Q 048135 680 LKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREM 736 (1189)
Q Consensus 680 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~ 736 (1189)
+-.|.++.|.+.++|..+.- .+..|-.|+|++|. ++.+| .+..+.+|+.|.|+++
T Consensus 128 ~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred cEEEEcccCccccCCchHHH-hhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCC
Confidence 55666777777777754432 35556666666654 34444 3555666666666554
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.8e-21 Score=210.04 Aligned_cols=349 Identities=19% Similarity=0.220 Sum_probs=222.3
Q ss_pred cceEEEeccCCCccc-CccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCc-hhhhccccCCccccc
Q 048135 525 KLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWP-SKVMNLINLRHLDIT 602 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 602 (1189)
.-+.||+++|.+..+ +..|.++++|+.+++..|.++.+|...+...||+.|+|.+| .+..+- +++.-++.||.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 567799999999888 57789999999999999999999998888888999999998 455553 567889999999999
Q ss_pred CCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcce
Q 048135 603 DVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKE 682 (1189)
Q Consensus 603 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~ 682 (1189)
.|. +..+|..- +... .++++
T Consensus 158 rN~-is~i~~~s-------------------------------fp~~----------------------------~ni~~ 177 (873)
T KOG4194|consen 158 RNL-ISEIPKPS-------------------------------FPAK----------------------------VNIKK 177 (873)
T ss_pred hch-hhcccCCC-------------------------------CCCC----------------------------CCceE
Confidence 887 66665310 1112 23444
Q ss_pred EEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC--CCCcccCcceEeeccccCceEe-CccccCCCCCCCCCccc
Q 048135 683 LTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP--SLGLLCSLKALTIREMTELKII-GSEIYGDGCSKPFQSLE 759 (1189)
Q Consensus 683 L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp--~l~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~~~f~~L~ 759 (1189)
|.+++|.++.+...-.+ .+.+|..|.|+.|. +..+| .+..||.|+.|+|..+ .++.+ +..| .++++|+
T Consensus 178 L~La~N~It~l~~~~F~-~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltF------qgL~Sl~ 248 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFD-SLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTF------QGLPSLQ 248 (873)
T ss_pred Eeecccccccccccccc-ccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhh------cCchhhh
Confidence 44444444443222111 34455566665553 33444 4555666666666543 23333 2222 2255555
Q ss_pred eeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC----CCCCccEEEEeccCCcc---cccCCCCccce
Q 048135 760 TLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD----HLPSLKKLVISECAQFE---VSFASLPVLSD 832 (1189)
Q Consensus 760 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~----~l~~L~~L~l~~c~~~~---~~~~~l~~L~~ 832 (1189)
.|.+..... ....++. +-.+.++++|++..+ ++. .+.. ++..|+.|+++.+..-. ..++..++|++
T Consensus 249 nlklqrN~I---~kL~DG~--Fy~l~kme~l~L~~N-~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 249 NLKLQRNDI---SKLDDGA--FYGLEKMEHLNLETN-RLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE 321 (873)
T ss_pred hhhhhhcCc---ccccCcc--eeeecccceeecccc-hhh-hhhcccccccchhhhhccchhhhheeecchhhhccccee
Confidence 554433211 1111110 445667777777766 443 2221 45677777777665332 25677788888
Q ss_pred EEEecCCCce-----eecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccc----cCCC
Q 048135 833 LSIDGCKGLV-----CESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQE----VCFL 903 (1189)
Q Consensus 833 L~l~~~~~~~-----~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~----~~~l 903 (1189)
|+++.|.... +..+..|+.|.++.+. +.++.+ ..+..+.+|++|++++|..-..+.+ ..-+
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e---------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE---------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh---------hHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 8888876443 3445677777777654 222222 2577889999999999764433332 1228
Q ss_pred CCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeec
Q 048135 904 PILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRK 961 (1189)
Q Consensus 904 ~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 961 (1189)
++|+.|++.+ ++++.+|...+..+++|++|++.++.....-+...-+..|++|.+..
T Consensus 392 ~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 392 PSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred hhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence 9999999999 58999999888899999999999876544334333344788877765
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.4e-22 Score=216.41 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=64.0
Q ss_pred cCcccccEEeccccccc--cccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCCcccccCCCCCCCCCCCc
Q 048135 544 GRLMHLRYLDMSNTAIS--SLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDVHLIKEMPLGMEEWKCLQ 621 (1189)
Q Consensus 544 ~~l~~L~~L~L~~~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 621 (1189)
+-|+-.|-.|+++|.++ ..|.++..++.++.|-|..+ .+..+|+.++.|.+|+||.+++|+ +.++...++.|+.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhH
Confidence 44566788899999988 78999999999999999996 899999999999999999999998 555554455555554
Q ss_pred ee
Q 048135 622 TL 623 (1189)
Q Consensus 622 ~L 623 (1189)
.+
T Consensus 82 sv 83 (1255)
T KOG0444|consen 82 SV 83 (1255)
T ss_pred HH
Confidence 44
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=9.1e-14 Score=166.08 Aligned_cols=217 Identities=24% Similarity=0.310 Sum_probs=109.3
Q ss_pred CCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEee
Q 048135 881 TSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIR 960 (1189)
Q Consensus 881 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~ 960 (1189)
++|++|++++| .++.+|. .+++|+.|++++| .+..+|. ...+|+.|++++| .++.+|. .+++|+.|+++
T Consensus 242 ~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~N-~L~~Lp~----lp~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS 310 (788)
T PRK15387 242 PELRTLEVSGN-QLTSLPV--LPPGLLELSIFSN-PLTHLPA----LPSGLCKLWIFGN-QLTSLPV--LPPGLQELSVS 310 (788)
T ss_pred CCCcEEEecCC-ccCcccC--cccccceeeccCC-chhhhhh----chhhcCEEECcCC-ccccccc--cccccceeECC
Confidence 45555555554 3444442 2445555555554 3444443 1234555555553 2333432 23455555555
Q ss_pred cccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCCC
Q 048135 961 KCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPNT 1040 (1189)
Q Consensus 961 ~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~ 1040 (1189)
++ .++.+|.. ..+|..|++++|. ++.+|.. ..+|+.|++++| .++.+|. .+++
T Consensus 311 ~N-~L~~Lp~l-------------------p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~--lp~~ 363 (788)
T PRK15387 311 DN-QLASLPAL-------------------PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDN-QLASLPT--LPSE 363 (788)
T ss_pred CC-ccccCCCC-------------------cccccccccccCc-ccccccc---ccccceEecCCC-ccCCCCC--CCcc
Confidence 53 33333210 0123334444332 2234421 134556666554 3445543 3445
Q ss_pred cCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccc
Q 048135 1041 LSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEEL 1120 (1189)
Q Consensus 1041 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 1120 (1189)
|+.|++++ +.+..+|.. +++|+.|++++ |.++.+|. ..++|+.|++++| .+..+|.
T Consensus 364 L~~L~Ls~-N~L~~LP~l--------------~~~L~~LdLs~-N~Lt~LP~----l~s~L~~LdLS~N-~LssIP~--- 419 (788)
T PRK15387 364 LYKLWAYN-NRLTSLPAL--------------PSGLKELIVSG-NRLTSLPV----LPSELKELMVSGN-RLTSLPM--- 419 (788)
T ss_pred cceehhhc-cccccCccc--------------ccccceEEecC-CcccCCCC----cccCCCEEEccCC-cCCCCCc---
Confidence 55565555 344444431 12344444443 44555543 1356777777775 4666764
Q ss_pred cCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCC
Q 048135 1121 GMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKL 1164 (1189)
Q Consensus 1121 ~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l 1164 (1189)
.+.+|+.|++++| .++.+| ..+.++++|+.|++++|+.-
T Consensus 420 ---l~~~L~~L~Ls~N-qLt~LP-~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 420 ---LPSGLLSLSVYRN-QLTRLP-ESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ---chhhhhhhhhccC-cccccC-hHHhhccCCCeEECCCCCCC
Confidence 3456777777776 566777 56777777788888776543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=1e-13 Score=165.75 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=64.5
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccC
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITD 603 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 603 (1189)
..-.+|+++++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .++.+|.. ..+|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 457789999999999998885 4899999999999999863 688999999998 78888853 46788888888
Q ss_pred CcccccCCC
Q 048135 604 VHLIKEMPL 612 (1189)
Q Consensus 604 ~~~~~~~p~ 612 (1189)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 86 555554
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=3.1e-15 Score=155.32 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=82.0
Q ss_pred hhhhhhhcCCCcceEEEeccCCCccc-CccccCcccccEEeccc-ccccccccc-ccCCCCCcEEeccCccccccCchhh
Q 048135 514 MFLSDLLPKFKKLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSN-TAISSLPES-TCSLINLQTLLLRRCFYLMKWPSKV 590 (1189)
Q Consensus 514 ~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~-~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~i 590 (1189)
.+++..|+.+++||.|||++|.|+.| |+.|..+..|-.|-+-+ |+|+.+|+. |++|..||.|.+.-|..-......+
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 35667788888888888888888887 78888888776666655 788888875 6788888888888774333334557
Q ss_pred hccccCCcccccCCcccccCCC-CCCCCCCCceeCc
Q 048135 591 MNLINLRHLDITDVHLIKEMPL-GMEEWKCLQTLSN 625 (1189)
Q Consensus 591 ~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~ 625 (1189)
..|++|..|.+.+|. +..++. .+..+.++++++.
T Consensus 161 ~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HHhhhcchhcccchh-hhhhccccccchhccchHhh
Confidence 888888888888876 667776 4777777777653
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=2.4e-12 Score=155.44 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=35.6
Q ss_pred CCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeec
Q 048135 882 SPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRK 961 (1189)
Q Consensus 882 ~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 961 (1189)
.|+.|++++| .++.+|.. .+++|++|++++| .++.+|..+. .+|+.|++++|. +..+|.. ++.+|+.|++++
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~-l~~nL~~L~Ls~N-~LtsLP~~l~---~~L~~L~Ls~N~-L~~LP~~-l~s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNN-ELKSLPEN-LQGNIKTLYANSN-QLTSIPATLP---DTIQEMELSINR-ITELPER-LPSALQSLDLFH 271 (754)
T ss_pred CCcEEEecCC-CCCcCChh-hccCCCEEECCCC-ccccCChhhh---ccccEEECcCCc-cCcCChh-HhCCCCEEECcC
Confidence 4555555554 34444331 2345555555553 3455554332 345555555543 2333321 234455555553
Q ss_pred ccCcccc
Q 048135 962 CEKLKHL 968 (1189)
Q Consensus 962 c~~l~~~ 968 (1189)
++++.+
T Consensus 272 -N~L~~L 277 (754)
T PRK15370 272 -NKISCL 277 (754)
T ss_pred -CccCcc
Confidence 334433
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=1.9e-12 Score=156.19 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=68.1
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccC
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITD 603 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 603 (1189)
.+..+|+++++.++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++| .++.+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 457889999999999998774 589999999999999998765 58999999988 6888888664 4799999998
Q ss_pred CcccccCCCCC
Q 048135 604 VHLIKEMPLGM 614 (1189)
Q Consensus 604 ~~~~~~~p~~i 614 (1189)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 87 66777644
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=3.6e-12 Score=156.26 Aligned_cols=106 Identities=28% Similarity=0.328 Sum_probs=89.6
Q ss_pred CCCcceEEEeccCC--CcccCcc-ccCcccccEEecccc-ccccccccccCCCCCcEEeccCccccccCchhhhccccCC
Q 048135 522 KFKKLRVLSLKSYH--IIELPNS-IGRLMHLRYLDMSNT-AISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLR 597 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~--~~~lp~~-i~~l~~L~~L~L~~~-~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 597 (1189)
..+.|++|-+.++. +..++.. |..+++||+|||++| .+.+||++|++|.|||+|+++++ .+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 34479999999886 6677644 688999999999976 57899999999999999999997 7899999999999999
Q ss_pred cccccCCcccccCCCCCCCCCCCceeCceec
Q 048135 598 HLDITDVHLIKEMPLGMEEWKCLQTLSNFIV 628 (1189)
Q Consensus 598 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 628 (1189)
+|++..+.....+|..+..|.+|++|..+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeecc
Confidence 9999988867777666677999999976543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=9.7e-14 Score=127.16 Aligned_cols=159 Identities=26% Similarity=0.352 Sum_probs=100.8
Q ss_pred CCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccc
Q 048135 522 KFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDI 601 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 601 (1189)
.+.++..|-|++|.++.+|..|..+.+|++|++.+|.|+++|.+++.|++|++|+++-| .+..+|.+++.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 34556666677777777776777777777777777777777777777777777777665 56666777777777777776
Q ss_pred cCCccc-ccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCc
Q 048135 602 TDVHLI-KEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSL 680 (1189)
Q Consensus 602 ~~~~~~-~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L 680 (1189)
..|+.. ..+|..|-.|+ .|
T Consensus 110 tynnl~e~~lpgnff~m~------------------------------------------------------------tl 129 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMT------------------------------------------------------------TL 129 (264)
T ss_pred cccccccccCCcchhHHH------------------------------------------------------------HH
Confidence 665421 23443333332 34
Q ss_pred ceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccccCceEeCcc
Q 048135 681 KELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREMTELKIIGSE 745 (1189)
Q Consensus 681 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~~~l~~~~~~ 745 (1189)
+.|+++.+...-+|..++ .+++|+.|.+.++..+ ++| .++.+..|++|++.++ .+..++.+
T Consensus 130 ralyl~dndfe~lp~dvg--~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn-rl~vlppe 191 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDVG--KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN-RLTVLPPE 191 (264)
T ss_pred HHHHhcCCCcccCChhhh--hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc-eeeecChh
Confidence 444555566666777776 3777777777776543 455 6777778888888764 44555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=1.3e-13 Score=126.43 Aligned_cols=145 Identities=27% Similarity=0.288 Sum_probs=119.3
Q ss_pred hhhhhcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccc-cccCchhhhccc
Q 048135 516 LSDLLPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFY-LMKWPSKVMNLI 594 (1189)
Q Consensus 516 ~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~-l~~lp~~i~~L~ 594 (1189)
.+.-+..+.+|.+|++++|+++++|.+++.+++||.|++.-|++..+|..||.++-|++|||.+|.. -..+|..+.-|+
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 3344678899999999999999999999999999999999999999999999999999999998732 235899999999
Q ss_pred cCCcccccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccC
Q 048135 595 NLRHLDITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGML 674 (1189)
Q Consensus 595 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l 674 (1189)
.|+-|++++|. ..-+|..+++|++||.|...... -...+..+
T Consensus 128 tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-------------------------------------ll~lpkei 169 (264)
T KOG0617|consen 128 TLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-------------------------------------LLSLPKEI 169 (264)
T ss_pred HHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-------------------------------------hhhCcHHH
Confidence 99999999998 88899999999999998542110 01123344
Q ss_pred CCCCCcceEEEeeeCCCCCCCCCC
Q 048135 675 KSHTSLKELTIKCYGGTRFPSWVG 698 (1189)
Q Consensus 675 ~~~~~L~~L~l~~~~~~~~p~~~~ 698 (1189)
+.+..|++|++.|+..+.+|+.++
T Consensus 170 g~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHHHHhcccceeeecChhhh
Confidence 556788888888888877776554
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=9.6e-10 Score=142.98 Aligned_cols=272 Identities=13% Similarity=0.149 Sum_probs=168.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC-CcCHHHHHHHHHHHccCCCCC-------------CCChhH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE-DFDVLKITKAILESVTSSPSN-------------LKDLNQ 205 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-------------~~~~~~ 205 (1189)
+++.|+|++|.||||++.+.... ++.++|+++.. .-+...+...++..+...... ..+...
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~-----~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAG-----KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS 107 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh-----CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH
Confidence 45569999999999999987752 33689999864 446666767777666421111 012222
Q ss_pred HHHHHHHHHc--cCceEEEecCCCCCChhhHH-hhccccCCCCCCcEEEEEcCCchhhhc--c-CCCceEeCC----CCC
Q 048135 206 VQIQLEKAIA--GQKFLIVLDNVWSKNYGLWK-TLKSPFMAGTPGSKIIVTTRSVDVALT--L-GPIDYYNLE----LLS 275 (1189)
Q Consensus 206 ~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivTtr~~~v~~~--~-~~~~~~~l~----~L~ 275 (1189)
....+...+. +.+++||+||+..-+..... .+...++...++.++|||||....... . ......++. +|+
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~ 187 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFD 187 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCC
Confidence 3333333332 67899999999654323323 333333334456788899997432111 0 112345555 899
Q ss_pred hhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHhhhccCcCC--CCChHHH
Q 048135 276 DDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRDDEWQGILKSRIWDLSE--ESDILPV 353 (1189)
Q Consensus 276 ~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~~~w~~~l~~~~~~~~~--~~~i~~~ 353 (1189)
.+|+.++|...... ... .+...+|.+.|+|.|+++..++..+....... .... +.+.. ...+...
T Consensus 188 ~~e~~~ll~~~~~~---~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~ 254 (903)
T PRK04841 188 HQEAQQFFDQRLSS---PIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSA----RRLAGINASHLSDY 254 (903)
T ss_pred HHHHHHHHHhccCC---CCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhh----HhhcCCCchhHHHH
Confidence 99999999875421 111 23467899999999999999998775443210 0011 11111 2345555
Q ss_pred HHH-hHhcCchhHHHHHhHhccCCCCceechHHHHHHHHHcCCcccCccchhHHHHHHHHHHHHHhcccccc-ccCCCCc
Q 048135 354 LRL-SYHHLPSHLKRCFSYSAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMEDLGHKYFRDLLSRSIFQK-SCNNSSK 431 (1189)
Q Consensus 354 l~~-sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~~~~~ 431 (1189)
+.- -|+.||++.+..++..|+++ .++.+. .. .+... +.+...+++|.+.+++.. .+.+...
T Consensus 255 l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l-~~-----~l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~ 317 (903)
T PRK04841 255 LVEEVLDNVDLETRHFLLRCSVLR---SMNDAL-IV-----RVTGE--------ENGQMRLEELERQGLFIQRMDDSGEW 317 (903)
T ss_pred HHHHHHhcCCHHHHHHHHHhcccc---cCCHHH-HH-----HHcCC--------CcHHHHHHHHHHCCCeeEeecCCCCE
Confidence 443 48899999999999999996 344332 22 11111 124667899999998753 3334457
Q ss_pred eEeChhHHHHHHHhh
Q 048135 432 FLMHDLVNDLAQWVS 446 (1189)
Q Consensus 432 ~~mHdlv~d~~~~i~ 446 (1189)
|..|++++++.+...
T Consensus 318 yr~H~L~r~~l~~~l 332 (903)
T PRK04841 318 FRYHPLFASFLRHRC 332 (903)
T ss_pred EehhHHHHHHHHHHH
Confidence 889999999997654
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=1.6e-08 Score=110.69 Aligned_cols=180 Identities=19% Similarity=0.170 Sum_probs=113.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH-----Hc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA-----IA 215 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~ 215 (1189)
.+.|+|++|+||||+|+.+++......+ ..+|+ +....+..+++..+...++.+... .+.......+.+. ..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHhC
Confidence 3569999999999999999986442222 12343 333457788889999888655332 2222233333332 26
Q ss_pred cCceEEEecCCCCCChhhHHhhccccC---CCCCCcEEEEEcCCchhhhccC----------CCceEeCCCCChhhHHHH
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFM---AGTPGSKIIVTTRSVDVALTLG----------PIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~---~~~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~~~~~l 282 (1189)
++++++|+||+|.-....++.+..... .......|++|.... ...... ....+++++++.+|..++
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 788999999998876666776653222 112223445555432 211111 124688999999999999
Q ss_pred HHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 048135 283 FEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLL 324 (1189)
Q Consensus 283 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L 324 (1189)
+...+...+......--.+..+.|++.++|.|..|..++..+
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 887764322111111224678899999999999999888776
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.90 E-value=3.6e-07 Score=106.08 Aligned_cols=293 Identities=14% Similarity=0.131 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCc
Q 048135 102 GMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDF 180 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~ 180 (1189)
+-+.+++++...+...... ...+.+.|+|++|+|||++++.++++..... .-..++|......
T Consensus 34 ~Re~e~~~l~~~l~~~~~~----------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 34 HREEQIEELAFALRPALRG----------------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CHHHHHHHHHHHHHHHhCC----------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 3456777777776543221 0112345999999999999999998643332 2235566666666
Q ss_pred CHHHHHHHHHHHccCCCC--CCCChhHHHHHHHHHHc--cCceEEEecCCCCCC----hhhHHhhccccCCCCCCcE--E
Q 048135 181 DVLKITKAILESVTSSPS--NLKDLNQVQIQLEKAIA--GQKFLIVLDNVWSKN----YGLWKTLKSPFMAGTPGSK--I 250 (1189)
Q Consensus 181 ~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~l~~~~~gs~--i 250 (1189)
+...++..++.++..... ...+.++....+.+.++ ++..+||||+++.-. .+.+..+...... ..+++ |
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~v 176 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGV 176 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEE
Confidence 788899999999875321 22345666677777775 456899999996521 2234444332222 12333 5
Q ss_pred EEEcCCchhhhccC-------CCceEeCCCCChhhHHHHHHHhhccC--CCcccchhHHHHHHHHHHHhCCChHHHHHHH
Q 048135 251 IVTTRSVDVALTLG-------PIDYYNLELLSDDDCWSIFEKHAFEN--RDASAHQNLELIHAKVVEKCKGLPQAAANLG 321 (1189)
Q Consensus 251 ivTtr~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~--~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g 321 (1189)
|.++...++..... ....+.+++++.++..+++...+-.. .....++.++.+++......|..+.|+.++-
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666554433221 12467899999999999988876321 1112223334444444444566778877764
Q ss_pred hhh--c---CCC--ChhHHHHHHhhhccCcCCCCChHHHHHHhHhcCchhHHHHHhHhccCCC--CceechHHHHH--HH
Q 048135 322 GLL--C---CKQ--RDDEWQGILKSRIWDLSEESDILPVLRLSYHHLPSHLKRCFSYSAIFPK--GYEFEEMELIL--LW 390 (1189)
Q Consensus 322 ~~L--~---~~~--~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~--~~~~~~~~li~--~w 390 (1189)
... . +.. +.+.++.+.+.. -.....-.+..||.+.|..+..++-.-+ ...+....+.. ..
T Consensus 257 ~a~~~a~~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~ 327 (394)
T PRK00411 257 RAGLIAEREGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKE 327 (394)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 322 1 111 234455444432 1223455688999998887766653321 12344444443 22
Q ss_pred HHcCCcccCccchhHHHHHHHHHHHHHhcccccc
Q 048135 391 MADGLIQQSEDNKQMEDLGHKYFRDLLSRSIFQK 424 (1189)
Q Consensus 391 ia~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 424 (1189)
+++.+-.... -+.....|+++|...+++..
T Consensus 328 l~~~~~~~~~----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 328 LCEELGYEPR----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHHHcCCCcC----cHHHHHHHHHHHHhcCCeEE
Confidence 3322211110 11234567888888888875
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.89 E-value=5.2e-11 Score=124.45 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=68.4
Q ss_pred CCcEEEeccCCCcccccc--cCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCC--CCCcceE
Q 048135 882 SPKKLCIENCQRLVSFQE--VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQL--LLPLKKL 957 (1189)
Q Consensus 882 ~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L 957 (1189)
.-..+++..| .++.+|. ...+++|+.|+++++ .++.|-+..+..+++|..|-+-+.++++.++.+.+ +.+|+.|
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4455566654 4555554 233666777777763 55555555555666666666666666666665532 3344444
Q ss_pred EeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCC
Q 048135 958 QIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCS 1027 (1189)
Q Consensus 958 ~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 1027 (1189)
.+.-|. +..+ ..-.+..++++..|.+.++..-..--..+..+.+++.+++..|+
T Consensus 146 llNan~-i~Ci---------------r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 146 LLNANH-INCI---------------RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcChhh-hcch---------------hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 443321 1111 11122334556666666554433223356667777777776665
No 27
>PF05729 NACHT: NACHT domain
Probab=98.81 E-value=1.4e-08 Score=102.02 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=85.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccC-----cCceEEEEecCCcCHH---HHHHHHHHHccCCCCCCCChhHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEG-----FNPKAWVCVSEDFDVL---KITKAILESVTSSPSNLKDLNQVQIQLE 211 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~-----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 211 (1189)
|++.|+|.+|+||||+++.++.+..... +...+|+......... .+...+..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 4566999999999999999887654333 3355666655443322 34444433332211 11111 111
Q ss_pred HH-HccCceEEEecCCCCCCh--h-----hHHhhc-cccCC-CCCCcEEEEEcCCchh---hhccCCCceEeCCCCChhh
Q 048135 212 KA-IAGQKFLIVLDNVWSKNY--G-----LWKTLK-SPFMA-GTPGSKIIVTTRSVDV---ALTLGPIDYYNLELLSDDD 278 (1189)
Q Consensus 212 ~~-l~~~~~LlvlDdv~~~~~--~-----~~~~l~-~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~~ 278 (1189)
.. -+.++++||+|++++-.. . .+..+. ..+.. ..++.+||||+|.... .........+++.++++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 11 257899999999965322 1 122222 22222 2468999999998766 3333444689999999999
Q ss_pred HHHHHHHh
Q 048135 279 CWSIFEKH 286 (1189)
Q Consensus 279 ~~~lf~~~ 286 (1189)
..+++.++
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99999776
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.78 E-value=6e-10 Score=125.82 Aligned_cols=88 Identities=23% Similarity=0.198 Sum_probs=49.4
Q ss_pred hhhcCCCcceEEEeccCCCc-----ccCccccCcccccEEecccccccc-------ccccccCCCCCcEEeccCcccccc
Q 048135 518 DLLPKFKKLRVLSLKSYHII-----ELPNSIGRLMHLRYLDMSNTAISS-------LPESTCSLINLQTLLLRRCFYLMK 585 (1189)
Q Consensus 518 ~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~i~~-------LP~~i~~L~~L~~L~L~~~~~l~~ 585 (1189)
..+..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34455556777777777663 345555566667777776665442 234455566666666666533333
Q ss_pred Cchhhhcccc---CCcccccCCc
Q 048135 586 WPSKVMNLIN---LRHLDITDVH 605 (1189)
Q Consensus 586 lp~~i~~L~~---L~~L~l~~~~ 605 (1189)
.+..+..+.+ |++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc
Confidence 4444444444 6666666554
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.69 E-value=3.9e-08 Score=107.88 Aligned_cols=163 Identities=21% Similarity=0.349 Sum_probs=94.4
Q ss_pred cccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCcccc
Q 048135 988 VSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSSLQE 1067 (1189)
Q Consensus 988 l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 1067 (1189)
+..|+.+..|++++| .++++|. --++|++|.+++|..++.+|. .+|++|+.|.+++|..+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccccc------cce
Confidence 444677777777777 6677773 124688888888888888774 45678888888888777777643 333
Q ss_pred ccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCc--ccCccccccCCCCCccceeecccCCCCcccCcC
Q 048135 1068 LEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDA--VSFPQEELGMMLPTSLTKLAIAKFPELKHLSSK 1145 (1189)
Q Consensus 1068 L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l--~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 1145 (1189)
|++. ...++.+..+| ++|+.|.+.++... ..+|. ..|++|+.|++++|..+ .+| .
T Consensus 117 L~L~---------~n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~-----~LPsSLk~L~Is~c~~i-~LP-~ 173 (426)
T PRK15386 117 LEIK---------GSATDSIKNVP-------NGLTSLSINSYNPENQARIDN-----LISPSLKTLSLTGCSNI-ILP-E 173 (426)
T ss_pred EEeC---------CCCCcccccCc-------chHhheecccccccccccccc-----ccCCcccEEEecCCCcc-cCc-c
Confidence 4331 01122223333 35666666543211 11221 25677777777777544 234 3
Q ss_pred CCCCCCccCceeeccCCCC-CCCCCCCCCCCcceeeecCCCCC
Q 048135 1146 GFRNLTSLDLLRIRNCPKL-TSFPEVGLPSSLLQLYIDGCPLL 1187 (1189)
Q Consensus 1146 ~l~~l~~L~~L~l~~c~~l-~~lp~~~~~~sL~~L~i~~c~~L 1187 (1189)
.+. .+|+.|.++.+... ..++....|+++ .|++.+|-++
T Consensus 174 ~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 174 KLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred ccc--ccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 343 57777777654211 123333455666 7777777554
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=1.3e-10 Score=122.72 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=35.0
Q ss_pred CCCCccceEEEcccCCcccC-----ccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCC
Q 048135 1096 HKLTALRNLSIGGCLDAVSF-----PQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTS 1166 (1189)
Q Consensus 1096 ~~l~~L~~L~l~~c~~l~~l-----~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1166 (1189)
.+++.|+.|.+++|..+..- .... .....|..|.+++|+.+..-.-..+..+++|+.+++.+|..+..
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~---c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSS---CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhcc---ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 34556666666665444332 1111 23355666666666655432223345556666666666665554
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.67 E-value=2.8e-09 Score=120.34 Aligned_cols=113 Identities=21% Similarity=0.137 Sum_probs=74.7
Q ss_pred cCCCCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCCCcc-------cCccccCcccccEEeccccccc
Q 048135 488 FPEVECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHIIE-------LPNSIGRLMHLRYLDMSNTAIS 560 (1189)
Q Consensus 488 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-------lp~~i~~l~~L~~L~L~~~~i~ 560 (1189)
+..+.+++.+........ ......+...+...+.|+.|+++++.+.. ++..+.++.+|++|++++|.+.
T Consensus 19 ~~~l~~L~~l~l~~~~l~----~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLG----EEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHhhccEEeecCCCCc----HHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 344555666655443210 01112344556677889999998887652 3456777889999999998876
Q ss_pred -cccccccCCCC---CcEEeccCccccc-----cCchhhhcc-ccCCcccccCCc
Q 048135 561 -SLPESTCSLIN---LQTLLLRRCFYLM-----KWPSKVMNL-INLRHLDITDVH 605 (1189)
Q Consensus 561 -~LP~~i~~L~~---L~~L~L~~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~ 605 (1189)
..+..+..+.+ |++|++++|. +. .++..+..+ ++|+.|++++|.
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 34555555555 9999999884 33 234456667 889999999887
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.65 E-value=4.6e-10 Score=118.69 Aligned_cols=232 Identities=17% Similarity=0.203 Sum_probs=117.5
Q ss_pred eeEEEecCCCCCCCCC---CCCcccCcceEeeccccCceEeCccccCCCCCCCCCccceeeccCcccccccCcCCccccc
Q 048135 705 IVMITLESCTNCRSLP---SLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLETLCFRDLQEWELWDPIGKNEYV 781 (1189)
Q Consensus 705 L~~L~l~~~~~~~~lp---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 781 (1189)
|+.|.+.+|.....-+ .....|+++.|.+.+|..++...-.-.+ ..+++|+.|.+..|+.++....... .
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~l---a 212 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYL---A 212 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHH---H
Confidence 4455555554322221 1234566666666666543322111111 2356677777777666654443322 4
Q ss_pred ccCCcccEEeecCCCCccC----CCCCCCCCccEEEEeccCCcccc-cCCCCccceEEEecCCCceeecccceeEEEEec
Q 048135 782 ESFPLLRELSIVKCPKLSG----RLPDHLPSLKKLVISECAQFEVS-FASLPVLSDLSIDGCKGLVCESFQKVEYLKVVR 856 (1189)
Q Consensus 782 ~~~~~L~~L~l~~c~~L~~----~~p~~l~~L~~L~l~~c~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~ 856 (1189)
..+|+|++++++.|+.+.+ .+..+...++.+...||...+.. +... -...+.+..+++..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~---------------~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKA---------------AAYCLEILKLNLQH 277 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHH---------------hccChHhhccchhh
Confidence 5678888888888877764 12223344555545555444321 0000 01112233333444
Q ss_pred cchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccc---cCCCCCccEEEEecCCCCCCCc-cccccCCCccc
Q 048135 857 CEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQE---VCFLPILGELEIKNCSALKFLP-EGMKHNNVCLE 932 (1189)
Q Consensus 857 ~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~c~~l~~lp-~~~~~~~~~L~ 932 (1189)
|..+++. .+...-..+..|+.|+.++|..+++.+. ....++|+.|.++.|..++..- ..+..+.+.|+
T Consensus 278 c~~lTD~--------~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 278 CNQLTDE--------DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hccccch--------HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 4433321 1111223455667777777766555432 2335677777777776655432 22334667777
Q ss_pred eEEEccCCCccccc---ccCCCCCcceEEeecccCcc
Q 048135 933 CLLIEGCNSLKFVV---KGQLLLPLKKLQIRKCEKLK 966 (1189)
Q Consensus 933 ~L~l~~c~~l~~~~---~~~~~~~L~~L~l~~c~~l~ 966 (1189)
.+++.+|.....-. ....++.|+.|.+++|..++
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence 77777776554321 12345677888888776554
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.63 E-value=2.3e-06 Score=95.80 Aligned_cols=247 Identities=17% Similarity=0.144 Sum_probs=130.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC----CCCCh-hHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS----NLKDL-NQVQIQLEKAIA 215 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~-~~~~~~l~~~l~ 215 (1189)
.+.|+|++|+||||+|+.+.+..... + .++... .......+..++..+....- +.... ....+.+...+.
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~-~---~~~~~~-~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e 127 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVN-I---RITSGP-ALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAME 127 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCC-e---EEEecc-cccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHH
Confidence 45699999999999999998854322 1 111111 11112223333333322110 00110 112334455556
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhccC--CCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLG--PIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+.+..+|+|+..+.. .+...++ +.+-|..|||...+..... ....+++++++.++..+++.+.+...+..
T Consensus 128 ~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~ 199 (328)
T PRK00080 128 DFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE 199 (328)
T ss_pred hcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 666667776653321 1111122 2455666777554433221 12468999999999999999887543322
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHhhhccCcCC--CCChHHHHHHhHhcCchhHHHHHh-
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRDDEWQGILKSRIWDLSE--ESDILPVLRLSYHHLPSHLKRCFS- 370 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~~~w~~~l~~~~~~~~~--~~~i~~~l~~sy~~L~~~~k~~fl- 370 (1189)
. -.+....|++.|+|.|-.+..+...+ ..|...... ..... -......+...|..|++..+..+.
T Consensus 200 ~----~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~ 267 (328)
T PRK00080 200 I----DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRT 267 (328)
T ss_pred c----CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHH
Confidence 1 13467899999999996554444332 122221111 00000 122334456677889888888775
Q ss_pred HhccCCCCceechHHHHHHHHHcCCcccCccchhHHHHHHHHHH-HHHhccccccc
Q 048135 371 YSAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMEDLGHKYFR-DLLSRSIFQKS 425 (1189)
Q Consensus 371 ~~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 425 (1189)
....|+.+ .+..+.+...+ -. .. +.+++.++ .|++.++++..
T Consensus 268 ~~~~~~~~-~~~~~~~a~~l-----g~---~~----~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 268 IIEKFGGG-PVGLDTLAAAL-----GE---ER----DTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHcCCC-ceeHHHHHHHH-----CC---Cc----chHHHHhhHHHHHcCCcccC
Confidence 66667655 45555443322 11 11 22333344 78888888643
No 34
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.63 E-value=1.3e-05 Score=92.04 Aligned_cols=295 Identities=14% Similarity=0.086 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCcccc--Cc---CceEEEEe
Q 048135 102 GMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVE--GF---NPKAWVCV 176 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~--~f---~~~~wv~~ 176 (1189)
+-+.+++++...+...... .....+.|+|++|+|||++++++++..... .. -..+||..
T Consensus 19 gRe~e~~~l~~~l~~~~~~----------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRG----------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CcHHHHHHHHHHHHHHHcC----------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3456777777776543221 111235699999999999999998753211 01 13567777
Q ss_pred cCCcCHHHHHHHHHHHccC---CCC-CCCChhHHHHHHHHHHc--cCceEEEecCCCCCC---hhhHHhhcccc-CCCC-
Q 048135 177 SEDFDVLKITKAILESVTS---SPS-NLKDLNQVQIQLEKAIA--GQKFLIVLDNVWSKN---YGLWKTLKSPF-MAGT- 245 (1189)
Q Consensus 177 ~~~~~~~~~~~~i~~~l~~---~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~---~~~~~~l~~~l-~~~~- 245 (1189)
....+...++..|++++.. ... ...+..+....+.+.+. +++++||||+++.-. .+....+.... ....
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~ 162 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLD 162 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCC
Confidence 6666778899999998842 211 12234455555666653 567899999996531 11222332221 1111
Q ss_pred -CCcEEEEEcCCchhhhccC-------CCceEeCCCCChhhHHHHHHHhhccC-CCcccchhHHHHHHHHHHHhCCChH-
Q 048135 246 -PGSKIIVTTRSVDVALTLG-------PIDYYNLELLSDDDCWSIFEKHAFEN-RDASAHQNLELIHAKVVEKCKGLPQ- 315 (1189)
Q Consensus 246 -~gs~iivTtr~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~c~g~Pl- 315 (1189)
....+|.+|.......... ....+.+++.+.+|..+++..++-.. ......++..+...+++....|.|-
T Consensus 163 ~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 163 NAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 2334555555443322111 12468899999999999998876311 1111223333455567777788884
Q ss_pred HHHHHHhhh--c---CC--CChhHHHHHHhhhccCcCCCCChHHHHHHhHhcCchhHHHHHhHhccCC--CCceechHHH
Q 048135 316 AAANLGGLL--C---CK--QRDDEWQGILKSRIWDLSEESDILPVLRLSYHHLPSHLKRCFSYSAIFP--KGYEFEEMEL 386 (1189)
Q Consensus 316 ai~~~g~~L--~---~~--~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp--~~~~~~~~~l 386 (1189)
|+.++-... . +. -+.+..+.+.+.. -.....-++..||.+.|..+..++..- .+..+....+
T Consensus 243 al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~ 313 (365)
T TIGR02928 243 AIDLLRVAGEIAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEV 313 (365)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 333332211 1 11 1123333333321 113344567799998887666654321 2334555555
Q ss_pred HHHHH--HcCCcccCccchhHHHHHHHHHHHHHhccccccc
Q 048135 387 ILLWM--ADGLIQQSEDNKQMEDLGHKYFRDLLSRSIFQKS 425 (1189)
Q Consensus 387 i~~wi--a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 425 (1189)
...+- ++.+-.. ...+.....++..|...+++...
T Consensus 314 ~~~y~~~~~~~~~~----~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 314 YEVYKEVCEDIGVD----PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHHhcCCC----CCcHHHHHHHHHHHHhcCCeEEE
Confidence 55221 2211101 11224456778888888888764
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.59 E-value=2.4e-09 Score=117.45 Aligned_cols=173 Identities=25% Similarity=0.350 Sum_probs=128.8
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
+..|-.|..|.|..|.+..+|..++++..|.||||+.|.++.+|..++.|+ |+.|.+++| +++.+|..|+.+..|.+|
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHh
Confidence 344556778888888899999999999999999999999999999888876 889999887 788999999988999999
Q ss_pred cccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 600 DITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
+.+.|. +..+|..++.|.+|+.|..... +| ...++.+. .-.
T Consensus 172 d~s~ne-i~slpsql~~l~slr~l~vrRn----------------------~l---------------~~lp~El~-~Lp 212 (722)
T KOG0532|consen 172 DVSKNE-IQSLPSQLGYLTSLRDLNVRRN----------------------HL---------------EDLPEELC-SLP 212 (722)
T ss_pred hhhhhh-hhhchHHhhhHHHHHHHHHhhh----------------------hh---------------hhCCHHHh-CCc
Confidence 998887 8888888888888887743111 11 11222333 225
Q ss_pred cceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC----CCCcccCcceEeeccc
Q 048135 680 LKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP----SLGLLCSLKALTIREM 736 (1189)
Q Consensus 680 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp----~l~~l~~L~~L~L~~~ 736 (1189)
|..|++++|++..+|-.+. .+..|+.|.|.+|+. ++.| .-|...-.++|+..-|
T Consensus 213 Li~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeecccCceeecchhhh--hhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence 7788888888888887765 488889999988763 3333 2344445566666655
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=3.7e-08 Score=114.47 Aligned_cols=178 Identities=29% Similarity=0.380 Sum_probs=128.9
Q ss_pred cCCCcceEEEeccCCCcccCccccCcc-cccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 521 PKFKKLRVLSLKSYHIIELPNSIGRLM-HLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 521 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
..++.+..|++.++.+.++|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 345789999999999999999888885 999999999999999988999999999999998 789999988899999999
Q ss_pred cccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 600 DITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
++++|. +..+|..++.+..|++|..-... ....+..+..+.+
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-------------------------------------~~~~~~~~~~~~~ 233 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNS-------------------------------------IIELLSSLSNLKN 233 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCc-------------------------------------ceecchhhhhccc
Confidence 999998 88888876666667766431110 0011122233344
Q ss_pred cceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccccCce
Q 048135 680 LKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMTELK 740 (1189)
Q Consensus 680 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~ 740 (1189)
+..+.+.++....+|.+++ .+++++.|++++|. ...++.++.+.+|+.|++++.....
T Consensus 234 l~~l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 234 LSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccccCCceeeeccchhc--cccccceecccccc-ccccccccccCccCEEeccCccccc
Confidence 4444455555555555554 35667777777664 3445557777777777777654433
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=1.8e-07 Score=102.79 Aligned_cols=137 Identities=31% Similarity=0.511 Sum_probs=96.5
Q ss_pred CCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccc
Q 048135 1013 INLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIE 1092 (1189)
Q Consensus 1013 ~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~ 1092 (1189)
..+.+++.|++++| .++++| .+|++|++|.+++|+.++.+|..+ +++|+.|.+++|..+..+|
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L-------------P~nLe~L~Ls~Cs~L~sLP- 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI-------------PEGLEKLTVCHCPEISGLP- 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh-------------hhhhhheEccCcccccccc-
Confidence 34688999999999 799998 588899999999999999888643 3445555556666665555
Q ss_pred cCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCC--cccCcCCCCCCCccCceeeccCCCCCCCCCC
Q 048135 1093 WGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPEL--KHLSSKGFRNLTSLDLLRIRNCPKLTSFPEV 1170 (1189)
Q Consensus 1093 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~ 1170 (1189)
++|+.|++++ .....++ ..|++|+.|.+.++... ..+| ..+. ++|++|++++|..+. +|.
T Consensus 112 ------~sLe~L~L~~-n~~~~L~------~LPssLk~L~I~~~n~~~~~~lp-~~LP--sSLk~L~Is~c~~i~-LP~- 173 (426)
T PRK15386 112 ------ESVRSLEIKG-SATDSIK------NVPNGLTSLSINSYNPENQARID-NLIS--PSLKTLSLTGCSNII-LPE- 173 (426)
T ss_pred ------cccceEEeCC-CCCcccc------cCcchHhheeccccccccccccc-cccC--CcccEEEecCCCccc-Ccc-
Confidence 3588888875 3333333 25578889988654322 1122 1111 789999999998663 453
Q ss_pred CCCCCcceeeecCC
Q 048135 1171 GLPSSLLQLYIDGC 1184 (1189)
Q Consensus 1171 ~~~~sL~~L~i~~c 1184 (1189)
++|.+|+.|.++.+
T Consensus 174 ~LP~SLk~L~ls~n 187 (426)
T PRK15386 174 KLPESLQSITLHIE 187 (426)
T ss_pred cccccCcEEEeccc
Confidence 47889999999875
No 38
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.57 E-value=5.1e-06 Score=92.59 Aligned_cols=246 Identities=18% Similarity=0.088 Sum_probs=128.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC----CCCC-hhHHHHHHHHHHcc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS----NLKD-LNQVQIQLEKAIAG 216 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~-~~~~~~~l~~~l~~ 216 (1189)
+.++|++|+|||++|+++.+..... + ..+.......... +...+..+....- +... ....++.+...+.+
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~~~-~---~~~~~~~~~~~~~-l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~ 107 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVN-L---KITSGPALEKPGD-LAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMED 107 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC-E---EEeccchhcCchh-HHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhh
Confidence 5699999999999999998753321 1 1111111111111 2222333322110 0000 01233445566666
Q ss_pred CceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhccC--CCceEeCCCCChhhHHHHHHHhhccCCCcc
Q 048135 217 QKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLG--PIDYYNLELLSDDDCWSIFEKHAFENRDAS 294 (1189)
Q Consensus 217 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~ 294 (1189)
.+..+|+|+..+. ..| ...++ +.+-|..||+...+..... ....+++++++.+|..+++.+.+...+...
T Consensus 108 ~~~~~v~~~~~~~--~~~---~~~~~---~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~ 179 (305)
T TIGR00635 108 FRLDIVIGKGPSA--RSV---RLDLP---PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEI 179 (305)
T ss_pred hheeeeeccCccc--cce---eecCC---CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc
Confidence 6777777776443 111 12222 2455666777654433211 124689999999999999998875332211
Q ss_pred cchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHhhhccCcCC--CCChHHHHHHhHhcCchhHHHHHh-H
Q 048135 295 AHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRDDEWQGILKSRIWDLSE--ESDILPVLRLSYHHLPSHLKRCFS-Y 371 (1189)
Q Consensus 295 ~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~~~w~~~l~~~~~~~~~--~~~i~~~l~~sy~~L~~~~k~~fl-~ 371 (1189)
-.+....|++.|+|.|-.+..++..+ |............. -......+...|..++++.+..+. .
T Consensus 180 ----~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al 247 (305)
T TIGR00635 180 ----EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVL 247 (305)
T ss_pred ----CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 13456789999999997665554432 22111000000000 011222355678889888887666 5
Q ss_pred hccCCCCceechHHHHHHHHHcCCcccCccchhHHHHHHHHHH-HHHhccccccc
Q 048135 372 SAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMEDLGHKYFR-DLLSRSIFQKS 425 (1189)
Q Consensus 372 ~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 425 (1189)
++.+..+ .+....+.... -. ....+...++ .|+++++++..
T Consensus 248 ~~~~~~~-~~~~~~ia~~l-----g~-------~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 248 IEQFQGG-PVGLKTLAAAL-----GE-------DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHhCCC-cccHHHHHHHh-----CC-------CcchHHHhhhHHHHHcCCcccC
Confidence 5666533 34433332211 11 1123455566 69999999753
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=8.8e-08 Score=93.94 Aligned_cols=78 Identities=32% Similarity=0.408 Sum_probs=20.8
Q ss_pred cceEEEeccCCCcccCcccc-CcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhh-hccccCCccccc
Q 048135 525 KLRVLSLKSYHIIELPNSIG-RLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKV-MNLINLRHLDIT 602 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~ 602 (1189)
.+|.|+|+++.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .++.++..+ ..+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECc
Confidence 4566666666666552 344 4566666666666666664 3556666666666666 455555444 246666666666
Q ss_pred CCc
Q 048135 603 DVH 605 (1189)
Q Consensus 603 ~~~ 605 (1189)
+|.
T Consensus 97 ~N~ 99 (175)
T PF14580_consen 97 NNK 99 (175)
T ss_dssp TS-
T ss_pred CCc
Confidence 665
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.48 E-value=6.2e-07 Score=94.28 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=92.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
..|+|..|+|||+||+++++....+ ...+.|+.+... ..... .+.+.++ +.-+|
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~~dlL 95 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKS---QYFSP---------------------AVLENLE-QQDLV 95 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHh---hhhhH---------------------HHHhhcc-cCCEE
Confidence 3599999999999999999853222 334566655311 00000 1111222 23489
Q ss_pred EecCCCCCC-hhhHHh-hccccCCC-CCCcEEEEEcCC----------chhhhccCCCceEeCCCCChhhHHHHHHHhhc
Q 048135 222 VLDNVWSKN-YGLWKT-LKSPFMAG-TPGSKIIVTTRS----------VDVALTLGPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 222 vlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iivTtr~----------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
|+||+|... ...|+. +...+... ..|..|||+|.+ +++...+.....++++++++++.++++.+.++
T Consensus 96 ilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 96 CLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred EEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 999998632 244553 22222211 235566554443 34555555557899999999999999999987
Q ss_pred cCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 048135 289 ENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLL 324 (1189)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L 324 (1189)
..+-.. + +++..-|++++.|..-++..+-..|
T Consensus 176 ~~~l~l-~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 176 QRGIEL-S---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HcCCCC-C---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 543211 1 4566788888888776665444333
No 41
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.46 E-value=2.1e-06 Score=100.23 Aligned_cols=277 Identities=15% Similarity=0.154 Sum_probs=173.0
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCCCCC-------------CCChh
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSSPSN-------------LKDLN 204 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-------------~~~~~ 204 (1189)
.|.+.|..++|.||||++.+... +...=..+.|.+.++. -+...+.+.++..+.....+ ..+..
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~--~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~ 114 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRE--LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLE 114 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHH--hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHH
Confidence 35566999999999999988864 2222345899998754 57788888888887743321 12333
Q ss_pred HHHHHHHHHHc--cCceEEEecCCCCCC-hhhHHhhccccCCCCCCcEEEEEcCCchhhhcc---CCCceEeCC----CC
Q 048135 205 QVQIQLEKAIA--GQKFLIVLDNVWSKN-YGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL---GPIDYYNLE----LL 274 (1189)
Q Consensus 205 ~~~~~l~~~l~--~~~~LlvlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~---~~~~~~~l~----~L 274 (1189)
.+...+...+. .++..+||||-.--. +..-..+...+....++-..|||||+..-.... -.....++. .+
T Consensus 115 ~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf 194 (894)
T COG2909 115 SLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRF 194 (894)
T ss_pred HHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcC
Confidence 34444444443 468899999974322 122223333344445678999999986432211 112234443 47
Q ss_pred ChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHhhhccCcCCCCChHHH-
Q 048135 275 SDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRDDEWQGILKSRIWDLSEESDILPV- 353 (1189)
Q Consensus 275 ~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~i~~~- 353 (1189)
+.+|+-++|..... .+-+ +.-.+.+.+...|-+-|+..++=.++.+.+.+.-...+... ...+..-
T Consensus 195 ~~eE~~~fl~~~~~---l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~------~~~l~dYL 261 (894)
T COG2909 195 DTEEAAAFLNDRGS---LPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGA------ASHLSDYL 261 (894)
T ss_pred ChHHHHHHHHHcCC---CCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccch------HHHHHHHH
Confidence 89999999988641 1111 23467899999999999999998887443332222211100 0111111
Q ss_pred HHHhHhcCchhHHHHHhHhccCCCCceechHHHHHHHHHcCCcccCccchhHHHHHHHHHHHHHhcccccc-ccCCCCce
Q 048135 354 LRLSYHHLPSHLKRCFSYSAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMEDLGHKYFRDLLSRSIFQK-SCNNSSKF 432 (1189)
Q Consensus 354 l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~~~~~~ 432 (1189)
..==+|.||+++|.-++-+|+++.= . ..++... +-++-|..++++|.+++++-. -++....|
T Consensus 262 ~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L-------------tg~~ng~amLe~L~~~gLFl~~Ldd~~~Wf 324 (894)
T COG2909 262 VEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL-------------TGEENGQAMLEELERRGLFLQRLDDEGQWF 324 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH-------------hcCCcHHHHHHHHHhCCCceeeecCCCcee
Confidence 1223689999999999999998531 1 2222221 122446778999999998864 45567789
Q ss_pred EeChhHHHHHHHhhc
Q 048135 433 LMHDLVNDLAQWVSG 447 (1189)
Q Consensus 433 ~mHdlv~d~~~~i~~ 447 (1189)
+.|.++.||.+.--.
