Query 048135
Match_columns 1189
No_of_seqs 759 out of 5165
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 11:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-44 6.5E-49 432.9 21.0 314 102-451 132-473 (549)
2 3rgz_A Protein brassinosteroid 100.0 3.9E-43 1.3E-47 442.3 29.7 611 516-1187 69-740 (768)
3 3rgz_A Protein brassinosteroid 100.0 3.4E-41 1.2E-45 424.7 25.7 598 487-1167 72-743 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-35 4.7E-40 371.1 34.7 551 524-1166 25-624 (680)
5 1vt4_I APAF-1 related killer D 100.0 1.4E-36 4.6E-41 363.1 18.5 263 139-442 150-436 (1221)
6 3t6q_A CD180 antigen; protein- 100.0 7E-34 2.4E-38 350.7 34.0 510 525-1165 34-561 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 8.1E-34 2.8E-38 350.2 34.3 271 877-1185 281-556 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 5.5E-33 1.9E-37 347.5 37.9 526 518-1143 43-626 (680)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-33 7.1E-38 346.5 31.2 511 524-1141 32-560 (606)
10 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-33 1.2E-37 375.9 26.5 305 99-449 125-452 (1249)
11 3t6q_A CD180 antigen; protein- 100.0 4.8E-32 1.6E-36 334.3 31.2 524 526-1185 14-558 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-30 1.3E-34 327.4 41.9 509 523-1165 23-561 (844)
13 1z6t_A APAF-1, apoptotic prote 100.0 4.1E-30 1.4E-34 314.7 30.6 279 139-447 147-450 (591)
14 2z81_A CD282 antigen, TOLL-lik 100.0 4.4E-30 1.5E-34 312.8 24.6 177 524-714 26-207 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-29 1.5E-33 303.9 32.1 406 526-1049 7-441 (549)
16 2z63_A TOLL-like receptor 4, v 100.0 3.5E-29 1.2E-33 306.7 29.7 488 525-1168 29-535 (570)
17 3j0a_A TOLL-like receptor 5; m 100.0 5.3E-28 1.8E-32 307.8 38.4 490 491-1070 23-554 (844)
18 2z63_A TOLL-like receptor 4, v 100.0 2E-28 6.7E-33 300.1 31.5 484 492-1143 28-535 (570)
19 4ecn_A Leucine-rich repeat pro 100.0 3E-28 1E-32 302.6 25.3 270 673-1052 543-840 (876)
20 4eco_A Uncharacterized protein 100.0 4.4E-28 1.5E-32 297.6 25.6 364 558-1051 194-599 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-27 4.6E-32 297.3 29.4 177 525-714 53-235 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 9.2E-28 3.1E-32 289.9 26.5 444 524-1114 21-483 (520)
23 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-27 7.8E-32 286.4 27.3 83 527-613 3-87 (520)
24 4eco_A Uncharacterized protein 99.9 1.7E-27 5.8E-32 292.5 20.5 383 671-1188 199-633 (636)
25 4g8a_A TOLL-like receptor 4; l 99.9 9.9E-26 3.4E-30 280.4 35.4 93 528-624 35-130 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.8E-27 3E-31 283.5 25.3 94 524-623 31-126 (562)
27 1jl5_A Outer protein YOPM; leu 99.9 3.7E-26 1.3E-30 267.5 24.7 78 523-612 10-88 (454)
28 4ecn_A Leucine-rich repeat pro 99.9 2.9E-26 1E-30 284.8 22.3 365 536-965 437-840 (876)
29 1jl5_A Outer protein YOPM; leu 99.9 2.8E-26 9.7E-31 268.5 20.9 421 540-1185 5-427 (454)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.7E-26 3E-30 274.7 24.1 440 524-1116 52-514 (562)
31 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-24 1.1E-28 251.3 25.7 95 520-623 38-132 (457)
32 1o6v_A Internalin A; bacterial 99.9 1.8E-23 6.1E-28 247.7 25.6 95 523-623 45-139 (466)
33 3v47_A TOLL-like receptor 5B a 99.9 2.5E-23 8.5E-28 246.6 23.5 135 992-1142 275-411 (455)
34 1o6v_A Internalin A; bacterial 99.9 1.8E-22 6.2E-27 239.1 25.3 99 520-624 64-162 (466)
35 3bz5_A Internalin-J, INLJ; leu 99.9 3.4E-22 1.2E-26 234.0 27.1 77 540-623 35-111 (457)
36 4fmz_A Internalin; leucine ric 99.9 5.6E-22 1.9E-26 225.6 20.0 97 521-623 41-137 (347)
37 3v47_A TOLL-like receptor 5B a 99.9 2.3E-21 7.8E-26 229.8 21.9 345 785-1184 30-405 (455)
38 4fmz_A Internalin; leucine ric 99.9 2.7E-21 9.3E-26 219.9 19.9 261 877-1185 84-344 (347)
39 3o6n_A APL1; leucine-rich repe 99.9 8E-21 2.7E-25 219.6 22.7 99 523-623 44-146 (390)
40 2id5_A Lingo-1, leucine rich r 99.9 1.9E-20 6.6E-25 222.9 23.3 100 524-624 32-134 (477)
41 3o6n_A APL1; leucine-rich repe 99.8 1.4E-20 4.9E-25 217.5 19.6 300 491-839 44-350 (390)
42 3oja_B Anopheles plasmodium-re 99.8 4.7E-20 1.6E-24 225.2 22.8 301 523-963 50-356 (597)
43 3oja_B Anopheles plasmodium-re 99.8 4E-20 1.4E-24 225.7 19.9 301 491-839 50-356 (597)
44 2id5_A Lingo-1, leucine rich r 99.8 4.3E-19 1.5E-23 211.2 27.3 298 801-1163 25-332 (477)
45 4fcg_A Uncharacterized protein 99.8 7.6E-20 2.6E-24 204.7 17.9 217 522-804 79-295 (328)
46 1xku_A Decorin; proteoglycan, 99.8 1E-17 3.5E-22 188.6 23.7 280 525-838 32-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 5.2E-18 1.8E-22 191.1 19.1 191 525-736 34-227 (332)
48 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-17 3.8E-22 188.4 21.8 265 881-1186 54-332 (332)
49 3g06_A SSPH2 (leucine-rich rep 99.8 2E-17 6.9E-22 199.0 24.8 79 524-612 40-118 (622)
50 4fcg_A Uncharacterized protein 99.8 5.4E-18 1.8E-22 189.7 17.9 228 880-1160 80-310 (328)
51 1xku_A Decorin; proteoglycan, 99.8 3.6E-17 1.2E-21 184.1 23.2 266 881-1185 52-330 (330)
52 1ogq_A PGIP-2, polygalacturona 99.7 2.8E-18 9.5E-23 190.9 10.8 109 517-625 69-181 (313)
53 3ogk_B Coronatine-insensitive 99.7 4.8E-19 1.6E-23 217.6 2.9 208 515-734 103-326 (592)
54 3ogk_B Coronatine-insensitive 99.7 6.1E-19 2.1E-23 216.6 3.7 255 516-794 65-351 (592)
55 1ogq_A PGIP-2, polygalacturona 99.7 7.2E-18 2.5E-22 187.5 11.6 248 881-1186 50-303 (313)
56 3g06_A SSPH2 (leucine-rich rep 99.7 3.2E-16 1.1E-20 188.6 25.8 130 786-962 41-171 (622)
57 2z80_A TOLL-like receptor 2, v 99.7 1.3E-16 4.4E-21 181.3 15.8 80 525-605 53-135 (353)
58 3zyj_A Leucine-rich repeat-con 99.7 2.4E-15 8.1E-20 176.4 21.9 229 871-1162 56-290 (440)
59 2xwt_C Thyrotropin receptor; s 99.7 1.2E-15 4.3E-20 162.5 16.7 157 1015-1187 79-239 (239)
60 2p1m_B Transport inhibitor res 99.7 1.7E-18 5.7E-23 212.9 -6.6 88 518-605 60-167 (594)
61 2z66_A Variable lymphocyte rec 99.6 5.4E-16 1.8E-20 172.4 14.3 99 524-624 28-132 (306)
62 3zyi_A Leucine-rich repeat-con 99.6 3E-15 1E-19 176.2 21.4 80 881-962 75-157 (452)
63 3zyi_A Leucine-rich repeat-con 99.6 1.4E-15 4.6E-20 179.2 18.4 218 524-818 75-301 (452)
64 2xwt_C Thyrotropin receptor; s 99.6 1.1E-15 3.7E-20 163.0 15.9 210 914-1163 20-238 (239)
65 3o53_A Protein LRIM1, AGAP0063 99.6 4.5E-17 1.6E-21 181.7 4.9 84 516-605 26-110 (317)
66 2z66_A Variable lymphocyte rec 99.6 1.2E-15 4E-20 169.7 15.8 241 885-1163 11-260 (306)
67 2p1m_B Transport inhibitor res 99.6 1.1E-18 3.8E-23 214.6 -9.8 36 903-939 288-324 (594)
68 3zyj_A Leucine-rich repeat-con 99.6 6.5E-15 2.2E-19 172.6 22.6 241 883-1185 45-290 (440)
69 2z80_A TOLL-like receptor 2, v 99.6 7.8E-16 2.7E-20 174.9 13.9 250 881-1166 52-316 (353)
70 3o53_A Protein LRIM1, AGAP0063 99.6 1.3E-16 4.3E-21 178.1 4.7 251 488-804 30-281 (317)
71 1z7x_W Ribonuclease inhibitor; 99.6 1.5E-18 5E-23 206.0 -12.2 86 519-605 23-124 (461)
72 4ay9_X Follicle-stimulating ho 99.6 2.2E-14 7.5E-19 162.3 20.2 150 991-1160 103-255 (350)
73 1ozn_A Reticulon 4 receptor; N 99.6 6.6E-15 2.3E-19 161.6 14.3 247 903-1185 31-285 (285)
74 1p9a_G Platelet glycoprotein I 99.6 1.4E-14 4.9E-19 158.5 16.8 198 927-1185 8-206 (290)
75 1wwl_A Monocyte differentiatio 99.6 4.1E-15 1.4E-19 165.3 10.4 201 522-736 93-306 (312)
76 1ozn_A Reticulon 4 receptor; N 99.6 4.5E-14 1.5E-18 155.0 18.2 218 907-1163 14-237 (285)
77 3oja_A Leucine-rich immune mol 99.6 1E-14 3.5E-19 172.3 14.0 147 1015-1182 119-270 (487)
78 1h6u_A Internalin H; cell adhe 99.6 1.7E-14 5.7E-19 159.8 13.6 188 523-736 40-227 (308)
79 4ay9_X Follicle-stimulating ho 99.5 1.1E-13 3.7E-18 156.5 20.1 238 884-1183 12-255 (350)
80 1p9a_G Platelet glycoprotein I 99.5 4.5E-14 1.6E-18 154.5 15.2 172 524-736 31-205 (290)
81 1wwl_A Monocyte differentiatio 99.5 1.4E-15 4.8E-20 169.2 3.0 56 1125-1185 252-307 (312)
82 1z7x_W Ribonuclease inhibitor; 99.5 5.6E-17 1.9E-21 192.3 -9.1 234 488-736 24-294 (461)
83 2o6q_A Variable lymphocyte rec 99.5 2.3E-13 7.9E-18 147.7 19.1 198 930-1163 17-217 (270)
84 3oja_A Leucine-rich immune mol 99.5 1.8E-14 6.1E-19 170.2 10.6 199 874-1112 51-250 (487)
85 2o6q_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 148.3 16.7 172 525-736 38-215 (270)
86 3rfs_A Internalin B, repeat mo 99.5 7.3E-14 2.5E-18 151.8 12.8 174 522-736 39-215 (272)
87 2z62_A TOLL-like receptor 4, v 99.5 1.4E-13 4.9E-18 150.1 15.0 199 525-737 29-235 (276)
88 2z62_A TOLL-like receptor 4, v 99.4 7.2E-13 2.5E-17 144.5 16.1 211 894-1166 19-239 (276)
89 2ast_B S-phase kinase-associat 99.4 9.2E-15 3.1E-19 165.1 0.8 202 524-766 70-282 (336)
90 4glp_A Monocyte differentiatio 99.4 4.8E-13 1.6E-17 148.5 14.0 149 991-1161 144-304 (310)
91 1h6t_A Internalin B; cell adhe 99.4 4.7E-13 1.6E-17 146.6 11.5 168 522-737 44-211 (291)
92 1h6u_A Internalin H; cell adhe 99.4 1.3E-12 4.3E-17 144.6 13.4 171 520-715 59-229 (308)
93 4glp_A Monocyte differentiatio 99.4 9.1E-13 3.1E-17 146.3 12.2 204 950-1185 89-305 (310)
94 3rfs_A Internalin B, repeat mo 99.4 1.5E-12 5E-17 141.5 13.2 176 900-1109 37-215 (272)
95 3m19_A Variable lymphocyte rec 99.3 6.3E-12 2.2E-16 134.6 15.0 170 525-736 15-189 (251)
96 1m9s_A Internalin B; cell inva 99.3 1.4E-12 4.8E-17 156.8 10.4 169 521-737 40-208 (605)
97 4ezg_A Putative uncharacterize 99.3 1.5E-12 5E-17 133.7 9.0 99 522-622 42-140 (197)
98 2ca6_A RAN GTPase-activating p 99.3 7.3E-14 2.5E-18 160.8 -1.3 87 518-605 26-133 (386)
99 3m19_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 132.4 15.9 176 930-1162 15-190 (251)
100 1w5s_A Origin recognition comp 99.3 7.4E-12 2.5E-16 145.6 14.5 268 142-425 53-371 (412)
101 2ast_B S-phase kinase-associat 99.3 3.8E-13 1.3E-17 151.8 2.9 182 520-736 89-282 (336)
102 2qen_A Walker-type ATPase; unk 99.3 7.2E-11 2.5E-15 133.9 19.3 267 141-442 33-348 (350)
103 2ca6_A RAN GTPase-activating p 99.3 3.4E-13 1.1E-17 155.2 -1.1 241 488-736 28-313 (386)
104 1xeu_A Internalin C; cellular 99.3 2.3E-12 7.9E-17 138.7 5.5 165 524-737 19-183 (263)
105 4ezg_A Putative uncharacterize 99.3 1.1E-11 3.6E-16 127.2 10.1 148 992-1161 44-191 (197)
106 3cvr_A Invasion plasmid antige 99.3 2.9E-11 9.8E-16 143.5 14.8 175 525-738 60-242 (571)
107 2o6s_A Variable lymphocyte rec 99.2 3E-11 1E-15 125.2 12.3 75 528-605 11-87 (208)
108 2v9t_B SLIT homolog 2 protein 99.2 5.7E-11 2E-15 123.9 13.9 93 527-623 14-109 (220)
109 3cvr_A Invasion plasmid antige 99.2 6.2E-11 2.1E-15 140.7 15.8 181 882-1143 60-247 (571)
110 1m9s_A Internalin B; cell inva 99.2 6.3E-12 2.2E-16 151.1 7.1 164 525-736 22-185 (605)
111 3e6j_A Variable lymphocyte rec 99.2 5.7E-11 1.9E-15 124.9 13.5 75 528-605 23-99 (229)
112 1h6t_A Internalin B; cell adhe 99.2 7.2E-11 2.4E-15 129.2 13.4 100 520-625 64-163 (291)
113 3goz_A Leucine-rich repeat-con 99.2 2.5E-12 8.5E-17 146.2 1.7 89 516-605 14-120 (362)
114 2fna_A Conserved hypothetical 99.2 3.8E-10 1.3E-14 128.3 19.6 268 141-441 32-355 (357)
115 1xeu_A Internalin C; cellular 99.2 4.8E-11 1.7E-15 128.3 11.2 99 520-625 37-135 (263)
116 3e6j_A Variable lymphocyte rec 99.2 1.5E-10 5E-15 121.7 14.0 138 1005-1163 31-171 (229)
117 2ell_A Acidic leucine-rich nuc 99.2 4.1E-11 1.4E-15 119.4 9.1 100 522-624 22-126 (168)
118 2v9t_B SLIT homolog 2 protein 99.2 2.3E-10 8E-15 119.2 14.2 138 1005-1162 23-163 (220)
119 2v70_A SLIT-2, SLIT homolog 2 99.2 1.5E-10 5E-15 120.8 12.4 93 527-623 14-110 (220)
120 3goz_A Leucine-rich repeat-con 99.1 7.1E-12 2.4E-16 142.4 2.1 87 518-605 44-149 (362)
121 2v70_A SLIT-2, SLIT homolog 2 99.1 4.7E-10 1.6E-14 117.0 14.4 128 1017-1162 33-164 (220)
122 2je0_A Acidic leucine-rich nuc 99.1 6E-11 2.1E-15 115.4 6.7 98 524-624 17-119 (149)
123 2ell_A Acidic leucine-rich nuc 99.1 1.2E-10 4E-15 116.0 8.6 109 517-628 42-157 (168)
124 2je0_A Acidic leucine-rich nuc 99.1 8E-11 2.7E-15 114.5 6.7 106 517-625 35-147 (149)
125 4b8c_D Glucose-repressible alc 99.1 1.1E-10 3.8E-15 144.3 8.4 109 515-625 215-323 (727)
126 2xot_A Amphoterin-induced prot 99.1 2.2E-10 7.4E-15 129.9 9.6 169 527-736 21-199 (361)
127 2o6s_A Variable lymphocyte rec 99.1 5.1E-10 1.8E-14 115.9 11.3 152 993-1169 29-183 (208)
128 1a9n_A U2A', U2A'; complex (nu 99.0 2.4E-10 8.2E-15 114.6 8.0 99 524-625 42-147 (176)
129 1dce_A Protein (RAB geranylger 99.0 2.3E-10 7.9E-15 136.8 9.2 97 525-625 442-540 (567)
130 1a9n_A U2A', U2A'; complex (nu 99.0 2.2E-10 7.5E-15 114.9 7.5 131 520-659 15-149 (176)
131 2xot_A Amphoterin-induced prot 99.0 6.1E-10 2.1E-14 126.2 11.2 133 1014-1162 62-200 (361)
132 2wfh_A SLIT homolog 2 protein 99.0 1.3E-09 4.3E-14 110.9 11.9 81 527-611 13-94 (193)
133 3sb4_A Hypothetical leucine ri 99.0 1.5E-09 5E-14 121.4 12.9 179 991-1180 100-327 (329)
134 2qby_B CDC6 homolog 3, cell di 99.0 3.7E-08 1.3E-12 112.9 24.2 262 140-425 46-339 (384)
135 3sb4_A Hypothetical leucine ri 99.0 3.1E-09 1.1E-13 118.7 13.7 238 880-1158 48-328 (329)
136 2wfh_A SLIT homolog 2 protein 99.0 3.2E-09 1.1E-13 107.8 12.2 126 1019-1163 13-138 (193)
137 2v1u_A Cell division control p 98.9 3.4E-08 1.1E-12 113.5 22.2 268 140-425 45-351 (387)
138 1w8a_A SLIT protein; signaling 98.9 1.7E-09 5.7E-14 110.0 9.9 98 525-623 30-131 (192)
139 4b8c_D Glucose-repressible alc 98.9 5.8E-10 2E-14 137.8 7.5 96 527-624 204-299 (727)
140 1ds9_A Outer arm dynein; leuci 98.9 2E-11 6.9E-16 125.2 -6.2 68 536-605 37-104 (198)
141 1fnn_A CDC6P, cell division co 98.9 2.1E-07 7.2E-12 106.9 26.6 267 141-425 46-351 (389)
142 1w8a_A SLIT protein; signaling 98.9 2.4E-09 8.1E-14 108.9 8.6 94 527-624 11-108 (192)
143 1dce_A Protein (RAB geranylger 98.9 2.3E-09 7.9E-14 128.1 9.4 101 520-623 459-565 (567)
144 4fdw_A Leucine rich hypothetic 98.9 7.1E-08 2.4E-12 109.9 20.9 236 876-1181 131-377 (401)
145 2r9u_A Variable lymphocyte rec 98.9 4E-09 1.4E-13 105.0 8.8 93 527-623 15-110 (174)
146 2qby_A CDC6 homolog 1, cell di 98.8 5.8E-08 2E-12 111.5 19.3 266 140-424 46-347 (386)
147 2o6r_A Variable lymphocyte rec 98.8 9.3E-09 3.2E-13 103.1 11.0 83 526-612 9-93 (177)
148 3g39_A Variable lymphocyte rec 98.8 5.2E-09 1.8E-13 103.9 8.7 95 526-624 11-108 (170)
149 2o6r_A Variable lymphocyte rec 98.8 2.1E-08 7.3E-13 100.5 12.1 128 1018-1164 9-137 (177)
150 2r9u_A Variable lymphocyte rec 98.8 4E-09 1.4E-13 105.0 6.2 89 524-614 33-124 (174)
151 1ds9_A Outer arm dynein; leuci 98.8 2E-10 6.7E-15 117.8 -4.0 103 518-624 42-146 (198)
152 1hqc_A RUVB; extended AAA-ATPa 98.8 1.1E-07 3.8E-12 106.0 17.2 241 140-424 39-324 (324)
153 1njg_A DNA polymerase III subu 98.7 8.2E-08 2.8E-12 102.4 14.9 105 216-324 125-231 (250)
154 4fdw_A Leucine rich hypothetic 98.7 3.9E-07 1.3E-11 103.7 18.9 171 988-1184 176-355 (401)
155 3g39_A Variable lymphocyte rec 98.7 2.7E-08 9.1E-13 98.7 8.1 81 524-605 30-113 (170)
156 2chg_A Replication factor C sm 98.6 4.4E-07 1.5E-11 94.9 15.0 161 142-321 41-204 (226)
157 4fs7_A Uncharacterized protein 98.4 1.6E-06 5.5E-11 99.3 15.4 81 1072-1160 295-375 (394)
158 2ifg_A High affinity nerve gro 98.4 3.2E-07 1.1E-11 103.3 8.5 81 530-613 14-98 (347)
159 1sxj_B Activator 1 37 kDa subu 98.4 9.7E-07 3.3E-11 98.3 12.2 163 142-323 45-212 (323)
160 2ifg_A High affinity nerve gro 98.4 4.1E-07 1.4E-11 102.5 7.8 85 520-605 27-114 (347)
161 3qfl_A MLA10; coiled-coil, (CC 98.3 2.4E-07 8.3E-12 83.3 4.3 56 11-66 2-83 (115)
162 4fs7_A Uncharacterized protein 98.2 2.4E-05 8.2E-10 89.5 17.3 278 875-1182 65-374 (394)
163 4gt6_A Cell surface protein; l 98.1 0.00017 5.7E-09 82.4 20.9 127 876-1025 58-191 (394)
164 1iqp_A RFCS; clamp loader, ext 98.0 1.2E-05 4E-10 89.6 9.9 156 142-322 49-213 (327)
165 4gt6_A Cell surface protein; l 97.9 0.00023 8E-09 81.2 19.4 253 875-1161 81-367 (394)
166 3un9_A NLR family member X1; l 97.9 1E-06 3.5E-11 99.2 -1.9 81 524-605 72-166 (372)
167 2chq_A Replication factor C sm 97.9 7.9E-05 2.7E-09 82.5 13.3 157 142-320 41-203 (319)
168 3e4g_A ATP synthase subunit S, 97.9 2.6E-06 9E-11 82.6 1.0 11 1040-1050 62-72 (176)
169 2ra8_A Uncharacterized protein 97.9 4.1E-06 1.4E-10 93.4 2.6 63 1097-1161 250-317 (362)
170 3te6_A Regulatory protein SIR3 97.8 0.00037 1.3E-08 75.1 17.5 144 142-288 48-212 (318)
171 3pfi_A Holliday junction ATP-d 97.8 0.00068 2.3E-08 75.5 20.4 149 141-320 57-226 (338)
172 2z4s_A Chromosomal replication 97.8 5.8E-05 2E-09 86.8 11.8 158 141-318 132-303 (440)
173 1jr3_A DNA polymerase III subu 97.8 0.00014 4.7E-09 82.5 13.6 102 216-321 118-221 (373)
174 4h09_A Hypothetical leucine ri 97.8 0.00084 2.9E-08 76.1 20.1 133 1012-1168 213-348 (379)
175 3bos_A Putative DNA replicatio 97.8 1.1E-05 3.8E-10 85.3 3.7 150 141-320 54-216 (242)
176 3rw6_A Nuclear RNA export fact 97.6 4.3E-05 1.5E-09 80.3 5.5 79 521-600 167-257 (267)
177 3e4g_A ATP synthase subunit S, 97.6 3.7E-05 1.3E-09 74.5 4.1 67 877-943 81-153 (176)
178 2ra8_A Uncharacterized protein 97.6 3.9E-05 1.3E-09 85.4 4.5 59 542-602 167-227 (362)
179 3syl_A Protein CBBX; photosynt 97.5 0.00063 2.1E-08 74.7 14.1 131 141-289 69-219 (309)
180 1a5t_A Delta prime, HOLB; zinc 97.5 0.00068 2.3E-08 75.0 14.3 96 216-320 107-204 (334)
181 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00078 2.7E-08 71.9 13.8 157 140-318 40-219 (262)
182 3pvs_A Replication-associated 97.5 0.00081 2.8E-08 77.0 14.1 152 142-318 53-212 (447)
183 3rw6_A Nuclear RNA export fact 97.5 1.9E-05 6.5E-10 83.0 0.3 97 529-627 148-260 (267)
184 3h4m_A Proteasome-activating n 97.5 0.00051 1.8E-08 74.3 11.7 154 141-318 53-228 (285)
185 1d2n_A N-ethylmaleimide-sensit 97.4 0.0014 4.7E-08 70.2 14.5 170 142-339 67-260 (272)
186 1l8q_A Chromosomal replication 97.4 0.00017 5.7E-09 79.8 7.2 153 141-316 39-203 (324)
187 4h09_A Hypothetical leucine ri 97.4 0.0055 1.9E-07 69.3 19.8 267 877-1181 42-340 (379)
188 1sxj_D Activator 1 41 kDa subu 97.4 0.00081 2.8E-08 75.4 12.3 169 142-320 61-234 (353)
189 1sxj_A Activator 1 95 kDa subu 97.4 0.00038 1.3E-08 82.1 9.8 167 140-321 78-253 (516)
190 1sxj_E Activator 1 40 kDa subu 97.4 0.00074 2.5E-08 75.8 11.8 103 216-321 133-237 (354)
191 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.0089 3.1E-07 65.4 19.6 160 140-321 46-223 (322)
192 1io0_A Tropomodulin; LRR prote 97.3 7E-05 2.4E-09 74.9 2.2 90 515-605 27-134 (185)
193 3uk6_A RUVB-like 2; hexameric 97.3 0.00095 3.3E-08 75.3 11.9 95 219-318 191-300 (368)
194 3ec2_A DNA replication protein 97.2 0.00019 6.4E-09 71.5 4.2 101 140-257 39-143 (180)
195 1io0_A Tropomodulin; LRR prote 97.2 0.00036 1.2E-08 69.7 5.7 113 488-605 32-162 (185)
196 2qp9_X Vacuolar protein sortin 97.2 0.0035 1.2E-07 69.8 14.3 158 140-320 85-260 (355)
197 3eie_A Vacuolar protein sortin 97.1 0.009 3.1E-07 65.5 17.4 158 140-321 52-228 (322)
198 3d8b_A Fidgetin-like protein 1 97.1 0.0095 3.2E-07 66.4 17.1 158 140-321 118-295 (357)
199 2w58_A DNAI, primosome compone 97.1 0.00027 9.1E-09 72.0 3.8 100 140-256 55-158 (202)
200 3un9_A NLR family member X1; l 97.1 0.00023 7.8E-09 80.0 3.4 82 523-605 154-250 (372)
201 3n70_A Transport activator; si 97.1 0.00091 3.1E-08 63.6 7.1 90 141-256 26-115 (145)
202 1jbk_A CLPB protein; beta barr 97.0 0.00046 1.6E-08 69.6 5.2 22 141-162 45-66 (195)
203 3u61_B DNA polymerase accessor 97.0 0.0023 7.8E-08 70.7 10.6 147 143-318 52-213 (324)
204 2zan_A Vacuolar protein sortin 96.9 0.0087 3E-07 68.7 15.4 159 140-320 168-344 (444)
205 3b9p_A CG5977-PA, isoform A; A 96.9 0.017 5.7E-07 62.6 16.9 157 140-320 55-232 (297)
206 3cf0_A Transitional endoplasmi 96.9 0.0097 3.3E-07 64.5 14.3 152 140-315 50-222 (301)
207 4b4t_J 26S protease regulatory 96.9 0.0064 2.2E-07 67.2 12.7 151 139-313 182-353 (405)
208 3vfd_A Spastin; ATPase, microt 96.8 0.023 8E-07 64.1 17.6 158 140-320 149-325 (389)
209 1sxj_C Activator 1 40 kDa subu 96.8 0.0066 2.2E-07 67.3 12.6 152 142-318 49-209 (340)
210 4b4t_K 26S protease regulatory 96.8 0.0043 1.5E-07 69.7 10.9 178 102-313 176-378 (428)
211 4b4t_L 26S protease subunit RP 96.7 0.0086 2.9E-07 67.4 12.5 178 102-313 185-386 (437)
212 2gno_A DNA polymerase III, gam 96.6 0.0047 1.6E-07 66.6 9.2 127 143-287 22-152 (305)
213 2kjq_A DNAA-related protein; s 96.6 0.00054 1.8E-08 65.3 1.5 36 141-177 38-73 (149)
214 4b4t_M 26S protease regulatory 96.5 0.0096 3.3E-07 66.9 10.6 151 139-313 215-386 (434)
215 4b4t_I 26S protease regulatory 96.4 0.014 4.8E-07 64.7 11.6 177 102-313 186-387 (437)
216 3hu3_A Transitional endoplasmi 96.4 0.0092 3.1E-07 69.0 10.3 156 140-319 239-413 (489)
217 4b4t_H 26S protease regulatory 96.3 0.016 5.5E-07 64.9 11.4 151 139-313 243-414 (467)
218 3co5_A Putative two-component 96.3 0.0036 1.2E-07 59.2 5.2 86 141-256 29-115 (143)
219 1in4_A RUVB, holliday junction 96.2 0.044 1.5E-06 60.3 14.3 47 268-318 174-220 (334)
220 1lv7_A FTSH; alpha/beta domain 96.1 0.048 1.6E-06 57.5 13.5 128 141-287 47-195 (257)
221 2ce7_A Cell division protein F 96.1 0.019 6.4E-07 65.8 10.5 149 142-314 52-221 (476)
222 2r62_A Cell division protease 95.9 0.0054 1.9E-07 65.4 5.0 128 141-287 46-196 (268)
223 4fcw_A Chaperone protein CLPB; 95.9 0.014 4.7E-07 63.8 8.3 93 141-241 49-143 (311)
224 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0042 1.5E-07 66.0 3.5 65 142-227 126-192 (331)
225 2x8a_A Nuclear valosin-contain 95.7 0.094 3.2E-06 55.6 13.7 126 142-287 47-191 (274)
226 3t15_A Ribulose bisphosphate c 95.6 0.013 4.3E-07 63.2 6.3 24 140-163 37-60 (293)
227 1qvr_A CLPB protein; coiled co 95.6 0.021 7E-07 71.8 9.0 131 140-286 192-344 (854)
228 1ofh_A ATP-dependent HSL prote 95.5 0.057 1.9E-06 58.8 11.4 23 140-162 51-73 (310)
229 2p65_A Hypothetical protein PF 95.5 0.0082 2.8E-07 59.8 4.0 22 141-162 45-66 (187)
230 2bjv_A PSP operon transcriptio 95.4 0.023 7.8E-07 60.3 7.5 22 141-162 31-52 (265)
231 3cf2_A TER ATPase, transitiona 95.3 0.053 1.8E-06 65.9 11.0 152 139-314 238-407 (806)
232 2c9o_A RUVB-like 1; hexameric 95.3 0.074 2.5E-06 61.3 11.9 95 220-319 298-408 (456)
233 3pxg_A Negative regulator of g 95.3 0.042 1.4E-06 63.5 9.8 122 142-287 204-338 (468)
234 3pxi_A Negative regulator of g 95.1 0.013 4.4E-07 72.8 4.7 126 142-287 524-675 (758)
235 1jr3_D DNA polymerase III, del 95.0 0.13 4.5E-06 56.8 12.3 152 143-319 22-183 (343)
236 1ojl_A Transcriptional regulat 95.0 0.047 1.6E-06 59.0 8.3 22 141-162 27-48 (304)
237 3rfe_A Platelet glycoprotein I 95.0 0.026 8.8E-07 52.0 5.3 54 527-582 11-67 (130)
238 2qgz_A Helicase loader, putati 94.9 0.0047 1.6E-07 67.0 0.3 36 140-176 153-189 (308)
239 2cvh_A DNA repair and recombin 94.6 0.085 2.9E-06 54.0 8.8 42 141-186 22-63 (220)
240 1r6b_X CLPA protein; AAA+, N-t 94.6 0.14 4.7E-06 63.6 12.2 131 142-287 210-362 (758)
241 2r6a_A DNAB helicase, replicat 94.5 0.34 1.2E-05 55.6 14.6 49 140-190 204-252 (454)
242 3pxi_A Negative regulator of g 94.4 0.084 2.9E-06 65.4 9.8 123 142-287 204-338 (758)
243 2q6t_A DNAB replication FORK h 94.3 0.36 1.2E-05 55.3 14.1 50 141-192 202-251 (444)
244 3m6a_A ATP-dependent protease 94.2 0.056 1.9E-06 63.6 7.2 22 141-162 110-131 (543)
245 1ixz_A ATP-dependent metallopr 94.2 0.29 9.8E-06 51.3 12.0 127 142-287 52-199 (254)
246 1iy2_A ATP-dependent metallopr 93.8 0.21 7.2E-06 53.2 10.0 127 142-287 76-223 (278)
247 3io5_A Recombination and repai 93.6 0.1 3.5E-06 55.2 6.9 81 142-227 31-121 (333)
248 1xp8_A RECA protein, recombina 93.5 0.13 4.3E-06 56.8 7.8 82 140-227 75-162 (366)
249 1g5t_A COB(I)alamin adenosyltr 93.5 0.093 3.2E-06 51.5 5.9 117 141-258 30-164 (196)
250 1u94_A RECA protein, recombina 93.5 0.11 3.7E-06 57.2 7.2 82 140-227 64-151 (356)
251 2b8t_A Thymidine kinase; deoxy 93.5 0.019 6.5E-07 58.3 1.1 110 142-258 15-127 (223)
252 3rfe_A Platelet glycoprotein I 93.4 0.076 2.6E-06 48.8 5.0 39 1124-1163 29-67 (130)
253 1r6b_X CLPA protein; AAA+, N-t 93.4 0.068 2.3E-06 66.4 6.2 105 142-256 491-607 (758)
254 1n0w_A DNA repair protein RAD5 93.3 0.12 4.2E-06 53.7 7.2 53 141-194 26-83 (243)
255 3hr8_A Protein RECA; alpha and 93.2 0.16 5.4E-06 55.6 7.9 83 140-228 62-150 (356)
256 2dhr_A FTSH; AAA+ protein, hex 93.2 0.28 9.5E-06 56.5 10.3 123 142-287 67-214 (499)
257 2w0m_A SSO2452; RECA, SSPF, un 93.1 0.12 4.3E-06 53.3 6.9 114 140-257 24-168 (235)
258 2zr9_A Protein RECA, recombina 93.1 0.14 4.9E-06 56.2 7.5 83 140-228 62-150 (349)
259 1um8_A ATP-dependent CLP prote 92.9 0.31 1.1E-05 54.5 10.2 23 140-162 73-95 (376)
260 1v5w_A DMC1, meiotic recombina 92.7 0.28 9.5E-06 53.9 9.1 53 141-194 124-181 (343)
261 2z43_A DNA repair and recombin 92.7 0.18 6.3E-06 54.9 7.6 54 140-194 108-166 (324)
262 1qvr_A CLPB protein; coiled co 92.6 0.12 3.9E-06 65.0 6.5 106 142-256 591-710 (854)
263 2r44_A Uncharacterized protein 92.4 0.12 4E-06 56.8 5.7 129 142-288 49-199 (331)
264 2px0_A Flagellar biosynthesis 92.3 0.17 5.9E-06 54.0 6.5 85 139-226 105-191 (296)
265 1ex7_A Guanylate kinase; subst 92.2 0.059 2E-06 52.9 2.6 23 140-162 2-24 (186)
266 1cr0_A DNA primase/helicase; R 91.4 0.21 7.2E-06 53.8 6.1 22 141-162 37-58 (296)
267 2i1q_A DNA repair and recombin 91.3 0.24 8.1E-06 54.1 6.5 53 141-194 100-167 (322)