T Consensus 325 ryH~LFaeFL~~r~~ 339 (894)
T COG2909 325 RYHHLFAEFLRQRLQ 339 (894)
T ss_pred ehhHHHHHHHHhhhc
Confidence 999999999876543
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.43 E-value=1.8e-07 Score=91.77 Aligned_cols=105 Identities=30% Similarity=0.328 Sum_probs=54.6
Q ss_pred CCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccc-cCCCCCcEEeccCccccccCc--hhhhccccCCc
Q 048135 522 KFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPEST-CSLINLQTLLLRRCFYLMKWP--SKVMNLINLRH 598 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~ 598 (1189)
.+.+|++|++++|.++.++ .+..+++|+.|++++|.|+.+++.+ ..+++|++|++++| .+..+- ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 5678999999999999985 5888999999999999999997666 46999999999998 555543 34678999999
Q ss_pred ccccCCcccccCCC----CCCCCCCCceeCceecc
Q 048135 599 LDITDVHLIKEMPL----GMEEWKCLQTLSNFIVS 629 (1189)
Q Consensus 599 L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 629 (1189)
|++.+|. +...+. -+..+++|+.|+...+.
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 9999998 444443 25678888888775554
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=1.4e-08 Score=111.71 Aligned_cols=171 Identities=20% Similarity=0.278 Sum_probs=138.7
Q ss_pred CCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCccccc
Q 048135 523 FKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDIT 602 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 602 (1189)
+..-...||+.|.+.++|..++.+..|..|.|.+|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|-++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEe
Confidence 3445678999999999999999999999999999999999999999999999999998 7899999998876 8999999
Q ss_pred CCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcce
Q 048135 603 DVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKE 682 (1189)
Q Consensus 603 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~ 682 (1189)
+|+ ++.+|.+|+-+..|..|+...+ ++ ...+..+..+.+|+.
T Consensus 152 NNk-l~~lp~~ig~~~tl~~ld~s~n----------------------ei---------------~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 152 NNK-LTSLPEEIGLLPTLAHLDVSKN----------------------EI---------------QSLPSQLGYLTSLRD 193 (722)
T ss_pred cCc-cccCCcccccchhHHHhhhhhh----------------------hh---------------hhchHHhhhHHHHHH
Confidence 887 9999999997777776643111 11 112333455677888
Q ss_pred EEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeecccc
Q 048135 683 LTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREMT 737 (1189)
Q Consensus 683 L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~~ 737 (1189)
|.+..|....+|..+.+ -.|..|+++.| ....+| .+.++..|++|.|.+++
T Consensus 194 l~vrRn~l~~lp~El~~---LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELCS---LPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHhhhhhhhCCHHHhC---CceeeeecccC-ceeecchhhhhhhhheeeeeccCC
Confidence 88888888888887752 35888999865 466778 68999999999998764
No 44
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=1.6e-06 Score=92.91 Aligned_cols=173 Identities=19% Similarity=0.174 Sum_probs=82.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHH--------------HHHccCCCC------CC
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAI--------------LESVTSSPS------NL 200 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--------------~~~l~~~~~------~~ 200 (1189)
.+.|+|+.|+|||+|++.+.+......+ .++|+...+..... ....+ ...+..... ..
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEESNES-SLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTBSHHH-HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccchhhh-HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 3459999999999999999885422213 33444333333221 11221 111111110 11
Q ss_pred CChhHHHHHHHHHHc--cCceEEEecCCCCCC------hhhHHhhccccC---CCCCCcEEEEEcCCchhhhc-------
Q 048135 201 KDLNQVQIQLEKAIA--GQKFLIVLDNVWSKN------YGLWKTLKSPFM---AGTPGSKIIVTTRSVDVALT------- 262 (1189)
Q Consensus 201 ~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~l~~~l~---~~~~gs~iivTtr~~~v~~~------- 262 (1189)
.........+.+.+. +++++||+||+..-. ......+...+. ...+.+ +|++.....+...
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~ 178 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSP 178 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTST
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCc
Confidence 122223333333343 456999999995432 111222222222 233344 4444444433322
Q ss_pred -cCCCceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 263 -LGPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 263 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
.+....+.+++++.+++++++...+-.. . .- +.-.+..++|+..+||+|..|..
T Consensus 179 ~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 179 LFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred cccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 1223459999999999999999865322 1 11 11234458999999999998764
No 45
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1.1e-06 Score=84.07 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=80.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccC----cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEG----FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIA 215 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 215 (1189)
+.+.|+|.+|+|||++++.+.++..... -..++|+.+....+...+...++.+++.......+.+++...+.+.+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 4566999999999999999987532110 134578988877799999999999998776655566777788888887
Q ss_pred cCce-EEEecCCCCC-ChhhHHhhccccCCCCCCcEEEEEcCC
Q 048135 216 GQKF-LIVLDNVWSK-NYGLWKTLKSPFMAGTPGSKIIVTTRS 256 (1189)
Q Consensus 216 ~~~~-LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 256 (1189)
..+. +||+||++.- ..+.++.+..... ..+.+||+..+.
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6655 9999999554 4445555544333 467778877664
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.33 E-value=4e-06 Score=89.68 Aligned_cols=147 Identities=23% Similarity=0.288 Sum_probs=90.5
Q ss_pred EEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEEe
Q 048135 144 LVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIVL 223 (1189)
Q Consensus 144 I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Llvl 223 (1189)
.||++|+||||||+.+...... .|..++...+-.+-++.++++.. +....+++.+|++
T Consensus 53 l~GPPG~GKTTlA~liA~~~~~------~f~~~sAv~~gvkdlr~i~e~a~----------------~~~~~gr~tiLfl 110 (436)
T COG2256 53 LWGPPGTGKTTLARLIAGTTNA------AFEALSAVTSGVKDLREIIEEAR----------------KNRLLGRRTILFL 110 (436)
T ss_pred EECCCCCCHHHHHHHHHHhhCC------ceEEeccccccHHHHHHHHHHHH----------------HHHhcCCceEEEE
Confidence 7999999999999999874222 23344444433333344443311 2334589999999
Q ss_pred cCCCCCChhhHHhhccccCCCCCCcEEEE--EcCCchhhh---ccCCCceEeCCCCChhhHHHHHHHhhccCCCccc--c
Q 048135 224 DNVWSKNYGLWKTLKSPFMAGTPGSKIIV--TTRSVDVAL---TLGPIDYYNLELLSDDDCWSIFEKHAFENRDASA--H 296 (1189)
Q Consensus 224 Ddv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~---~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~--~ 296 (1189)
|.|..=+-.+-+.+.. .-..|.-|+| ||.++...- ..+-..+|++++|+.+|-.+++.+.+......-. .
T Consensus 111 DEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~ 187 (436)
T COG2256 111 DEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQI 187 (436)
T ss_pred ehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCccc
Confidence 9997655455555543 3455777776 666654321 1233479999999999999999884422211111 0
Q ss_pred h-hHHHHHHHHHHHhCCChH
Q 048135 297 Q-NLELIHAKVVEKCKGLPQ 315 (1189)
Q Consensus 297 ~-~~~~~~~~i~~~c~g~Pl 315 (1189)
. --++...-+++.++|---
T Consensus 188 ~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 188 IVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred ccCCHHHHHHHHHhcCchHH
Confidence 1 113456678888888653
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=5.7e-07 Score=72.10 Aligned_cols=57 Identities=33% Similarity=0.498 Sum_probs=47.7
Q ss_pred CcceEEEeccCCCcccC-ccccCcccccEEeccccccccccc-cccCCCCCcEEeccCc
Q 048135 524 KKLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRC 580 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~ 580 (1189)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+|+ .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46888899998888886 567888999999999888888854 5788888888888887
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2e-07 Score=99.64 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=85.6
Q ss_pred cCcccccEEeccccccccccc--cccCCCCCcEEeccCccccccC---chhhhccccCCcccccCCcccccCCCCCCCCC
Q 048135 544 GRLMHLRYLDMSNTAISSLPE--STCSLINLQTLLLRRCFYLMKW---PSKVMNLINLRHLDITDVHLIKEMPLGMEEWK 618 (1189)
Q Consensus 544 ~~l~~L~~L~L~~~~i~~LP~--~i~~L~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~ 618 (1189)
.++.+||...|.++.+...+. ....+++++.|||++| -+... -.-...|++|+.|+++.|. +.. | +++..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~-~--~~s~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSN-F--ISSNT 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccC-C--ccccc
Confidence 456666667776666665552 4556777777777765 22222 1223567777777777765 211 1 11100
Q ss_pred CCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCCCCC
Q 048135 619 CLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPSWVG 698 (1189)
Q Consensus 619 ~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 698 (1189)
+ ..+++|+.|.++.|+-. ...+...+...++|+.|++.+|.+. +-.-..
T Consensus 193 ---~------------------------~~l~~lK~L~l~~CGls---~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~ 241 (505)
T KOG3207|consen 193 ---T------------------------LLLSHLKQLVLNSCGLS---WKDVQWILLTFPSLEVLYLEANEII-LIKATS 241 (505)
T ss_pred ---h------------------------hhhhhhheEEeccCCCC---HHHHHHHHHhCCcHHHhhhhccccc-ceecch
Confidence 0 01234455555443311 2233334455677777877776311 111111
Q ss_pred CCCCCceeEEEecCCCCCC--CCCCCCcccCcceEeeccc
Q 048135 699 DPSFSNIVMITLESCTNCR--SLPSLGLLCSLKALTIREM 736 (1189)
Q Consensus 699 ~~~~~~L~~L~l~~~~~~~--~lp~l~~l~~L~~L~L~~~ 736 (1189)
...+..|+.|+|++|.... .++..+.+|.|..|.++.+
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 1236678888888887543 3456788888888888764
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=1.8e-07 Score=94.48 Aligned_cols=151 Identities=21% Similarity=0.220 Sum_probs=90.4
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccc----ccc--------------------ccCCCCCcEE
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSL----PES--------------------TCSLINLQTL 575 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~L----P~~--------------------i~~L~~L~~L 575 (1189)
+.-|++|..+.+++|.-..+-.-...-+.|+.+...++.++.. |.. +..-+.|.+|
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred hHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 4567788888888887655533333345788888887655532 321 1112345555
Q ss_pred eccCccccccCchhhhccccCCcccccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccc
Q 048135 576 LLRRCFYLMKWPSKVMNLINLRHLDITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECL 655 (1189)
Q Consensus 576 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L 655 (1189)
||++| .++.+.+++.-++++|.|++++|. +..+
T Consensus 290 DLS~N-~I~~iDESvKL~Pkir~L~lS~N~-i~~v--------------------------------------------- 322 (490)
T KOG1259|consen 290 DLSGN-LITQIDESVKLAPKLRRLILSQNR-IRTV--------------------------------------------- 322 (490)
T ss_pred ccccc-chhhhhhhhhhccceeEEeccccc-eeee---------------------------------------------
Confidence 55554 344444444445555555555543 1111
Q ss_pred eeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeecc
Q 048135 656 VLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIRE 735 (1189)
Q Consensus 656 ~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~ 735 (1189)
..+..+++|..|++++|..+++..|-. .+.|++.|.|++|. ++++..++++-+|..|++++
T Consensus 323 ----------------~nLa~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 323 ----------------QNLAELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred ----------------hhhhhcccceEeecccchhHhhhhhHh--hhcCEeeeehhhhh-HhhhhhhHhhhhheeccccc
Confidence 112334566677777777777776665 47788888888764 55667777888888888876
Q ss_pred c
Q 048135 736 M 736 (1189)
Q Consensus 736 ~ 736 (1189)
+
T Consensus 384 N 384 (490)
T KOG1259|consen 384 N 384 (490)
T ss_pred c
Confidence 4
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.22 E-value=7.1e-07 Score=103.76 Aligned_cols=159 Identities=25% Similarity=0.341 Sum_probs=124.8
Q ss_pred hcCCC-cceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCc
Q 048135 520 LPKFK-KLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRH 598 (1189)
Q Consensus 520 ~~~l~-~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 598 (1189)
...+. +|+.|++++|.+..+|..++.+++|+.|++++|++.++|...+.+.+|+.|++++| .+..+|..+..+.+|++
T Consensus 135 ~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 135 IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEE 213 (394)
T ss_pred cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhh
Confidence 34453 89999999999999998999999999999999999999998889999999999998 89999998888889999
Q ss_pred ccccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCC
Q 048135 599 LDITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHT 678 (1189)
Q Consensus 599 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~ 678 (1189)
|.+++|. ....+..+.+++++..+...... + ......+..++
T Consensus 214 l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~----------------------~---------------~~~~~~~~~l~ 255 (394)
T COG4886 214 LDLSNNS-IIELLSSLSNLKNLSGLELSNNK----------------------L---------------EDLPESIGNLS 255 (394)
T ss_pred hhhcCCc-ceecchhhhhcccccccccCCce----------------------e---------------eeccchhcccc
Confidence 9999986 55666677777777766411000 0 00023345566
Q ss_pred CcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC
Q 048135 679 SLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP 720 (1189)
Q Consensus 679 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp 720 (1189)
+++.|+++++.+..++. ++ .+.+++.|+++++.....+|
T Consensus 256 ~l~~L~~s~n~i~~i~~-~~--~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 256 NLETLDLSNNQISSISS-LG--SLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccceecccccccccccc-cc--ccCccCEEeccCccccccch
Confidence 78888888888888776 33 47888999998887655555
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=2.6e-07 Score=93.38 Aligned_cols=101 Identities=23% Similarity=0.282 Sum_probs=74.8
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
....+.|..||||+|.|+.+.++..-++.+|.|++++|.|..+-. +..|++|+.|||++| .+.++-..=.+|-|.+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 345567889999999999998888888899999999998887754 788899999999987 455554333567788888
Q ss_pred cccCCcccccCCCCCCCCCCCceeC
Q 048135 600 DITDVHLIKEMPLGMEEWKCLQTLS 624 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~i~~L~~L~~L~ 624 (1189)
.+++|. +..+ .++++|-+|..|+
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLD 380 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheecc
Confidence 888876 4443 3455555555553
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=1.9e-06 Score=104.58 Aligned_cols=92 Identities=25% Similarity=0.362 Sum_probs=82.2
Q ss_pred cceEEEeccCCCc-ccCccccCcccccEEeccccccc-cccccccCCCCCcEEeccCccccccCchhhhccccCCccccc
Q 048135 525 KLRVLSLKSYHII-ELPNSIGRLMHLRYLDMSNTAIS-SLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDIT 602 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 602 (1189)
.++.|+|+++.+. .+|..|+++++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4888999999987 57899999999999999999997 789999999999999999996666899999999999999999
Q ss_pred CCcccccCCCCCCC
Q 048135 603 DVHLIKEMPLGMEE 616 (1189)
Q Consensus 603 ~~~~~~~~p~~i~~ 616 (1189)
+|.....+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99866788877654
No 53
>PF13173 AAA_14: AAA domain
Probab=98.13 E-value=5.5e-06 Score=78.34 Aligned_cols=119 Identities=22% Similarity=0.183 Sum_probs=75.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+++.|.|+.|+||||++++++.+.. ....+++++..+....... +.+ ..+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCCc
Confidence 3456999999999999999987533 1244566655443221100 000 22333343444788
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhcc------CCCceEeCCCCChhhH
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL------GPIDYYNLELLSDDDC 279 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~------~~~~~~~l~~L~~~~~ 279 (1189)
+++||++.. ...|......+.+..+..+|++|+........- +....+++.||+..|.
T Consensus 64 ~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 999999944 356777666666655678999999877665321 1224688999987763
No 54
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.13 E-value=3.6e-06 Score=88.38 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=60.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC--cCHHHHHHHHHHHccCCCCCCCChh------HHHHHHHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED--FDVLKITKAILESVTSSPSNLKDLN------QVQIQLEKA 213 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l~~~ 213 (1189)
+.|+|.+|+|||||++.+|++.....|+.++|+.++.. +++.++++.+...+-....+..... ......+..
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~ 98 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRL 98 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999765556999999997766 7999999999443332222211111 112222222
Q ss_pred -HccCceEEEecCCC
Q 048135 214 -IAGQKFLIVLDNVW 227 (1189)
Q Consensus 214 -l~~~~~LlvlDdv~ 227 (1189)
-.++++++++|++.
T Consensus 99 ~~~G~~vll~iDei~ 113 (249)
T cd01128 99 VEHGKDVVILLDSIT 113 (249)
T ss_pred HHCCCCEEEEEECHH
Confidence 25899999999993
No 55
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.11 E-value=2.4e-05 Score=90.34 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=88.5
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH-HccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA-IAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~L 220 (1189)
+.++|++|+||||+|+.+++.... -|+.++......+-.+.+++ ..... ..+++.+
T Consensus 39 ilL~GppGtGKTtLA~~ia~~~~~------~~~~l~a~~~~~~~ir~ii~-----------------~~~~~~~~g~~~v 95 (413)
T PRK13342 39 MILWGPPGTGKTTLARIIAGATDA------PFEALSAVTSGVKDLREVIE-----------------EARQRRSAGRRTI 95 (413)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC------CEEEEecccccHHHHHHHHH-----------------HHHHhhhcCCceE
Confidence 458999999999999999874321 12323222111111122221 11111 2457889
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEE--EcCCchhh---hccCCCceEeCCCCChhhHHHHHHHhhccCCCccc
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIV--TTRSVDVA---LTLGPIDYYNLELLSDDDCWSIFEKHAFENRDASA 295 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~ 295 (1189)
|++|++|.-...+.+.+...+.. |..++| ||.+.... ........+++.+++.++.++++.+.+.......
T Consensus 96 L~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~- 171 (413)
T PRK13342 96 LFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL- 171 (413)
T ss_pred EEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-
Confidence 99999987655666666655533 455554 34433211 1112236799999999999999988653211100
Q ss_pred chhHHHHHHHHHHHhCCChHHHHHH
Q 048135 296 HQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 296 ~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
..--.+....|++.|+|.+..+.-+
T Consensus 172 i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 172 VELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 0112455678999999998766543
No 56
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.11 E-value=0.00052 Score=81.54 Aligned_cols=182 Identities=13% Similarity=0.072 Sum_probs=99.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccc----cCcC--ceEEEEecCCcCHHHHHHHHHHHccCCCC-CCCChhHHHHHHHHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEV----EGFN--PKAWVCVSEDFDVLKITKAILESVTSSPS-NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~----~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l 214 (1189)
+-|+|.+|.|||++++.|.+.... .... .+++|....-.+...++..|.+++..... ......+....+...+
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 358999999999999999764321 1122 24566666666788888888888854332 2222233344444443
Q ss_pred -c--cCceEEEecCCCCCChhhHHhhccccCC-CCCCcEEEE--EcCCchhh--------hccCCCceEeCCCCChhhHH
Q 048135 215 -A--GQKFLIVLDNVWSKNYGLWKTLKSPFMA-GTPGSKIIV--TTRSVDVA--------LTLGPIDYYNLELLSDDDCW 280 (1189)
Q Consensus 215 -~--~~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--Ttr~~~v~--------~~~~~~~~~~l~~L~~~~~~ 280 (1189)
. +...+||||+|+.-....-+.+...+.+ ...+++|+| +|.+.+.. ..++ ...+..++.+.++-.
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~ 942 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIE 942 (1164)
T ss_pred hcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHH
Confidence 2 2235899999953211011112211111 124566554 34322221 1222 123566899999999
Q ss_pred HHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 048135 281 SIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLL 324 (1189)
Q Consensus 281 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L 324 (1189)
+++..++-.......+..++-+|+.++..-|-.=.||.++-...
T Consensus 943 dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 943 KIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 99999875322222233344455544444444556666555444
No 57
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.09 E-value=4.3e-06 Score=90.23 Aligned_cols=235 Identities=19% Similarity=0.191 Sum_probs=150.3
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcCccccC-cC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHc
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYNDKEVEG-FN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIA 215 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 215 (1189)
..|.++++|.|||||||++-++.. +.. |. .+.++....--|...+.-.+...++....+. +.....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 457789999999999999988876 333 65 4445544444455555555555565443321 223345666778
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhccCCCceEeCCCCChh-hHHHHHHHhhccCCCc-
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGPIDYYNLELLSDD-DCWSIFEKHAFENRDA- 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~~~- 293 (1189)
++|.++|+||-..- .+.-..+...+..+.+.-+|+.|+|..-. ......+.+..|+.. ++.++|...|......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998221 12223344444455566678999996432 234567788888774 7999988876432211
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCh-------hHHHHHHhhhccCcCCCCChHHHHHHhHhcCchhHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRD-------DEWQGILKSRIWDLSEESDILPVLRLSYHHLPSHLK 366 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~-------~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 366 (1189)
.-...-.....+|.++..|.|++|...++..++-... +.|...-.-............+.+..||.-|..-.+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 0111224567899999999999999999988765331 222222111000000024566789999999999999
Q ss_pred HHHhHhccCCCCceec
Q 048135 367 RCFSYSAIFPKGYEFE 382 (1189)
Q Consensus 367 ~~fl~~a~fp~~~~~~ 382 (1189)
--|..++.|..++.-.
T Consensus 243 ~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 243 ALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHhcchhhhhhhhccc
Confidence 9999999998776554
No 58
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.09 E-value=5.1e-06 Score=90.45 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=59.2
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc--CHHHHHHHHHHHccCCCCCCCChhHHH-----HHHHHH--
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF--DVLKITKAILESVTSSPSNLKDLNQVQ-----IQLEKA-- 213 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~-----~~l~~~-- 213 (1189)
.|+|++|+||||||++||++.....|+.++||.+++.+ ++.++++++...+-....+.....+.. ....++
T Consensus 173 lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~ 252 (416)
T PRK09376 173 LIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLV 252 (416)
T ss_pred EEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999997665569999999998887 788888888743332222222111111 111222
Q ss_pred HccCceEEEecCC
Q 048135 214 IAGQKFLIVLDNV 226 (1189)
Q Consensus 214 l~~~~~LlvlDdv 226 (1189)
-.++.++|++|++
T Consensus 253 e~G~dVlL~iDsI 265 (416)
T PRK09376 253 EHGKDVVILLDSI 265 (416)
T ss_pred HcCCCEEEEEECh
Confidence 3679999999999
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.07 E-value=1.4e-05 Score=84.67 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=86.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-|+|..|+|||++|+.+++.... .....++++++.-. ... . .+.+.+++ .-
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~-~~~~~~~i~~~~~~------~~~--------------~----~~~~~~~~-~~ 92 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAELA------QAD--------------P----EVLEGLEQ-AD 92 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEeHHHHH------HhH--------------H----HHHhhccc-CC
Confidence 34569999999999999999874321 12334555443221 100 0 01111222 24
Q ss_pred EEEecCCCCCChh-hH-HhhccccCC-CCCCcEEEEEcCCchh---------hhccCCCceEeCCCCChhhHHHHHHHhh
Q 048135 220 LIVLDNVWSKNYG-LW-KTLKSPFMA-GTPGSKIIVTTRSVDV---------ALTLGPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 220 LlvlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
+||+||++.-... .| +.+...+.. ...+.+||+||+.... ...+.....+++.++++++...++...+
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 8999999653221 22 333333221 1234578998885321 1122223578999999999999988765
Q ss_pred ccCCCcccchhHHHHHHHHHHHhCCChHHHHHHH
Q 048135 288 FENRDASAHQNLELIHAKVVEKCKGLPQAAANLG 321 (1189)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g 321 (1189)
-..+.. .. .+..+.+++.++|.|..+.-+-
T Consensus 173 ~~~~~~-~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 173 ARRGLQ-LP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHcCCC-CC---HHHHHHHHHhccCCHHHHHHHH
Confidence 322211 11 3455778888999998776554
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.5e-07 Score=95.20 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=16.8
Q ss_pred cceEEEeccCCCcc--cCccccCcccccEEecccccc
Q 048135 525 KLRVLSLKSYHIIE--LPNSIGRLMHLRYLDMSNTAI 559 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~L~~~~i 559 (1189)
.|++|||+...|+. +-.-+..+.+|+-|+|.++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L 222 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL 222 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc
Confidence 35566666555442 222234445555555555443
No 61
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=9.1e-07 Score=94.80 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=18.7
Q ss_pred CCCCccceEeeccCCCCcccCC---CCCCCCcCeEEEeccC
Q 048135 1013 INLECLHQIYIWDCSSFTSFPK---GGLPNTLSRISIGKCE 1050 (1189)
Q Consensus 1013 ~~l~~L~~L~l~~~~~l~~~p~---~~~~~~L~~L~l~~c~ 1050 (1189)
.++|+|+.|+|+.|. +..+.. ....++|+.|.++.|.
T Consensus 169 eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCG 208 (505)
T ss_pred Hhcccchhccccccc-ccCCccccchhhhhhhheEEeccCC
Confidence 345666666666653 221111 1234466666666664
No 62
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=3.7e-06 Score=67.40 Aligned_cols=58 Identities=38% Similarity=0.497 Sum_probs=51.6
Q ss_pred ccccEEeccccccccccc-cccCCCCCcEEeccCccccccCch-hhhccccCCcccccCCc
Q 048135 547 MHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKWPS-KVMNLINLRHLDITDVH 605 (1189)
Q Consensus 547 ~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 605 (1189)
++|++|++++|.++.+|+ .|.++++|++|++++| .+..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 6789999999999998 6777775 67999999999999986
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=6.1e-06 Score=60.12 Aligned_cols=39 Identities=33% Similarity=0.548 Sum_probs=20.4
Q ss_pred cceEEEeccCCCcccCccccCcccccEEecccccccccc
Q 048135 525 KLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLP 563 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP 563 (1189)
+|++|++++|.++.+|..+++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555555555555555555555555443
No 64
>PLN03150 hypothetical protein; Provisional
Probab=97.96 E-value=9.6e-06 Score=98.58 Aligned_cols=96 Identities=24% Similarity=0.374 Sum_probs=82.3
Q ss_pred hhhhhcCCCcceEEEeccCCCc-ccCccccCcccccEEeccccccc-cccccccCCCCCcEEeccCccccccCchhhhcc
Q 048135 516 LSDLLPKFKKLRVLSLKSYHII-ELPNSIGRLMHLRYLDMSNTAIS-SLPESTCSLINLQTLLLRRCFYLMKWPSKVMNL 593 (1189)
Q Consensus 516 ~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 593 (1189)
++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|+.+++|++|++|+|++|.....+|..++.+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 3456788999999999999987 78999999999999999999998 689999999999999999997777999988764
Q ss_pred -ccCCcccccCCcccccCC
Q 048135 594 -INLRHLDITDVHLIKEMP 611 (1189)
Q Consensus 594 -~~L~~L~l~~~~~~~~~p 611 (1189)
.++..+++.+|..+...|
T Consensus 514 ~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 514 LLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cccCceEEecCCccccCCC
Confidence 577888888886444433
No 65
>PRK09087 hypothetical protein; Validated
Probab=97.94 E-value=9.5e-05 Score=77.15 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=83.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|..|+|||+|++.++++.. ..+++.. .+..++...+. + -+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~------~~~i~~~------~~~~~~~~~~~---------------------~--~~ 90 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD------ALLIHPN------EIGSDAANAAA---------------------E--GP 90 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC------CEEecHH------HcchHHHHhhh---------------------c--Ce
Confidence 356999999999999998886422 1233221 12222221111 1 27
Q ss_pred EEecCCCCC--ChhhHHhhccccCCCCCCcEEEEEcCC---------chhhhccCCCceEeCCCCChhhHHHHHHHhhcc
Q 048135 221 IVLDNVWSK--NYGLWKTLKSPFMAGTPGSKIIVTTRS---------VDVALTLGPIDYYNLELLSDDDCWSIFEKHAFE 289 (1189)
Q Consensus 221 lvlDdv~~~--~~~~~~~l~~~l~~~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 289 (1189)
+++||+... +.+.+-.+...+.. .|..||+|++. +++...+....+++++++++++-.+++.+.+-.
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 888999542 22223233222222 36679998873 334444455578999999999999999988743
Q ss_pred CCCcccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 290 NRDASAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
.+ ...+ +++..-|++++.|..-++..
T Consensus 169 ~~-~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 169 RQ-LYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred cC-CCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 22 1111 45667788888887766664
No 66
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.94 E-value=0.0016 Score=78.63 Aligned_cols=179 Identities=20% Similarity=0.179 Sum_probs=103.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-c---CceEEEEecC---CcCHHHHHHHH---------------HHHccCCC-
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-F---NPKAWVCVSE---DFDVLKITKAI---------------LESVTSSP- 197 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-f---~~~~wv~~~~---~~~~~~~~~~i---------------~~~l~~~~- 197 (1189)
.+.|+|.+|+||||+|+.+++...... + ...-|+.+.. ..+...+...+ +...+...
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~ 256 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEP 256 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCch
Confidence 466999999999999999987543222 2 1234555432 11222221111 11111100
Q ss_pred ---------------CCCCCh-hHHHHHHHHHHccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEE--EcCCchh
Q 048135 198 ---------------SNLKDL-NQVQIQLEKAIAGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIV--TTRSVDV 259 (1189)
Q Consensus 198 ---------------~~~~~~-~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v 259 (1189)
++...+ ...+..+.+.++++++.++-|+.|.++...|+.+...+..+.+...|+| ||++...
T Consensus 257 ~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~ 336 (615)
T TIGR02903 257 KTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEE 336 (615)
T ss_pred hcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccc
Confidence 011111 2357788899999999999888888777889988877776666655665 6665432
Q ss_pred hh-cc-CCCceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhh
Q 048135 260 AL-TL-GPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGL 323 (1189)
Q Consensus 260 ~~-~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~ 323 (1189)
.. .. .....+.+.+++.+|.++++.+.+-..+.. .. .++...|.+++..-+-|+..++..
T Consensus 337 l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 337 INPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred cCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 11 11 112467889999999999999876422111 11 234445555554445555544433
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=2.3e-05 Score=91.47 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=95.3
Q ss_pred eEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH-----Hcc
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA-----IAG 216 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~ 216 (1189)
-++|+.|+||||+|+.+++.....+ +...+|.|.+... +.......+..+... .....+++.. +++. ..+
T Consensus 40 Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~~--~~~~vd~iR~-l~~~~~~~p~~~ 115 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDAA--SNNSVEDVRD-LREKVLLAPLRG 115 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEeccc--ccCCHHHHHH-HHHHHhhccccC
Confidence 4899999999999998877543222 3333444332110 000000000000100 1112222222 2222 234
Q ss_pred CceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCcc
Q 048135 217 QKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDAS 294 (1189)
Q Consensus 217 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~ 294 (1189)
++-++|+|+++......++.+...+......+.+|++|.. ..+...+ .....+++.+++.++..+.+.+.+...+...
T Consensus 116 ~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i 195 (504)
T PRK14963 116 GRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA 195 (504)
T ss_pred CCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5668999999776667788887777665555566655543 3333222 2236899999999999999988775433221
Q ss_pred cchhHHHHHHHHHHHhCCChHHH
Q 048135 295 AHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 295 ~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
-.+....|++.++|.+--+
T Consensus 196 ----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 196 ----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ----CHHHHHHHHHHcCCCHHHH
Confidence 1345678999999988544
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.3e-05 Score=58.43 Aligned_cols=40 Identities=35% Similarity=0.421 Sum_probs=31.7
Q ss_pred ccccEEeccccccccccccccCCCCCcEEeccCccccccCc
Q 048135 547 MHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWP 587 (1189)
Q Consensus 547 ~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp 587 (1189)
++|++|++++|.|+.+|+.+++|++|++|++++| .++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4789999999999999888899999999999988 566554
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=97.84 E-value=0.0016 Score=76.95 Aligned_cols=221 Identities=14% Similarity=0.157 Sum_probs=119.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-|+|++|+||||+|++++++.. |+ .+-++.+...... ....++....... .....++-
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el~---~~-~ielnasd~r~~~-~i~~~i~~~~~~~--------------sl~~~~~k 100 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDYG---WE-VIELNASDQRTAD-VIERVAGEAATSG--------------SLFGARRK 100 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC---CC-EEEEcccccccHH-HHHHHHHHhhccC--------------cccCCCCe
Confidence 4456999999999999999998532 33 2223344332222 2223322221100 00113677
Q ss_pred EEEecCCCCCCh----hhHHhhccccCCCCCCcEEEEEcCCch-hhh-c-cCCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 220 LIVLDNVWSKNY----GLWKTLKSPFMAGTPGSKIIVTTRSVD-VAL-T-LGPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 220 LlvlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. +.. . ......+++.+++.++....+.+.+...+.
T Consensus 101 vIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi 178 (482)
T PRK04195 101 LILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGI 178 (482)
T ss_pred EEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 999999965321 335555554442 2345666665432 111 1 122357899999999998888877654332
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCC-CC--hhHHHHHHhhhccCcCCCCChHHHHHHhHh-cCchhHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCK-QR--DDEWQGILKSRIWDLSEESDILPVLRLSYH-HLPSHLKRC 368 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~-~~--~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~~ 368 (1189)
..+ .+....|++.++|-.-.+...-..+... .. .+....+.. .....+++.++..-+. .-+......
T Consensus 179 ~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-----~d~~~~if~~l~~i~~~k~~~~a~~~ 249 (482)
T PRK04195 179 ECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-----RDREESIFDALDAVFKARNADQALEA 249 (482)
T ss_pred CCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-----CCCCCCHHHHHHHHHCCCCHHHHHHH
Confidence 221 3456889999999776655433333322 21 222222221 1113567777775554 333333333
Q ss_pred HhHhccCCCCceechHHHHHHHHHcCCccc
Q 048135 369 FSYSAIFPKGYEFEEMELILLWMADGLIQQ 398 (1189)
Q Consensus 369 fl~~a~fp~~~~~~~~~li~~wia~g~i~~ 398 (1189)
+..+ .++. ..+..|+.+.+...
T Consensus 250 ~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 250 SYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred HHcc-------cCCH-HHHHHHHHhccccc
Confidence 3221 2233 45778999999865
No 70
>PRK08727 hypothetical protein; Validated
Probab=97.81 E-value=0.00014 Score=76.78 Aligned_cols=146 Identities=19% Similarity=0.114 Sum_probs=84.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+.|+|..|+|||+||+++++....+ ...+.|+++.+ ....+. ..+ +.+ .+.-+|
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~-~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~dlL 97 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA-GRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGRSLV 97 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcCCEE
Confidence 5699999999999999998753222 23455665322 111111 111 122 123589
Q ss_pred EecCCCCCC-hhhHHh-hccccCC-CCCCcEEEEEcCCc---------hhhhccCCCceEeCCCCChhhHHHHHHHhhcc
Q 048135 222 VLDNVWSKN-YGLWKT-LKSPFMA-GTPGSKIIVTTRSV---------DVALTLGPIDYYNLELLSDDDCWSIFEKHAFE 289 (1189)
Q Consensus 222 vlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 289 (1189)
|+||+.... ...|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+.|..
T Consensus 98 iIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 98 ALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 999995321 122332 2222111 12466799999852 22222233458999999999999999987754
Q ss_pred CCCcccchhHHHHHHHHHHHhCCChHHH
Q 048135 290 NRDASAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
.+-.. -++...-|++.++|-.-++
T Consensus 178 ~~l~l----~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 178 RGLAL----DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 32211 1345677888888766554
No 71
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00036 Score=77.63 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=92.9
Q ss_pred eEEccCCCcHHHHHHHHhcCcc----ccC-cCceEEEEe-cCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 143 TLVGMGGIGKTTLARLVYNDKE----VEG-FNPKAWVCV-SEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~----~~~-f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
-++|+.|+||||+|+.++...- ... +|...|... +.....++ .+++.+.+... -..+
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~----------------p~~~ 92 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKK----------------PYEG 92 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcC----------------cccC
Confidence 4899999999999998876321 112 454444331 22222222 12222222110 1124
Q ss_pred CceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhh-hc-cCCCceEeCCCCChhhHHHHHHHhhccCCCcc
Q 048135 217 QKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVA-LT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDAS 294 (1189)
Q Consensus 217 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~ 294 (1189)
++=++|+|+++.-+...|+.+...+....+++.+|++|.+.+.. .. ......+++.++++++..+.+.+.. . ...
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~--~~~ 169 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-N--DIK 169 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-c--CCC
Confidence 45577778776666678999998888777889999888765422 11 1223689999999999887776543 1 111
Q ss_pred cchhHHHHHHHHHHHhCCChHHHH
Q 048135 295 AHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 295 ~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
.+.+..++..++|.|..+.
T Consensus 170 -----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 170 -----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred -----HHHHHHHHHHcCCCHHHHH
Confidence 2235678999999987554
No 72
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.75 E-value=8.1e-05 Score=81.80 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=60.0
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC--cCHHHHHHHHHHHccCCCCCCCChh------HHHHHHHHH-
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED--FDVLKITKAILESVTSSPSNLKDLN------QVQIQLEKA- 213 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l~~~- 213 (1189)
.|+|.+|.|||||++.+++......|+..+||.+.+. .++.++++.+...+-....+..... .+.+..+..
T Consensus 172 ~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~ 251 (415)
T TIGR00767 172 LIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV 251 (415)
T ss_pred EEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999998755545999999999865 7899999999655543333221111 111111122
Q ss_pred HccCceEEEecCCC
Q 048135 214 IAGQKFLIVLDNVW 227 (1189)
Q Consensus 214 l~~~~~LlvlDdv~ 227 (1189)
-++++++|++|++.
T Consensus 252 ~~GkdVVLlIDEit 265 (415)
T TIGR00767 252 EHKKDVVILLDSIT 265 (415)
T ss_pred HcCCCeEEEEEChh
Confidence 36899999999993
No 73
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.74 E-value=0.0002 Score=75.58 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=86.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|+.|+|||+||+++++..... -..+.++.+..... ...+. .+.+.. --+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~--------------------~~~~~----~~~~~~-~dl 100 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW--------------------FVPEV----LEGMEQ-LSL 100 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh--------------------hhHHH----HHHhhh-CCE
Confidence 34599999999999999988743221 22345555532100 00111 111211 247
Q ss_pred EEecCCCCCC-hhhHHhhc-cccCC-CCCC-cEEEEEcCCc---------hhhhccCCCceEeCCCCChhhHHHHHHHhh
Q 048135 221 IVLDNVWSKN-YGLWKTLK-SPFMA-GTPG-SKIIVTTRSV---------DVALTLGPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 221 lvlDdv~~~~-~~~~~~l~-~~l~~-~~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
+++||+..-. ...|+... ..+.. ...| .++|+||+.. ++...+....+++++++++++-.+++.++|
T Consensus 101 liiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 101 VCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred EEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 8999995421 13444321 22211 0123 3799999854 233334445789999999999999988866
Q ss_pred ccCCCcccchhHHHHHHHHHHHhCCChHHHHHHH
Q 048135 288 FENRDASAHQNLELIHAKVVEKCKGLPQAAANLG 321 (1189)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g 321 (1189)
...+ ... -+++..-|++++.|..-++..+-
T Consensus 181 ~~~~-~~l---~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 181 RLRG-FEL---PEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHcC-CCC---CHHHHHHHHHhhcCCHHHHHHHH
Confidence 4322 111 14567778888887766555433
No 74
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00046 Score=78.23 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=65.0
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-....++.+...+.......++|++|.+. .+.... +....+++++++.++..+.+.+.+...+..
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 345699999997665556777777776655566777766543 232221 223689999999999998887766433211
Q ss_pred ccchhHHHHHHHHHHHhCCChHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
. -.+.+..|++.++|.|-.+
T Consensus 198 i----~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 198 T----DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 1 1345677899999988543
No 75
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00042 Score=83.74 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=68.1
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|||++..-..+.++.+...+.......++|++|.+ ..+... ......|++++++.++..+.+.+.+-..+.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 467779999999777777888887777665556666665554 334322 122368999999999999888876532211
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
. --.+....|++.++|.|--+.
T Consensus 197 ~----~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 197 P----FEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred C----CCHHHHHHHHHHcCCCHHHHH
Confidence 1 113456789999999885433
No 76
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.70 E-value=2.6e-06 Score=88.95 Aligned_cols=197 Identities=17% Similarity=0.189 Sum_probs=107.7
Q ss_pred hhhcCCCcceEEEeccCCCc-----ccCccccCcccccEEecccc----ccccccccc-------cCCCCCcEEeccCcc
Q 048135 518 DLLPKFKKLRVLSLKSYHII-----ELPNSIGRLMHLRYLDMSNT----AISSLPEST-------CSLINLQTLLLRRCF 581 (1189)
Q Consensus 518 ~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~----~i~~LP~~i-------~~L~~L~~L~L~~~~ 581 (1189)
.....+..+..++|++|.+. .+-+.+.+.++||.-++++- ...++|+.+ -..++|++||||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34556778889999998874 34456667778888888863 223555543 344689999999874
Q ss_pred ccccCc----hhhhccccCCcccccCCcccccCCCC-CCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccce
Q 048135 582 YLMKWP----SKVMNLINLRHLDITDVHLIKEMPLG-MEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLV 656 (1189)
Q Consensus 582 ~l~~lp----~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 656 (1189)
.-..-+ .-|...+.|+||.|.+|. +.....+ ++ ..|..|. ..........|+.+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~--~al~~l~-----------------~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLG--RALFELA-----------------VNKKAASKPKLRVFI 163 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHH--HHHHHHH-----------------HHhccCCCcceEEEE
Confidence 322222 235668889999998886 2211110 11 1122221 001122344555554
Q ss_pred eeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCCCC-----CCCCCCceeEEEecCCCCCCC----CC-CCCccc
Q 048135 657 LECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPSWV-----GDPSFSNIVMITLESCTNCRS----LP-SLGLLC 726 (1189)
Q Consensus 657 l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~-----~~~~~~~L~~L~l~~~~~~~~----lp-~l~~l~ 726 (1189)
...+.-.+......-..+..++.|+.+.+..|.+. |.-+ ....+++|+.|+|.+|..... +. .+..++
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~--~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR--PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEeccccc--CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 44333223333344445556667777777665542 1111 011456777777777654211 11 355566
Q ss_pred CcceEeeccc
Q 048135 727 SLKALTIREM 736 (1189)
Q Consensus 727 ~L~~L~L~~~ 736 (1189)
+|+.|++.+|
T Consensus 242 ~L~El~l~dc 251 (382)
T KOG1909|consen 242 HLRELNLGDC 251 (382)
T ss_pred hheeeccccc
Confidence 7777777776
No 77
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.69 E-value=0.0008 Score=73.14 Aligned_cols=132 Identities=12% Similarity=0.048 Sum_probs=71.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
.+.++|.+|.||||+|+.+.......+ ....-|+.++. .+ +...+.+.. .......+.+ ...-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~---a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKR---AMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHH---ccCc
Confidence 356899999999999977765322222 21223554542 12 222222111 1112222222 1335
Q ss_pred EEEecCCCCC---------ChhhHHhhccccCCCCCCcEEEEEcCCchhhhccC--------CCceEeCCCCChhhHHHH
Q 048135 220 LIVLDNVWSK---------NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLG--------PIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 220 LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 282 (1189)
+|+||++..- ..+.++.+...+.....+-+||+++.......... ....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999521 12334555555554445666777665432221111 135689999999999999
Q ss_pred HHHhhc
Q 048135 283 FEKHAF 288 (1189)
Q Consensus 283 f~~~a~ 288 (1189)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888763
No 78
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.69 E-value=0.0016 Score=68.91 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=103.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC-----cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG-----FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
..|||.+|+|||+++++...+..... --.++.|.+....+...+...|+.+++.+.............+.+.++.
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~ 143 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRR 143 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHH
Confidence 35999999999999999875432211 1146667777888999999999999998876666666666666666654
Q ss_pred C-ceEEEecCCCCC---ChhhHHhhccccC---CCCCCcEEEEEcCCchhhhccC-----CCceEeCCCCCh-hhHHHHH
Q 048135 217 Q-KFLIVLDNVWSK---NYGLWKTLKSPFM---AGTPGSKIIVTTRSVDVALTLG-----PIDYYNLELLSD-DDCWSIF 283 (1189)
Q Consensus 217 ~-~~LlvlDdv~~~---~~~~~~~l~~~l~---~~~~gs~iivTtr~~~v~~~~~-----~~~~~~l~~L~~-~~~~~lf 283 (1189)
- -=+||+|.+.+- ...+-.++...+. ..-.=+-|.|-|++---+-... -...+.++.-.. +|...|+
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL 223 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLL 223 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHH
Confidence 3 348999999551 1111122222222 2122344555555322211111 113555655554 4445554
Q ss_pred HHhh--ccCCCcccchhHHHHHHHHHHHhCCChHHHH
Q 048135 284 EKHA--FENRDASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 284 ~~~a--~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
.... .+-..++. -...+++..|...++|+.=-+.
T Consensus 224 ~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 224 ASFERALPLRKPSN-LASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHH
Confidence 3322 12222222 1236789999999999864443
No 79
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.68 E-value=0.0002 Score=74.53 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=89.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+-|+|..|+|||.|.+++++......-+ .++++ +..++...+...+.. ... ..+++.+++ -=+
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~-----~~~----~~~~~~~~~-~Dl 100 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFADALRD-----GEI----EEFKDRLRS-ADL 100 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHHHHHT-----TSH----HHHHHHHCT-SSE
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHHHHHc-----ccc----hhhhhhhhc-CCE
Confidence 4599999999999999999854322222 34454 445666666666542 122 234455553 448
Q ss_pred EEecCCCCCCh-hhHHh----hccccCCCCCCcEEEEEcCCchh---------hhccCCCceEeCCCCChhhHHHHHHHh
Q 048135 221 IVLDNVWSKNY-GLWKT----LKSPFMAGTPGSKIIVTTRSVDV---------ALTLGPIDYYNLELLSDDDCWSIFEKH 286 (1189)
Q Consensus 221 lvlDdv~~~~~-~~~~~----l~~~l~~~~~gs~iivTtr~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 286 (1189)
|++||++.-.. ..|.. +...+. ..|-+||+|++...- ...+...-+++++++++++..+++.+.
T Consensus 101 L~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 101 LIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp EEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH
T ss_pred EEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH
Confidence 89999955221 22332 222222 246689999965321 122233458999999999999999998
Q ss_pred hccCCCcccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 287 AFENRDASAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
|-..+-.- -++++.-|++.+.+..-.+..+
T Consensus 179 a~~~~~~l----~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 179 AKERGIEL----PEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHTT--S-----HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHhCCCC----cHHHHHHHHHhhcCCHHHHHHH
Confidence 85433221 2456667777777666555433
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00063 Score=79.17 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=68.1
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEE-EcCCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIV-TTRSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|+|+++.-....|+.+...+....+.+.+|+ ||+.+.+.... .....+++++++.++..+.+.+.+-..+.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677899999987666788888877766555666654 55544544332 22357999999999999999888754332
Q ss_pred cccchhHHHHHHHHHHHhCCChHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
... .+....|++.++|.+--+
T Consensus 206 ~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 206 KTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCC----HHHHHHHHHHcCCCHHHH
Confidence 211 234567899999977443
No 81
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=0.00014 Score=71.25 Aligned_cols=106 Identities=20% Similarity=0.144 Sum_probs=56.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+.|+|.+|+||||+|+++++..... -..++++...+..........+... ............++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 86 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKAKPG 86 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccCCCe
Confidence 345699999999999999999854311 2345566554433222211111100 001111222345678
Q ss_pred EEEecCCCCCCh---hhHHhhccccCCC---CCCcEEEEEcCCch
Q 048135 220 LIVLDNVWSKNY---GLWKTLKSPFMAG---TPGSKIIVTTRSVD 258 (1189)
Q Consensus 220 LlvlDdv~~~~~---~~~~~l~~~l~~~---~~gs~iivTtr~~~ 258 (1189)
++|+||++.-.. ..+..+....... ..+.+||+||....
T Consensus 87 ~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 87 VLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred EEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 999999974311 2222222222221 35778888888654
No 82
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.00036 Score=80.80 Aligned_cols=166 Identities=12% Similarity=0.077 Sum_probs=97.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
.+.|+|..|+|||+|++++.+...... -..++++ +..++...+...+.... .....+++.++ +.-
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~d 208 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEIC-QND 208 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cCC
Confidence 345999999999999999987432211 1123333 33456666666654210 12233444444 345
Q ss_pred EEEecCCCCCCh-hhH-HhhccccCC-CCCCcEEEEEcCCch---------hhhccCCCceEeCCCCChhhHHHHHHHhh
Q 048135 220 LIVLDNVWSKNY-GLW-KTLKSPFMA-GTPGSKIIVTTRSVD---------VALTLGPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 220 LlvlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
+||+||+..-.. ..| +.+...+.. ...|..||+|+.... +...+...-++++++++.++-.+++.+++
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 888999954321 122 233332221 123557888876431 22223334578899999999999999987
Q ss_pred ccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHh
Q 048135 288 FENRDASAHQNLELIHAKVVEKCKGLPQAAANLGG 322 (1189)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~ 322 (1189)
-..+-. ..--+++..-|++.++|.|-.+.-+-.
T Consensus 289 ~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 289 KNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 432210 012256778899999999977765543
No 83
>PLN03025 replication factor C subunit; Provisional
Probab=97.64 E-value=0.00038 Score=77.61 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=87.1
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCc-eEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNP-KAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
-++|++|+||||+|+.+.+......|.. ++-+..+...+.. ..+++++........ .-.++.-++
T Consensus 38 ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~~-------------~~~~~~kvi 103 (319)
T PLN03025 38 ILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVRNKIKMFAQKKVT-------------LPPGRHKIV 103 (319)
T ss_pred EEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHHHHHHHHHhcccc-------------CCCCCeEEE
Confidence 4899999999999999886432111321 1112222222221 112222111100000 001345689
Q ss_pred EecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCcccchhH
Q 048135 222 VLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNL 299 (1189)
Q Consensus 222 vlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~ 299 (1189)
|+|+++.-.....+.+...+......+++|+++... .+.... .....++++++++++..+.+.+.+-..+....
T Consensus 104 iiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~---- 179 (319)
T PLN03025 104 ILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV---- 179 (319)
T ss_pred EEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC----
Confidence 999997655555566655554444567777776543 221111 12257899999999999888887644332221
Q ss_pred HHHHHHHHHHhCCChHHH
Q 048135 300 ELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 300 ~~~~~~i~~~c~g~Plai 317 (1189)
.+....|++.++|-.-.+
T Consensus 180 ~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 180 PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 345678899999876433
No 84
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.64 E-value=0.0015 Score=81.86 Aligned_cols=212 Identities=17% Similarity=0.114 Sum_probs=120.7
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCC------CCcEEEEEcCCc--hhhhccCCCceEeCCCCChhhHHHHHHHh
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGT------PGSKIIVTTRSV--DVALTLGPIDYYNLELLSDDDCWSIFEKH 286 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~------~gs~iivTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 286 (1189)
+.++.++|+||+.=.|....+-+......-. +..-.+.|.+.. .+.........+.+.||+..+...+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 3569999999994333333333322221111 011122233322 12222223368999999999999998876
Q ss_pred hccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCC------CChhHHHHHHhhhccCcCCCCChHHHHHHhHhc
Q 048135 287 AFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCK------QRDDEWQGILKSRIWDLSEESDILPVLRLSYHH 360 (1189)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~------~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~ 360 (1189)
... ... ...+....|+++.+|+|+-+.-+-..+... .+...|+.=..+. .....-+.+.+.+..-.+.
T Consensus 232 l~~-~~~----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~~~~~~vv~~l~~rl~k 305 (849)
T COG3899 232 LGC-TKL----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GILATTDAVVEFLAARLQK 305 (849)
T ss_pred hCC-ccc----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCchhhHHHHHHHHHHHhc
Confidence 532 111 224567899999999999999888877653 2233444322221 1111112255568888999
Q ss_pred CchhHHHHHhHhccCCCCceechHHHHHHHHHcCCcccCccchhHHHHHHHHHHHHHhcccccccc-----CCCC---ce
Q 048135 361 LPSHLKRCFSYSAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMEDLGHKYFRDLLSRSIFQKSC-----NNSS---KF 432 (1189)
Q Consensus 361 L~~~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-----~~~~---~~ 432 (1189)
||...|+..-..||+-.. |+.+.+-..|-. ...+.+....+.|....++-.++ .... +-
T Consensus 306 L~~~t~~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~ 372 (849)
T COG3899 306 LPGTTREVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYK 372 (849)
T ss_pred CCHHHHHHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHH
Confidence 999999999999999654 555555554421 23344555555555544443211 1111 12
Q ss_pred EeChhHHHHHHHh
Q 048135 433 LMHDLVNDLAQWV 445 (1189)
Q Consensus 433 ~mHdlv~d~~~~i 445 (1189)
..||.+++.+...
T Consensus 373 F~H~~vqqaaY~~ 385 (849)
T COG3899 373 FLHDRVQQAAYNL 385 (849)
T ss_pred hhHHHHHHHHhcc
Confidence 4688888777543
No 85
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0014 Score=77.68 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=69.1
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
++.-++|||+++.-....|+.+...+.......++|+||++.+ +...+ +-...|+++.++.++..+.+.+.+-..+..
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4455889999977666778888877766556778887777643 32221 223679999999999999888876433221
Q ss_pred ccchhHHHHHHHHHHHhCCCh-HHHHHHHh
Q 048135 294 SAHQNLELIHAKVVEKCKGLP-QAAANLGG 322 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~P-lai~~~g~ 322 (1189)
. -.+....|++.++|.. -|+..+-.
T Consensus 198 i----d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 198 F----EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1345678999998865 45554333
No 86
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.63 E-value=0.00062 Score=69.53 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=62.3
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+.+-++|+||+..-....++.+...+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456689999996655566777777776655567777777653 222211 12358999999999988888775 1 1
Q ss_pred ccchhHHHHHHHHHHHhCCChH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQ 315 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Pl 315 (1189)
. .+.+..|++.++|.|.
T Consensus 170 ~-----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 S-----EEAAELLLALAGGSPG 186 (188)
T ss_pred C-----HHHHHHHHHHcCCCcc
Confidence 1 3457899999999885
No 87
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.62 E-value=0.00085 Score=76.39 Aligned_cols=151 Identities=18% Similarity=0.165 Sum_probs=80.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+.++|++|+|||++|+++++..... | +.+. ...+..... + .........++..-...+.
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l~~~-~-----~~v~----~~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~ 217 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHETNAT-F-----IRVV----GSELVRKYI---G------EGARLVREIFELAKEKAPS 217 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhCCCC-E-----Eecc----hHHHHHHhh---h------HHHHHHHHHHHHHHhcCCc
Confidence 346699999999999999999853321 2 2221 111111110 0 0001111111222234568
Q ss_pred EEEecCCCCC-----------Chh---hHHhhccccCC--CCCCcEEEEEcCCchhhhc-----cCCCceEeCCCCChhh
Q 048135 220 LIVLDNVWSK-----------NYG---LWKTLKSPFMA--GTPGSKIIVTTRSVDVALT-----LGPIDYYNLELLSDDD 278 (1189)
Q Consensus 220 LlvlDdv~~~-----------~~~---~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~-----~~~~~~~~l~~L~~~~ 278 (1189)
+|++||++.- +.+ .+..+...+.. ...+.+||.||...+.... ......+++...+.++
T Consensus 218 il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 218 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred EEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence 9999998541 111 12222222221 1246778888875432211 1224578999999999
Q ss_pred HHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCCh
Q 048135 279 CWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLP 314 (1189)
Q Consensus 279 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 314 (1189)
..++|..++.+.... ...++ ..+++.+.|..
T Consensus 298 r~~Il~~~~~~~~l~-~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 298 RLEILKIHTRKMKLA-EDVDL----EAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHhcCCCC-ccCCH----HHHHHHcCCCC
Confidence 999999887543211 11122 46667776654
No 88
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00072 Score=79.18 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=66.8
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|+|+|..-....++.+...+.....+.++|++|.+.. +... ......+++++++.++..+.+.+.+-..+.
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI 195 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI 195 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC
Confidence 35666899999976665677777777666555667777776532 2211 123368999999999998888877644332
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
... .+....|++.++|.+-.+.
T Consensus 196 ~id----~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 196 AAD----QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CCC----HHHHHHHHHHcCCCHHHHH
Confidence 211 3456789999999875443
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=97.62 E-value=0.00031 Score=74.09 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=89.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|..|+|||.||+++.+....+ -..++|++.. ++... . ..+.+.+++-. +
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~------~~~~~--------------~----~~~~~~~~~~d-~ 100 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLA------ELLDR--------------G----PELLDNLEQYE-L 100 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHH------HHHhh--------------h----HHHHHhhhhCC-E
Confidence 44699999999999999998642211 2345666543 22111 0 12223333322 6
Q ss_pred EEecCCCCCC-hhhHHh-hccccCC-CCCCcEEEEEcCCchhh---------hccCCCceEeCCCCChhhHHHHHHHhhc
Q 048135 221 IVLDNVWSKN-YGLWKT-LKSPFMA-GTPGSKIIVTTRSVDVA---------LTLGPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 221 lvlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~v~---------~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
+|+||+.... ...|+. +...+.. ...|.+||+|++...-. ..+....+++++++++++-.+.+.+++.
T Consensus 101 LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 101 VCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred EEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 8899995321 134443 3332221 12466788888753221 1222335799999999999999987764
Q ss_pred cCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 048135 289 ENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLL 324 (1189)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L 324 (1189)
..+ ...+ +++..-|++++.|-.-++..+-..|
T Consensus 181 ~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 181 RRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 432 1111 4667788888888766655444333
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.62 E-value=0.00082 Score=70.72 Aligned_cols=122 Identities=25% Similarity=0.290 Sum_probs=81.2
Q ss_pred EEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEEe
Q 048135 144 LVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIVL 223 (1189)
Q Consensus 144 I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Llvl 223 (1189)
.||++|+||||||+.+.+..+... ..||..|..-.-..-.+.|.++.. =...+.++|.+|.+
T Consensus 167 lWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~krkTilFi 228 (554)
T KOG2028|consen 167 LWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLTKRKTILFI 228 (554)
T ss_pred EecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccchHHHHHHHHHHH---------------HHHhhhcceeEEEe
Confidence 799999999999999987543332 557777766544444455554421 12345678999999
Q ss_pred cCCCCCChhhHHhhccccCCCCCCcEEEE--EcCCchhhh---ccCCCceEeCCCCChhhHHHHHHHh
Q 048135 224 DNVWSKNYGLWKTLKSPFMAGTPGSKIIV--TTRSVDVAL---TLGPIDYYNLELLSDDDCWSIFEKH 286 (1189)
Q Consensus 224 Ddv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~---~~~~~~~~~l~~L~~~~~~~lf~~~ 286 (1189)
|.|..-+..+-+.+ +|.-.+|+-++| ||.++.... .+....++-++.|..++...++.+.
T Consensus 229 DEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 229 DEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 99965333333333 455566887776 777664321 1233368999999999999988874
No 91
>CHL00181 cbbX CbbX; Provisional
Probab=97.61 E-value=0.0015 Score=70.80 Aligned_cols=132 Identities=12% Similarity=0.065 Sum_probs=71.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCc-CceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGF-NPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+.++|.+|+||||+|+.++......++ ...-|+.++. .. +.....+.. .......+.+ ...-+
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~---a~ggV 125 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKK---AMGGV 125 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHH---ccCCE
Confidence 458999999999999999763221121 1122555541 12 222221111 1111222222 12358
Q ss_pred EEecCCCCC---------ChhhHHhhccccCCCCCCcEEEEEcCCchhhhcc--------CCCceEeCCCCChhhHHHHH
Q 048135 221 IVLDNVWSK---------NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL--------GPIDYYNLELLSDDDCWSIF 283 (1189)
Q Consensus 221 lvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~lf 283 (1189)
|++|++..- ..+..+.+...+.....+.+||+++....+.... .....++.++++.+|..+++
T Consensus 126 LfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~ 205 (287)
T CHL00181 126 LFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIA 205 (287)
T ss_pred EEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHH
Confidence 999999531 1123344444444444456777777544332211 12357899999999999998
Q ss_pred HHhhcc
Q 048135 284 EKHAFE 289 (1189)
Q Consensus 284 ~~~a~~ 289 (1189)
...+-.
T Consensus 206 ~~~l~~ 211 (287)
T CHL00181 206 KIMLEE 211 (287)
T ss_pred HHHHHH
Confidence 887643
No 92
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00069 Score=79.35 Aligned_cols=104 Identities=18% Similarity=0.104 Sum_probs=66.4
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEE-EcCCchhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIV-TTRSVDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|+|++..-....++.+...+......+.+|+ ||....+... ......+++++++.++..+.+.+.+-..+.
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 45677999999976666678888877776555666664 5443333322 222368999999999988777765432221
Q ss_pred cccchhHHHHHHHHHHHhCCCh-HHHHHHHh
Q 048135 293 ASAHQNLELIHAKVVEKCKGLP-QAAANLGG 322 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~P-lai~~~g~ 322 (1189)
.. -.+....|++.++|.+ -|+..+-.
T Consensus 197 ~~----e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 197 NS----DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 1344577899999966 45544443
No 93
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.58 E-value=0.00088 Score=76.05 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=61.3
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+.+-++|+||+..-....+..+...+......+++|+||.... +.... .....+++.+++.++..+.+.+.+-..+..
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~ 203 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD 203 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3445899999965443445555554444444577887775432 22211 223578889999999988888876433222
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
. -.+....+++.++|.+-.+.
T Consensus 204 ~----~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 204 Y----DDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred C----CHHHHHHHHHHcCCCHHHHH
Confidence 1 13466788899988765544
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.58 E-value=0.00042 Score=73.27 Aligned_cols=151 Identities=20% Similarity=0.148 Sum_probs=84.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+.|+|..|+|||+||+++++.....+. ...+++..... ..+ ... ...-
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~-~~~~i~~~~~~------~~~----------------------~~~-~~~~ 92 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGR-NARYLDAASPL------LAF----------------------DFD-PEAE 92 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEEehHHhH------HHH----------------------hhc-ccCC
Confidence 34569999999999999999874322212 23344332211 000 011 2234
Q ss_pred EEEecCCCCCChhhHHhhccccCCC-CCCc-EEEEEcCCchhhh--------ccCCCceEeCCCCChhhHHHHHHHhhcc
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAG-TPGS-KIIVTTRSVDVAL--------TLGPIDYYNLELLSDDDCWSIFEKHAFE 289 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 289 (1189)
++|+||+..-....-+.+...+... ..|. .||+|++...... .+.....+++.++++++-.+++.+.+-.
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 7889999543222223333333211 2344 3666666433222 2222368899999998777776664422
Q ss_pred CCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 048135 290 NRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLL 324 (1189)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L 324 (1189)
.+ ... -++....+++.+.|.+..+..+-..+
T Consensus 173 ~~-v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 173 RG-LQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cC-CCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11 111 13566788889999998887666555
No 95
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.56 E-value=7.1e-06 Score=85.78 Aligned_cols=238 Identities=21% Similarity=0.200 Sum_probs=131.5
Q ss_pred cccCcccccEEeccccccc-----cccccccCCCCCcEEeccCc---cccccCchhh-------hccccCCcccccCCcc
Q 048135 542 SIGRLMHLRYLDMSNTAIS-----SLPESTCSLINLQTLLLRRC---FYLMKWPSKV-------MNLINLRHLDITDVHL 606 (1189)
Q Consensus 542 ~i~~l~~L~~L~L~~~~i~-----~LP~~i~~L~~L~~L~L~~~---~~l~~lp~~i-------~~L~~L~~L~l~~~~~ 606 (1189)
.+-.+..+.+++|++|.+. .+-+.+.+.++|+.-+++.- +-..++|+.+ ...++|+.|+|++|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3456778999999999776 35566777889999998852 1123455443 3456899999999873
Q ss_pred cccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcc---------hHHHhccCCCC
Q 048135 607 IKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAY---------SQSVLGMLKSH 677 (1189)
Q Consensus 607 ~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------~~~~l~~l~~~ 677 (1189)
...-++++ ...++.+.+|++|.|..|+-.... +..+.......
T Consensus 105 G~~g~~~l----------------------------~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~ 156 (382)
T KOG1909|consen 105 GPKGIRGL----------------------------EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASK 156 (382)
T ss_pred CccchHHH----------------------------HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCC
Confidence 33323222 122445566666666655421111 11234445667
Q ss_pred CCcceEEEeeeCCCCCCCCCCC---CCCCceeEEEecCCCCC-CCC----CCCCcccCcceEeeccccCceEeCccccCC
Q 048135 678 TSLKELTIKCYGGTRFPSWVGD---PSFSNIVMITLESCTNC-RSL----PSLGLLCSLKALTIREMTELKIIGSEIYGD 749 (1189)
Q Consensus 678 ~~L~~L~l~~~~~~~~p~~~~~---~~~~~L~~L~l~~~~~~-~~l----p~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 749 (1189)
++|+.+....|.....+.-... ...+.|+.+.+..|..- ... ..+..+|+|+.|+|+++..-.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e-gs~~--- 232 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE-GSVA--- 232 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH-HHHH---
Confidence 7888888877766554421100 12356666666655421 111 0345566666666665421110 0000
Q ss_pred CCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccC--------CCCCCCCCccEEEEeccCCcc
Q 048135 750 GCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSG--------RLPDHLPSLKKLVISECAQFE 821 (1189)
Q Consensus 750 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--------~~p~~l~~L~~L~l~~c~~~~ 821 (1189)
+ ......+|+|++|++++| .+.. .+-...|+|+.|.+.+|....
T Consensus 233 -------------L--------------akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 233 -------------L--------------AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred -------------H--------------HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 0 011445667777777777 4431 112246677777777765432
Q ss_pred c-------ccCCCCccceEEEecCC
Q 048135 822 V-------SFASLPVLSDLSIDGCK 839 (1189)
Q Consensus 822 ~-------~~~~l~~L~~L~l~~~~ 839 (1189)
. .+...|.|..|++++|.
T Consensus 285 da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 285 DAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHHHhcchhhHHhcCCccc
Confidence 2 23446777777777765
No 96
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=4.7e-06 Score=84.66 Aligned_cols=162 Identities=13% Similarity=0.119 Sum_probs=79.8
Q ss_pred cccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCC---CCCCCcCeEEEeccCCCccccccccCCCc
Q 048135 988 VSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKG---GLPNTLSRISIGKCENLVALPDRMHNLSS 1064 (1189)
Q Consensus 988 l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~---~~~~~L~~L~l~~c~~l~~lp~~~~~l~~ 1064 (1189)
++.|.+|+.+.+.++.....+-..+..-.+|+.|+|+.|+.+++.... ..++.|..|+++.|...+..-.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt------- 278 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT------- 278 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh-------
Confidence 456777777777777666666555666667777777777766654321 1233666667776644332100
Q ss_pred cccccccCCCCCcceeeccCCCcc--cccccCCCCCCccceEEEcccCCccc-CccccccCCCCCccceeecccCCCCcc
Q 048135 1065 LQELEICFPTSLTTLTIEDFNLYK--PLIEWGLHKLTALRNLSIGGCLDAVS-FPQEELGMMLPTSLTKLAIAKFPELKH 1141 (1189)
Q Consensus 1065 L~~L~l~~~~~L~~L~l~~~~~l~--~l~~~~l~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~ 1141 (1189)
.+--...++|+.|+++++...- +-..--...+|+|..|||++|..+.. ... .+..++.|++|.++.|..+.-
T Consensus 279 --v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~---~~~kf~~L~~lSlsRCY~i~p 353 (419)
T KOG2120|consen 279 --VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---EFFKFNYLQHLSLSRCYDIIP 353 (419)
T ss_pred --HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH---HHHhcchheeeehhhhcCCCh
Confidence 0000122344444444442211 00000123456666666666555443 111 123456666666666644321
Q ss_pred cCcCCCCCCCccCceeeccC
Q 048135 1142 LSSKGFRNLTSLDLLRIRNC 1161 (1189)
Q Consensus 1142 l~~~~l~~l~~L~~L~l~~c 1161 (1189)
=.--.+...|+|.+|++.+|
T Consensus 354 ~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 354 ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHeeeeccCcceEEEEeccc
Confidence 00012445566666666665
No 97
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=2e-05 Score=91.54 Aligned_cols=100 Identities=27% Similarity=0.356 Sum_probs=65.2
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
+..+++|..|++.+|.|..+...+..+.+|++|++++|.|..+. .+..|..|+.|++.+| .+..++ ++..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhcc-CCccchhhhcc
Confidence 45667777777777777777655677777777777777777774 3666777777777776 455553 35557777777
Q ss_pred cccCCcccccCCCC-CCCCCCCcee
Q 048135 600 DITDVHLIKEMPLG-MEEWKCLQTL 623 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~-i~~L~~L~~L 623 (1189)
++++|. +..+... ...+.+++.+
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHH
Confidence 777776 4444332 2444444444
No 98
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.53 E-value=0.00043 Score=84.19 Aligned_cols=146 Identities=21% Similarity=0.287 Sum_probs=80.0
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH--ccCce
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI--AGQKF 219 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~ 219 (1189)
-++|++|+||||+|+.+++..... |. .+.... ... +..+......+.+ .+++.
T Consensus 56 LL~GPpGtGKTTLA~aIA~~~~~~-f~-----~lna~~~~i~------------------dir~~i~~a~~~l~~~~~~~ 111 (725)
T PRK13341 56 ILYGPPGVGKTTLARIIANHTRAH-FS-----SLNAVLAGVK------------------DLRAEVDRAKERLERHGKRT 111 (725)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCc-ce-----eehhhhhhhH------------------HHHHHHHHHHHHhhhcCCce
Confidence 489999999999999999753211 31 111100 000 1111112222222 24677
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEE--cCCch--hhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCC--
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVT--TRSVD--VALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRD-- 292 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~-- 292 (1189)
++|+||++.-....++.+...+. .|+.++|+ |++.. +... ......+++++++.++..+++.+.+-....
T Consensus 112 IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~ 188 (725)
T PRK13341 112 ILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGY 188 (725)
T ss_pred EEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999997655556666654443 35555553 34321 1111 112357999999999999998876531000
Q ss_pred -cccchhHHHHHHHHHHHhCCChH
Q 048135 293 -ASAHQNLELIHAKVVEKCKGLPQ 315 (1189)
Q Consensus 293 -~~~~~~~~~~~~~i~~~c~g~Pl 315 (1189)
.....--++....|++.+.|..-
T Consensus 189 g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 189 GDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred CCcccCCCHHHHHHHHHhCCCCHH
Confidence 00001113456778888887643
No 99
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00059 Score=77.62 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=65.2
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEE-EcCCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIV-TTRSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.++.-++|+|+++.-..+.++.+...+........+|. ||....+...+ .-...|.+.+++.++..+.+.+.+-..+.
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 45666999999987777788888777755434555454 44444443322 22367999999999988888877643322
Q ss_pred cccchhHHHHHHHHHHHhCCChHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQA 316 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Pla 316 (1189)
.. -.+....|++.++|.+--
T Consensus 199 ~~----e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 199 QY----DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred CC----CHHHHHHHHHHcCChHHH
Confidence 11 134567899999998843
No 100
>PRK06620 hypothetical protein; Validated
Probab=97.50 E-value=0.00074 Score=69.85 Aligned_cols=135 Identities=10% Similarity=-0.007 Sum_probs=76.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+-|||+.|+|||+||+++.+.... .++. ..+.. + +.. +..-+
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~--~~~~~---------------------~-------~~~-~~~d~ 88 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNA------YIIK--DIFFN---------------------E-------EIL-EKYNA 88 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCC------EEcc--hhhhc---------------------h-------hHH-hcCCE
Confidence 3459999999999999998774321 1111 00000 0 011 12357
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhh-------hccCCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVA-------LTLGPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-------~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++||+..-.....-.+...+. ..|..||+|++..... ..+...-+++++++++++-.++..+.+... ..
T Consensus 89 lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l 165 (214)
T PRK06620 89 FIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SV 165 (214)
T ss_pred EEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CC
Confidence 8899995321111222222222 2466899998854332 222333489999999999888888776422 11
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
..+ +++..-|++++.|---.+.
T Consensus 166 ~l~---~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 166 TIS---RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCC---HHHHHHHHHHccCCHHHHH
Confidence 111 4566777777777654443
No 101
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.49 E-value=0.00086 Score=72.39 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=65.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+.++|++|+||||+|+.+++...... -....++.++.. ++ .....+ .........+.+. ..-+
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l----~~~~~g-----~~~~~~~~~~~~a---~~~V 108 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DL----VGEYIG-----HTAQKTREVIKKA---LGGV 108 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hh----hhhhcc-----chHHHHHHHHHhc---cCCE
Confidence 45899999999999999876321111 111123333221 11 111110 0011112222221 2348
Q ss_pred EEecCCCCCC--------hhhHHhhccccCCCCCCcEEEEEcCCchhhhc------c--CCCceEeCCCCChhhHHHHHH
Q 048135 221 IVLDNVWSKN--------YGLWKTLKSPFMAGTPGSKIIVTTRSVDVALT------L--GPIDYYNLELLSDDDCWSIFE 284 (1189)
Q Consensus 221 lvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~--~~~~~~~l~~L~~~~~~~lf~ 284 (1189)
|++|+++.-. .+..+.+...+........+|+++...+.... . .....+++++++.+|-.+++.
T Consensus 109 L~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 109 LFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred EEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHH
Confidence 8999995411 12344455444443333355555544332110 0 112467889999999999988
Q ss_pred Hhhc
Q 048135 285 KHAF 288 (1189)
Q Consensus 285 ~~a~ 288 (1189)
+.+.
T Consensus 189 ~~~~ 192 (261)
T TIGR02881 189 RMVK 192 (261)
T ss_pred HHHH
Confidence 7764
No 102
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0016 Score=76.22 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=66.8
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEE-EcCCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIV-TTRSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.++.-++|||+++.-....++.+...+..-..+.++|+ ||....+...+ +-...|.++.++.++..+.+.+.+-..+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 45566999999987777788888877765545556555 55444444322 12268999999999999888876533221
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
.. -.+....|++.++|.|.....
T Consensus 202 ~~----d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 202 AH----EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHH
Confidence 11 123457889999999864443
No 103
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.45 E-value=0.0025 Score=64.26 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=43.6
Q ss_pred EEEEEcCCchhhhccCCC--ceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 048135 249 KIIVTTRSVDVALTLGPI--DYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLL 324 (1189)
Q Consensus 249 ~iivTtr~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L 324 (1189)
-|=.|||...+....... -+.+++..+.+|-.++..+.|-.-+- +--++.+.+|++++.|-|--..-+-...
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 344688876655444332 24589999999999999887743322 1225678999999999996554443333
No 104
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.43 E-value=3.4e-05 Score=69.33 Aligned_cols=91 Identities=26% Similarity=0.328 Sum_probs=73.4
Q ss_pred hcCCCcceEEEeccCCCcccCcccc-CcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIG-RLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRH 598 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 598 (1189)
+.+...|...+|++|.+..+|+.|. +.+.+..|+|++|.|.++|..+..++.|+.|+++.| .+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 4556778888899999988888774 455888899999999999988888999999999887 57778888888888888
Q ss_pred ccccCCcccccCCC
Q 048135 599 LDITDVHLIKEMPL 612 (1189)
Q Consensus 599 L~l~~~~~~~~~p~ 612 (1189)
|+..++. ...+|-
T Consensus 128 Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 128 LDSPENA-RAEIDV 140 (177)
T ss_pred hcCCCCc-cccCcH
Confidence 8887776 555553
No 105
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.43 E-value=1.1e-05 Score=72.38 Aligned_cols=98 Identities=17% Similarity=0.266 Sum_probs=82.0
Q ss_pred cceEEEeccCCCcccCcc---ccCcccccEEeccccccccccccccC-CCCCcEEeccCccccccCchhhhccccCCccc
Q 048135 525 KLRVLSLKSYHIIELPNS---IGRLMHLRYLDMSNTAISSLPESTCS-LINLQTLLLRRCFYLMKWPSKVMNLINLRHLD 600 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~---i~~l~~L~~L~L~~~~i~~LP~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 600 (1189)
.+-.+||+.|++..+++. +....+|...+|++|.++..|+.+.. .+-+.+|++.+| .+.++|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 466789999998777654 56777889999999999999998865 458999999998 8999999999999999999
Q ss_pred ccCCcccccCCCCCCCCCCCceeC
Q 048135 601 ITDVHLIKEMPLGMEEWKCLQTLS 624 (1189)
Q Consensus 601 l~~~~~~~~~p~~i~~L~~L~~L~ 624 (1189)
++.|. +...|.-|..|.+|-.|+
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhc
Confidence 99998 777787777666666663
No 106
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0015 Score=77.93 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=66.8
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|||+++.-.....+.+...+.......++|.+|.+ ..+...+ .-...|++++++.++..+.+.+.+-..+.
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 466779999999776667788887777665455666655544 4443221 22368999999999999888876532221
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
.. -.+....|++.++|.+-.+..
T Consensus 197 ~~----e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 197 PF----EPRALQLLARAADGSMRDALS 219 (647)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHH
Confidence 11 134457899999998864443
No 107
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.00061 Score=76.36 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=67.7
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+.+-++|+||++.-+....+.+...+.....++.+|++|.+.+ +...+ .....+.+.+++.++..+.+..... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---D- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---c-
Confidence 4567899999988777788888877766555677777777654 32222 2236899999999999999887531 1
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
..+ +....+++.++|.|.....+
T Consensus 216 -~~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 216 -LPD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -CCH---HHHHHHHHHcCCCHHHHHHH
Confidence 111 11267899999999866544
No 108
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0014 Score=76.19 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=63.6
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-.....+.+...+........+|++|.+ ..+.... .....+++.+++.++....+.+.+...+..
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 45669999999654444556666665544334444444443 3333222 223689999999999888888876433221
Q ss_pred ccchhHHHHHHHHHHHhCC-ChHHHHHHHhhh
Q 048135 294 SAHQNLELIHAKVVEKCKG-LPQAAANLGGLL 324 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g-~Plai~~~g~~L 324 (1189)
.. .+....|+++++| .+.|+..+-...
T Consensus 196 i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 196 ID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 11 3456778887765 467777665543
No 109
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0034 Score=64.46 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=79.3
Q ss_pred EEEEcCCchhhhccCC--CceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCC
Q 048135 250 IIVTTRSVDVALTLGP--IDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCK 327 (1189)
Q Consensus 250 iivTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~ 327 (1189)
|=.|||.-.+...... .-+.+++..+.+|-.+...+.|-.-+-.. -++-+.+|+++..|-|--..-+-+..+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIAnRLLrRVR-- 228 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIANRLLRRVR-- 228 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHHHHHHHHHH--
Confidence 3368886555433321 24678888999999999998873322211 245678999999999954433332222
Q ss_pred CChhHHHHHHhhhccCcCCCCChHHHHHHhHhcCchhHHHHHhHhccCCCCceechHHHHHHHHHcCCcccCccchhHHH
Q 048135 328 QRDDEWQGILKSRIWDLSEESDILPVLRLSYHHLPSHLKRCFSYSAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMED 407 (1189)
Q Consensus 328 ~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~ 407 (1189)
++..+.....-...-.+.....|.+-=.+|+...+..+..+.-.+.|-.+--+.+.... | .+..+.||
T Consensus 229 ----Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~l---g-----e~~~TiEd 296 (332)
T COG2255 229 ----DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAAL---G-----EDRDTIED 296 (332)
T ss_pred ----HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHh---c-----CchhHHHH
Confidence 22222221000000011223334444445565555555555444444444433333211 1 12345555
Q ss_pred HHHHHHHHHHhccccccc
Q 048135 408 LGHKYFRDLLSRSIFQKS 425 (1189)
Q Consensus 408 ~~~~~~~~L~~~~ll~~~ 425 (1189)
+-+=| |+..++++..
T Consensus 297 v~EPy---Liq~gfi~RT 311 (332)
T COG2255 297 VIEPY---LIQQGFIQRT 311 (332)
T ss_pred HHhHH---HHHhchhhhC
Confidence 55443 6777888764
No 110
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0012 Score=76.38 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=89.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+-|+|..|+|||+||+++.+........ .++|++. .++..++...+... ..+ ..++..+.+.-+
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~~~~dv 197 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYRKKVDV 197 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHHhcCCE
Confidence 4599999999999999999854322233 3455543 44556665555321 122 233334444568
Q ss_pred EEecCCCCCC-hhhH-HhhccccCC-CCCCcEEEEEcC-Cchhh--------hccCCCceEeCCCCChhhHHHHHHHhhc
Q 048135 221 IVLDNVWSKN-YGLW-KTLKSPFMA-GTPGSKIIVTTR-SVDVA--------LTLGPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 221 lvlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtr-~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
|++||++.-. ...+ +.+...+.. ...|..||+||. .+.-. ..+.....+++++.+.++-.+++.+.+.
T Consensus 198 LlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred EEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 9999996321 0111 122222211 012456888875 32211 1222335789999999999999988874
Q ss_pred cCCCcccchhHHHHHHHHHHHhCCChHHHH
Q 048135 289 ENRDASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
..... .+ +++..-|++.+.|..-.+.
T Consensus 278 ~~~~~-l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 278 IEHGE-LP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred hcCCC-CC---HHHHHHHHhccccCHHHHH
Confidence 32211 11 4566778888777644433
No 111
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0037 Score=69.99 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=107.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCc-eEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHc--cCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNP-KAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIA--GQK 218 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~ 218 (1189)
+.|+|..|.|||+.++.|....+...-.. +++|.+-...+..+++..|+.+++..........+....+.+.+. ++.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence 56999999999999999998644332222 788999889999999999999997544444555667777777774 578
Q ss_pred eEEEecCCCCCChhhHHhhccccCCCC-CCcEEE--EEcCCchhhhccCC-------CceEeCCCCChhhHHHHHHHhhc
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPFMAGT-PGSKII--VTTRSVDVALTLGP-------IDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l~~~~-~gs~ii--vTtr~~~v~~~~~~-------~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
+++|||+++.-....-+.+...+.... ..++|+ ..+-+......+.. ...+..++-+.+|-.+.+..++-
T Consensus 125 ~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 125 VIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred EEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 999999995421110012222222221 145444 34444333322211 12366778888888888887763
Q ss_pred cC-CCcccchhHHHHHHHHHHHhCC-ChHHHHH
Q 048135 289 EN-RDASAHQNLELIHAKVVEKCKG-LPQAAAN 319 (1189)
Q Consensus 289 ~~-~~~~~~~~~~~~~~~i~~~c~g-~Plai~~ 319 (1189)
.. .+....++..+++..++..-+| .=.||..
T Consensus 205 ~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 205 EGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 21 1222233444444555555554 3344443
No 112
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.34 E-value=0.0032 Score=70.88 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=85.8
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEe--cCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCV--SEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.|+|..|+||||+|+.+.+......+.. .++.+ +.......+ .+.+..+..... .-...+-
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~~~-~~~i~~~~~~~~--------------~~~~~~~ 104 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGIDVI-RNKIKEFARTAP--------------VGGAPFK 104 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchHHH-HHHHHHHHhcCC--------------CCCCCce
Confidence 35999999999999999987432222321 12222 221111111 111111110000 0012355
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCcccch
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQ 297 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~ 297 (1189)
++++|+++.-....++.+...+......+++|+++... .+.... .....+++.+++.++....+.+.+...+....
T Consensus 105 vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~-- 182 (319)
T PRK00440 105 IIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEIT-- 182 (319)
T ss_pred EEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 89999986544444555655555444556777776432 221111 12247899999999998888887643332111
Q ss_pred hHHHHHHHHHHHhCCChHHH
Q 048135 298 NLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 298 ~~~~~~~~i~~~c~g~Plai 317 (1189)
.+....+++.++|.+--+
T Consensus 183 --~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 183 --DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred --HHHHHHHHHHcCCCHHHH
Confidence 345678899999987653
No 113
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.34 E-value=0.003 Score=73.22 Aligned_cols=157 Identities=14% Similarity=0.111 Sum_probs=88.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCc-CceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGF-NPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+.|+|..|+|||+||+++++....+.. ..+++++ ..++...+...+... ..+ .+++.+++ .-+
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~----~~~~~~~~-~dl 202 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KME----EFKEKYRS-VDL 202 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHH----HHHHHHHh-CCE
Confidence 459999999999999999985432211 2344553 334444555544321 222 23333433 348
Q ss_pred EEecCCCCCChh-hH-HhhccccCCC-CCCcEEEEEcCCc-h--------hhhccCCCceEeCCCCChhhHHHHHHHhhc
Q 048135 221 IVLDNVWSKNYG-LW-KTLKSPFMAG-TPGSKIIVTTRSV-D--------VALTLGPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 221 lvlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
|||||++.-... .+ +.+...+... ..|..||+|+... . +...+.....+++++.+.++-.+++.+.+-
T Consensus 203 LiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 203 LLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 889999642111 11 2222222110 1345678877642 1 122222234789999999999999998875
Q ss_pred cCCCcccchhHHHHHHHHHHHhCCChHHHH
Q 048135 289 ENRDASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
..+... -+++..-|++.+.|.+-.+.
T Consensus 283 ~~~~~l----~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 283 EEGLEL----PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HcCCCC----CHHHHHHHHHhcCCCHHHHH
Confidence 432211 14566778888888765443
No 114
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.34 E-value=3.9e-05 Score=89.15 Aligned_cols=99 Identities=27% Similarity=0.403 Sum_probs=78.5
Q ss_pred CCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccc
Q 048135 522 KFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDI 601 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 601 (1189)
.+..+..+.+..+.+..+-..++.+.+|.+|++.+|.|+.+...+..+++|++|++++| .+..+. ++..|+.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence 45566777788888888666688999999999999999999876889999999999998 677774 4888899999999
Q ss_pred cCCcccccCCCCCCCCCCCceeC
Q 048135 602 TDVHLIKEMPLGMEEWKCLQTLS 624 (1189)
Q Consensus 602 ~~~~~~~~~p~~i~~L~~L~~L~ 624 (1189)
.+|. +..++ ++..++.|+.++
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccCc-chhcc-CCccchhhhccc
Confidence 9997 55543 344455555553
No 115
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0012 Score=75.72 Aligned_cols=170 Identities=13% Similarity=0.201 Sum_probs=91.6
Q ss_pred eEEccCCCcHHHHHHHHhcCccccC-cCceEEEE-ecCCcCHHHHHHHHHHHccCC-----CCCCCChhHHHHHHHHHH-
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVC-VSEDFDVLKITKAILESVTSS-----PSNLKDLNQVQIQLEKAI- 214 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~l- 214 (1189)
-++|+.|+||||+|..+.+...... ++...|.. +......-...+.+....... .......+++.+ +.+.+
T Consensus 42 lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~ 120 (397)
T PRK14955 42 IFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVR 120 (397)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHh
Confidence 3899999999999998876432211 11111111 011111111222222111100 001112333332 22322
Q ss_pred ----ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc-CCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhc
Q 048135 215 ----AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT-RSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 215 ----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
.+++-++|+|++..-....++.+...+....+.+.+|++| +...+.... .....++++++++++..+.+...+-
T Consensus 121 ~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 121 YGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred hchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 3455688999996655567888877776655567766655 433333221 1225788999999998887777653
Q ss_pred cCCCcccchhHHHHHHHHHHHhCCChHHH
Q 048135 289 ENRDASAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
..+... -.+.+..|++.++|.+--+
T Consensus 201 ~~g~~i----~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 201 AEGISV----DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 222111 1345788999999977533
No 116
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.30 E-value=0.004 Score=71.13 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcC
Q 048135 102 GMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFD 181 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~ 181 (1189)
+++..+++++..++.-......|.-. + ...++.+-++|++|+|||++|+++++..... |+.++.
T Consensus 135 Gl~~~~~~l~~~i~~pl~~~~~~~~~---g----~~~p~gvLL~GppGtGKT~lAkaia~~~~~~------~i~v~~--- 198 (389)
T PRK03992 135 GLEEQIREVREAVELPLKKPELFEEV---G----IEPPKGVLLYGPPGTGKTLLAKAVAHETNAT------FIRVVG--- 198 (389)
T ss_pred CcHHHHHHHHHHHHHHhhCHHHHHhc---C----CCCCCceEEECCCCCChHHHHHHHHHHhCCC------EEEeeh---
Confidence 56666676666654433322222100 0 1123446799999999999999998743211 232321
Q ss_pred HHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEEecCCCCC-----------ChhhHHhhccc---cCC--CC
Q 048135 182 VLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIVLDNVWSK-----------NYGLWKTLKSP---FMA--GT 245 (1189)
Q Consensus 182 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------~~~~~~~l~~~---l~~--~~ 245 (1189)
..+ .....+ .....+...+...-...+.+|+|||++.- +.+.+..+... +.. ..
T Consensus 199 -~~l----~~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SEL----VQKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHH----hHhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 111110 01111111122222345689999999541 11112222222 211 12
Q ss_pred CCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHHHHHHhhc
Q 048135 246 PGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 246 ~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
.+.+||.||...+..... .....++++..+.++..++|..++.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 356788788765432211 1235789999999999999998764
No 117
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0035 Score=69.90 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=65.0
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc-CCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT-RSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-+....+.+...+........+|++| +...+.... +....+++.+++.++..+.+.+.+... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~--~ 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ--G 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc--C
Confidence 566789999998777677777776666544445555444 433332222 223689999999999999998743211 1
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
--.+....+++.++|.|.....+
T Consensus 218 ----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 218 ----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11334678999999999866544
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0033 Score=71.14 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=63.7
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-.....+.+...+....++..+|++|.+. .+...+ +-...+.+.+++.++..+.+.+.. + .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~-~ 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---G-V 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---C-C
Confidence 445588889997766666677776666555566666666653 333222 223689999999999988887532 1 1
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
+ .+.+..++..++|.|.....+
T Consensus 192 --~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 --D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred --C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 234678899999999755433
No 119
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.26 E-value=0.0047 Score=71.63 Aligned_cols=166 Identities=16% Similarity=0.092 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhc---cccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccC----cCceEEE
Q 048135 102 GMKYKIKSITCRLEEICKQRVD---LGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEG----FNPKAWV 174 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~----f~~~~wv 174 (1189)
++...+++++..+..-...... +++. .++-+-++|++|.|||++|+++++...... .....|+
T Consensus 186 Gl~~~i~~i~~~v~lp~~~~~l~~~~gl~----------~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 186 GLDSQIEQIRDAVELPFLHPELYREYDLK----------PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhccCC----------CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 3556666666665533222222 2221 234467999999999999999998643221 1233444
Q ss_pred EecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH-HccCceEEEecCCCCCC-------hhh-----HHhhcccc
Q 048135 175 CVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA-IAGQKFLIVLDNVWSKN-------YGL-----WKTLKSPF 241 (1189)
Q Consensus 175 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~-------~~~-----~~~l~~~l 241 (1189)
.+... +++....+. .......+....++. -.+++++|+||+++.-. ... ..++...+
T Consensus 256 ~v~~~--------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 256 NIKGP--------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred eccch--------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 44321 111111000 000111122222222 13478999999996310 011 12333333
Q ss_pred CCC--CCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHHHHHHhh
Q 048135 242 MAG--TPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 242 ~~~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
... ..+..||.||...+..... ..+..++++..+.++..++|.++.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 221 1344556666555433211 223568999999999999999885
No 120
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0027 Score=73.30 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=65.7
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcC-Cchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTR-SVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|++..-.....+.+...+....+.+++|++|. .+.+...+ .....+++++++.++..+.+.+.+...+..
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 4566899999966555667777777766556677666553 34443322 233679999999999998888877543322
Q ss_pred ccchhHHHHHHHHHHHhCCChHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
.. .+....|++.++|.+-.+
T Consensus 195 i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 195 HD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred CC----HHHHHHHHHHcCCCHHHH
Confidence 11 344678999999887543
No 121
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0039 Score=73.62 Aligned_cols=106 Identities=11% Similarity=0.119 Sum_probs=69.7
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|+|+++.-....++.|...+........+|++|.+ ..+...+ .....++++.++.++..+.+...+...+.
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 356679999999766666777777776554345566665554 3343221 22357899999999999888876654332
Q ss_pred cccchhHHHHHHHHHHHhCCCh-HHHHHHHhhh
Q 048135 293 ASAHQNLELIHAKVVEKCKGLP-QAAANLGGLL 324 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~P-lai~~~g~~L 324 (1189)
.. -.+.+..|++.++|.+ .|+..+...+
T Consensus 197 ~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 DY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 1345678899999965 6777776554
No 122
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0031 Score=73.99 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=64.2
Q ss_pred CceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcC-Cchhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCcc
Q 048135 217 QKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTR-SVDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDAS 294 (1189)
Q Consensus 217 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~ 294 (1189)
++-++|+|+++.-..+.++.+...+......+.+|++|. ...+... ......+++.+++.++....+...+-..+...
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 344699999976555677777776665444566665553 3333222 22236899999999999888887654322111
Q ss_pred cchhHHHHHHHHHHHhCCCh-HHHHHHHh
Q 048135 295 AHQNLELIHAKVVEKCKGLP-QAAANLGG 322 (1189)
Q Consensus 295 ~~~~~~~~~~~i~~~c~g~P-lai~~~g~ 322 (1189)
. .+.+..+++.++|.+ .|+..+-.
T Consensus 199 s----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 199 E----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred C----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 344678899999966 45544444
No 123
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.003 Score=75.17 Aligned_cols=100 Identities=12% Similarity=0.132 Sum_probs=66.0
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
++.-++|||+|+.-....++.+...+.......++|++|.+ ..+... ..-...++++.++.++..+.+.+.+-..+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34558999999877777888888777665455666655543 333322 2223689999999999988888766433221
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
.+ .+....|++.++|.+--+..
T Consensus 203 ie----~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 203 AE----PQALRLLARAARGSMRDALS 224 (618)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHH
Confidence 11 34567888999997754443
No 124
>PF14516 AAA_35: AAA-like domain
Probab=97.22 E-value=0.018 Score=64.29 Aligned_cols=177 Identities=10% Similarity=0.107 Sum_probs=100.8
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-----cCHHHHHHHHHHHcc----CCCC-------CCCChhH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-----FDVLKITKAILESVT----SSPS-------NLKDLNQ 205 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~----~~~~-------~~~~~~~ 205 (1189)
+.|.|+-.+|||+|...+.+..+..++. ++++++..- .+..++++.+...+. .... .......
T Consensus 34 ~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 34 IRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 4599999999999999888755444454 446765431 245555555554443 3221 0112223
Q ss_pred HHHHHHHHH---ccCceEEEecCCCCCCh------hhHHhhccccCCCC----CCcEEEEEcCCch--hh-hc----cCC
Q 048135 206 VQIQLEKAI---AGQKFLIVLDNVWSKNY------GLWKTLKSPFMAGT----PGSKIIVTTRSVD--VA-LT----LGP 265 (1189)
Q Consensus 206 ~~~~l~~~l---~~~~~LlvlDdv~~~~~------~~~~~l~~~l~~~~----~gs~iivTtr~~~--v~-~~----~~~ 265 (1189)
....+.+.+ .+++.+|++|+|+.--. +.+..++....... ...-.+|...+.+ .. .. ...
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNI 192 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNI 192 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCccc
Confidence 334455543 26899999999954211 12222222111100 1111122222111 11 11 112
Q ss_pred CceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCC
Q 048135 266 IDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCK 327 (1189)
Q Consensus 266 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~ 327 (1189)
...+++++++.+|..+|..++... .. .+..++|...+||+|.-+..++..+...
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 247899999999999999887422 11 1227899999999999999999999664
No 125
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.21 E-value=0.0031 Score=74.08 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=88.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+.|+|..|+|||+||+++.+........ .+++++. .++...+...+... .. ..+++.++. .-+
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~~-~dl 214 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TM----EEFKEKYRS-VDV 214 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cH----HHHHHHHhc-CCE
Confidence 4599999999999999999854322112 2345433 33344444444211 11 223344442 448
Q ss_pred EEecCCCCCCh-h-hHHhhccccCC-CCCCcEEEEEcCCch---------hhhccCCCceEeCCCCChhhHHHHHHHhhc
Q 048135 221 IVLDNVWSKNY-G-LWKTLKSPFMA-GTPGSKIIVTTRSVD---------VALTLGPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 221 lvlDdv~~~~~-~-~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
|||||++.-.. + ..+.+...+.. ...|..||+||.... +...+.....+++++.+.++-.+++.+.+-
T Consensus 215 LiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 215 LLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 99999954211 1 11222221111 113456888776531 122333335799999999999999999875
Q ss_pred cCCCcccchhHHHHHHHHHHHhCCChHHHH
Q 048135 289 ENRDASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
..+. .. -+++..-|++.+.|..-.+.
T Consensus 295 ~~~~-~l---~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 295 EEGI-DL---PDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HcCC-CC---CHHHHHHHHcCcCCCHHHHH
Confidence 3221 11 14567788888888765443
No 126
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.20 E-value=0.0047 Score=72.57 Aligned_cols=155 Identities=10% Similarity=0.062 Sum_probs=86.5
Q ss_pred eEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
.|+|..|+|||.|++++.+...... -..+++++ ..++..++...+.. ...+ .+++.+++ -=+|
T Consensus 318 ~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~-----~~~~----~f~~~y~~-~DLL 381 (617)
T PRK14086 318 FIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRD-----GKGD----SFRRRYRE-MDIL 381 (617)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHh-----ccHH----HHHHHhhc-CCEE
Confidence 3999999999999999998532211 11234543 34444455444321 1112 23333433 3478
Q ss_pred EecCCCCCCh-hhHH-hhccccCC-CCCCcEEEEEcCCc---------hhhhccCCCceEeCCCCChhhHHHHHHHhhcc
Q 048135 222 VLDNVWSKNY-GLWK-TLKSPFMA-GTPGSKIIVTTRSV---------DVALTLGPIDYYNLELLSDDDCWSIFEKHAFE 289 (1189)
Q Consensus 222 vlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 289 (1189)
||||+..... +.|. .+...+.. ...|..|||||+.. .+...+...-+++++..+.+.-.+++.+++..
T Consensus 382 lIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 382 LVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred EEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 8999954321 2222 22222211 12355688888753 22233334468999999999999999988754
Q ss_pred CCCcccchhHHHHHHHHHHHhCCChHHH
Q 048135 290 NRDASAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
..-.. + +++..-|++++.+..-.|
T Consensus 462 r~l~l-~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 462 EQLNA-P---PEVLEFIASRISRNIREL 485 (617)
T ss_pred cCCCC-C---HHHHHHHHHhccCCHHHH
Confidence 32211 1 345566666666554333
No 127
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.0041 Score=73.78 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=62.9
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|++..-.....+.+...+......+++|++|.+. .+...+ +....|+++.++.++..+.+.+.+-..+..
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 566789999996655555666666665444456677666543 222211 222568888999999988888766433221
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
. -.+....|++.++|.+.-+.
T Consensus 198 i----d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 198 Y----EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred c----CHHHHHHHHHHhCCCHHHHH
Confidence 1 13456789999999885443
No 128
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.17 E-value=0.0018 Score=74.79 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=82.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|..|+|||+||+++.+..... -..+++++ ...+...+...+... . ...+++.++ +.-+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~~dv 205 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-NVDA 205 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-cCCE
Confidence 34699999999999999999854322 22244443 334445555554311 1 122334333 3458
Q ss_pred EEecCCCCCChhhH--HhhccccCC-CCCCcEEEEEcCCc---------hhhhccCCCceEeCCCCChhhHHHHHHHhhc
Q 048135 221 IVLDNVWSKNYGLW--KTLKSPFMA-GTPGSKIIVTTRSV---------DVALTLGPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 221 lvlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
+++||+..-....| +.+...+.. ...|-.||+||... .+...+.....+++.+++.++-.+++.+++-
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 88899854321111 222222110 01355788888542 1222233345789999999999999988874
Q ss_pred cCCCcccchhHHHHHHHHHHHhCCC
Q 048135 289 ENRDASAHQNLELIHAKVVEKCKGL 313 (1189)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~c~g~ 313 (1189)
..+-. .+ +++..-|++.+.|.
T Consensus 286 ~~~~~-l~---~evl~~la~~~~~d 306 (445)
T PRK12422 286 ALSIR-IE---ETALDFLIEALSSN 306 (445)
T ss_pred HcCCC-CC---HHHHHHHHHhcCCC
Confidence 43211 11 23444455555543
No 129
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=4.3e-05 Score=91.98 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=57.9
Q ss_pred CCCccEEEEecCCCCCCCc-cccccCCCccceEEEccC-CCccccc-----ccCCCCCcceEEeecccCccccccccCCC
Q 048135 903 LPILGELEIKNCSALKFLP-EGMKHNNVCLECLLIEGC-NSLKFVV-----KGQLLLPLKKLQIRKCEKLKHLLDDRGHI 975 (1189)
Q Consensus 903 l~~L~~L~l~~c~~l~~lp-~~~~~~~~~L~~L~l~~c-~~l~~~~-----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 975 (1189)
.+.|+.|.+.+|..+.... ..+...++.|++|++++| ......+ ....+.+|+.|+++.|..++...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~------ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG------ 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh------
Confidence 6788888888887776633 223336778888888773 2222221 11223566666666665433221
Q ss_pred CCCccchhhhhccccCCCCCcccccccccc--ccCCCCCCCCCccceEeeccCCCC
Q 048135 976 NSTSTSIIKYLYVSYGRSLGENMTWKFEIR--KSMPESPINLECLHQIYIWDCSSF 1029 (1189)
Q Consensus 976 ~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l 1029 (1189)
++.+.- .|++|+.|.+.+|..+ ..+......+++|++|++++|..+
T Consensus 261 -------l~~l~~-~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 261 -------LSALAS-RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred -------HHHHHh-hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 111111 1555555555555432 112222334555566666555544
No 130
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0041 Score=73.15 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=62.3
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
++.-++|+|+|+.-.....+.+...+....+.+++|++|.+ ..+...+ .....+++++++.++..+.+.+.+-..+..
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568999999776667777777776665556777665543 3332221 222578899999988777666554322211
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
.. .+....|++.++|.+-.+.