268 1qhx_A CPT, protein (chloramph 91.2 0.074 2.5E-06 52.3 2.0 23 140-162 4-26 (178)
269 1ypw_A Transitional endoplasmi 90.9 0.66 2.3E-05 57.3 10.6 129 140-287 239-385 (806)
270 3lw7_A Adenylate kinase relate 90.7 0.084 2.9E-06 51.7 2.0 19 141-159 3-21 (179)
271 3cf2_A TER ATPase, transitiona 90.6 0.59 2E-05 56.8 9.5 129 140-287 512-661 (806)
272 3ice_A Transcription terminati 90.5 0.079 2.7E-06 57.5 1.5 80 143-226 178-270 (422)
273 1sky_E F1-ATPase, F1-ATP synth 90.3 0.31 1.1E-05 54.9 6.2 84 143-226 155-254 (473)
274 1kag_A SKI, shikimate kinase I 90.3 0.12 4.3E-06 50.3 2.8 23 140-162 5-27 (173)
275 3bh0_A DNAB-like replicative h 90.2 0.56 1.9E-05 50.7 8.1 49 141-192 70-118 (315)
276 3kb2_A SPBC2 prophage-derived 90.0 0.1 3.4E-06 50.9 1.8 22 141-162 3-24 (173)
277 1ly1_A Polynucleotide kinase; 90.0 0.093 3.2E-06 51.6 1.5 21 141-161 4-24 (181)
278 3vaa_A Shikimate kinase, SK; s 89.7 0.12 4.1E-06 51.8 2.1 23 140-162 26-48 (199)
279 2xxa_A Signal recognition part 89.7 0.4 1.4E-05 54.2 6.6 26 138-163 99-124 (433)
280 1kgd_A CASK, peripheral plasma 89.7 0.14 4.7E-06 50.4 2.5 23 140-162 6-28 (180)
281 2ck3_D ATP synthase subunit be 89.7 0.82 2.8E-05 51.3 8.9 84 143-226 157-262 (482)
282 2qor_A Guanylate kinase; phosp 89.6 0.15 5.1E-06 51.4 2.7 24 139-162 12-35 (204)
283 3bgw_A DNAB-like replicative h 89.6 1.6 5.5E-05 49.5 11.6 49 141-192 199-247 (444)
284 3t61_A Gluconokinase; PSI-biol 89.5 0.14 4.7E-06 51.5 2.4 23 140-162 19-41 (202)
285 3trf_A Shikimate kinase, SK; a 89.5 0.12 4.2E-06 51.0 2.0 22 141-162 7-28 (185)
286 3a00_A Guanylate kinase, GMP k 89.5 0.16 5.3E-06 50.3 2.7 23 140-162 2-24 (186)
287 3iij_A Coilin-interacting nucl 89.3 0.17 5.8E-06 49.7 2.9 23 140-162 12-34 (180)
288 1zp6_A Hypothetical protein AT 89.3 0.15 5E-06 50.8 2.4 22 141-162 11-32 (191)
289 1via_A Shikimate kinase; struc 89.2 0.15 5.2E-06 49.8 2.4 22 141-162 6-27 (175)
290 1vma_A Cell division protein F 88.8 0.59 2E-05 50.0 6.8 86 139-226 104-195 (306)
291 2orw_A Thymidine kinase; TMTK, 88.8 0.032 1.1E-06 55.1 -2.9 22 141-162 5-26 (184)
292 1j8m_F SRP54, signal recogniti 88.7 0.44 1.5E-05 50.9 5.6 87 139-226 98-189 (297)
293 2iyv_A Shikimate kinase, SK; t 88.6 0.18 6.1E-06 49.8 2.5 22 141-162 4-25 (184)
294 1fx0_B ATP synthase beta chain 88.6 0.81 2.8E-05 51.6 7.9 84 143-226 169-275 (498)
295 1pgv_A TMD-1, tropomodulin TMD 88.5 0.34 1.2E-05 47.7 4.3 88 516-604 33-136 (197)
296 1lvg_A Guanylate kinase, GMP k 88.4 0.2 6.8E-06 50.1 2.6 22 140-161 5-26 (198)
297 1kht_A Adenylate kinase; phosp 88.3 0.17 5.7E-06 50.3 2.0 22 141-162 5-26 (192)
298 3lda_A DNA repair protein RAD5 88.1 0.94 3.2E-05 50.5 8.1 54 140-194 179-237 (400)
299 4eun_A Thermoresistant glucoki 88.1 0.2 6.7E-06 50.3 2.4 23 140-162 30-52 (200)
300 2cdn_A Adenylate kinase; phosp 88.1 0.2 6.9E-06 50.2 2.4 23 140-162 21-43 (201)
301 2ffh_A Protein (FFH); SRP54, s 88.0 0.65 2.2E-05 52.0 6.7 25 138-162 97-121 (425)
302 3dm5_A SRP54, signal recogniti 88.0 0.65 2.2E-05 52.2 6.7 23 139-161 100-122 (443)
303 2rhm_A Putative kinase; P-loop 87.9 0.17 5.7E-06 50.4 1.7 22 141-162 7-28 (193)
304 1e6c_A Shikimate kinase; phosp 87.9 0.21 7.1E-06 48.6 2.4 22 141-162 4-25 (173)
305 1nks_A Adenylate kinase; therm 87.6 0.2 6.7E-06 49.9 2.1 21 142-162 4-24 (194)
306 3uie_A Adenylyl-sulfate kinase 87.6 0.22 7.4E-06 50.0 2.3 22 141-162 27-48 (200)
307 1pzn_A RAD51, DNA repair and r 87.5 1.2 4.1E-05 48.8 8.5 52 140-192 132-188 (349)
308 1y63_A LMAJ004144AAA protein; 87.5 0.23 7.8E-06 49.0 2.4 22 140-161 11-32 (184)
309 1ye8_A Protein THEP1, hypothet 87.5 0.22 7.7E-06 48.6 2.3 21 142-162 3-23 (178)
310 3ney_A 55 kDa erythrocyte memb 87.4 0.25 8.6E-06 48.8 2.6 25 138-162 18-42 (197)
311 1ypw_A Transitional endoplasmi 87.3 0.16 5.4E-06 62.9 1.3 23 141-163 513-535 (806)
312 4gp7_A Metallophosphoesterase; 87.3 0.21 7.3E-06 48.5 2.0 21 141-161 11-31 (171)
313 2jaq_A Deoxyguanosine kinase; 87.2 0.21 7.3E-06 50.2 2.1 21 142-162 3-23 (205)
314 3tau_A Guanylate kinase, GMP k 87.2 0.23 8E-06 50.0 2.4 23 140-162 9-31 (208)
315 1knq_A Gluconate kinase; ALFA/ 87.2 0.24 8.1E-06 48.4 2.3 21 141-161 10-30 (175)
316 1zuh_A Shikimate kinase; alpha 87.2 0.21 7.1E-06 48.4 1.8 22 141-162 9-30 (168)
317 3tr0_A Guanylate kinase, GMP k 87.1 0.22 7.6E-06 50.1 2.1 22 140-161 8-29 (205)
318 2c95_A Adenylate kinase 1; tra 87.0 0.22 7.7E-06 49.6 2.1 23 140-162 10-32 (196)
319 3kl4_A SRP54, signal recogniti 86.8 0.58 2E-05 52.5 5.4 24 139-162 97-120 (433)
320 3c8u_A Fructokinase; YP_612366 86.7 0.22 7.5E-06 50.3 1.8 22 140-161 23-44 (208)
321 2j41_A Guanylate kinase; GMP, 86.7 0.27 9.2E-06 49.5 2.5 23 140-162 7-29 (207)
322 2vli_A Antibiotic resistance p 86.7 0.16 5.6E-06 49.9 0.8 23 140-162 6-28 (183)
323 3cmu_A Protein RECA, recombina 86.7 0.86 2.9E-05 60.8 7.6 82 140-227 1428-1515(2050)
324 1ukz_A Uridylate kinase; trans 86.7 0.25 8.7E-06 49.6 2.3 23 140-162 16-38 (203)
325 2bwj_A Adenylate kinase 5; pho 86.7 0.23 7.9E-06 49.7 1.9 23 140-162 13-35 (199)
326 1tev_A UMP-CMP kinase; ploop, 86.6 0.2 6.9E-06 49.9 1.5 22 141-162 5-26 (196)
327 3e70_C DPA, signal recognition 86.6 1.3 4.6E-05 47.8 8.0 24 139-162 129-152 (328)
328 2bbw_A Adenylate kinase 4, AK4 86.5 0.26 8.8E-06 51.3 2.2 22 140-161 28-49 (246)
329 2qt1_A Nicotinamide riboside k 86.5 0.29 9.9E-06 49.3 2.6 23 140-162 22-44 (207)
330 2bdt_A BH3686; alpha-beta prot 86.4 0.27 9.3E-06 48.7 2.3 20 142-161 5-24 (189)
331 1zak_A Adenylate kinase; ATP:A 86.4 0.3 1E-05 49.9 2.7 23 140-162 6-28 (222)
332 1z6g_A Guanylate kinase; struc 86.4 0.3 1E-05 49.7 2.6 22 140-161 24-45 (218)
333 2pt5_A Shikimate kinase, SK; a 86.4 0.26 8.8E-06 47.7 2.1 21 142-162 3-23 (168)
334 2if2_A Dephospho-COA kinase; a 86.4 0.25 8.7E-06 49.6 2.0 20 142-161 4-23 (204)
335 2qtf_A Protein HFLX, GTP-bindi 86.3 0.61 2.1E-05 51.5 5.2 58 100-163 146-203 (364)
336 3jvv_A Twitching mobility prot 86.3 0.18 6.2E-06 55.4 0.9 109 141-260 125-234 (356)
337 4a1f_A DNAB helicase, replicat 86.1 1.3 4.4E-05 48.0 7.5 50 141-193 48-97 (338)
338 2yvu_A Probable adenylyl-sulfa 86.0 0.3 1E-05 48.3 2.3 24 140-163 14-37 (186)
339 2ze6_A Isopentenyl transferase 85.9 0.29 1E-05 51.1 2.3 21 142-162 4-24 (253)
340 3cm0_A Adenylate kinase; ATP-b 85.9 0.3 1E-05 48.2 2.3 20 142-161 7-26 (186)
341 2pt7_A CAG-ALFA; ATPase, prote 85.9 1.4 4.7E-05 47.9 7.7 104 141-258 173-276 (330)
342 1aky_A Adenylate kinase; ATP:A 85.8 0.29 9.7E-06 50.0 2.1 22 141-162 6-27 (220)
343 1cke_A CK, MSSA, protein (cyti 85.8 0.29 9.9E-06 50.2 2.2 21 141-161 7-27 (227)
344 3vr4_D V-type sodium ATPase su 85.7 0.82 2.8E-05 51.0 5.8 85 142-226 154-257 (465)
345 2c61_A A-type ATP synthase non 85.7 0.79 2.7E-05 51.5 5.7 84 143-226 156-258 (469)
346 1uf9_A TT1252 protein; P-loop, 85.6 0.26 8.9E-06 49.4 1.7 23 140-162 9-31 (203)
347 3a4m_A L-seryl-tRNA(SEC) kinas 85.6 0.31 1.1E-05 51.2 2.3 22 141-162 6-27 (260)
348 1jjv_A Dephospho-COA kinase; P 85.5 0.33 1.1E-05 48.8 2.4 21 141-161 4-24 (206)
349 1q57_A DNA primase/helicase; d 85.5 1.8 6.1E-05 50.4 9.0 51 141-193 244-294 (503)
350 3nwj_A ATSK2; P loop, shikimat 85.5 0.35 1.2E-05 50.1 2.6 23 140-162 49-71 (250)
351 2wwf_A Thymidilate kinase, put 85.3 0.37 1.3E-05 48.7 2.7 24 140-163 11-34 (212)
352 3tqc_A Pantothenate kinase; bi 85.3 0.84 2.9E-05 49.1 5.5 23 139-161 92-114 (321)
353 3fwy_A Light-independent proto 85.3 0.28 9.7E-06 52.8 1.8 24 138-161 47-70 (314)
354 1qf9_A UMP/CMP kinase, protein 85.3 0.3 1E-05 48.5 1.9 23 140-162 7-29 (194)
355 3asz_A Uridine kinase; cytidin 85.3 0.33 1.1E-05 49.0 2.3 21 141-161 8-28 (211)
356 1xjc_A MOBB protein homolog; s 85.2 0.35 1.2E-05 46.4 2.2 24 140-163 5-28 (169)
357 1znw_A Guanylate kinase, GMP k 85.2 0.32 1.1E-05 49.0 2.1 22 140-161 21-42 (207)
358 1zd8_A GTP:AMP phosphotransfer 85.0 0.32 1.1E-05 49.9 2.0 23 140-162 8-30 (227)
359 2plr_A DTMP kinase, probable t 85.0 0.33 1.1E-05 49.1 2.1 22 141-162 6-27 (213)
360 2qe7_A ATP synthase subunit al 84.9 1.5 5E-05 49.6 7.4 81 143-226 166-263 (502)
361 3gqb_B V-type ATP synthase bet 84.8 0.89 3E-05 50.7 5.5 84 143-226 151-260 (464)
362 1ls1_A Signal recognition part 84.7 0.9 3.1E-05 48.5 5.4 25 138-162 97-121 (295)
363 1nn5_A Similar to deoxythymidy 84.6 0.35 1.2E-05 49.0 2.1 24 140-163 10-33 (215)
364 2pbr_A DTMP kinase, thymidylat 84.6 0.35 1.2E-05 48.1 2.1 21 142-162 3-23 (195)
365 1s96_A Guanylate kinase, GMP k 84.6 0.36 1.2E-05 49.0 2.1 23 140-162 17-39 (219)
366 1odf_A YGR205W, hypothetical 3 84.5 0.36 1.2E-05 51.4 2.2 23 140-162 32-54 (290)
367 4e22_A Cytidylate kinase; P-lo 84.4 0.38 1.3E-05 50.2 2.3 22 140-161 28-49 (252)
368 2i3b_A HCR-ntpase, human cance 84.3 0.44 1.5E-05 46.9 2.6 22 141-162 3-24 (189)
369 2r9v_A ATP synthase subunit al 84.0 1.1 3.9E-05 50.5 5.9 80 144-226 180-276 (515)
370 3aez_A Pantothenate kinase; tr 84.0 0.36 1.2E-05 52.0 1.9 22 140-161 91-112 (312)
371 1gvn_B Zeta; postsegregational 84.0 0.31 1.1E-05 51.9 1.4 23 140-162 34-56 (287)
372 3l0o_A Transcription terminati 83.8 1.3 4.3E-05 48.2 5.9 35 144-179 180-216 (427)
373 2grj_A Dephospho-COA kinase; T 83.8 0.41 1.4E-05 47.4 2.1 21 141-161 14-34 (192)
374 3fb4_A Adenylate kinase; psych 83.8 0.4 1.4E-05 48.7 2.1 21 142-162 3-23 (216)
375 1rj9_A FTSY, signal recognitio 83.8 0.45 1.6E-05 50.9 2.6 23 139-161 102-124 (304)
376 1htw_A HI0065; nucleotide-bind 83.7 0.4 1.4E-05 45.6 1.9 21 141-161 35-55 (158)
377 2z0h_A DTMP kinase, thymidylat 83.7 0.4 1.4E-05 47.7 2.1 21 142-162 3-23 (197)
378 1rz3_A Hypothetical protein rb 83.6 0.44 1.5E-05 47.7 2.3 22 140-161 23-44 (201)
379 3dl0_A Adenylate kinase; phosp 83.6 0.41 1.4E-05 48.6 2.1 21 142-162 3-23 (216)
380 2v54_A DTMP kinase, thymidylat 83.5 0.42 1.4E-05 47.9 2.1 23 140-162 5-27 (204)
381 1gtv_A TMK, thymidylate kinase 83.4 0.23 8E-06 50.3 0.1 21 142-162 3-23 (214)
382 2jeo_A Uridine-cytidine kinase 83.3 0.41 1.4E-05 49.7 1.9 21 141-161 27-47 (245)
383 3e1s_A Exodeoxyribonuclease V, 83.1 0.81 2.8E-05 54.0 4.6 104 140-255 205-314 (574)
384 1pgv_A TMD-1, tropomodulin TMD 83.0 0.73 2.5E-05 45.4 3.5 90 516-605 62-168 (197)
385 2f6r_A COA synthase, bifunctio 83.0 0.43 1.5E-05 50.7 2.0 21 140-160 76-96 (281)
386 1uj2_A Uridine-cytidine kinase 82.9 0.39 1.3E-05 50.2 1.6 23 140-162 23-45 (252)
387 2j37_W Signal recognition part 82.9 1.9 6.4E-05 49.5 7.4 23 139-161 101-123 (504)
388 2pez_A Bifunctional 3'-phospho 82.9 0.46 1.6E-05 46.5 2.1 22 141-162 7-28 (179)
389 1tue_A Replication protein E1; 82.8 0.38 1.3E-05 47.3 1.3 21 142-162 61-81 (212)
390 3oaa_A ATP synthase subunit al 82.7 2.5 8.4E-05 47.6 7.9 81 143-226 166-263 (513)
391 1e4v_A Adenylate kinase; trans 82.6 0.47 1.6E-05 48.1 2.1 21 142-162 3-23 (214)
392 2yhs_A FTSY, cell division pro 82.2 1.5 5.1E-05 49.7 6.1 40 140-181 294-333 (503)
393 1sgw_A Putative ABC transporte 82.2 0.57 1.9E-05 47.2 2.4 23 140-162 36-58 (214)
394 1m7g_A Adenylylsulfate kinase; 82.2 0.5 1.7E-05 47.7 2.1 22 141-162 27-48 (211)
395 3be4_A Adenylate kinase; malar 82.2 0.5 1.7E-05 48.0 2.0 21 142-162 8-28 (217)
396 3r20_A Cytidylate kinase; stru 82.1 0.54 1.8E-05 47.9 2.2 23 140-162 10-32 (233)
397 3lv8_A DTMP kinase, thymidylat 82.1 0.96 3.3E-05 46.2 4.1 33 140-172 28-60 (236)
398 2xb4_A Adenylate kinase; ATP-b 81.9 0.52 1.8E-05 48.1 2.1 21 142-162 3-23 (223)
399 2f1r_A Molybdopterin-guanine d 81.8 0.34 1.2E-05 46.8 0.6 22 141-162 4-25 (171)
400 2ehv_A Hypothetical protein PH 81.7 0.53 1.8E-05 49.0 2.1 22 140-161 31-52 (251)
401 2pcj_A ABC transporter, lipopr 81.6 0.52 1.8E-05 48.0 1.9 21 141-161 32-52 (224)
402 2r8r_A Sensor protein; KDPD, P 81.5 0.63 2.2E-05 46.7 2.4 107 142-258 9-128 (228)
403 3umf_A Adenylate kinase; rossm 81.5 0.51 1.7E-05 47.6 1.8 24 139-162 29-52 (217)
404 1vht_A Dephospho-COA kinase; s 81.4 0.6 2E-05 47.4 2.3 21 141-161 6-26 (218)
405 3tif_A Uncharacterized ABC tra 81.3 0.54 1.8E-05 48.3 1.9 22 140-161 32-53 (235)
406 4tmk_A Protein (thymidylate ki 81.2 1.1 3.9E-05 44.9 4.2 31 141-171 5-35 (213)
407 3hws_A ATP-dependent CLP prote 81.1 1.3 4.4E-05 49.1 5.1 24 139-162 51-74 (363)
408 1ak2_A Adenylate kinase isoenz 81.1 0.57 1.9E-05 48.2 2.1 22 141-162 18-39 (233)
409 2ck3_A ATP synthase subunit al 81.0 1.7 5.7E-05 49.3 5.8 84 143-226 166-271 (510)
410 3lnc_A Guanylate kinase, GMP k 80.9 0.41 1.4E-05 49.2 0.9 22 140-161 28-50 (231)
411 2onk_A Molybdate/tungstate ABC 80.9 0.59 2E-05 48.1 2.0 22 140-161 25-46 (240)
412 3ake_A Cytidylate kinase; CMP 80.7 0.6 2.1E-05 46.9 2.1 22 141-162 4-25 (208)
413 2p5t_B PEZT; postsegregational 80.5 0.39 1.3E-05 50.2 0.5 23 140-162 33-55 (253)
414 2zej_A Dardarin, leucine-rich 80.5 0.66 2.3E-05 45.5 2.2 21 142-162 5-25 (184)
415 1fx0_A ATP synthase alpha chai 80.4 1.2 4E-05 50.5 4.3 81 143-226 167-264 (507)
416 4a74_A DNA repair and recombin 80.4 0.66 2.3E-05 47.5 2.3 21 141-161 27-47 (231)
417 3zvl_A Bifunctional polynucleo 80.4 0.67 2.3E-05 52.4 2.5 23 140-162 259-281 (416)
418 2wji_A Ferrous iron transport 80.3 0.75 2.6E-05 44.2 2.5 21 142-162 6-26 (165)
419 1np6_A Molybdopterin-guanine d 80.3 0.67 2.3E-05 44.9 2.1 23 140-162 7-29 (174)
420 3tlx_A Adenylate kinase 2; str 80.2 0.63 2.2E-05 48.1 2.1 22 141-162 31-52 (243)
421 1oix_A RAS-related protein RAB 80.2 0.67 2.3E-05 45.9 2.2 21 142-162 32-52 (191)
422 2cbz_A Multidrug resistance-as 80.2 0.62 2.1E-05 47.9 1.9 22 141-162 33-54 (237)
423 3d3q_A TRNA delta(2)-isopenten 79.9 0.64 2.2E-05 50.2 1.9 22 141-162 9-30 (340)
424 4g1u_C Hemin import ATP-bindin 79.8 0.64 2.2E-05 48.7 1.9 22 140-161 38-59 (266)
425 1b0u_A Histidine permease; ABC 79.8 0.64 2.2E-05 48.6 1.9 21 141-161 34-54 (262)
426 1ltq_A Polynucleotide kinase; 79.6 0.56 1.9E-05 50.5 1.5 21 141-161 4-24 (301)
427 3b9q_A Chloroplast SRP recepto 79.6 0.64 2.2E-05 49.7 1.9 23 140-162 101-123 (302)
428 3crm_A TRNA delta(2)-isopenten 79.6 0.62 2.1E-05 49.9 1.7 22 141-162 7-28 (323)
429 2olj_A Amino acid ABC transpor 79.5 0.67 2.3E-05 48.4 1.9 22 140-161 51-72 (263)
430 3gfo_A Cobalt import ATP-bindi 79.5 0.71 2.4E-05 48.5 2.1 21 141-161 36-56 (275)
431 1sq5_A Pantothenate kinase; P- 79.4 0.65 2.2E-05 50.0 1.9 22 140-161 81-102 (308)
432 1ji0_A ABC transporter; ATP bi 79.3 0.69 2.3E-05 47.7 1.9 21 141-161 34-54 (240)
433 2pze_A Cystic fibrosis transme 79.3 0.69 2.4E-05 47.3 1.9 22 141-162 36-57 (229)
434 3upu_A ATP-dependent DNA helic 79.2 1.3 4.3E-05 51.0 4.4 37 219-258 130-166 (459)
435 1g6h_A High-affinity branched- 79.1 0.7 2.4E-05 48.2 1.9 21 141-161 35-55 (257)
436 3b85_A Phosphate starvation-in 79.1 0.58 2E-05 46.9 1.3 20 142-161 25-44 (208)
437 2f9l_A RAB11B, member RAS onco 78.9 0.81 2.8E-05 45.6 2.3 21 142-162 8-28 (199)
438 2d2e_A SUFC protein; ABC-ATPas 78.8 0.75 2.6E-05 47.7 2.1 21 141-161 31-51 (250)
439 2ff7_A Alpha-hemolysin translo 78.7 0.73 2.5E-05 47.7 1.9 21 141-161 37-57 (247)
440 1vpl_A ABC transporter, ATP-bi 78.5 0.75 2.6E-05 47.9 1.9 21 141-161 43-63 (256)
441 2dyk_A GTP-binding protein; GT 78.4 0.86 2.9E-05 43.3 2.3 21 142-162 4-24 (161)
442 2zu0_C Probable ATP-dependent 78.4 0.79 2.7E-05 48.1 2.1 22 141-162 48-69 (267)
443 3hjn_A DTMP kinase, thymidylat 78.4 2 6.9E-05 42.5 5.0 28 142-169 3-30 (197)
444 2ghi_A Transport protein; mult 78.4 0.75 2.6E-05 48.0 1.9 21 141-161 48-68 (260)
445 3exa_A TRNA delta(2)-isopenten 78.4 0.69 2.4E-05 49.0 1.6 22 141-162 5-26 (322)
446 2qi9_C Vitamin B12 import ATP- 78.1 0.78 2.7E-05 47.5 1.9 22 141-162 28-49 (249)
447 2ce2_X GTPase HRAS; signaling 78.1 0.87 3E-05 43.4 2.2 21 142-162 6-26 (166)
448 3foz_A TRNA delta(2)-isopenten 78.0 0.77 2.6E-05 48.6 1.8 23 140-162 11-33 (316)
449 2ixe_A Antigen peptide transpo 78.0 0.79 2.7E-05 48.2 1.9 21 141-161 47-67 (271)
450 1mv5_A LMRA, multidrug resista 77.9 0.85 2.9E-05 47.1 2.1 21 141-161 30-50 (243)
451 2wjg_A FEOB, ferrous iron tran 77.9 0.97 3.3E-05 44.4 2.5 22 141-162 9-30 (188)
452 2hf9_A Probable hydrogenase ni 77.8 0.83 2.8E-05 46.6 2.1 22 141-162 40-61 (226)
453 3sop_A Neuronal-specific septi 77.8 0.88 3E-05 47.8 2.2 20 142-161 5-24 (270)
454 1q3t_A Cytidylate kinase; nucl 77.7 0.95 3.2E-05 46.6 2.5 22 140-161 17-38 (236)
455 2v9p_A Replication protein E1; 77.7 0.82 2.8E-05 48.7 2.0 22 140-161 127-148 (305)
456 1svm_A Large T antigen; AAA+ f 77.6 0.93 3.2E-05 50.0 2.5 22 140-161 170-191 (377)
457 3cmu_A Protein RECA, recombina 77.6 3.2 0.00011 55.6 7.7 82 141-228 385-472 (2050)
458 1yrb_A ATP(GTP)binding protein 77.5 0.96 3.3E-05 47.4 2.5 20 142-161 17-36 (262)
459 2yz2_A Putative ABC transporte 77.5 0.83 2.8E-05 47.9 1.9 21 141-161 35-55 (266)
460 1a7j_A Phosphoribulokinase; tr 77.5 0.46 1.6E-05 50.6 -0.0 22 140-161 6-27 (290)
461 3ld9_A DTMP kinase, thymidylat 77.4 1.5 5E-05 44.4 3.6 31 141-171 23-54 (223)
462 1z2a_A RAS-related protein RAB 77.3 0.94 3.2E-05 43.4 2.2 21 142-162 8-28 (168)
463 3con_A GTPase NRAS; structural 77.3 0.93 3.2E-05 44.6 2.2 21 142-162 24-44 (190)
464 2ihy_A ABC transporter, ATP-bi 77.3 0.84 2.9E-05 48.2 1.9 22 141-162 49-70 (279)
465 3a8t_A Adenylate isopentenyltr 77.3 1 3.4E-05 48.5 2.5 22 141-162 42-63 (339)
466 2ga8_A Hypothetical 39.9 kDa p 77.3 0.88 3E-05 49.2 2.1 21 142-162 27-47 (359)
467 2nq2_C Hypothetical ABC transp 77.3 0.84 2.9E-05 47.4 1.9 22 141-162 33-54 (253)
468 1nlf_A Regulatory protein REPA 77.3 0.86 2.9E-05 48.3 2.0 22 140-161 31-52 (279)
469 2nzj_A GTP-binding protein REM 77.2 1.1 3.6E-05 43.4 2.5 21 142-162 7-27 (175)
470 1zu4_A FTSY; GTPase, signal re 77.0 0.84 2.9E-05 49.3 1.9 24 139-162 105-128 (320)
471 3kta_A Chromosome segregation 76.9 1.1 3.6E-05 43.9 2.5 21 141-161 28-48 (182)
472 2gj8_A MNME, tRNA modification 76.9 1.1 3.7E-05 43.4 2.5 21 142-162 7-27 (172)
473 2lkc_A Translation initiation 76.7 1.4 4.8E-05 42.7 3.3 23 140-162 9-31 (178)
474 2og2_A Putative signal recogni 76.6 0.86 3E-05 49.8 1.8 23 140-162 158-180 (359)
475 4eaq_A DTMP kinase, thymidylat 76.6 0.96 3.3E-05 46.2 2.1 24 141-164 28-51 (229)
476 3cmw_A Protein RECA, recombina 76.2 2.7 9.3E-05 55.4 6.5 81 140-226 1432-1518(1706)
477 3q72_A GTP-binding protein RAD 76.1 1.1 3.6E-05 42.9 2.2 21 142-162 5-25 (166)
478 4edh_A DTMP kinase, thymidylat 76.0 1.1 3.8E-05 45.0 2.3 30 141-170 8-37 (213)
479 3cmw_A Protein RECA, recombina 76.0 3 0.0001 55.0 6.8 82 141-228 385-472 (1706)
480 2ged_A SR-beta, signal recogni 75.9 1.1 3.7E-05 44.2 2.3 22 141-162 50-71 (193)
481 2v3c_C SRP54, signal recogniti 75.9 0.91 3.1E-05 51.2 1.8 24 139-162 99-122 (432)
482 2erx_A GTP-binding protein DI- 75.8 1.2 4.2E-05 42.7 2.6 21 142-162 6-26 (172)
483 1u8z_A RAS-related protein RAL 75.8 1.1 3.9E-05 42.7 2.3 22 142-163 7-28 (168)
484 2eyu_A Twitching motility prot 75.8 1.1 3.8E-05 46.7 2.4 110 141-260 27-136 (261)
485 2vp4_A Deoxynucleoside kinase; 75.7 0.83 2.8E-05 46.8 1.3 22 140-161 21-42 (230)
486 2www_A Methylmalonic aciduria 75.7 0.85 2.9E-05 50.1 1.5 21 141-161 76-96 (349)
487 2h92_A Cytidylate kinase; ross 75.6 1.2 4.1E-05 45.1 2.5 22 140-161 4-25 (219)
488 3end_A Light-independent proto 75.6 0.95 3.3E-05 48.8 1.8 38 140-178 42-79 (307)
489 3q85_A GTP-binding protein REM 75.5 1.3 4.3E-05 42.6 2.5 20 142-161 5-24 (169)
490 3sr0_A Adenylate kinase; phosp 75.4 1.2 4E-05 44.6 2.3 20 143-162 4-23 (206)
491 2wsm_A Hydrogenase expression/ 75.4 1.9 6.4E-05 43.7 4.0 22 141-162 32-53 (221)
492 2ocp_A DGK, deoxyguanosine kin 75.4 0.92 3.2E-05 46.8 1.6 22 141-162 4-25 (241)
493 2j9r_A Thymidine kinase; TK1, 75.4 1.2 4.1E-05 44.3 2.3 106 142-258 31-139 (214)
494 1m7b_A RND3/RHOE small GTP-bin 75.3 1.1 3.9E-05 43.7 2.2 21 142-162 10-30 (184)
495 4akg_A Glutathione S-transfera 75.1 8.9 0.00031 53.3 11.3 150 144-310 1272-1452(2695)
496 1ek0_A Protein (GTP-binding pr 75.0 1.2 4.2E-05 42.6 2.3 22 142-163 6-27 (170)
497 1fzq_A ADP-ribosylation factor 75.0 1.2 4E-05 43.5 2.2 21 142-162 19-39 (181)
498 1z0j_A RAB-22, RAS-related pro 75.0 1.2 4.2E-05 42.6 2.3 22 142-163 9-30 (170)
499 1z08_A RAS-related protein RAB 75.0 1.2 4.1E-05 42.8 2.2 21 142-162 9-29 (170)
500 3ihw_A Centg3; RAS, centaurin, 74.9 1.2 4.1E-05 43.7 2.2 21 142-162 23-43 (184)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-44 Score=432.92 Aligned_cols=314 Identities=18% Similarity=0.262 Sum_probs=249.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhc--CccccC-cCceEEEEecC
Q 048135 102 GMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYN--DKEVEG-FNPKAWVCVSE 178 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~--~~~~~~-f~~~~wv~~~~ 178 (1189)
+....++++.+.|.... ....++++|+||||+||||||+++|+ +.+++. |+.++||++++
T Consensus 132 GR~~~~~~l~~~L~~~~-----------------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~ 194 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMC-----------------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG 194 (549)
T ss_dssp CCHHHHHHHHHHHHHHT-----------------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCC
T ss_pred CchHHHHHHHHHHhccc-----------------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECC
Confidence 66777888877774310 01235678999999999999999998 567777 99999999998
Q ss_pred Cc--CHHHHHHHHHHHccCCCC-------CCCChhHHHHHHHHHHccC-ceEEEecCCCCCChhhHHhhccccCCCCCCc
Q 048135 179 DF--DVLKITKAILESVTSSPS-------NLKDLNQVQIQLEKAIAGQ-KFLIVLDNVWSKNYGLWKTLKSPFMAGTPGS 248 (1189)
Q Consensus 179 ~~--~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs 248 (1189)
.+ +...+++.|+.+++.... +..+.++++..+++.|+++ ||||||||||+.+...|... +||
T Consensus 195 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs 266 (549)
T 2a5y_B 195 TAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRL 266 (549)
T ss_dssp CSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTC
T ss_pred CCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCC
Confidence 85 899999999999986522 2234566789999999996 99999999998643234322 799
Q ss_pred EEEEEcCCchhhhccC-CCceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCC
Q 048135 249 KIIVTTRSVDVALTLG-PIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCK 327 (1189)
Q Consensus 249 ~iivTtr~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~ 327 (1189)
+||||||++.++..++ ...+|+|++|+.+|||+||.++||+.. .++.+++++++|+++|+|+||||+++|+.|+.+
T Consensus 267 ~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~ 343 (549)
T 2a5y_B 267 RCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343 (549)
T ss_dssp EEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred EEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 9999999999998876 336799999999999999999998653 246788899999999999999999999999766
Q ss_pred CChhHHHHHHhhhccCcCCCCChHHHHHHhHhcCchhHHHHHh-----------HhccCCCCceechHHHHHHHHHc--C
Q 048135 328 QRDDEWQGILKSRIWDLSEESDILPVLRLSYHHLPSHLKRCFS-----------YSAIFPKGYEFEEMELILLWMAD--G 394 (1189)
Q Consensus 328 ~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~fp~~~~~~~~~li~~wia~--g 394 (1189)
. .+|...+....+... ..++.+++.+||++||+++|.||+ |||+||+++.|+ +..|+|+ |
T Consensus 344 -~-w~~~~~l~~~l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G 416 (549)
T 2a5y_B 344 -T-FEKMAQLNNKLESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPV 416 (549)
T ss_dssp -S-HHHHHHHHHHHHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC
T ss_pred -h-HHHHHHhHHHhhccc-HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccc
Confidence 2 234344444333222 367889999999999999999999 999999999999 8899999 9
Q ss_pred CcccCccchhHHHHHHHHHHHHHhccccccccC-CCCceEeChhHHHHHHHhhcccce
Q 048135 395 LIQQSEDNKQMEDLGHKYFRDLLSRSIFQKSCN-NSSKFLMHDLVNDLAQWVSGETNF 451 (1189)
Q Consensus 395 ~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~-~~~~~~mHdlv~d~~~~i~~~~~~ 451 (1189)
|+........++++++ |+++|+++++++.... ...+|+|||++|++|+.++.++++
T Consensus 417 ~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 417 DICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 9987654566788888 9999999999998643 356799999999999999987654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-43 Score=442.29 Aligned_cols=611 Identities=17% Similarity=0.092 Sum_probs=348.1
Q ss_pred hhhhhcCCCcceEEEeccCCCcccCccccCcccccEEeccccccc-cccc--cccCCCCCcEEeccCccccccCchhh-h
Q 048135 516 LSDLLPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAIS-SLPE--STCSLINLQTLLLRRCFYLMKWPSKV-M 591 (1189)
Q Consensus 516 ~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~-~LP~--~i~~L~~L~~L~L~~~~~l~~lp~~i-~ 591 (1189)
++..+..+++|++++++.+.+..+|+.|+++++|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 344567778888888888877777778888888888888888776 4666 78888888888888875555566555 7
Q ss_pred ccccCCcccccCCcccccCCCC---CCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchH
Q 048135 592 NLINLRHLDITDVHLIKEMPLG---MEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQ 668 (1189)
Q Consensus 592 ~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 668 (1189)
++++|++|++++|......|.. ++++++|++|+...+. +. .. .....+++|+.|+++++.-..
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~------~~--~~~~~l~~L~~L~Ls~n~l~~---- 214 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK--IS------GD--VDVSRCVNLEFLDVSSNNFST---- 214 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE--EE------SC--CBCTTCTTCCEEECCSSCCCS----
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc--cc------cc--CCcccCCcCCEEECcCCcCCC----
Confidence 7888888888887744444444 6677777777543221 00 00 012455666666666443111
Q ss_pred HHhccCCCCCCcceEEEeeeCCC-CCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCcccc
Q 048135 669 SVLGMLKSHTSLKELTIKCYGGT-RFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIY 747 (1189)
Q Consensus 669 ~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~ 747 (1189)
....+..+++|++|+++++... .+|.++. .+++|+.|++++|.....+|.. .+++|+.|+++++.....++..+.
T Consensus 215 -~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~ 290 (768)
T 3rgz_A 215 -GIPFLGDCSALQHLDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLS 290 (768)
T ss_dssp -CCCBCTTCCSCCEEECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSC
T ss_pred -CCcccccCCCCCEEECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHH
Confidence 1122555666666666666654 2344444 3666666776666554455544 566666666666543333333221
Q ss_pred CCCCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC----CCCCccEEEEeccCCc---
Q 048135 748 GDGCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD----HLPSLKKLVISECAQF--- 820 (1189)
Q Consensus 748 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~----~l~~L~~L~l~~c~~~--- 820 (1189)
..+++|+.|++.++........ .+..+++|++|++++| .+.+.+|. .+++|+.|++++|...
T Consensus 291 -----~~~~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 291 -----GACDTLTGLDLSGNHFYGAVPP-----FFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp -----TTCTTCSEEECCSSEEEECCCG-----GGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred -----hhcCcCCEEECcCCcCCCccch-----HHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence 1136666666665432211111 1445666666666666 44434442 3556666666665422
Q ss_pred ccccCCCC-ccceEEEecCCCce-------eecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCC
Q 048135 821 EVSFASLP-VLSDLSIDGCKGLV-------CESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQ 892 (1189)
Q Consensus 821 ~~~~~~l~-~L~~L~l~~~~~~~-------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 892 (1189)
...+..++ +|++|++++|.... ...+++|+.|++++|... +.+|..+..+++|++|++++|.
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT----------GKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE----------EECCGGGGGCTTCCEEECCSSE
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc----------cccCHHHhcCCCCCEEECcCCc
Confidence 11222233 56666666554211 011345555555555321 2344555555666666666554
Q ss_pred Ccccccc-cCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc-CCCCCcceEEeecccCcccccc
Q 048135 893 RLVSFQE-VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG-QLLLPLKKLQIRKCEKLKHLLD 970 (1189)
Q Consensus 893 ~l~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~ 970 (1189)
....+|. ...+++|+.|++++|.....+|..+. .+++|+.|++++|.....+|.. ..+++|+.|++++|.....+|.
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 3323332 33455566666665544444454443 4555666666655443333322 2244555666655543333332
Q ss_pred ccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCC-CC---------
Q 048135 971 DRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLP-NT--------- 1040 (1189)
Q Consensus 971 ~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~-~~--------- 1040 (1189)
. +..+++|+.|++++|...+.+|..+..+++|+.|++++|+....+|...+. ..
T Consensus 509 ~----------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 509 W----------------IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp G----------------GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred H----------------HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 1 233455555555555555555555555566666666555443344432100 00
Q ss_pred cCeEEEeccCC-------------CccccccccCCCccccccc-------------cCCCCCcceeeccCCCcccccccC
Q 048135 1041 LSRISIGKCEN-------------LVALPDRMHNLSSLQELEI-------------CFPTSLTTLTIEDFNLYKPLIEWG 1094 (1189)
Q Consensus 1041 L~~L~l~~c~~-------------l~~lp~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~~~~l~~l~~~~ 1094 (1189)
.+...+.++.. ....+..+..++.+..+++ ..+++|+.|+++++. +....+..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~ 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGYIPKE 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSCCCGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc-ccccCCHH
Confidence 11111111000 0000111111122222111 234677788887654 55444457
Q ss_pred CCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCCCCCC
Q 048135 1095 LHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEVGLPS 1174 (1189)
Q Consensus 1095 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~ 1174 (1189)
++.+++|+.|+|++|...+.+|... ..+++|+.|++++|...+.+| ..+.++++|++|++++|+.-+.+|+.+.+.
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l---~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEV---GDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGG---GGCTTCCEEECCSSCCEECCC-GGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred HhccccCCEEeCcCCccCCCCChHH---hCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 8999999999999988888899876 677999999999997777888 889999999999999998888999877777
Q ss_pred CcceeeecCCCCC
Q 048135 1175 SLLQLYIDGCPLL 1187 (1189)
Q Consensus 1175 sL~~L~i~~c~~L 1187 (1189)
++....+.|||.|
T Consensus 728 ~~~~~~~~gN~~L 740 (768)
T 3rgz_A 728 TFPPAKFLNNPGL 740 (768)
T ss_dssp GSCGGGGCSCTEE
T ss_pred cCCHHHhcCCchh
Confidence 7877888888764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-41 Score=424.66 Aligned_cols=598 Identities=15% Similarity=0.063 Sum_probs=448.4
Q ss_pred ccCCCCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCCCc-ccCc--cccCcccccEEeccccccc-cc
Q 048135 487 IFPEVECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHII-ELPN--SIGRLMHLRYLDMSNTAIS-SL 562 (1189)
Q Consensus 487 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~--~i~~l~~L~~L~L~~~~i~-~L 562 (1189)
.+..+..|+.+....+.. ...+..+..+++|++|+|++|.+. .+|. .++++++|++|+|++|.+. .+
T Consensus 72 ~l~~L~~L~~l~~~~~~~---------~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHI---------NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142 (768)
T ss_dssp HTTTCTTCCEEECTTSCE---------EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCS
T ss_pred hHhccCcccccCCcCCCc---------CCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcC
Confidence 455667777665433211 112346889999999999999987 4677 8999999999999999887 45
Q ss_pred cccc-cCCCCCcEEeccCccccccCchh---hhccccCCcccccCCcccccCCCCCCCCCCCceeCceecccCccccCCC
Q 048135 563 PEST-CSLINLQTLLLRRCFYLMKWPSK---VMNLINLRHLDITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDL 638 (1189)
Q Consensus 563 P~~i-~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~ 638 (1189)
|..+ .++++|++|++++|......|.. +.++++|++|++++|......| ++.+++|++|+...+. +
T Consensus 143 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~--------l 212 (768)
T 3rgz_A 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN--------F 212 (768)
T ss_dssp SCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSC--------C
T ss_pred CHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCc--------C
Confidence 6655 89999999999999554555655 7899999999999998443333 4889999999653321 2
Q ss_pred CcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCC-CCCCCCCCCCCceeEEEecCCCCCC
Q 048135 639 QDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTR-FPSWVGDPSFSNIVMITLESCTNCR 717 (1189)
Q Consensus 639 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~~~~~~ 717 (1189)
...... +..+++|+.|+++++.- .......+..+++|+.|+++++.... +|.+ .+++|++|++++|....
T Consensus 213 ~~~~~~-l~~l~~L~~L~Ls~n~l----~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 213 STGIPF-LGDCSALQHLDISGNKL----SGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CSCCCB-CTTCCSCCEEECCSSCC----CSCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEE
T ss_pred CCCCcc-cccCCCCCEEECcCCcC----CCcccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCC
Confidence 222223 78899999999986532 22344567888999999999988764 4443 48999999999998766
Q ss_pred CCC-CCCc-ccCcceEeeccccCceEeCccccCCCCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCC
Q 048135 718 SLP-SLGL-LCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKC 795 (1189)
Q Consensus 718 ~lp-~l~~-l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 795 (1189)
.+| .+.. +++|+.|+++++.....++..+ ..+++|+.|.+.++......... .+..+++|++|++++|
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~------~~l~~L~~L~L~~n~l~~~ip~~----~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF------GSCSLLESLALSSNNFSGELPMD----TLLKMRGLKVLDLSFN 353 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGG------GGCTTCCEEECCSSEEEEECCHH----HHTTCTTCCEEECCSS
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHH------hcCCCccEEECCCCcccCcCCHH----HHhcCCCCCEEeCcCC
Confidence 777 4555 4999999999876544555443 33899999999886433222211 1456899999999999
Q ss_pred CCccCCCCCCC---C-CccEEEEeccCCccc---ccCC--CCccceEEEecCCCce-----eecccceeEEEEeccchhh
Q 048135 796 PKLSGRLPDHL---P-SLKKLVISECAQFEV---SFAS--LPVLSDLSIDGCKGLV-----CESFQKVEYLKVVRCEELI 861 (1189)
Q Consensus 796 ~~L~~~~p~~l---~-~L~~L~l~~c~~~~~---~~~~--l~~L~~L~l~~~~~~~-----~~~~~~L~~L~l~~~~~l~ 861 (1189)
.+.+.+|..+ + +|+.|++++|..... .+.. +++|++|++++|.... +..+++|+.|++++|.--
T Consensus 354 -~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~- 431 (768)
T 3rgz_A 354 -EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS- 431 (768)
T ss_dssp -EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE-
T ss_pred -ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc-
Confidence 6666788743 4 999999999865432 2222 6789999999986442 456789999999988632
Q ss_pred HhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccc-cCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCC
Q 048135 862 YLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQE-VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCN 940 (1189)
Q Consensus 862 ~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~ 940 (1189)
+.+|..+..+++|+.|++++|.....+|. ...+++|++|++++|.....+|..+. .+++|+.|++++|.
T Consensus 432 ---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 432 ---------GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNR 501 (768)
T ss_dssp ---------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSC
T ss_pred ---------CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCc
Confidence 35778889999999999999987666654 55689999999999876667777665 88999999999988
Q ss_pred Cccccccc-CCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccc
Q 048135 941 SLKFVVKG-QLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLH 1019 (1189)
Q Consensus 941 ~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 1019 (1189)
....+|.. ..+++|+.|++++|.....+|. .+..+++|+.|++++|...+.+|..+.....+.
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~----------------~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPA----------------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCG----------------GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCH----------------HHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 66566654 4477999999999876555553 245689999999999999999998877665555
Q ss_pred eEeeccCCCC----------------------------------------------cccCC-CCCCCCcCeEEEeccCCC
Q 048135 1020 QIYIWDCSSF----------------------------------------------TSFPK-GGLPNTLSRISIGKCENL 1052 (1189)
Q Consensus 1020 ~L~l~~~~~l----------------------------------------------~~~p~-~~~~~~L~~L~l~~c~~l 1052 (1189)
.+.+..+..+ ..+|. ....++|+.|++++|...
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 4433221000 01111 122458999999998777
Q ss_pred ccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceee
Q 048135 1053 VALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLA 1132 (1189)
Q Consensus 1053 ~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~ 1132 (1189)
+.+|..++++++|+.|++ +.|.++...+..+..+++|+.|+|++|...+.+|... ..+++|+.|+
T Consensus 646 g~ip~~l~~l~~L~~L~L------------s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l---~~l~~L~~L~ 710 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNL------------GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM---SALTMLTEID 710 (768)
T ss_dssp SCCCGGGGGCTTCCEEEC------------CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG---GGCCCCSEEE
T ss_pred ccCCHHHhccccCCEEeC------------cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH---hCCCCCCEEE
Confidence 789999999999888888 5666775555679999999999999998888999876 6779999999
Q ss_pred cccCCCCcccCcCCCCCCCccCceeeccCCCCCCC
Q 048135 1133 IAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSF 1167 (1189)
Q Consensus 1133 l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l 1167 (1189)
+++|+..+.+| . .+.+.++....+.+|+.+.-.
T Consensus 711 ls~N~l~g~iP-~-~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 711 LSNNNLSGPIP-E-MGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCSSEEEEECC-S-SSSGGGSCGGGGCSCTEEEST
T ss_pred CcCCcccccCC-C-chhhccCCHHHhcCCchhcCC
Confidence 99998888888 3 355677777888888877543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-35 Score=371.11 Aligned_cols=551 Identities=17% Similarity=0.110 Sum_probs=294.4
Q ss_pred CcceEEEeccCCCcccCc-cccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCch-hhhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIELPN-SIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPS-KVMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 600 (1189)
+++++|++++|.++.+|. .|+++++|++|+|++|.+..+ |..++++++|++|++++| .+..+|. .++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 579999999999888864 588899999999999988877 666888999999999988 6777876 488899999999
Q ss_pred ccCCcccccCC-CCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 601 ITDVHLIKEMP-LGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 601 l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
+++|. +..+| ..++++++|++|+...+. +.......+.++++|+.
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~------------------------- 149 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNG--------LSSTKLGTQVQLENLQE------------------------- 149 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEECCSSC--------CSCCCCCSSSCCTTCCE-------------------------
T ss_pred CCCCc-cCccChhHccccCCCCEEECCCCc--------ccccCchhhcccccCCE-------------------------
Confidence 99887 55555 568888888888542211 11111122334444444
Q ss_pred cceEEEeeeCCCCCCCC-CCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccccCceEeCccccCCCCCCCCCc
Q 048135 680 LKELTIKCYGGTRFPSW-VGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQS 757 (1189)
Q Consensus 680 L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~ 757 (1189)
|+++++....++.. +....+++|+.|++++|......| .++.+++|+.|.+.++.........+... ...++
T Consensus 150 ---L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~---l~~~~ 223 (680)
T 1ziw_A 150 ---LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE---LANTS 223 (680)
T ss_dssp ---EECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH---HTTSC
T ss_pred ---EEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHH---hhhcc
Confidence 44444444333221 111123445555555543322222 24444455555444332110000000000 01234
Q ss_pred cceeeccCcccccccCcCCcccccccC--CcccEEeecCCCCccCCCCC---CCCCccEEEEeccCCccc---ccCCCCc
Q 048135 758 LETLCFRDLQEWELWDPIGKNEYVESF--PLLRELSIVKCPKLSGRLPD---HLPSLKKLVISECAQFEV---SFASLPV 829 (1189)
Q Consensus 758 L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~~~~---~~~~l~~ 829 (1189)
|+.|.+.+........ .. +..+ ++|++|++++| .+.+..|. .+++|+.|++++|..... .+..+++
T Consensus 224 L~~L~L~~n~l~~~~~-~~----~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 224 IRNLSLSNSQLSTTSN-TT----FLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp CCEEECTTSCCCEECT-TT----TGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred ccEEEccCCcccccCh-hH----hhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCC
Confidence 4444444432111000 00 1112 22555555555 33322221 344555555555433221 3444555
Q ss_pred cceEEEecCCCc--------------eeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCC-c
Q 048135 830 LSDLSIDGCKGL--------------VCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQR-L 894 (1189)
Q Consensus 830 L~~L~l~~~~~~--------------~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~-l 894 (1189)
|+.|+++++... .+..+++|+.|+++++.-- +..+..+..+++|++|++++|.. +
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP----------GIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC----------CCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC----------CCChhHhccccCCcEEECCCCchhh
Confidence 555555443211 1223445555555544311 11234466677777777776642 2
Q ss_pred ccccccC----CCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc--CCCCCcceEEeecccCcccc
Q 048135 895 VSFQEVC----FLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLLPLKKLQIRKCEKLKHL 968 (1189)
Q Consensus 895 ~~~~~~~----~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~ 968 (1189)
..++... ..++|+.|++++|. +..++...+..+++|+.|++++|.....++.. ..+++|+.|++++|.. ..+
T Consensus 368 ~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~ 445 (680)
T 1ziw_A 368 RTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQL 445 (680)
T ss_dssp CEECTTTTGGGTTSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-EEC
T ss_pred hhcchhhhcccccCcCceEECCCCC-CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-cee
Confidence 2222211 12467777777753 44444344446677777777776544333322 3355677777777542 221
Q ss_pred ccccCCCCCCccchhhhhccccCCCCCcccccccccc--ccCCCCCCCCCccceEeeccCCCCcccCCCC--CCCCcCeE
Q 048135 969 LDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIR--KSMPESPINLECLHQIYIWDCSSFTSFPKGG--LPNTLSRI 1044 (1189)
Q Consensus 969 ~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~--~~~~L~~L 1044 (1189)
+ .-.+..+++|+.|++++|... +.+|..+..+++|+.|++++| .++.+|... .+++|++|
T Consensus 446 ~---------------~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 446 T---------------RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp C---------------TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred C---------------hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEE
Confidence 1 112334666666766666543 456666777777777777776 355555432 24467777
Q ss_pred EEeccCCCccccc---------cccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccC
Q 048135 1045 SIGKCENLVALPD---------RMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSF 1115 (1189)
Q Consensus 1045 ~l~~c~~l~~lp~---------~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l 1115 (1189)
++++| .+..++. .+.++++|++|++ + .+.++.++...|.++++|+.|++++| .+..+
T Consensus 510 ~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L-----------~-~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l 575 (680)
T 1ziw_A 510 DLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNL-----------E-SNGFDEIPVEVFKDLFELKIIDLGLN-NLNTL 575 (680)
T ss_dssp ECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEEC-----------C-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred eCCCC-CccccchhhccCCcchhhcCCCCCCEEEC-----------C-CCCCCCCCHHHcccccCcceeECCCC-CCCcC
Confidence 77774 3443321 1334444444444 3 34555666656677777777777664 55566
Q ss_pred ccccccCCCCCccceeecccCCCCcccCcCCCC-CCCccCceeeccCCCCCC
Q 048135 1116 PQEELGMMLPTSLTKLAIAKFPELKHLSSKGFR-NLTSLDLLRIRNCPKLTS 1166 (1189)
Q Consensus 1116 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~-~l~~L~~L~l~~c~~l~~ 1166 (1189)
|... +..+++|+.|++++| .++.++...+. .+++|+.|++++||....
T Consensus 576 ~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 576 PASV--FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CTTT--TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CHhH--hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccC
Confidence 6543 345577777777776 55555534444 566777777776654443
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.4e-36 Score=363.11 Aligned_cols=263 Identities=17% Similarity=0.227 Sum_probs=210.5
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccC-cCc-eEEEEecCCcCHHHHHHHHHHHccCCC---C---C-----CCChhH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEG-FNP-KAWVCVSEDFDVLKITKAILESVTSSP---S---N-----LKDLNQ 205 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~---~---~-----~~~~~~ 205 (1189)
.++++|+||||+||||||+++|++.+++. |+. ++|+++++.++...++..+++.+.... . + ..+.++
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~lee 229 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHH
Confidence 35778999999999999999998777777 986 999999999998888888877543210 0 1 113445
Q ss_pred HHHHHHHHH---ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhccCCCceEeCC------CCCh
Q 048135 206 VQIQLEKAI---AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGPIDYYNLE------LLSD 276 (1189)
Q Consensus 206 ~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~------~L~~ 276 (1189)
+...+++.| .+||+||||||||+. +.|+.+. +|||||||||++.++..+.....|+++ +|+.
T Consensus 230 L~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~ 300 (1221)
T 1vt4_I 230 IQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300 (1221)
T ss_dssp HHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCH
Confidence 666777766 679999999999884 6777652 699999999999998655444467777 8999
Q ss_pred hhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCC-ChhHHHHHHhhhccCcCCCCChHHHHH
Q 048135 277 DDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQ-RDDEWQGILKSRIWDLSEESDILPVLR 355 (1189)
Q Consensus 277 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~-~~~~w~~~l~~~~~~~~~~~~i~~~l~ 355 (1189)
+|||+||++. ++.. ..++..+| |+|+||||+++|+.|+.+. ..++|+.. ....+..+|+
T Consensus 301 eEA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---------~~~~I~aaLe 360 (1221)
T 1vt4_I 301 DEVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---------NCDKLTTIIE 360 (1221)
T ss_dssp HHHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---------SCHHHHHHHH
T ss_pred HHHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---------ChhHHHHHHH
Confidence 9999999998 3322 11223333 9999999999999999885 46778753 1356899999
Q ss_pred HhHhcCchhH-HHHHhHhccCCCCceechHHHHHHHHHcCCcccCccchhHHHHHHHHHHHHHhccccccccCCCCceEe
Q 048135 356 LSYHHLPSHL-KRCFSYSAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMEDLGHKYFRDLLSRSIFQKSCNNSSKFLM 434 (1189)
Q Consensus 356 ~sy~~L~~~~-k~~fl~~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~m 434 (1189)
+||+.||+++ |+||+|||+||+++.|+++.++..|+++| ++.+..++++|+++||++.. .....|+|
T Consensus 361 lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~~rYrM 428 (1221)
T 1vt4_I 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKESTISI 428 (1221)
T ss_dssp HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSSSEEBC
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-CCCCEEEe
Confidence 9999999999 99999999999999999999999999887 13478899999999999985 33568999
Q ss_pred ChhHHHHH
Q 048135 435 HDLVNDLA 442 (1189)
Q Consensus 435 Hdlv~d~~ 442 (1189)
||++++++
T Consensus 429 HDLllELr 436 (1221)
T 1vt4_I 429 PSIYLELK 436 (1221)
T ss_dssp CCHHHHHH
T ss_pred hHHHHHHh
Confidence 99999965
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7e-34 Score=350.73 Aligned_cols=510 Identities=15% Similarity=0.099 Sum_probs=278.8
Q ss_pred cceEEEeccCCCccc-CccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCchhhhccccCCccccc
Q 048135 525 KLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDIT 602 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 602 (1189)
.+++|++++|.++.+ |..|+++++|++|+|++|.+..+ |..|+++++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 688899998888887 56788888999999998888876 6778888999999998884444457778888899999888
Q ss_pred CCcccccC-CCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcc
Q 048135 603 DVHLIKEM-PLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLK 681 (1189)
Q Consensus 603 ~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~ 681 (1189)
+|. +..+ |..++++++|++|+..... +.... ...+..+++|+
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L~L~~n~--------l~~~~----------------------------~~~~~~l~~L~ 156 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESLYLGSNH--------ISSIK----------------------------LPKGFPTEKLK 156 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEEECCSSC--------CCCCC----------------------------CCTTCCCTTCC
T ss_pred ccC-cccCCcchhccCCcccEEECCCCc--------ccccC----------------------------cccccCCcccC
Confidence 887 5544 5557777777777432111 00000 01112234455
Q ss_pred eEEEeeeCCCCCC-CCCCCCCCCcee--EEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCccccCCCCCCCCCcc
Q 048135 682 ELTIKCYGGTRFP-SWVGDPSFSNIV--MITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSL 758 (1189)
Q Consensus 682 ~L~l~~~~~~~~p-~~~~~~~~~~L~--~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L 758 (1189)
.|+++++.+..++ ..+. .+++|+ .|++++|......|......+|+.|+++++..+....... ....+
T Consensus 157 ~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-------~~~~l 227 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL-------KNSTI 227 (606)
T ss_dssp EEECCSSCCCEECHHHHH--TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHT-------TTCEE
T ss_pred EEEcccCcccccChhhhh--hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhc-------cccch
Confidence 5555555444332 2222 244444 4555555443333333333455555555543221110000 01112
Q ss_pred ceeeccCcccccccCcCCcccccccC--CcccEEeecCCCCccCCCCCCCCCccEEEEeccCCcccccCCCCccceEEEe
Q 048135 759 ETLCFRDLQEWELWDPIGKNEYVESF--PLLRELSIVKCPKLSGRLPDHLPSLKKLVISECAQFEVSFASLPVLSDLSID 836 (1189)
Q Consensus 759 ~~L~l~~~~~l~~~~~~~~~~~~~~~--~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~ 836 (1189)
+.+.+..+..+......... +..+ .+|++|++++| .+.+..+. .+..+++|++|+++
T Consensus 228 ~~l~~~~~~~~~~~~i~~~~--~~~l~~~~L~~L~l~~n-~l~~~~~~------------------~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 228 QSLWLGTFEDMDDEDISPAV--FEGLCEMSVESINLQKH-YFFNISSN------------------TFHCFSGLQELDLT 286 (606)
T ss_dssp EEEECCCCTTSCCCCCCGGG--GGGGGGSEEEEEECTTC-CCSSCCTT------------------TTTTCTTCSEEECT
T ss_pred hheechhhccccccccChhH--hchhhcCceeEEEeecC-ccCccCHH------------------HhccccCCCEEecc
Confidence 22222222222111111000 1111 15666666666 44322111 23334445555544
Q ss_pred cCCCceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCccccc-ccCCCCCccEEEEecCC
Q 048135 837 GCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQ-EVCFLPILGELEIKNCS 915 (1189)
Q Consensus 837 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~c~ 915 (1189)
+|. +..+|..+..+++|++|++++|......+ ....+++|++|++++|.
T Consensus 287 ~n~------------------------------l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 287 ATH------------------------------LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp TSC------------------------------CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred CCc------------------------------cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 443 13345556666667777776664333222 23446667777777665
Q ss_pred CCCCCccccccCCCccceEEEccCCCcccc--c-ccCCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCC
Q 048135 916 ALKFLPEGMKHNNVCLECLLIEGCNSLKFV--V-KGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGR 992 (1189)
Q Consensus 916 ~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~--~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~ 992 (1189)
....+|...+..+++|++|++++|...... + ....+++|+.|++++|......+ -.+..++
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------~~~~~l~ 400 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT----------------EAFKECP 400 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT----------------TTTTTCT
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH----------------HHhcCCc
Confidence 544566555556667777777665433221 1 11334567777776653222111 1234456
Q ss_pred CCCccccccccccccCCC-CCCCCCccceEeeccCCCCcccCCC--CCCCCcCeEEEeccCCCcc-c--cccccCCCccc
Q 048135 993 SLGENMTWKFEIRKSMPE-SPINLECLHQIYIWDCSSFTSFPKG--GLPNTLSRISIGKCENLVA-L--PDRMHNLSSLQ 1066 (1189)
Q Consensus 993 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~--~~~~~L~~L~l~~c~~l~~-l--p~~~~~l~~L~ 1066 (1189)
+|+.|++++|......|. .+..+++|+.|++++|. +...+.. ..+++|++|++++|..... + +..+..+++|+
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 666677766666555443 36677777777777774 3333222 2345777777777543321 1 13455555555
Q ss_pred cccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCC
Q 048135 1067 ELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKG 1146 (1189)
Q Consensus 1067 ~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 1146 (1189)
+|++ + .+.++.+++..+..+++|++|++++|......|... ..+++| .|++++| .+..+++..
T Consensus 480 ~L~L-----------s-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L-~L~L~~N-~l~~~~~~~ 542 (606)
T 3t6q_A 480 ILVL-----------S-FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL---SHLKGI-YLNLASN-HISIILPSL 542 (606)
T ss_dssp EEEC-----------T-TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG---TTCCSC-EEECCSS-CCCCCCGGG
T ss_pred EEEC-----------C-CCccCccChhhhccccCCCEEECCCCccCcCChhHh---Cccccc-EEECcCC-cccccCHhh
Confidence 5555 3 345555555567777777777777765444444433 556777 7777777 444555455
Q ss_pred CCCCCccCceeeccCCCCC
Q 048135 1147 FRNLTSLDLLRIRNCPKLT 1165 (1189)
Q Consensus 1147 l~~l~~L~~L~l~~c~~l~ 1165 (1189)
+..+++|+.|++++||...