T Consensus 198 ~~----~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 198 FE----NAALDLLARAANGSVRDAL 218 (509)
T ss_pred CC----HHHHHHHHHHcCCcHHHHH
Confidence 11 2345678899999885443
No 131
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.13 E-value=1e-05 Score=92.10 Aligned_cols=101 Identities=28% Similarity=0.369 Sum_probs=72.7
Q ss_pred CCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCcc
Q 048135 1074 TSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSL 1153 (1189)
Q Consensus 1074 ~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L 1153 (1189)
+.|+.|+++ -|++.... .+..|+.|++|||+. +.+..+|.-. ..-..|+.|.++|| .++++- ++.+|.+|
T Consensus 187 ~ale~LnLs-hNk~~~v~--~Lr~l~~LkhLDlsy-N~L~~vp~l~---~~gc~L~~L~lrnN-~l~tL~--gie~LksL 256 (1096)
T KOG1859|consen 187 PALESLNLS-HNKFTKVD--NLRRLPKLKHLDLSY-NCLRHVPQLS---MVGCKLQLLNLRNN-ALTTLR--GIENLKSL 256 (1096)
T ss_pred HHhhhhccc-hhhhhhhH--HHHhccccccccccc-chhccccccc---hhhhhheeeeeccc-HHHhhh--hHHhhhhh
Confidence 334444444 45566555 478899999999998 4677777532 11134999999988 777774 88999999
Q ss_pred CceeeccCCCCCCCCC---CCCCCCcceeeecCCC
Q 048135 1154 DLLRIRNCPKLTSFPE---VGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1154 ~~L~l~~c~~l~~lp~---~~~~~sL~~L~i~~c~ 1185 (1189)
+.||+++| -|....+ .+.+.+|+.|++.|+|
T Consensus 257 ~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 257 YGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99999984 5555554 4467789999999987
No 132
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.0063 Score=72.13 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=63.4
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-.....+.+...+......+.+|++|.+ ..+...+ .....++++.++.++..+.+.+.+-..+..
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 55669999999765556677777766655456666665544 3332211 112578999999999888777765322211
Q ss_pred ccchhHHHHHHHHHHHhCCChH-HHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQ-AAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 320 (1189)
. -.+....|++.++|.+- |+..+
T Consensus 198 ~----~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 198 F----DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 13445778999999775 44444
No 133
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.11 E-value=0.00082 Score=64.18 Aligned_cols=20 Identities=50% Similarity=0.512 Sum_probs=18.5
Q ss_pred EEccCCCcHHHHHHHHhcCc
Q 048135 144 LVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 144 I~G~gG~GKTtla~~v~~~~ 163 (1189)
|+|..|+||||+|+.++++.
T Consensus 3 l~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHT
T ss_pred EECcCCCCeeHHHHHHHhhc
Confidence 89999999999999999864
No 134
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.09 E-value=0.0074 Score=69.02 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=64.2
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|++..-....++.+...+......+.+|++|.+.+ +...+ .....++..++++++..+.+...+-..+..
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4455889999855444556667666654445667677765543 22211 223578889999999888888766433221
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
.+ .+.+..+++.++|.|..+...
T Consensus 196 i~----~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 196 IE----DEALELIARAADGSLRDALSL 218 (355)
T ss_pred CC----HHHHHHHHHHcCCChHHHHHH
Confidence 11 356778899999988655443
No 135
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.0062 Score=72.73 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=65.7
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc-CCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT-RSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|++..-.....+.+...+.....++.+|++| ..+.+...+ .....++++.++.++..+.+.+.+-..+..
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 445579999996665566777777766555566666554 434433222 223689999999999988888876433221
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
.. .+....|++.++|.+.-+..
T Consensus 211 i~----~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 211 VE----DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHH
Confidence 11 24567889999998865543
No 136
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0058 Score=73.04 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=91.6
Q ss_pred eEEccCCCcHHHHHHHHhcCccccC-cCceEEEE-ecCCcCHHHHHHHHHHHccCC-----CCCCCChhHHHHHHHHH--
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVC-VSEDFDVLKITKAILESVTSS-----PSNLKDLNQVQIQLEKA-- 213 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~-- 213 (1189)
-++|+.|+||||+|+.+.+..-... .+...|.. +....+.-...+.+...-..+ .......+++...+...
T Consensus 42 Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~ 121 (620)
T PRK14954 42 IFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRY 121 (620)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHh
Confidence 3899999999999988776432211 21111111 011111112222221111000 00111233333322221
Q ss_pred --HccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc-CCchhhhc-cCCCceEeCCCCChhhHHHHHHHhhcc
Q 048135 214 --IAGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT-RSVDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFE 289 (1189)
Q Consensus 214 --l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~ 289 (1189)
..+++-++|+|+++.-.....+.+...+......+.+|++| +...+... ......+++..++.++....+.+.+-.
T Consensus 122 ~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 122 GPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred hhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH
Confidence 23455578999996655566777777776654456655544 43444322 223468999999999988777765533
Q ss_pred CCCcccchhHHHHHHHHHHHhCCChH-HHHHH
Q 048135 290 NRDASAHQNLELIHAKVVEKCKGLPQ-AAANL 320 (1189)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 320 (1189)
.+... -.+.+..|++.++|..- |+..+
T Consensus 202 egi~I----~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 202 EGIQI----DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred cCCCC----CHHHHHHHHHHhCCCHHHHHHHH
Confidence 22111 13456789999999554 44433
No 137
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0079 Score=64.03 Aligned_cols=189 Identities=18% Similarity=0.198 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhc---cccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC
Q 048135 102 GMKYKIKSITCRLEEICKQRVD---LGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE 178 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~ 178 (1189)
++..+|++|++-++-=-..-+. +|+. .+.-|-+||++|.|||-||++|++.... -|+.|..
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~----------PPKGVLLYGPPGTGKTLLAkAVA~~T~A------tFIrvvg 218 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGID----------PPKGVLLYGPPGTGKTLLAKAVANQTDA------TFIRVVG 218 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCC----------CCCceEeeCCCCCcHHHHHHHHHhccCc------eEEEecc
Confidence 5677788777665422222222 2221 2344569999999999999999995332 2343432
Q ss_pred CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-ccCceEEEecCCCCC-----------Chh---hHHhhccccCC
Q 048135 179 DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI-AGQKFLIVLDNVWSK-----------NYG---LWKTLKSPFMA 243 (1189)
Q Consensus 179 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~-----------~~~---~~~~l~~~l~~ 243 (1189)
. ++.+..-+.. ..+.+.+-+.- ...+..|.+|.++.- +.+ ..-++...+..
T Consensus 219 S--------ElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 219 S--------ELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred H--------HHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 1 2222222111 11222222222 345788888888541 111 12223333333
Q ss_pred CC--CCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCCh--
Q 048135 244 GT--PGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLP-- 314 (1189)
Q Consensus 244 ~~--~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P-- 314 (1189)
+. ..-|||..|...++.... ..+..+++..-+.+.-.++|.-++-+ ......-+++ .+++.|.|.-
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd~e----~la~~~~g~sGA 359 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVDLE----LLARLTEGFSGA 359 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcCHH----HHHHhcCCCchH
Confidence 32 356899988877765432 23467888866666667788888743 2223333454 4555555543
Q ss_pred --HHHHHHHhhhc
Q 048135 315 --QAAANLGGLLC 325 (1189)
Q Consensus 315 --lai~~~g~~L~ 325 (1189)
-|+.+=|++++
T Consensus 360 dlkaictEAGm~A 372 (406)
T COG1222 360 DLKAICTEAGMFA 372 (406)
T ss_pred HHHHHHHHHhHHH
Confidence 44555555553
No 138
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00045 Score=83.66 Aligned_cols=108 Identities=27% Similarity=0.251 Sum_probs=78.9
Q ss_pred CCCCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccc--cccc
Q 048135 489 PEVECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSL--PEST 566 (1189)
Q Consensus 489 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~L--P~~i 566 (1189)
.-++.||+|.+.+... ..+-+...+.+|++|+.||+|+++++.+ ..+++|++|+.|.+++-.+..- -..+
T Consensus 145 ~~LPsL~sL~i~~~~~-------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQF-------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred hhCcccceEEecCcee-------cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 3467888887654321 2222556778999999999999999988 7899999999999998766642 2357
Q ss_pred cCCCCCcEEeccCccccccCchh-------hhccccCCcccccCCc
Q 048135 567 CSLINLQTLLLRRCFYLMKWPSK-------VMNLINLRHLDITDVH 605 (1189)
Q Consensus 567 ~~L~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~ 605 (1189)
.+|++|++||+|..... ..|.- -..|++||.||.+++.
T Consensus 217 F~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcc
Confidence 88999999999986432 22221 1348889999888764
No 139
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0049 Score=68.65 Aligned_cols=159 Identities=17% Similarity=0.192 Sum_probs=87.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
++-|||..|.|||.|++++.+.......+. ..+.+ +........+..+.. .-....++.. .-=+
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a-~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~y--~~dl 178 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNA-RVVYL----TSEDFTNDFVKALRD---------NEMEKFKEKY--SLDL 178 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCc-eEEec----cHHHHHHHHHHHHHh---------hhHHHHHHhh--ccCe
Confidence 345999999999999999998533332332 22222 334444444444431 1223445554 3348
Q ss_pred EEecCCCCC--C---hhhHHhhccccCCCCCCcEEEEEcCCc---------hhhhccCCCceEeCCCCChhhHHHHHHHh
Q 048135 221 IVLDNVWSK--N---YGLWKTLKSPFMAGTPGSKIIVTTRSV---------DVALTLGPIDYYNLELLSDDDCWSIFEKH 286 (1189)
Q Consensus 221 lvlDdv~~~--~---~~~~~~l~~~l~~~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 286 (1189)
+++||++.- . ++..-.+...+.. .|-.||+|++.. ++...+...-++++.+.+.+...+++.++
T Consensus 179 llIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 179 LLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred eeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 889999651 1 1111122222333 244899998643 22233344468999999999999999987
Q ss_pred hccCCCcccchhHHHHHHHHHHHhCCChHHH
Q 048135 287 AFENRDASAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
+...+-..+.+...-++..+-+-..-+.-|+
T Consensus 257 a~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 7544333332333334444333333334444
No 140
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.014 Score=64.58 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=65.2
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-+.+..+.+...+..-..++.+|+||.+.+ +...+ +-...+.+.+++.+++.+.+.... +..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 3344557799987777788888877766556777777777653 33222 223679999999999998887653 111
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
. .+.+..++..++|.|..+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 223457789999999765544
No 141
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.0045 Score=74.77 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=91.6
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCC-----CCCCCChhHHHHHHHHHH---
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSS-----PSNLKDLNQVQIQLEKAI--- 214 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~l--- 214 (1189)
-++|..|+||||+|+.+.+.......+. .....+.....+.+......+ .......+++.. +.+.+
T Consensus 42 Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~-----~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~ 115 (585)
T PRK14950 42 LFTGPRGVGKTSTARILAKAVNCTTNDP-----KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDARE-IIERVQFR 115 (585)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhC
Confidence 3899999999999998876422110000 001112222333333222111 001122233222 22222
Q ss_pred --ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccC
Q 048135 215 --AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFEN 290 (1189)
Q Consensus 215 --~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~ 290 (1189)
.+++-++|+|++..-..+..+.+...+......+.+|++|.+ ..+.... .....++++.++.++..+.+.+.+...
T Consensus 116 p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~e 195 (585)
T PRK14950 116 PALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAE 195 (585)
T ss_pred cccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 245668999999655555667776666554456666666543 3332221 223578899999999888888776433
Q ss_pred CCcccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 291 RDASAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
+.... .+.+..|++.++|.+..+..
T Consensus 196 gl~i~----~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 196 GINLE----PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred CCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22111 34577899999998865543
No 142
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=7.1e-05 Score=90.13 Aligned_cols=113 Identities=18% Similarity=0.168 Sum_probs=75.2
Q ss_pred CCCCCcEEEeccCCCcccc---cccCCCCCccEEEEec-CCCCCCCc---cccccCCCccceEEEccCCCccccccc---
Q 048135 879 GLTSPKKLCIENCQRLVSF---QEVCFLPILGELEIKN-CSALKFLP---EGMKHNNVCLECLLIEGCNSLKFVVKG--- 948 (1189)
Q Consensus 879 ~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~-c~~l~~lp---~~~~~~~~~L~~L~l~~c~~l~~~~~~--- 948 (1189)
.++.|+.|.+.+|..+... +.....+.|+.|++++ |......+ ......+.+|+.|+++.|..++.....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4788999999999887762 3345588999999988 33333333 224446688999999988865543322
Q ss_pred CCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCcccccccccc
Q 048135 949 QLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIR 1005 (1189)
Q Consensus 949 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~ 1005 (1189)
..+++|+.|.+.+|..++... +.. -...|++|++|+++.|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~g-------------l~~-i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEG-------------LVS-IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhH-------------HHH-HHHhcCcccEEeeecCccc
Confidence 236689999988887643221 111 1235788888888887765
No 143
>PRK08116 hypothetical protein; Validated
Probab=96.95 E-value=0.0017 Score=69.67 Aligned_cols=101 Identities=25% Similarity=0.265 Sum_probs=57.3
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+.++|..|+|||+||.++++....+ -..+++++ ..+++..+........ ..+.. .+.+.+.+-. ||
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d-lL 182 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD-LL 182 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC-EE
Confidence 4599999999999999999864322 22345554 3445555554433211 11111 2334444434 89
Q ss_pred EecCCCCCChhhHHh--hccccCC-CCCCcEEEEEcCC
Q 048135 222 VLDNVWSKNYGLWKT--LKSPFMA-GTPGSKIIVTTRS 256 (1189)
Q Consensus 222 vlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 256 (1189)
||||+..+....|.. +...+.. ...|..+||||..
T Consensus 183 viDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 183 ILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 999995544445543 2222221 1345679999874
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.92 E-value=0.0099 Score=67.56 Aligned_cols=130 Identities=21% Similarity=0.178 Sum_probs=70.8
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
++.+.++|++|.|||++|+++++..... | +.+.. ..+ .....+ .....+...+.......+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~-f-----i~i~~----s~l----~~k~~g-----e~~~~lr~lf~~A~~~~P 239 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTAT-F-----IRVVG----SEF----VQKYLG-----EGPRMVRDVFRLARENAP 239 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCC-E-----EEEeh----HHH----HHHhcc-----hhHHHHHHHHHHHHhcCC
Confidence 3456799999999999999999853221 2 22211 111 111110 011112222233334678
Q ss_pred eEEEecCCCCC-----------Chh---hHHhhccccCC--CCCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChh
Q 048135 219 FLIVLDNVWSK-----------NYG---LWKTLKSPFMA--GTPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDD 277 (1189)
Q Consensus 219 ~LlvlDdv~~~-----------~~~---~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~ 277 (1189)
.+|++|+++.- +.. .+..+...+.. ...+..||+||...+..... ..+..+++...+.+
T Consensus 240 ~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~ 319 (398)
T PTZ00454 240 SIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 319 (398)
T ss_pred eEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHH
Confidence 89999997531 000 11222222221 12456788888765543221 23356889988999
Q ss_pred hHHHHHHHhh
Q 048135 278 DCWSIFEKHA 287 (1189)
Q Consensus 278 ~~~~lf~~~a 287 (1189)
+..++|..+.
T Consensus 320 ~R~~Il~~~~ 329 (398)
T PTZ00454 320 QKRLIFQTIT 329 (398)
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 145
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.92 E-value=0.00067 Score=82.25 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=45.9
Q ss_pred CcceEEEeccCCC-c-ccCccc-cCcccccEEeccccccc--cccccccCCCCCcEEeccCccccccCchhhhccccCCc
Q 048135 524 KKLRVLSLKSYHI-I-ELPNSI-GRLMHLRYLDMSNTAIS--SLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRH 598 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~-~-~lp~~i-~~l~~L~~L~L~~~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 598 (1189)
++|+.||+++... . .-|..+ ..|+.||.|.+++-.+. ++-.-..+++||..||++++ +++.+ .+|++|+||+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 4677777776442 1 113333 34667777777764432 22233445677777777775 56666 66777777777
Q ss_pred ccccC
Q 048135 599 LDITD 603 (1189)
Q Consensus 599 L~l~~ 603 (1189)
|.+.+
T Consensus 200 L~mrn 204 (699)
T KOG3665|consen 200 LSMRN 204 (699)
T ss_pred HhccC
Confidence 76654
No 146
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.91 E-value=0.0038 Score=60.48 Aligned_cols=86 Identities=16% Similarity=0.023 Sum_probs=45.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc-e
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK-F 219 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~ 219 (1189)
.+.|+|.+|+||||+|+.+....... ...++++..+........... ...................+.+..+..+ .
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35699999999999999998743322 123555544433322222111 1111111111222222334444444444 8
Q ss_pred EEEecCCCCC
Q 048135 220 LIVLDNVWSK 229 (1189)
Q Consensus 220 LlvlDdv~~~ 229 (1189)
++++|+++.-
T Consensus 81 viiiDei~~~ 90 (148)
T smart00382 81 VLILDEITSL 90 (148)
T ss_pred EEEEECCccc
Confidence 9999999664
No 147
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.017 Score=67.42 Aligned_cols=100 Identities=9% Similarity=0.072 Sum_probs=66.4
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|++..-..+..+.+...+....+.+++|++|.+. .+.... .....+++.+++.++..+.+.+.+-..+..
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 455689999997766677777777776655567777776553 222111 223689999999999888877665433221
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
. -.+.+..|++.++|.+--+..
T Consensus 196 i----~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 196 Y----EPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred C----CHHHHHHHHHHcCCcHHHHHH
Confidence 1 134567899999998854443
No 148
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.90 E-value=0.0035 Score=65.15 Aligned_cols=157 Identities=16% Similarity=0.182 Sum_probs=92.1
Q ss_pred eEEccCCCcHHHHHHHHhcCccccC-cCceE-EEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH--ccCc
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEG-FNPKA-WVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI--AGQK 218 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~ 218 (1189)
..+|++|.|||+.|.+.....--.+ |.+++ =.++|...... +.++ ...+...+.....+.. ..++
T Consensus 61 LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~----------Kik~fakl~~~~~~~~~~~~~~ 129 (346)
T KOG0989|consen 61 LFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE----------KIKNFAKLTVLLKRSDGYPCPP 129 (346)
T ss_pred EeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh----------hhcCHHHHhhccccccCCCCCc
Confidence 3799999999999987776433344 65443 23444332221 0000 0111111111110000 0123
Q ss_pred -eEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCccc
Q 048135 219 -FLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDASA 295 (1189)
Q Consensus 219 -~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~ 295 (1189)
=.+|||+++....+.|..++..+......+|.|..+.+-. +...+ .--..|.-++|.+++..+-+...|-..+...+
T Consensus 130 fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d 209 (346)
T KOG0989|consen 130 FKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID 209 (346)
T ss_pred ceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC
Confidence 3688999988888999999988877666677665544322 21111 11257889999999999988888765443332
Q ss_pred chhHHHHHHHHHHHhCCCh
Q 048135 296 HQNLELIHAKVVEKCKGLP 314 (1189)
Q Consensus 296 ~~~~~~~~~~i~~~c~g~P 314 (1189)
.+..+.|++.++|--
T Consensus 210 ----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 210 ----DDALKLIAKISDGDL 224 (346)
T ss_pred ----HHHHHHHHHHcCCcH
Confidence 345578899998854
No 149
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.90 E-value=0.015 Score=70.05 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=65.0
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEE-EEcCCchhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKII-VTTRSVDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|++..-....+..+...+......+.+| +||+...+... ......+++.+++.++..+.+...+-..+..
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 566689999997666667888877666544455555 45444444332 2233689999999999988887765332211
Q ss_pred ccchhHHHHHHHHHHHhCCChH-HHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQ-AAANLG 321 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Pl-ai~~~g 321 (1189)
. -.+.+..|++.++|.+- |+..+-
T Consensus 197 i----d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 197 Y----EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 13456789999999764 444433
No 150
>PRK08118 topology modulation protein; Reviewed
Probab=96.84 E-value=0.00045 Score=68.44 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=26.3
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC--cCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG--FNPKAW 173 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~--f~~~~w 173 (1189)
+.|+|++|+||||+|+.+++...... ||..+|
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 46999999999999999998765543 777776
No 151
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.83 E-value=0.00017 Score=82.53 Aligned_cols=79 Identities=27% Similarity=0.340 Sum_probs=37.1
Q ss_pred CCCcceEEEeccCCCcccCccccCcccccEEecccccccccccc-ccCCCCCcEEeccCccccccCchhhhccccCCccc
Q 048135 522 KFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPES-TCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLD 600 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 600 (1189)
-++.|+.|+|++|.+...- .+..+.+|++|||++|.+..+|.- .... +|+.|++++| .++.+ .+|.+|.+|++||
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhccc
Confidence 3444555555555554442 444555555555555555544432 1111 2555555554 34444 2345555555555
Q ss_pred ccCC
Q 048135 601 ITDV 604 (1189)
Q Consensus 601 l~~~ 604 (1189)
+++|
T Consensus 261 lsyN 264 (1096)
T KOG1859|consen 261 LSYN 264 (1096)
T ss_pred hhHh
Confidence 5544
No 152
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.83 E-value=0.0021 Score=72.21 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=55.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCC-ChhHHHHHHHHHHc--
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLK-DLNQVQIQLEKAIA-- 215 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~-- 215 (1189)
+.+.++|++|+|||++|+++++...... |+.+.||++++.++..++...+.- ...... ......+.+++.-+
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP----~~vgy~~~~G~f~~~~~~A~~~p 270 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP----NGVGFRRKDGIFYNFCQQAKEQP 270 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC----CCCCeEecCchHHHHHHHHHhcc
Confidence 3456999999999999999987654444 788889999988887766543211 110100 01112222333222
Q ss_pred cCceEEEecCCCCCCh
Q 048135 216 GQKFLIVLDNVWSKNY 231 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~ 231 (1189)
++++++|+|++...+.
T Consensus 271 ~~~~vliIDEINRani 286 (459)
T PRK11331 271 EKKYVFIIDEINRANL 286 (459)
T ss_pred cCCcEEEEehhhccCH
Confidence 4689999999966543
No 153
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.02 Score=68.00 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=68.1
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc-CCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT-RSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|++..-.....+.+...+........+|++| ....+...+ .-...|+...++.++..+.+.+.+-..+..
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 455689999997766677888877776655566656544 444443322 223689999999999888887765433221
Q ss_pred ccchhHHHHHHHHHHHhCCChH-HHHHHHhhh
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQ-AAANLGGLL 324 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Pl-ai~~~g~~L 324 (1189)
.. .+....|++.++|.+- |+..+-..+
T Consensus 197 i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 197 VD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 3355778999999774 555554444
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.79 E-value=0.0075 Score=68.96 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhc---cccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC
Q 048135 102 GMKYKIKSITCRLEEICKQRVD---LGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE 178 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~ 178 (1189)
+++..++++++.++-....... +++ ..++.+.++|.+|.|||++|+++++..... | +.+..
T Consensus 187 Gl~~qi~~l~e~v~lpl~~p~~~~~~gi----------~~p~gVLL~GPPGTGKT~LAraIA~el~~~-f-----i~V~~ 250 (438)
T PTZ00361 187 GLEQQIQEIKEAVELPLTHPELYDDIGI----------KPPKGVILYGPPGTGKTLLAKAVANETSAT-F-----LRVVG 250 (438)
T ss_pred CHHHHHHHHHHHHHhhhhCHHHHHhcCC----------CCCcEEEEECCCCCCHHHHHHHHHHhhCCC-E-----EEEec
Confidence 5666777776666533222221 222 122345699999999999999999853221 3 22211
Q ss_pred CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEEecCCCCCC-----------hh---hHHhhccccCC-
Q 048135 179 DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIVLDNVWSKN-----------YG---LWKTLKSPFMA- 243 (1189)
Q Consensus 179 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------~~---~~~~l~~~l~~- 243 (1189)
. .+ .....+ .....+...+.....+.+.+|+||+++.-. .+ ....+...+..
T Consensus 251 s----eL----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 251 S----EL----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred c----hh----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 1 11 111110 011112222222334567899999974210 00 01112212211
Q ss_pred -CCCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHHHHHHhhc
Q 048135 244 -GTPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 244 -~~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
...+.+||+||...+..... .....+++...+.++..++|..++.
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 12356788888765544321 1235789999999999999998764
No 155
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.017 Score=71.54 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=65.0
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcC-Cchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTR-SVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|||+++.-..+.++.|...+..-...+.+|++|. ...+...+ .....|++..++.++..+.+.+.+-..+.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 35555889999977777788888887776555666665554 33443322 23368999999999988877775422221
Q ss_pred cccchhHHHHHHHHHHHhCCChHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
.. -.+....|++.++|.+..+
T Consensus 198 ~i----d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 198 PV----EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CC----CHHHHHHHHHHcCCCHHHH
Confidence 11 1234567899999988433
No 156
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.019 Score=65.79 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=59.9
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc-CCchhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT-RSVDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|++..-....++.+...+......+.+|++| +...+... ......++.+++++++....+...+...+..
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 345589999996544455677665554433445555555 33333222 1223578999999999988888876543321
Q ss_pred ccchhHHHHHHHHHHHhCCChHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQA 316 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Pla 316 (1189)
.. .+....+++.++|.+-.
T Consensus 187 i~----~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 187 FE----DDALHIIAQKADGALRD 205 (367)
T ss_pred CC----HHHHHHHHHhCCCCHHH
Confidence 11 34667888899986653
No 157
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.026 Score=66.00 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=62.3
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc-CCchhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT-RSVDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|+|+++.-.....+.+...+....+...+|++| +...+... ......+++.+++.++..+.+.+.+-..+.
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3556699999996655556667766665544455555554 43333322 122357899999999988887776543222
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
.. -.+.+..|++.++|.+-.+..
T Consensus 197 ~i----d~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 197 EY----EEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHH
Confidence 11 124467788899997754443
No 158
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.01 Score=71.40 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=91.6
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCC-----CCCCCChhHHHHHHHHH----
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSS-----PSNLKDLNQVQIQLEKA---- 213 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~---- 213 (1189)
-++|..|+||||+|+.+.+..-....+.. .....+.-...+.+......+ .......+++.+.+...
T Consensus 42 Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~----~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p 117 (620)
T PRK14948 42 LFTGPRGTGKTSSARILAKSLNCLNSDKP----TPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP 117 (620)
T ss_pred EEECCCCCChHHHHHHHHHHhcCCCcCCC----CCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh
Confidence 48999999999999998764322111100 001112222333332221111 00112223332222111
Q ss_pred HccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCC
Q 048135 214 IAGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENR 291 (1189)
Q Consensus 214 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 291 (1189)
..+++-++|+|+++.-..+.++.+...+........+|++|.+. .+...+ .....+++..++.++..+.+.+.+-..+
T Consensus 118 ~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 118 VQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred hcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC
Confidence 12455688999997655567777877766544455555555433 332221 2235788889999888887777654322
Q ss_pred CcccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 292 DASAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 292 ~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
.... .+.+..|++.++|.+..+..+
T Consensus 198 i~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 198 IEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 1111 245678999999988655433
No 159
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.68 E-value=0.06 Score=55.05 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=101.0
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEec-CCcCHHHHHHHHHHHccCCCCCCCChhHHH----HHHHHH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVS-EDFDVLKITKAILESVTSSPSNLKDLNQVQ----IQLEKA 213 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~~l~~~ 213 (1189)
++.++|+|.-|.|||.+++++..... =+.++=|.+. ...+...+...+...+..+. ........ +.+...
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLN---EDQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcC---CCceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHHHH
Confidence 34567999999999999995443111 1222224443 34577788888888887632 23333233 333333
Q ss_pred H-ccCc-eEEEecCCCCCChhhHHhhccccCCCCCCc---EEEEEcCCchhh--------hccC-CCce-EeCCCCChhh
Q 048135 214 I-AGQK-FLIVLDNVWSKNYGLWKTLKSPFMAGTPGS---KIIVTTRSVDVA--------LTLG-PIDY-YNLELLSDDD 278 (1189)
Q Consensus 214 l-~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtr~~~v~--------~~~~-~~~~-~~l~~L~~~~ 278 (1189)
. +++| +.+++||..+......+.++........++ +|+..-. +.+. ...+ -..+ |++.|++.++
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 3 5677 899999997766666665543322111122 1222111 1111 1111 1134 9999999998
Q ss_pred HHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHH
Q 048135 279 CWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLG 321 (1189)
Q Consensus 279 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g 321 (1189)
....+.++.-+...+.+- --.+....|.....|.|.+|..++
T Consensus 205 t~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHH
Confidence 888877775443222111 123456788999999999987655
No 160
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.66 E-value=0.0021 Score=65.63 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=19.0
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCcccc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVE 166 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~ 166 (1189)
.+.+.|+|.+|+|||++.++++......
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3556799999999999999988754443
No 161
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.031 Score=64.98 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=63.1
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-..+..+.+...+.....+..+|++|.+ ..+... ......++++.+++++..+.+.+.+-..+..
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999999654445566666666554446666666543 333222 1223579999999999888777765332211
Q ss_pred ccchhHHHHHHHHHHHhCCChH-HHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQ-AAANLG 321 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Pl-ai~~~g 321 (1189)
. -.+.+..|++.++|.+- |+..+-
T Consensus 200 i----~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 200 T----SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 13456789999999764 444433
No 162
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.63 E-value=0.023 Score=66.15 Aligned_cols=131 Identities=19% Similarity=0.219 Sum_probs=69.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-++|++|.|||.+|+++.+..... | +-+..+ .+ .....+ .+...+...++..-...++
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~-~---~~l~~~------~l----~~~~vG-----ese~~l~~~f~~A~~~~P~ 320 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLP-L---LRLDVG------KL----FGGIVG-----ESESRMRQMIRIAEALSPC 320 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCC-E---EEEEhH------Hh----cccccC-----hHHHHHHHHHHHHHhcCCc
Confidence 446699999999999999998853322 1 112111 11 111000 0111222222222235789
Q ss_pred EEEecCCCCCC--------hh----hHHhhccccCCCCCCcEEEEEcCCchhhh-----ccCCCceEeCCCCChhhHHHH
Q 048135 220 LIVLDNVWSKN--------YG----LWKTLKSPFMAGTPGSKIIVTTRSVDVAL-----TLGPIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 220 LlvlDdv~~~~--------~~----~~~~l~~~l~~~~~gs~iivTtr~~~v~~-----~~~~~~~~~l~~L~~~~~~~l 282 (1189)
+|++|+++.-. .. ....+...+.....+--||.||.+.+... .-..+..+.++..+.++-.++
T Consensus 321 IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~I 400 (489)
T CHL00195 321 ILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKI 400 (489)
T ss_pred EEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHH
Confidence 99999995310 00 01112222222233445666776554221 112346788998899999999
Q ss_pred HHHhhcc
Q 048135 283 FEKHAFE 289 (1189)
Q Consensus 283 f~~~a~~ 289 (1189)
|..+..+
T Consensus 401 l~~~l~~ 407 (489)
T CHL00195 401 FKIHLQK 407 (489)
T ss_pred HHHHHhh
Confidence 9888643
No 163
>PRK07261 topology modulation protein; Provisional
Probab=96.62 E-value=0.005 Score=61.41 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=38.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC--cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG--FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.|+|++|+||||+|+++........ .|...|-..- ...+.++....+.+.+.+.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~- 60 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD- 60 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC-
Confidence 46999999999999999876533322 4555552110 11223445555566666655
Q ss_pred EEEecCCC
Q 048135 220 LIVLDNVW 227 (1189)
Q Consensus 220 LlvlDdv~ 227 (1189)
.|+|+..
T Consensus 61 -wIidg~~ 67 (171)
T PRK07261 61 -WIIDGNY 67 (171)
T ss_pred -EEEcCcc
Confidence 5777773
No 164
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.62 E-value=0.061 Score=57.96 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=26.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKI 185 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 185 (1189)
.+-+.|.+|+|||++|+++.... . . ..++++.....+..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l--g-~-~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR--D-R-PVMLINGDAELTTSDL 63 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh--C-C-CEEEEeCCccCCHHHH
Confidence 34589999999999999998621 1 1 2344555554444433
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.62 E-value=0.046 Score=56.19 Aligned_cols=95 Identities=26% Similarity=0.368 Sum_probs=54.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+-+||..|.|||++++++.+....++. --|.|.+ .+..++..+...++. +..||+|
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~~~GL---RlIev~k-------------------~~L~~l~~l~~~l~~--~~~kFIl 110 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYADQGL---RLIEVSK-------------------EDLGDLPELLDLLRD--RPYKFIL 110 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHhhcCc---eEEEECH-------------------HHhccHHHHHHHHhc--CCCCEEE
Confidence 458999999999999999874332221 1122221 122344444444443 4579999
Q ss_pred EecCCCCC-ChhhHHhhccccCCC---CC-CcEEEEEcCCchhh
Q 048135 222 VLDNVWSK-NYGLWKTLKSPFMAG---TP-GSKIIVTTRSVDVA 260 (1189)
Q Consensus 222 vlDdv~~~-~~~~~~~l~~~l~~~---~~-gs~iivTtr~~~v~ 260 (1189)
.+||+.-+ .......++..+..+ .| ...|.+||..++..
T Consensus 111 f~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 111 FCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred EecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 99998433 234456666555432 22 33344566555544
No 166
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00057 Score=69.99 Aligned_cols=81 Identities=26% Similarity=0.344 Sum_probs=56.7
Q ss_pred cCCCcceEEEeccCCCcc---cCccccCcccccEEeccccccc----cccccccCCCCCcEEeccCccccc--cCchhhh
Q 048135 521 PKFKKLRVLSLKSYHIIE---LPNSIGRLMHLRYLDMSNTAIS----SLPESTCSLINLQTLLLRRCFYLM--KWPSKVM 591 (1189)
Q Consensus 521 ~~l~~Lr~L~L~~~~~~~---lp~~i~~l~~L~~L~L~~~~i~----~LP~~i~~L~~L~~L~L~~~~~l~--~lp~~i~ 591 (1189)
...+.++.|||.+|.|+. +-.-+.+|++|++|+|+.|.+. .+| -.+.||++|-|.++ .+. ..-+.+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT-~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT-GLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC-CCChhhhhhhhh
Confidence 456788899999988764 3333468889999999988544 444 35678889888875 332 2334467
Q ss_pred ccccCCcccccCCc
Q 048135 592 NLINLRHLDITDVH 605 (1189)
Q Consensus 592 ~L~~L~~L~l~~~~ 605 (1189)
.+++++.|+++.|.
T Consensus 144 ~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 144 DLPKVTELHMSDNS 157 (418)
T ss_pred cchhhhhhhhccch
Confidence 77888888887774
No 167
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.56 E-value=0.013 Score=65.52 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=62.5
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEE
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIV 222 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Llv 222 (1189)
-++|.+|+||||+|+++++... .+ ...++.+. .... ..++.+.... .. ..+.+.+-++|
T Consensus 47 ll~G~~G~GKT~la~~l~~~~~---~~-~~~i~~~~-~~~~-~i~~~l~~~~-------------~~--~~~~~~~~vli 105 (316)
T PHA02544 47 LHSPSPGTGKTTVAKALCNEVG---AE-VLFVNGSD-CRID-FVRNRLTRFA-------------ST--VSLTGGGKVII 105 (316)
T ss_pred EeeCcCCCCHHHHHHHHHHHhC---cc-ceEeccCc-ccHH-HHHHHHHHHH-------------Hh--hcccCCCeEEE
Confidence 3589999999999999987421 11 22333333 1111 1111111100 00 00123455789
Q ss_pred ecCCCCC-ChhhHHhhccccCCCCCCcEEEEEcCCchhh-hcc-CCCceEeCCCCChhhHHHHHHH
Q 048135 223 LDNVWSK-NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVA-LTL-GPIDYYNLELLSDDDCWSIFEK 285 (1189)
Q Consensus 223 lDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~-~~~~~~~l~~L~~~~~~~lf~~ 285 (1189)
+||++.. ..+..+.+...+.....++++|+||...... ... .....+.++..+.++..+++..
T Consensus 106 iDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 106 IDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 9999644 2223334444344444677899888754311 111 1124567767777777665543
No 168
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.50 E-value=0.00036 Score=70.40 Aligned_cols=194 Identities=22% Similarity=0.238 Sum_probs=112.5
Q ss_pred cCCCcceEEEeccCCCc-----ccCccccCcccccEEeccccc---c-cccc-------ccccCCCCCcEEeccCccccc
Q 048135 521 PKFKKLRVLSLKSYHII-----ELPNSIGRLMHLRYLDMSNTA---I-SSLP-------ESTCSLINLQTLLLRRCFYLM 584 (1189)
Q Consensus 521 ~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~---i-~~LP-------~~i~~L~~L~~L~L~~~~~l~ 584 (1189)
..+..+..+|||+|.|. .+...|.+-.+|+.-+++.-. . .++| +.+-++++|++.+|+.|-.-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34678899999999875 355667777889999888631 1 1333 345678999999999986555
Q ss_pred cCchh----hhccccCCcccccCCcccccCCCC-CCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeee
Q 048135 585 KWPSK----VMNLINLRHLDITDVHLIKEMPLG-MEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLEC 659 (1189)
Q Consensus 585 ~lp~~----i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 659 (1189)
+.|+. |++-++|.||.+++|. +..+..+ |+ +.|++|.. .....+.+.|+.....-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig--kal~~la~-----------------nKKaa~kp~Le~vicgr 166 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG--KALFHLAY-----------------NKKAADKPKLEVVICGR 166 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCccchhHHH--HHHHHHHH-----------------HhhhccCCCceEEEecc
Confidence 55544 5677899999999886 3332211 22 12222210 01123344555544332
Q ss_pred cCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCCC------CCCCCCCceeEEEecCCCCCCC----CC-CCCcccCc
Q 048135 660 RYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPSW------VGDPSFSNIVMITLESCTNCRS----LP-SLGLLCSL 728 (1189)
Q Consensus 660 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~------~~~~~~~~L~~L~l~~~~~~~~----lp-~l~~l~~L 728 (1189)
+.-.+.........+..+.+|+.+.+..|.+. |.. .+-..+.+|+.|++.+|..... +. .+...+.|
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 22223333333344556678888888776653 221 1112457788888887754211 11 23344567
Q ss_pred ceEeeccc
Q 048135 729 KALTIREM 736 (1189)
Q Consensus 729 ~~L~L~~~ 736 (1189)
+.|.+.+|
T Consensus 245 rEL~lnDC 252 (388)
T COG5238 245 RELRLNDC 252 (388)
T ss_pred hhccccch
Confidence 77777776
No 169
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.48 E-value=0.0037 Score=64.65 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=25.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEe
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCV 176 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~ 176 (1189)
+.|+|..|+||||++..+.... ...|+++++++-
T Consensus 16 ~viIG~sGSGKT~li~~lL~~~-~~~f~~I~l~t~ 49 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIKSLLYYL-RHKFDHIFLITP 49 (241)
T ss_pred EEEECCCCCCHHHHHHHHHHhh-cccCCEEEEEec
Confidence 4599999999999999988642 223877776644
No 170
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.046 Score=54.75 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcC
Q 048135 102 GMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFD 181 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~ 181 (1189)
+++++|++|++-++--.+.-+-|.-- .-..+.-+-++|++|.|||-||++|++. ..+-|+.||..
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aL-------GIaQPKGvlLygppgtGktLlaraVahh------t~c~firvsgs-- 215 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEAL-------GIAQPKGVLLYGPPGTGKTLLARAVAHH------TDCTFIRVSGS-- 215 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhc-------CCCCCcceEEecCCCCchhHHHHHHHhh------cceEEEEechH--
Confidence 56778888877665322221111100 0123344569999999999999999984 23445666533
Q ss_pred HHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH----ccCceEEEecCCCCC-----------ChhhH---HhhccccCC
Q 048135 182 VLKITKAILESVTSSPSNLKDLNQVQIQLEKAI----AGQKFLIVLDNVWSK-----------NYGLW---KTLKSPFMA 243 (1189)
Q Consensus 182 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~-----------~~~~~---~~l~~~l~~ 243 (1189)
+ +.+...+ +..+.+++.+ ..-+..|.+|.+++- +.+.. -++...+..
T Consensus 216 --e----lvqk~ig---------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 216 --E----LVQKYIG---------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred --H----HHHHHhh---------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 1 1111111 1122222222 234667888887541 11111 122223332
Q ss_pred C--CCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHHHHHHhh
Q 048135 244 G--TPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 244 ~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
+ .+.-+||..|..-++.... ..+..++..+-+++.-.++++-+.
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 2 3567888888766665432 233567777777777677776654
No 171
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.46 E-value=0.044 Score=59.05 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=83.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCC-------CChhHHHHHHHH--
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNL-------KDLNQVQIQLEK-- 212 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~l~~-- 212 (1189)
+-|+|-.|.|||.+.+++++.... ..+|+++-+.|...-+...|+.+....+.+. .+..+....+++
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n~----~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~ 108 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLNL----ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWP 108 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcCC----cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhH
Confidence 358999999999999999986432 3689999999999999999999985222211 112223333333
Q ss_pred HHc--cCceEEEecCCCCCChhhHHh--------hccccCCCCCCcEEEEEcCCchhhhc---cCCC--ceEeCCCCChh
Q 048135 213 AIA--GQKFLIVLDNVWSKNYGLWKT--------LKSPFMAGTPGSKIIVTTRSVDVALT---LGPI--DYYNLELLSDD 277 (1189)
Q Consensus 213 ~l~--~~~~LlvlDdv~~~~~~~~~~--------l~~~l~~~~~gs~iivTtr~~~v~~~---~~~~--~~~~l~~L~~~ 277 (1189)
... ++.++||||+++.- .+.+. +...++. +. -+|+++-....... +++. .++....-+.+
T Consensus 109 ~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~--~~-i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~ 183 (438)
T KOG2543|consen 109 AATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNE--PT-IVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVE 183 (438)
T ss_pred HhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCC--Cc-eEEEEeccccHHHhhcccCCCCceEEecCCCCHH
Confidence 122 46899999999431 11111 1111221 22 33444433222222 2333 35667788899
Q ss_pred hHHHHHHHh
Q 048135 278 DCWSIFEKH 286 (1189)
Q Consensus 278 ~~~~lf~~~ 286 (1189)
|-.+++.+.
T Consensus 184 e~~~Il~~~ 192 (438)
T KOG2543|consen 184 ETQVILSRD 192 (438)
T ss_pred HHHHHHhcC
Confidence 998888764
No 172
>PTZ00202 tuzin; Provisional
Probab=96.45 E-value=0.018 Score=63.71 Aligned_cols=137 Identities=12% Similarity=0.186 Sum_probs=77.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-----
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI----- 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----- 214 (1189)
+++.|.|++|+||||+++.+..... ..+++.-.. +..++++.++.+++.+.. ....++...|.+.+
T Consensus 287 rivvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr--g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~ 357 (550)
T PTZ00202 287 RIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR--GTEDTLRSVVKALGVPNV--EACGDLLDFISEACRRAKK 357 (550)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC--CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999886432 122222222 779999999999997432 22233444443333
Q ss_pred c-cCceEEEecCCCCCC-hhhHHhhccccCCCCCCcEEEEEcCCchhhhcc---CCCceEeCCCCChhhHHHHHHHh
Q 048135 215 A-GQKFLIVLDNVWSKN-YGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL---GPIDYYNLELLSDDDCWSIFEKH 286 (1189)
Q Consensus 215 ~-~~~~LlvlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 286 (1189)
. +++.+||+-==.-.+ ...+.+.. .+...-.-|.|++----+.+.... .--..|-+..++.++|.+.-.+.
T Consensus 358 e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 358 MNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 2 677777763211010 11122211 122223456777654433322111 11257899999999998766554
No 173
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.45 E-value=0.003 Score=61.48 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=72.6
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEeccccccccccccccC-CCCCcEEeccCccccccCch--hhhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCS-LINLQTLLLRRCFYLMKWPS--KVMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~-L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 600 (1189)
...-.+||++|.+..++ .|..+..|..|.|.+|+|..+-+.+.. +++|++|.|.+| ++.++-+ .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 35678899999887774 477888999999999999988666654 677999999987 5555432 256778888988
Q ss_pred ccCCcccccCCC----CCCCCCCCceeCce
Q 048135 601 ITDVHLIKEMPL----GMEEWKCLQTLSNF 626 (1189)
Q Consensus 601 l~~~~~~~~~p~----~i~~L~~L~~L~~~ 626 (1189)
+-+|. ....+. -+.++++|++|++-
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehh
Confidence 88876 333222 25677778888653
No 174
>PRK06526 transposase; Provisional
Probab=96.39 E-value=0.0039 Score=66.19 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=51.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|.+|+|||+||.++.+....+++. +.|+ +..++...+..... .. .....+.+ + .+.-+
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~-v~f~------t~~~l~~~l~~~~~-----~~---~~~~~l~~-l-~~~dl 162 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHR-VLFA------TAAQWVARLAAAHH-----AG---RLQAELVK-L-GRYPL 162 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCc-hhhh------hHHHHHHHHHHHHh-----cC---cHHHHHHH-h-ccCCE
Confidence 35699999999999999987643322243 2332 33444444433211 11 11222322 2 23458
Q ss_pred EEecCCCCCChhhHH--hhccccCC-CCCCcEEEEEcCCc
Q 048135 221 IVLDNVWSKNYGLWK--TLKSPFMA-GTPGSKIIVTTRSV 257 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 257 (1189)
||+||+.......|. .+...+.. ...++ +|+||...
T Consensus 163 LIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 163 LIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred EEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 999999543222222 22222211 12344 88888854
No 175
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.38 E-value=0.013 Score=64.52 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=54.9
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCc-eEEEEecCC-cCHHHHHHHHHHHccCCCCCCCChhH-----HHHHHHHHH-
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNP-KAWVCVSED-FDVLKITKAILESVTSSPSNLKDLNQ-----VQIQLEKAI- 214 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~l~~~l- 214 (1189)
.|+|..|+|||||++.+.+......-+. ++|+.+.+. .++.++.+.+...+.....+...... ....+.+++
T Consensus 137 LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~ 216 (380)
T PRK12608 137 LIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLV 216 (380)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999877432222344 467777655 57888888888877654332221111 111222333
Q ss_pred -ccCceEEEecCC
Q 048135 215 -AGQKFLIVLDNV 226 (1189)
Q Consensus 215 -~~~~~LlvlDdv 226 (1189)
++++++||+|++
T Consensus 217 ~~GkdVVLvlDsl 229 (380)
T PRK12608 217 EQGKDVVILLDSL 229 (380)
T ss_pred HcCCCEEEEEeCc
Confidence 589999999999
No 176
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.097 Score=59.82 Aligned_cols=195 Identities=14% Similarity=0.082 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcC
Q 048135 102 GMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFD 181 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~ 181 (1189)
++++.++++.+.+..+.. .+-|.-. ....+|-+-++|++|.|||.||+++.+...+. |+.++.+
T Consensus 194 G~d~~~~el~~li~~i~~-Pe~~~~l-------Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vP------f~~isAp-- 257 (802)
T KOG0733|consen 194 GLDKTLAELCELIIHIKH-PEVFSSL-------GVRPPRGVLLHGPPGCGKTSLANAIAGELGVP------FLSISAP-- 257 (802)
T ss_pred ChHHHHHHHHHHHHHhcC-chhHhhc-------CCCCCCceeeeCCCCccHHHHHHHHhhhcCCc------eEeecch--
Confidence 556666666665554321 1212100 01234556799999999999999999965544 2334332
Q ss_pred HHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEEecCCCCCCh-hhH----------HhhccccC---C---C
Q 048135 182 VLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIVLDNVWSKNY-GLW----------KTLKSPFM---A---G 244 (1189)
Q Consensus 182 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-~~~----------~~l~~~l~---~---~ 244 (1189)
+|+..+.+ .+.+.+.+...+.-..-++++++|+++.-.+ .+| .++...+. . .
T Consensus 258 ------eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ------EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ------hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 33333322 2334444445555567889999999954211 011 12222211 1 1
Q ss_pred CCCcEEEE-EcCCchhhh---ccC-CCceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 245 TPGSKIIV-TTRSVDVAL---TLG-PIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 245 ~~gs~iiv-Ttr~~~v~~---~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
+.+--||- |+|-..+-. ..+ .+..+.+.--+++.-.+++...+-+-+-. ..-++..+|+.---+.|---.|+..
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCccchhHHHHHH
Confidence 23333333 444332221 122 23456777667766667777665433322 2334544443333333333445555
Q ss_pred HHhhh
Q 048135 320 LGGLL 324 (1189)
Q Consensus 320 ~g~~L 324 (1189)
.|+..
T Consensus 406 ~Aa~v 410 (802)
T KOG0733|consen 406 EAAFV 410 (802)
T ss_pred HHHHH
Confidence 55444
No 177
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.056 Score=65.27 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=64.9
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc-CCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT-RSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++=++|+|++..-....++.+...+.....++.+|++| +...+...+ ....++++++++.++..+.+.+.+-..+..
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 345588999997666667888887776655566666544 444444332 233689999999999988888766433221
Q ss_pred ccchhHHHHHHHHHHHhCCChHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
.. .+.+..|++.++|..--+
T Consensus 200 i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 200 AE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CC----HHHHHHHHHHcCCCHHHH
Confidence 11 245678999999976543
No 178
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.29 E-value=0.083 Score=63.02 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=65.2
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|+|++..-....++.+...+....+.+.+|.+|.+ ..+...+ .....++.++++.++..+.+.+.+...+.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 356668999999766666778887777665556666665543 3332221 22357899999999988888877644332
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
.. -.+.+..|++.++|.+-.+.
T Consensus 197 ~i----d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 197 KY----EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHH
Confidence 11 13456778999999875443
No 179
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.22 E-value=0.097 Score=62.34 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=78.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+-+-++|++|.|||++|+++.+..... ++.++ ..++.. ...+ .....+...+.......+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~------~~~i~----~~~~~~----~~~g-----~~~~~l~~~f~~a~~~~p~ 149 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVP------FFSIS----GSDFVE----MFVG-----VGASRVRDLFEQAKKNAPC 149 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC------eeecc----HHHHHH----HHhc-----ccHHHHHHHHHHHHhcCCC
Confidence 345699999999999999998753222 22222 111111 1100 0112233333444455678
Q ss_pred EEEecCCCCCC----------hhhH----HhhccccCC--CCCCcEEEEEcCCchhhhc-----cCCCceEeCCCCChhh
Q 048135 220 LIVLDNVWSKN----------YGLW----KTLKSPFMA--GTPGSKIIVTTRSVDVALT-----LGPIDYYNLELLSDDD 278 (1189)
Q Consensus 220 LlvlDdv~~~~----------~~~~----~~l~~~l~~--~~~gs~iivTtr~~~v~~~-----~~~~~~~~l~~L~~~~ 278 (1189)
+|++||++.-. ...+ ..+...+.. ...+-.||.||...+.... ...+..++++..+.++
T Consensus 150 Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 150 IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred EEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 99999994410 0111 122222211 1234556667765432221 1233578899889888
Q ss_pred HHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCC
Q 048135 279 CWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGL 313 (1189)
Q Consensus 279 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 313 (1189)
-.++|..+.-.... ....+ ...+++.+.|.
T Consensus 230 R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 230 REEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred HHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 88898887632211 11112 24677777764
No 180
>CHL00176 ftsH cell division protein; Validated
Probab=96.18 E-value=0.085 Score=63.78 Aligned_cols=149 Identities=21% Similarity=0.269 Sum_probs=81.1
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-++|++|.|||++|+++++...+. |+.++. .++... ..+ .....+...+.+.....+.
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p------~i~is~----s~f~~~----~~g-----~~~~~vr~lF~~A~~~~P~ 277 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVP------FFSISG----SEFVEM----FVG-----VGAARVRDLFKKAKENSPC 277 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC------eeeccH----HHHHHH----hhh-----hhHHHHHHHHHHHhcCCCc
Confidence 446799999999999999998743221 222221 111110 000 0112233334444567789
Q ss_pred EEEecCCCCC-----------Ch---hhHHhhccccCC--CCCCcEEEEEcCCchhhhc-c----CCCceEeCCCCChhh
Q 048135 220 LIVLDNVWSK-----------NY---GLWKTLKSPFMA--GTPGSKIIVTTRSVDVALT-L----GPIDYYNLELLSDDD 278 (1189)
Q Consensus 220 LlvlDdv~~~-----------~~---~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~ 278 (1189)
+|++||++.- +. ..+..+...+.. ...+-.||.||...+.... . ..+..+.++..+.++
T Consensus 278 ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 278 IVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred EEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHH
Confidence 9999999431 00 112233322221 2345567777766543321 1 123578888889999
Q ss_pred HHHHHHHhhccCCCcccchhHHHHHHHHHHHhCC
Q 048135 279 CWSIFEKHAFENRDASAHQNLELIHAKVVEKCKG 312 (1189)
Q Consensus 279 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g 312 (1189)
-.++++.++-... .. + ......+++.+.|
T Consensus 358 R~~IL~~~l~~~~-~~--~--d~~l~~lA~~t~G 386 (638)
T CHL00176 358 RLDILKVHARNKK-LS--P--DVSLELIARRTPG 386 (638)
T ss_pred HHHHHHHHHhhcc-cc--h--hHHHHHHHhcCCC
Confidence 9999988764311 11 1 1233567777776
No 181
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.082 Score=57.96 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=64.4
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-+...-+.+...+..-..++.+|++|.+. .+...+ +-...+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 456689999997766666677777666655677777777653 333332 223678999999999888776531 1
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANLG 321 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~g 321 (1189)
+ ...+..++..++|.|+.+..+.
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1225678999999998765443
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.11 Score=57.09 Aligned_cols=93 Identities=8% Similarity=0.049 Sum_probs=65.0
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++=++|+|+++.-.....+.+...+..-.+++.+|++|.+. .+...+ +-...+.+.+++++++.+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---~- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---A- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc---c-
Confidence 555688899997777778888888777766677777777654 343332 2236899999999999888876531 1
Q ss_pred ccchhHHHHHHHHHHHhCCChHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
. ...+...+..++|.|..+
T Consensus 182 -~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred -C----hHHHHHHHHHcCCCHHHH
Confidence 1 112456788999999643
No 183
>PRK08181 transposase; Validated
Probab=96.12 E-value=0.0092 Score=63.67 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=51.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+.++|..|+|||.||.++.+....+++ .++|+. ..++...+..... ..+.++. + +.+. +-=||
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~a~~~g~-~v~f~~------~~~L~~~l~~a~~-----~~~~~~~---l-~~l~-~~dLL 171 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIENGW-RVLFTR------TTDLVQKLQVARR-----ELQLESA---I-AKLD-KFDLL 171 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHcCC-ceeeee------HHHHHHHHHHHHh-----CCcHHHH---H-HHHh-cCCEE
Confidence 459999999999999998864322223 344543 3445555543311 1122222 2 2222 34499
Q ss_pred EecCCCCCChhhHH--hhccccCCC-CCCcEEEEEcCCc
Q 048135 222 VLDNVWSKNYGLWK--TLKSPFMAG-TPGSKIIVTTRSV 257 (1189)
Q Consensus 222 vlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 257 (1189)
||||+.......|. .+...+... ..+ .+||||...
T Consensus 172 IIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 172 ILDDLAYVTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred EEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 99999543332332 222222211 123 588888853
No 184
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.089 Score=57.98 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=62.9
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcC-Cchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTR-SVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|+|++..-+....+.+...+..-. .+.+|++|. ...+...+ +-...+++.++++++..+.+.+......
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-
Confidence 3566689999997766667777777665544 345555544 33333332 2336899999999999999887642110
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
.......++..++|.|..+..
T Consensus 200 ------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 ------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ------chhHHHHHHHHcCCCHHHHHH
Confidence 011135789999999976554
No 185
>PRK06921 hypothetical protein; Provisional
Probab=96.07 E-value=0.014 Score=62.59 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=25.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEe
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCV 176 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~ 176 (1189)
.+.++|..|+|||+||.++.+....+.-..+++++.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 356999999999999999988543331233456553
No 186
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.04 E-value=0.09 Score=58.35 Aligned_cols=181 Identities=20% Similarity=0.150 Sum_probs=100.8
Q ss_pred EEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccC--ceE
Q 048135 144 LVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQ--KFL 220 (1189)
Q Consensus 144 I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~--~~L 220 (1189)
|.|-+|.|||.+...|+.+.....-. .++++....--...+++..|...+...........+.++.+.++..+. -+|
T Consensus 180 VsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~l 259 (529)
T KOG2227|consen 180 VSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLL 259 (529)
T ss_pred eeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEE
Confidence 99999999999999999864332211 345665554456677777777776222111112245666677776554 488
Q ss_pred EEecCCCCCChhhHHhhccccCC-CCCCcEEEEEcC--Cchhhh----cc-----CCCceEeCCCCChhhHHHHHHHhhc
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMA-GTPGSKIIVTTR--SVDVAL----TL-----GPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr--~~~v~~----~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
+|+|.++.-....-..+...+.| .-+++|+|+.-- .-+..+ .. .....+..++.+.++-.+++..+.-
T Consensus 260 lVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 260 LVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred EEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 99999843111111122222222 236777765321 111111 11 1224677889999999999998863
Q ss_pred cCCCc-ccchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 048135 289 ENRDA-SAHQNLELIHAKVVEKCKGLPQAAANLGGLL 324 (1189)
Q Consensus 289 ~~~~~-~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L 324 (1189)
..... ..+...+-.|++++.-.|-+=-|+.+.-+.+
T Consensus 340 ~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 340 EESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred cccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 22211 1122344455555555566666666655544
No 187
>PRK09183 transposase/IS protein; Provisional
Probab=96.01 E-value=0.0084 Score=64.15 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=50.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|..|+|||+||.++.+....+++. +.++. ..++...+...... .. ....+++.+ .+.-+
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~-v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~dl 167 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIK-VRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAPRL 167 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCe-EEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCCCE
Confidence 45699999999999999987642222232 23332 23333333222110 11 222233322 34569
Q ss_pred EEecCCCCCChhhHH--hhccccCCC-CCCcEEEEEcCC
Q 048135 221 IVLDNVWSKNYGLWK--TLKSPFMAG-TPGSKIIVTTRS 256 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 256 (1189)
+|+||+.-.....+. .+...+... ..++ +||||..
T Consensus 168 LiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 168 LIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred EEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 999999653332232 232222111 2354 8888874
No 188
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.0032 Score=37.98 Aligned_cols=19 Identities=42% Similarity=0.767 Sum_probs=9.7
Q ss_pred ccEEecccccccccccccc
Q 048135 549 LRYLDMSNTAISSLPESTC 567 (1189)
Q Consensus 549 L~~L~L~~~~i~~LP~~i~ 567 (1189)
|++|||++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 189
>PRK04132 replication factor C small subunit; Provisional
Probab=96.01 E-value=0.12 Score=63.81 Aligned_cols=156 Identities=12% Similarity=0.038 Sum_probs=95.5
Q ss_pred EEc--cCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 144 LVG--MGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 144 I~G--~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+.| +.++||||+|.+++++.--..++ ..+-++.+...+...+ +++++.+...... -..+.-+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~--------------~~~~~KV 633 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKPI--------------GGASFKI 633 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc--------------CCCCCEE
Confidence 446 67899999999998853111222 2455666665444433 3333332211000 0124569
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCcccchh
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQN 298 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~ 298 (1189)
+|+|+++.-..++.+.+...+......+++|.+|.+. .+.... +-...+++.+++.++-.+.+.+.+...+-.. +
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-~-- 710 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-T-- 710 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC-C--
Confidence 9999998777778888887777655566777666554 332222 2236899999999988888777654322111 1
Q ss_pred HHHHHHHHHHHhCCChHHHH
Q 048135 299 LELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 299 ~~~~~~~i~~~c~g~Plai~ 318 (1189)
.+....|++.++|.+-.+.
T Consensus 711 -~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 -EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred -HHHHHHHHHHcCCCHHHHH
Confidence 3456889999999885443
No 190
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.078 Score=59.35 Aligned_cols=142 Identities=18% Similarity=0.206 Sum_probs=79.4
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEE
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIV 222 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Llv 222 (1189)
.+.|++|+|||+||..+..+ ..|..+ .+-.+.++..+ .+......+.......-+..--.||
T Consensus 542 Ll~Gp~~sGKTaLAA~iA~~---S~FPFv---KiiSpe~miG~------------sEsaKc~~i~k~F~DAYkS~lsiiv 603 (744)
T KOG0741|consen 542 LLEGPPGSGKTALAAKIALS---SDFPFV---KIISPEDMIGL------------SESAKCAHIKKIFEDAYKSPLSIIV 603 (744)
T ss_pred EEecCCCCChHHHHHHHHhh---cCCCeE---EEeChHHccCc------------cHHHHHHHHHHHHHHhhcCcceEEE
Confidence 48999999999999999863 225532 22222111100 0011112223333444566677899
Q ss_pred ecCCCCCChhhHHhhccc---------------cCCCCCCcEEEEEcCCchhhhccCCC----ceEeCCCCCh-hhHHHH
Q 048135 223 LDNVWSKNYGLWKTLKSP---------------FMAGTPGSKIIVTTRSVDVALTLGPI----DYYNLELLSD-DDCWSI 282 (1189)
Q Consensus 223 lDdv~~~~~~~~~~l~~~---------------l~~~~~gs~iivTtr~~~v~~~~~~~----~~~~l~~L~~-~~~~~l 282 (1189)
+||+ +..-+|-.++.. .|..+..--|+-||-...+...|+.. ..|.|+.++. ++..+.
T Consensus 604 vDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~v 681 (744)
T KOG0741|consen 604 VDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEV 681 (744)
T ss_pred Ecch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHH
Confidence 9999 433444433322 22222222345578788888888643 5789999987 777777
Q ss_pred HHHhh-ccCCCcccchhHHHHHHHHHHHh
Q 048135 283 FEKHA-FENRDASAHQNLELIHAKVVEKC 310 (1189)
Q Consensus 283 f~~~a-~~~~~~~~~~~~~~~~~~i~~~c 310 (1189)
+...- |. +.+.+.++++...+|
T Consensus 682 l~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 682 LEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHccCCC------cchhHHHHHHHhccc
Confidence 66642 32 223445566666655
No 191
>PRK10536 hypothetical protein; Provisional
Probab=95.96 E-value=0.017 Score=60.01 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=30.2
Q ss_pred HHHccCce---EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc
Q 048135 212 KAIAGQKF---LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV 257 (1189)
Q Consensus 212 ~~l~~~~~---LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 257 (1189)
.+++++.+ ++|+|++.+-+..+...+...+ +.+|+||+|=-..
T Consensus 168 ~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~ 213 (262)
T PRK10536 168 AYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDIT 213 (262)
T ss_pred HHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChh
Confidence 35667665 9999999887665555555444 5799999985543
No 192
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.95 E-value=0.08 Score=66.19 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCcc---ccC-c-CceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKE---VEG-F-NPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI- 214 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~---~~~-f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 214 (1189)
-+.++|.+|+|||++|+.+..... +.. + +..+|. + +...+... . ....+.++....+-+.+
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a~----~----~~~g~~e~~l~~i~~~~~ 271 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLAG----T----KYRGDFEERLKAVVSEIE 271 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhhh----c----cccchHHHHHHHHHHHHh
Confidence 356999999999999998887531 221 1 344443 1 12221110 0 00112222222232332
Q ss_pred ccCceEEEecCCCCC---------ChhhHHhhccccCCCCCCcEEEEEcCCchhhhcc-------CCCceEeCCCCChhh
Q 048135 215 AGQKFLIVLDNVWSK---------NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL-------GPIDYYNLELLSDDD 278 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~~~~~~~l~~L~~~~ 278 (1189)
+.++.+|++|++..- ..+.-+.+...+..+ .-++|-+|..++..... .-...++++.++.++
T Consensus 272 ~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~ 349 (731)
T TIGR02639 272 KEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEE 349 (731)
T ss_pred ccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHH
Confidence 346789999998521 011122233333221 23455555433221111 122578999999999
Q ss_pred HHHHHHHhh
Q 048135 279 CWSIFEKHA 287 (1189)
Q Consensus 279 ~~~lf~~~a 287 (1189)
..+++....
T Consensus 350 ~~~il~~~~ 358 (731)
T TIGR02639 350 TVKILKGLK 358 (731)
T ss_pred HHHHHHHHH
Confidence 999998654
No 193
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.89 E-value=0.013 Score=64.16 Aligned_cols=98 Identities=14% Similarity=0.253 Sum_probs=58.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+-|+|..|+|||.||.++++....+++. +.++++ ..++..+...... .+.. ..+. .++ +-=|
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~-v~~~~~------~~l~~~lk~~~~~-----~~~~---~~l~-~l~-~~dl 220 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVS-STLLHF------PEFIRELKNSISD-----GSVK---EKID-AVK-EAPV 220 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCC-EEEEEH------HHHHHHHHHHHhc-----CcHH---HHHH-Hhc-CCCE
Confidence 45699999999999999999865433244 445544 3455555544321 1122 2222 232 3558
Q ss_pred EEecCCCCCChhhHHh--hcccc-CCC-CCCcEEEEEcC
Q 048135 221 IVLDNVWSKNYGLWKT--LKSPF-MAG-TPGSKIIVTTR 255 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr 255 (1189)
|||||+-.+....|.. +...+ ... ..+-.+|+||.
T Consensus 221 LiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 221 LMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 9999997666667753 43333 221 23456888887
No 194
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.88 E-value=0.037 Score=66.27 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+++.|+|+.|+||||+++.+...
T Consensus 111 ~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999874
No 195
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.87 E-value=0.13 Score=56.44 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=65.5
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++=++|+|+++.-.....+.+...+..-.+++.+|.+|.+. .+...+ +-...+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 345588999997777778888888777766677777766654 344333 333689999999999988776531 1
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
. .+..++..++|.|+.+..+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 1 1346789999999877544
No 196
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.08 Score=63.76 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=63.3
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc-CCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT-RSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-.....+.+...+......+.+|++| ....+...+ .....++++.++.++..+.+...+-..+..
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 445578999996655566777777666544566666544 444444322 223578889999988887776654322211
Q ss_pred ccchhHHHHHHHHHHHhCCCh-HHHHHHHh
Q 048135 294 SAHQNLELIHAKVVEKCKGLP-QAAANLGG 322 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~P-lai~~~g~ 322 (1189)
.. .+....|++.++|.. .|+..+-.
T Consensus 198 i~----~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 198 IS----DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 345677889999866 45544433
No 197
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.77 E-value=0.059 Score=67.84 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=66.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCcc---cc-C-cCceEE-EEecCCcCHHHHHHHHHHHccCCCCCCCChh-HHHHHHHHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKE---VE-G-FNPKAW-VCVSEDFDVLKITKAILESVTSSPSNLKDLN-QVQIQLEKAI 214 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~---~~-~-f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l 214 (1189)
|.++|.+|+||||+|+.+..... +. . .+..+| +.++. + ........+.+ .+...+.+.-
T Consensus 211 ~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l--------~ag~~~~ge~e~~lk~ii~e~~ 276 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L--------QAGASVKGEFENRLKSVIDEVK 276 (852)
T ss_pred eeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h--------hcccccchHHHHHHHHHHHHHH
Confidence 45999999999999998886431 11 1 233343 22221 0 00000011111 1222222221
Q ss_pred -ccCceEEEecCCCCCC-------hhhHHhhccccCCCCCCcEEEEEcCCchhhhcc-------CCCceEeCCCCChhhH
Q 048135 215 -AGQKFLIVLDNVWSKN-------YGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL-------GPIDYYNLELLSDDDC 279 (1189)
Q Consensus 215 -~~~~~LlvlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~~~~~~~l~~L~~~~~ 279 (1189)
.+++.+|++|++..-. ..+-..+..+....+ .-++|-||...+..... .-...+++++++.++.
T Consensus 277 ~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~ 355 (852)
T TIGR03345 277 ASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETA 355 (852)
T ss_pred hcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHH
Confidence 2468999999985421 111112222222221 34566666653332221 1225899999999999
Q ss_pred HHHHHHhh
Q 048135 280 WSIFEKHA 287 (1189)
Q Consensus 280 ~~lf~~~a 287 (1189)
.+++....
T Consensus 356 ~~iL~~~~ 363 (852)
T TIGR03345 356 IRMLRGLA 363 (852)
T ss_pred HHHHHHHH
Confidence 99975443
No 198
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.77 E-value=0.0029 Score=60.97 Aligned_cols=86 Identities=22% Similarity=0.122 Sum_probs=45.7
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCc-eEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNP-KAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
-++|..|+|||++|+.++... +. ..-+.++...+..++....--. ..........+...++ +..++
T Consensus 3 lL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~---~~~~~~~~~~l~~a~~-----~~~il 69 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPS---NGQFEFKDGPLVRAMR-----KGGIL 69 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET----TTTTCEEE-CCCTTHH-----EEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeec---cccccccccccccccc-----ceeEE
Confidence 489999999999999988642 22 2235666666666554322111 0000000000111111 78899
Q ss_pred EecCCCCCChhhHHhhcccc
Q 048135 222 VLDNVWSKNYGLWKTLKSPF 241 (1189)
Q Consensus 222 vlDdv~~~~~~~~~~l~~~l 241 (1189)
|||++.....+.++.+...+
T Consensus 70 ~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 70 VLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EESSCGG--HHHHHTTHHHH
T ss_pred EECCcccCCHHHHHHHHHHH
Confidence 99999755555555554443
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.76 E-value=0.0065 Score=60.81 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=49.3
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+.|+|..|+|||.||.++.+....+++. +.|+. ..+++..+-.. . .....++ +.+.+.+ -=||
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~g~~-v~f~~------~~~L~~~l~~~----~-~~~~~~~----~~~~l~~-~dlL 112 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRKGYS-VLFIT------ASDLLDELKQS----R-SDGSYEE----LLKRLKR-VDLL 112 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE------HHHHHHHHHCC----H-CCTTHCH----HHHHHHT-SSCE
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccCCcc-eeEee------cCceecccccc----c-cccchhh----hcCcccc-ccEe
Confidence 4599999999999999988753333243 45554 34444444321 1 1112222 2233333 3478
Q ss_pred EecCCCCCChhhHHh--hccccCCC-CCCcEEEEEcCC
Q 048135 222 VLDNVWSKNYGLWKT--LKSPFMAG-TPGSKIIVTTRS 256 (1189)
Q Consensus 222 vlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 256 (1189)
||||+-......|.. +...+... +.+ .+||||..
T Consensus 113 ilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 113 ILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp EEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 899996655445543 11111111 223 58888874
No 200
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.71 E-value=0.032 Score=59.52 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=35.4
Q ss_pred eEEccCCCcHHHHHHHHhcCcccc----C-cCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVE----G-FNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~----~-f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
-|+|.+|+|||+||.+++-..... + =..++||+-...|....+. +|+++..
T Consensus 42 Ei~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 42 EIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred EEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 399999999999997775432221 2 2358899988889887764 5666543
No 201
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.71 E-value=0.067 Score=61.20 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=71.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
++.|.|+-++||||+++.+..... +..+++...+. .+..++ .+.. ..+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~----~~~iy~~~~d~~~~~~~l-~d~~-----------------~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL----EEIIYINFDDLRLDRIEL-LDLL-----------------RAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC----cceEEEEecchhcchhhH-HHHH-----------------HHHHHhhccCCc
Confidence 567999999999999976655321 11444433222 111111 1111 111111112788
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhc-----c-CCCceEeCCCCChhhHHHH
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALT-----L-GPIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-----~-~~~~~~~l~~L~~~~~~~l 282 (1189)
.|+||.|... ..|......+.+.++. +|++|+-+..+... . +-...+++-||+..|...+
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 9999999554 6799888888777666 88888876544322 1 2335789999999887664
No 202
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.71 E-value=0.005 Score=62.86 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=36.3
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEecccc--ccc-cccccccCCCCCcEEeccCccccccCchh---hhccccCC
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNT--AIS-SLPESTCSLINLQTLLLRRCFYLMKWPSK---VMNLINLR 597 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~--~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~ 597 (1189)
..|..|++.+..++.+ ..+..|++|++|.++.| ++. .++-...++++|++|++++| .++. +++ +.++.||.
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchh
Confidence 3344444444333322 12334556666666655 322 34434444466666666655 2222 121 34455555
Q ss_pred cccccCCc
Q 048135 598 HLDITDVH 605 (1189)
Q Consensus 598 ~L~l~~~~ 605 (1189)
.|++.+|.
T Consensus 120 ~Ldl~n~~ 127 (260)
T KOG2739|consen 120 SLDLFNCS 127 (260)
T ss_pred hhhcccCC
Confidence 55555554
No 203
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.0029 Score=65.06 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=44.9
Q ss_pred CCCCCcccccccccc--ccCCCCCCCCCccceEeeccCCCCcccCCCCC-CCCcCeEEEeccCCC--ccccccccCCCcc
Q 048135 991 GRSLGENMTWKFEIR--KSMPESPINLECLHQIYIWDCSSFTSFPKGGL-PNTLSRISIGKCENL--VALPDRMHNLSSL 1065 (1189)
Q Consensus 991 ~~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~-~~~L~~L~l~~c~~l--~~lp~~~~~l~~L 1065 (1189)
|+.+.++++.+|... ..+-..+.++|.|+.|+|+.|+.-..+..... ..+|++|.+.+. .+ +.....+..++.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcchhh
Confidence 344444444444322 12222356789999999988754333322212 238999999873 32 2233455677788
Q ss_pred ccccc
Q 048135 1066 QELEI 1070 (1189)
Q Consensus 1066 ~~L~l 1070 (1189)
++|++
T Consensus 149 telHm 153 (418)
T KOG2982|consen 149 TELHM 153 (418)
T ss_pred hhhhh
Confidence 88877
No 204
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.15 Score=59.31 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=20.8
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++-|-.+|++|.|||++|+++.+.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhh
Confidence 345668999999999999999984
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.62 E-value=0.12 Score=57.15 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=64.3
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++=++|+|+++.-....++.+...+..-.+++.+|.+|.+ ..+...+ +-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 44558889999887788889988888776677776666655 4444332 233689999999999998887642 1
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
. + ...++..++|.|..+..+
T Consensus 206 ~--~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A--D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755433
No 206
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.61 E-value=0.098 Score=66.26 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCcc---ccC--cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH-H
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKE---VEG--FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA-I 214 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~---~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l 214 (1189)
-|.++|.+|+|||++|+.++.... +.. -+..+|. + +...++. +... ..+.++....+-+. -
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a-------g~~~-~ge~e~rl~~i~~~~~ 268 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA-------GTKY-RGEFEERLKRIFDEIQ 268 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-------cCCC-ccHHHHHHHHHHHHHH
Confidence 456999999999999998876432 222 1345553 2 2222211 1111 11222222222222 2
Q ss_pred ccCceEEEecCCCCC-------ChhhHHhhccccCCCCCCcEEEEEcCCchhhhcc-------CCCceEeCCCCChhhHH
Q 048135 215 AGQKFLIVLDNVWSK-------NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL-------GPIDYYNLELLSDDDCW 280 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~-------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~~~~~~~l~~L~~~~~~ 280 (1189)
..++.+|++|++..- .......+..+....+ .-++|.+|..++..... .....++++..+.++..
T Consensus 269 ~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~ 347 (821)
T CHL00095 269 ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETI 347 (821)
T ss_pred hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHH
Confidence 356889999999420 0011122222221221 24566666655432221 12256788888989988
Q ss_pred HHHHHh
Q 048135 281 SIFEKH 286 (1189)
Q Consensus 281 ~lf~~~ 286 (1189)
+++...
T Consensus 348 aILr~l 353 (821)
T CHL00095 348 EILFGL 353 (821)
T ss_pred HHHHHH
Confidence 887653
No 207
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.22 Score=59.68 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=62.0
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEE-EcCCchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIV-TTRSVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++-++|+|++..-....+..+...+........+|+ ||....+...+ .....++..+++.++..+.+.+.+-..+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 34566889999966555677777766655434445554 44433333222 22357889999999988888776643221
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
... .+....|++.++|.+..+.
T Consensus 197 ~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 197 EYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CCC----HHHHHHHHHHcCCCHHHHH
Confidence 111 3456778889988775443
No 208
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.51 E-value=0.029 Score=54.22 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=57.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceE--EEEecCCcCHHHHHHHHHHHc-----cCCC-CCCCCh-------hHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKA--WVCVSEDFDVLKITKAILESV-----TSSP-SNLKDL-------NQV 206 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~~~l-----~~~~-~~~~~~-------~~~ 206 (1189)
+-|++-.|.||||.|....-...-+++...+ |+.-.........++.+- .+ +... ....+. .+.
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 3488888999999997665432222233222 222222334444444430 00 0000 000111 112
Q ss_pred HHHHHHHHccCce-EEEecCCCCC---ChhhHHhhccccCCCCCCcEEEEEcCCch
Q 048135 207 QIQLEKAIAGQKF-LIVLDNVWSK---NYGLWKTLKSPFMAGTPGSKIIVTTRSVD 258 (1189)
Q Consensus 207 ~~~l~~~l~~~~~-LlvlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 258 (1189)
.+..++.+....| |+|||++-.. .....+.+...+.....+..||+|.|+..
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2334445544444 9999998321 11234445555555556778999999854
No 209
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.0012 Score=66.98 Aligned_cols=103 Identities=21% Similarity=0.219 Sum_probs=64.2
Q ss_pred CCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCch--hhhccccCCccc
Q 048135 523 FKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPS--KVMNLINLRHLD 600 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 600 (1189)
+.+.+-|++.+|.+..+. -..+++.|++|.|+-|+|+.|- .+..+++|+.|.|+.| .+..+-+ -+.+|++||.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 345666777777776552 2346777777777777777773 2667777777777776 4444432 246777788888
Q ss_pred ccCCcccccCCCC-----CCCCCCCceeCceec
Q 048135 601 ITDVHLIKEMPLG-----MEEWKCLQTLSNFIV 628 (1189)
Q Consensus 601 l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~ 628 (1189)
|..|.-...-+.. +.-|++|+.|+...+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 7776533333322 445667777765444
No 210
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.40 E-value=0.026 Score=59.29 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=54.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+.++|.+|+|||+||.++.+....+ -..+++++ ..++...+-..... ...+.+ .+.+.+. +.=+|
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~~dlL 166 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLR-GKSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-NVDLL 166 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-cCCEE
Confidence 4589999999999999998854322 22344553 34444444433321 111122 2333344 34588
Q ss_pred EecCCCCCChhhHHh--hccccCCC-CCCcEEEEEcCC
Q 048135 222 VLDNVWSKNYGLWKT--LKSPFMAG-TPGSKIIVTTRS 256 (1189)
Q Consensus 222 vlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 256 (1189)
|+||+.......|+. +...+... ...-.+||||..
T Consensus 167 vIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 167 VIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 899997655556663 22222111 122347777763
No 211
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.39 E-value=0.016 Score=58.69 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=50.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEec----CCc-----CHHH----HHHHHHHHccCCCCCCCChhHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVS----EDF-----DVLK----ITKAILESVTSSPSNLKDLNQVQ 207 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~----~~~-----~~~~----~~~~i~~~l~~~~~~~~~~~~~~ 207 (1189)
+.+.|++|.|||.||.+..-+.-..+ |+.++++.-. +.. +..+ ...-+...+..-. .....+.+.
T Consensus 22 v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~-~~~~~~~~~ 100 (205)
T PF02562_consen 22 VIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF-GKEKLEELI 100 (205)
T ss_dssp EEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS--TTCHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh-ChHhHHHHh
Confidence 45899999999999977765433334 8877776321 110 0000 0111111111100 111122211
Q ss_pred HH------HHHHHccC---ceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC
Q 048135 208 IQ------LEKAIAGQ---KFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS 256 (1189)
Q Consensus 208 ~~------l~~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 256 (1189)
.. --.+++++ ..++|+|++.+-...++..+.... +.|||||++=-.
T Consensus 101 ~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~ 155 (205)
T PF02562_consen 101 QNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDP 155 (205)
T ss_dssp HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE--
T ss_pred hcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCc
Confidence 10 01234444 358999999887777777776554 679999998543
No 212
>PRK04296 thymidine kinase; Provisional
Probab=95.34 E-value=0.018 Score=58.55 Aligned_cols=111 Identities=13% Similarity=0.013 Sum_probs=58.5
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCC--CCChhHHHHHHHHHHccCceE
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSN--LKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.|+|..|.||||+|.....+....+. .++.+. ..++.......++.+++..... ....+++...+++ ..++.-+
T Consensus 6 litG~~GsGKTT~~l~~~~~~~~~g~-~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dv 81 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEERGM-KVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDC 81 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHcCC-eEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCE
Confidence 48999999999999877764322222 222221 1122222233445555422211 2233445445544 2334458
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchh
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDV 259 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 259 (1189)
||+|.+.--+.++..++...+. ..|..||+|.++.+.
T Consensus 82 viIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 82 VLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred EEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 9999994422232333333322 357889999987543
No 213
>PRK12377 putative replication protein; Provisional
Probab=95.31 E-value=0.023 Score=59.81 Aligned_cols=99 Identities=17% Similarity=0.087 Sum_probs=53.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+.++|..|+|||+||.++.+....+ ...++++++. ++...+-..... ..... .+.+.+ .+-=||
T Consensus 104 l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~~dLL 167 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CKVDLL 167 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cCCCEE
Confidence 4599999999999999999854322 3335565443 344444433221 11111 122223 345699
Q ss_pred EecCCCCCChhhHHh--hccccCCC-CCCcEEEEEcCC
Q 048135 222 VLDNVWSKNYGLWKT--LKSPFMAG-TPGSKIIVTTRS 256 (1189)
Q Consensus 222 vlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 256 (1189)
||||+.......|.. +...+... ...--+||||..
T Consensus 168 iIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 168 VLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999995443344442 22222211 122337778763
No 214
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.30 E-value=0.13 Score=50.70 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=38.5
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCC
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELL 274 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L 274 (1189)
+++=++|+||++.-..+.+..+...+.....++++|++|++.+ +...+ +-...+.+.++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 3456899999988778889999888887778899998888765 22222 22245555554
No 215
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.28 E-value=0.045 Score=57.99 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=50.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCc-CceEEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhH-----HH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGF-NPKAWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQ-----VQ 207 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~ 207 (1189)
..|.|-.|+||||||+.+++....+ | +.++++-+.+.. .+.++.+++.+.-..+. .+.....+ ..
T Consensus 72 ~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a 150 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTG 150 (274)
T ss_pred EEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 3599999999999999999854332 4 345566666654 45556665554311110 11111111 12
Q ss_pred HHHHHHH--c-cCceEEEecCC
Q 048135 208 IQLEKAI--A-GQKFLIVLDNV 226 (1189)
Q Consensus 208 ~~l~~~l--~-~~~~LlvlDdv 226 (1189)
..+.+++ + ++.+|+++||+
T Consensus 151 ~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 151 LTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHhcCCeEEEEEeCh
Confidence 2355666 3 88999999999
No 216
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.49 Score=56.97 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=86.3
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH----
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI---- 214 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 214 (1189)
+|-+-++|++|.|||-||++++-...+. |+.++.. +..+.+.+. ....++...
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVP------F~svSGS--------EFvE~~~g~---------~asrvr~lf~~ar 400 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVP------FFSVSGS--------EFVEMFVGV---------GASRVRDLFPLAR 400 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCc------eeeechH--------HHHHHhccc---------chHHHHHHHHHhh
Confidence 4556699999999999999999865554 2333322 111111110 011222222
Q ss_pred ccCceEEEecCCCCC---------------ChhhHHhhccccCCCCCCcEE--EEEcCCchhhhcc-----CCCceEeCC
Q 048135 215 AGQKFLIVLDNVWSK---------------NYGLWKTLKSPFMAGTPGSKI--IVTTRSVDVALTL-----GPIDYYNLE 272 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~---------------~~~~~~~l~~~l~~~~~gs~i--ivTtr~~~v~~~~-----~~~~~~~l~ 272 (1189)
.+.+..+.+|+++.- ....++++...+..+..++.| +-+|+..++.... ..+..+.++
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 345677888877431 112344455444444333333 3466666665432 133578888
Q ss_pred CCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHH
Q 048135 273 LLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAA 317 (1189)
Q Consensus 273 ~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 317 (1189)
.-+.....++|..++-..... .+..++++ |+...-|.+=|.
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHH
Confidence 888899999999998543322 23345566 888887777443
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.08 Score=58.85 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=64.6
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++=++|+|+++.-.....+.+...+..-..++.+|.+|.+.+ +...+ +-...+.+.+++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C----
Confidence 5666899999977776777888877776666777777776543 44332 233578999999999888776532 1
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
. + .+.+..++..++|.|....
T Consensus 182 ~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred C-C---HHHHHHHHHHcCCCHHHHH
Confidence 1 1 1235678999999996443
No 218
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.29 Score=51.62 Aligned_cols=81 Identities=15% Similarity=0.304 Sum_probs=47.7
Q ss_pred cCCCCCeEEccCCCcHHHHHHHHhcCcccc--C-cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH
Q 048135 137 AWQRPPTLVGMGGIGKTTLARLVYNDKEVE--G-FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA 213 (1189)
Q Consensus 137 ~~~~~~~I~G~gG~GKTtla~~v~~~~~~~--~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 213 (1189)
.+.|.+-++|++|.|||+|++++++...++ . |....-|.+... .+...-..+ ...-+..+..+|.+.
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHH
Confidence 456777899999999999999999876543 2 443444444322 122211111 112234455566666
Q ss_pred HccCc--eEEEecCCC
Q 048135 214 IAGQK--FLIVLDNVW 227 (1189)
Q Consensus 214 l~~~~--~LlvlDdv~ 227 (1189)
+.++. +.+.+|.|.
T Consensus 245 v~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVE 260 (423)
T ss_pred HhCCCcEEEEEeHHHH
Confidence 66655 445679883
No 219
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.23 E-value=0.18 Score=56.35 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=49.3
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHH
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEK 285 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 285 (1189)
+.+=++|+|++..-.....+.+...+.....++.+|++|.+.. +...+ +-...+++.+++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 4455799999976666677778877776666777777776543 33222 2236899999999998877765
No 220
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0098 Score=35.87 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=18.9
Q ss_pred cceEEEeccCCCcccCccccCc
Q 048135 525 KLRVLSLKSYHIIELPNSIGRL 546 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~i~~l 546 (1189)
+|++||+++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 221
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.16 E-value=0.04 Score=58.67 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=46.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+.++|.+|+|||.||.++.++.. +. +. +.+++ ..++..++...... +....++.+.++. -=|
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~~-~dl 170 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELKK-VDL 170 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhhc-CCE
Confidence 35999999999999999998755 33 43 44443 44555555555432 1122233333322 238
Q ss_pred EEecCCCCCChhhHH
Q 048135 221 IVLDNVWSKNYGLWK 235 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~ 235 (1189)
|||||+-......|.
T Consensus 171 LIiDDlG~~~~~~~~ 185 (254)
T COG1484 171 LIIDDIGYEPFSQEE 185 (254)
T ss_pred EEEecccCccCCHHH
Confidence 999999665445554
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.079 Score=58.58 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=46.1
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc-
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG- 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~- 216 (1189)
++.+.|+|.+|+||||++..+......+++ .+..++.... ....+-++...+.++.+.....+...+...+...-..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 467889999999999999888754322213 2344544321 1222233333334433322234455555555443221
Q ss_pred CceEEEecCCC
Q 048135 217 QKFLIVLDNVW 227 (1189)
Q Consensus 217 ~~~LlvlDdv~ 227 (1189)
+.=++++|-.-
T Consensus 320 ~~DvVLIDTaG 330 (436)
T PRK11889 320 RVDYILIDTAG 330 (436)
T ss_pred CCCEEEEeCcc
Confidence 23467777663
No 223
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.06 E-value=0.065 Score=57.06 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=35.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccC-----cCceEEEEecCCcCHHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEG-----FNPKAWVCVSEDFDVLKITKAILES 192 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~ 192 (1189)
.++.|+|.+|+|||++|.+++....... -..++|++....++...+ .++++.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 3456999999999999998864322221 267899988877775544 334443
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.00 E-value=0.026 Score=62.27 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=52.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
..+.++|..|+|||+||.++.+....+++ .++++++ .++...+...-. . ...+... . .+.+.+ -=
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~t~------~~l~~~l~~~~~-~--~~~~~~~---~-~~~l~~-~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYRTA------DELIEILREIRF-N--NDKELEE---V-YDLLIN-CD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEEH------HHHHHHHHHHHh-c--cchhHHH---H-HHHhcc-CC
Confidence 34569999999999999999885432323 3455544 233333322111 0 0111111 1 222332 24
Q ss_pred EEEecCCCCCChhhHHh--hccccCCC-CCCcEEEEEcCC
Q 048135 220 LIVLDNVWSKNYGLWKT--LKSPFMAG-TPGSKIIVTTRS 256 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 256 (1189)
||||||+..+....|.. +...+... ..+-.+||||..
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996554334432 22222211 224468888874
No 225
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.98 E-value=0.015 Score=59.17 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=36.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC-CcCHHHHHHHHHHHccCC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE-DFDVLKITKAILESVTSS 196 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 196 (1189)
+++.++|+.|+||||.+.+++.....+ -..+..|+... .....+-++..++.++.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 345699999999999987776544333 33466776643 335566677777777654
No 226
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.91 E-value=0.14 Score=63.92 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=51.3
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc-eEE
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK-FLI 221 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~Ll 221 (1189)
.++|+.|+|||++|+.+.... +...+.++.++..+... +...++.... ....++ ...+.+.++.++ -++
T Consensus 488 lf~Gp~GvGKT~lA~~la~~l----~~~~~~~d~se~~~~~~----~~~lig~~~g-yvg~~~-~~~l~~~~~~~p~~Vv 557 (731)
T TIGR02639 488 LFTGPTGVGKTELAKQLAEAL----GVHLERFDMSEYMEKHT----VSRLIGAPPG-YVGFEQ-GGLLTEAVRKHPHCVL 557 (731)
T ss_pred EEECCCCccHHHHHHHHHHHh----cCCeEEEeCchhhhccc----HHHHhcCCCC-Ccccch-hhHHHHHHHhCCCeEE
Confidence 489999999999999998632 23345555544322111 1111221111 111111 112334444444 499
Q ss_pred EecCCCCCChhhHHhhccccCC
Q 048135 222 VLDNVWSKNYGLWKTLKSPFMA 243 (1189)
Q Consensus 222 vlDdv~~~~~~~~~~l~~~l~~ 243 (1189)
+||+++..+++.++.+...+..
T Consensus 558 llDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 558 LLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred EEechhhcCHHHHHHHHHhhcc
Confidence 9999988777788877776654
No 227
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.075 Score=64.13 Aligned_cols=91 Identities=21% Similarity=0.346 Sum_probs=53.2
Q ss_pred EEccCCCcHHHHHHHHhcCccccCc---CceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce-
Q 048135 144 LVGMGGIGKTTLARLVYNDKEVEGF---NPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF- 219 (1189)
Q Consensus 144 I~G~gG~GKTtla~~v~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~- 219 (1189)
..|+.|||||.||+++.... | +..+-+++|+...... ...+-+...+--..++ .-.+-+..+.++|
T Consensus 526 F~GPTGVGKTELAkaLA~~L----fg~e~aliR~DMSEy~EkHs-----VSrLIGaPPGYVGyee-GG~LTEaVRr~PyS 595 (786)
T COG0542 526 FLGPTGVGKTELAKALAEAL----FGDEQALIRIDMSEYMEKHS-----VSRLIGAPPGYVGYEE-GGQLTEAVRRKPYS 595 (786)
T ss_pred eeCCCcccHHHHHHHHHHHh----cCCCccceeechHHHHHHHH-----HHHHhCCCCCCceecc-ccchhHhhhcCCCe
Confidence 58999999999999887521 4 2333444443322222 2233333221111111 1234455567788
Q ss_pred EEEecCCCCCChhhHHhhccccCCC
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAG 244 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~ 244 (1189)
+|.||+|...+++..+-+...+.+|
T Consensus 596 ViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 596 VILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred EEEechhhhcCHHHHHHHHHHhcCC
Confidence 7888999888888888888777654
No 228
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.81 Score=51.18 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcC
Q 048135 109 SITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 109 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+|.+-|++-.+.+.-|.- ...+|.|---++|++|.|||++..+++|.
T Consensus 212 ~I~~Dl~~F~k~k~~Ykr-------vGkawKRGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKR-------VGKAWKRGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred HHHHHHHHHHhcchHHHh-------cCcchhccceeeCCCCCCHHHHHHHHHhh
Confidence 566666666666665631 12467777789999999999999999984
No 229
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.81 E-value=0.061 Score=56.01 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=31.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITK 187 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 187 (1189)
++.|+|.+|+|||++|.++..... +.-..++|++... ++...+.+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~-~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAA-RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECCC-CCHHHHHH
Confidence 455999999999999988765322 1245688998865 66555443
No 230
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.73 E-value=0.0016 Score=64.45 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=74.9
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
+..++..++||++.+.+..+-..|+.+..|..|+++.|.|..+|++++.+..++.+++..| .+...|.+.+++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4566788999999999888888888899999999999999999999999999999998876 788899999999999999
Q ss_pred cccCCc
Q 048135 600 DITDVH 605 (1189)
Q Consensus 600 ~l~~~~ 605 (1189)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 888775
No 231
>PRK13695 putative NTPase; Provisional
Probab=94.69 E-value=0.013 Score=58.78 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=22.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWV 174 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv 174 (1189)
+.|+|.+|+||||+++.+++.....++....|+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999998765332234333343
No 232
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.67 E-value=0.016 Score=54.24 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|++|+||||+|+++.+.
T Consensus 2 I~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999874
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.64 E-value=0.092 Score=52.09 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=26.0
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF 180 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~ 180 (1189)
.|+|.+|+||||+|..+...... .-..++|+......
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence 48999999999999998764322 12446677665544
No 234
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.61 E-value=0.57 Score=59.71 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=66.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCcccc---C--cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVE---G--FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI- 214 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~---~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 214 (1189)
.+.++|.+|+|||++|+.+..+.... . ....+|. + ++..+.. +... ..+.+.....+.+.+
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~-l----~~~~l~a-------~~~~-~g~~e~~l~~~l~~~~ 262 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA-L----DMGALIA-------GAKY-RGEFEERLKAVLNEVT 262 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE-e----eHHHHhh-------cchh-hhhHHHHHHHHHHHHH
Confidence 45699999999999999887643111 1 1333332 1 1111110 0000 012222222222233
Q ss_pred c-cCceEEEecCCCCCC-----h--hhHHhhccccCCCCCCcEEEEEcCCchhhhcc-------CCCceEeCCCCChhhH
Q 048135 215 A-GQKFLIVLDNVWSKN-----Y--GLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL-------GPIDYYNLELLSDDDC 279 (1189)
Q Consensus 215 ~-~~~~LlvlDdv~~~~-----~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~~~~~~~l~~L~~~~~ 279 (1189)
+ +++.+|++|++..-. . .+-..+..+....+ .-++|-+|...+....+ .-...+.++..+.++.
T Consensus 263 ~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~ 341 (852)
T TIGR03346 263 KSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDT 341 (852)
T ss_pred hcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHH
Confidence 2 468999999995311 0 01112222222222 23455555544332211 1224688999999999
Q ss_pred HHHHHHhh
Q 048135 280 WSIFEKHA 287 (1189)
Q Consensus 280 ~~lf~~~a 287 (1189)
.+++....
T Consensus 342 ~~iL~~~~ 349 (852)
T TIGR03346 342 ISILRGLK 349 (852)
T ss_pred HHHHHHHH
Confidence 99887653
No 235
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.42 Score=54.92 Aligned_cols=151 Identities=19% Similarity=0.255 Sum_probs=83.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
|-+||++|.|||-||++|+|..... |+.|..+ +++..... .+...+....++.-..-++.|
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~N------FisVKGP----ELlNkYVG---------ESErAVR~vFqRAR~saPCVI 608 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGAN------FISVKGP----ELLNKYVG---------ESERAVRQVFQRARASAPCVI 608 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccCc------eEeecCH----HHHHHHhh---------hHHHHHHHHHHHhhcCCCeEE
Confidence 4589999999999999999964432 3444322 12221111 111222222233334568999
Q ss_pred EecCCCCC-----Ch------hhHHhhccccCCC--CCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHHHH
Q 048135 222 VLDNVWSK-----NY------GLWKTLKSPFMAG--TPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWSIF 283 (1189)
Q Consensus 222 vlDdv~~~-----~~------~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf 283 (1189)
.+|.++.- +. ....++...+... -.|--||-.|..+++-... .-+...-|+.-+.+|-.+++
T Consensus 609 FFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~IL 688 (802)
T KOG0733|consen 609 FFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAIL 688 (802)
T ss_pred EecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHH
Confidence 99998541 11 1233444444322 3466677777777664432 12356778888889999998
Q ss_pred HHhhccCCCc-ccchhHHHHHHHHHHHhCCC
Q 048135 284 EKHAFENRDA-SAHQNLELIHAKVVEKCKGL 313 (1189)
Q Consensus 284 ~~~a~~~~~~-~~~~~~~~~~~~i~~~c~g~ 313 (1189)
+..+-....+ ...-+++++|.. .+|.|.
T Consensus 689 K~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 689 KTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 8876421111 223356666543 344443
No 236
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.55 E-value=0.062 Score=58.69 Aligned_cols=81 Identities=21% Similarity=0.174 Sum_probs=49.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 214 (1189)
+++-|+|.+|+||||||.+++.... +.-..++||+....++.. .+++++.+.. ...+.++....+...+
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~-~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQ-KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 3455999999999999988764322 114567888876666643 3344433211 2234455555555544
Q ss_pred c-cCceEEEecCC
Q 048135 215 A-GQKFLIVLDNV 226 (1189)
Q Consensus 215 ~-~~~~LlvlDdv 226 (1189)
+ +..-++|+|-|
T Consensus 130 ~s~~~~lIVIDSv 142 (325)
T cd00983 130 RSGAVDLIVVDSV 142 (325)
T ss_pred hccCCCEEEEcch
Confidence 3 34568999997
No 237
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.55 E-value=0.064 Score=54.04 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=24.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEE
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWV 174 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv 174 (1189)
..+.|.|+.|+||||+|+.+++.... .+...+++
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~-~~~~~~~~ 41 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKL-KYSNVIYL 41 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEE
Confidence 35679999999999999999874322 14445554
No 238
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.0061 Score=62.11 Aligned_cols=81 Identities=31% Similarity=0.284 Sum_probs=67.2
Q ss_pred hhcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccc--cccCCCCCcEEeccCccccccCch-----hhh
Q 048135 519 LLPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPE--STCSLINLQTLLLRRCFYLMKWPS-----KVM 591 (1189)
Q Consensus 519 ~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~--~i~~L~~L~~L~L~~~~~l~~lp~-----~i~ 591 (1189)
+..+++.|.||.|+-|.|+.+ ..+..+++|+.|+|+.|.|..+-+ -+.+|++|++|-|..|.....-+. .+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 467899999999999999988 347899999999999999987754 468999999999998866655543 357
Q ss_pred ccccCCccc
Q 048135 592 NLINLRHLD 600 (1189)
Q Consensus 592 ~L~~L~~L~ 600 (1189)
-|+||+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 788999886
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.49 E-value=0.078 Score=55.90 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=30.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKI 185 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 185 (1189)
++.|+|.+|+|||++|.++..... ..-..++|++.. .++...+
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~-~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAA-KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEECC-CCCHHHH
Confidence 445999999999999988875422 224567898876 5555443
No 240
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.47 E-value=0.027 Score=53.96 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCcccc-C-cCceEEEEecCCcCHH
Q 048135 106 KIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVE-G-FNPKAWVCVSEDFDVL 183 (1189)
Q Consensus 106 ~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~-~-f~~~~wv~~~~~~~~~ 183 (1189)
.|++++++++.+... ..++-|+|-.|+||+++|+.++...... . |..+- ... ..
T Consensus 6 ~~~~l~~~l~~~a~~------------------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~-~~-- 61 (138)
T PF14532_consen 6 AMRRLRRQLERLAKS------------------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CAS-LP-- 61 (138)
T ss_dssp HHHHHHHHHHHHHCS------------------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHC-TC--
T ss_pred HHHHHHHHHHHHhCC------------------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhh-Cc--
Confidence 567777777655432 2345699999999999999988753322 1 32210 000 00
Q ss_pred HHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEEecCCCCCChhhHHhhccccCCC-CCCcEEEEEcCCc
Q 048135 184 KITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIVLDNVWSKNYGLWKTLKSPFMAG-TPGSKIIVTTRSV 257 (1189)
Q Consensus 184 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~ 257 (1189)
.++++ + .+.--++++|++.-..+....+...+... ....|+|.||+..
T Consensus 62 ---~~~l~--------------------~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---AELLE--------------------Q---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---HHHHH--------------------H---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---HHHHH--------------------H---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 11111 1 24556889999665555555666555422 4677999998853
No 241
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.45 E-value=0.38 Score=60.50 Aligned_cols=150 Identities=18% Similarity=0.187 Sum_probs=77.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+-++|++|.|||++|+++.+..... | +.+.. . +++....+ .....+.......-+..+.+
T Consensus 489 giLL~GppGtGKT~lakalA~e~~~~-f-----i~v~~----~----~l~~~~vG-----ese~~i~~~f~~A~~~~p~i 549 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATESGAN-F-----IAVRG----P----EILSKWVG-----ESEKAIREIFRKARQAAPAI 549 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCC-E-----EEEeh----H----HHhhcccC-----cHHHHHHHHHHHHHhcCCEE
Confidence 35689999999999999999853321 2 22221 1 11111110 11112222223333456789
Q ss_pred EEecCCCCC--------Ch----hhHHhhccccCC--CCCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHH
Q 048135 221 IVLDNVWSK--------NY----GLWKTLKSPFMA--GTPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWS 281 (1189)
Q Consensus 221 lvlDdv~~~--------~~----~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~ 281 (1189)
|++|+++.- .. ....++...+.. ...+-.||.||...+..... ..+..+.++..+.++-.+
T Consensus 550 ifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~ 629 (733)
T TIGR01243 550 IFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKE 629 (733)
T ss_pred EEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHH
Confidence 999998431 00 112223333322 12344566677665543321 233578889889999999
Q ss_pred HHHHhhccCCCcccchhHHHHHHHHHHHhCCCh
Q 048135 282 IFEKHAFENRDASAHQNLELIHAKVVEKCKGLP 314 (1189)
Q Consensus 282 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 314 (1189)
+|..+.-+. ......++ ..+++.+.|.-
T Consensus 630 i~~~~~~~~-~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 630 IFKIHTRSM-PLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred HHHHHhcCC-CCCccCCH----HHHHHHcCCCC
Confidence 997765321 11112223 45666676643
No 242
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.44 E-value=0.035 Score=54.36 Aligned_cols=87 Identities=26% Similarity=0.322 Sum_probs=64.8
Q ss_pred hhhcCCCcceEEEeccCCCcccCcccc-CcccccEEeccccccccccc--cccCCCCCcEEeccCccccccCch----hh
Q 048135 518 DLLPKFKKLRVLSLKSYHIIELPNSIG-RLMHLRYLDMSNTAISSLPE--STCSLINLQTLLLRRCFYLMKWPS----KV 590 (1189)
Q Consensus 518 ~~~~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~i~~LP~--~i~~L~~L~~L~L~~~~~l~~lp~----~i 590 (1189)
+.|+.++.|.+|.|.+|.|+.+-..+. -+++|..|.|.+|+|.++-+ -+..++.|++|-+-+|. +...+. .+
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl 136 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVL 136 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEE
Confidence 347788899999999999999866664 45579999999998887632 25667889999888873 333322 26
Q ss_pred hccccCCcccccCCc
Q 048135 591 MNLINLRHLDITDVH 605 (1189)
Q Consensus 591 ~~L~~L~~L~l~~~~ 605 (1189)
.++++|+.||..+..