T Consensus 543 ~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 543 LPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp HHHHHTSSEEECTTCCEEC
T ss_pred cccCCCCCEEeCCCCCccc
Confidence 6777777777777766443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.1e-34 Score=350.18 Aligned_cols=271 Identities=16% Similarity=0.065 Sum_probs=150.1
Q ss_pred cCCCCCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcce
Q 048135 877 LHGLTSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKK 956 (1189)
Q Consensus 877 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 956 (1189)
+..+++|+.|++++|. +..++....+++|++|++++|.. +.+|. + .+++|+.|++++|..+..++. ..+++|+.
T Consensus 281 ~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~ 354 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISFKK-VALPSLSY 354 (606)
T ss_dssp CGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEECCC-CCCTTCCE
T ss_pred cccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccchhh-ccCCCCCE
Confidence 5666777777777764 34555555566777777777644 66662 2 667777777777655554422 23456777
Q ss_pred EEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccC--C
Q 048135 957 LQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFP--K 1034 (1189)
Q Consensus 957 L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p--~ 1034 (1189)
|++++|. ++.+.. ....+..+++|+.|++++|. +..+|..+..+++|+.|++++|......| .
T Consensus 355 L~ls~n~-l~~~~~-------------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 355 LDLSRNA-LSFSGC-------------CSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EECCSSC-EEEEEE-------------CCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred EECcCCc-cCCCcc-------------hhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhh
Confidence 7777653 221100 01123456667777776665 33456666677777777777764322222 1
Q ss_pred CCCCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCccc-ccccCCCCCCccceEEEcccCCcc
Q 048135 1035 GGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKP-LIEWGLHKLTALRNLSIGGCLDAV 1113 (1189)
Q Consensus 1035 ~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~-l~~~~l~~l~~L~~L~l~~c~~l~ 1113 (1189)
...+++|++|++++|......|..+.++++|++|++ ++ +.+.. ..+..+..+++|++|++++|....
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-----------~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM-----------AG-NSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC-----------TT-CEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC-----------CC-CcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 223457777777776555555566666666666665 22 23332 333445666666666666653333
Q ss_pred cCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCC--CCCCCcceeeecCCC
Q 048135 1114 SFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEV--GLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1114 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 1185 (1189)
..|... ..+++|+.|++++|......| ..+.++++|++|++++| .++.+|.. ..+++|++|++++||
T Consensus 488 ~~~~~~---~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 488 ISWGVF---DTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ECTTTT---TTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred cChhhh---cccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 333222 445666666666663222223 55666666666666664 35555541 223356666666654
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.5e-33 Score=347.54 Aligned_cols=526 Identities=14% Similarity=0.072 Sum_probs=276.7
Q ss_pred hhhcCCCcceEEEeccCCCccc-CccccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccCc-hhhhccc
Q 048135 518 DLLPKFKKLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKWP-SKVMNLI 594 (1189)
Q Consensus 518 ~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~ 594 (1189)
..|.++++|++|++++|.+..+ |..|+++++|++|+|++|.++.+|. .|+++++|++|++++| .+..+| ..+++++
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCT
T ss_pred HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccC
Confidence 3455566666666666666555 4555666666666666666666654 3666666666666665 344443 3456666
Q ss_pred cCCcccccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhh--cCCCCCccceeeecCCCCcchHHHhc
Q 048135 595 NLRHLDITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAIL--SDKNDLECLVLECRYPFRAYSQSVLG 672 (1189)
Q Consensus 595 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~l~ 672 (1189)
+|++|++++|......|..++++++|++|+.... .+.......+ ..+++|+.|+++++.-.. ....
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~ 189 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN--------KIQALKSEELDIFANSSLKKLELSSNQIKE----FSPG 189 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS--------CCCCBCHHHHGGGTTCEESEEECTTCCCCC----BCTT
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCC--------cccccCHHHhhccccccccEEECCCCcccc----cChh
Confidence 6666666666533333444556666666543211 1111111111 123455555554331100 0011
Q ss_pred cCCC---------------------------CCCcceEEEeeeCCCCC-CCCCCCCCCCceeEEEecCCCCCCCCC-CCC
Q 048135 673 MLKS---------------------------HTSLKELTIKCYGGTRF-PSWVGDPSFSNIVMITLESCTNCRSLP-SLG 723 (1189)
Q Consensus 673 ~l~~---------------------------~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~ 723 (1189)
.+.. .++|+.|+++++..... |.++.....++|+.|++++|......| .++
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence 1122 24555555555544432 333322111335666665554333222 355
Q ss_pred cccCcceEeeccccCceEeCccccCCCCCCCCCccceeeccCcccccccCcCCc----ccccccCCcccEEeecCCCCcc
Q 048135 724 LLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLETLCFRDLQEWELWDPIGK----NEYVESFPLLRELSIVKCPKLS 799 (1189)
Q Consensus 724 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~----~~~~~~~~~L~~L~l~~c~~L~ 799 (1189)
.+++|+.|+++++......+..+ ..+++|+.|.+.+............ ...+..+++|++|++++| .+.
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~ 342 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSL------HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIP 342 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTT------TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBC
T ss_pred CcccccEeeCCCCccCccChhhh------cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccC
Confidence 55556666655543222222111 2244555555443211000000000 000223334444444433 222
Q ss_pred CCCCCCCCCccEEEEeccCCcccccCCCCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhccccc-ccC
Q 048135 800 GRLPDHLPSLKKLVISECAQFEVSFASLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPI-RLH 878 (1189)
Q Consensus 800 ~~~p~~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~-~~~ 878 (1189)
+..| ..+..+++|++|++++|.... ..++. .+.
T Consensus 343 ~~~~------------------~~~~~l~~L~~L~Ls~n~~~~----------------------------~~l~~~~f~ 376 (680)
T 1ziw_A 343 GIKS------------------NMFTGLINLKYLSLSNSFTSL----------------------------RTLTNETFV 376 (680)
T ss_dssp CCCT------------------TTTTTCTTCCEEECTTCBSCC----------------------------CEECTTTTG
T ss_pred CCCh------------------hHhccccCCcEEECCCCchhh----------------------------hhcchhhhc
Confidence 1111 123445555555555543100 00000 000
Q ss_pred --CCCCCcEEEeccCCCcccccc-cCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc--CCCCC
Q 048135 879 --GLTSPKKLCIENCQRLVSFQE-VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLLP 953 (1189)
Q Consensus 879 --~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~ 953 (1189)
..++|+.|++++|......+. ...+++|+.|++++|.....+|...+..+++|++|++++|. +..++.. ..+++
T Consensus 377 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~ 455 (680)
T 1ziw_A 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPS 455 (680)
T ss_dssp GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTT
T ss_pred ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcc
Confidence 124566666666543332222 33456666666666544344554444566666666666654 2222221 23456
Q ss_pred cceEEeecccCc--cccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcc
Q 048135 954 LKKLQIRKCEKL--KHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTS 1031 (1189)
Q Consensus 954 L~~L~l~~c~~l--~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~ 1031 (1189)
|+.|++++|..- ..+|. .+.++++|+.|++++|......+..+..+++|++|++++|. ++.
T Consensus 456 L~~L~l~~n~l~~~~~~p~----------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~ 518 (680)
T 1ziw_A 456 LQRLMLRRVALKNVDSSPS----------------PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LAR 518 (680)
T ss_dssp CCEEECTTSCCBCTTCSSC----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGG
T ss_pred cccchhccccccccccCCc----------------ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccc
Confidence 777777665321 11221 23457788888888877665556678889999999999984 555
Q ss_pred cCC----------CCCCCCcCeEEEeccCCCccccc-cccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCc
Q 048135 1032 FPK----------GGLPNTLSRISIGKCENLVALPD-RMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTA 1100 (1189)
Q Consensus 1032 ~p~----------~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~ 1100 (1189)
++. ....++|++|++++| .++.+|. .+.++++|++|++ +.|.++.+++..+..+++
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~L------------s~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDL------------GLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC------------CSSCCCCCCTTTTTTCTT
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeEC------------CCCCCCcCCHhHhCCCCC
Confidence 432 123468999999994 6777875 4788888888888 667888888888899999
Q ss_pred cceEEEcccCCcccCccccccCC-CCCccceeecccCCCCcccC
Q 048135 1101 LRNLSIGGCLDAVSFPQEELGMM-LPTSLTKLAIAKFPELKHLS 1143 (1189)
Q Consensus 1101 L~~L~l~~c~~l~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~ 1143 (1189)
|+.|++++| .+..++.... . .+++|+.|++++|+.....+
T Consensus 586 L~~L~L~~N-~l~~~~~~~~--~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 586 LKSLNLQKN-LITSVEKKVF--GPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCEEECTTS-CCCBCCHHHH--HHHHTTCSEEECTTCCCCBCCC
T ss_pred CCEEECCCC-cCCccChhHh--cccccccCEEEccCCCcccCCc
Confidence 999999996 6666665431 2 35899999999997766554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-33 Score=346.51 Aligned_cols=511 Identities=15% Similarity=0.092 Sum_probs=252.1
Q ss_pred CcceEEEeccCCCcccC-ccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccC-chhhhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKW-PSKVMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 600 (1189)
++|++|++++|.++.+| ..|.++++|++|++++|.++.+ |..|+++++|++|++++|. +..+ |..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEE
Confidence 45666666666666553 3556666666666666666655 3445666666666666653 3333 55566666666666
Q ss_pred ccCCcccccCC-CCCCCCCCCceeCceecccCccccCCCCc-chhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCC
Q 048135 601 ITDVHLIKEMP-LGMEEWKCLQTLSNFIVSEGLENATDLQD-PTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHT 678 (1189)
Q Consensus 601 l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~ 678 (1189)
+++|. +..+| ..++++++|++|+...+. +.. ..+..+.++++|+.|+++++.-.. .....+..+..++
T Consensus 111 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 111 AVETK-LASLESFPIGQLITLKKLNVAHNF--------IHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENP 180 (606)
T ss_dssp CTTSC-CCCSSSSCCTTCTTCCEEECCSSC--------CCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCT
T ss_pred ccCCc-cccccccccCCCCCCCEEeCCCCc--------ccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccc
Confidence 66665 33333 445666666665432111 111 112334455555555554332100 0000111111111
Q ss_pred C-cceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCC-CCC-CCCcccCcceEeeccccCceEeCccccCCCCCCCC
Q 048135 679 S-LKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCR-SLP-SLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPF 755 (1189)
Q Consensus 679 ~-L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~-~lp-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f 755 (1189)
. +..|+++++....+|..... ..+|+.|++++|.... ..| .++.+++|+.+.+.... +
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-----------------~ 241 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE-----------------F 241 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC-----------------C
T ss_pred cccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhccccccccccccccc-----------------c
Confidence 1 44677777777766655442 3378888888775431 222 35566666666654210 1
Q ss_pred CccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC--CCCCccEEEEeccCCccc-ccCCCCccce
Q 048135 756 QSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD--HLPSLKKLVISECAQFEV-SFASLPVLSD 832 (1189)
Q Consensus 756 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~--~l~~L~~L~l~~c~~~~~-~~~~l~~L~~ 832 (1189)
+....+........ .+ ... -.++.+.+..+..+.+.+|. .+++|+.|++.++..... .++.+++|++
T Consensus 242 ~~~~~l~~~~~~~~-----~~----l~~-l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~ 311 (606)
T 3vq2_A 242 KDERNLEIFEPSIM-----EG----LCD-VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311 (606)
T ss_dssp TTSCCCSCCCGGGG-----TT----GGG-SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSE
T ss_pred ccCCcccccChHHh-----hh----hhh-ccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCE
Confidence 11000000000000 00 111 14556666555455544432 345555665555543211 2333344444
Q ss_pred EEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccccCCCCCccEEEEe
Q 048135 833 LSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQEVCFLPILGELEIK 912 (1189)
Q Consensus 833 L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~ 912 (1189)
|++++|. +..+| .+ .+++|++|++++|..+..+ ....+++|++|+++
T Consensus 312 L~l~~n~------------------------------l~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 312 LSIIRCQ------------------------------LKQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLS 358 (606)
T ss_dssp EEEESCC------------------------------CSSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECC
T ss_pred EEccccc------------------------------Ccccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECc
Confidence 4444443 13344 33 6777777777777555544 34457777777777
Q ss_pred cCCCCCCC---ccccccCCCccceEEEccCCCcccccc-cCCCCCcceEEeecccCccccccccCCCCCCccchhhhhcc
Q 048135 913 NCSALKFL---PEGMKHNNVCLECLLIEGCNSLKFVVK-GQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYV 988 (1189)
Q Consensus 913 ~c~~l~~l---p~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l 988 (1189)
+|. +..+ |..+. .+++|++|++++|. +..++. ...+++|+.|++++|......+. -.+
T Consensus 359 ~n~-l~~~~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~ 420 (606)
T 3vq2_A 359 RNA-LSFSGCCSYSDL-GTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEF---------------SAF 420 (606)
T ss_dssp SSC-EEEEEECCHHHH-CCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTT---------------TTT
T ss_pred CCc-cCCCcchhhhhc-cCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccCh---------------hhh
Confidence 753 3333 33332 56777777777655 333332 13345666776666532221110 123
Q ss_pred ccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcc-cCC-CCCCCCcCeEEEeccCCCccccccccCCCccc
Q 048135 989 SYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTS-FPK-GGLPNTLSRISIGKCENLVALPDRMHNLSSLQ 1066 (1189)
Q Consensus 989 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~-~p~-~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 1066 (1189)
..+++|+.|++++|......|..+..+++|++|++++|..... +|. ...+++|++|++++|......|..+.++++|+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 3455666666666665555566666666666666666532221 222 12334666666666433333344455555555
Q ss_pred cccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCC-CccceeecccCCCCcc
Q 048135 1067 ELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLP-TSLTKLAIAKFPELKH 1141 (1189)
Q Consensus 1067 ~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~-~~L~~L~l~~~~~l~~ 1141 (1189)
+|++ +.+.+..+.+..+..+++|++|++++|. +..+|... ..+ ++|+.|++++|+....
T Consensus 501 ~L~L------------s~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~---~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 501 LLNM------------SHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGIL---QHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp EEEC------------CSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCG---GGSCTTCCEEECCSCCCCCS
T ss_pred EEEC------------CCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhH---hhhcccCcEEEccCCCcccC
Confidence 5555 2334444444455666666666666643 44555542 222 2466666666654433
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-33 Score=375.85 Aligned_cols=305 Identities=20% Similarity=0.299 Sum_probs=237.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccc-cC--cCceEEEE
Q 048135 99 YNVGMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEV-EG--FNPKAWVC 175 (1189)
Q Consensus 99 ~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~-~~--f~~~~wv~ 175 (1189)
..++....++++.+.|... ....++++|+||||+||||||+++|++.+. .. |+.++||+
T Consensus 125 ~~vgR~~~~~~l~~~l~~~------------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~ 186 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL------------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS 186 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT------------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE
T ss_pred eeccHHHHHHHHHHHHhhc------------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE
Confidence 3456677777777776311 122356789999999999999999997533 32 57788999
Q ss_pred ecCCcC--HHHHHHHHHHHccCCCC----CCCChhHHHHHHHHHHccC--ceEEEecCCCCCChhhHHhhccccCCCCCC
Q 048135 176 VSEDFD--VLKITKAILESVTSSPS----NLKDLNQVQIQLEKAIAGQ--KFLIVLDNVWSKNYGLWKTLKSPFMAGTPG 247 (1189)
Q Consensus 176 ~~~~~~--~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~l~~~l~~~~~g 247 (1189)
+++..+ ....+..++..+..... ...+.+++...++..+.++ ||||||||||+. ++|+.+ ++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~ 257 (1249)
T 3sfz_A 187 IGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQ 257 (1249)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSS
T ss_pred ECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCC
Confidence 988543 44556677777765432 2356778888899998877 999999999874 445443 579
Q ss_pred cEEEEEcCCchhhhc-cCCCceEeCCC-CChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhc
Q 048135 248 SKIIVTTRSVDVALT-LGPIDYYNLEL-LSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLC 325 (1189)
Q Consensus 248 s~iivTtr~~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~ 325 (1189)
|+||||||++.++.. ++....++++. |+++||++||...++.. .+.+.+++++|+++|+|+||||+++|++|+
T Consensus 258 ~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~ 332 (1249)
T 3sfz_A 258 CQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLR 332 (1249)
T ss_dssp CEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 999999999999854 45567899996 99999999999988532 233456789999999999999999999998
Q ss_pred CCCChhHHHHHHhhhccCcC----C-----CCChHHHHHHhHhcCchhHHHHHhHhccCCCCceechHHHHHHHHHcCCc
Q 048135 326 CKQRDDEWQGILKSRIWDLS----E-----ESDILPVLRLSYHHLPSHLKRCFSYSAIFPKGYEFEEMELILLWMADGLI 396 (1189)
Q Consensus 326 ~~~~~~~w~~~l~~~~~~~~----~-----~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~i 396 (1189)
.++ ..|+..+........ . ...+..+|.+||+.||+++|.||+|||+||+++.|+++.++..|.++
T Consensus 333 ~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~--- 407 (1249)
T 3sfz_A 333 DFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--- 407 (1249)
T ss_dssp HSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC---
T ss_pred cCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC---
Confidence 875 358777765432211 1 13488999999999999999999999999999999999999999654
Q ss_pred ccCccchhHHHHHHHHHHHHHhccccccccC-CCCceEeChhHHHHHHHhhccc
Q 048135 397 QQSEDNKQMEDLGHKYFRDLLSRSIFQKSCN-NSSKFLMHDLVNDLAQWVSGET 449 (1189)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~-~~~~~~mHdlv~d~~~~i~~~~ 449 (1189)
++.++.++++|++++|++.... ....|+|||++|++++..+.++
T Consensus 408 ---------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ---------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 3567889999999999997643 2346999999999999987765
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-32 Score=334.29 Aligned_cols=524 Identities=14% Similarity=0.081 Sum_probs=339.9
Q ss_pred ceEEEeccCCCcccCccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCchhhhccccCCcccccCC
Q 048135 526 LRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDV 604 (1189)
Q Consensus 526 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 604 (1189)
-+.++.++..++.+|..+.. ++++|+|++|.|+.+ |..|+++++|++|++++|......|..++++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 34788899999999988864 899999999999988 668999999999999999544445788999999999999999
Q ss_pred cccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEE
Q 048135 605 HLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELT 684 (1189)
Q Consensus 605 ~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~ 684 (1189)
......|..++++++|++|+.... ++..+ ....+..+++|++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n----------------------~i~~l--------------~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQT----------------------GISSI--------------DFIPLHNQKTLESLY 135 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTS----------------------CCSCG--------------GGSCCTTCTTCCEEE
T ss_pred cccccChhhhcccccccEeecccc----------------------CcccC--------------CcchhccCCcccEEE
Confidence 844455777888877777743111 00000 012234445555555
Q ss_pred EeeeCCCCC--CCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcc--eEeeccccCceEeCccccCCCCCCCCCccc
Q 048135 685 IKCYGGTRF--PSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLK--ALTIREMTELKIIGSEIYGDGCSKPFQSLE 759 (1189)
Q Consensus 685 l~~~~~~~~--p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~--~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~ 759 (1189)
++++....+ |.+.. +++|+.|++++|......| .++.+++|+ .|+++++.... ++
T Consensus 136 L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~---------------- 195 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFP---TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IE---------------- 195 (606)
T ss_dssp CCSSCCCCCCCCTTCC---CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE-EC----------------
T ss_pred CCCCcccccCcccccC---CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc-cC----------------
Confidence 555554443 22221 4444555554443221111 133333343 33333321111 10
Q ss_pred eeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCCCCCCc--cEEEEeccCCcccccCCCCccceEEEec
Q 048135 760 TLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPDHLPSL--KKLVISECAQFEVSFASLPVLSDLSIDG 837 (1189)
Q Consensus 760 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L--~~L~l~~c~~~~~~~~~l~~L~~L~l~~ 837 (1189)
. . ....+.|++|++.+|..+. ..+..+.++ +.+.+..+.... ...+..
T Consensus 196 -------------~-~-----~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~l~~l~~~~~~~~~----------~~~i~~ 245 (606)
T 3t6q_A 196 -------------P-G-----AFDSAVFQSLNFGGTQNLL-VIFKGLKNSTIQSLWLGTFEDMD----------DEDISP 245 (606)
T ss_dssp -------------T-T-----TTTTCEEEEEECTTCSCHH-HHHHHTTTCEEEEEECCCCTTSC----------CCCCCG
T ss_pred -------------h-h-----HhhhccccccccCCchhHH-HHhhhccccchhheechhhcccc----------ccccCh
Confidence 0 0 1223567777777775332 111122222 222222221111 000000
Q ss_pred CCCceeecc--cceeEEEEeccchhhHhhhhhhhhccc-ccccCCCCCCcEEEeccCCCcccccc-cCCCCCccEEEEec
Q 048135 838 CKGLVCESF--QKVEYLKVVRCEELIYLWQNEIWLEKT-PIRLHGLTSPKKLCIENCQRLVSFQE-VCFLPILGELEIKN 913 (1189)
Q Consensus 838 ~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~ 913 (1189)
..+..+ .+|+.|+++++.- ..+ +..+..+++|++|++++|. ++.+|. ...+++|++|++++
T Consensus 246 ---~~~~~l~~~~L~~L~l~~n~l-----------~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 246 ---AVFEGLCEMSVESINLQKHYF-----------FNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSA 310 (606)
T ss_dssp ---GGGGGGGGSEEEEEECTTCCC-----------SSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTT
T ss_pred ---hHhchhhcCceeEEEeecCcc-----------CccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECcc
Confidence 001111 1566666665531 223 3458889999999999985 556654 56689999999999
Q ss_pred CCCCCCCccccccCCCccceEEEccCCCccccccc--CCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccC
Q 048135 914 CSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYG 991 (1189)
Q Consensus 914 c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~ 991 (1189)
| .+..++...+..+++|++|++++|.....++.. ..+++|+.|++++|... .+. .....+.++
T Consensus 311 n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-------------~~~~~~~~l 375 (606)
T 3t6q_A 311 N-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSD-------------CCNLQLRNL 375 (606)
T ss_dssp C-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEE-------------ESTTTTTTC
T ss_pred C-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-ccc-------------CcchhcccC
Confidence 7 466665555558999999999998766555543 34678999999996532 221 001235678
Q ss_pred CCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCC--CCCCCCcCeEEEeccCCCccccccccCCCcccccc
Q 048135 992 RSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPK--GGLPNTLSRISIGKCENLVALPDRMHNLSSLQELE 1069 (1189)
Q Consensus 992 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~--~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 1069 (1189)
++|+.|++++|......|..+..+++|++|++++|......+. ...+++|++|++++|......|..+..+++|++|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 9999999999988888888999999999999999864333333 23456999999999765555667777888888777
Q ss_pred ccCCCCCcceeeccCCCccc--c-cccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCC
Q 048135 1070 ICFPTSLTTLTIEDFNLYKP--L-IEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKG 1146 (1189)
Q Consensus 1070 l~~~~~L~~L~l~~~~~l~~--l-~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 1146 (1189)
+ +++ .+.. + ....+..+++|++|++++|......|... ..+++|+.|++++|......| ..
T Consensus 456 L-----------~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~-~~ 519 (606)
T 3t6q_A 456 L-----------QGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF---TSLKMMNHVDLSHNRLTSSSI-EA 519 (606)
T ss_dssp C-----------TTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCGGGG-GG
T ss_pred C-----------CCC-CCCccccccchhhccCCCccEEECCCCccCccChhhh---ccccCCCEEECCCCccCcCCh-hH
Confidence 7 433 3332 1 12357889999999999985444445443 678999999999995444444 88
Q ss_pred CCCCCccCceeeccCCCCCCCCC--CCCCCCcceeeecCCC
Q 048135 1147 FRNLTSLDLLRIRNCPKLTSFPE--VGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1147 l~~l~~L~~L~l~~c~~l~~lp~--~~~~~sL~~L~i~~c~ 1185 (1189)
+.++++| .|++++| .+..++. .+.+++|+.|++++||
T Consensus 520 l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 520 LSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp GTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred hCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 9999999 9999997 5556654 2456799999999987
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=3.9e-30 Score=327.42 Aligned_cols=509 Identities=15% Similarity=0.087 Sum_probs=274.0
Q ss_pred CCcceEEEeccCCCccc-CccccCcccccEEecccc-ccccc-cccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 523 FKKLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNT-AISSL-PESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~-~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
.++|++|||++|.++.+ |..|.++++|++|+|++| .+..+ |..|+++++|++|+|++|......|..++++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 35778888888887766 577788888888888877 34466 6667888888888888774333346777888888888
Q ss_pred cccCCcccccCCCC--CCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCC
Q 048135 600 DITDVHLIKEMPLG--MEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSH 677 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~--i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~ 677 (1189)
++++|.....+|.. ++++++|++|+. +.+.-.. ......+..+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~L--------------------------------s~N~l~~---~~~~~~~~~L 147 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDL--------------------------------SKNQIRS---LYLHPSFGKL 147 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEE--------------------------------ESCCCCC---CCCCGGGGTC
T ss_pred eCcCCCCCcccccCccccccCCCCEEEC--------------------------------CCCcccc---cccchhHhhC
Confidence 88877633334443 555555555532 2211000 0011235667
Q ss_pred CCcceEEEeeeCCCCC-CCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccC------cceEeeccccCceEeCccccCC
Q 048135 678 TSLKELTIKCYGGTRF-PSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCS------LKALTIREMTELKIIGSEIYGD 749 (1189)
Q Consensus 678 ~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~------L~~L~L~~~~~l~~~~~~~~~~ 749 (1189)
++|+.|++++|..... |..+.....++|+.|++++|......| .++.+++ |+.|+++++......+..+...
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 7788888877765543 333321001667777777776554444 3444433 7777777653222222211110
Q ss_pred CCCCCCCccceeeccCcccccccCcCC----cccccc--cCCcccEEeecCCCCccCCCCCCCCCccEEEEeccCCcccc
Q 048135 750 GCSKPFQSLETLCFRDLQEWELWDPIG----KNEYVE--SFPLLRELSIVKCPKLSGRLPDHLPSLKKLVISECAQFEVS 823 (1189)
Q Consensus 750 ~~~~~f~~L~~L~l~~~~~l~~~~~~~----~~~~~~--~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c~~~~~~ 823 (1189)
....+++.|.+........+.... ....+. ..++|++|++++| .+.+..| ..
T Consensus 228 ---l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~------------------~~ 285 (844)
T 3j0a_A 228 ---ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNS------------------RV 285 (844)
T ss_dssp ---SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECS------------------CC
T ss_pred ---cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccCh------------------hh
Confidence 012334444443111000000000 000000 0133444444333 2211111 12
Q ss_pred cCCCCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCccccc-ccCC
Q 048135 824 FASLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQ-EVCF 902 (1189)
Q Consensus 824 ~~~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~ 902 (1189)
+..+++|+.|++++|... ...|..+..+++|++|++++|......+ ....
T Consensus 286 ~~~l~~L~~L~L~~n~i~-----------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKIN-----------------------------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp SSSCCCCCEEEEESCCCC-----------------------------EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred hhcCCCCCEEECCCCcCC-----------------------------CCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 334444555555444321 1123345555566666666653322212 1334
Q ss_pred CCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCccch
Q 048135 903 LPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSI 982 (1189)
Q Consensus 903 l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 982 (1189)
+++|+.|++++| .+..++...+..+++|+.|++++|. ++.++. +++|+.|+++++. +..++..
T Consensus 337 l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~---~~~L~~L~l~~N~-l~~l~~~----------- 399 (844)
T 3j0a_A 337 LPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF---IPSIPDIFLSGNK-LVTLPKI----------- 399 (844)
T ss_dssp CTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS---CCSCSEEEEESCC-CCCCCCC-----------
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccC---CCCcchhccCCCC-ccccccc-----------
Confidence 556666666664 4455555444456666666666543 222221 4456666666642 3333211
Q ss_pred hhhhccccCCCCCccccccccccccCCC--CCCCCCccceEeeccCCCCcccCCC---CCCCCcCeEEEeccCCC-----
Q 048135 983 IKYLYVSYGRSLGENMTWKFEIRKSMPE--SPINLECLHQIYIWDCSSFTSFPKG---GLPNTLSRISIGKCENL----- 1052 (1189)
Q Consensus 983 l~~l~l~~~~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~---~~~~~L~~L~l~~c~~l----- 1052 (1189)
..+++.+++++|.... ++. .+.++++|+.|++++|. ++.++.. ..+++|+.|++++|..-
T Consensus 400 --------~~~l~~L~ls~N~l~~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 469 (844)
T 3j0a_A 400 --------NLTANLIHLSENRLEN-LDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469 (844)
T ss_dssp --------CTTCCEEECCSCCCCS-STTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS
T ss_pred --------ccccceeecccCcccc-CchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCcccccccc
Confidence 2234444444443221 111 23467888888888874 4433322 22458888888885432
Q ss_pred ccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceee
Q 048135 1053 VALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLA 1132 (1189)
Q Consensus 1053 ~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~ 1132 (1189)
...|..+.++++|++|++ +.|.++.+++..+..+++|++|+|++| .+..+|... .+++|+.|+
T Consensus 470 ~~~~~~~~~l~~L~~L~L------------s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~----~~~~L~~L~ 532 (844)
T 3j0a_A 470 ELCWDVFEGLSHLQVLYL------------NHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHND----LPANLEILD 532 (844)
T ss_dssp CCCSSCSSCBCCEECCCC------------CHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCC----CCSCCCEEE
T ss_pred ccchhhhcCcccccEEEC------------CCCcccccChhHccchhhhheeECCCC-CCCccChhh----hhccccEEE
Confidence 122344666677777776 455777788778889999999999986 677777654 448899999
Q ss_pred cccCCCCcccCcCCCCCCCccCceeeccCCCCC
Q 048135 1133 IAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLT 1165 (1189)
Q Consensus 1133 l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~ 1165 (1189)
+++| .+..+++.. +++|+.|++++||...
T Consensus 533 Ls~N-~l~~~~~~~---~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 533 ISRN-QLLAPNPDV---FVSLSVLDITHNKFIC 561 (844)
T ss_dssp EEEE-CCCCCCSCC---CSSCCEEEEEEECCCC
T ss_pred CCCC-cCCCCChhH---hCCcCEEEecCCCccc
Confidence 9988 445444233 4578899998876544
No 13
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=314.69 Aligned_cols=279 Identities=20% Similarity=0.307 Sum_probs=212.9
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccc-cC-c-CceEEEEecCCcCHHHHHHHH---HHHccCC----CCCCCChhHHHH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEV-EG-F-NPKAWVCVSEDFDVLKITKAI---LESVTSS----PSNLKDLNQVQI 208 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~-~~-f-~~~~wv~~~~~~~~~~~~~~i---~~~l~~~----~~~~~~~~~~~~ 208 (1189)
.++++|+||||+||||||++++++.++ .. | +.++|++++.. +...+...+ +..++.. .....+.+....
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKD 225 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHH
Confidence 356789999999999999999987654 55 8 58999999865 333344333 3444421 123356677788
Q ss_pred HHHHHHcc--CceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhccCCCceEeC---CCCChhhHHHHH
Q 048135 209 QLEKAIAG--QKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTLGPIDYYNL---ELLSDDDCWSIF 283 (1189)
Q Consensus 209 ~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l---~~L~~~~~~~lf 283 (1189)
.+++.+.+ +++||||||||+. ..++. .++|++||||||++.++..+. ...+++ ++|+.+||++||
T Consensus 226 ~l~~~l~~~~~~~LLVLDdv~~~--~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~ 295 (591)
T 1z6t_A 226 RLRILMLRKHPRSLLILDDVWDS--WVLKA-------FDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEIL 295 (591)
T ss_dssp HHHHHHHHTCTTCEEEEEEECCH--HHHHT-------TCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHH
T ss_pred HHHHHHccCCCCeEEEEeCCCCH--HHHHH-------hcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHH
Confidence 88888876 7899999999874 33332 256899999999999877654 234444 589999999999
Q ss_pred HHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHhhhccCcC---------CCCChHHHH
Q 048135 284 EKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRDDEWQGILKSRIWDLS---------EESDILPVL 354 (1189)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~~~w~~~l~~~~~~~~---------~~~~i~~~l 354 (1189)
...++.. .+...+.+.+|+++|+|+||||+++|+.++.+. ..|...+........ ....+..++
T Consensus 296 ~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 368 (591)
T 1z6t_A 296 SLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAM 368 (591)
T ss_dssp HHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHH
T ss_pred HHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHH
Confidence 9998642 122235688999999999999999999998764 368877765432211 023688999
Q ss_pred HHhHhcCchhHHHHHhHhccCCCCceechHHHHHHHHHcCCcccCccchhHHHHHHHHHHHHHhcccccccc-CCCCceE
Q 048135 355 RLSYHHLPSHLKRCFSYSAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMEDLGHKYFRDLLSRSIFQKSC-NNSSKFL 433 (1189)
Q Consensus 355 ~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~~~~~~~ 433 (1189)
..||+.||++.|.||+++|+||+|+.|+.+.++..|.++ .+.+..++++|+++++++... +....|.
T Consensus 369 ~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~ 436 (591)
T 1z6t_A 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYY 436 (591)
T ss_dssp HHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEE
T ss_pred HHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEE
Confidence 999999999999999999999999999999999999543 134678899999999998653 2345799
Q ss_pred eChhHHHHHHHhhc
Q 048135 434 MHDLVNDLAQWVSG 447 (1189)
Q Consensus 434 mHdlv~d~~~~i~~ 447 (1189)
||++++++++....