T Consensus 137 ~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKVT 151 (233)
T ss_pred EecCcceEeehhhhh
Confidence 788999999887643
No 243
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.37 E-value=0.027 Score=57.66 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=42.1
Q ss_pred CcccccEEeccccccccccccccCCCCCcEEeccCc--cccccCchhhhccccCCcccccCCc
Q 048135 545 RLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRC--FYLMKWPSKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 545 ~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~ 605 (1189)
.+..|++|++.+..++.+- .+-.|++|++|+++.| +....++.-..++++|++|++++|+
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4445566666665544331 1236889999999998 4455666656777999999999997
No 244
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.36 E-value=0.21 Score=61.76 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=69.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCcc---ccC--cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKE---VEG--FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI- 214 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~---~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 214 (1189)
.|-++|.+|+|||++|+.++.... +.. .++.+|. .+...+ +. +.. ...+.++....+.+.+
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-----l~~~~l----la---G~~-~~Ge~e~rl~~l~~~l~ 275 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-----LDIGSL----LA---GTK-YRGDFEKRFKALLKQLE 275 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-----ccHHHH----hc---ccc-hhhhHHHHHHHHHHHHH
Confidence 355999999999999999876421 111 2445542 112111 11 110 0112222222232333
Q ss_pred ccCceEEEecCCCC--------CChhhHHhhccccCCCCCCcEEEEEcCCchhhhcc-------CCCceEeCCCCChhhH
Q 048135 215 AGQKFLIVLDNVWS--------KNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL-------GPIDYYNLELLSDDDC 279 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~--------~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~~~~~~~l~~L~~~~~ 279 (1189)
+.++.+|++|++.. ....+...+..++...+ .-+||-+|..++..... .-...++++.++.+++
T Consensus 276 ~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~ 354 (758)
T PRK11034 276 QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEET 354 (758)
T ss_pred hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHH
Confidence 35678999999953 11122222333332221 34455555544332211 1225799999999999
Q ss_pred HHHHHHhh
Q 048135 280 WSIFEKHA 287 (1189)
Q Consensus 280 ~~lf~~~a 287 (1189)
.+++....
T Consensus 355 ~~IL~~~~ 362 (758)
T PRK11034 355 VQIINGLK 362 (758)
T ss_pred HHHHHHHH
Confidence 99988654
No 245
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.34 E-value=0.091 Score=57.73 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=36.8
Q ss_pred CeEEccCCCcHHHHHHHHhcCcccc----C-cCceEEEEecCCcCHHHHHHHHHHHccC
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVE----G-FNPKAWVCVSEDFDVLKITKAILESVTS 195 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~----~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 195 (1189)
.-|+|.+|+|||++|.+++-..... . =..++||+....|+..++. ++++.++.
T Consensus 99 teI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 99 TEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred EEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 3499999999999997765322211 1 2468899998888888764 45666543
No 246
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.33 E-value=0.31 Score=49.67 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=72.2
Q ss_pred cCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH---
Q 048135 137 AWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA--- 213 (1189)
Q Consensus 137 ~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--- 213 (1189)
..++.|--+|++|.|||.+|+++.+...+. | +.+.. . +-|-+.+ .+..+++++.
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp-~-----l~vka----t---~liGehV----------Gdgar~Ihely~r 205 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVP-L-----LLVKA----T---ELIGEHV----------GDGARRIHELYER 205 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccCCc-e-----EEech----H---HHHHHHh----------hhHHHHHHHHHHH
Confidence 445677799999999999999999965543 1 21211 1 1111121 1222222222
Q ss_pred -HccCceEEEecCCCCC------------ChhhHHhhccccCC--CCCCcEEEEEcCCchhhhcc---CCCceEeCCCCC
Q 048135 214 -IAGQKFLIVLDNVWSK------------NYGLWKTLKSPFMA--GTPGSKIIVTTRSVDVALTL---GPIDYYNLELLS 275 (1189)
Q Consensus 214 -l~~~~~LlvlDdv~~~------------~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~---~~~~~~~l~~L~ 275 (1189)
-+.-++.+.+|.++.- -.+..+++...+.. .+.|-.-|-.|.+.++.... .....++..--+
T Consensus 206 A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~ 285 (368)
T COG1223 206 ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPN 285 (368)
T ss_pred HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCC
Confidence 2345788888887431 11223333333322 24566666677766655432 122456666678
Q ss_pred hhhHHHHHHHhh
Q 048135 276 DDDCWSIFEKHA 287 (1189)
Q Consensus 276 ~~~~~~lf~~~a 287 (1189)
++|-.+++..++
T Consensus 286 ~eEr~~ile~y~ 297 (368)
T COG1223 286 DEERLEILEYYA 297 (368)
T ss_pred hHHHHHHHHHHH
Confidence 888899988887
No 247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.28 E-value=0.24 Score=49.93 Aligned_cols=124 Identities=17% Similarity=0.091 Sum_probs=60.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccC--CC------------CCCCChhHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTS--SP------------SNLKDLNQV 206 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~------------~~~~~~~~~ 206 (1189)
.++|.|..|.|||||++.+..-... -.+.+++.-. +.......+...+.. +. ...-+..+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 4579999999999999999874221 2233333211 111111111111110 00 001111222
Q ss_pred H-HHHHHHHccCceEEEecCCCCC-ChhhHHhhccccCCCCCCcEEEEEcCCchhhhccCCCceEeC
Q 048135 207 Q-IQLEKAIAGQKFLIVLDNVWSK-NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGPIDYYNL 271 (1189)
Q Consensus 207 ~-~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 271 (1189)
+ -.+.+.+-.++=++++|+..+. +....+.+...+.....|..||++|.+.+.... .++++.+
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 2 2345556677789999987542 112222222222221236678888888776543 3444443
No 248
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.27 E-value=0.17 Score=56.09 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=44.0
Q ss_pred CceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHh
Q 048135 217 QKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKH 286 (1189)
Q Consensus 217 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 286 (1189)
++=++|+|++..-+...-+.+...+.....+..+|++|.+.+ +...+ .....+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344556688866555566666655554444566777777654 33222 22367889999999988877653
No 249
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.26 E-value=0.26 Score=51.44 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=69.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCcc-----ccCc----------CceEEEEecCCc------CH----------------
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKE-----VEGF----------NPKAWVCVSEDF------DV---------------- 182 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~-----~~~f----------~~~~wv~~~~~~------~~---------------- 182 (1189)
..++|+|+.|.|||||.+.+..-.. +.-| ..+.||.-...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 3467999999999999999876211 1101 235555321111 11
Q ss_pred ------HHHHHHHHHHccCCCC-----CCCChhHHHHH-HHHHHccCceEEEecC----CCCCChhhHHhhccccCCCCC
Q 048135 183 ------LKITKAILESVTSSPS-----NLKDLNQVQIQ-LEKAIAGQKFLIVLDN----VWSKNYGLWKTLKSPFMAGTP 246 (1189)
Q Consensus 183 ------~~~~~~i~~~l~~~~~-----~~~~~~~~~~~-l~~~l~~~~~LlvlDd----v~~~~~~~~~~l~~~l~~~~~ 246 (1189)
.+...+.+++++.... ..-+-.+.|+. +.+.|..+.=|+|||. |+.......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 2344455555554322 12233445544 5677888899999996 3223333344444455443
Q ss_pred CcEEEEEcCCchhhhc
Q 048135 247 GSKIIVTTRSVDVALT 262 (1189)
Q Consensus 247 gs~iivTtr~~~v~~~ 262 (1189)
|..|+++|-+-+....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 8889999998665443
No 250
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.25 E-value=0.15 Score=56.43 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=37.0
Q ss_pred eEEccCCCcHHHHHHHHhcCccc----cC-cCceEEEEecCCcCHHHHHHHHHHHccC
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEV----EG-FNPKAWVCVSEDFDVLKITKAILESVTS 195 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~----~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 195 (1189)
-|+|.+|+|||+|+.+++-.... .+ -..++||+....|...++.+ +++.++.
T Consensus 130 EI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 130 EAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred EEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 39999999999999877532221 12 24688999999898887644 5665543
No 251
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.24 E-value=0.081 Score=57.78 Aligned_cols=82 Identities=21% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 214 (1189)
+++-|+|.+|+||||||.++....... -..++||+....++.. .+++++.+.. .....++....+....
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 345599999999999998776532211 3456788776655543 3444443211 2234455555555544
Q ss_pred c-cCceEEEecCCC
Q 048135 215 A-GQKFLIVLDNVW 227 (1189)
Q Consensus 215 ~-~~~~LlvlDdv~ 227 (1189)
+ +..-++|+|.|-
T Consensus 130 ~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 130 RSGAVDIIVVDSVA 143 (321)
T ss_pred hccCCcEEEEcchh
Confidence 3 456689999983
No 252
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.23 E-value=0.098 Score=56.89 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=45.4
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCcccc-CcCceEEEEecCCc-CHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVE-GFNPKAWVCVSEDF-DVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~-~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
.+++.|+|.+|+||||++..+......+ +-..+..|+..... ...+.+....+.++.+.....+..++...+.+ +.+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~~ 272 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LRD 272 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-ccC
Confidence 4567899999999999998877543322 21234555543321 22233333333333332223344445444443 333
Q ss_pred CceEEEecCC
Q 048135 217 QKFLIVLDNV 226 (1189)
Q Consensus 217 ~~~LlvlDdv 226 (1189)
.=+|++|..
T Consensus 273 -~d~vliDt~ 281 (282)
T TIGR03499 273 -KDLILIDTA 281 (282)
T ss_pred -CCEEEEeCC
Confidence 347777754
No 253
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.19 Score=58.17 Aligned_cols=96 Identities=11% Similarity=0.110 Sum_probs=61.7
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcC-Cchhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTR-SVDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+|-=..|+|.|.--....|..+..-+..-.+.-..|..|+ -..+...+ +-.+.|..+.++.++-...+...+-..+-.
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 4445889999977667889988887766545555555444 44444332 334789999999998888887776433322
Q ss_pred ccchhHHHHHHHHHHHhCCChH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQ 315 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Pl 315 (1189)
.+ .+...-|++...|..-
T Consensus 198 ~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 198 IE----EDALSLIARAAEGSLR 215 (515)
T ss_pred cC----HHHHHHHHHHcCCChh
Confidence 21 2344566667766543
No 254
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.16 E-value=0.12 Score=65.61 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=50.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC--CCCChhHHHHHHHHHHccCc-
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS--NLKDLNQVQIQLEKAIAGQK- 218 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~- 218 (1189)
+.++|+.|+|||++|+.+..... ..-...+.++++...+...+ ..-++.+.. +......+ .+.++.++
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~-~~~~~~i~~d~s~~~~~~~~----~~l~g~~~g~~g~~~~g~l----~~~v~~~p~ 668 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLF-DDEDAMVRIDMSEYMEKHSV----ARLIGAPPGYVGYEEGGQL----TEAVRRKPY 668 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhc-CCCCcEEEEechhhcccchH----HHhcCCCCCccCcccccHH----HHHHHcCCC
Confidence 44899999999999999886321 11122334444433221111 111221111 11111223 33333333
Q ss_pred eEEEecCCCCCChhhHHhhccccCCC
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPFMAG 244 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l~~~ 244 (1189)
.+++||++...+++.++.+...+..+
T Consensus 669 ~vlllDeieka~~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 669 SVVLFDEVEKAHPDVFNVLLQVLDDG 694 (852)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhcC
Confidence 48999999887888888877766443
No 255
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.13 E-value=0.095 Score=49.53 Aligned_cols=116 Identities=17% Similarity=0.304 Sum_probs=51.0
Q ss_pred CcCeEEEeccCCCcccc-ccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccc
Q 048135 1040 TLSRISIGKCENLVALP-DRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQE 1118 (1189)
Q Consensus 1040 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 1118 (1189)
+|+.+.+.+ .++.++ ..+.++++|+.+.+ .+ .+..+....+.++++|+.+.+.+ .+..++..
T Consensus 13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~-----------~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~ 75 (129)
T PF13306_consen 13 NLESITFPN--TIKKIGENAFSNCTSLKSINF-----------PN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDN 75 (129)
T ss_dssp T--EEEETS--T--EE-TTTTTT-TT-SEEEE-----------SS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TT
T ss_pred CCCEEEECC--CeeEeChhhcccccccccccc-----------cc--cccccceeeeecccccccccccc--cccccccc
Confidence 566666653 344443 23444445555544 32 25555556678887888888864 45555544
Q ss_pred cccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCCCCCCCcceeeecCCCCCC
Q 048135 1119 ELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEVGLPSSLLQLYIDGCPLLK 1188 (1189)
Q Consensus 1119 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~L~ 1188 (1189)
. +...++|+.+++.. .+..++...+.+. +|+.+.+.+ .+..++. ....+|++||
T Consensus 76 ~--F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~---------~~F~~~~~l~ 129 (129)
T PF13306_consen 76 A--FSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS--NITKIEE---------NAFKNCTKLK 129 (129)
T ss_dssp T--TTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT--B-SS-------------GGG------
T ss_pred c--ccccccccccccCc--cccEEchhhhcCC-CceEEEECC--CccEECC---------ccccccccCC
Confidence 3 44567888888854 3556665667776 777777654 3443432 3445676664
No 256
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.13 E-value=0.12 Score=65.55 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=49.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc-eE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK-FL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~L 220 (1189)
+.++|+.|+|||++|+++.+... ..-...+.+.++...+ . .....+.+........++ ...+.+.++.++ -+
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~-~~~~~~i~id~se~~~-~----~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~v 673 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMF-DSDDAMVRIDMSEFME-K----HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSV 673 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-cCCCcEEEEEhHHhhh-h----hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCe
Confidence 45899999999999999886321 1112233444432211 1 112222222211111111 112333333333 58
Q ss_pred EEecCCCCCChhhHHhhccccCC
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMA 243 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~ 243 (1189)
|+|||+...+.+.+..+...+..
T Consensus 674 LllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 674 ILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred EEEeehhhCCHHHHHHHHHHHhh
Confidence 99999977777778877665543
No 257
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.033 Score=52.43 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=22.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNP 170 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~ 170 (1189)
+.|.||+|+||||+++.+.+..+..+|..
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 45999999999999999987655444543
No 258
>PRK09354 recA recombinase A; Provisional
Probab=94.08 E-value=0.093 Score=57.80 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=50.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 214 (1189)
+++-|+|..|+||||||.++....... -..++||+....++.. .+++++.+.. .....++....+...+
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 345599999999999998876532211 4567898887766653 3444443211 2234455555555554
Q ss_pred c-cCceEEEecCCC
Q 048135 215 A-GQKFLIVLDNVW 227 (1189)
Q Consensus 215 ~-~~~~LlvlDdv~ 227 (1189)
+ +..-++|+|-|-
T Consensus 135 ~s~~~~lIVIDSva 148 (349)
T PRK09354 135 RSGAVDLIVVDSVA 148 (349)
T ss_pred hcCCCCEEEEeChh
Confidence 3 345689999983
No 259
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.08 E-value=0.15 Score=53.79 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=50.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCc------CceEEEEecCCcCHHHHHHHHHHHccCCCC---------CCCChh
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGF------NPKAWVCVSEDFDVLKITKAILESVTSSPS---------NLKDLN 204 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 204 (1189)
.+..|+|.+|+|||++|.++....... - ..++|++....++...+. ++.+....... ...+.+
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~-~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLP-GELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcc-cccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 345699999999999998876532111 2 567899887777765543 33333221100 123445
Q ss_pred HHHHHHHHHHc---c-CceEEEecCCC
Q 048135 205 QVQIQLEKAIA---G-QKFLIVLDNVW 227 (1189)
Q Consensus 205 ~~~~~l~~~l~---~-~~~LlvlDdv~ 227 (1189)
++...+++... . +.-++|+|.+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 55555554432 2 34488888873
No 260
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.03 E-value=0.15 Score=57.51 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=37.4
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhcc-CCCceEeCCC
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTL-GPIDYYNLEL 273 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~ 273 (1189)
++.-++++|+++.-..+.-..+...+......+++|++|.+. .+...+ .....+++.+
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 566789999997766666666776666666788888888743 232222 1224566665
No 261
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.02 E-value=0.29 Score=47.71 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=36.9
Q ss_pred HHHHHHHccCceEEEecC----CCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhccC
Q 048135 208 IQLEKAIAGQKFLIVLDN----VWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLG 264 (1189)
Q Consensus 208 ~~l~~~l~~~~~LlvlDd----v~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 264 (1189)
-.|.+.+-+++-+++-|. ++. .-.|+-+.-.-.-+..|+.|+++|-+.++...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp--~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDP--DLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCCh--HHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 346667778888999885 422 2456554332223346999999999998877664
No 262
>PHA00729 NTP-binding motif containing protein
Probab=94.01 E-value=0.056 Score=55.39 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+||||||.++.+.
T Consensus 20 IlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999998874
No 263
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.96 E-value=0.17 Score=50.39 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=61.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCc-cc--cC----cC--ceEEEEecCCcCHHHHHHHHHHHccCCCC----CCC--Chh
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDK-EV--EG----FN--PKAWVCVSEDFDVLKITKAILESVTSSPS----NLK--DLN 204 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~-~~--~~----f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~--~~~ 204 (1189)
..++|+|..|+|||||.+.+..+. .+ .. |. .+.|+ .+ .+.++.++.... ... +..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 356799999999999999886421 11 10 11 12232 21 345555553321 111 222
Q ss_pred HH-HHHHHHHHccC--ceEEEecCCCCC-ChhhHHhhccccCCC-CCCcEEEEEcCCchhhhccCCCceEeC
Q 048135 205 QV-QIQLEKAIAGQ--KFLIVLDNVWSK-NYGLWKTLKSPFMAG-TPGSKIIVTTRSVDVALTLGPIDYYNL 271 (1189)
Q Consensus 205 ~~-~~~l~~~l~~~--~~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 271 (1189)
+. .-.+.+.+-.+ .=++++|+--.. +....+.+...+... ..|..||++|.+.+.... .+.++.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22 22344555556 678888886332 112223333332221 146678899988776542 3445544
No 264
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.93 E-value=0.28 Score=47.28 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=53.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhH-HHHHHHHHHccCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQ-VQIQLEKAIAGQK 218 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~ 218 (1189)
..++|+|..|.|||||++.+..-... ..+.+|+.-.. .+..-. + -+..+ ..-.+.+.+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~~-------------~i~~~~-~-lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGSTV-------------KIGYFE-Q-LSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCeE-------------EEEEEc-c-CCHHHHHHHHHHHHHhcCC
Confidence 34579999999999999999874321 23334332100 000000 0 11122 2223455666677
Q ss_pred eEEEecCCCCC-ChhhHHhhccccCCCCCCcEEEEEcCCchhhh
Q 048135 219 FLIVLDNVWSK-NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVAL 261 (1189)
Q Consensus 219 ~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 261 (1189)
-++++|+--.. +....+.+...+... +..||++|.+.+...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 78999987431 222333333333322 246888887765543
No 265
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.92 E-value=0.56 Score=58.99 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=73.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+.++|.+|+|||++|+++++..... ++.++.. ++ ..... ......+...+.........
T Consensus 213 ~giLL~GppGtGKT~laraia~~~~~~------~i~i~~~----~i----~~~~~-----g~~~~~l~~lf~~a~~~~p~ 273 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAY------FISINGP----EI----MSKYY-----GESEERLREIFKEAEENAPS 273 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhCCe------EEEEecH----HH----hcccc-----cHHHHHHHHHHHHHHhcCCc
Confidence 446699999999999999998743211 2222211 11 11100 01112222333333455678
Q ss_pred EEEecCCCCCC-----------hhhHHhhccccCCC-CCCcEEEE-EcCCch-hhhcc----CCCceEeCCCCChhhHHH
Q 048135 220 LIVLDNVWSKN-----------YGLWKTLKSPFMAG-TPGSKIIV-TTRSVD-VALTL----GPIDYYNLELLSDDDCWS 281 (1189)
Q Consensus 220 LlvlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~iiv-Ttr~~~-v~~~~----~~~~~~~l~~L~~~~~~~ 281 (1189)
+|++||++.-. ......+...+... ..+..++| ||...+ +.... .....+.+...+.++-.+
T Consensus 274 il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~ 353 (733)
T TIGR01243 274 IIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKE 353 (733)
T ss_pred EEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHH
Confidence 99999984310 01122233222211 22333444 554332 11111 123467788888888888
Q ss_pred HHHHhhccCCCcccchhHHHHHHHHHHHhCCCh
Q 048135 282 IFEKHAFENRDASAHQNLELIHAKVVEKCKGLP 314 (1189)
Q Consensus 282 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 314 (1189)
++..+.-+ ....... ....+++.+.|.-
T Consensus 354 Il~~~~~~-~~l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 354 ILKVHTRN-MPLAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred HHHHHhcC-CCCcccc----CHHHHHHhCCCCC
Confidence 88765421 1111111 2356777777764
No 266
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.07 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCccc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEV 165 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~ 165 (1189)
+.|.|.+|+||||+|+.+.+...+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 348999999999999999986433
No 267
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.83 E-value=0.14 Score=52.53 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=43.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC---ceEEEEecCCcCHHHHHHHHHHHc----cCCCCCCCChhHHHHHHHHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN---PKAWVCVSEDFDVLKITKAILESV----TSSPSNLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~~~l 214 (1189)
|+|.|.+|+||||+|+++.......... ....+.............. .... ........+.+.+.+.++...
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHHHh
Confidence 5799999999999999988744333333 2333333332222222221 1111 111224467777777777766
Q ss_pred ccCceEE
Q 048135 215 AGQKFLI 221 (1189)
Q Consensus 215 ~~~~~Ll 221 (1189)
+++.+-+
T Consensus 81 ~g~~i~~ 87 (194)
T PF00485_consen 81 NGGSIEI 87 (194)
T ss_dssp TTSCEEE
T ss_pred CCCcccc
Confidence 6666544
No 268
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.75 E-value=0.13 Score=53.87 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=28.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFD 181 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~ 181 (1189)
+++.|+|.+|+||||+|.++..... ..-..++|++....++
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~-~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETA-GQGKKVAYIDTEGLSS 60 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEECCCCCH
Confidence 3455999999999999988875322 1123567887655554
No 269
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.75 E-value=0.15 Score=56.86 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecC-CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSE-DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
.+++.++|+.|+||||++.++......+. ...+..|+... .....+-++...+.++.+.....+..++...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 35677999999999999998876432221 23455555332 223445556556666554433333334443333 3455
Q ss_pred CceEEEecCCC
Q 048135 217 QKFLIVLDNVW 227 (1189)
Q Consensus 217 ~~~LlvlDdv~ 227 (1189)
+ =++++|..-
T Consensus 216 ~-DlVLIDTaG 225 (374)
T PRK14722 216 K-HMVLIDTIG 225 (374)
T ss_pred C-CEEEEcCCC
Confidence 4 456688884
No 270
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.72 E-value=0.39 Score=48.50 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=61.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEE---ecCCcCHHHHH------HHHHHHccCCCC-----CCCChhHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVC---VSEDFDVLKIT------KAILESVTSSPS-----NLKDLNQV 206 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~---~~~~~~~~~~~------~~i~~~l~~~~~-----~~~~~~~~ 206 (1189)
.++|+|..|.|||||++.++.... ...+.+++. +. ..+..... .++++.++.... ..-+..+.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 457999999999999999987422 134444442 21 11222211 123444433211 11122222
Q ss_pred H-HHHHHHHccCceEEEecCCCCC-ChhhHHhhccccCCC-CC-CcEEEEEcCCchhh
Q 048135 207 Q-IQLEKAIAGQKFLIVLDNVWSK-NYGLWKTLKSPFMAG-TP-GSKIIVTTRSVDVA 260 (1189)
Q Consensus 207 ~-~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~ 260 (1189)
+ -.+.+.+-..+-++++|+--.. +....+.+...+... .. |..||++|.+.+..
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 2355666677889999987431 122333333333221 12 66788888876654
No 271
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.70 E-value=0.15 Score=64.61 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=50.3
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC--CCCChhHHHHHHHHHHccCc-e
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS--NLKDLNQVQIQLEKAIAGQK-F 219 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~-~ 219 (1189)
-++|+.|+|||++|+.+.+..-.. -...+-++.++..+...+.+ -++.+.. ...... .+.+.++.++ -
T Consensus 543 lf~Gp~GvGKt~lA~~LA~~l~~~-~~~~~~~d~s~~~~~~~~~~----l~g~~~gyvg~~~~~----~l~~~~~~~p~~ 613 (821)
T CHL00095 543 LFSGPTGVGKTELTKALASYFFGS-EDAMIRLDMSEYMEKHTVSK----LIGSPPGYVGYNEGG----QLTEAVRKKPYT 613 (821)
T ss_pred EEECCCCCcHHHHHHHHHHHhcCC-ccceEEEEchhccccccHHH----hcCCCCcccCcCccc----hHHHHHHhCCCe
Confidence 389999999999999887521100 12233344443322222111 1221111 111122 2344455555 4
Q ss_pred EEEecCCCCCChhhHHhhccccCC
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMA 243 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~ 243 (1189)
+++||++...+++.++.+...+..
T Consensus 614 VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 614 VVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred EEEECChhhCCHHHHHHHHHHhcc
Confidence 888999988777888887776654
No 272
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.62 E-value=0.19 Score=51.71 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=75.3
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCcccch
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQ 297 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~ 297 (1189)
++|+-.+++-..+.-..++.-.......+|+|+.-.+-. +-..+ .-.-.+++...+++|....+++.+-..+-.- |
T Consensus 130 vvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p 207 (351)
T KOG2035|consen 130 VVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P 207 (351)
T ss_pred EEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c
Confidence 566666644334555566665555556778876433211 11111 1124688999999999999988774433222 2
Q ss_pred hHHHHHHHHHHHhCCCh-HHHHHHHhh-----hcC-C--C-ChhHHHHHHhhhccCcCC---CCChHHHHHHhHhcC
Q 048135 298 NLELIHAKVVEKCKGLP-QAAANLGGL-----LCC-K--Q-RDDEWQGILKSRIWDLSE---ESDILPVLRLSYHHL 361 (1189)
Q Consensus 298 ~~~~~~~~i~~~c~g~P-lai~~~g~~-----L~~-~--~-~~~~w~~~l~~~~~~~~~---~~~i~~~l~~sy~~L 361 (1189)
++++.+|+++++|.- -||-++-.. ... + . ..-+|+-.+.+....... ...+.++-..=|+-|
T Consensus 208 --~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 208 --KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 678999999999864 333332211 111 1 1 145798877654322111 244444444445433
No 273
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.54 E-value=0.44 Score=47.29 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=59.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccc-cC---cCc---eEEEEecCCcCH--HHHHHHHHHHccCCCCCCCChhHHHHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEV-EG---FNP---KAWVCVSEDFDV--LKITKAILESVTSSPSNLKDLNQVQIQLE 211 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~-~~---f~~---~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 211 (1189)
.++|+|..|.|||||++.+..-... .+ ++. +.+ +.+.... ..+...+... .......-+...-.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 4579999999999999999874321 11 221 222 2222211 1222222210 1111111122223455
Q ss_pred HHHccCceEEEecCCCCC-ChhhHHhhccccCCCCCCcEEEEEcCCchhhhccCCCceEeC
Q 048135 212 KAIAGQKFLIVLDNVWSK-NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGPIDYYNL 271 (1189)
Q Consensus 212 ~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 271 (1189)
+.+-.++=++++|+--.. +....+.+...+... +..||++|.+...... .++++.+
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 566667778889886331 112223333333222 3568888887765432 3344444
No 274
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.51 E-value=0.38 Score=51.15 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.5
Q ss_pred eEEccCCCcHHHHHHHHhc
Q 048135 143 TLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~ 161 (1189)
.|+|++|+|||+||..+.-
T Consensus 5 ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 3899999999999987764
No 275
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.51 E-value=0.23 Score=51.74 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|.|..|+||||+|+.+...
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 579999999999999998864
No 276
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.51 E-value=0.19 Score=53.53 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHH-ccCCC-CCCCChh---HHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILES-VTSSP-SNLKDLN---QVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~-~~~~~~~---~~~~~l~~~l 214 (1189)
+++-|+|+.|.||||+|-+++-..... -..++||+.-..++...+. ++... +..-. ....+.+ ++...+.+..
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~~aq~~-g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~ 138 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVANAQKP-GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLARSG 138 (279)
T ss_pred eEEEEecCCCcchhhHHHHHHHHhhcC-CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHHHhc
Confidence 445599999999999998876532222 4478999998888887653 33333 21100 1122222 2333333333
Q ss_pred ccCceEEEecCC
Q 048135 215 AGQKFLIVLDNV 226 (1189)
Q Consensus 215 ~~~~~LlvlDdv 226 (1189)
..+--|+|+|.|
T Consensus 139 ~~~i~LvVVDSv 150 (279)
T COG0468 139 AEKIDLLVVDSV 150 (279)
T ss_pred cCCCCEEEEecC
Confidence 334568889988
No 277
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.46 E-value=0.3 Score=48.86 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC--CcCHHHHHHHHHHHccC--CCCCC---------CChhHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE--DFDVLKITKAILESVTS--SPSNL---------KDLNQVQ 207 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~~~---------~~~~~~~ 207 (1189)
.++|+|..|.|||||.+.++.-.. ...+.+++.-.. ....... ...+.. +.... -+..+.+
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 456999999999999999987422 133444332110 0011111 111110 00000 1112222
Q ss_pred -HHHHHHHccCceEEEecCCCCC-ChhhHHhhccccCCCCCCcEEEEEcCCchhhhccCCCceEeC
Q 048135 208 -IQLEKAIAGQKFLIVLDNVWSK-NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGPIDYYNL 271 (1189)
Q Consensus 208 -~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 271 (1189)
-.+.+.+-.++-++++|+-... +....+.+...+.....+..||++|.+.+.... .++++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 2245556667789999987432 112222333222222235678888888766543 3344443
No 278
>PRK00625 shikimate kinase; Provisional
Probab=93.39 E-value=0.2 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+||.|+||||+|+.+.+.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999874
No 279
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.39 E-value=0.21 Score=57.41 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=33.4
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC-CcCHHHHHHHHHHHccC
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE-DFDVLKITKAILESVTS 195 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 195 (1189)
.++++.++|..|+||||+|..++.....+++ .++-|+... .....+.++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 3456779999999999999888764332223 233343322 11234445555666543
No 280
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.37 E-value=1 Score=56.86 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=19.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.+.++|++|+|||++|+.+.+..
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999998753
No 281
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.36 E-value=0.2 Score=58.70 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=49.3
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH--cc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI--AG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~ 216 (1189)
.++.-++|++|+||||||..|++.. +|. ++=|.+|...+...+-..|...+.... .+ .+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa---GYs-VvEINASDeRt~~~v~~kI~~avq~~s---------------~l~ads 386 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA---GYS-VVEINASDERTAPMVKEKIENAVQNHS---------------VLDADS 386 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc---Cce-EEEecccccccHHHHHHHHHHHHhhcc---------------ccccCC
Confidence 3455699999999999999888732 254 455667766666555555544433211 12 14
Q ss_pred CceEEEecCCCCCChhhHHhh
Q 048135 217 QKFLIVLDNVWSKNYGLWKTL 237 (1189)
Q Consensus 217 ~~~LlvlDdv~~~~~~~~~~l 237 (1189)
++.-+|+|.++-......+.+
T Consensus 387 rP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 387 RPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred CcceEEEecccCCcHHHHHHH
Confidence 667799999865443333333
No 282
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.36 E-value=0.04 Score=57.98 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=17.2
Q ss_pred EEccCCCcHHHHHHHHhcCcc
Q 048135 144 LVGMGGIGKTTLARLVYNDKE 164 (1189)
Q Consensus 144 I~G~gG~GKTtla~~v~~~~~ 164 (1189)
|+|++|+||||+++.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999998876443
No 283
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.35 E-value=0.18 Score=50.63 Aligned_cols=21 Identities=43% Similarity=0.455 Sum_probs=17.8
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.++|++|+||||+++.+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999888764
No 284
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.16 Score=59.13 Aligned_cols=68 Identities=25% Similarity=0.231 Sum_probs=42.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCC--cCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSED--FDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
+-|.|..|+|||+||+++++... +. .-++.+|+.+.- .....+++.+ ...+.+.+...+
T Consensus 434 Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~~~P 495 (952)
T KOG0735|consen 434 ILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALWYAP 495 (952)
T ss_pred EEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHhhCC
Confidence 45899999999999999998544 22 333444544322 1222222221 123345567789
Q ss_pred eEEEecCCC
Q 048135 219 FLIVLDNVW 227 (1189)
Q Consensus 219 ~LlvlDdv~ 227 (1189)
-+|||||++
T Consensus 496 SiIvLDdld 504 (952)
T KOG0735|consen 496 SIIVLDDLD 504 (952)
T ss_pred cEEEEcchh
Confidence 999999994
No 285
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.25 E-value=0.27 Score=54.74 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=36.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-----cCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-----FNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
++-|+|.+|+|||++|.++........ =..++||+....|+...+. ++++.++
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 344999999999999988764322211 1368899998888877664 4444443
No 286
>PRK14974 cell division protein FtsY; Provisional
Probab=93.23 E-value=0.26 Score=54.45 Aligned_cols=88 Identities=19% Similarity=0.149 Sum_probs=45.4
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc--CHHHHHHHHHHHccCCCC---CCCChhHH-HHHHHH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF--DVLKITKAILESVTSSPS---NLKDLNQV-QIQLEK 212 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l~~ 212 (1189)
++++.++|+.|+||||++..++......++. ++.+.. ..+ ...+.++.....++.+.. ...+.... ...++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 4567899999999999887776543222243 333432 222 233344555666554321 11222222 223332
Q ss_pred HHccCceEEEecCCCC
Q 048135 213 AIAGQKFLIVLDNVWS 228 (1189)
Q Consensus 213 ~l~~~~~LlvlDdv~~ 228 (1189)
.-....=++++|-.-.
T Consensus 218 ~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 218 AKARGIDVVLIDTAGR 233 (336)
T ss_pred HHhCCCCEEEEECCCc
Confidence 2222233888898744
No 287
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.21 E-value=0.15 Score=64.43 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=48.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCC---CCChhHHHHHHHHHHccCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSN---LKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~~~ 218 (1189)
+.++|+.|+|||.+|+++....- ......+-++++...+.. . ...+.+.... ......+...+++ ...
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~-~~~~~~~~~dmse~~~~~----~-~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~ 669 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLY-GGEQNLITINMSEFQEAH----T-VSRLKGSPPGYVGYGEGGVLTEAVRR---KPY 669 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh-CCCcceEEEeHHHhhhhh----h-hccccCCCCCcccccccchHHHHHHh---CCC
Confidence 45899999999999988765210 111112222222221111 1 1122222111 1111223333332 445
Q ss_pred eEEEecCCCCCChhhHHhhccccCCC
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPFMAG 244 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l~~~ 244 (1189)
-+|+||++...+++.++.+...+..+
T Consensus 670 svvllDEieka~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 670 SVVLLDEVEKAHPDVLELFYQVFDKG 695 (852)
T ss_pred cEEEEechhhcCHHHHHHHHHHhhcc
Confidence 69999999877777777776665543
No 288
>PRK08233 hypothetical protein; Provisional
Probab=93.21 E-value=0.17 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.++.|.|.+|+||||+|+.+....
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 356799999999999999998643
No 289
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=1.6 Score=49.42 Aligned_cols=125 Identities=20% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH----c
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI----A 215 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~ 215 (1189)
+-|-++|++|.|||-||++|.....+..| ...+..|+..- +....+++|..+ +
T Consensus 338 KGVLLvGPPGTGKTlLARAvAGEA~VPFF-----~~sGSEFdEm~------------------VGvGArRVRdLF~aAk~ 394 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLARAVAGEAGVPFF-----YASGSEFDEMF------------------VGVGARRVRDLFAAAKA 394 (752)
T ss_pred CceEEeCCCCCchhHHHHHhhcccCCCeE-----eccccchhhhh------------------hcccHHHHHHHHHHHHh
Confidence 44569999999999999999987655532 22333443221 112233344333 3
Q ss_pred cCceEEEecCCCCCC-----------hhhHHhhccccCCCC--CCcEEEEEcCCchhhhcc----C-CCceEeCCCCChh
Q 048135 216 GQKFLIVLDNVWSKN-----------YGLWKTLKSPFMAGT--PGSKIIVTTRSVDVALTL----G-PIDYYNLELLSDD 277 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs~iivTtr~~~v~~~~----~-~~~~~~l~~L~~~ 277 (1189)
.-++.|.+|.++.-. ....+++...+..+. .|--||-.|..++..+.. + .+..+.|..-+-.
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVR 474 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcc
Confidence 457899999885411 022344555555443 354444455544443322 1 1234455544444
Q ss_pred hHHHHHHHhh
Q 048135 278 DCWSIFEKHA 287 (1189)
Q Consensus 278 ~~~~lf~~~a 287 (1189)
--.++|..+.
T Consensus 475 GR~eIL~~yl 484 (752)
T KOG0734|consen 475 GRTEILKLYL 484 (752)
T ss_pred cHHHHHHHHH
Confidence 4455555554
No 290
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.21 E-value=0.22 Score=50.52 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|++|+||||+|+.+...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999864
No 291
>PHA02244 ATPase-like protein
Probab=93.21 E-value=0.21 Score=55.06 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.8
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+-|+|..|+|||++|+++...
T Consensus 122 VLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999874
No 292
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.15 E-value=0.16 Score=58.22 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+-|.|.+|+|||++|+.+...
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHH
Confidence 4569999999999999999864
No 293
>PRK06217 hypothetical protein; Validated
Probab=93.14 E-value=0.22 Score=50.36 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=23.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCc--CceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGF--NPKAW 173 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f--~~~~w 173 (1189)
+.|.|.+|+||||+|+++........| |..+|
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~ 37 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTDDYFW 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcCceee
Confidence 469999999999999999875443332 44555
No 294
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.12 E-value=0.19 Score=56.61 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=19.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+++.|+|.+|+||||+|..+...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999888753
No 295
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.11 E-value=0.072 Score=55.58 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|++|+||||+|+.+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999998764
No 296
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.11 E-value=1.2 Score=52.44 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcCcc-------ccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKE-------VEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA 213 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~-------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 213 (1189)
.+-|.|.+|.|||..+..|.+... ...|+ .+.|..-+-....+++..|..++.+... ......+.+..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~---~~~~al~~L~~~ 499 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERV---TWDAALEALNFR 499 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCcc---cHHHHHHHHHHh
Confidence 456999999999999999987432 23355 3345555556789999999999886542 334444556665
Q ss_pred Hc-----cCceEEEecCCC---CCChhhHHhhccccCC-CCCCcEEEEEc
Q 048135 214 IA-----GQKFLIVLDNVW---SKNYGLWKTLKSPFMA-GTPGSKIIVTT 254 (1189)
Q Consensus 214 l~-----~~~~LlvlDdv~---~~~~~~~~~l~~~l~~-~~~gs~iivTt 254 (1189)
.. .+..++++|+++ ...++..-.| +.| ..++||++|.+
T Consensus 500 f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 500 FTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVIA 546 (767)
T ss_pred hccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEEE
Confidence 54 456788888873 2222222222 222 35788877654
No 297
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.81 Score=46.69 Aligned_cols=23 Identities=43% Similarity=0.430 Sum_probs=20.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.-+-.+|++|.|||-.|++|.|+
T Consensus 212 kgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred CceEEeCCCCCchhHHHHHHhcc
Confidence 34568999999999999999995
No 298
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.03 E-value=0.054 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.0
Q ss_pred eEEccCCCcHHHHHHHHhcC
Q 048135 143 TLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~ 162 (1189)
.|.|+.|+||||+|+++...
T Consensus 2 ~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 58999999999999998874
No 299
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.03 E-value=0.12 Score=56.53 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcCcc
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYNDKE 164 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~~~ 164 (1189)
.++.+.|||++|.|||.+|++++++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 345677999999999999999998643
No 300
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.01 E-value=0.22 Score=54.99 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=52.0
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-c
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI-A 215 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 215 (1189)
..+++.|+|+.|+||||++..+......++ ..+.+|+..... ...+-++...+.++.+.....+..++...+...- .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 356678999999999999988875432222 235566654322 2344455555555543323345556655554332 1
Q ss_pred cCceEEEecCCCC
Q 048135 216 GQKFLIVLDNVWS 228 (1189)
Q Consensus 216 ~~~~LlvlDdv~~ 228 (1189)
+..=++++|-.-.
T Consensus 284 ~~~D~VLIDTAGr 296 (407)
T PRK12726 284 NCVDHILIDTVGR 296 (407)
T ss_pred CCCCEEEEECCCC
Confidence 3445788887733
No 301
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.00 E-value=0.056 Score=30.12 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=3.9
Q ss_pred ccEEecccccccc
Q 048135 549 LRYLDMSNTAISS 561 (1189)
Q Consensus 549 L~~L~L~~~~i~~ 561 (1189)
|+.|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3334444433333
No 302
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.99 E-value=0.34 Score=50.57 Aligned_cols=142 Identities=20% Similarity=0.140 Sum_probs=78.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC-----CcCHHHHHHHHHHHccCCCC------CCCChhHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE-----DFDVLKITKAILESVTSSPS------NLKDLNQVQI 208 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~ 208 (1189)
..++|+|-.|.||||+|+.+..=.. --.+.++..-.+ .....+...++++.++.... ..-+-.+.|+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 4567999999999999999986221 122333332111 22334455666666664432 1122334443
Q ss_pred -HHHHHHccCceEEEecCCCCCCh----hhHHhhccccCCCCCCcEEEEEcCCchhhhccCCC-ce-EeCCCCChhhHHH
Q 048135 209 -QLEKAIAGQKFLIVLDNVWSKNY----GLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGPI-DY-YNLELLSDDDCWS 281 (1189)
Q Consensus 209 -~l~~~l~~~~~LlvlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~-~~-~~l~~L~~~~~~~ 281 (1189)
.+.+.|.-+.=++|.|.--+.-. .+--.+...+.. ..|-..+..|-+-.++..+... .+ |.-+-.+..+..+
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 36677888999999998633211 111112222222 2366788888888887776543 12 2223334455555
Q ss_pred HHH
Q 048135 282 IFE 284 (1189)
Q Consensus 282 lf~ 284 (1189)
+|.
T Consensus 197 ~~~ 199 (268)
T COG4608 197 VFS 199 (268)
T ss_pred Hhh
Confidence 664
No 303
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.98 E-value=0.67 Score=49.45 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=75.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEE-EecCCc-----CHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWV-CVSEDF-----DVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIA 215 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv-~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 215 (1189)
+.|+|+.|.|||++...+..+ .+.|...+.+ ...... .+..+.+++..++........+..+...++-..|+
T Consensus 52 viiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~ 129 (408)
T KOG2228|consen 52 VIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALK 129 (408)
T ss_pred eEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHh
Confidence 459999999999998877776 3335444333 232222 23344445444444333223333444445555553
Q ss_pred c------CceEEEecCCCCCChh----hHHhhcccc-CCCCCCcEEEEEcCCch-------hhhccCCCceEeCCCCChh
Q 048135 216 G------QKFLIVLDNVWSKNYG----LWKTLKSPF-MAGTPGSKIIVTTRSVD-------VALTLGPIDYYNLELLSDD 277 (1189)
Q Consensus 216 ~------~~~LlvlDdv~~~~~~----~~~~l~~~l-~~~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~ 277 (1189)
. -++.+|+|..+--... ..-.+.+.- ....|-+-|-+|||-.- |-....-..++-++.++-+
T Consensus 130 ~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~ 209 (408)
T KOG2228|consen 130 KGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLG 209 (408)
T ss_pred cCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChH
Confidence 2 3588888887432111 111111111 12345667778999542 2222222335666667777
Q ss_pred hHHHHHHHhh
Q 048135 278 DCWSIFEKHA 287 (1189)
Q Consensus 278 ~~~~lf~~~a 287 (1189)
|..+++++-.
T Consensus 210 ~yv~l~r~ll 219 (408)
T KOG2228|consen 210 DYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 304
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.96 E-value=0.74 Score=58.44 Aligned_cols=131 Identities=14% Similarity=0.158 Sum_probs=63.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCcc---ccC--cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhH-HHHHHHHHH-
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKE---VEG--FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQ-VQIQLEKAI- 214 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~---~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l- 214 (1189)
+.++|.+|+|||++|+.+..... +.. ....+|. + ++..+... . ....+.++ +...+.+.-
T Consensus 202 ~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~-l----~l~~l~ag-------~-~~~g~~e~~lk~~~~~~~~ 268 (857)
T PRK10865 202 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA-L----DMGALVAG-------A-KYRGEFEERLKGVLNDLAK 268 (857)
T ss_pred eEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE-E----ehhhhhhc-------c-chhhhhHHHHHHHHHHHHH
Confidence 45999999999999998876431 111 1233322 1 11111100 0 00011222 222222211
Q ss_pred ccCceEEEecCCCCCC--------hhhHHhhccccCCCCCCcEEEEEcCCchhhhccC-------CCceEeCCCCChhhH
Q 048135 215 AGQKFLIVLDNVWSKN--------YGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLG-------PIDYYNLELLSDDDC 279 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~-------~~~~~~l~~L~~~~~ 279 (1189)
.+++.+|++|++..-. .+.-+.+...+..+ .-++|-+|...+...... -...+.+...+.++.
T Consensus 269 ~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~ 346 (857)
T PRK10865 269 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 346 (857)
T ss_pred cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHH
Confidence 2568999999985311 01112233223222 345665555544322111 123566777788888
Q ss_pred HHHHHHhh
Q 048135 280 WSIFEKHA 287 (1189)
Q Consensus 280 ~~lf~~~a 287 (1189)
.+++....
T Consensus 347 ~~iL~~l~ 354 (857)
T PRK10865 347 IAILRGLK 354 (857)
T ss_pred HHHHHHHh
Confidence 88876543
No 305
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.95 E-value=0.42 Score=47.73 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=53.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEE------ecCCcCHHHHHHHHHHHccCCCCCCCChhH-HHHHHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVC------VSEDFDVLKITKAILESVTSSPSNLKDLNQ-VQIQLEKA 213 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~ 213 (1189)
.++|+|..|.|||||++.+..-... ..+.+++. +.+... -+..+ ..-.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~lara 85 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIAAA 85 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHHHH
Confidence 4679999999999999998863221 22333221 111111 11122 22335556
Q ss_pred HccCceEEEecCCCCC-ChhhHHhhccccCCC-CC-CcEEEEEcCCchhhhc
Q 048135 214 IAGQKFLIVLDNVWSK-NYGLWKTLKSPFMAG-TP-GSKIIVTTRSVDVALT 262 (1189)
Q Consensus 214 l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~~ 262 (1189)
+..++-++++|+--.. +....+.+...+... .. +..||++|.+......
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 6677789999987432 112222222222211 12 2567778777665443
No 306
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.89 E-value=0.23 Score=57.38 Aligned_cols=87 Identities=16% Similarity=0.079 Sum_probs=44.3
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecC-CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSE-DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
.+++.|+|.+|+||||++..+......+. ...+..++... .....+.++.....++.......+..++...+++ +.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~~ 428 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LRD 428 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hcc
Confidence 45678999999999999988765322222 23344554422 1112222233223332222222333444444433 333
Q ss_pred CceEEEecCCC
Q 048135 217 QKFLIVLDNVW 227 (1189)
Q Consensus 217 ~~~LlvlDdv~ 227 (1189)
.=+|++|..-
T Consensus 429 -~DLVLIDTaG 438 (559)
T PRK12727 429 -YKLVLIDTAG 438 (559)
T ss_pred -CCEEEecCCC
Confidence 4578888873
No 307
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.87 E-value=0.32 Score=47.67 Aligned_cols=118 Identities=13% Similarity=0.005 Sum_probs=58.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceE--EEEecCCcCHHHHHHHHHHHc---cCCC-CCCCC-------hhHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKA--WVCVSEDFDVLKITKAILESV---TSSP-SNLKD-------LNQVQ 207 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~~~l---~~~~-~~~~~-------~~~~~ 207 (1189)
.+-|++-.|.||||.|..+.-+..-.++...+ |+.-.........++...-.+ +... ....+ ..+..
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 34588889999999996665432222233221 333232234444443321000 0000 00011 12223
Q ss_pred HHHHHHHccCce-EEEecCCCC---CChhhHHhhccccCCCCCCcEEEEEcCCch
Q 048135 208 IQLEKAIAGQKF-LIVLDNVWS---KNYGLWKTLKSPFMAGTPGSKIIVTTRSVD 258 (1189)
Q Consensus 208 ~~l~~~l~~~~~-LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 258 (1189)
...++.+...+| ++|||.+-. -..-..+.+...+....++..||+|-|+..
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 344555555555 999999821 111223345555555556779999999863
No 308
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.86 E-value=1.1 Score=45.99 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=36.6
Q ss_pred HHHHHHccCceEEEecCC----CCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhccCCCceEeCC
Q 048135 209 QLEKAIAGQKFLIVLDNV----WSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGPIDYYNLE 272 (1189)
Q Consensus 209 ~l~~~l~~~~~LlvlDdv----~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~ 272 (1189)
.+.+.|-..+-+|+.|+= +.+.....-.+...+. ...|..||+.|-+..+|..+. .++.++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~d--r~i~l~ 216 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYAD--RVIELK 216 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhCC--EEEEEe
Confidence 467778888889999863 2222111112222221 134778999999999998654 444443
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.86 E-value=0.43 Score=53.92 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=50.6
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcCcccc---CcCceEEEEecCCcC--HHHHHHHHHHHccCCCCCCCChhHHHHHHHH
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYNDKEVE---GFNPKAWVCVSEDFD--VLKITKAILESVTSSPSNLKDLNQVQIQLEK 212 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~~~~~---~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 212 (1189)
.++++.++|..|+||||.+..+....... .=..+..|++. .+. ....++...+.++.+.....+.+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 34677899999999999998887543221 11234445544 332 2233555555555443333444555555544
Q ss_pred HHccCceEEEecCCCC
Q 048135 213 AIAGQKFLIVLDNVWS 228 (1189)
Q Consensus 213 ~l~~~~~LlvlDdv~~ 228 (1189)
. .+.-++++|..-.
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3456888898843
No 310
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.18 Score=47.65 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCC
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSS 196 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 196 (1189)
+++|-|.+|.||||+|+.+.++...+ . .+.-.++++++++.+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~---~---------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK---L---------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc---e---------eeccHHHHHHHHHcCCC
Confidence 36799999999999999999853322 1 13345778888887644
No 311
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=92.84 E-value=0.9 Score=56.79 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.++|++|+||||+|+.+...
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999863
No 312
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.79 E-value=0.9 Score=47.99 Aligned_cols=130 Identities=15% Similarity=0.233 Sum_probs=80.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEE-EEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAW-VCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
.+.|+|+.|+|||+-++.+++.. ..+| +..+..+....++..+......... ....+....+..++++..-
T Consensus 96 l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~~~ 167 (297)
T COG2842 96 LVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRDTVR 167 (297)
T ss_pred eEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHccCcc
Confidence 45699999999999999998742 2344 3566666766666666665554332 2344555666677788889
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhccCCCceEeCCCCChhhHHHHHHHhhccC
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGPIDYYNLELLSDDDCWSIFEKHAFEN 290 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 290 (1189)
+++.|....-....++.++......+-| ++.. +.......-.=+..+...+|.+.+|+.