T Consensus 437 ~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 437 LHDLQVDFLTEKNC 450 (591)
T ss_dssp CCHHHHHHHHHHTG
T ss_pred EcHHHHHHHHhhhh
Confidence 99999999988743
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.4e-30 Score=312.82 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=114.3
Q ss_pred CcceEEEeccCCCccc-CccccCcccccEEecccccccccc-ccccCCCCCcEEeccCccccccCchh-hhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNTAISSLP-ESTCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 600 (1189)
+.|++|++++|.++.+ |..|+++++|++|++++|.+..+| ..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 5899999999999887 578999999999999999999885 67999999999999998 56666654 89999999999
Q ss_pred ccCCcccc--cCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCC
Q 048135 601 ITDVHLIK--EMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHT 678 (1189)
Q Consensus 601 l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~ 678 (1189)
+++|. +. ..|..++++++|++|+...+. .........+.++++|+.|+++++.- .......+..++
T Consensus 105 Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~ 172 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFPNLTNLQTLRIGNVE-------TFSEIRRIDFAGLTSLNELEIKALSL----RNYQSQSLKSIR 172 (549)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESS-------SCCEECTTTTTTCCEEEEEEEEETTC----CEECTTTTTTCS
T ss_pred CCCCc-ccccchhhhhhccCCccEEECCCCc-------cccccCHhhhhcccccCeeeccCCcc----cccChhhhhccc
Confidence 99997 54 456778888888888653321 01111122344455555555543221 111122334444
Q ss_pred CcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCC
Q 048135 679 SLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCT 714 (1189)
Q Consensus 679 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~ 714 (1189)
+|+.|++.++....+|.++.. .+++|+.|++++|.
T Consensus 173 ~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 173 DIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCB
T ss_pred cCceEecccCcccccchhhHh-hcccccEEEccCCc
Confidence 455555554444444433311 24445555555443
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.5e-29 Score=303.95 Aligned_cols=406 Identities=15% Similarity=0.168 Sum_probs=243.5
Q ss_pred ceEEEeccCCCcccCccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCc-hhhhccccCCcccccC
Q 048135 526 LRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWP-SKVMNLINLRHLDITD 603 (1189)
Q Consensus 526 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 603 (1189)
..+.|.+++.++.+|..+. ++|++|+|++|.++.+ |..++++++|++|++++| .+..+| ..++++++|++|++++
T Consensus 7 ~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCC
Confidence 4456888899999998775 7999999999999988 567999999999999999 455554 6799999999999999
Q ss_pred CcccccCCCC-CCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcce
Q 048135 604 VHLIKEMPLG-MEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKE 682 (1189)
Q Consensus 604 ~~~~~~~p~~-i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~ 682 (1189)
|. +..+|.. ++++++|++|+.... .+..+ .....+..+++|+.
T Consensus 84 n~-l~~~~~~~~~~l~~L~~L~Ls~n----------------------~l~~~-------------~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 84 NH-LSSLSSSWFGPLSSLKYLNLMGN----------------------PYQTL-------------GVTSLFPNLTNLQT 127 (549)
T ss_dssp SC-CCSCCHHHHTTCTTCCEEECTTC----------------------CCSSS-------------CSSCSCTTCTTCCE
T ss_pred Cc-cCccCHHHhccCCCCcEEECCCC----------------------ccccc-------------chhhhhhccCCccE
Confidence 98 5555543 677777766643111 00000 01123444556666
Q ss_pred EEEeeeC-CCCCC-CCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccccCceEeCccccCCCCCCCCCccc
Q 048135 683 LTIKCYG-GTRFP-SWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLE 759 (1189)
Q Consensus 683 L~l~~~~-~~~~p-~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~ 759 (1189)
|+++++. ...+| ..+. .+++|+.|++++|......| .++.+++|+.|+++++.. ..++..+
T Consensus 128 L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~------------- 191 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFA--GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIF------------- 191 (549)
T ss_dssp EEEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHH-------------
T ss_pred EECCCCccccccCHhhhh--cccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhh-------------
Confidence 6666654 33343 2332 35666666666665444344 455566666666654321 0000000
Q ss_pred eeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCC------CCCCCCCccEEEEeccCCccc-------ccCC
Q 048135 760 TLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGR------LPDHLPSLKKLVISECAQFEV-------SFAS 826 (1189)
Q Consensus 760 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~------~p~~l~~L~~L~l~~c~~~~~-------~~~~ 826 (1189)
...+++|++|++++| .+.+. +...+++|+.|++.++..... .+..
T Consensus 192 ---------------------~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 192 ---------------------ADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp ---------------------HHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred ---------------------HhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 223667777777776 44321 112356677777766542211 2234
Q ss_pred CCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccc-----cc-c
Q 048135 827 LPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSF-----QE-V 900 (1189)
Q Consensus 827 l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~-~ 900 (1189)
+++|+.+++++|.......++ ......+..+++|+.|++.++..-... +. .
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~-----------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFN-----------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCC-----------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred hcccccccccccccccccccc-----------------------ccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence 555666666655311100000 001123456778888888776422111 00 1
Q ss_pred CCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccc----cCCCCCcceEEeecccCccccccccCCCC
Q 048135 901 CFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVK----GQLLLPLKKLQIRKCEKLKHLLDDRGHIN 976 (1189)
Q Consensus 901 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 976 (1189)
...++|+.|++++| .++.+|..++..+++|++|++++|.....++. ...+++|+.|++++|. ++.++.
T Consensus 307 ~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------ 378 (549)
T 2z81_A 307 SLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQK------ 378 (549)
T ss_dssp HHSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHH------
T ss_pred hhcccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-cccccc------
Confidence 12568999999986 57788888766788999999998875544321 2345789999998863 333221
Q ss_pred CCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEecc
Q 048135 977 STSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKC 1049 (1189)
Q Consensus 977 ~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c 1049 (1189)
..-.+..+++|+.|++++|.. +.+|..+..+++|++|++++|. ++.+|.. .+++|++|++++|
T Consensus 379 -------~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~-~~~~L~~L~Ls~N 441 (549)
T 2z81_A 379 -------TGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTG-IRVVKTC-IPQTLEVLDVSNN 441 (549)
T ss_dssp -------HHHHGGGCTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSC-CSCCCTT-SCTTCSEEECCSS
T ss_pred -------chhhhhcCCCCCEEECCCCCC-ccCChhhcccccccEEECCCCC-cccccch-hcCCceEEECCCC
Confidence 001244566777777777643 4667767777777777777763 5555432 3346666666664
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=306.72 Aligned_cols=488 Identities=17% Similarity=0.125 Sum_probs=263.8
Q ss_pred cceEEEeccCCCcccC-ccccCcccccEEecccccccccc-ccccCCCCCcEEeccCccccccCc-hhhhccccCCcccc
Q 048135 525 KLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSLP-ESTCSLINLQTLLLRRCFYLMKWP-SKVMNLINLRHLDI 601 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 601 (1189)
++++|++++|.++.++ ..|.++++|++|+|++|.+..+| ..|+++++|++|++++| .+..+| ..++++++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccc
Confidence 5667777777766663 45666777777777777666663 34666777777777766 344443 45666777777777
Q ss_pred cCCcccccCCC-CCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCc
Q 048135 602 TDVHLIKEMPL-GMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSL 680 (1189)
Q Consensus 602 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L 680 (1189)
++|. +..+|. .+++ +++|
T Consensus 108 ~~n~-l~~l~~~~~~~------------------------------------------------------------l~~L 126 (570)
T 2z63_A 108 VETN-LASLENFPIGH------------------------------------------------------------LKTL 126 (570)
T ss_dssp TTSC-CCCSTTCSCTT------------------------------------------------------------CTTC
T ss_pred cccc-cccCCCccccc------------------------------------------------------------cccc
Confidence 6665 444432 2333 3344
Q ss_pred ceEEEeeeCCCC--CCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCc----ceEeeccccCceEeCccccCCCCCC
Q 048135 681 KELTIKCYGGTR--FPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSL----KALTIREMTELKIIGSEIYGDGCSK 753 (1189)
Q Consensus 681 ~~L~l~~~~~~~--~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L----~~L~L~~~~~l~~~~~~~~~~~~~~ 753 (1189)
++|+++++.... +|..+. .+++|+.|++++|......+ .++.+++| ..|+++++. +..++...
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~------- 196 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA------- 196 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGG--GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTT-------
T ss_pred cEEecCCCccceecChhhhc--ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCHHH-------
Confidence 444444454443 465554 47788888888775433322 35556666 667776643 22222211
Q ss_pred CCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCC---CCCCCccEEEEeccCCcccccCCCCcc
Q 048135 754 PFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLP---DHLPSLKKLVISECAQFEVSFASLPVL 830 (1189)
Q Consensus 754 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p---~~l~~L~~L~l~~c~~~~~~~~~l~~L 830 (1189)
| . ..+|++|++.++..-...+| ..+++++.+.+.... +....++
T Consensus 197 -~--------------------------~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~-----~~~~~~l 243 (570)
T 2z63_A 197 -F--------------------------K-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE-----FRNEGNL 243 (570)
T ss_dssp -T--------------------------T-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE-----CCCCSSC
T ss_pred -h--------------------------c-cCcceeEecccccccccchhhhhcCccccceeeecccc-----ccCchhh
Confidence 0 0 11344444443311000001 012222222221100 0000000
Q ss_pred ceEEEecCCCceeeccc--ceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccc-cCCCCCcc
Q 048135 831 SDLSIDGCKGLVCESFQ--KVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQE-VCFLPILG 907 (1189)
Q Consensus 831 ~~L~l~~~~~~~~~~~~--~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~ 907 (1189)
+.+ +...+..++ .++.+.+.+++.+. +..|..+..+++|++|++++|. +..+|. ...+ +|+
T Consensus 244 ~~~-----~~~~~~~l~~l~l~~l~l~~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~ 307 (570)
T 2z63_A 244 EKF-----DKSALEGLCNLTIEEFRLAYLDYYL---------DDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQ 307 (570)
T ss_dssp EEC-----CTTTTGGGGGSEEEEEEEEETTEEE---------SCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCS
T ss_pred hhc-----chhhhccccccchhhhhhhcchhhh---------hhchhhhcCcCcccEEEecCcc-chhhhhhhccC-Ccc
Confidence 000 000000011 23334444432221 2345556666777777777763 334443 2334 777
Q ss_pred EEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCccchhhhhc
Q 048135 908 ELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLY 987 (1189)
Q Consensus 908 ~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~ 987 (1189)
+|++++| .+..+|.. .+++|+.|++++|.....++. ..+++|+.|++++|.. .... .....
T Consensus 308 ~L~l~~n-~~~~l~~~---~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l-~~~~-------------~~~~~ 368 (570)
T 2z63_A 308 HLELVNC-KFGQFPTL---KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGL-SFKG-------------CCSQS 368 (570)
T ss_dssp EEEEESC-BCSSCCBC---BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCC-BEEE-------------EEEHH
T ss_pred EEeeccC-cccccCcc---cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCcc-Cccc-------------ccccc
Confidence 7777776 34466652 456777777777654444433 3455777777777532 2110 00112
Q ss_pred cccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCC--CCCCCCcCeEEEeccCCCccccccccCCCcc
Q 048135 988 VSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPK--GGLPNTLSRISIGKCENLVALPDRMHNLSSL 1065 (1189)
Q Consensus 988 l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~--~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L 1065 (1189)
+.++++|+.|++++|..... |..+..+++|++|++++|......|. ...+++|++|++++|......|..+.++++|
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred ccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 34567777777777665443 33367778888888887743222221 2334578888888876555566666666666
Q ss_pred ccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcC
Q 048135 1066 QELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSK 1145 (1189)
Q Consensus 1066 ~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 1145 (1189)
++|++ ++|.......+..+..+++|++|++++|......|... ..+++|+.|++++| .+..+|..
T Consensus 448 ~~L~l-----------~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~ 512 (570)
T 2z63_A 448 EVLKM-----------AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLNMASN-QLKSVPDG 512 (570)
T ss_dssp CEEEC-----------TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSS-CCSCCCTT
T ss_pred cEEEC-----------cCCcCccccchhhhhcccCCCEEECCCCccccCChhhh---hcccCCCEEeCCCC-cCCCCCHH
Confidence 66666 33332212233467788888888888875444335433 56788888888887 56666646
Q ss_pred CCCCCCccCceeeccCCCCCCCC
Q 048135 1146 GFRNLTSLDLLRIRNCPKLTSFP 1168 (1189)
Q Consensus 1146 ~l~~l~~L~~L~l~~c~~l~~lp 1168 (1189)
.+.++++|+.|++++|+.-...|
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhhcccCCcEEEecCCcccCCCc
Confidence 67888888888888876655554
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=307.79 Aligned_cols=490 Identities=17% Similarity=0.141 Sum_probs=279.7
Q ss_pred CCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCC-Cccc-CccccCcccccEEeccccccccc-ccccc
Q 048135 491 VECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYH-IIEL-PNSIGRLMHLRYLDMSNTAISSL-PESTC 567 (1189)
Q Consensus 491 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~L-P~~i~ 567 (1189)
.+.++.|....+.. ....+..|..+++|++|+|++|. +..+ |..|+++++|++|+|++|.+..+ |..|+
T Consensus 23 p~~l~~LdLs~N~i--------~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 23 LNTTERLLLSFNYI--------RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CTTCCEEEEESCCC--------CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCcCEEECCCCcC--------CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 46778876655432 12345568899999999999995 5566 78899999999999999999987 88899
Q ss_pred CCCCCcEEeccCccccccCchh--hhccccCCcccccCCcccccC-C-CCCCCCCCCceeCceecccCccccCCCCcchh
Q 048135 568 SLINLQTLLLRRCFYLMKWPSK--VMNLINLRHLDITDVHLIKEM-P-LGMEEWKCLQTLSNFIVSEGLENATDLQDPTK 643 (1189)
Q Consensus 568 ~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~-p-~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~ 643 (1189)
++++|++|+|++|.....+|.. +++|++|++|++++|. +..+ | ..++++++|++|+..... +.....
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~--------i~~~~~ 165 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ--------IFLVCE 165 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC--------CCCCCS
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc--------CCeeCH
Confidence 9999999999999544446665 8999999999999998 4444 2 468899999988653221 111111
Q ss_pred hhhcCC--CCCccceeeecCCCCcchHHHhccCCCCC------CcceEEEeeeCCC-CCCCCCCC-CCCCceeEEEecCC
Q 048135 644 AILSDK--NDLECLVLECRYPFRAYSQSVLGMLKSHT------SLKELTIKCYGGT-RFPSWVGD-PSFSNIVMITLESC 713 (1189)
Q Consensus 644 ~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~l~~~~------~L~~L~l~~~~~~-~~p~~~~~-~~~~~L~~L~l~~~ 713 (1189)
..+..+ ++|+.|+++.+.-... ....+..+. +|+.|+++++... ..|.++.. ....++..+.+..+
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred HHcccccCCccceEECCCCccccc----cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 222222 5666666654321110 001111111 2555555544322 12222211 01123444444321
Q ss_pred CCCCC-----CC-----CCCcccCcceEeeccccCceEeCccccCCCCCCCCCccceeeccCcccccccCcCCccccccc
Q 048135 714 TNCRS-----LP-----SLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLETLCFRDLQEWELWDPIGKNEYVES 783 (1189)
Q Consensus 714 ~~~~~-----lp-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 783 (1189)
..... +. .+..+ ..++|+.|++.+........ ..+..
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l----------------------------~~~~L~~L~Ls~n~l~~~~~-----~~~~~ 288 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGL----------------------------ARSSVRHLDLSHGFVFSLNS-----RVFET 288 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTT----------------------------TTSCCCEEECTTCCCCEECS-----CCSSS
T ss_pred cccccccccccCCCChhhhhcc----------------------------ccCCccEEECCCCcccccCh-----hhhhc
Confidence 10000 00 11111 12344444444332111100 00334
Q ss_pred CCcccEEeecCCCCccCCCCC---CCCCccEEEEeccCCcc---cccCCCCccceEEEecCCCce-----eecccceeEE
Q 048135 784 FPLLRELSIVKCPKLSGRLPD---HLPSLKKLVISECAQFE---VSFASLPVLSDLSIDGCKGLV-----CESFQKVEYL 852 (1189)
Q Consensus 784 ~~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~L~~L 852 (1189)
+++|+.|++++| .+.+..|. .+++|+.|++++|.... ..+..+++|+.|++++|.... +..+++|+.|
T Consensus 289 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 289 LKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp CCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred CCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence 455555555554 33322221 34455555555553221 134455555555555553221 2334566666
Q ss_pred EEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccc-cccCCCcc
Q 048135 853 KVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEG-MKHNNVCL 931 (1189)
Q Consensus 853 ~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~~L 931 (1189)
+++++.- . .+..+++|+.|++++|. +..+|. ...+++.|++++| .++.++.. ....+++|
T Consensus 368 ~Ls~N~l-----------~----~i~~~~~L~~L~l~~N~-l~~l~~--~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 368 DLRDNAL-----------T----TIHFIPSIPDIFLSGNK-LVTLPK--INLTANLIHLSEN-RLENLDILYFLLRVPHL 428 (844)
T ss_dssp EEETCCS-----------C----CCSSCCSCSEEEEESCC-CCCCCC--CCTTCCEEECCSC-CCCSSTTHHHHTTCTTC
T ss_pred ECCCCCC-----------C----cccCCCCcchhccCCCC-cccccc--cccccceeecccC-ccccCchhhhhhcCCcc
Confidence 6655531 1 12236677777777764 334443 2456777777775 45554322 22256778
Q ss_pred ceEEEccCCCccccccc---CCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccC
Q 048135 932 ECLLIEGCNSLKFVVKG---QLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSM 1008 (1189)
Q Consensus 932 ~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~l 1008 (1189)
+.|++++|.. ...+.. ..+++|+.|+++++. ++..+... ...-.+.++++|+.|++++|......
T Consensus 429 ~~L~Ls~N~l-~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 429 QILILNQNRF-SSCSGDQTPSENPSLEQLFLGENM-LQLAWETE----------LCWDVFEGLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp CEEEEESCCC-CCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSC----------CCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred ceeeCCCCcc-cccccccccccCCccccccCCCCc-cccccccc----------cchhhhcCcccccEEECCCCcccccC
Confidence 8888877653 222211 225678888888853 32221100 11113456788889999998777766
Q ss_pred CCCCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCccccccc
Q 048135 1009 PESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEI 1070 (1189)
Q Consensus 1009 p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 1070 (1189)
|..+..+++|+.|++++| .++.+|...++++|+.|++++|.-.+..|.. +.+|+.|++
T Consensus 497 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l 554 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDV---FVSLSVLDI 554 (844)
T ss_dssp TTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCC---CSSCCEEEE
T ss_pred hhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhH---hCCcCEEEe
Confidence 777889999999999998 6788888777789999999996544444433 345666666
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2e-28 Score=300.06 Aligned_cols=484 Identities=17% Similarity=0.117 Sum_probs=295.6
Q ss_pred CcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCCCcccC-ccccCcccccEEecccccccccc-ccccCC
Q 048135 492 ECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSLP-ESTCSL 569 (1189)
Q Consensus 492 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~LP-~~i~~L 569 (1189)
..++.|....+.. ....+..|..+++|++|++++|.++.++ ..|+++++|++|+|++|.++.+| ..|+++
T Consensus 28 ~~l~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSCCEEECCSCCC--------CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccEEEccCCcc--------CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 4577776654432 1233456889999999999999999885 67999999999999999999886 679999
Q ss_pred CCCcEEeccCccccccCch-hhhccccCCcccccCCcccc--cCCCCCCCCCCCceeCceecccCccccCCCCcchhhhh
Q 048135 570 INLQTLLLRRCFYLMKWPS-KVMNLINLRHLDITDVHLIK--EMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAIL 646 (1189)
Q Consensus 570 ~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l 646 (1189)
++|++|++++| .+..+|. .++++++|++|++++|. +. .+|..++++++|++|+
T Consensus 100 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~---------------------- 155 (570)
T 2z63_A 100 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLD---------------------- 155 (570)
T ss_dssp TTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEE----------------------
T ss_pred ccccccccccc-ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEe----------------------
Confidence 99999999998 6777775 68999999999999997 44 3576666666666553
Q ss_pred cCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCC-CCCCCCCCCce----eEEEecCCCCCCCCCC
Q 048135 647 SDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFP-SWVGDPSFSNI----VMITLESCTNCRSLPS 721 (1189)
Q Consensus 647 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~~~~L----~~L~l~~~~~~~~lp~ 721 (1189)
++++....++ ..+. .+++| ..+++++|......|.
T Consensus 156 --------------------------------------l~~n~l~~~~~~~~~--~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 156 --------------------------------------LSSNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp --------------------------------------CTTSCCCEECGGGGH--HHHTCTTCCCEEECTTCCCCEECTT
T ss_pred --------------------------------------CcCCccceecHHHcc--chhccchhhhhcccCCCCceecCHH
Confidence 2223222222 2222 24556 7899999875544443
Q ss_pred CCcccCcceEeeccccCc-eEeCccccCCCCCCCCCccceeeccC--cc---cccccCcCCcccccccCC--cccEEeec
Q 048135 722 LGLLCSLKALTIREMTEL-KIIGSEIYGDGCSKPFQSLETLCFRD--LQ---EWELWDPIGKNEYVESFP--LLRELSIV 793 (1189)
Q Consensus 722 l~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~f~~L~~L~l~~--~~---~l~~~~~~~~~~~~~~~~--~L~~L~l~ 793 (1189)
.....+|+.|+++++..- ..++..+ ..++.++.+.+.. .. .+....... ...++ .++.+.+.
T Consensus 196 ~~~~~~L~~L~l~~n~~~~~~~~~~~------~~l~~l~~~~l~~~~~~~~~~l~~~~~~~----~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 196 AFKEIRLHKLTLRNNFDSLNVMKTCI------QGLAGLEVHRLVLGEFRNEGNLEKFDKSA----LEGLCNLTIEEFRLA 265 (570)
T ss_dssp TTTTCEEEEEEEESCCSCTTHHHHHH------HTTTTCEEEEEEEEECCCCSSCEECCTTT----TGGGGGSEEEEEEEE
T ss_pred HhccCcceeEecccccccccchhhhh------cCccccceeeeccccccCchhhhhcchhh----hccccccchhhhhhh
Confidence 333347999999875211 0000000 1133333322210 00 000000000 00011 12333333
Q ss_pred CCCCccCCCCCCCCCccEEEEeccCCcccccCCCCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhccc
Q 048135 794 KCPKLSGRLPDHLPSLKKLVISECAQFEVSFASLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKT 873 (1189)
Q Consensus 794 ~c~~L~~~~p~~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~ 873 (1189)
+++.+.+..|. .+..+++|++|++++|. +..+
T Consensus 266 ~~~~~~~~~~~------------------~~~~l~~L~~L~l~~~~------------------------------l~~l 297 (570)
T 2z63_A 266 YLDYYLDDIID------------------LFNCLTNVSSFSLVSVT------------------------------IERV 297 (570)
T ss_dssp ETTEEESCSTT------------------TTGGGTTCSEEEEESCE------------------------------ECSC
T ss_pred cchhhhhhchh------------------hhcCcCcccEEEecCcc------------------------------chhh
Confidence 33222222221 22233344444444332 1334
Q ss_pred ccccCCCCCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccc--c-ccCC
Q 048135 874 PIRLHGLTSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFV--V-KGQL 950 (1189)
Q Consensus 874 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~--~-~~~~ 950 (1189)
|..+..+ +|++|++++|.. ..+|. ..+++|+.|++++|......+. ..+++|++|++++|..-... + ....
T Consensus 298 ~~~~~~~-~L~~L~l~~n~~-~~l~~-~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 371 (570)
T 2z63_A 298 KDFSYNF-GWQHLELVNCKF-GQFPT-LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFG 371 (570)
T ss_dssp CBCCSCC-CCSEEEEESCBC-SSCCB-CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHT
T ss_pred hhhhccC-CccEEeeccCcc-cccCc-ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccc
Confidence 5555555 777777777643 34443 3566777777777654443333 35677777777765432211 1 1123
Q ss_pred CCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCC-CCCCCCCccceEeeccCCCC
Q 048135 951 LLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMP-ESPINLECLHQIYIWDCSSF 1029 (1189)
Q Consensus 951 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l 1029 (1189)
+++|+.|++++|. +..++. .+.++++|+.|++++|......| ..+..+++|++|++++|...
T Consensus 372 ~~~L~~L~l~~n~-l~~~~~----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 372 TTSLKYLDLSFNG-VITMSS----------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp CSCCCEEECCSCS-EEEEEE----------------EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred cCccCEEECCCCc-cccccc----------------cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 5577777777754 222221 14557788888888877666555 46778889999999888543
Q ss_pred cccCC-CCCCCCcCeEEEeccCCC-ccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEc
Q 048135 1030 TSFPK-GGLPNTLSRISIGKCENL-VALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIG 1107 (1189)
Q Consensus 1030 ~~~p~-~~~~~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~ 1107 (1189)
...|. ...+++|++|++++|... ..+|..+..+++|++|++ +.+.++.+.+..+..+++|++|+++
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l------------~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL------------SQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC------------TTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEEC------------CCCccccCChhhhhcccCCCEEeCC
Confidence 33332 233568999999987544 357777777887777777 4455666666678889999999999
Q ss_pred ccCCcccCccccccCCCCCccceeecccCCCCcccC
Q 048135 1108 GCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLS 1143 (1189)
Q Consensus 1108 ~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 1143 (1189)
+| .+..++... +..+++|+.|++++|+....+|
T Consensus 503 ~n-~l~~~~~~~--~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 503 SN-QLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp SS-CCSCCCTTT--TTTCTTCCEEECCSSCBCCCTT
T ss_pred CC-cCCCCCHHH--hhcccCCcEEEecCCcccCCCc
Confidence 87 455555432 3567899999999987665555
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3e-28 Score=302.61 Aligned_cols=270 Identities=14% Similarity=0.085 Sum_probs=149.6
Q ss_pred cCCCCCCcceEEEeeeCCCCCCC--CCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCccccCCC
Q 048135 673 MLKSHTSLKELTIKCYGGTRFPS--WVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIYGDG 750 (1189)
Q Consensus 673 ~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 750 (1189)
.+..+++|+.|++++|.+..+|. ++. .+++|+.|++++|... .+|.++.+++|+.|+++++... .++..
T Consensus 543 ~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~----- 613 (876)
T 4ecn_A 543 DEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPED----- 613 (876)
T ss_dssp CTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTT-----
T ss_pred cccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHH-----
Confidence 34456688888888888888887 665 4788899999888755 7788888888888888876422 33322
Q ss_pred CCCCCCccceeeccCcccccccCcCCcccccccCCc-ccEEeecCCCCccCCCCCCC-----CCccEEEEeccCCccc--
Q 048135 751 CSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPL-LRELSIVKCPKLSGRLPDHL-----PSLKKLVISECAQFEV-- 822 (1189)
Q Consensus 751 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~c~~L~~~~p~~l-----~~L~~L~l~~c~~~~~-- 822 (1189)
...+++ |++|++++| .+. .+|..+ ++|+.|++++|.....
T Consensus 614 ------------------------------l~~l~~~L~~L~Ls~N-~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 614 ------------------------------FCAFTDQVEGLGFSHN-KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp ------------------------------SCEECTTCCEEECCSS-CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred ------------------------------HhhccccCCEEECcCC-CCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 222334 445555444 233 333221 1133333333321110
Q ss_pred ----ccC--CCCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhccccccc-CCCCCCcEEEeccCCCcc
Q 048135 823 ----SFA--SLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRL-HGLTSPKKLCIENCQRLV 895 (1189)
Q Consensus 823 ----~~~--~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~l~ 895 (1189)
.+. .+++|+.|++++|. +..+|..+ ..+++|+.|++++|. +.
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~------------------------------L~~lp~~~~~~l~~L~~L~Ls~N~-L~ 710 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNE------------------------------IQKFPTELFATGSPISTIILSNNL-MT 710 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSC------------------------------CCSCCHHHHHTTCCCSEEECCSCC-CS
T ss_pred cchhhhccccCCCcCEEEccCCc------------------------------CCccCHHHHccCCCCCEEECCCCc-CC
Confidence 000 11234444443332 12223222 245566666666653 33
Q ss_pred cccccC-C--------CCCccEEEEecCCCCCCCccccc-cCCCccceEEEccCCCccccccc-CCCCCcceEEeecccC
Q 048135 896 SFQEVC-F--------LPILGELEIKNCSALKFLPEGMK-HNNVCLECLLIEGCNSLKFVVKG-QLLLPLKKLQIRKCEK 964 (1189)
Q Consensus 896 ~~~~~~-~--------l~~L~~L~l~~c~~l~~lp~~~~-~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~ 964 (1189)
.+|... . +++|+.|++++| .+..+|..+. ..+++|+.|++++|.. ..+|.. ..+++|+.|++++|+
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~- 787 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQR- 787 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCB-
T ss_pred ccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCC-
Confidence 443311 1 125666666654 3445555443 3455555555555432 223221 223344444444432
Q ss_pred ccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCCCcCeE
Q 048135 965 LKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRI 1044 (1189)
Q Consensus 965 l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L 1044 (1189)
++++|...+.+|..+..+++|+.|+|++|. ++.+|.. +.++|+.|
T Consensus 788 ---------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~L 832 (876)
T 4ecn_A 788 ---------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYIL 832 (876)
T ss_dssp ---------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEE
T ss_pred ---------------------------------CcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEE
Confidence 113355567788889999999999999985 5888876 44699999
Q ss_pred EEeccCCC
Q 048135 1045 SIGKCENL 1052 (1189)
Q Consensus 1045 ~l~~c~~l 1052 (1189)
++++|+..
T Consensus 833 dLs~N~l~ 840 (876)
T 4ecn_A 833 DIADNPNI 840 (876)
T ss_dssp ECCSCTTC
T ss_pred ECCCCCCC
Confidence 99997643
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.4e-28 Score=297.65 Aligned_cols=364 Identities=13% Similarity=0.120 Sum_probs=200.8
Q ss_pred ccccccccccCCCCCcEEeccCcccccc------------------Cchhhh--ccccCCcccccCCcccccCCCCCCCC
Q 048135 558 AISSLPESTCSLINLQTLLLRRCFYLMK------------------WPSKVM--NLINLRHLDITDVHLIKEMPLGMEEW 617 (1189)
Q Consensus 558 ~i~~LP~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~L 617 (1189)
.++.+|+.++++++|++|+|++|. +.. +|..++ ++++|++|++++|.....+|..++++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 444566667777777777777663 444 666666 67777777777666556666666666
Q ss_pred CCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchH-HHhccC------CCCCCcceEEEeeeCC
Q 048135 618 KCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQ-SVLGML------KSHTSLKELTIKCYGG 690 (1189)
Q Consensus 618 ~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~l------~~~~~L~~L~l~~~~~ 690 (1189)
++|++|+ ++++.. ... ..+..+ ..+++|+.|+++++..
T Consensus 273 ~~L~~L~--------------------------------Ls~n~~---l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 273 PEMQLIN--------------------------------VACNRG---ISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp SSCCEEE--------------------------------CTTCTT---SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CCCCEEE--------------------------------CcCCCC---CccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 6666663 322110 011 112222 3347888888888888
Q ss_pred CCCCC--CCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCccccCCCCCCCCCc-cceeeccCcc
Q 048135 691 TRFPS--WVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQS-LETLCFRDLQ 767 (1189)
Q Consensus 691 ~~~p~--~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~-L~~L~l~~~~ 767 (1189)
..+|. +++ .+++|+.|++++|.....+|.++.+++|+.|+++++. +..++..+ ..+++ |+.|.+.+..
T Consensus 318 ~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l------~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 318 KTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANF------CGFTEQVENLSFAHNK 388 (636)
T ss_dssp SSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTS------EEECTTCCEEECCSSC
T ss_pred CccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhh------hhhcccCcEEEccCCc
Confidence 88888 676 4888999999988766577888888899999998763 33444322 11444 5555554432
Q ss_pred cccccCcCCcccccccCCcccEEeecCCCCccCCCCCCCCCccEEEEeccCCcccccCCCCccceEEEecCCCceeeccc
Q 048135 768 EWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPDHLPSLKKLVISECAQFEVSFASLPVLSDLSIDGCKGLVCESFQ 847 (1189)
Q Consensus 768 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 847 (1189)
-- ..+..-. ...+++|++|++++| .+.+..|..++... ...-.+++|++|++++|..
T Consensus 389 l~-~lp~~~~---~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~-----------~~~~~~~~L~~L~Ls~N~l------- 445 (636)
T 4eco_A 389 LK-YIPNIFD---AKSVSVMSAIDFSYN-EIGSVDGKNFDPLD-----------PTPFKGINVSSINLSNNQI------- 445 (636)
T ss_dssp CS-SCCSCCC---TTCSSCEEEEECCSS-CTTTTTTCSSCTTC-----------SSCCCCCCEEEEECCSSCC-------
T ss_pred Cc-ccchhhh---hcccCccCEEECcCC-cCCCcchhhhcccc-----------cccccCCCCCEEECcCCcc-------
Confidence 11 1110000 111234555555554 33333333222000 0000223444444444331
Q ss_pred ceeEEEEeccchhhHhhhhhhhhcccccc-cCCCCCCcEEEeccCCCcccccccCC---------CCCccEEEEecCCCC
Q 048135 848 KVEYLKVVRCEELIYLWQNEIWLEKTPIR-LHGLTSPKKLCIENCQRLVSFQEVCF---------LPILGELEIKNCSAL 917 (1189)
Q Consensus 848 ~L~~L~l~~~~~l~~l~~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~---------l~~L~~L~l~~c~~l 917 (1189)
..+|.. +..+++|++|++++|... .+|.... +++|+.|++++| .+
T Consensus 446 -----------------------~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l 500 (636)
T 4eco_A 446 -----------------------SKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN-KL 500 (636)
T ss_dssp -----------------------CSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-CC
T ss_pred -----------------------CcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC-cC
Confidence 122222 234566666666665432 4433111 115666666664 34
Q ss_pred CCCccccc-cCCCccceEEEccCCCccccccc-CCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCC
Q 048135 918 KFLPEGMK-HNNVCLECLLIEGCNSLKFVVKG-QLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLG 995 (1189)
Q Consensus 918 ~~lp~~~~-~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~ 995 (1189)
+.+|..+. ..+++|+.|++++|..-. +|.. ..+++|+.|+++++..
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~------------------------------- 548 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD------------------------------- 548 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBC-------------------------------
T ss_pred CccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcc-------------------------------
Confidence 45555544 355566666665543222 3221 1234444444444321
Q ss_pred ccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCC
Q 048135 996 ENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCEN 1051 (1189)
Q Consensus 996 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~ 1051 (1189)
+++|...+.+|..+..+++|+.|++++|. ++.+|.. +.++|+.|++++|+.
T Consensus 549 ---ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 549 ---AQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp ---TTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTT
T ss_pred ---cccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCC
Confidence 13455567788889999999999999985 5888875 447999999999643
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.4e-27 Score=297.26 Aligned_cols=177 Identities=18% Similarity=0.107 Sum_probs=112.0
Q ss_pred cceEEEeccCCCcccC-ccccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccCch-hhhccccCCcccc
Q 048135 525 KLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKWPS-KVMNLINLRHLDI 601 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l 601 (1189)
++++|||++|.|+.+| .+|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++| .++.+|. .+.+|++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEEC
Confidence 6888888888888885 578888889999998888888865 5788888999998888 5777775 4688888888888
Q ss_pred cCCcccccCCCC-CCCCCCCceeCceecccCccccCCCCc-chhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCC-
Q 048135 602 TDVHLIKEMPLG-MEEWKCLQTLSNFIVSEGLENATDLQD-PTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHT- 678 (1189)
Q Consensus 602 ~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~- 678 (1189)
++|. +..+|.. |+++++|++|+..... +.. .....+..+++|+.|+++.+.-. ......+..+....
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N~--------l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELNVAHNL--------IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPL 201 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSC--------CCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTT
T ss_pred CCCc-CCCCChhhhhcCcccCeeccccCc--------cccCCCchhhccchhhhhhcccCcccc-ccccccccchhhhhh
Confidence 8887 6666654 7888888888653221 111 12233556677777777654211 11111111121111
Q ss_pred CcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCC
Q 048135 679 SLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCT 714 (1189)
Q Consensus 679 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~ 714 (1189)
....+.++.+....++.... ....+..+.+.++.
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~--~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNF 235 (635)
T ss_dssp CCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCC
T ss_pred hhhhhhcccCcccccCcccc--cchhhhhhhhhccc
Confidence 22345555555554443322 23445666666553
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.2e-28 Score=289.89 Aligned_cols=444 Identities=17% Similarity=0.090 Sum_probs=214.8
Q ss_pred CcceEEEeccCCCcccC-ccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCchhhhccccCCcccc
Q 048135 524 KKLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDI 601 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 601 (1189)
++|++|++++|.++.++ ..|.++++|++|+|++|.++.+ |..++++++|++|++++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 45666666666666554 4566666666666666666655 455666666666666665 45556554 5666666666
Q ss_pred cCCcccc-cCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCc
Q 048135 602 TDVHLIK-EMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSL 680 (1189)
Q Consensus 602 ~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L 680 (1189)
++|.... .+|..++++++|++| +++++.-. . ..+..+++|
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L--------------------------------~L~~n~l~----~---~~~~~l~~L 138 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFL--------------------------------GLSTTHLE----K---SSVLPIAHL 138 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEE--------------------------------EEEESSCC----G---GGGGGGTTS
T ss_pred cCCccccccchhhhccCCcceEE--------------------------------EecCcccc----h---hhccccccc
Confidence 6665222 234455555555555 33332100 0 112233444
Q ss_pred --ceEEEeeeCC---CCCCCCCCCCCCC-ceeEEEecCCCCCCCCC--CCCcccCcceEeeccccCc---eEeCccccCC
Q 048135 681 --KELTIKCYGG---TRFPSWVGDPSFS-NIVMITLESCTNCRSLP--SLGLLCSLKALTIREMTEL---KIIGSEIYGD 749 (1189)
Q Consensus 681 --~~L~l~~~~~---~~~p~~~~~~~~~-~L~~L~l~~~~~~~~lp--~l~~l~~L~~L~L~~~~~l---~~~~~~~~~~ 749 (1189)
+.|+++++.. ...|.++.. +. +...+++++|.....++ .+..+++|+.|+++++... ..+....
T Consensus 139 ~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--- 213 (520)
T 2z7x_B 139 NISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL--- 213 (520)
T ss_dssp CEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH---
T ss_pred eeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch---
Confidence 7777777665 234554432 22 34455666666555554 3566777777777765310 0000000
Q ss_pred CCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCCCCCCccEEEEeccCCcccccCCCCc
Q 048135 750 GCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPDHLPSLKKLVISECAQFEVSFASLPV 829 (1189)
Q Consensus 750 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c~~~~~~~~~l~~ 829 (1189)
.....+++|+.|.+.++.--.... ... ......++|++|++++| .+.+.+|..+-.. ....+++
T Consensus 214 ~~l~~l~~L~~L~l~~~~l~~~~~-~~~-~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~-------------~~~~l~~ 277 (520)
T 2z7x_B 214 AKLQTNPKLSNLTLNNIETTWNSF-IRI-LQLVWHTTVWYFSISNV-KLQGQLDFRDFDY-------------SGTSLKA 277 (520)
T ss_dssp HGGGGCTTCCEEEEEEEEEEHHHH-HHH-HHHHHTSSCSEEEEEEE-EEESCCCCCCCCC-------------CSCCCCE
T ss_pred hhhccccchhhccccccccCHHHH-HHH-HHHhhhCcccEEEeecc-cccCccccchhhc-------------ccccCce
Confidence 000123444444443321100000 000 00001224444444444 3333333221000 0033344
Q ss_pred cceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhcccc-cccCC---CCCCcEEEeccCCCcccccccCCCCC
Q 048135 830 LSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTP-IRLHG---LTSPKKLCIENCQRLVSFQEVCFLPI 905 (1189)
Q Consensus 830 L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~-~~~~~---l~~L~~L~l~~~~~l~~~~~~~~l~~ 905 (1189)
|+.++++++.. . +| ..+.. -++|+.|++++|.. ...+....+++
T Consensus 278 L~~l~l~~n~~-~------------------------------~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~ 325 (520)
T 2z7x_B 278 LSIHQVVSDVF-G------------------------------FPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISP 325 (520)
T ss_dssp EEEEEEEECCC-C------------------------------SCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCC
T ss_pred eEeccccccce-e------------------------------cchhhhhcccccCceeEEEcCCCcc-ccccchhhCCc
Confidence 44444444331 0 11 00111 13466666666542 22221134566
Q ss_pred ccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCccchhhh
Q 048135 906 LGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKY 985 (1189)
Q Consensus 906 L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~ 985 (1189)
|++|++++|.....+|..+. .+++|++|++++|..-. ++. ++
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~-l~~--------------------~~---------------- 367 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKE-LSK--------------------IA---------------- 367 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCB-HHH--------------------HH----------------
T ss_pred ccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCc-ccc--------------------ch----------------
Confidence 66666666543333444332 45555555555543211 110 00
Q ss_pred hccccCCCCCccccccccccccCCCC-CCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCc
Q 048135 986 LYVSYGRSLGENMTWKFEIRKSMPES-PINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSS 1064 (1189)
Q Consensus 986 l~l~~~~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~ 1064 (1189)
-.+..+++|+.|++++|.....+|.. +..+++|++|++++|.....+|. .++++|+.|++++| .++.+|..+..+++
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~ 445 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSN-KIKSIPKQVVKLEA 445 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-SCCTTCCEEECCSS-CCCCCCGGGGGCTT
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh-hhcccCCEEECCCC-cccccchhhhcCCC
Confidence 01222334444444444433334432 55677888888888854444443 33468888888884 56678777767777
Q ss_pred cccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCccc
Q 048135 1065 LQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVS 1114 (1189)
Q Consensus 1065 L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1114 (1189)
|++|++ +.+.++.++...+..+++|++|++++|+....
T Consensus 446 L~~L~L------------~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 446 LQELNV------------ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCEEEC------------CSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEEC------------CCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 777776 34556666665577777888888887755433
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=286.44 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=71.9
Q ss_pred eEEEeccCCCcccCccccCcccccEEecccccccccc-ccccCCCCCcEEeccCccccccC-chhhhccccCCcccccCC
Q 048135 527 RVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLP-ESTCSLINLQTLLLRRCFYLMKW-PSKVMNLINLRHLDITDV 604 (1189)
Q Consensus 527 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 604 (1189)
++||++++.++.+|..+. ++|++|+|++|.+..+| ..+.++++|++|++++| .+..+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 689999999999998886 89999999999999886 57999999999999998 45555 778999999999999998
Q ss_pred cccccCCCC
Q 048135 605 HLIKEMPLG 613 (1189)
Q Consensus 605 ~~~~~~p~~ 613 (1189)
. +..+|..
T Consensus 80 ~-l~~lp~~ 87 (520)
T 2z7x_B 80 K-LVKISCH 87 (520)
T ss_dssp C-CCEEECC
T ss_pred c-eeecCcc
Confidence 7 5566643
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.7e-27 Score=292.46 Aligned_cols=383 Identities=16% Similarity=0.155 Sum_probs=227.0
Q ss_pred hccCCCCCCcceEEEeeeCCCC------------------CCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceE
Q 048135 671 LGMLKSHTSLKELTIKCYGGTR------------------FPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKAL 731 (1189)
Q Consensus 671 l~~l~~~~~L~~L~l~~~~~~~------------------~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L 731 (1189)
+..+..+++|++|+++++.... +|..++...+++|+.|++++|.....+| .++.+++|+.|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 3445666777777777776666 6666541136677777777776666666 46667777777
Q ss_pred eeccccCce--EeCccccCCCCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCCCCCCc
Q 048135 732 TIREMTELK--IIGSEIYGDGCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPDHLPSL 809 (1189)
Q Consensus 732 ~L~~~~~l~--~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L 809 (1189)
+++++..+. .++..+ .+|. ....+++|++|++++| .+. .+|.
T Consensus 279 ~Ls~n~~l~~~~lp~~~---------~~L~--------------------~~~~l~~L~~L~L~~n-~l~-~ip~----- 322 (636)
T 4eco_A 279 NVACNRGISGEQLKDDW---------QALA--------------------DAPVGEKIQIIYIGYN-NLK-TFPV----- 322 (636)
T ss_dssp ECTTCTTSCHHHHHHHH---------HHHH--------------------HSGGGGTCCEEECCSS-CCS-SCCC-----
T ss_pred ECcCCCCCccccchHHH---------Hhhh--------------------ccccCCCCCEEECCCC-cCC-ccCc-----
Confidence 776654222 122110 0000 0123466777777766 444 4442
Q ss_pred cEEEEeccCCcccccCCCCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEec
Q 048135 810 KKLVISECAQFEVSFASLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIE 889 (1189)
Q Consensus 810 ~~L~l~~c~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~ 889 (1189)
...+..+++|++|++++|... +.+| .+..+++|++|+++
T Consensus 323 -----------~~~l~~l~~L~~L~L~~N~l~-----------------------------g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 323 -----------ETSLQKMKKLGMLECLYNQLE-----------------------------GKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp -----------HHHHTTCTTCCEEECCSCCCE-----------------------------EECC-CCEEEEEESEEECC
T ss_pred -----------hhhhccCCCCCEEeCcCCcCc-----------------------------cchh-hhCCCCCCCEEECC
Confidence 002334444555555544311 1344 45555667777777
Q ss_pred cCCCcccccc-cCCCCC-ccEEEEecCCCCCCCcccccc-CCCccceEEEccCCCcccccccCCCCCcceEEeecccCcc
Q 048135 890 NCQRLVSFQE-VCFLPI-LGELEIKNCSALKFLPEGMKH-NNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLK 966 (1189)
Q Consensus 890 ~~~~l~~~~~-~~~l~~-L~~L~l~~c~~l~~lp~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~ 966 (1189)
+|. +..+|. ...+++ |++|++++|. ++.+|..+.. .+++|+.|++++|......|..
T Consensus 362 ~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~------------------ 421 (636)
T 4eco_A 362 YNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN------------------ 421 (636)
T ss_dssp SSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS------------------
T ss_pred CCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhh------------------
Confidence 764 334443 334566 7777777653 4466654431 1235666666665433222211
Q ss_pred ccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCC-CCCCCccceEeeccCCCCcccCCCCCC-------
Q 048135 967 HLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPES-PINLECLHQIYIWDCSSFTSFPKGGLP------- 1038 (1189)
Q Consensus 967 ~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~------- 1038 (1189)
.... ......+++|+.|++++|... .+|.. +..+++|++|++++|. ++.+|...+.
T Consensus 422 -----l~~~---------~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 422 -----FDPL---------DPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFK 485 (636)
T ss_dssp -----SCTT---------CSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECT
T ss_pred -----hccc---------ccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccccccc
Confidence 0000 000012334445555554433 45544 3458999999999984 6688775432
Q ss_pred --CCcCeEEEeccCCCcccccccc--CCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcc------
Q 048135 1039 --NTLSRISIGKCENLVALPDRMH--NLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGG------ 1108 (1189)
Q Consensus 1039 --~~L~~L~l~~c~~l~~lp~~~~--~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~------ 1108 (1189)
++|++|++++| .++.+|..+. .+++|+.|++ +.+.++.+|. .+..+++|++|++++
T Consensus 486 ~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~L------------s~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 486 NTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDL------------SYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp TGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEEC------------CSSCCSSCCC-GGGGCSSCCEEECCSCBCTTC
T ss_pred ccCCccEEECcCC-cCCccChhhhhccCCCcCEEEC------------CCCCCCCcCh-hhhcCCCCCEEECCCCccccc
Confidence 18999999995 5668998876 8888888888 4456666554 577899999999954
Q ss_pred cCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCCC----------CCCCcce
Q 048135 1109 CLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEVG----------LPSSLLQ 1178 (1189)
Q Consensus 1109 c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~----------~~~sL~~ 1178 (1189)
|...+.+|... ..+++|+.|++++| .++.+| ..+. ++|+.|++++|+ +.+++..+ .+...+.
T Consensus 552 N~l~~~~p~~l---~~l~~L~~L~Ls~N-~l~~ip-~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~ 623 (636)
T 4eco_A 552 NRTLREWPEGI---TLCPSLTQLQIGSN-DIRKVN-EKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKT 623 (636)
T ss_dssp CBCCCCCCTTG---GGCSSCCEEECCSS-CCCBCC-SCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTT
T ss_pred CcccccChHHH---hcCCCCCEEECCCC-cCCccC-HhHh--CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCc
Confidence 54566778765 56799999999999 459999 5554 899999999975 33333111 1223456
Q ss_pred eeecCCCCCC
Q 048135 1179 LYIDGCPLLK 1188 (1189)
Q Consensus 1179 L~i~~c~~L~ 1188 (1189)
.++.+||.|+
T Consensus 624 ~~i~~C~~L~ 633 (636)
T 4eco_A 624 QDIRGCDALD 633 (636)
T ss_dssp SEEESCGGGC
T ss_pred cccCCCcccc
Confidence 7899999875
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=9.9e-26 Score=280.42 Aligned_cols=93 Identities=25% Similarity=0.345 Sum_probs=75.3
Q ss_pred EEEeccCCCcccCccccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccCch-hhhccccCCcccccCCc
Q 048135 528 VLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKWPS-KVMNLINLRHLDITDVH 605 (1189)
Q Consensus 528 ~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 605 (1189)
+.+-++-+++.+|..+. .++++|+|++|.|+.+|+ +|.++++|++|||++| .+..+|+ .+.+|++|++|+|++|.
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc
Confidence 34555667889998763 589999999999999975 6999999999999999 6788765 58999999999999997
Q ss_pred ccccCCCC-CCCCCCCceeC
Q 048135 606 LIKEMPLG-MEEWKCLQTLS 624 (1189)
Q Consensus 606 ~~~~~p~~-i~~L~~L~~L~ 624 (1189)
+..+|.+ |++|++|++|+
T Consensus 112 -l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 112 -IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp -CCEECGGGGTTCTTCCEEE
T ss_pred -CCCCCHHHhcCCCCCCEEE
Confidence 7777653 56666666653
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=8.8e-27 Score=283.46 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=72.5
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEecccccccccc-ccccCCCCCcEEeccCccccccC-chhhhccccCCcccc
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLP-ESTCSLINLQTLLLRRCFYLMKW-PSKVMNLINLRHLDI 601 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 601 (1189)
...++++++++.++.+|..+. ++|++|++++|.|..+| ..++++++|++|++++| .+..+ |..+.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence 345889999999998887764 78999999999998886 57889999999999988 45555 667888999999999
Q ss_pred cCCcccccCCCCCCCCCCCcee
Q 048135 602 TDVHLIKEMPLGMEEWKCLQTL 623 (1189)
Q Consensus 602 ~~~~~~~~~p~~i~~L~~L~~L 623 (1189)
++|. +..+|.. .+++|++|
T Consensus 108 s~N~-l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 108 SHNR-LQNISCC--PMASLRHL 126 (562)
T ss_dssp TTSC-CCEECSC--CCTTCSEE
T ss_pred CCCc-CCccCcc--ccccCCEE
Confidence 8887 6666654 44444444
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3.7e-26 Score=267.51 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=42.4
Q ss_pred CCcceEEEeccCCCcccCccccCcccccEEeccccccc-cccccccCCCCCcEEeccCccccccCchhhhccccCCcccc
Q 048135 523 FKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAIS-SLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDI 601 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 601 (1189)
.++|++|++++|.+..+|++|+++++|++|++++|.+. .+|.+++++++|+++++++|.. .+|++|++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 46899999999999999999999999999999999887 7899999999988777777631 56777888
Q ss_pred cCCcccccCCC
Q 048135 602 TDVHLIKEMPL 612 (1189)
Q Consensus 602 ~~~~~~~~~p~ 612 (1189)
++|. +..+|.
T Consensus 79 ~~~~-l~~lp~ 88 (454)
T 1jl5_A 79 NNLG-LSSLPE 88 (454)
T ss_dssp TTSC-CSCCCS
T ss_pred cCCc-cccCCC
Confidence 7776 555554
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.9e-26 Score=284.78 Aligned_cols=365 Identities=14% Similarity=0.097 Sum_probs=189.3
Q ss_pred CcccCccccCcccccEEecccccccc------------------cccccc--CCCCCcEEeccCccccccCchhhhcccc
Q 048135 536 IIELPNSIGRLMHLRYLDMSNTAISS------------------LPESTC--SLINLQTLLLRRCFYLMKWPSKVMNLIN 595 (1189)
Q Consensus 536 ~~~lp~~i~~l~~L~~L~L~~~~i~~------------------LP~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 595 (1189)
++.+|..|+++++|++|+|++|.++. +|+.++ ++++|++|+|++|.....+|..+++|++
T Consensus 437 L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred ccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 33355566666666666666666655 566655 6666666666665555556666666666
Q ss_pred CCcccccCCc-ccc-cCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhc-
Q 048135 596 LRHLDITDVH-LIK-EMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLG- 672 (1189)
Q Consensus 596 L~~L~l~~~~-~~~-~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~- 672 (1189)
|++|++++|. ... .+|..+++++ ..+..+++|+.|+++.+.-. .++.
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~-------------------------~~~~~l~~L~~L~Ls~N~L~-----~ip~~ 566 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLA-------------------------DDEDTGPKIQIFYMGYNNLE-----EFPAS 566 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHH-------------------------HCTTTTTTCCEEECCSSCCC-----BCCCH
T ss_pred CCEEECcCCCCcccccchHHHHhhh-------------------------hcccccCCccEEEeeCCcCC-----ccCCh
Confidence 6666666654 222 3554443333 00112223444444322110 1122
Q ss_pred -cCCCCCCcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccC-cceEeeccccCceEeCccccCC
Q 048135 673 -MLKSHTSLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCS-LKALTIREMTELKIIGSEIYGD 749 (1189)
Q Consensus 673 -~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~-L~~L~L~~~~~l~~~~~~~~~~ 749 (1189)
.+..+++|+.|++++|.+..+| .++ .+++|+.|++++|... .+| .+..+++ |+.|+++++. +..++..+..
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~--~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~- 640 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFG--TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNA- 640 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCC--TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCT-
T ss_pred hhhhcCCCCCEEECCCCCcccch-hhc--CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhc-
Confidence 3445556666666666655566 333 3566666666666544 455 4666666 6666666553 2233321110
Q ss_pred CCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC----CCCCccEEEEeccCCcccccC
Q 048135 750 GCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD----HLPSLKKLVISECAQFEVSFA 825 (1189)
Q Consensus 750 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~----~l~~L~~L~l~~c~~~~~~~~ 825 (1189)
...++|+.|.+.++..................++|+.|++++| .+. .+|. .+++|+.|++++|........
T Consensus 641 ---~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 641 ---KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQ-KFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp ---TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred ---cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCC-ccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 1123355555554322111110000000112346777777776 454 4553 356666666666533211000
Q ss_pred CCCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhcccccccC--CCCCCcEEEeccCCCccccc-ccCC
Q 048135 826 SLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLH--GLTSPKKLCIENCQRLVSFQ-EVCF 902 (1189)
Q Consensus 826 ~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~--~l~~L~~L~l~~~~~l~~~~-~~~~ 902 (1189)
.+..+. .....+++|+.|++++|. +..+|..+. .+++|+.|++++|... .+| ....
T Consensus 716 ~~~~~~---------~~l~nl~~L~~L~Ls~N~-----------L~~lp~~l~~~~l~~L~~L~Ls~N~L~-~lp~~l~~ 774 (876)
T 4ecn_A 716 SLKPKD---------GNYKNTYLLTTIDLRFNK-----------LTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLN 774 (876)
T ss_dssp SSSCTT---------SCCTTGGGCCEEECCSSC-----------CCCCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGGG
T ss_pred Hhcccc---------ccccccCCccEEECCCCC-----------CccchHHhhhccCCCcCEEEeCCCCCC-ccchhhhc
Confidence 000000 000112244444444442 234566665 7888888888887543 354 3556
Q ss_pred CCCccEEEEec------CCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeecccCc
Q 048135 903 LPILGELEIKN------CSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKL 965 (1189)
Q Consensus 903 l~~L~~L~l~~------c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l 965 (1189)
+++|+.|++++ |.....+|..+. .+++|+.|++++|.. ..+|.. +.++|+.|++++|+..
T Consensus 775 L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~-~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 775 SSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNI 840 (876)
T ss_dssp CTTCCEEECCCCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTC
T ss_pred CCCCCEEECCCCCCcccccccccChHHHh-cCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCC
Confidence 78888888876 444556676665 688888888888765 767665 4468888888887643
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.8e-26 Score=268.49 Aligned_cols=421 Identities=20% Similarity=0.233 Sum_probs=182.0
Q ss_pred CccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCCcccccCCCCCCCCCC
Q 048135 540 PNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDVHLIKEMPLGMEEWKC 619 (1189)
Q Consensus 540 p~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~ 619 (1189)
|+.+ +..+|++|++++|.+.++|+++++|++|++|++++|.....+|.+++++++|+.+++.+|..
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------- 70 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------- 70 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------
Confidence 3344 34666777777766666666666666666666666644445666666666666665554430
Q ss_pred CceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCCCCCC
Q 048135 620 LQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPSWVGD 699 (1189)
Q Consensus 620 L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 699 (1189)
.+++.|+++++..+.+|..
T Consensus 71 ----------------------------------------------------------~~l~~L~l~~~~l~~lp~~--- 89 (454)
T 1jl5_A 71 ----------------------------------------------------------RQAHELELNNLGLSSLPEL--- 89 (454)
T ss_dssp ----------------------------------------------------------HTCSEEECTTSCCSCCCSC---
T ss_pred ----------------------------------------------------------cCCCEEEecCCccccCCCC---
Confidence 1233444444545555542
Q ss_pred CCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCccccCCCCCCCCCccceeeccCcccccccCcCCccc
Q 048135 700 PSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLETLCFRDLQEWELWDPIGKNE 779 (1189)
Q Consensus 700 ~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~ 779 (1189)
.++|+.|++++|... .+|.. +++|+.|+++++. +..++
T Consensus 90 --~~~L~~L~l~~n~l~-~lp~~--~~~L~~L~l~~n~-l~~l~------------------------------------ 127 (454)
T 1jl5_A 90 --PPHLESLVASCNSLT-ELPEL--PQSLKSLLVDNNN-LKALS------------------------------------ 127 (454)
T ss_dssp --CTTCSEEECCSSCCS-SCCCC--CTTCCEEECCSSC-CSCCC------------------------------------
T ss_pred --cCCCCEEEccCCcCC-ccccc--cCCCcEEECCCCc-cCccc------------------------------------
Confidence 246666666666433 24432 2566666665531 11000
Q ss_pred ccccCCcccEEeecCCCCccCCCCC--CCCCccEEEEeccCCcccccCCCCccceEEEecCCCceeecccceeEEEEecc
Q 048135 780 YVESFPLLRELSIVKCPKLSGRLPD--HLPSLKKLVISECAQFEVSFASLPVLSDLSIDGCKGLVCESFQKVEYLKVVRC 857 (1189)
Q Consensus 780 ~~~~~~~L~~L~l~~c~~L~~~~p~--~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~ 857 (1189)
...++|++|++++| .+. .+|. .+++|++|++++|.... .....+ +|+.|+++++
T Consensus 128 --~~~~~L~~L~L~~n-~l~-~lp~~~~l~~L~~L~l~~N~l~~-lp~~~~-------------------~L~~L~L~~n 183 (454)
T 1jl5_A 128 --DLPPLLEYLGVSNN-QLE-KLPELQNSSFLKIIDVDNNSLKK-LPDLPP-------------------SLEFIAAGNN 183 (454)
T ss_dssp --SCCTTCCEEECCSS-CCS-SCCCCTTCTTCCEEECCSSCCSC-CCCCCT-------------------TCCEEECCSS
T ss_pred --CCCCCCCEEECcCC-CCC-CCcccCCCCCCCEEECCCCcCcc-cCCCcc-------------------cccEEECcCC
Confidence 01246777777776 555 3442 34556666666653221 111122 4444444443
Q ss_pred chhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEc
Q 048135 858 EELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIE 937 (1189)
Q Consensus 858 ~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~ 937 (1189)
. +..+| .+..+++|+.|++++|. ++.+|. .+++|++|++++| .++.+|. +..+++|++|+++
T Consensus 184 ~-----------l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~--~~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 184 Q-----------LEELP-ELQNLPFLTAIYADNNS-LKKLPD--LPLSLESIVAGNN-ILEELPE--LQNLPFLTTIYAD 245 (454)
T ss_dssp C-----------CSSCC-CCTTCTTCCEEECCSSC-CSSCCC--CCTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECC
T ss_pred c-----------CCcCc-cccCCCCCCEEECCCCc-CCcCCC--CcCcccEEECcCC-cCCcccc--cCCCCCCCEEECC
Confidence 2 23345 57788889999998874 444543 2468899999887 5667774 4478888888888
Q ss_pred cCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCc
Q 048135 938 GCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLEC 1017 (1189)
Q Consensus 938 ~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~ 1017 (1189)
+|. ++.++. .+++|+.|++++|. ++.++. ..++|+.|++++|...+ +|.. .++
T Consensus 246 ~N~-l~~l~~--~~~~L~~L~l~~N~-l~~l~~-------------------~~~~L~~L~ls~N~l~~-l~~~---~~~ 298 (454)
T 1jl5_A 246 NNL-LKTLPD--LPPSLEALNVRDNY-LTDLPE-------------------LPQSLTFLDVSENIFSG-LSEL---PPN 298 (454)
T ss_dssp SSC-CSSCCS--CCTTCCEEECCSSC-CSCCCC-------------------CCTTCCEEECCSSCCSE-ESCC---CTT
T ss_pred CCc-CCcccc--cccccCEEECCCCc-ccccCc-------------------ccCcCCEEECcCCccCc-ccCc---CCc
Confidence 764 444443 35678888888753 333331 12345555555544322 2211 145
Q ss_pred cceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCC
Q 048135 1018 LHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHK 1097 (1189)
Q Consensus 1018 L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~ 1097 (1189)
|+.|++++| .++.++ .++++|++|++++| .+..+|.. +++|++|++ + .+.++.++. .
T Consensus 299 L~~L~l~~N-~l~~i~--~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L-----------~-~N~l~~lp~----~ 355 (454)
T 1jl5_A 299 LYYLNASSN-EIRSLC--DLPPSLEELNVSNN-KLIELPAL---PPRLERLIA-----------S-FNHLAEVPE----L 355 (454)
T ss_dssp CCEEECCSS-CCSEEC--CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEEC-----------C-SSCCSCCCC----C
T ss_pred CCEEECcCC-cCCccc--CCcCcCCEEECCCC-cccccccc---CCcCCEEEC-----------C-CCccccccc----h
Confidence 666666665 344443 23346666666663 34445432 233333333 3 234444443 3
Q ss_pred CCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCCCCCCCcc
Q 048135 1098 LTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEVGLPSSLL 1177 (1189)
Q Consensus 1098 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~ 1177 (1189)
+++|++|++++|...+ +|. .|.++..|. .|...+.+| . .+++|+.|++++| .+..+|. .|++|+
T Consensus 356 l~~L~~L~L~~N~l~~-l~~------ip~~l~~L~--~n~~~~~i~-~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~ 419 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLRE-FPD------IPESVEDLR--MNSHLAEVP-E---LPQNLKQLHVETN-PLREFPD--IPESVE 419 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCC------CCTTCCEEE--CCC----------------------------------------
T ss_pred hhhccEEECCCCCCCc-CCC------ChHHHHhhh--hcccccccc-c---ccCcCCEEECCCC-cCCcccc--chhhHh
Confidence 4566666666643322 221 112222222 222333333 1 1378888888885 4444443 456777
Q ss_pred eeeecCCC
Q 048135 1178 QLYIDGCP 1185 (1189)
Q Consensus 1178 ~L~i~~c~ 1185 (1189)
.|.+.+|.
T Consensus 420 ~L~~~~~~ 427 (454)
T 1jl5_A 420 DLRMNSER 427 (454)
T ss_dssp --------
T ss_pred heeCcCcc
Confidence 77777653
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=8.7e-26 Score=274.69 Aligned_cols=440 Identities=17% Similarity=0.124 Sum_probs=255.6
Q ss_pred CcceEEEeccCCCcccC-ccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCchhhhccccCCcccc
Q 048135 524 KKLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDI 601 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 601 (1189)
++|++|++++|.+..+| ..|+++++|++|+|++|.|+.+ |..++++++|++|++++| .+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 68999999999999886 6899999999999999999988 667999999999999998 67889887 8999999999
Q ss_pred cCCcccccC--CCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 602 TDVHLIKEM--PLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 602 ~~~~~~~~~--p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
++|. +..+ |..++++++|++|+..... +.. ..+..+..+ +
T Consensus 129 s~N~-l~~l~~p~~~~~l~~L~~L~L~~n~--------l~~----------------------------~~~~~l~~L-~ 170 (562)
T 3a79_B 129 SFND-FDVLPVCKEFGNLTKLTFLGLSAAK--------FRQ----------------------------LDLLPVAHL-H 170 (562)
T ss_dssp CSSC-CSBCCCCGGGGGCTTCCEEEEECSB--------CCT----------------------------TTTGGGTTS-C
T ss_pred CCCC-ccccCchHhhcccCcccEEecCCCc--------ccc----------------------------Cchhhhhhc-e
Confidence 9998 5554 4678888888877542211 000 011111222 3
Q ss_pred cceEEEeeeCC--CC-CCCCCCCCCCCceeEEEecCCCCCCCCC--CCCcccCcceEeeccccC----ceEeCccccCCC
Q 048135 680 LKELTIKCYGG--TR-FPSWVGDPSFSNIVMITLESCTNCRSLP--SLGLLCSLKALTIREMTE----LKIIGSEIYGDG 750 (1189)
Q Consensus 680 L~~L~l~~~~~--~~-~p~~~~~~~~~~L~~L~l~~~~~~~~lp--~l~~l~~L~~L~L~~~~~----l~~~~~~~~~~~ 750 (1189)
|+.|+++++.. .. .|.++....... ..+++++|.....++ .+..+++|+.|+++++.. +......+
T Consensus 171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~-l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l---- 245 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETESLQIPNTTV-LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL---- 245 (562)
T ss_dssp EEEEEEEESSCCCCSSSCCEEEECCEEE-EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHH----
T ss_pred eeEEEeecccccccccCcccccccCcce-EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHH----
Confidence 36777776654 22 343332211112 245666665544444 355677788887776421 00000011
Q ss_pred CCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCCCC-----CCccEEEEeccCCcccccC
Q 048135 751 CSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPDHL-----PSLKKLVISECAQFEVSFA 825 (1189)
Q Consensus 751 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l-----~~L~~L~l~~c~~~~~~~~ 825 (1189)
...++|+.|.+.++.--... .... ......++|++|++++| .+.+.+|..+ ++|+.|.+.++
T Consensus 246 --~~l~~L~~L~L~~~~l~~~~-~~~~-~~~~~~~~L~~L~l~~n-~l~~~ip~~~~~~~~~~L~~L~~~~~-------- 312 (562)
T 3a79_B 246 --TRGPTLLNVTLQHIETTWKC-SVKL-FQFFWPRPVEYLNIYNL-TITERIDREEFTYSETALKSLMIEHV-------- 312 (562)
T ss_dssp --HSCSSCEEEEEEEEEECHHH-HHHH-HHHHTTSSEEEEEEEEE-EECSCCCCCCCCCCSCSCCEEEEEEE--------
T ss_pred --hccCcceEEEecCCcCcHHH-HHHH-HHhhhcccccEEEEecc-Eeeccccchhhhcccccchheehhhc--------
Confidence 12455555555443211000 0000 00112347777777777 5555666544 44444443332
Q ss_pred CCCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccccCCCCC
Q 048135 826 SLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQEVCFLPI 905 (1189)
Q Consensus 826 ~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~ 905 (1189)
..+.. .++. ..+ ..+....+|++|++++|.. ...+....+++
T Consensus 313 ----------~~~~~----~~p~---------~~~--------------~~~~~~~~L~~L~l~~n~~-~~~~~~~~l~~ 354 (562)
T 3a79_B 313 ----------KNQVF----LFSK---------EAL--------------YSVFAEMNIKMLSISDTPF-IHMVCPPSPSS 354 (562)
T ss_dssp ----------EECCC----SSCH---------HHH--------------HHHHHTCCCSEEEEESSCC-CCCCCCSSCCC
T ss_pred ----------cccee----ecCh---------hhh--------------hhhhccCcceEEEccCCCc-ccccCccCCCC
Confidence 22110 0000 000 0000114566666666543 22221245667
Q ss_pred ccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccc----cCCCCCcceEEeecccCccccccccCCCCCCccc
Q 048135 906 LGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVK----GQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTS 981 (1189)
Q Consensus 906 L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 981 (1189)
|++|++++|.....+|..+. .+++|+.|++++|. ++.++. ...+++|+.|++++|
T Consensus 355 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N------------------- 413 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLN------------------- 413 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTS-------------------
T ss_pred ceEEECCCCccccchhhhhc-ccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCC-------------------
Confidence 77777777643333454443 67777777777753 332211 122344555555543
Q ss_pred hhhhhccccCCCCCccccccccccccCCC-CCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCcccccccc
Q 048135 982 IIKYLYVSYGRSLGENMTWKFEIRKSMPE-SPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMH 1060 (1189)
Q Consensus 982 ~l~~l~l~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~ 1060 (1189)
.....+|. .+..+++|++|++++|.....+|. .++++|++|++++| .++.+|..+.