T Consensus 168 ~iivDEA~~L~~~ale~lr~i~d~~Gi~--~vLv----------G~prL~~~l~~~~~~~~rl~srv~v~~ 226 (297)
T COG2842 168 LIIVDEADRLPYRALEELRRIHDKTGIG--VVLV----------GMPRLFKVLRRPEDELSRLYSRVRVGK 226 (297)
T ss_pred eeeeehhhccChHHHHHHHHHHHhhCce--EEEe----------cChHHHhccccchHHHHHHHHHhhhHh
Confidence 9999999776667777776655443333 2211 111111111224566677777777654
No 313
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.77 E-value=0.15 Score=52.92 Aligned_cols=58 Identities=22% Similarity=0.184 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCc
Q 048135 100 NVGMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 100 ~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.+.+.++|..+++.++.+.+.+..-+... .......+.|+|.+|+|||||...+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 8 RRLIRERIAKLRRELEKVKKQRELQRRRR------KRSGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhh------hhcCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 35667788888888888777655433210 01122356799999999999999988753
No 314
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.72 E-value=0.42 Score=55.09 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCcc-ccCcCceEEEEecCCc-CHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKE-VEGFNPKAWVCVSEDF-DVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~-~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
.+++.++|++|+||||++..+..... ...-..+..|+..... ...+.++...+.++.+.....+.+++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 35678999999999999877765332 1222345566553321 11222333333343332223344455555543 33
Q ss_pred CceEEEecCC
Q 048135 217 QKFLIVLDNV 226 (1189)
Q Consensus 217 ~~~LlvlDdv 226 (1189)
..=++++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3457888866
No 315
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.71 E-value=0.22 Score=48.37 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.3
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+||||+|+.+...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999998764
No 316
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.71 E-value=0.48 Score=46.86 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=19.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+|-|+|-.|+||+.+|+.+++.
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHh
Confidence 34569999999999999999984
No 317
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.63 E-value=0.24 Score=50.81 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=56.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHH-HHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVL-KITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+.|+|..|.||||++..+...... .....++. +..+.... .-...+..+-. . ..+.......++..++...=.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~-~~~~~i~t-~e~~~E~~~~~~~~~i~q~~---v-g~~~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK-NKTHHILT-IEDPIEFVHESKRSLINQRE---V-GLDTLSFENALKAALRQDPDV 77 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh-cCCcEEEE-EcCCccccccCccceeeecc---c-CCCccCHHHHHHHHhcCCcCE
Confidence 459999999999999887653211 13334433 22221110 00001111100 0 111233556677778777889
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhh
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVA 260 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 260 (1189)
+++|++.+ .+.+....... ..|..++.|+-..++.
T Consensus 78 ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 78 ILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 99999943 34444433322 2455677777765554
No 318
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.63 E-value=0.34 Score=53.80 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=37.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccc---cC--cCceEEEEecCCcCHHHHHHHHHHHccC
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEV---EG--FNPKAWVCVSEDFDVLKITKAILESVTS 195 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~---~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 195 (1189)
.-|+|.+|+|||++|..++-.... .+ -..++||+....|...++ .+|++.++.
T Consensus 126 ~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 126 TEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred EEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 349999999999999876632221 11 236899999998888776 455666543
No 319
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.61 E-value=0.35 Score=49.70 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-cCceEEE-------EecCCcCHHHH--HHHHHHHccCCCCC-C--------C
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWV-------CVSEDFDVLKI--TKAILESVTSSPSN-L--------K 201 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv-------~~~~~~~~~~~--~~~i~~~l~~~~~~-~--------~ 201 (1189)
.+.++||+|.||||..+.++.....++ -..++=+ ......|+++. .++.+++.+....+ + .
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~t 100 (366)
T KOG1532|consen 21 IILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFAT 100 (366)
T ss_pred EEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHHH
Confidence 445899999999999999887543332 1112111 11223344443 46667766554432 1 2
Q ss_pred ChhHHHHHHHHHHccCceEEEecCCCCCChhhHHhhccccCCCCCCc
Q 048135 202 DLNQVQIQLEKAIAGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGS 248 (1189)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs 248 (1189)
..++....+.++-..-+|.|| |-- .+ ...+.|..+|+
T Consensus 101 k~dqv~~~iek~~~~~~~~li-DTP-----GQ----IE~FtWSAsGs 137 (366)
T KOG1532|consen 101 KFDQVIELIEKRAEEFDYVLI-DTP-----GQ----IEAFTWSASGS 137 (366)
T ss_pred HHHHHHHHHHHhhcccCEEEE-cCC-----Cc----eEEEEecCCcc
Confidence 345555556555444444443 332 22 23455666776
No 320
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.59 E-value=0.31 Score=49.26 Aligned_cols=92 Identities=26% Similarity=0.404 Sum_probs=53.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
|-+||.-|+|||.|++++.+....++-. -|.|.+. +..++..+.+.++. +.+||.|
T Consensus 88 VLLwGaRGtGKSSLVKA~~~e~~~~glr---LVEV~k~-------------------dl~~Lp~l~~~Lr~--~~~kFIl 143 (287)
T COG2607 88 VLLWGARGTGKSSLVKALLNEYADEGLR---LVEVDKE-------------------DLATLPDLVELLRA--RPEKFIL 143 (287)
T ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCe---EEEEcHH-------------------HHhhHHHHHHHHhc--CCceEEE
Confidence 4589999999999999998853322111 2333221 11222333333332 4679999
Q ss_pred EecCCCCC-ChhhHHhhccccCCC---CCCcEEEEEcCCc
Q 048135 222 VLDNVWSK-NYGLWKTLKSPFMAG---TPGSKIIVTTRSV 257 (1189)
Q Consensus 222 vlDdv~~~-~~~~~~~l~~~l~~~---~~gs~iivTtr~~ 257 (1189)
..||+.-+ +.+.+..++..+..+ .+...++..|.++
T Consensus 144 FcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 144 FCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred EecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 99999433 335667777766543 2344455544443
No 321
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.56 E-value=0.44 Score=44.87 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=46.8
Q ss_pred CCCCCccceEeeccCCCCcccCCCCCC--CCcCeEEEeccCCCccccc-cccCCCccccccccCCCCCcceeeccCCCcc
Q 048135 1012 PINLECLHQIYIWDCSSFTSFPKGGLP--NTLSRISIGKCENLVALPD-RMHNLSSLQELEICFPTSLTTLTIEDFNLYK 1088 (1189)
Q Consensus 1012 ~~~l~~L~~L~l~~~~~l~~~p~~~~~--~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~ 1088 (1189)
|.++++|+.+.+.. .++.++...+. ++|+.+.+.+ .+..++. .+.++.+|+.+.+ .+ .+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~-----------~~--~~~ 70 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITF-----------PN--NLK 70 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEE-----------TS--TT-
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccc-----------cc--ccc
Confidence 45556666666653 35555544332 3566666655 2444442 3344444444444 21 344
Q ss_pred cccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCcc
Q 048135 1089 PLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSL 1153 (1189)
Q Consensus 1089 ~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L 1153 (1189)
.++...+..+++|+.+.+.. .+..++... +... .|+.+.+.+ .+..++...|.++++|
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~--f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPS--NITEIGSSS--FSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EE-TTTTTT-TTECEEEETT--T-BEEHTTT--TTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccccccccccccccccCc--cccEEchhh--hcCC-CceEEEECC--CccEECCccccccccC
Confidence 44555677777888888765 255555443 2333 666666643 3444443445544444
No 322
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.55 E-value=5.2 Score=46.68 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=34.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
.+.|.|.+|+|||++|..+..+...+.-..++|++ -..+..++...++....
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS--lEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFS--LEMSAEQLGERLLASKS 247 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE--CCCCHHHHHHHHHHHHc
Confidence 45688999999999998887543222222355654 34567777777776543
No 323
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.52 E-value=0.29 Score=54.08 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccc---cC--cCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEV---EG--FNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~---~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
++.|+|.+|+||||+|..++..... .+ -..++||+....+...++ .++++.++
T Consensus 98 i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 98 ITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 3459999999999999887642211 11 235789988887777763 44555543
No 324
>PRK10867 signal recognition particle protein; Provisional
Probab=92.50 E-value=0.23 Score=56.86 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=18.7
Q ss_pred CCCCeEEccCCCcHHHHHHHHhc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+.++.++|.+|+||||+|..++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 45677999999999998766654
No 325
>PRK08760 replicative DNA helicase; Provisional
Probab=92.49 E-value=3.9 Score=48.12 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=31.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESV 193 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l 193 (1189)
.+.|-|.+|+|||++|..+......+. . .++++ |-.-+..++...++...
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~-~V~~f--SlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKK-GVAVF--SMEMSASQLAMRLISSN 281 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCC-ceEEE--eccCCHHHHHHHHHHhh
Confidence 456889999999999988775432222 3 23333 34445566666666543
No 326
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.48 E-value=0.13 Score=52.63 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=50.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-----
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI----- 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----- 214 (1189)
+...|.|.+|.||||+++.+.......++ .+.+.......... +.+..+.. ...+. ..+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~--~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~---~~l~~~~~~~~~ 86 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGK--RVIGLAPTNKAAKE----LREKTGIE---AQTIH---SFLYRIPNGDDE 86 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSHHHHHH----HHHHHTS----EEEHH---HHTTEECCEECC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCC--eEEEECCcHHHHHH----HHHhhCcc---hhhHH---HHHhcCCccccc
Confidence 34458899999999999887754333322 23333322222222 22222211 11111 0000000
Q ss_pred ----ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcC
Q 048135 215 ----AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTR 255 (1189)
Q Consensus 215 ----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 255 (1189)
..++-++|+|++..-+...+..+...... .|+|+|+.=-
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 12345999999977766777777766654 4778886543
No 327
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.45 E-value=1.2 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.+.|.|..|+||||+|+++...
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHH
Confidence 34669999999999999999874
No 328
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.44 E-value=0.17 Score=51.19 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=41.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcC-HHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFD-VLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
.+++|.|.+|+||||+|+.++...... .+.-++....+. ....-.+--...........+.+-+.+.|...+++++
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~---~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVE---KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcC---cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 467899999999999999998743221 111222211111 1111000011111122345677777888888888887
No 329
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.42 E-value=0.17 Score=46.91 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=37.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
+-|.|.+|+||||+|.++..... | -|+++|+-.....+....-++. .+..-+.+.+.+.|...+.+
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~---~---~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTG---L---EYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhC---C---ceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhc
Confidence 45899999999999999985322 2 3677765433322222211111 12234555555666555544
No 330
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.35 E-value=0.0089 Score=59.31 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=76.2
Q ss_pred CcccC-ccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCCcccccCCCCC
Q 048135 536 IIELP-NSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDVHLIKEMPLGM 614 (1189)
Q Consensus 536 ~~~lp-~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 614 (1189)
+.++| ..|.....-+.||++.|.+..+-..++.++.|..||++.| .+..+|.+.+.+..++++++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44555 4567788999999999999999889999999999999987 789999999999999999988776 88899999
Q ss_pred CCCCCCceeC
Q 048135 615 EEWKCLQTLS 624 (1189)
Q Consensus 615 ~~L~~L~~L~ 624 (1189)
++++.++.++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9998888774
No 331
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.34 E-value=0.35 Score=51.78 Aligned_cols=108 Identities=19% Similarity=0.096 Sum_probs=57.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEE---ecCCcCHHHHHHHHHHHccCCCC-------CC-CChhHHHHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVC---VSEDFDVLKITKAILESVTSSPS-------NL-KDLNQVQIQL 210 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~~~~-------~~-~~~~~~~~~l 210 (1189)
+.|+|..|.||||+.+.+..... .....+++. +....+. .++......-.. +. .+... ...+
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~~~ 186 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCPK-AEGM 186 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccchH-HHHH
Confidence 45999999999999999987432 123344431 2111112 223222211100 00 11111 1223
Q ss_pred HHHHc-cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhh
Q 048135 211 EKAIA-GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVAL 261 (1189)
Q Consensus 211 ~~~l~-~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 261 (1189)
...+. ..+=++++|.+- ..+.+..+...+. .|..||+||-+..+..
T Consensus 187 ~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 33332 577899999984 3455666655542 4778999998766643
No 332
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.28 E-value=0.28 Score=56.15 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=42.9
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecC-CcCHHHHHHHHHHHccCCCC---CCCChhHHHHHHHHH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSE-DFDVLKITKAILESVTSSPS---NLKDLNQVQIQLEKA 213 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 213 (1189)
+.++.++|.+|+||||+|..++.....+. + .++-|+... .....+.++......+.+.. ...+..++.....+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45567999999999999877765322111 2 233343321 11223333444444443321 112333443333333
Q ss_pred HccCce-EEEecCC
Q 048135 214 IAGQKF-LIVLDNV 226 (1189)
Q Consensus 214 l~~~~~-LlvlDdv 226 (1189)
...+.| ++|+|-.
T Consensus 178 ~~~~~~DvVIIDTa 191 (428)
T TIGR00959 178 AKENGFDVVIVDTA 191 (428)
T ss_pred HHhcCCCEEEEeCC
Confidence 434445 6777766
No 333
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=2.6 Score=50.46 Aligned_cols=129 Identities=21% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+-++|++|.|||.||+++.+..... | +.+... +++.... ......+........+.....
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~-f-----i~v~~~--------~l~sk~v-----Gesek~ir~~F~~A~~~~p~i 338 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSR-F-----ISVKGS--------ELLSKWV-----GESEKNIRELFEKARKLAPSI 338 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCe-E-----EEeeCH--------HHhcccc-----chHHHHHHHHHHHHHcCCCcE
Confidence 45599999999999999999843322 2 222211 1111111 011122233334444678899
Q ss_pred EEecCCCCC------C-----hhhHHhhccccCCC--CCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHHH
Q 048135 221 IVLDNVWSK------N-----YGLWKTLKSPFMAG--TPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 221 lvlDdv~~~------~-----~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~l 282 (1189)
|.+|+++.- . .....++...+... ..+..||-||-..+..... .-+..+.+..-+.++..+.
T Consensus 339 iFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i 418 (494)
T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEI 418 (494)
T ss_pred EEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHH
Confidence 999998430 0 01233343333322 2333455566555443321 2245788999999999999
Q ss_pred HHHhhc
Q 048135 283 FEKHAF 288 (1189)
Q Consensus 283 f~~~a~ 288 (1189)
|..+.-
T Consensus 419 ~~~~~~ 424 (494)
T COG0464 419 FKIHLR 424 (494)
T ss_pred HHHHhc
Confidence 999874
No 334
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.27 E-value=1.1 Score=55.21 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=69.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+-+.|+|++|.|||++|+.+....... | +.+..+ .+.. ...+ .....+...+...-...+.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~-f---~~is~~------~~~~----~~~g-----~~~~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP-F---FTISGS------DFVE----MFVG-----VGASRVRDMFEQAKKAAPC 246 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC-E---EEEehH------HhHH----hhhc-----ccHHHHHHHHHHHHhcCCc
Confidence 346799999999999999998743322 2 122211 1111 1000 1112222333333345678
Q ss_pred EEEecCCCCCC----------hhhH----HhhccccCCC--CCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhh
Q 048135 220 LIVLDNVWSKN----------YGLW----KTLKSPFMAG--TPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDD 278 (1189)
Q Consensus 220 LlvlDdv~~~~----------~~~~----~~l~~~l~~~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~ 278 (1189)
+|++|+++.-. ...+ ..+...+... ..+.-||.||...+..... ..+..+.+...+.++
T Consensus 247 IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 99999985410 0112 2222222211 2344555677766543321 123567888888888
Q ss_pred HHHHHHHhhc
Q 048135 279 CWSIFEKHAF 288 (1189)
Q Consensus 279 ~~~lf~~~a~ 288 (1189)
-.+++..+.-
T Consensus 327 R~~Il~~~~~ 336 (644)
T PRK10733 327 REQILKVHMR 336 (644)
T ss_pred HHHHHHHHhh
Confidence 8888887753
No 335
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.23 E-value=0.36 Score=53.30 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.2
Q ss_pred eEEccCCCcHHHHHHHHhcCc
Q 048135 143 TLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~ 163 (1189)
++.|+.|.||||+|+.+.+..
T Consensus 3 ~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999888644
No 336
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.19 E-value=0.45 Score=52.93 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=36.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCcccc---C--cCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVE---G--FNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~---~--f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
++-|+|.+|+||||+|.+++...... + =..++||+....|+..++. ++++.++
T Consensus 97 i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 97 ITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 34599999999999998876543221 1 1368899998888877654 4455443
No 337
>PRK08506 replicative DNA helicase; Provisional
Probab=92.18 E-value=6 Score=46.65 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=34.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
.+.|-|.+|+|||++|..+..+...++. .++++ |-.-+..++...++....
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~-~V~~f--SlEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDK-GVAFF--SLEMPAEQLMLRMLSAKT 244 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCC-cEEEE--eCcCCHHHHHHHHHHHhc
Confidence 4558899999999999888764321213 34444 444677788877776654
No 338
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.14 E-value=0.1 Score=42.72 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|..|+||||+|+++.+.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999988875
No 339
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.10 E-value=0.53 Score=53.77 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=46.3
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCC------CCCCChhH-----HHHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSP------SNLKDLNQ-----VQIQL 210 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~-----~~~~l 210 (1189)
+.|+|..|+|||||++.+...... ...++|+.-.+..++.++....+....... .+...... ....+
T Consensus 168 i~I~G~SGsGKTTLL~~Ia~l~~p--d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~i 245 (450)
T PRK06002 168 IGIFAGSGVGKSTLLAMLARADAF--DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAI 245 (450)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 459999999999999988763221 234455433344455555444444331111 01111111 11234
Q ss_pred HHHH--ccCceEEEecCC
Q 048135 211 EKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 211 ~~~l--~~~~~LlvlDdv 226 (1189)
.+++ +++.+|+++||+
T Consensus 246 AEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 246 AEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHcCCCEEEeccch
Confidence 4554 588999999999
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.05 E-value=0.41 Score=50.79 Aligned_cols=84 Identities=18% Similarity=0.134 Sum_probs=49.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC--------------------C
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS--------------------N 199 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------------------~ 199 (1189)
..+.|+|.+|+|||++|.++.... .+.=..++|++..+. ..++.+++ .+++-... .
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~-~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGA-LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccccC
Confidence 445699999999999999885421 122235778877654 34444443 22221100 1
Q ss_pred CCChhHHHHHHHHHHcc-CceEEEecCCC
Q 048135 200 LKDLNQVQIQLEKAIAG-QKFLIVLDNVW 227 (1189)
Q Consensus 200 ~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 227 (1189)
..+.+++...+.+.+.. +.-++|+|.+-
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 12234566666666654 55589999974
No 341
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.02 E-value=0.1 Score=29.09 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=11.5
Q ss_pred CcceEEEeccCCCcccC
Q 048135 524 KKLRVLSLKSYHIIELP 540 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp 540 (1189)
++|++|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 342
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.02 E-value=0.081 Score=52.68 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEV 165 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~ 165 (1189)
+++|-||-|+||||||+.+.+....
T Consensus 6 ~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 6 VIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred EEEEecccccCHHHHHHHHHHHhCC
Confidence 4678999999999999999986543
No 343
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.01 E-value=0.49 Score=46.80 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC--CcCHHHHHHHHHHHccCCCCCCCChhH-HHHHHHHHHccC
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE--DFDVLKITKAILESVTSSPSNLKDLNQ-VQIQLEKAIAGQ 217 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~ 217 (1189)
.++|+|..|.|||||.+.+..... ...+.+++.-.. ..+..+..+ ..++.-. + -+..+ ..-.+.+.+-.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-q-LS~G~~qrl~laral~~~ 100 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARR---AGIAMVY-Q-LSVGERQMVEIARALARN 100 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHh---cCeEEEE-e-cCHHHHHHHHHHHHHhcC
Confidence 456999999999999999986422 134445542211 111111111 1111100 1 12222 223355566667
Q ss_pred ceEEEecCCCCC-ChhhHHhhccccCCC-CCCcEEEEEcCCchhhh
Q 048135 218 KFLIVLDNVWSK-NYGLWKTLKSPFMAG-TPGSKIIVTTRSVDVAL 261 (1189)
Q Consensus 218 ~~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 261 (1189)
+-++++|+--.. +....+.+...+... ..|..||++|.+.....
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 788999987432 222233333333221 23667888888866433
No 344
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=91.95 E-value=0.11 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++.|.|..|.||||+.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5677999999999999988764
No 345
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=1 Score=45.62 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=36.1
Q ss_pred HHHHHccCceEEEecCCCCCC-hhhHHhhccccCC-CCCCcEEEEEcCCchhhhccCCCceE
Q 048135 210 LEKAIAGQKFLIVLDNVWSKN-YGLWKTLKSPFMA-GTPGSKIIVTTRSVDVALTLGPIDYY 269 (1189)
Q Consensus 210 l~~~l~~~~~LlvlDdv~~~~-~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~ 269 (1189)
+.+.+-=++=+.|||.-++.- .+....+...+.. ..+|+-++|.|..+.++....++.+|
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 444444567799999986531 1222222222211 13477789999999999988766543
No 346
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=91.86 E-value=1.1 Score=50.44 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=22.5
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcCcccc
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYNDKEVE 166 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~~~~~ 166 (1189)
.+.+++|.|.=|+||||+.+.+.+..+..
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34567899999999999999887654433
No 347
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.85 E-value=0.076 Score=57.19 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+-++|..|+|||++++..........|- ..-++.+..-+...+++.+-..+.......-. --.+|+.+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~-~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~g----------P~~~k~lv 103 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYL-VITINFSAQTTSNQLQKIIESKLEKRRGRVYG----------PPGGKKLV 103 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEE-EEEEES-TTHHHHHHHHCCCTTECECTTEEEE----------EESSSEEE
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccc-eeEeeccCCCCHHHHHHHHhhcEEcCCCCCCC----------CCCCcEEE
Confidence 34599999999999999887642222121 22344444433333322211111110000000 01368889
Q ss_pred EEecCCCCCC
Q 048135 221 IVLDNVWSKN 230 (1189)
Q Consensus 221 lvlDdv~~~~ 230 (1189)
+.+||+--..
T Consensus 104 ~fiDDlN~p~ 113 (272)
T PF12775_consen 104 LFIDDLNMPQ 113 (272)
T ss_dssp EEEETTT-S-
T ss_pred EEecccCCCC
Confidence 9999995443
No 348
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=91.83 E-value=0.31 Score=50.18 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=49.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCCC-------CCCCChhH-----HHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSSP-------SNLKDLNQ-----VQI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~ 208 (1189)
+.|.|..|+|||+|+..+.+... -+..+++.+++. .++.++.+++...-..+. .+.....+ ...
T Consensus 18 ~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~ 94 (215)
T PF00006_consen 18 IGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTAL 94 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccch
Confidence 45999999999999999987532 234477777755 455666666644311111 11111111 111
Q ss_pred HHHHHH--ccCceEEEecCC
Q 048135 209 QLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l--~~~~~LlvlDdv 226 (1189)
.+.+++ +++.+|+++||+
T Consensus 95 t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 95 TIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHTTSEEEEEEETH
T ss_pred hhhHHHhhcCCceeehhhhh
Confidence 233443 689999999999
No 349
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=91.80 E-value=0.4 Score=57.33 Aligned_cols=21 Identities=43% Similarity=0.597 Sum_probs=18.5
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+-|+|..|+|||++|+.+++
T Consensus 88 ~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 88 HVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999975
No 350
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.70 E-value=0.31 Score=60.25 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=48.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccC-ceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQ-KFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~L 220 (1189)
+-++|+.|+|||++|+.+..... ...+.+++++..+.. .+ ..+.+........+ ....+.+.++.+ .-+
T Consensus 491 ~Lf~GP~GvGKT~lAk~LA~~l~----~~~i~id~se~~~~~----~~-~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sV 560 (758)
T PRK11034 491 FLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYMERH----TV-SRLIGAPPGYVGFD-QGGLLTDAVIKHPHAV 560 (758)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC----CCcEEeechhhcccc----cH-HHHcCCCCCccccc-ccchHHHHHHhCCCcE
Confidence 34899999999999999876432 122334444322211 11 22222111100000 011233333333 458
Q ss_pred EEecCCCCCChhhHHhhccccCC
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMA 243 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~ 243 (1189)
++||++...+.+.++.+...+..
T Consensus 561 lllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 561 LLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred EEeccHhhhhHHHHHHHHHHHhc
Confidence 99999987777777777665543
No 351
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=91.69 E-value=0.57 Score=49.66 Aligned_cols=85 Identities=14% Similarity=0.202 Sum_probs=51.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCccc--cC-cCceEEEEecCCc-CHHHHHHHHHHHccCCCC-------CCCChhH-----
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEV--EG-FNPKAWVCVSEDF-DVLKITKAILESVTSSPS-------NLKDLNQ----- 205 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~--~~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~~----- 205 (1189)
+.|.|-.|+|||+|+..+.++... +. -+.++++-+.+.. +..++..++.+.-..... +......
T Consensus 72 ~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~ 151 (276)
T cd01135 72 IPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPR 151 (276)
T ss_pred EEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHH
Confidence 469999999999999888775431 11 4667788787664 455666665543211110 1111111
Q ss_pred HHHHHHHHHc---cCceEEEecCC
Q 048135 206 VQIQLEKAIA---GQKFLIVLDNV 226 (1189)
Q Consensus 206 ~~~~l~~~l~---~~~~LlvlDdv 226 (1189)
....+.++++ ++++|+++||+
T Consensus 152 ~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 152 MALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHhccCCeEEEEEcCh
Confidence 1233556653 68999999999
No 352
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.66 E-value=0.16 Score=52.69 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=18.7
Q ss_pred CCCeEEccCCCcHHHHHHHHh
Q 048135 140 RPPTLVGMGGIGKTTLARLVY 160 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~ 160 (1189)
|.+.|+|..|.||||+.+.+.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 566799999999999998876
No 353
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.60 E-value=0.1 Score=54.35 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.9
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.+++|.|.+|+||||||+.+...
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999874
No 354
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.56 E-value=1 Score=43.85 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.4
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 348999999999999998874
No 355
>PRK07004 replicative DNA helicase; Provisional
Probab=91.56 E-value=6.9 Score=45.92 Aligned_cols=52 Identities=23% Similarity=0.145 Sum_probs=33.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
.+.|-|.+|+|||++|..+..+...+.=..++|+ |-.-+..++...++....
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~f--SlEM~~~ql~~R~la~~~ 266 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVF--SMEMPGTQLAMRMLGSVG 266 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEE--eCCCCHHHHHHHHHHhhc
Confidence 4568899999999999887653322221123443 455567777777775543
No 356
>PRK06762 hypothetical protein; Provisional
Probab=91.53 E-value=0.098 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.+.|+|+.|+||||+|+.+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999998864
No 357
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=91.50 E-value=0.57 Score=53.19 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=48.8
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhH-----HHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQ-----VQI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~ 208 (1189)
+.|+|..|+|||||++.+.... ..+.++.+-+.+.. .+.++.++++..-.... .+...... ...
T Consensus 165 igI~G~sG~GKSTLL~~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~ 241 (444)
T PRK08972 165 MGLFAGSGVGKSVLLGMMTRGT---TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETAT 241 (444)
T ss_pred EEEECCCCCChhHHHHHhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHH
Confidence 3599999999999999998632 23555566666554 34555555544321111 01111111 112
Q ss_pred HHHHHH--ccCceEEEecCC
Q 048135 209 QLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l--~~~~~LlvlDdv 226 (1189)
.+.+++ +++.+|+++||+
T Consensus 242 tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 242 TIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHcCCCEEEEEcCh
Confidence 345555 689999999999
No 358
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.46 E-value=1.1 Score=48.78 Aligned_cols=51 Identities=22% Similarity=0.170 Sum_probs=32.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESV 193 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 193 (1189)
.+.|.|.+|+||||+|.++........=..++|++... ...++...+...+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 45589999999999998876543222123467877655 3455555555443
No 359
>PRK09165 replicative DNA helicase; Provisional
Probab=91.44 E-value=7.4 Score=46.18 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-------------c-CceEEEEecCCcCHHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-------------F-NPKAWVCVSEDFDVLKITKAILESV 193 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-------------f-~~~~wv~~~~~~~~~~~~~~i~~~l 193 (1189)
.+.|-|.+|+||||+|..+..+..... - ..+++ +|-.-+..++...++...
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~--fSlEMs~~ql~~R~la~~ 283 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGF--FSLEMSAEQLATRILSEQ 283 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEE--EeCcCCHHHHHHHHHHHh
Confidence 456889999999999977654321110 0 12333 355556777777776654
No 360
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.42 E-value=0.6 Score=46.74 Aligned_cols=125 Identities=21% Similarity=0.240 Sum_probs=59.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC--CcCHHHHHHHHHHHccCCCCCC---------CChhHHH-H
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE--DFDVLKITKAILESVTSSPSNL---------KDLNQVQ-I 208 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~---------~~~~~~~-~ 208 (1189)
.++|+|..|.|||||++.+..-... ..+.+++.-.. ........+.+. -+ .+.... -+..+.+ -
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~-~~-~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQWDPNELGDHVG-YL-PQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcccCCHHHHHhheE-EE-CCCCccccCcHHHHCcCHHHHHHH
Confidence 4579999999999999999864221 23333331110 111111111110 00 000000 1112222 2
Q ss_pred HHHHHHccCceEEEecCCCCC-ChhhHHhhccccCC-CCCCcEEEEEcCCchhhhccCCCceEeC
Q 048135 209 QLEKAIAGQKFLIVLDNVWSK-NYGLWKTLKSPFMA-GTPGSKIIVTTRSVDVALTLGPIDYYNL 271 (1189)
Q Consensus 209 ~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l 271 (1189)
.+.+.+-.++=++++|+-... +......+...+.. ...|..||++|.+.+.... .++++.+
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 344556666778999987432 11222223222221 1236678888888776542 3344443
No 361
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.41 E-value=0.25 Score=51.61 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.3
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|++|+||||+|+.+...
T Consensus 3 I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998763
No 362
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=91.35 E-value=0.62 Score=52.66 Aligned_cols=19 Identities=47% Similarity=0.775 Sum_probs=17.1
Q ss_pred eEEccCCCcHHHHHHHHhc
Q 048135 143 TLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~ 161 (1189)
+|+|+.|.||||||+.+.-
T Consensus 366 gIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 366 GIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred EEECCCCccHHHHHHHHHc
Confidence 4999999999999998764
No 363
>PRK08006 replicative DNA helicase; Provisional
Probab=91.35 E-value=7.1 Score=45.84 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=32.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
.+.|-|.+|+|||++|..+..+...+.-..++++ |-.-+..++...++....
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~f--SlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIF--SLEMPGEQIMMRMLASLS 277 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEE--eccCCHHHHHHHHHHHhc
Confidence 4557899999999999877654322221223333 444667778777776653
No 364
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.24 E-value=0.39 Score=47.87 Aligned_cols=118 Identities=14% Similarity=0.030 Sum_probs=58.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceE--EEEecCCcCHHHHHHHHH--HHc--cCCC-CCCCC-------hhHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKA--WVCVSEDFDVLKITKAIL--ESV--TSSP-SNLKD-------LNQV 206 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~--~~l--~~~~-~~~~~-------~~~~ 206 (1189)
.+-|+|-.|-||||.|..+.-+..-.++...+ |+.-.........++.+- .-. +... ....+ ..+.
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~ 103 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAREG 103 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHHH
Confidence 45599999999999997665432212233222 222221234444443320 000 1100 00011 1122
Q ss_pred HHHHHHHHccCce-EEEecCCCC---CChhhHHhhccccCCCCCCcEEEEEcCCch
Q 048135 207 QIQLEKAIAGQKF-LIVLDNVWS---KNYGLWKTLKSPFMAGTPGSKIIVTTRSVD 258 (1189)
Q Consensus 207 ~~~l~~~l~~~~~-LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 258 (1189)
....++.+...+| ++|||.+-. -..-..+++...+....++..||+|=|+..
T Consensus 104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3334555555454 999999822 111234455555555556779999999763
No 365
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=7.5 Score=46.15 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHH
Q 048135 106 KIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKI 185 (1189)
Q Consensus 106 ~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 185 (1189)
-+.+++.-++++.+--.+|.......+ -.-+.-+-++|++|.|||-||.++...... -+|.|-.+
T Consensus 671 g~~~~k~~l~~~i~~P~kyp~if~~~p---lr~~~giLLyGppGcGKT~la~a~a~~~~~------~fisvKGP------ 735 (952)
T KOG0735|consen 671 GLFEAKKVLEEVIEWPSKYPQIFANCP---LRLRTGILLYGPPGCGKTLLASAIASNSNL------RFISVKGP------ 735 (952)
T ss_pred cHHHHHHHHHHHHhccccchHHHhhCC---cccccceEEECCCCCcHHHHHHHHHhhCCe------eEEEecCH------
Confidence 456667777777665555532111110 011122458999999999999999874322 24555433
Q ss_pred HHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEEecCCCCCC-----------hhhHHhhccccCC--CCCCcEEEE
Q 048135 186 TKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIVLDNVWSKN-----------YGLWKTLKSPFMA--GTPGSKIIV 252 (1189)
Q Consensus 186 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~iiv 252 (1189)
+++.+..+ .+.+.+.....+.-..+++.+.+|..++-. ....+++...+.. +-.|--|+.
T Consensus 736 --ElL~KyIG-----aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~a 808 (952)
T KOG0735|consen 736 --ELLSKYIG-----ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILA 808 (952)
T ss_pred --HHHHHHhc-----ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEE
Confidence 22222211 112223333344446789999999986521 1234455544432 234555654
Q ss_pred EcCCchhhhcc-----CCCceEeCCCCChhhHHHHHHHhh
Q 048135 253 TTRSVDVALTL-----GPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 253 Ttr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
.|..++..+.. .-++.+.-..-++.+-.++|..-+
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 44333332211 122344445556666777776654
No 366
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=91.22 E-value=3.9 Score=44.65 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=60.6
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-chhhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-VDVALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++=++|+||+........+.+...+....+++.+|++|.+ ..+... ......+++.++++++..+.+....
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~------ 162 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN------ 162 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC------
Confidence 46678889998666556677777777766667777765543 334332 2334789999999999887766531
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
.+ ++.+..++...+|.=-|+..+
T Consensus 163 -~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 163 -KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred -CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 11 123556666777633555553
No 367
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=91.12 E-value=6.9 Score=44.13 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=74.4
Q ss_pred ceEEEecCCCCCC---------hhhHHhhccccCCCCCCcEEEEEcCCchhhhccC------CCceEeCCCCChhhHHHH
Q 048135 218 KFLIVLDNVWSKN---------YGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLG------PIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 218 ~~LlvlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~------~~~~~~l~~L~~~~~~~l 282 (1189)
|-+||+|+.-... ..+|.... -. .+=.+||++|-+........ ....+.+...+.+-|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~L---v~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASL---VQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHH---Hh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6789999974422 12343322 22 24458999998766554332 235788999999999999
Q ss_pred HHHhhccCCCc------------cc----chhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCh-hHHHHHHh
Q 048135 283 FEKHAFENRDA------------SA----HQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRD-DEWQGILK 338 (1189)
Q Consensus 283 f~~~a~~~~~~------------~~----~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~-~~w~~~l~ 338 (1189)
...+.-..... .. ......-....++..||--.-+..+++.++....+ +.-+.+..
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88876432110 00 01233344678899999999999999999887654 34455544
No 368
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.09 E-value=0.13 Score=46.68 Aligned_cols=20 Identities=45% Similarity=0.610 Sum_probs=17.5
Q ss_pred eEEccCCCcHHHHHHHHhcC
Q 048135 143 TLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~ 162 (1189)
-|+|.+|+|||++|+.+..+
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 38999999999999987764
No 369
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.09 E-value=0.67 Score=53.15 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=50.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhH-----HHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQ-----VQI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~ 208 (1189)
+.|.|..|+|||||+..+........=+.++++-+.+.. .+.++.+++...-.... .+...... ...
T Consensus 147 ~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~ 226 (463)
T PRK09280 147 IGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGL 226 (463)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHH
Confidence 359999999999999887653221111346667676554 45666666665322111 11111111 223
Q ss_pred HHHHHH---ccCceEEEecCC
Q 048135 209 QLEKAI---AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l---~~~~~LlvlDdv 226 (1189)
.+.+++ +++.+|+++||+
T Consensus 227 tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 227 TMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHhcCCceEEEecch
Confidence 456666 679999999999
No 370
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.08 E-value=0.5 Score=54.36 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=51.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChh-----HHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLN-----QVQI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~~~ 208 (1189)
+.|.|..|+|||||+.++.+......-+.++++-+.+.. .+.++..++...-.... .+..... ....
T Consensus 146 ~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~ 225 (461)
T PRK12597 146 TGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGL 225 (461)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHH
Confidence 359999999999999887764332225666777676553 45566666654321111 0111111 1223
Q ss_pred HHHHHH--c-cCceEEEecCC
Q 048135 209 QLEKAI--A-GQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l--~-~~~~LlvlDdv 226 (1189)
.+.+++ + ++.+|+++||+
T Consensus 226 tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 226 TIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHhcCCceEEEeccc
Confidence 455666 3 78999999999
No 371
>PRK03839 putative kinase; Provisional
Probab=91.08 E-value=0.12 Score=52.13 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.|+|++|+||||+|+.+++..
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999998853
No 372
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.08 E-value=0.26 Score=49.58 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
++.|+|++|+||||+|+.+....
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999988743
No 373
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.04 E-value=0.33 Score=52.31 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=25.1
Q ss_pred ceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcC
Q 048135 218 KFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTR 255 (1189)
Q Consensus 218 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 255 (1189)
+.++|+|...+-.+.+...+. ...++||||+.|--
T Consensus 352 ~~FiIIDEaQNLTpheikTil---tR~G~GsKIVl~gd 386 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTIL---TRAGEGSKIVLTGD 386 (436)
T ss_pred cceEEEehhhccCHHHHHHHH---HhccCCCEEEEcCC
Confidence 458999999776555554444 44578999998854
No 374
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.87 E-value=0.9 Score=45.48 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccC--CCC---CC--------CChhHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTS--SPS---NL--------KDLNQVQ 207 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~---~~--------~~~~~~~ 207 (1189)
.++|+|..|.|||||++.+...... ..+.+++.-....+.. ......+.. +.. .. -+..+.+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 4679999999999999999874221 2334443211000000 111111110 000 00 1112222
Q ss_pred -HHHHHHHccCceEEEecCCCCC-ChhhHHhhccccCCC-CCCcEEEEEcCCchhhh
Q 048135 208 -IQLEKAIAGQKFLIVLDNVWSK-NYGLWKTLKSPFMAG-TPGSKIIVTTRSVDVAL 261 (1189)
Q Consensus 208 -~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 261 (1189)
-.+.+.+..++=++++|+--.. +....+.+...+... ..|..||++|.+.....
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2355667778889999987432 112222333333221 23667889988876554
No 375
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.83 E-value=8 Score=43.45 Aligned_cols=56 Identities=23% Similarity=0.176 Sum_probs=34.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEE-ecCCcCHHHHHHHHHHHccCC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVC-VSEDFDVLKITKAILESVTSS 196 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~ 196 (1189)
.++-.+|.-|.||||.|-.+.+..+.+++.. .-|+ -...+...+-++.+.++++.+
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kv-llVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKV-LLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCce-EEEecccCChHHHHHHHHHHHHcCCc
Confidence 3455899999999999987766443322432 2222 223344555667777777654
No 376
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.78 E-value=0.045 Score=55.83 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=80.8
Q ss_pred ccCcccccEEeccccccc-----cccccccCCCCCcEEeccCcccc----ccCch-------hhhccccCCcccccCCcc
Q 048135 543 IGRLMHLRYLDMSNTAIS-----SLPESTCSLINLQTLLLRRCFYL----MKWPS-------KVMNLINLRHLDITDVHL 606 (1189)
Q Consensus 543 i~~l~~L~~L~L~~~~i~-----~LP~~i~~L~~L~~L~L~~~~~l----~~lp~-------~i~~L~~L~~L~l~~~~~ 606 (1189)
+..+..+..++||+|.|. .|...|.+-.+|+.-+++.- .. .++|+ .+-++++|+..+|++|..
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 345778899999999876 45566777888998888753 22 22333 345678899999988875
Q ss_pred cccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCC--CCcc-------hHHHhccCCCC
Q 048135 607 IKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYP--FRAY-------SQSVLGMLKSH 677 (1189)
Q Consensus 607 ~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~-------~~~~l~~l~~~ 677 (1189)
....|..++ ..++...+|.+|.++.++- ..+. +..........
T Consensus 105 g~~~~e~L~----------------------------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k 156 (388)
T COG5238 105 GSEFPEELG----------------------------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK 156 (388)
T ss_pred CcccchHHH----------------------------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC
Confidence 444443321 1244455556666654431 1110 11222333455
Q ss_pred CCcceEEEeeeCCCCCCCCCCCC---CCCceeEEEecCCC
Q 048135 678 TSLKELTIKCYGGTRFPSWVGDP---SFSNIVMITLESCT 714 (1189)
Q Consensus 678 ~~L~~L~l~~~~~~~~p~~~~~~---~~~~L~~L~l~~~~ 714 (1189)
+.|+......|.....|.-.... +-.+|+.+.+..|.
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg 196 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG 196 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC
Confidence 67777777666655554322110 11356666665553
No 377
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.77 E-value=0.42 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.9
Q ss_pred CCCCeEEccCCCcHHHHHHHHhc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+.+++|.|..|+||||+|+.+..
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999987643
No 378
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=90.76 E-value=0.43 Score=52.02 Aligned_cols=83 Identities=23% Similarity=0.134 Sum_probs=47.3
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKA 213 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 213 (1189)
-|++-|+|..|+||||||..+....... -..++||+....++... ++.++.+.. .....++....+.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~l 126 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQL 126 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHH
Confidence 3556799999999999998877632212 34578998877766543 344443321 122344455555555
Q ss_pred Hcc-CceEEEecCCC
Q 048135 214 IAG-QKFLIVLDNVW 227 (1189)
Q Consensus 214 l~~-~~~LlvlDdv~ 227 (1189)
++. ..-++|+|-|-
T Consensus 127 irsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 127 IRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHTTSESEEEEE-CT
T ss_pred hhcccccEEEEecCc
Confidence 543 34588899883
No 379
>PTZ00301 uridine kinase; Provisional
Probab=90.76 E-value=0.13 Score=52.95 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+|+|.|.+|+||||+|+.+...
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHH
Confidence 4679999999999999988753
No 380
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.74 E-value=0.92 Score=44.88 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.0
Q ss_pred eEEccCCCcHHHHHHHHhcC
Q 048135 143 TLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~ 162 (1189)
.|+|+.|+||||+|+.+...
T Consensus 2 ~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 48999999999999998874
No 381
>PRK12678 transcription termination factor Rho; Provisional
Probab=90.71 E-value=0.47 Score=54.95 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=45.7
Q ss_pred EEccCCCcHHHHHHHHhcCccccCcCceE-EEEecCCc-CHHHHHHHHHHHccCCCCCCCC-----hhHHHHHHHHHH--
Q 048135 144 LVGMGGIGKTTLARLVYNDKEVEGFNPKA-WVCVSEDF-DVLKITKAILESVTSSPSNLKD-----LNQVQIQLEKAI-- 214 (1189)
Q Consensus 144 I~G~gG~GKTtla~~v~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~l~~~l-- 214 (1189)
|+|.+|+|||||++.|.+......-++.+ .+-|.+.. .+.++.+.+-.++-....+... ...+...+.+++
T Consensus 421 Ivgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre 500 (672)
T PRK12678 421 IVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVE 500 (672)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998843222223333 33444443 3444444331112211111111 111223344555
Q ss_pred ccCceEEEecCC
Q 048135 215 AGQKFLIVLDNV 226 (1189)
Q Consensus 215 ~~~~~LlvlDdv 226 (1189)
.++.+||++|++
T Consensus 501 ~G~dVlillDSl 512 (672)
T PRK12678 501 LGKDVVVLLDSI 512 (672)
T ss_pred cCCCEEEEEeCc
Confidence 689999999999
No 382
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=90.68 E-value=0.71 Score=47.52 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 34679999999999999998875
No 383
>CHL00206 ycf2 Ycf2; Provisional
Probab=90.64 E-value=1.5 Score=57.99 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=20.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEV 165 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~ 165 (1189)
.+-++|++|.|||.||++++.+..+
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3449999999999999999986543
No 384
>PRK05636 replicative DNA helicase; Provisional
Probab=90.62 E-value=8.5 Score=45.60 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=32.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
.+.|-|.+|+|||++|..+......+. .. +++ +|-.-+..++...++....
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~-v~~--fSlEMs~~ql~~R~ls~~s 318 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKA-SVI--FSLEMSKSEIVMRLLSAEA 318 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCe-EEE--EEeeCCHHHHHHHHHHHhc
Confidence 456889999999999987765432222 22 222 2445566777777765543
No 385
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=1.8 Score=44.07 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
-+-.+|++|.|||-+|++....
T Consensus 207 GvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHh
Confidence 3568999999999999998763
No 386
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.61 E-value=0.93 Score=47.79 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.6
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.+++|.|..|.|||||++.+...
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999988864
No 387
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.61 E-value=0.13 Score=53.26 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+++|+|.+|+||||||+.+...
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999864
No 388
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=90.58 E-value=0.3 Score=53.89 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCc
Q 048135 101 VGMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 101 ~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.++...+.++...+...... ....++++.++|++|+||||+|+++.+..
T Consensus 54 ~G~~~~i~~lv~~l~~~a~g--------------~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 54 FGMEEAIERFVNYFKSAAQG--------------LEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred cCcHHHHHHHHHHHHHHHhc--------------CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46666677777666554421 01234567899999999999999987754
No 389
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=3.5 Score=49.25 Aligned_cols=121 Identities=18% Similarity=0.140 Sum_probs=66.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+-.||++|.|||-+|++|+-+.. ..|+.|-.+ +++..... .+.+.+.+...+.-..+++.|
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcs------L~FlSVKGP----ELLNMYVG---------qSE~NVR~VFerAR~A~PCVI 768 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECS------LNFLSVKGP----ELLNMYVG---------QSEENVREVFERARSAAPCVI 768 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhce------eeEEeecCH----HHHHHHhc---------chHHHHHHHHHHhhccCCeEE
Confidence 45899999999999999997532 234445333 22222111 122334444555556789999
Q ss_pred EecCCCCCCh---------h----hHHhhccccC---C-CCCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhH
Q 048135 222 VLDNVWSKNY---------G----LWKTLKSPFM---A-GTPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDC 279 (1189)
Q Consensus 222 vlDdv~~~~~---------~----~~~~l~~~l~---~-~~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~ 279 (1189)
.+|.+++-.+ . ...++...+. . ...+--||=.|..++..+.. ..+..+.|++=+++++
T Consensus 769 FFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 769 FFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred EeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHH
Confidence 9999866211 1 1222332222 2 23445566677766665432 1234566766665555
Q ss_pred HH
Q 048135 280 WS 281 (1189)
Q Consensus 280 ~~ 281 (1189)
..
T Consensus 849 k~ 850 (953)
T KOG0736|consen 849 KL 850 (953)
T ss_pred HH
Confidence 44
No 390
>PRK06547 hypothetical protein; Provisional
Probab=90.55 E-value=0.14 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=19.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|.+|+||||+|+.+...
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999864
No 391
>PRK07773 replicative DNA helicase; Validated
Probab=90.54 E-value=7.3 Score=50.06 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=32.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESV 193 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 193 (1189)
.+.|-|.+|+|||++|..+..+...+.=..++++ |-..+..++...++...
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~f--SlEms~~ql~~R~~s~~ 269 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIF--SLEMSKEQLVMRLLSAE 269 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEE--ecCCCHHHHHHHHHHHh
Confidence 3568899999999999888754322211234443 44455667777766543
No 392
>PTZ00185 ATPase alpha subunit; Provisional
Probab=90.51 E-value=1.2 Score=51.15 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=48.0
Q ss_pred eEEccCCCcHHHHH-HHHhcCccc------cCcCceEEEEecCCcCHHHHHHHHHHHcc-CCCC-----CCCC--hhH--
Q 048135 143 TLVGMGGIGKTTLA-RLVYNDKEV------EGFNPKAWVCVSEDFDVLKITKAILESVT-SSPS-----NLKD--LNQ-- 205 (1189)
Q Consensus 143 ~I~G~gG~GKTtla-~~v~~~~~~------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~-----~~~~--~~~-- 205 (1189)
.|.|-.|+|||+|| ..+.+...+ +.-+.++++-+++......-..+.+++-+ .... ...+ ..+
T Consensus 193 lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~ 272 (574)
T PTZ00185 193 LIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYL 272 (574)
T ss_pred EeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHH
Confidence 49999999999997 556664322 12345778888877544333344443332 1110 1111 111
Q ss_pred ---HHHHHHHHH--ccCceEEEecCC
Q 048135 206 ---VQIQLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 206 ---~~~~l~~~l--~~~~~LlvlDdv 226 (1189)
....+.+++ +++.+|+|+||+
T Consensus 273 Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 273 APYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 112344444 578999999999
No 393
>PRK05595 replicative DNA helicase; Provisional
Probab=90.50 E-value=8.9 Score=45.03 Aligned_cols=52 Identities=15% Similarity=0.069 Sum_probs=32.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
.+.|-|.+|+|||++|..+..+...+.=..++|++ -.-+..++...++....
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fS--lEms~~~l~~R~~a~~~ 254 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFS--LEMSKEQLAYKLLCSEA 254 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEe--cCCCHHHHHHHHHHHhc
Confidence 34578999999999998876542222212244543 34467777777766654
No 394
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.41 E-value=0.86 Score=51.97 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=43.0
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecC-CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSE-DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
.+++.++|..|+||||++..+........ .+.+..++... .....+-+....+.++.+.....+..+....+. .+++
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~~ 269 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELRG 269 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-HhcC
Confidence 35678999999999999987765321111 23344443322 123333344444444433333333333333222 2344
Q ss_pred CceEEEecCC
Q 048135 217 QKFLIVLDNV 226 (1189)
Q Consensus 217 ~~~LlvlDdv 226 (1189)
+ -++++|-.
T Consensus 270 ~-d~VLIDTa 278 (420)
T PRK14721 270 K-HMVLIDTV 278 (420)
T ss_pred C-CEEEecCC
Confidence 3 34555654
No 395
>PRK05748 replicative DNA helicase; Provisional
Probab=90.40 E-value=9.7 Score=44.80 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=33.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
.+.|-|.+|+|||++|..+..+...+.=..++++ |-.-+..++...++....
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~f--SlEms~~~l~~R~l~~~~ 256 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIF--SLEMGAESLVMRMLCAEG 256 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEE--eCCCCHHHHHHHHHHHhc
Confidence 4568899999999999887654322211234454 444456677777765543
No 396
>PRK06696 uridine kinase; Validated
Probab=90.39 E-value=0.15 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.8
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.+|+|.|.+|+||||+|+++...
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999864
No 397
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=90.36 E-value=0.63 Score=47.66 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999874
No 398
>PRK05439 pantothenate kinase; Provisional
Probab=90.35 E-value=1.4 Score=48.12 Aligned_cols=79 Identities=14% Similarity=0.022 Sum_probs=40.6
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCcccc-CcCceEEEEecCCcCHHHHHHHHHHHcc-CCCCCCCChhHHHHHHHHHHcc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVE-GFNPKAWVCVSEDFDVLKITKAILESVT-SSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
+.+++|.|.+|+||||+|+.+..-.... .-..+.-|+...-+-..+.+..- ..+. .+..+.-|.+.+...+.....+
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~Lk~G 164 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDVKSG 164 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHHHcC
Confidence 4567899999999999998887532111 11223334443332222222110 0111 1122345666666666666566
Q ss_pred Cc
Q 048135 217 QK 218 (1189)
Q Consensus 217 ~~ 218 (1189)
+.