T Consensus 414 ---------------------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~~L~~L~L~~N-~l~~ip~~~~ 470 (562)
T 3a79_B 414 ---------------------SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNN-RIMSIPKDVT 470 (562)
T ss_dssp ---------------------CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-SCCTTCSEEECCSS-CCCCCCTTTT
T ss_pred ---------------------cCCCccChhhhcCcccCCEEECCCCCCCcchhh-hhcCcCCEEECCCC-cCcccChhhc
Confidence 22222333 355678888888888854344443 34468999999885 6778887777
Q ss_pred CCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCc
Q 048135 1061 NLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFP 1116 (1189)
Q Consensus 1061 ~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1116 (1189)
++++|++|++ +.|.++.+++..+..+++|+.|++++|+.....+
T Consensus 471 ~l~~L~~L~L------------~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 471 HLQALQELNV------------ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SSCCCSEEEC------------CSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCCEEEC------------CCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 8888888777 4566777776668888889999998886654443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.2e-24 Score=251.29 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=74.0
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++| .+..+| ++++++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 456778999999999888887 6888899999999999888886 888899999999988 567775 7888889999
Q ss_pred cccCCcccccCCCCCCCCCCCcee
Q 048135 600 DITDVHLIKEMPLGMEEWKCLQTL 623 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~i~~L~~L~~L 623 (1189)
++++|. +..+| ++.+++|++|
T Consensus 112 ~L~~N~-l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 112 NCDTNK-LTKLD--VSQNPLLTYL 132 (457)
T ss_dssp ECCSSC-CSCCC--CTTCTTCCEE
T ss_pred ECCCCc-CCeec--CCCCCcCCEE
Confidence 888886 44443 4444444433
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.8e-23 Score=247.68 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=67.7
Q ss_pred CCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCccccc
Q 048135 523 FKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDIT 602 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 602 (1189)
+++|+.|+++++.+..+|. +..+++|++|++++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECC
Confidence 3467788888887777764 7777888888888888877776 778888888888877 5666665 7788888888887
Q ss_pred CCcccccCCCCCCCCCCCcee
Q 048135 603 DVHLIKEMPLGMEEWKCLQTL 623 (1189)
Q Consensus 603 ~~~~~~~~p~~i~~L~~L~~L 623 (1189)
+|. +..+|. ++++++|++|
T Consensus 121 ~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 121 NNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEE
T ss_pred CCC-CCCChH-HcCCCCCCEE
Confidence 775 555543 4444444444
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.5e-23 Score=246.65 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCC--CCCCCcCeEEEeccCCCccccccccCCCcccccc
Q 048135 992 RSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKG--GLPNTLSRISIGKCENLVALPDRMHNLSSLQELE 1069 (1189)
Q Consensus 992 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~--~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 1069 (1189)
++|+.+++++|......|..+..+++|++|++++|. ++.++.. ...++|++|++++|......|..+.++++|++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 445555555555555556667777788888887774 4444332 2234677777776433222244555555555555
Q ss_pred ccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCccc
Q 048135 1070 ICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHL 1142 (1189)
Q Consensus 1070 l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l 1142 (1189)
+ +.+.++.+++..+..+++|++|++++| .+..+|... +..+++|+.|++++|+....+
T Consensus 354 L------------s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 354 L------------SYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGI--FDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp C------------CSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSCBCCCT
T ss_pred C------------CCCcccccChhhccccccccEEECCCC-ccccCCHhH--hccCCcccEEEccCCCcccCC
Confidence 5 334455554455666666666666664 344455432 234566666666666444333
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.8e-22 Score=239.05 Aligned_cols=99 Identities=21% Similarity=0.341 Sum_probs=87.1
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
+..+++|++|++++|.++.+|. ++++++|++|++++|.+..+|. ++++++|++|++++| .+..+|. +.++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEE
Confidence 5678899999999999999987 9999999999999999999987 999999999999998 6788876 9999999999
Q ss_pred cccCCcccccCCCCCCCCCCCceeC
Q 048135 600 DITDVHLIKEMPLGMEEWKCLQTLS 624 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~i~~L~~L~~L~ 624 (1189)
++++|. +..+| .++.+++|+.|.
T Consensus 140 ~l~~n~-l~~~~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 140 ELSSNT-ISDIS-ALSGLTSLQQLS 162 (466)
T ss_dssp EEEEEE-ECCCG-GGTTCTTCSEEE
T ss_pred ECCCCc-cCCCh-hhccCCcccEee
Confidence 999987 66665 367777777664
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=3.4e-22 Score=234.05 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=61.8
Q ss_pred CccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCCcccccCCCCCCCCCC
Q 048135 540 PNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDVHLIKEMPLGMEEWKC 619 (1189)
Q Consensus 540 p~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~ 619 (1189)
+..++++++|++|++++|.++.+| .++.+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 456888999999999999999998 6999999999999998 677776 8899999999999887 55443 444444
Q ss_pred Ccee
Q 048135 620 LQTL 623 (1189)
Q Consensus 620 L~~L 623 (1189)
|++|
T Consensus 108 L~~L 111 (457)
T 3bz5_A 108 LTYL 111 (457)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 4433
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=5.6e-22 Score=225.59 Aligned_cols=97 Identities=19% Similarity=0.366 Sum_probs=75.3
Q ss_pred cCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCccc
Q 048135 521 PKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLD 600 (1189)
Q Consensus 521 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 600 (1189)
..+++|++|+++++.+..+|. ++.+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 356778888888888888764 7888888888888888888877 888888888888887 667775 488888888888
Q ss_pred ccCCcccccCCCCCCCCCCCcee
Q 048135 601 ITDVHLIKEMPLGMEEWKCLQTL 623 (1189)
Q Consensus 601 l~~~~~~~~~p~~i~~L~~L~~L 623 (1189)
+++|. +..+|. +..+++|++|
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSL 137 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEE
T ss_pred CcCCc-ccCchh-hccCCceeEE
Confidence 88887 555554 5555555555
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.3e-21 Score=229.76 Aligned_cols=345 Identities=14% Similarity=0.088 Sum_probs=163.3
Q ss_pred CcccEEeecCCCCccCCCCC---CCCCccEEEEeccCCcc----cccCCCCccceEEEecCCCceeecccceeEEEEecc
Q 048135 785 PLLRELSIVKCPKLSGRLPD---HLPSLKKLVISECAQFE----VSFASLPVLSDLSIDGCKGLVCESFQKVEYLKVVRC 857 (1189)
Q Consensus 785 ~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~ 857 (1189)
++|++|++++| .+.+..|. .+++|++|++++|.... ..+..+++|++|++++|...
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~---------------- 92 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---------------- 92 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC----------------
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC----------------
Confidence 56667777666 44433232 35566666666654321 13445555555555555422
Q ss_pred chhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccc---cCCCCCccEEEEecCCCCCCCccccccCCCccceE
Q 048135 858 EELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQE---VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECL 934 (1189)
Q Consensus 858 ~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L 934 (1189)
...|..+..+++|++|++++|......+. ...+++|++|++++|......|..++..+++|++|
T Consensus 93 -------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 93 -------------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp -------------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred -------------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 12344566666666666666643322221 34466666666666543333344444466666666
Q ss_pred EEccCCCccccccc-C--CCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCC
Q 048135 935 LIEGCNSLKFVVKG-Q--LLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPES 1011 (1189)
Q Consensus 935 ~l~~c~~l~~~~~~-~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~ 1011 (1189)
++++|......+.. . ...+|+.|+++++.. ..++..... ....-.+..+++|+.|++++|......|..
T Consensus 160 ~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l-~~~~~~~~~-------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL-QDMNEYWLG-------WEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp ECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBC-TTCSTTCTT-------HHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred eCCCCcccccChhhhhccccccccccccccCcc-cccchhhcc-------ccccccccccceeeeEecCCCcccccchhh
Confidence 66665422221111 0 013556666665432 222110000 000001122345555555555444333332
Q ss_pred CCC---CCccceEeeccCCCCcccCC---------CC----CCCCcCeEEEeccCCCccccccccCCCccccccccCCCC
Q 048135 1012 PIN---LECLHQIYIWDCSSFTSFPK---------GG----LPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTS 1075 (1189)
Q Consensus 1012 ~~~---l~~L~~L~l~~~~~l~~~p~---------~~----~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 1075 (1189)
+.. .++|+.|++++|........ .. ..++|+.|++++|......|..+.++++|++|++
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L----- 306 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL----- 306 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC-----
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEEC-----
Confidence 221 25566666655532221100 00 0135666666665444444555555555555555
Q ss_pred CcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCc
Q 048135 1076 LTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDL 1155 (1189)
Q Consensus 1076 L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~ 1155 (1189)
..+.+..+++..+..+++|++|++++|. +..++... +..+++|+.|++++| .+..++...+..+++|++
T Consensus 307 -------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 307 -------AQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRM--FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp -------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGG--GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred -------CCCcccccChhHhcCcccCCEEECCCCc-cCCcChhH--hcCcccCCEEECCCC-cccccChhhccccccccE
Confidence 3334444444455556666666666542 33332211 234556666666655 334332255555666666
Q ss_pred eeeccCCCCCCCCC--CCCCCCcceeeecCC
Q 048135 1156 LRIRNCPKLTSFPE--VGLPSSLLQLYIDGC 1184 (1189)
Q Consensus 1156 L~l~~c~~l~~lp~--~~~~~sL~~L~i~~c 1184 (1189)
|++++| .++.+|. ...+++|++|++++|
T Consensus 376 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 376 LALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence 666553 4555554 234455666666554
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.7e-21 Score=219.91 Aligned_cols=261 Identities=18% Similarity=0.147 Sum_probs=146.5
Q ss_pred cCCCCCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcce
Q 048135 877 LHGLTSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKK 956 (1189)
Q Consensus 877 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 956 (1189)
+..+++|++|++++| .++.++....+++|++|++++| .+..++. +..+++|+.|++++|..+..++....+++|+.
T Consensus 84 ~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCC-cccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 334444555555444 2333333444455555555543 2333333 22445555555555544444444344445555
Q ss_pred EEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCC
Q 048135 957 LQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGG 1036 (1189)
Q Consensus 957 L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~ 1036 (1189)
|++++|.. ..++ .+..+++|+.|++++|... .++. +..+++|+.|++++| .+..++...
T Consensus 160 L~l~~~~~-~~~~-----------------~~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~ 218 (347)
T 4fmz_A 160 LTVTESKV-KDVT-----------------PIANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVN-QITDITPVA 218 (347)
T ss_dssp EECCSSCC-CCCG-----------------GGGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSS-CCCCCGGGG
T ss_pred EEecCCCc-CCch-----------------hhccCCCCCEEEccCCccc-cccc-ccCCCccceeecccC-CCCCCchhh
Confidence 55555431 1111 0334555555555555432 2322 556777888888777 344444334
Q ss_pred CCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCc
Q 048135 1037 LPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFP 1116 (1189)
Q Consensus 1037 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1116 (1189)
.+++|++|++++| .+..++. +..+++|++|++ ++ +.++.++ .+..+++|++|++++| .+..++
T Consensus 219 ~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l-----------~~-n~l~~~~--~~~~l~~L~~L~l~~n-~l~~~~ 281 (347)
T 4fmz_A 219 NMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEI-----------GT-NQISDIN--AVKDLTKLKMLNVGSN-QISDIS 281 (347)
T ss_dssp GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC-----------CS-SCCCCCG--GGTTCTTCCEEECCSS-CCCCCG
T ss_pred cCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEEC-----------CC-CccCCCh--hHhcCCCcCEEEccCC-ccCCCh
Confidence 4557888888874 4555544 555556655555 33 3444443 3677888888888886 455554
Q ss_pred cccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCCCCCCCcceeeecCCC
Q 048135 1117 QEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEVGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1117 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~ 1185 (1189)
. +..+++|+.|++++|. +...+...+..+++|++|++++|+ +..++....+++|++|++++|+
T Consensus 282 ~----~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 V----LNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp G----GGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred h----hcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 3 2466888888888884 343332567778888888888875 5555555567788888888875
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=8e-21 Score=219.60 Aligned_cols=99 Identities=16% Similarity=0.277 Sum_probs=75.8
Q ss_pred CCcceEEEeccCCCcccCcc-ccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccCc-hhhhccccCCcc
Q 048135 523 FKKLRVLSLKSYHIIELPNS-IGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKWP-SKVMNLINLRHL 599 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L 599 (1189)
+.++++|+++++.+..+|.. +..+++|++|++++|.+..+|. .++++++|++|++++| .+..+| ..++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEE
Confidence 56788888888888888765 5788888888888888888764 6888888888888888 455554 457888888888
Q ss_pred cccCCcccccCCCC-CCCCCCCcee
Q 048135 600 DITDVHLIKEMPLG-MEEWKCLQTL 623 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~-i~~L~~L~~L 623 (1189)
++++|. +..+|.+ ++++++|++|
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEE
Confidence 888886 6667665 3555555555
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=222.93 Aligned_cols=100 Identities=27% Similarity=0.388 Sum_probs=79.1
Q ss_pred CcceEEEeccCCCccc-CccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCchh-hhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 600 (1189)
+++++|+|++|.++.+ |..|.++++|++|+|++|.+..+ |..++++++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 4788999999998887 56788899999999999988877 777889999999999987 57777764 68889999999
Q ss_pred ccCCcccccCCCCCCCCCCCceeC
Q 048135 601 ITDVHLIKEMPLGMEEWKCLQTLS 624 (1189)
Q Consensus 601 l~~~~~~~~~p~~i~~L~~L~~L~ 624 (1189)
+++|......|..+.++++|++|+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCccccCChhHccccccCCEEE
Confidence 988874444455566666666653
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.4e-20 Score=217.48 Aligned_cols=300 Identities=17% Similarity=0.154 Sum_probs=224.5
Q ss_pred CCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCCCcccC-ccccCcccccEEecccccccccc-ccccC
Q 048135 491 VECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSLP-ESTCS 568 (1189)
Q Consensus 491 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~LP-~~i~~ 568 (1189)
+..+|.+....+. ...+++..|..+++|++|++++|.+..+| ..|+.+++|++|+|++|.+..+| ..+++
T Consensus 44 l~~l~~l~l~~~~--------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GCCCSEEEEESCE--------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCceEEEecCCc--------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 4566666554332 12345566788999999999999999886 58999999999999999999885 45899
Q ss_pred CCCCcEEeccCccccccCchhh-hccccCCcccccCCcccccC-CCCCCCCCCCceeCceecccCccccCCCCcchhhhh
Q 048135 569 LINLQTLLLRRCFYLMKWPSKV-MNLINLRHLDITDVHLIKEM-PLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAIL 646 (1189)
Q Consensus 569 L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l 646 (1189)
+++|++|++++| .+..+|..+ +++++|++|++++|. +..+ |..++.+++|++|+..... +... .+
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~--------l~~~---~~ 182 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR--------LTHV---DL 182 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC--------CSBC---CG
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc--------CCcc---cc
Confidence 999999999998 688898875 899999999999998 5555 4568999999999653321 1111 24
Q ss_pred cCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCccc
Q 048135 647 SDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLC 726 (1189)
Q Consensus 647 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~ 726 (1189)
..+++|+.|+++++. +..+..+++|+.|+++++....+|... +++|+.|++++|.. ...+.++.++
T Consensus 183 ~~l~~L~~L~l~~n~---------l~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l-~~~~~l~~l~ 248 (390)
T 3o6n_A 183 SLIPSLFHANVSYNL---------LSTLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNL-TDTAWLLNYP 248 (390)
T ss_dssp GGCTTCSEEECCSSC---------CSEEECCSSCSEEECCSSCCCEEECCC----CSSCCEEECCSSCC-CCCGGGGGCT
T ss_pred ccccccceeeccccc---------ccccCCCCcceEEECCCCeeeeccccc----cccccEEECCCCCC-cccHHHcCCC
Confidence 567888888887542 233455678999999999888877644 57899999999864 3457888999
Q ss_pred CcceEeeccccCceEeCccccCCCCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC--
Q 048135 727 SLKALTIREMTELKIIGSEIYGDGCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD-- 804 (1189)
Q Consensus 727 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~-- 804 (1189)
+|+.|+++++..-...+..+ ..+++|+.|.+.+.. +..+... ...+++|++|++++| .+. .+|.
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~-l~~~~~~-----~~~l~~L~~L~L~~n-~l~-~~~~~~ 314 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNNR-LVALNLY-----GQPIPTLKVLDLSHN-HLL-HVERNQ 314 (390)
T ss_dssp TCSEEECCSSCCCEEESGGG------TTCSSCCEEECCSSC-CCEEECS-----SSCCTTCCEEECCSS-CCC-CCGGGH
T ss_pred CccEEECCCCcCCCcChhHc------cccccCCEEECCCCc-CcccCcc-----cCCCCCCCEEECCCC-cce-ecCccc
Confidence 99999999875444444333 337889999988753 2222211 456889999999998 665 5554
Q ss_pred -CCCCccEEEEeccCCcccccCCCCccceEEEecCC
Q 048135 805 -HLPSLKKLVISECAQFEVSFASLPVLSDLSIDGCK 839 (1189)
Q Consensus 805 -~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~~~ 839 (1189)
.+++|+.|++.+|......+..+++|++|++++|+
T Consensus 315 ~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp HHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred cccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 46788888888887666566677777777777775
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=4.7e-20 Score=225.19 Aligned_cols=301 Identities=16% Similarity=0.149 Sum_probs=171.6
Q ss_pred CCcceEEEeccCCCcccCcc-ccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccCch-hhhccccCCcc
Q 048135 523 FKKLRVLSLKSYHIIELPNS-IGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKWPS-KVMNLINLRHL 599 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L 599 (1189)
+.++++|+++++.+..+|.. ++++++|++|+|++|.+..+|. .|+.+++|++|+|++| .+..+|. .++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEE
Confidence 46788888888888888755 5778888888888888887754 7888888888888887 4555554 46888888888
Q ss_pred cccCCcccccCCCC-CCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCC
Q 048135 600 DITDVHLIKEMPLG-MEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHT 678 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~ 678 (1189)
++++|. +..+|.. ++++++|++|+
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~------------------------------------------------------ 153 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLS------------------------------------------------------ 153 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEE------------------------------------------------------
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEE------------------------------------------------------
Confidence 888886 6666654 35555555442
Q ss_pred CcceEEEeeeCCCCCCC-CCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCccccCCCCCCCCCc
Q 048135 679 SLKELTIKCYGGTRFPS-WVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQS 757 (1189)
Q Consensus 679 ~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~ 757 (1189)
+++|.+..+|. ++. .+++|+.|++++|... .+ +++.+++|+.|+++++. +..++ ..++
T Consensus 154 ------Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~-~~-~~~~l~~L~~L~l~~n~-l~~l~----------~~~~ 212 (597)
T 3oja_B 154 ------MSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLT-HV-DLSLIPSLFHANVSYNL-LSTLA----------IPIA 212 (597)
T ss_dssp ------CCSSCCCBCCTTTTT--TCTTCCEEECTTSCCS-BC-CGGGCTTCSEEECCSSC-CSEEE----------CCTT
T ss_pred ------eeCCcCCCCChhhhh--cCCcCcEEECcCCCCC-Cc-ChhhhhhhhhhhcccCc-ccccc----------CCch
Confidence 22222222211 222 2444444454444321 11 23344445555554331 11110 0122
Q ss_pred cceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCCCCCCccEEEEeccCCcccccCCCCccceEEEec
Q 048135 758 LETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPDHLPSLKKLVISECAQFEVSFASLPVLSDLSIDG 837 (1189)
Q Consensus 758 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~ 837 (1189)
|+.|.+.+... .... ...+++|+.|++++| .+.+ . ..+..+++|+.|++++
T Consensus 213 L~~L~ls~n~l-~~~~-------~~~~~~L~~L~L~~n-~l~~-~-------------------~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 213 VEELDASHNSI-NVVR-------GPVNVELTILKLQHN-NLTD-T-------------------AWLLNYPGLVEVDLSY 263 (597)
T ss_dssp CSEEECCSSCC-CEEE-------CSCCSCCCEEECCSS-CCCC-C-------------------GGGGGCTTCSEEECCS
T ss_pred hheeeccCCcc-cccc-------cccCCCCCEEECCCC-CCCC-C-------------------hhhccCCCCCEEECCC
Confidence 33333322110 0000 111234555555554 2221 0 1344455666666665
Q ss_pred CCCceeecccceeEEEEeccchhhHhhhhhhhhcccccccCCCCCCcEEEeccCCCcccccc-cCCCCCccEEEEecCCC
Q 048135 838 CKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQE-VCFLPILGELEIKNCSA 916 (1189)
Q Consensus 838 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~c~~ 916 (1189)
|... +..|..+..+++|+.|++++|. +..++. ...+++|+.|++++| .
T Consensus 264 N~l~-----------------------------~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 264 NELE-----------------------------KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp SCCC-----------------------------EEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSS-C
T ss_pred CccC-----------------------------CCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCC-C
Confidence 5421 1235567777888888888864 444443 344788888888886 4
Q ss_pred CCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeeccc
Q 048135 917 LKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCE 963 (1189)
Q Consensus 917 l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 963 (1189)
+..+|..+. .+++|+.|++++|. +..++. ..+++|+.|++++++
T Consensus 313 l~~i~~~~~-~l~~L~~L~L~~N~-l~~~~~-~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 313 LLHVERNQP-QFDRLENLYLDHNS-IVTLKL-STHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCGGGHH-HHTTCSEEECCSSC-CCCCCC-CTTCCCSEEECCSSC
T ss_pred CCccCcccc-cCCCCCEEECCCCC-CCCcCh-hhcCCCCEEEeeCCC
Confidence 667777664 67888888888865 344432 335578888888754
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=4e-20 Score=225.74 Aligned_cols=301 Identities=17% Similarity=0.144 Sum_probs=226.0
Q ss_pred CCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCCCcccC-ccccCcccccEEecccccccccccc-ccC
Q 048135 491 VECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSLPES-TCS 568 (1189)
Q Consensus 491 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~LP~~-i~~ 568 (1189)
+..++.+....+. ...+++..|..+++|++|+|++|.+..+| ..|+.+++|++|+|++|.+..+|+. +++
T Consensus 50 l~~l~~l~l~~~~--------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GCCCSEEEESSCE--------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCceEEEeeCCC--------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 4556666544321 12345667888999999999999999885 5899999999999999999988654 799
Q ss_pred CCCCcEEeccCccccccCchhh-hccccCCcccccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhc
Q 048135 569 LINLQTLLLRRCFYLMKWPSKV-MNLINLRHLDITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILS 647 (1189)
Q Consensus 569 L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~ 647 (1189)
+++|++|+|++| .+..+|..+ +++++|++|++++|......|..++.+++|++|+...+. +... .+.
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--------l~~~---~~~ 189 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--------LTHV---DLS 189 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--------CSBC---CGG
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--------CCCc---Chh
Confidence 999999999998 678888774 899999999999998444445569999999999653321 1111 245
Q ss_pred CCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccC
Q 048135 648 DKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCS 727 (1189)
Q Consensus 648 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~ 727 (1189)
.+++|+.|+++++. +..+..+.+|+.|+++++.+..+|..+ .++|+.|++++|... ..+.++.+++
T Consensus 190 ~l~~L~~L~l~~n~---------l~~l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~-~~~~l~~l~~ 255 (597)
T 3oja_B 190 LIPSLFHANVSYNL---------LSTLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLT-DTAWLLNYPG 255 (597)
T ss_dssp GCTTCSEEECCSSC---------CSEEECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCC-CCGGGGGCTT
T ss_pred hhhhhhhhhcccCc---------cccccCCchhheeeccCCccccccccc----CCCCCEEECCCCCCC-CChhhccCCC
Confidence 57788888887542 233456678999999999988877654 478999999998644 4577899999
Q ss_pred cceEeeccccCceEeCccccCCCCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC---
Q 048135 728 LKALTIREMTELKIIGSEIYGDGCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD--- 804 (1189)
Q Consensus 728 L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~--- 804 (1189)
|+.|+++++......+..+ ..+++|+.|.+.++. +..+... ...+|+|+.|++++| .+. .+|.
T Consensus 256 L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~Ls~N~-l~~l~~~-----~~~l~~L~~L~Ls~N-~l~-~i~~~~~ 321 (597)
T 3oja_B 256 LVEVDLSYNELEKIMYHPF------VKMQRLERLYISNNR-LVALNLY-----GQPIPTLKVLDLSHN-HLL-HVERNQP 321 (597)
T ss_dssp CSEEECCSSCCCEEESGGG------TTCSSCCEEECTTSC-CCEEECS-----SSCCTTCCEEECCSS-CCC-CCGGGHH
T ss_pred CCEEECCCCccCCCCHHHh------cCccCCCEEECCCCC-CCCCCcc-----cccCCCCcEEECCCC-CCC-ccCcccc
Confidence 9999999876554444443 337899999988753 2222211 456889999999998 565 5664
Q ss_pred CCCCccEEEEeccCCcccccCCCCccceEEEecCC
Q 048135 805 HLPSLKKLVISECAQFEVSFASLPVLSDLSIDGCK 839 (1189)
Q Consensus 805 ~l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~~~ 839 (1189)
.+++|+.|++++|......+..+++|+.|++++|+
T Consensus 322 ~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp HHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred cCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 36788888888887666566777777777777776
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=4.3e-19 Score=211.21 Aligned_cols=298 Identities=21% Similarity=0.229 Sum_probs=190.0
Q ss_pred CCCCCC-CCccEEEEeccCCccc---ccCCCCccceEEEecCCCceeecccceeEEEEeccchhhHhhhhhhhhcccccc
Q 048135 801 RLPDHL-PSLKKLVISECAQFEV---SFASLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLWQNEIWLEKTPIR 876 (1189)
Q Consensus 801 ~~p~~l-~~L~~L~l~~c~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~~~~~ 876 (1189)
.+|..+ ++++.|+++++..... .+..+++|++|++++|... ...|..
T Consensus 25 ~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-----------------------------~~~~~~ 75 (477)
T 2id5_A 25 AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-----------------------------AVEPGA 75 (477)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-----------------------------EECTTT
T ss_pred cCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-----------------------------EeChhh
Confidence 444432 3556666655543221 3555666666666665421 112445
Q ss_pred cCCCCCCcEEEeccCCCcccccc--cCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc--CCCC
Q 048135 877 LHGLTSPKKLCIENCQRLVSFQE--VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLL 952 (1189)
Q Consensus 877 ~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~ 952 (1189)
+..+++|++|++++|. ++.++. ...+++|++|++++| .+..++...+..+++|++|++++|. +..+... ..++
T Consensus 76 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 152 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLN 152 (477)
T ss_dssp TTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCT
T ss_pred hhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCc-cceeChhhccCCC
Confidence 6666777777777653 444433 234667777777765 3444444444466777777777654 2322221 2345
Q ss_pred CcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCccc
Q 048135 953 PLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSF 1032 (1189)
Q Consensus 953 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~ 1032 (1189)
+|+.|++++|. ++.++. -.+.++++|+.|++++|......+..+..+++|+.|++++|+.+..+
T Consensus 153 ~L~~L~l~~n~-l~~~~~---------------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 153 SLEQLTLEKCN-LTSIPT---------------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp TCCEEEEESCC-CSSCCH---------------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred CCCEEECCCCc-CcccCh---------------hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence 67777777753 333221 12445677777777777766666667888899999999998888877
Q ss_pred CCCCC-CCCcCeEEEeccCCCcccc-ccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccC
Q 048135 1033 PKGGL-PNTLSRISIGKCENLVALP-DRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCL 1110 (1189)
Q Consensus 1033 p~~~~-~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 1110 (1189)
|...+ ..+|++|++++| .++.+| ..+.++++|+.|++ +.+.+..+++..+..+++|++|+|++|.
T Consensus 217 ~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L------------s~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNL------------SYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp CTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEEC------------CSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred CcccccCccccEEECcCC-cccccCHHHhcCccccCeeEC------------CCCcCCccChhhccccccCCEEECCCCc
Confidence 76433 238999999985 566666 45677777777777 4455667777778888889999998864
Q ss_pred CcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCC
Q 048135 1111 DAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPK 1163 (1189)
Q Consensus 1111 ~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 1163 (1189)
.....|.. +..+++|+.|++++| .++.++...+..+++|+.|++++|+.
T Consensus 284 l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 284 LAVVEPYA---FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CSEECTTT---BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred cceECHHH---hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 33333433 356788889999888 67777766778888889998888753
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=7.6e-20 Score=204.71 Aligned_cols=217 Identities=22% Similarity=0.319 Sum_probs=149.4
Q ss_pred CCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccc
Q 048135 522 KFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDI 601 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 601 (1189)
....+++|+|++|.+..+|..++++++|++|+|++|.+..+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 35789999999999999999999999999999999999999999999999999999998 67799999999999999999
Q ss_pred cCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcc
Q 048135 602 TDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLK 681 (1189)
Q Consensus 602 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~ 681 (1189)
++|.....+|..++.... ...+..+++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~---------------------------------------------------~~~~~~l~~L~ 186 (328)
T 4fcg_A 158 RACPELTELPEPLASTDA---------------------------------------------------SGEHQGLVNLQ 186 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------------CCCEEESTTCC
T ss_pred CCCCCccccChhHhhccc---------------------------------------------------hhhhccCCCCC
Confidence 998878888876543110 01122334555
Q ss_pred eEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccccCceEeCccccCCCCCCCCCcccee
Q 048135 682 ELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLETL 761 (1189)
Q Consensus 682 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L 761 (1189)
.|++++|.+..+|.++. .+++|+.|++++|......+.++.+++|+.|++++|.....++..+ ..+++|+.|
T Consensus 187 ~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~------~~l~~L~~L 258 (328)
T 4fcg_A 187 SLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF------GGRAPLKRL 258 (328)
T ss_dssp EEEEEEECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT------TCCCCCCEE
T ss_pred EEECcCCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh------cCCCCCCEE
Confidence 55555555555555544 3556666666665433222245556666666666655544443322 225555555
Q ss_pred eccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC
Q 048135 762 CFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD 804 (1189)
Q Consensus 762 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~ 804 (1189)
.+.++.....+... ...+++|++|++++|+.+. .+|.