T Consensus 165 ~~ 166 (311)
T PRK05439 165 KP 166 (311)
T ss_pred CC
Confidence 54
No 399
>PTZ00035 Rad51 protein; Provisional
Probab=90.27 E-value=1.2 Score=49.83 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=35.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccc---cC--cCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEV---EG--FNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~---~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
+..|+|..|+||||++..++-.... .. =..++||+....|...++ .++++..+
T Consensus 120 iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 120 ITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred EEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 3459999999999999887643221 11 234669988777777664 44455543
No 400
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=90.26 E-value=0.64 Score=53.18 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=51.2
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhH-----HHHH
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQ-----VQIQ 209 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~~ 209 (1189)
.|.|.+|+|||+|+..+........-+.++|+-+.+.. ...++.+++...-.... .+...... ....
T Consensus 142 ~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~t 221 (449)
T TIGR03305 142 GLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALT 221 (449)
T ss_pred EeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 59999999999999888665321223567788776664 45556666554311111 11111111 2234
Q ss_pred HHHHHc---cCceEEEecCC
Q 048135 210 LEKAIA---GQKFLIVLDNV 226 (1189)
Q Consensus 210 l~~~l~---~~~~LlvlDdv 226 (1189)
+.++++ ++.+|+++||+
T Consensus 222 iAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 222 MAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHhcCCceEEEecCh
Confidence 566664 58999999999
No 401
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.25 E-value=0.19 Score=48.52 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=17.3
Q ss_pred eEEccCCCcHHHHHHHHhc
Q 048135 143 TLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|++|+||||+|+.+..
T Consensus 3 i~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 3 ILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999999999885
No 402
>PRK08840 replicative DNA helicase; Provisional
Probab=90.14 E-value=12 Score=43.87 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=33.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
..+.|-|.+|+|||++|..+......+.-..++|+ |-.-+..++...++....
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~f--SlEMs~~ql~~Rlla~~s 270 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIF--SLEMPAEQLMMRMLASLS 270 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEE--eccCCHHHHHHHHHHhhC
Confidence 34557899999999999776554322221223443 444567778777776654
No 403
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=90.12 E-value=0.36 Score=50.17 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.3
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999998764
No 404
>PLN02924 thymidylate kinase
Probab=90.09 E-value=0.69 Score=48.09 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=25.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPK 171 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~ 171 (1189)
..++|-|..|+||||+|+.+......+++...
T Consensus 17 ~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 17 ALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 45789999999999999999886655545543
No 405
>PRK08149 ATP synthase SpaL; Validated
Probab=90.08 E-value=1.1 Score=51.25 Aligned_cols=82 Identities=16% Similarity=0.297 Sum_probs=48.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC-CcCHHHHHHHHHHHccCCC-------CCCCChh-----HHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE-DFDVLKITKAILESVTSSP-------SNLKDLN-----QVQI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~~~ 208 (1189)
++|+|..|+|||||++.+..... -+.++...+.. ..++.++..+......... .+..... ....
T Consensus 154 i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~ 230 (428)
T PRK08149 154 MGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVAT 230 (428)
T ss_pred EEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHH
Confidence 45999999999999999987422 23333344443 3356666666665432221 1111111 1222
Q ss_pred HHHHHH--ccCceEEEecCC
Q 048135 209 QLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l--~~~~~LlvlDdv 226 (1189)
.+.+++ ++|.+|+++||+
T Consensus 231 tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 231 TVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHcCCCEEEEccch
Confidence 344444 689999999999
No 406
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.07 E-value=0.19 Score=50.41 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=18.9
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|.|.+|+||||+|+.+...
T Consensus 2 i~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999874
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.05 E-value=0.8 Score=50.91 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCcc-ccCcCceEEEEecCC-cCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKE-VEGFNPKAWVCVSED-FDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~-~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
.+++.+||+.|+||||....++.... ..+=..++.|+.... ....+-++..++-++.+-.-..+..++...+.. +++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-LRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-hhc
Confidence 67788999999999975433333222 122345667766433 345555666666666655555566666655543 344
Q ss_pred CceEEEecCC
Q 048135 217 QKFLIVLDNV 226 (1189)
Q Consensus 217 ~~~LlvlDdv 226 (1189)
.. +|.+|-+
T Consensus 282 ~d-~ILVDTa 290 (407)
T COG1419 282 CD-VILVDTA 290 (407)
T ss_pred CC-EEEEeCC
Confidence 43 4444555
No 408
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=90.02 E-value=2.9 Score=43.27 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=18.7
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|.|..|.|||||++.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999875
No 409
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=90.00 E-value=0.28 Score=49.61 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=25.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDV 182 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~ 182 (1189)
++|+|-||+||||+|..+......++ |+ +.=|+...++++
T Consensus 3 IaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 3 IAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred EEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 46999999999999987444333333 43 334555555543
No 410
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=89.97 E-value=0.16 Score=63.20 Aligned_cols=111 Identities=9% Similarity=0.123 Sum_probs=55.6
Q ss_pred cCceEEEecCCCCC-ChhhHHhh----ccccCCCCCCcEEEEEcCCchhhhccCCC-ce--EeCCCCChhhHHHHHHHhh
Q 048135 216 GQKFLIVLDNVWSK-NYGLWKTL----KSPFMAGTPGSKIIVTTRSVDVALTLGPI-DY--YNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~-~~--~~l~~L~~~~~~~lf~~~a 287 (1189)
..+-|+++|..-.. ++..-..+ ...+. ..|+.+|+||.+.++....... .+ +.+. ++. +... | .+-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p-~Yk 474 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-P-TYK 474 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-e-EEE
Confidence 47899999998542 22222223 22222 2478999999998775443211 11 1111 111 1000 1 111
Q ss_pred ccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHhh
Q 048135 288 FENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRDDEWQGILKS 339 (1189)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~~~w~~~l~~ 339 (1189)
+..+.+. ...|-+|++++ |+|-.+.--|..+.+. ...+++.++..
T Consensus 475 l~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~ 519 (771)
T TIGR01069 475 LLKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEK 519 (771)
T ss_pred ECCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 1111111 23466777777 7888887777776544 22345555443
No 411
>PRK13946 shikimate kinase; Provisional
Probab=89.96 E-value=0.22 Score=50.49 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.5
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.+.+.++|+.|+||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999754
No 412
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=89.96 E-value=0.99 Score=51.56 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=47.9
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhH-----HHHH
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQ-----VQIQ 209 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~~ 209 (1189)
.|+|..|+|||||++.+.+... .+.++++-+.+.. .+.++..+.+..-+... .+...... ....
T Consensus 162 ~I~G~sG~GKTtLL~~I~~~~~---~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~t 238 (442)
T PRK08927 162 GIFAGSGVGKSVLLSMLARNAD---ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLA 238 (442)
T ss_pred EEECCCCCCHHHHHHHHHhccC---CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4999999999999999987422 3445556565554 44455554444322111 11111111 1223
Q ss_pred HHHHH--ccCceEEEecCC
Q 048135 210 LEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 210 l~~~l--~~~~~LlvlDdv 226 (1189)
+.+++ +++.+|+++||+
T Consensus 239 iAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 239 IAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHCCCcEEEEEeCc
Confidence 45555 589999999999
No 413
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.89 E-value=0.087 Score=52.25 Aligned_cols=37 Identities=32% Similarity=0.314 Sum_probs=23.7
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED 179 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~ 179 (1189)
-+.|+.|+|||.+|+++..-.........+-++.+..
T Consensus 7 ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 7 LLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp EEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 3799999999999998876322111334445555443
No 414
>PRK14528 adenylate kinase; Provisional
Probab=89.82 E-value=0.35 Score=49.00 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.3
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|++|+||||+|+.+...
T Consensus 4 i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998764
No 415
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=89.78 E-value=1.1 Score=51.23 Aligned_cols=85 Identities=9% Similarity=0.203 Sum_probs=53.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCcccc--C-cC---------ceEEEEecCCcCHHHHHHHHHHHcc-CCCC-------CCC
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVE--G-FN---------PKAWVCVSEDFDVLKITKAILESVT-SSPS-------NLK 201 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~--~-f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~-------~~~ 201 (1189)
++|.|-.|+|||||+..+.+..... . .| .++++-+.+.....+.+.+.+..-+ .... +..
T Consensus 144 igIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p 223 (466)
T TIGR01040 144 IPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDP 223 (466)
T ss_pred eeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCC
Confidence 4599999999999999988654310 0 12 5567777777666666666665543 1111 111
Q ss_pred ChhH-----HHHHHHHHHc---cCceEEEecCC
Q 048135 202 DLNQ-----VQIQLEKAIA---GQKFLIVLDNV 226 (1189)
Q Consensus 202 ~~~~-----~~~~l~~~l~---~~~~LlvlDdv 226 (1189)
.... ....+.++++ ++.+|+++||+
T Consensus 224 ~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 224 TIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111 1233566665 58999999999
No 416
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=89.77 E-value=1.1 Score=45.93 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=24.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC-c--------CceEEEEecCC
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG-F--------NPKAWVCVSED 179 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~-f--------~~~~wv~~~~~ 179 (1189)
..|+|.+|+||||++.++........ | ..++|+.....
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 45999999999999987765433222 2 25677766554
No 417
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=89.76 E-value=1.7 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|+|..|.|||||++.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4679999999999999998875
No 418
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.69 E-value=1.1 Score=54.89 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=48.8
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecC-CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSE-DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
.+++.++|+.|+||||++..+........ ...+..|+... .....+-++...+.++.+.....+.+++...++ .+++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcC
Confidence 35778999999999999988876432222 23445554432 122444555555555544433345555554444 3444
Q ss_pred CceEEEecCC
Q 048135 217 QKFLIVLDNV 226 (1189)
Q Consensus 217 ~~~LlvlDdv 226 (1189)
+. ++++|=.
T Consensus 264 ~D-~VLIDTA 272 (767)
T PRK14723 264 KH-LVLIDTV 272 (767)
T ss_pred CC-EEEEeCC
Confidence 43 6666765
No 419
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.67 E-value=0.61 Score=50.31 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=44.4
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCH--HHHHHHHHHHccCCC---CCCCChhH-HHHHHHH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDV--LKITKAILESVTSSP---SNLKDLNQ-VQIQLEK 212 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l~~ 212 (1189)
++++.++|.+|+||||++..+....... -..+.+|+.. .+.. .+-++...+..+.+. ....+... ....++.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 4567799999999999998877543222 1235555543 2322 222333444443221 11122222 2233444
Q ss_pred HHccCceEEEecCC
Q 048135 213 AIAGQKFLIVLDNV 226 (1189)
Q Consensus 213 ~l~~~~~LlvlDdv 226 (1189)
...+..=++++|-.
T Consensus 150 ~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 150 AKARNIDVVLIDTA 163 (272)
T ss_pred HHHCCCCEEEEeCC
Confidence 34444557888876
No 420
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=89.65 E-value=1.3 Score=47.03 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKA 188 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 188 (1189)
..+.|.|.+|+|||++|.++.... .+.-..++||+..+ +..++.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~-~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNG-LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH-HHcCCcEEEEEeeC--CHHHHHHH
Confidence 345699999999999998764321 12245677887655 34444444
No 421
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.64 E-value=4.4 Score=41.78 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|.|..|.|||||++.+..-
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4579999999999999998764
No 422
>PRK05922 type III secretion system ATPase; Validated
Probab=89.62 E-value=1.3 Score=50.46 Aligned_cols=82 Identities=12% Similarity=0.221 Sum_probs=46.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCCCC-------CCCChhH-----HHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSSPS-------NLKDLNQ-----VQI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~~-----~~~ 208 (1189)
+.|+|..|+|||||.+.+..... .+....+-+++. ....+.+.+.......... +...... ...
T Consensus 160 igI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~ 236 (434)
T PRK05922 160 IGVFSEPGSGKSSLLSTIAKGSK---STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAM 236 (434)
T ss_pred EEEECCCCCChHHHHHHHhccCC---CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHH
Confidence 45999999999999999987422 233333334333 3344455444433322111 1111111 122
Q ss_pred HHHHHH--ccCceEEEecCC
Q 048135 209 QLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l--~~~~~LlvlDdv 226 (1189)
.+.+++ +++.+|+++||+
T Consensus 237 tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 237 TIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHcCCCEEEeccch
Confidence 345555 589999999999
No 423
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=89.62 E-value=0.86 Score=48.37 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=46.5
Q ss_pred CeEEccCCCcHHHHH-HHHhcCccccCcCce-EEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhH-----H
Q 048135 142 PTLVGMGGIGKTTLA-RLVYNDKEVEGFNPK-AWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQ-----V 206 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla-~~v~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~ 206 (1189)
+.|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. +..++.+++.+.-.... .+...... .
T Consensus 72 ~~Ifg~~g~GKt~L~l~~i~~~~---~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~ 148 (274)
T cd01132 72 ELIIGDRQTGKTAIAIDTIINQK---GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYT 148 (274)
T ss_pred EEeeCCCCCCccHHHHHHHHHhc---CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHH
Confidence 459999999999996 5565421 13434 556666654 45566666654321111 11111111 1
Q ss_pred HHHHHHHH--ccCceEEEecCC
Q 048135 207 QIQLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 207 ~~~l~~~l--~~~~~LlvlDdv 226 (1189)
...+.+++ +++.+|+|+||+
T Consensus 149 a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 149 GCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHCCCCEEEEEcCh
Confidence 12334444 578999999999
No 424
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.61 E-value=0.44 Score=53.44 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
++-+-|||..|.|||.|.-..|+...++. . .......+..++-+.+..-...... ...+.+.+.++.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k--------~R~HFh~Fm~~vh~~l~~~~~~~~~----l~~va~~l~~~~ 128 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKR-K--------RRVHFHEFMLDVHSRLHQLRGQDDP----LPQVADELAKES 128 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccc-c--------ccccccHHHHHHHHHHHHHhCCCcc----HHHHHHHHHhcC
Confidence 34456999999999999999998654321 0 1112223334444333321111122 234445666777
Q ss_pred eEEEecCCCCCChhhH---HhhccccCCCCCCcEEEEEcCCchh
Q 048135 219 FLIVLDNVWSKNYGLW---KTLKSPFMAGTPGSKIIVTTRSVDV 259 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~---~~l~~~l~~~~~gs~iivTtr~~~v 259 (1189)
.||.+|...-.+..+- ..+...+. ..|. |+|+|-|...
T Consensus 129 ~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 129 RLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRPP 169 (362)
T ss_pred CEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCCh
Confidence 7999998754443222 22222222 3455 5555555443
No 425
>PRK04040 adenylate kinase; Provisional
Probab=89.61 E-value=0.18 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|++|+||||+++.+...
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4569999999999999998774
No 426
>PRK06936 type III secretion system ATPase; Provisional
Probab=89.60 E-value=1.1 Score=51.01 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=48.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhH-----HHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQ-----VQI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~ 208 (1189)
+.|.|..|+|||||.+.+++... -+.++++-+.+.. .+.++....+..-+... .+...... ...
T Consensus 165 ~~I~G~sG~GKStLl~~Ia~~~~---~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~ 241 (439)
T PRK06936 165 MGIFAAAGGGKSTLLASLIRSAE---VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVAT 241 (439)
T ss_pred EEEECCCCCChHHHHHHHhcCCC---CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHH
Confidence 35999999999999999997432 3556677676654 44444444333211111 01111111 112
Q ss_pred HHHHHH--ccCceEEEecCC
Q 048135 209 QLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l--~~~~~LlvlDdv 226 (1189)
.+.+++ +++.+|+++||+
T Consensus 242 tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 242 SIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHcCCCEEEeccch
Confidence 344555 689999999999
No 427
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=89.58 E-value=1 Score=51.35 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=46.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCC-------CCCCChhH-----HHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSP-------SNLKDLNQ-----VQIQ 209 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~~ 209 (1189)
+.|+|..|+|||||++.+...... ...++...-.+...+.++.+..+..-.... .+...... ....
T Consensus 143 i~I~G~sG~GKTtLl~~I~~~~~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~ 220 (418)
T TIGR03498 143 LGIFAGSGVGKSTLLSMLARNTDA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATA 220 (418)
T ss_pred EEEECCCCCChHHHHHHHhCCCCC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 469999999999999988864321 222332222233345555555444322111 11111111 1223
Q ss_pred HHHHH--ccCceEEEecCC
Q 048135 210 LEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 210 l~~~l--~~~~~LlvlDdv 226 (1189)
+.+++ +++.+|+++||+
T Consensus 221 iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 221 IAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHcCCCEEEeccch
Confidence 45555 578999999999
No 428
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=89.54 E-value=0.23 Score=53.27 Aligned_cols=21 Identities=33% Similarity=0.278 Sum_probs=16.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+||||+|+++...
T Consensus 4 iil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHH
Confidence 458999999999999998764
No 429
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.51 E-value=0.22 Score=51.29 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|.|..|+||||+|+.+..-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999988763
No 430
>PRK13947 shikimate kinase; Provisional
Probab=89.45 E-value=0.23 Score=49.72 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.3
Q ss_pred CeEEccCCCcHHHHHHHHhcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.|+|++|+||||+|+.+.+..
T Consensus 4 I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999998753
No 431
>PRK07667 uridine kinase; Provisional
Probab=89.43 E-value=0.21 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+|+|.|.+|+||||+|+.+...
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999998864
No 432
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.43 E-value=1.3 Score=43.82 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=42.9
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc--CceE
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG--QKFL 220 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~L 220 (1189)
-|.|..|+|||++|.++... ....++++.-.+.++.+ +.+.|......... .....+....+.+.+.+ +.-.
T Consensus 3 li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~-~w~t~E~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 3 LVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDE-MAERIARHRKRRPA-HWRTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred EEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCC-CceEeecHHHHHHHHHhcCCCCE
Confidence 48999999999999988653 12356677666666543 44444432222211 12212222334444422 2337
Q ss_pred EEecCC
Q 048135 221 IVLDNV 226 (1189)
Q Consensus 221 lvlDdv 226 (1189)
+++|.+
T Consensus 77 VLIDcl 82 (169)
T cd00544 77 VLIDCL 82 (169)
T ss_pred EEEEcH
Confidence 889986
No 433
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.42 E-value=0.2 Score=51.44 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=57.1
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCC---hhHHHHHHHHHH--
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKD---LNQVQIQLEKAI-- 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l-- 214 (1189)
+...|.|..|.||||+.+.+...... ...-++|.... ....+...|...+...+..... ...-..++...+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~l--a~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~ 105 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIM--AQIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDY 105 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH--HHcCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHh
Confidence 45679999999999998887532110 01111111110 0012222333333222111111 111111222222
Q ss_pred ccCceEEEecCCCCCC-hhh----HHhhccccCCCCCCcEEEEEcCCchhhhccC
Q 048135 215 AGQKFLIVLDNVWSKN-YGL----WKTLKSPFMAGTPGSKIIVTTRSVDVALTLG 264 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 264 (1189)
..++-|+++|..-... ..+ ...+...+.. .|+.+|++|-+.+++....
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 3567899999973321 111 1122223322 3789999999998887654
No 434
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.40 E-value=0.072 Score=52.31 Aligned_cols=63 Identities=17% Similarity=0.365 Sum_probs=44.8
Q ss_pred CCCCCccceEeeccCCCCcccCC---CCCCCCcCeEEEeccCCCcccc-ccccCCCccccccccCCC
Q 048135 1012 PINLECLHQIYIWDCSSFTSFPK---GGLPNTLSRISIGKCENLVALP-DRMHNLSSLQELEICFPT 1074 (1189)
Q Consensus 1012 ~~~l~~L~~L~l~~~~~l~~~p~---~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~ 1074 (1189)
+.+++.++.|.+.+|..+..... .+..++|+.|+|++|+.+++.. ..+..+++|+.|.+..++
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 44577888888888887765422 2356699999999999888764 456677777777774433
No 435
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.38 E-value=0.68 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.6
Q ss_pred CCCCeEEccCCCcHHHHHHHHhc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
++++.++|..|+||||+|..++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999987765
No 436
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=2 Score=51.24 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=38.0
Q ss_pred CCcEEEEEc-CCchhhhccCC--CceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChH
Q 048135 246 PGSKIIVTT-RSVDVALTLGP--IDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQ 315 (1189)
Q Consensus 246 ~gs~iivTt-r~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 315 (1189)
++--+|.|| +.+++...+.. .+.++++.+++++-.++|++++-... -+-...-++++++|.|.-+
T Consensus 532 ~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~-----~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 532 PPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP-----LNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred CceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc-----cchHHHHHHHHHhcCCCCH
Confidence 343344444 33444433322 26788999999999999999873221 1112234567777776543
No 437
>PF13479 AAA_24: AAA domain
Probab=89.34 E-value=0.93 Score=47.11 Aligned_cols=18 Identities=44% Similarity=0.473 Sum_probs=15.9
Q ss_pred CeEEccCCCcHHHHHHHH
Q 048135 142 PTLVGMGGIGKTTLARLV 159 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v 159 (1189)
+.|+|.+|+||||+|..+
T Consensus 6 ~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEECCCCCCHHHHHHhC
Confidence 359999999999999876
No 438
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=89.32 E-value=1.1 Score=51.21 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=47.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCC-------CCCCCChhHH-----HH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSS-------PSNLKDLNQV-----QI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~~-----~~ 208 (1189)
+.|+|..|+|||||++.+.+... .+..+++.+.+. ..+.++..+....-... ..+....... ..
T Consensus 158 igI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~ 234 (433)
T PRK07594 158 VGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVAT 234 (433)
T ss_pred EEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHH
Confidence 46999999999999999886422 444555555544 34445555543211000 0011111111 22
Q ss_pred HHHHHH--ccCceEEEecCC
Q 048135 209 QLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l--~~~~~LlvlDdv 226 (1189)
.+.+++ +++++|+++||+
T Consensus 235 tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 235 TIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHCCCcEEEEEeCH
Confidence 344555 578999999999
No 439
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.30 E-value=0.17 Score=49.68 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=18.8
Q ss_pred CeEEccCCCcHHHHHHHHhcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999998643
No 440
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.29 E-value=0.053 Score=53.20 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=20.9
Q ss_pred CccceeecccCCCCcccCcCCCCCCCccCceeeccCCCC
Q 048135 1126 TSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKL 1164 (1189)
Q Consensus 1126 ~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l 1164 (1189)
++|+.|+|++|+.+++---.++..+++|+.|.|.+-+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 555555555555555432234555666666666654433
No 441
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=89.28 E-value=0.26 Score=47.04 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=26.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE 178 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~ 178 (1189)
+.|+|..|+|||||++.+.+....+++...+..+...
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 4699999999999999999865544476666666554
No 442
>PRK14527 adenylate kinase; Provisional
Probab=89.27 E-value=0.46 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.1
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.++.|+|.+|+||||+|+.+....
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 346699999999999999988643
No 443
>PRK13949 shikimate kinase; Provisional
Probab=89.25 E-value=0.23 Score=49.32 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.3
Q ss_pred CeEEccCCCcHHHHHHHHhcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.|+|+.|+||||+|+.+....
T Consensus 4 I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5699999999999999998753
No 444
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=89.20 E-value=0.77 Score=56.26 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=50.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAIA 215 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~ 215 (1189)
++-|+|..|+||||||.+++.... +.=..++||+....++. ..+++++.+.. .....++....+...++
T Consensus 62 iteI~G~~GsGKTtLal~~~~~a~-~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 62 VIEIYGPESSGKTTVALHAVANAQ-AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 344999999999999977554221 11345789887777763 25666655432 22334555555555554
Q ss_pred c-CceEEEecCCC
Q 048135 216 G-QKFLIVLDNVW 227 (1189)
Q Consensus 216 ~-~~~LlvlDdv~ 227 (1189)
. +--|+|+|-+-
T Consensus 136 ~~~~~LVVIDSI~ 148 (790)
T PRK09519 136 SGALDIVVIDSVA 148 (790)
T ss_pred cCCCeEEEEcchh
Confidence 4 45689999983
No 445
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.07 E-value=0.22 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|+.|+||||+|+.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999998764
No 446
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=89.07 E-value=0.17 Score=46.32 Aligned_cols=20 Identities=45% Similarity=0.670 Sum_probs=14.9
Q ss_pred eEEccCCCcHHHHHHHHhcC
Q 048135 143 TLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~ 162 (1189)
-|+|.+|+||||+|+++...
T Consensus 3 Lleg~PG~GKT~la~~lA~~ 22 (131)
T PF07726_consen 3 LLEGVPGVGKTTLAKALARS 22 (131)
T ss_dssp EEES---HHHHHHHHHHHHH
T ss_pred eeECCCccHHHHHHHHHHHH
Confidence 38999999999999999873
No 447
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.01 E-value=19 Score=42.23 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESV 193 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 193 (1189)
.+.|-|.+|+|||++|..+..+.....=..++|++. ..+..++...++...
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~Sl--Em~~~~i~~R~~~~~ 247 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSL--EMSAEQLAMRMLSSE 247 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeC--cCCHHHHHHHHHHHh
Confidence 456899999999999988765422221123556544 445666777766554
No 448
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=89.00 E-value=1.9 Score=47.35 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=47.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEec-CCcCHHHHHHHHHHHccCCC-------CCCCChhH-----HH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVS-EDFDVLKITKAILESVTSSP-------SNLKDLNQ-----VQ 207 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~ 207 (1189)
.+.|+|..|.|||||++.+..... -+..+..-+. +..++.++.......-.... .+...... ..
T Consensus 71 ri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a 147 (326)
T cd01136 71 RLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTA 147 (326)
T ss_pred EEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999887432 2233334344 33455666555554322111 11111111 12
Q ss_pred HHHHHHH--ccCceEEEecCC
Q 048135 208 IQLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 208 ~~l~~~l--~~~~~LlvlDdv 226 (1189)
..+.+++ ++|.+|+++||+
T Consensus 148 ~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 148 TAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHcCCCeEEEeccc
Confidence 2234444 589999999998
No 449
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.95 E-value=0.25 Score=49.70 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|++|+||||+|+++...
T Consensus 6 ~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999875
No 450
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.92 E-value=3 Score=43.42 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|+|..|.|||||++.+...
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4579999999999999999864
No 451
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=88.91 E-value=0.26 Score=47.43 Aligned_cols=22 Identities=45% Similarity=0.519 Sum_probs=19.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+-|.|.+|+||||||+++....
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4488999999999999998754
No 452
>PRK09099 type III secretion system ATPase; Provisional
Probab=88.88 E-value=1.3 Score=50.84 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=46.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCC-------CCCCChhH-----HHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSP-------SNLKDLNQ-----VQIQ 209 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~~ 209 (1189)
+.|.|..|+|||||++.+...... -..+++..-.+...+.++.+.+...-.... .+...... ....
T Consensus 166 ~~I~G~sG~GKTtLl~~ia~~~~~--d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~t 243 (441)
T PRK09099 166 MGIFAPAGVGKSTLMGMFARGTQC--DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATA 243 (441)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 359999999999999999864322 123333333344455555555554321111 01111111 1223
Q ss_pred HHHHH--ccCceEEEecCC
Q 048135 210 LEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 210 l~~~l--~~~~~LlvlDdv 226 (1189)
+.+++ +++.+|+++||+
T Consensus 244 iAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 244 IAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHcCCCEEEeccch
Confidence 44555 578999999999
No 453
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=88.82 E-value=0.27 Score=47.27 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=17.2
Q ss_pred CeEEccCCCcHHHHHHHHh
Q 048135 142 PTLVGMGGIGKTTLARLVY 160 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~ 160 (1189)
+.|.|.+|+||||+|+.+.
T Consensus 3 I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEeCCCCCchHHHHHHHH
Confidence 4699999999999999887
No 454
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.80 E-value=0.29 Score=47.50 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.9
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|+|..|+||||+|+.+...
T Consensus 2 I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999864
No 455
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=88.80 E-value=0.33 Score=47.27 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=23.5
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAW 173 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~w 173 (1189)
+.|+|+.|+||||++.++....+.+++...+.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 46899999999999999987544333544433
No 456
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=88.75 E-value=1.2 Score=51.02 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=50.3
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCCC-------CCCCChhH-----HHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSSP-------SNLKDLNQ-----VQI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~ 208 (1189)
+.|.|..|+|||||+..+........=+.++++-+.+. ..+.++.+++...-.... .+...... ...
T Consensus 146 ~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~ 225 (461)
T TIGR01039 146 IGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGL 225 (461)
T ss_pred EEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHH
Confidence 35999999999999988765322111235667767655 355666666654321111 11111111 223
Q ss_pred HHHHHH---ccCceEEEecCC
Q 048135 209 QLEKAI---AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l---~~~~~LlvlDdv 226 (1189)
.+.+++ +++.+|+++||+
T Consensus 226 tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 226 TMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHhcCCeeEEEecch
Confidence 456666 458999999999
No 457
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.74 E-value=0.88 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+...+|++|+|||.+|+.|+..
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~A 461 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIARA 461 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHHH
Confidence 34568999999999999999874
No 458
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.70 E-value=1.4 Score=44.25 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=16.2
Q ss_pred eEEccCCCcHHHHHHHHhc
Q 048135 143 TLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~ 161 (1189)
.|.||+|+||||-+..+.+
T Consensus 52 iisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 52 IISGPPGTGKTTSILCLAR 70 (333)
T ss_pred EeeCCCCCchhhHHHHHHH
Confidence 4899999999998877665
No 459
>PRK14531 adenylate kinase; Provisional
Probab=88.62 E-value=0.49 Score=47.90 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|++|+||||+|+.+...
T Consensus 5 i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998764
No 460
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.57 E-value=0.29 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|++|+||||+|+.+...
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998853
No 461
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=1.1 Score=49.58 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=47.1
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHHccC
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAIAGQ 217 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~~~ 217 (1189)
-|-|-+|||||||.-++..+...+. .+.+|+-.+. ..++ +--+++++.... ...+++++...+.+ .+
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~---~~ 168 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ---EK 168 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh---cC
Confidence 4889999999999998887543332 5666654433 3322 223445543322 23455554444443 67
Q ss_pred ceEEEecCCCC
Q 048135 218 KFLIVLDNVWS 228 (1189)
Q Consensus 218 ~~LlvlDdv~~ 228 (1189)
.-++|+|-+..
T Consensus 169 p~lvVIDSIQT 179 (456)
T COG1066 169 PDLVVIDSIQT 179 (456)
T ss_pred CCEEEEeccce
Confidence 88999999843
No 462
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=88.48 E-value=0.18 Score=49.06 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKE 164 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~ 164 (1189)
.+.++||-|+||||+.+++.....
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcC
Confidence 356899999999999999987543
No 463
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.47 E-value=1 Score=52.23 Aligned_cols=85 Identities=14% Similarity=0.191 Sum_probs=43.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecC-CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSE-DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQ 217 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 217 (1189)
+++.++|..|+||||++..+......+. -..+..|+... .....+-++...+..+.......+..+....+ ..++++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d~ 335 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRNK 335 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccCC
Confidence 5778999999999999988876432221 22345554432 12233334444444443322222222222222 233443
Q ss_pred ceEEEecCC
Q 048135 218 KFLIVLDNV 226 (1189)
Q Consensus 218 ~~LlvlDdv 226 (1189)
-.+++|-.
T Consensus 336 -d~VLIDTa 343 (484)
T PRK06995 336 -HIVLIDTI 343 (484)
T ss_pred -CeEEeCCC
Confidence 46666766
No 464
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=88.47 E-value=1.4 Score=55.01 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=54.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
..|-|+|..|+|||++|+.+++.....+ ...+.+++..-. ...+-..+.....+...... .. .....-....-
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~r~~-~~~v~i~c~~~~-~~~~~~~lfg~~~~~~~g~~--~~---~~g~le~a~~G 472 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSGRNN-RRMVKMNCAAMP-AGLLESDLFGHERGAFTGAS--AQ---RIGRFELADKS 472 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCC-CCeEEEecccCC-hhHhhhhhcCcccccccccc--cc---hhhHHHhcCCC
Confidence 4566999999999999999987432111 122333333221 11111111111110000000 00 11111123345
Q ss_pred EEEecCCCCCChhhHHhhccccCCC-----------CCCcEEEEEcCCc
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAG-----------TPGSKIIVTTRSV 257 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~ 257 (1189)
.|+||||..-.......+...+..+ ....|||.||...
T Consensus 473 tL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 473 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred eEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 7999999765555555665544322 1345888888643
No 465
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=88.44 E-value=0.41 Score=46.84 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.+.|.|++|+|||||+++++.+.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999863
No 466
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.44 E-value=0.3 Score=49.05 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|.|..|+||||+|+.+...
T Consensus 2 i~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999998864
No 467
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.38 E-value=1 Score=48.41 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED 179 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~ 179 (1189)
++.|.|.+|+|||++|.++..... +.=..+++++...+
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a-~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQA-SRGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH-hCCCcEEEEEecCC
Confidence 445999999999999988654321 22235677777543
No 468
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=88.36 E-value=3.3 Score=43.80 Aligned_cols=74 Identities=9% Similarity=0.005 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccceec-CCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEe
Q 048135 103 MKYKIKSITCRLEEICKQRVDLGLQIIA-GMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCV 176 (1189)
Q Consensus 103 ~~~~i~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~ 176 (1189)
+..++.+...+.++.......|-...+. ........+-+.+|+|+.|.||+.|.+.+..-..+.- -+.++||+=
T Consensus 50 l~~~l~~~~~~~~~~~~~~~~~L~~dG~~~SLN~~~qP~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP 125 (369)
T PF02456_consen 50 LLNDLREIQRKVRKQMNEASPYLRPDGSCPSLNYGLQPFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITP 125 (369)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcCCcccccccCCCceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECC
Confidence 4555666666666665555555332111 0111112233346999999999999999987766666 788888853
No 469
>PRK03846 adenylylsulfate kinase; Provisional
Probab=88.35 E-value=0.63 Score=47.81 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|+|++|+||||+|+.+...
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999998863
No 470
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=88.33 E-value=4.8 Score=42.29 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..++|+|..|+||||+.+++...
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCC
Confidence 34679999999999999998864
No 471
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.29 E-value=0.33 Score=46.31 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999874
No 472
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.28 E-value=1.5 Score=49.53 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=42.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAIA 215 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~ 215 (1189)
.+.|.|.+|+||||++.++...... .-..++|++..+. ..++. .-+..++.... ...+.+++...+. +
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~---~ 156 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE---E 156 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH---h
Confidence 3459999999999999988754221 1245677765433 33322 22334443221 1123333333332 2
Q ss_pred cCceEEEecCC
Q 048135 216 GQKFLIVLDNV 226 (1189)
Q Consensus 216 ~~~~LlvlDdv 226 (1189)
.+.-++|+|.+
T Consensus 157 ~~~~lVVIDSI 167 (372)
T cd01121 157 LKPDLVIIDSI 167 (372)
T ss_pred cCCcEEEEcch
Confidence 35567888887
No 473
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=88.27 E-value=3.5 Score=49.07 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=66.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC---CCCChhHHHHHHHHHHccC
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS---NLKDLNQVQIQLEKAIAGQ 217 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~ 217 (1189)
+...||++|+|||.||+.++.....+ | +-+.++.-.|..++ .+... +.. ...+...+++ .+.+
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~Rk-f---vR~sLGGvrDEAEI--------RGHRRTYIGam-PGrIiQ~mkk-a~~~ 417 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALGRK-F---VRISLGGVRDEAEI--------RGHRRTYIGAM-PGKIIQGMKK-AGVK 417 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhCCC-E---EEEecCccccHHHh--------ccccccccccC-ChHHHHHHHH-hCCc
Confidence 44589999999999999998743222 3 22334433333332 11100 111 1223333333 2455
Q ss_pred ceEEEecCCCCCCh----hhHHhhccccCCC-------------CCCcEEE-EEcCC-ch-hh-hccCCCceEeCCCCCh
Q 048135 218 KFLIVLDNVWSKNY----GLWKTLKSPFMAG-------------TPGSKII-VTTRS-VD-VA-LTLGPIDYYNLELLSD 276 (1189)
Q Consensus 218 ~~LlvlDdv~~~~~----~~~~~l~~~l~~~-------------~~gs~ii-vTtr~-~~-v~-~~~~~~~~~~l~~L~~ 276 (1189)
.-+++||.++--.. +--.++...|... --=|.|+ |||-+ -+ +. ....-..++++.+.++
T Consensus 418 NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~ 497 (782)
T COG0466 418 NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTE 497 (782)
T ss_pred CCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCCh
Confidence 67899999853110 0011122211110 0124454 44443 21 11 1223346899999999
Q ss_pred hhHHHHHHHhh
Q 048135 277 DDCWSIFEKHA 287 (1189)
Q Consensus 277 ~~~~~lf~~~a 287 (1189)
+|=.++-+++.
T Consensus 498 ~EKl~IAk~~L 508 (782)
T COG0466 498 DEKLEIAKRHL 508 (782)
T ss_pred HHHHHHHHHhc
Confidence 98888777764
No 474
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=88.27 E-value=0.27 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++.+.|++|+||||+|+++...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999864
No 475
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=88.24 E-value=0.3 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=18.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
|+++|+|-||+||||+|..+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 45779999999999998766543
No 476
>PRK06761 hypothetical protein; Provisional
Probab=88.23 E-value=0.35 Score=51.79 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceE
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKA 172 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~ 172 (1189)
+.+.|.|++|+||||+|+.+++.....+++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 346799999999999999999865433344433
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.16 E-value=0.3 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|+.|+||||+|+.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4569999999999999999873
No 478
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.12 E-value=0.93 Score=44.50 Aligned_cols=115 Identities=19% Similarity=0.174 Sum_probs=58.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc--CHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF--DVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
.+.|+|..|.|||||++.+..... .....+++.-.... ..... ...+..-.. ...-+...-.+.+.+....
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARALLLNP 99 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHHhcCC
Confidence 456999999999999999987432 14445544321111 11111 111111000 1111222233555566667
Q ss_pred eEEEecCCCCC-ChhhHHhhccccCCC-CCCcEEEEEcCCchhhhc
Q 048135 219 FLIVLDNVWSK-NYGLWKTLKSPFMAG-TPGSKIIVTTRSVDVALT 262 (1189)
Q Consensus 219 ~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 262 (1189)
-++++|+.-.. +......+...+... ..+..||++|.+.+....
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 89999987432 112223333322211 125678888887766554
No 479
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.09 E-value=1.2 Score=55.05 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=49.7
Q ss_pred EEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce-EEE
Q 048135 144 LVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF-LIV 222 (1189)
Q Consensus 144 I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-Llv 222 (1189)
..|+.|+|||-||+++..-. ....+.-+-|+. .+... +.+.++.+. .-... +....+-+.++.++| +|.
T Consensus 596 flGpdgvGKt~lAkaLA~~~-Fgse~~~IriDm------se~~e-vskligsp~-gyvG~-e~gg~LteavrrrP~sVVL 665 (898)
T KOG1051|consen 596 FLGPDGVGKTELAKALAEYV-FGSEENFIRLDM------SEFQE-VSKLIGSPP-GYVGK-EEGGQLTEAVKRRPYSVVL 665 (898)
T ss_pred EECCCchhHHHHHHHHHHHH-cCCccceEEech------hhhhh-hhhccCCCc-ccccc-hhHHHHHHHHhcCCceEEE
Confidence 78999999999999887521 111333333333 33333 333333322 11111 122356667777777 566
Q ss_pred ecCCCCCChhhHHhhccccC
Q 048135 223 LDNVWSKNYGLWKTLKSPFM 242 (1189)
Q Consensus 223 lDdv~~~~~~~~~~l~~~l~ 242 (1189)
||||...++.....+...+.
T Consensus 666 fdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 666 FEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred EechhhcCHHHHHHHHHHHh
Confidence 79997777766665555444
No 480
>PRK14529 adenylate kinase; Provisional
Probab=87.97 E-value=1.2 Score=46.25 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=40.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCc--eEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccC-c
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNP--KAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQ-K 218 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~ 218 (1189)
+.|.|++|+||||+|+.+.........+. .+.-.+..........++++.+ ...-..+.....+.+++.+. .
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~-----G~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDR-----GDLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhc-----cCcchHHHHHHHHHHHHhccCC
Confidence 45899999999999998876433222211 0111112222222333333332 11222233445556666432 3
Q ss_pred eEEEecCC
Q 048135 219 FLIVLDNV 226 (1189)
Q Consensus 219 ~LlvlDdv 226 (1189)
--+|||..
T Consensus 78 ~g~iLDGf 85 (223)
T PRK14529 78 NGWLLDGF 85 (223)
T ss_pred CcEEEeCC
Confidence 45889988
No 481
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=87.92 E-value=1.8 Score=49.59 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=46.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCCC-------CCCCChhH-----HHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSSP-------SNLKDLNQ-----VQI 208 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~ 208 (1189)
+.|+|..|.|||||++.+.... ..+.++...+... .+..++...+...-.... .+...... ...
T Consensus 171 igI~G~sG~GKSTLl~~I~g~~---~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~ 247 (451)
T PRK05688 171 LGLFAGTGVGKSVLLGMMTRFT---EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCT 247 (451)
T ss_pred EEEECCCCCCHHHHHHHHhCCC---CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3599999999999999987632 2333333334433 244555555444322111 11111111 112
Q ss_pred HHHHHH--ccCceEEEecCC
Q 048135 209 QLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l--~~~~~LlvlDdv 226 (1189)
.+.+++ +++.+|+++||+
T Consensus 248 aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 248 RIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHCCCCEEEEecch
Confidence 344555 688999999999
No 482
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=87.90 E-value=1.5 Score=50.54 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=46.1
Q ss_pred eEEccCCCcHHHHHH-HHhcCccccCcCce-EEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhHH-----H
Q 048135 143 TLVGMGGIGKTTLAR-LVYNDKEVEGFNPK-AWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQV-----Q 207 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~-~v~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~~-----~ 207 (1189)
.|.|-.|+||||||. .+.+. ++-+.+ +++-+++.. .+.++.+.+.+.-.... .+.....+. .
T Consensus 145 ~I~g~~g~GKt~Lal~~I~~q---~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a 221 (485)
T CHL00059 145 LIIGDRQTGKTAVATDTILNQ---KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTG 221 (485)
T ss_pred EeecCCCCCHHHHHHHHHHhc---ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHH
Confidence 599999999999964 45553 123434 677776554 45555555554321111 011111111 1
Q ss_pred HHHHHHH--ccCceEEEecCC
Q 048135 208 IQLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 208 ~~l~~~l--~~~~~LlvlDdv 226 (1189)
..+.+++ +++.+|+|+||+
T Consensus 222 ~aiAEyfr~~G~~VLlv~Ddl 242 (485)
T CHL00059 222 AALAEYFMYRGRHTLIIYDDL 242 (485)
T ss_pred hhHHHHHHHcCCCEEEEEcCh
Confidence 2244444 578999999999
No 483
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=87.88 E-value=0.29 Score=49.64 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=30.9
Q ss_pred HHHHHHcc--CceEEEecCCCCCC-hhhH----HhhccccCCCCCCcEEEEEcCCchhhhcc
Q 048135 209 QLEKAIAG--QKFLIVLDNVWSKN-YGLW----KTLKSPFMAGTPGSKIIVTTRSVDVALTL 263 (1189)
Q Consensus 209 ~l~~~l~~--~~~LlvlDdv~~~~-~~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 263 (1189)
++...+.. ++-++++|..-..- ...- ..+...+.. ..|..+|++|.+.++...+
T Consensus 68 ~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 68 ETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 34444544 78899999984421 1111 122222222 1367899999988876654
No 484
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=87.77 E-value=2.1 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.|-|+|-.|+||+++|+.++.
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999986
No 485
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=87.76 E-value=0.31 Score=49.59 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++.|.|.+|+||||+|+.+...
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35669999999999999999874
No 486
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=87.76 E-value=0.35 Score=48.27 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|+.|.||||+|+.+...
T Consensus 6 ~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 4679999999999999999874
No 487
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.72 E-value=0.37 Score=30.42 Aligned_cols=19 Identities=53% Similarity=0.725 Sum_probs=10.7
Q ss_pred ccccEEecccccccccccc
Q 048135 547 MHLRYLDMSNTAISSLPES 565 (1189)
Q Consensus 547 ~~L~~L~L~~~~i~~LP~~ 565 (1189)
++|++|+|++|.|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555566666655555544
No 488
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.72 E-value=0.37 Score=30.42 Aligned_cols=19 Identities=53% Similarity=0.725 Sum_probs=10.7
Q ss_pred ccccEEecccccccccccc
Q 048135 547 MHLRYLDMSNTAISSLPES 565 (1189)
Q Consensus 547 ~~L~~L~L~~~~i~~LP~~ 565 (1189)
++|++|+|++|.|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555566666655555544
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.70 E-value=0.33 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|+.|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4569999999999999999764
No 490
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.63 E-value=0.7 Score=51.13 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=54.1
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
..+.|+|..|.||||+++++..... .-..++.+.-........ .....-...........-...+.++..++...=
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 3456999999999999998886421 112222221111111110 000000000000011112234556677888888
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchh
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDV 259 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 259 (1189)
.+|+|.+.. .+.|+.+.. ...+..| ++.|+...++
T Consensus 221 ~ii~gE~r~--~e~~~~l~a-~~~g~~~--~i~T~Ha~~~ 255 (308)
T TIGR02788 221 RIILGELRG--DEAFDFIRA-VNTGHPG--SITTLHAGSP 255 (308)
T ss_pred eEEEeccCC--HHHHHHHHH-HhcCCCe--EEEEEeCCCH
Confidence 899999954 456654333 3233222 4666654443
No 491
>COG4240 Predicted kinase [General function prediction only]
Probab=87.41 E-value=1.1 Score=44.89 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=50.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHcc-----CCCCCCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVT-----SSPSNLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~~l 214 (1189)
-+++|.|+-|+||||+|..+++....++-..++-.++.+-+-..+-+..++++.. ....+..|..-+...+....
T Consensus 51 li~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLnai~ 130 (300)
T COG4240 51 LIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIA 130 (300)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHHHHh
Confidence 3467999999999999999998655444235555555444433344444555532 12235567777777777777
Q ss_pred ccCc
Q 048135 215 AGQK 218 (1189)
Q Consensus 215 ~~~~ 218 (1189)
+++.
T Consensus 131 ~g~~ 134 (300)
T COG4240 131 RGGP 134 (300)
T ss_pred cCCC
Confidence 7763
No 492
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=87.34 E-value=2 Score=49.76 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=48.8
Q ss_pred eEEccCCCcHHHHH-HHHhcCccccCcCc-eEEEEecCCc-CHHHHHHHHHHHccCCCC-------CCCChhH-----HH
Q 048135 143 TLVGMGGIGKTTLA-RLVYNDKEVEGFNP-KAWVCVSEDF-DVLKITKAILESVTSSPS-------NLKDLNQ-----VQ 207 (1189)
Q Consensus 143 ~I~G~gG~GKTtla-~~v~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~~-----~~ 207 (1189)
.|.|-.|+|||||| ..+.+.. .-+. ++++-+++.. .+.++.+.+.+.-..... +.....+ ..
T Consensus 166 ~Ifg~~g~GKT~Lal~~I~~q~---~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a 242 (497)
T TIGR03324 166 LILGDRQTGKTAIAIDTILNQK---GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAA 242 (497)
T ss_pred EeecCCCCCHHHHHHHHHHHhc---CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHH
Confidence 49999999999997 5677642 2454 5777787764 455566655543221110 1111111 11
Q ss_pred HHHHHHH--ccCceEEEecCC
Q 048135 208 IQLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 208 ~~l~~~l--~~~~~LlvlDdv 226 (1189)
..+.+++ +++.+|+|+||+
T Consensus 243 ~aiAEyfrd~G~~VLlv~Ddl 263 (497)
T TIGR03324 243 TSIGEHFMEQGRDVLIVYDDL 263 (497)
T ss_pred HHHHHHHHhCCCCEEEEEcCh
Confidence 2345555 688999999999
No 493
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=87.28 E-value=1.6 Score=48.20 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=20.8
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.++.++|++|+||||++..+....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4567899999999999998887643
No 494
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=87.27 E-value=0.39 Score=44.52 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.5
Q ss_pred eEEccCCCcHHHHHHHHhcCc
Q 048135 143 TLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.|+|..|+|||||.+.+....
T Consensus 3 ~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 3 VVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEECSTTSSHHHHHHHHHHSS
T ss_pred EEECcCCCCHHHHHHHHhcCC
Confidence 589999999999999988654
No 495
>PRK15453 phosphoribulokinase; Provisional
Probab=87.27 E-value=1.7 Score=46.27 Aligned_cols=75 Identities=16% Similarity=0.042 Sum_probs=40.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCc--CHHHHHHHHHH--Hcc--CCC--CCCCChhHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDF--DVLKITKAILE--SVT--SSP--SNLKDLNQVQIQL 210 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~--~~~~~~~~i~~--~l~--~~~--~~~~~~~~~~~~l 210 (1189)
.+++|.|-+|+||||+|+++.... .... ..+.++..... +..+.-..+.. .-+ -+. .+..+.+.+.+.+
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if--~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIF--RRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH--hhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 456799999999999999887522 1111 23344433222 33333222211 111 112 3556777777777
Q ss_pred HHHHcc
Q 048135 211 EKAIAG 216 (1189)
Q Consensus 211 ~~~l~~ 216 (1189)
+...++
T Consensus 84 ~~l~~~ 89 (290)
T PRK15453 84 REYGET 89 (290)
T ss_pred HHHhcC
Confidence 766553
No 496
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=87.23 E-value=0.36 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=18.8
Q ss_pred CeEEccCCCcHHHHHHHHhcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.++|++|+||||+|+++....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988643
No 497
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=87.21 E-value=0.52 Score=51.60 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=28.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITK 187 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 187 (1189)
|++...|.||+||||+|.+..-..... ...+.=|+...-.++.+++.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCCCCchHhhhc
Confidence 456689999999999998744322222 23355555554445554443
No 498
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=87.18 E-value=0.34 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=18.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++.|+|.+|+||||+.+.+-.
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHH
Confidence 4567999999999999987665
No 499
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=87.14 E-value=1.2 Score=45.18 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=19.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++.|.|.+|.||||+|+.+...
T Consensus 20 ~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 20 VIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999998864
No 500
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=87.08 E-value=0.91 Score=49.78 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=35.6
Q ss_pred HHHHHHHccCceEEEecCCCCCChhhHHh--hccccCC--CCCCcEEEEEcCCchhhhccCCCce
Q 048135 208 IQLEKAIAGQKFLIVLDNVWSKNYGLWKT--LKSPFMA--GTPGSKIIVTTRSVDVALTLGPIDY 268 (1189)
Q Consensus 208 ~~l~~~l~~~~~LlvlDdv~~~~~~~~~~--l~~~l~~--~~~gs~iivTtr~~~v~~~~~~~~~ 268 (1189)
.+|.+.+.++.-+++.|..... .+.... +...+.. ...|+.+++.|+.+++.+...++..
T Consensus 516 ~KLAkllaerpn~~~iDEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 516 AKLAKLLAERPNVLLIDEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred HHHHHHHhcCCCcEEhhhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 3567777888788998887331 111111 1111111 1247788888888888887766543
Done!