T Consensus 259 ~L~~n~~~~~~p~~-----~~~l~~L~~L~L~~n~~~~-~iP~ 295 (328)
T 4fcg_A 259 ILKDCSNLLTLPLD-----IHRLTQLEKLDLRGCVNLS-RLPS 295 (328)
T ss_dssp ECTTCTTCCBCCTT-----GGGCTTCCEEECTTCTTCC-CCCG
T ss_pred ECCCCCchhhcchh-----hhcCCCCCEEeCCCCCchh-hccH
Confidence 55554433332211 4567778888888874443 6665
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1e-17 Score=188.59 Aligned_cols=280 Identities=17% Similarity=0.187 Sum_probs=161.8
Q ss_pred cceEEEeccCCCcccCccccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccC-chhhhccccCCccccc
Q 048135 525 KLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKW-PSKVMNLINLRHLDIT 602 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 602 (1189)
++++++++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++| .+..+ |..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 45666666666666665443 456666666666666544 4566666666666665 33333 5556666666666666
Q ss_pred CCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcce
Q 048135 603 DVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKE 682 (1189)
Q Consensus 603 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~ 682 (1189)
+|. +..+|..+. ++|++|+... ..+.......+.++++|+.|+++.+.-.. .......+..+++|+.
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHE--------NEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLSY 175 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCS--------SCCCBBCHHHHTTCTTCCEEECCSSCCCG--GGBCTTGGGGCTTCCE
T ss_pred CCc-CCccChhhc--ccccEEECCC--------CcccccCHhHhcCCccccEEECCCCcCCc--cCcChhhccCCCCcCE
Confidence 665 555555443 4555554311 11223333445566667776665432110 1112344566788999
Q ss_pred EEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccccCceEeCccccCCCCCCCCCcccee
Q 048135 683 LTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSLETL 761 (1189)
Q Consensus 683 L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L 761 (1189)
|+++++....+|..+ +++|+.|++++|......| .++.+++|+.|+++++. +..++... ...+++|+.|
T Consensus 176 L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----~~~l~~L~~L 245 (330)
T 1xku_A 176 IRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS-----LANTPHLREL 245 (330)
T ss_dssp EECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTT-----GGGSTTCCEE
T ss_pred EECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhh-----ccCCCCCCEE
Confidence 999999888888765 3789999999987544434 57888999999998864 33333211 1236788888
Q ss_pred eccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC-C---------CCCccEEEEeccCCcc-----cccCC
Q 048135 762 CFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD-H---------LPSLKKLVISECAQFE-----VSFAS 826 (1189)
Q Consensus 762 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~-~---------l~~L~~L~l~~c~~~~-----~~~~~ 826 (1189)
++.++.- ..+.. ....+++|++|++++| .++ .+|. . .+.++.|++.+++... ..+..
T Consensus 246 ~L~~N~l-~~lp~-----~l~~l~~L~~L~l~~N-~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 246 HLNNNKL-VKVPG-----GLADHKYIQVVYLHNN-NIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp ECCSSCC-SSCCT-----TTTTCSSCCEEECCSS-CCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred ECCCCcC-ccCCh-----hhccCCCcCEEECCCC-cCC-ccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 8877532 22211 1456788888888887 555 3332 1 2456666666655321 13444
Q ss_pred CCccceEEEecC
Q 048135 827 LPVLSDLSIDGC 838 (1189)
Q Consensus 827 l~~L~~L~l~~~ 838 (1189)
+++++.+++++|
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 555555555544
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=5.2e-18 Score=191.07 Aligned_cols=191 Identities=20% Similarity=0.197 Sum_probs=92.2
Q ss_pred cceEEEeccCCCcccCccccCcccccEEecccccccccc-ccccCCCCCcEEeccCccccccC-chhhhccccCCccccc
Q 048135 525 KLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLP-ESTCSLINLQTLLLRRCFYLMKW-PSKVMNLINLRHLDIT 602 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 602 (1189)
++++++++++.++.+|..+. ++|++|++++|.+..+| ..++++++|++|++++| .+..+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 34555555555555554442 34555555555555442 24555555555555554 23332 4445555555555555
Q ss_pred CCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcce
Q 048135 603 DVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKE 682 (1189)
Q Consensus 603 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~ 682 (1189)
+|. +..+|..+. ++|++|+.... .+.......+.++++|+.|+++++.-.. .......+..+ +|+.
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRIHDN--------RIRKVPKGVFSGLRNMNCIEMGGNPLEN--SGFEPGAFDGL-KLNY 176 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEECCSS--------CCCCCCSGGGSSCSSCCEEECCSCCCBG--GGSCTTSSCSC-CCSC
T ss_pred CCc-CCccCcccc--ccCCEEECCCC--------ccCccCHhHhCCCccCCEEECCCCcccc--CCCCcccccCC-ccCE
Confidence 544 444444433 34444432111 1111111223344444444444321100 00112233333 6777
Q ss_pred EEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccc
Q 048135 683 LTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREM 736 (1189)
Q Consensus 683 L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~ 736 (1189)
|+++++....+|..+ +++|+.|++++|......+ .+..+++|+.|+++++
T Consensus 177 L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 177 LRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp CBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred EECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 777777777777654 3577777777775443332 4667777777777664
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=1.1e-17 Score=188.36 Aligned_cols=265 Identities=16% Similarity=0.123 Sum_probs=180.5
Q ss_pred CCCcEEEeccCCCccccc--ccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEE
Q 048135 881 TSPKKLCIENCQRLVSFQ--EVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQ 958 (1189)
Q Consensus 881 ~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ 958 (1189)
++|+.|++++|. +..++ ....+++|++|++++| .++.++...+..+++|++|++++|. ++.++.... ++|++|+
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~-~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP-SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC-TTCCEEE
T ss_pred CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc-ccCCEEE
Confidence 577777777764 33332 2455777777777776 4555544444467778888877654 445554333 6788888
Q ss_pred eecccCccccccccCCCCCCccchhhhhccccCCCCCcccccccccc--ccCCCCCCCCCccceEeeccCCCCcccCCCC
Q 048135 959 IRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIR--KSMPESPINLECLHQIYIWDCSSFTSFPKGG 1036 (1189)
Q Consensus 959 l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~ 1036 (1189)
++++. ++.++. -.+.++++|+.|++++|... ...|..+..+ +|+.|++++| .++.+|..
T Consensus 130 l~~n~-i~~~~~---------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~- 190 (332)
T 2ft3_A 130 IHDNR-IRKVPK---------------GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKD- 190 (332)
T ss_dssp CCSSC-CCCCCS---------------GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSS-
T ss_pred CCCCc-cCccCH---------------hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcc-
Confidence 87753 333321 12455777888888877664 3556677777 9999999988 47777764
Q ss_pred CCCCcCeEEEeccCCCccc-cccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccC
Q 048135 1037 LPNTLSRISIGKCENLVAL-PDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSF 1115 (1189)
Q Consensus 1037 ~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l 1115 (1189)
++++|++|++++| .++.+ +..+..+++|+.|++ +.+.+..+++..+..+++|++|++++| .+..+
T Consensus 191 ~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L------------~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 256 (332)
T 2ft3_A 191 LPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGL------------GHNQIRMIENGSLSFLPTLRELHLDNN-KLSRV 256 (332)
T ss_dssp SCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBC------------CSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBC
T ss_pred ccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEEC------------CCCcCCcCChhHhhCCCCCCEEECCCC-cCeec
Confidence 4469999999995 45444 467778888888887 456677777667889999999999996 66788
Q ss_pred ccccccCCCCCccceeecccCCCCcccCcCCCCC------CCccCceeeccCCCCC-CCCC--CCCCCCcceeeecCCCC
Q 048135 1116 PQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRN------LTSLDLLRIRNCPKLT-SFPE--VGLPSSLLQLYIDGCPL 1186 (1189)
Q Consensus 1116 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~------l~~L~~L~l~~c~~l~-~lp~--~~~~~sL~~L~i~~c~~ 1186 (1189)
|... ..+++|+.|++++| .++.++...+.. .++|+.|++++|+... .++. ...+++|+.|++++|.+
T Consensus 257 p~~l---~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 257 PAGL---PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp CTTG---GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred Chhh---hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 8765 56799999999998 677776555543 4779999999987441 2332 44578899999998863
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2e-17 Score=198.97 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=69.5
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccC
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITD 603 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 603 (1189)
.++++|+++++.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 368999999999999998886 799999999999999998 6899999999998 6888887 789999999998
Q ss_pred CcccccCCC
Q 048135 604 VHLIKEMPL 612 (1189)
Q Consensus 604 ~~~~~~~p~ 612 (1189)
|. +..+|.
T Consensus 111 N~-l~~l~~ 118 (622)
T 3g06_A 111 NP-LTHLPA 118 (622)
T ss_dssp CC-CCCCCC
T ss_pred Cc-CCCCCC
Confidence 87 666664
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=5.4e-18 Score=189.67 Aligned_cols=228 Identities=21% Similarity=0.261 Sum_probs=134.4
Q ss_pred CCCCcEEEeccCCCcccccc-cCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc-CCCCCcceE
Q 048135 880 LTSPKKLCIENCQRLVSFQE-VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG-QLLLPLKKL 957 (1189)
Q Consensus 880 l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L 957 (1189)
.+.++.|++++|. +..+|. .+.+++|++|++++| .+..+|..+. .+++|++|++++|. ++.+|.. ..+++|+.|
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~-~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQ-QFAGLETLTLARNP-LRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGG-GGTTCSEEEEESCC-CCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCC-CccchhHHHh-ccCCCCEEECCCCc-cccCcHHHhcCcCCCEE
Confidence 4667777777764 334443 445677777777775 3446665554 56667777776653 2233322 224455555
Q ss_pred EeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCC-C
Q 048135 958 QIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKG-G 1036 (1189)
Q Consensus 958 ~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~-~ 1036 (1189)
++++|+.+..+|..... ..++..+..+++|++|++++| .++.+|.. +
T Consensus 156 ~L~~n~~~~~~p~~~~~-------------------------------~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~ 203 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS-------------------------------TDASGEHQGLVNLQSLRLEWT-GIRSLPASIA 203 (328)
T ss_dssp EEEEETTCCCCCSCSEE-------------------------------EC-CCCEEESTTCCEEEEEEE-CCCCCCGGGG
T ss_pred ECCCCCCccccChhHhh-------------------------------ccchhhhccCCCCCEEECcCC-CcCcchHhhc
Confidence 55555544444321100 011223344777777777777 45555542 2
Q ss_pred CCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCc
Q 048135 1037 LPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFP 1116 (1189)
Q Consensus 1037 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1116 (1189)
.+++|++|++++| .+..+|..+.++++|++|++ ++|+....++ ..+..+++|++|+|++|+.++.+|
T Consensus 204 ~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~L-----------s~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 204 NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDL-----------RGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEEC-----------TTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCCCCCEEEccCC-CCCcCchhhccCCCCCEEEC-----------cCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcc
Confidence 3447777777774 45556666666666555555 4444444443 346677777777777777777777
Q ss_pred cccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeecc
Q 048135 1117 QEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRN 1160 (1189)
Q Consensus 1117 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~ 1160 (1189)
... ..+++|+.|++++|+.++.+| .++.++++|+.+++..
T Consensus 271 ~~~---~~l~~L~~L~L~~n~~~~~iP-~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 271 LDI---HRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPP 310 (328)
T ss_dssp TTG---GGCTTCCEEECTTCTTCCCCC-GGGGGSCTTCEEECCG
T ss_pred hhh---hcCCCCCEEeCCCCCchhhcc-HHHhhccCceEEeCCH
Confidence 654 456777777777777777777 6677777777777765
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=3.6e-17 Score=184.05 Aligned_cols=266 Identities=15% Similarity=0.123 Sum_probs=187.7
Q ss_pred CCCcEEEeccCCCcccccc--cCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEE
Q 048135 881 TSPKKLCIENCQRLVSFQE--VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQ 958 (1189)
Q Consensus 881 ~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ 958 (1189)
+.|+.|++++|. ++.++. ...+++|++|++++| .++.++...+..+++|++|++++|. ++.++... .++|+.|+
T Consensus 52 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~-~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM-PKTLQELR 127 (330)
T ss_dssp TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC-CTTCCEEE
T ss_pred CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh-cccccEEE
Confidence 678888888864 444432 455788888888876 4555533334477888888888754 55555433 36788888
Q ss_pred eecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccc--cCCCCCCCCCccceEeeccCCCCcccCCCC
Q 048135 959 IRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRK--SMPESPINLECLHQIYIWDCSSFTSFPKGG 1036 (1189)
Q Consensus 959 l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~ 1036 (1189)
++++. ++.++ .-.+.++++|+.|++++|.... ..+..+..+++|++|++++| .++.+|...
T Consensus 128 l~~n~-l~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~ 190 (330)
T 1xku_A 128 VHENE-ITKVR---------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL 190 (330)
T ss_dssp CCSSC-CCBBC---------------HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC
T ss_pred CCCCc-ccccC---------------HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccc
Confidence 88853 33222 1134567888888888877643 56777888999999999998 577777643
Q ss_pred CCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCc
Q 048135 1037 LPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFP 1116 (1189)
Q Consensus 1037 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1116 (1189)
+++|++|++++|......|..+..+++|++|++ +.+.++.+++..+..+++|++|++++| .+..+|
T Consensus 191 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------------s~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp 256 (330)
T 1xku_A 191 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL------------SFNSISAVDNGSLANTPHLRELHLNNN-KLVKVP 256 (330)
T ss_dssp -CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC------------CSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCC
T ss_pred -cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC------------CCCcCceeChhhccCCCCCCEEECCCC-cCccCC
Confidence 479999999996533334677888888888887 456677777667889999999999997 667888
Q ss_pred cccccCCCCCccceeecccCCCCcccCcCCCCC------CCccCceeeccCCCCC-CCCC--CCCCCCcceeeecCCC
Q 048135 1117 QEELGMMLPTSLTKLAIAKFPELKHLSSKGFRN------LTSLDLLRIRNCPKLT-SFPE--VGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1117 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~------l~~L~~L~l~~c~~l~-~lp~--~~~~~sL~~L~i~~c~ 1185 (1189)
... ..+++|+.|++++| .++.++...+.. .++|+.|++++||.-. .++. ...+.+|+.++++++.
T Consensus 257 ~~l---~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 257 GGL---ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTT---TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhh---ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 765 67799999999998 677777555542 4789999999987432 2332 3456789999998863
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=2.8e-18 Score=190.88 Aligned_cols=109 Identities=18% Similarity=0.318 Sum_probs=78.3
Q ss_pred hhhhcCCCcceEEEecc-CCCc-ccCccccCcccccEEeccccccc-cccccccCCCCCcEEeccCccccccCchhhhcc
Q 048135 517 SDLLPKFKKLRVLSLKS-YHII-ELPNSIGRLMHLRYLDMSNTAIS-SLPESTCSLINLQTLLLRRCFYLMKWPSKVMNL 593 (1189)
Q Consensus 517 ~~~~~~l~~Lr~L~L~~-~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 593 (1189)
+..+..+++|++|++++ |.+. .+|..|+++++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 34566777788888874 6655 56777777888888888887777 667777778888888888774444677777778
Q ss_pred ccCCcccccCCcccccCCCCCCCCC-CCceeCc
Q 048135 594 INLRHLDITDVHLIKEMPLGMEEWK-CLQTLSN 625 (1189)
Q Consensus 594 ~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~ 625 (1189)
++|++|++++|.....+|..+++++ +|++|+.
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 8888888877774446777777766 6666643
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=4.8e-19 Score=217.59 Aligned_cols=208 Identities=12% Similarity=0.103 Sum_probs=116.2
Q ss_pred hhhhhhcCCCcceEEEeccCCCccc-CccccCc--ccccEEeccccc-cc--cccccccCCCCCcEEeccCcccccc---
Q 048135 515 FLSDLLPKFKKLRVLSLKSYHIIEL-PNSIGRL--MHLRYLDMSNTA-IS--SLPESTCSLINLQTLLLRRCFYLMK--- 585 (1189)
Q Consensus 515 ~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l--~~L~~L~L~~~~-i~--~LP~~i~~L~~L~~L~L~~~~~l~~--- 585 (1189)
.+......+++|++|+|++|.+... +..+... .+|++|+|++|. +. .++..+.++++|++|+|++|.....
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH
T ss_pred HHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh
Confidence 3444556788899999998876643 4445443 349999998875 22 3444456788999999998843222
Q ss_pred -CchhhhccccCCcccccCCccc----ccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeec
Q 048135 586 -WPSKVMNLINLRHLDITDVHLI----KEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECR 660 (1189)
Q Consensus 586 -lp~~i~~L~~L~~L~l~~~~~~----~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 660 (1189)
++.....+++|++|++++|... ..++..+.++++|++|+...+. ... ....+..+++|+.|+++..
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--------~~~-l~~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE--------ILE-LVGFFKAAANLEEFCGGSL 253 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB--------GGG-GHHHHHHCTTCCEEEECBC
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc--------HHH-HHHHHhhhhHHHhhccccc
Confidence 4444567888999999887622 2333334556667766432211 111 2234555666666666531
Q ss_pred CCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCC-CCC-CCCcccCcceEeec
Q 048135 661 YPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCR-SLP-SLGLLCSLKALTIR 734 (1189)
Q Consensus 661 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~-~lp-~l~~l~~L~~L~L~ 734 (1189)
... .........+..+++|+.|.+.......+|..+. .+++|++|++++|.... .++ .++.+++|+.|++.
T Consensus 254 ~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 254 NED-IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCC-TTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGG--GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccc-cchHHHHHHhhccccccccCccccchhHHHHHHh--hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 100 0011222344555566666665544444554443 35566666666665211 111 13555666666665
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=6.1e-19 Score=216.63 Aligned_cols=255 Identities=15% Similarity=0.158 Sum_probs=144.4
Q ss_pred hhhhhcCCCcceEEEeccCCC----cccCcccc------------CcccccEEecccccccc-ccccccCC--CCCcEEe
Q 048135 516 LSDLLPKFKKLRVLSLKSYHI----IELPNSIG------------RLMHLRYLDMSNTAISS-LPESTCSL--INLQTLL 576 (1189)
Q Consensus 516 ~~~~~~~l~~Lr~L~L~~~~~----~~lp~~i~------------~l~~L~~L~L~~~~i~~-LP~~i~~L--~~L~~L~ 576 (1189)
++..+..+++|+.|+++++.. ..+|..++ .+++|++|+|+++.+.. .+..+..+ .+|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 345667788899999988652 22343333 78999999999998764 35556554 4599999
Q ss_pred ccCccccc--cCchhhhccccCCcccccCCccccc----CCCCCCCCCCCceeCceecccCccccCCCC-cchhhhhcCC
Q 048135 577 LRRCFYLM--KWPSKVMNLINLRHLDITDVHLIKE----MPLGMEEWKCLQTLSNFIVSEGLENATDLQ-DPTKAILSDK 649 (1189)
Q Consensus 577 L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~----~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~-~~~~~~l~~~ 649 (1189)
+++|..+. .++..+.++++|++|++++|..... ++.....+++|++|+..... +.... ......+..+
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-----~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-----FAKISPKDLETIARNC 219 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-----CSSCCHHHHHHHHHHC
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-----CCccCHHHHHHHHhhC
Confidence 99986332 2334446889999999999963211 22223456677777442111 11111 2233445567
Q ss_pred CCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCC----CCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCc
Q 048135 650 NDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGT----RFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGL 724 (1189)
Q Consensus 650 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~ 724 (1189)
++|+.|+++.+. .......+..+++|++|.++++... ..+..+. .+++|+.|.++++. ...+| .+..
T Consensus 220 ~~L~~L~L~~~~-----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~-~~~l~~~~~~ 291 (592)
T 3ogk_B 220 RSLVSVKVGDFE-----ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV--FPRKLCRLGLSYMG-PNEMPILFPF 291 (592)
T ss_dssp TTCCEEECSSCB-----GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC--CCTTCCEEEETTCC-TTTGGGGGGG
T ss_pred CCCcEEeccCcc-----HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh--ccccccccCccccc-hhHHHHHHhh
Confidence 888888887532 1112234455678888888754322 1122222 46677777777642 33344 3556
Q ss_pred ccCcceEeeccccCceEeCc-cccCCCCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecC
Q 048135 725 LCSLKALTIREMTELKIIGS-EIYGDGCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVK 794 (1189)
Q Consensus 725 l~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 794 (1189)
+++|+.|++++|. +..... ... ..+++|+.|.+.+.-...... .....+++|++|++.+
T Consensus 292 ~~~L~~L~Ls~~~-l~~~~~~~~~-----~~~~~L~~L~L~~~~~~~~l~-----~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 292 AAQIRKLDLLYAL-LETEDHCTLI-----QKCPNLEVLETRNVIGDRGLE-----VLAQYCKQLKRLRIER 351 (592)
T ss_dssp GGGCCEEEETTCC-CCHHHHHHHH-----TTCTTCCEEEEEGGGHHHHHH-----HHHHHCTTCCEEEEEC
T ss_pred cCCCcEEecCCCc-CCHHHHHHHH-----HhCcCCCEEeccCccCHHHHH-----HHHHhCCCCCEEEeec
Confidence 7778888887765 221110 001 236677777665221110000 0023456677777764
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=7.2e-18 Score=187.51 Aligned_cols=248 Identities=15% Similarity=0.079 Sum_probs=125.6
Q ss_pred CCCcEEEeccCCCcc--cccc-cCCCCCccEEEEec-CCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcce
Q 048135 881 TSPKKLCIENCQRLV--SFQE-VCFLPILGELEIKN-CSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKK 956 (1189)
Q Consensus 881 ~~L~~L~l~~~~~l~--~~~~-~~~l~~L~~L~l~~-c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 956 (1189)
.+++.|++++|.... .+|. ...+++|++|++++ +.....+|..+. .+++|++|++++|.....++..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~-------- 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDF-------- 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGG--------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHH--------
Confidence 456666666654333 2322 34456666666664 322234444433 4555555555554432222221
Q ss_pred EEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCC-
Q 048135 957 LQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKG- 1035 (1189)
Q Consensus 957 L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~- 1035 (1189)
+..+++|+.|++++|...+.+|..+..+++|++|++++|.....+|..
T Consensus 121 -------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 169 (313)
T 1ogq_A 121 -------------------------------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169 (313)
T ss_dssp -------------------------------GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred -------------------------------HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH
Confidence 223444555555555444455555556666666666665432234331
Q ss_pred -CCCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCccc
Q 048135 1036 -GLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVS 1114 (1189)
Q Consensus 1036 -~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1114 (1189)
.+.++|++|++++|.....+|..+..++ |++|++ ..+.+....+..+..+++|+.|++++|.....
T Consensus 170 ~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L------------s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL------------SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC------------CSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC------------cCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 2222566666666443335555555543 444444 23334433444556666666666666533323
Q ss_pred CccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCCCCCCCcceeeecCCCC
Q 048135 1115 FPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEVGLPSSLLQLYIDGCPL 1186 (1189)
Q Consensus 1115 l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~ 1186 (1189)
+|. . ..+++|++|++++|...+.+| ..+..+++|+.|++++|+.-..+|..+.+++|+.|+++++|.
T Consensus 237 ~~~-~---~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 237 LGK-V---GLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp GGG-C---CCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred cCc-c---cccCCCCEEECcCCcccCcCC-hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 332 1 345666666666664433555 556666666666666654444555555555666666666553
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=3.2e-16 Score=188.62 Aligned_cols=130 Identities=24% Similarity=0.157 Sum_probs=67.5
Q ss_pred cccEEeecCCCCccCCCCCC-CCCccEEEEeccCCcccccCCCCccceEEEecCCCceeecccceeEEEEeccchhhHhh
Q 048135 786 LLRELSIVKCPKLSGRLPDH-LPSLKKLVISECAQFEVSFASLPVLSDLSIDGCKGLVCESFQKVEYLKVVRCEELIYLW 864 (1189)
Q Consensus 786 ~L~~L~l~~c~~L~~~~p~~-l~~L~~L~l~~c~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 864 (1189)
+++.|+++++ .++ .+|.. .++|+.|++++|.... ....+++|++|++++|.
T Consensus 41 ~l~~L~ls~n-~L~-~lp~~l~~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~------------------------- 92 (622)
T 3g06_A 41 GNAVLNVGES-GLT-TLPDCLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQ------------------------- 92 (622)
T ss_dssp CCCEEECCSS-CCS-CCCSCCCTTCSEEEECSCCCSC-CCCCCTTCCEEEECSCC-------------------------
T ss_pred CCcEEEecCC-CcC-ccChhhCCCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCc-------------------------
Confidence 4677777776 555 56653 3466666666664321 11133444444444443
Q ss_pred hhhhhhcccccccCCCCCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccc
Q 048135 865 QNEIWLEKTPIRLHGLTSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKF 944 (1189)
Q Consensus 865 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~ 944 (1189)
+..+|. .+++|++|++++| .++.++. .+++|+.|++++| .++.+|.. +++|++|++++|. ++.
T Consensus 93 -----l~~lp~---~l~~L~~L~Ls~N-~l~~l~~--~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~-l~~ 155 (622)
T 3g06_A 93 -----LTSLPV---LPPGLLELSIFSN-PLTHLPA--LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQ-LAS 155 (622)
T ss_dssp -----CSCCCC---CCTTCCEEEECSC-CCCCCCC--CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSC-CSC
T ss_pred -----CCcCCC---CCCCCCEEECcCC-cCCCCCC--CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCc-CCC
Confidence 122332 4466666666665 3444443 4566666666664 45555542 3566666666552 333
Q ss_pred ccccCCCCCcceEEeecc
Q 048135 945 VVKGQLLLPLKKLQIRKC 962 (1189)
Q Consensus 945 ~~~~~~~~~L~~L~l~~c 962 (1189)
++. .+.+|+.|++++|
T Consensus 156 l~~--~~~~L~~L~L~~N 171 (622)
T 3g06_A 156 LPA--LPSELCKLWAYNN 171 (622)
T ss_dssp CCC--CCTTCCEEECCSS
T ss_pred cCC--ccCCCCEEECCCC
Confidence 332 3445666666553
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=181.34 Aligned_cols=80 Identities=25% Similarity=0.336 Sum_probs=38.9
Q ss_pred cceEEEeccCCCcccCc-cccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCchh-hhccccCCcccc
Q 048135 525 KLRVLSLKSYHIIELPN-SIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLDI 601 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 601 (1189)
+|++|++++|.++.+|. .|.++++|++|++++|.++.+ |..++++++|++|++++| .+..+|.. ++++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEEC
Confidence 45555555555554433 445555555555555555544 233455555555555554 34444433 444555555555
Q ss_pred cCCc
Q 048135 602 TDVH 605 (1189)
Q Consensus 602 ~~~~ 605 (1189)
++|.
T Consensus 132 ~~n~ 135 (353)
T 2z80_A 132 LGNP 135 (353)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 5443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=2.4e-15 Score=176.39 Aligned_cols=229 Identities=18% Similarity=0.248 Sum_probs=106.3
Q ss_pred cccccccCCCCCCcEEEeccCCCccccc--ccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc
Q 048135 871 EKTPIRLHGLTSPKKLCIENCQRLVSFQ--EVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG 948 (1189)
Q Consensus 871 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~ 948 (1189)
..+|..+. ++++.|++++|. +..++ ....+++|++|++++| .++.++...+..+++|++|++++| .++.++..
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 130 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNG 130 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTT
T ss_pred CcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHh
Confidence 34444332 456666666653 33332 2334566666666664 345555444445666666666654 23333332
Q ss_pred --CCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccC
Q 048135 949 --QLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDC 1026 (1189)
Q Consensus 949 --~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 1026 (1189)
..+++|+.|+++++ ......+..+..+++|++|++++|
T Consensus 131 ~~~~l~~L~~L~L~~N----------------------------------------~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNN----------------------------------------PIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp TSCSCSSCCEEECCSC----------------------------------------CCCEECTTTTTTCTTCCEEECCCC
T ss_pred HhhccccCceeeCCCC----------------------------------------cccccCHHHhhhCcccCEeCCCCC
Confidence 22445555555553 322222233444555555555554
Q ss_pred CCCcccCCCCC--CCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceE
Q 048135 1027 SSFTSFPKGGL--PNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNL 1104 (1189)
Q Consensus 1027 ~~l~~~p~~~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L 1104 (1189)
..+..++...+ +++|++|++++| .++.+|. +..+++|++|++ + .|.++.+++..+..+++|+.|
T Consensus 171 ~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L-----------s-~N~l~~~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 171 KRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-LTPLIKLDELDL-----------S-GNHLSAIRPGSFQGLMHLQKL 236 (440)
T ss_dssp TTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC-CTTCSSCCEEEC-----------T-TSCCCEECTTTTTTCTTCCEE
T ss_pred CCcceeCcchhhcccccCeecCCCC-cCccccc-cCCCcccCEEEC-----------C-CCccCccChhhhccCccCCEE
Confidence 44444443221 235555555552 3334431 333333333333 2 233444444445555555555
Q ss_pred EEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCC
Q 048135 1105 SIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCP 1162 (1189)
Q Consensus 1105 ~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 1162 (1189)
++++| .+..++... +..+++|+.|+|++| .++.+|...+..+++|+.|++++||
T Consensus 237 ~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 237 WMIQS-QIQVIERNA--FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTC-CCCEECTTS--STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCC-ceeEEChhh--hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 55553 233332211 234455555555555 4444444445555555555555543
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1.2e-15 Score=162.47 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=98.9
Q ss_pred CCccceEeeccCCCCcccCCCC--CCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccc
Q 048135 1015 LECLHQIYIWDCSSFTSFPKGG--LPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIE 1092 (1189)
Q Consensus 1015 l~~L~~L~l~~~~~l~~~p~~~--~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~ 1092 (1189)
+++|++|++++|..++.++... ..++|++|++++| .++.+|. +..+++|+. |+.|++++++.++.+++
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~--------L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDI--------FFILEITDNPYMTSIPV 148 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCS--------EEEEEEESCTTCCEECT
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-ccccccccc--------ccEEECCCCcchhhcCc
Confidence 4444455554423344444322 2235555555553 3444543 444444441 12333455446666666
Q ss_pred cCCCCCCccc-eEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCC-CccCceeeccCCCCCCCCCC
Q 048135 1093 WGLHKLTALR-NLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNL-TSLDLLRIRNCPKLTSFPEV 1170 (1189)
Q Consensus 1093 ~~l~~l~~L~-~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l-~~L~~L~l~~c~~l~~lp~~ 1170 (1189)
..+..+++|+ +|++++| .+..+|... + ..++|+.|++++|+.++.+|...+..+ ++|+.|++++ +.++.+|..
T Consensus 149 ~~~~~l~~L~~~L~l~~n-~l~~i~~~~--~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~ 223 (239)
T 2xwt_C 149 NAFQGLCNETLTLKLYNN-GFTSVQGYA--F-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK 223 (239)
T ss_dssp TTTTTTBSSEEEEECCSC-CCCEECTTT--T-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT
T ss_pred ccccchhcceeEEEcCCC-CCcccCHhh--c-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh
Confidence 6678888888 8888885 456777654 2 337899999988876888876778888 9999999998 467888865
Q ss_pred CCCCCcceeeecCCCCC
Q 048135 1171 GLPSSLLQLYIDGCPLL 1187 (1189)
Q Consensus 1171 ~~~~sL~~L~i~~c~~L 1187 (1189)
.+++|+.|++++++.|
T Consensus 224 -~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 224 -GLEHLKELIARNTWTL 239 (239)
T ss_dssp -TCTTCSEEECTTC---
T ss_pred -HhccCceeeccCccCC
Confidence 5678999999998865
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.7e-18 Score=212.93 Aligned_cols=88 Identities=19% Similarity=0.348 Sum_probs=57.3
Q ss_pred hhhcCCCcceEEEeccCC-Cccc---Ccc------------ccCcccccEEecccccccc-cccccc-CCCCCcEEeccC
Q 048135 518 DLLPKFKKLRVLSLKSYH-IIEL---PNS------------IGRLMHLRYLDMSNTAISS-LPESTC-SLINLQTLLLRR 579 (1189)
Q Consensus 518 ~~~~~l~~Lr~L~L~~~~-~~~l---p~~------------i~~l~~L~~L~L~~~~i~~-LP~~i~-~L~~L~~L~L~~ 579 (1189)
..+.++++|+.|+++++. +..+ |.. ...+++|++|+|+++.+.. .+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 345566778888888765 2111 211 2356788888888877663 244454 578888888888
Q ss_pred cccccc--CchhhhccccCCcccccCCc
Q 048135 580 CFYLMK--WPSKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 580 ~~~l~~--lp~~i~~L~~L~~L~l~~~~ 605 (1189)
|..+.. ++..+.++++|++|++++|.
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 755544 55545678888888888776
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=5.4e-16 Score=172.43 Aligned_cols=99 Identities=24% Similarity=0.297 Sum_probs=73.5
Q ss_pred CcceEEEeccCCCcccCcc-ccCcccccEEeccccccccc---cccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 524 KKLRVLSLKSYHIIELPNS-IGRLMHLRYLDMSNTAISSL---PESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~L---P~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
++|++|++++|.++.+|.. |.++++|++|++++|.+..+ |..+..+++|++|++++| .+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 4688888888888888754 57888888888888877755 566777888888888887 567777778888888888
Q ss_pred cccCCcccccCCC--CCCCCCCCceeC
Q 048135 600 DITDVHLIKEMPL--GMEEWKCLQTLS 624 (1189)
Q Consensus 600 ~l~~~~~~~~~p~--~i~~L~~L~~L~ 624 (1189)
++++|. +..+|. .+..+++|++|+
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEEE
T ss_pred ECCCCc-ccccccchhhhhccCCCEEE
Confidence 888876 555543 455666666553
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=3e-15 Score=176.19 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=41.2
Q ss_pred CCCcEEEeccCCCccccc-ccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc--CCCCCcceE
Q 048135 881 TSPKKLCIENCQRLVSFQ-EVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLLPLKKL 957 (1189)
Q Consensus 881 ~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L 957 (1189)
++++.|++++|......+ ....+++|+.|++++| .++.++...+..+++|++|++++|. ++.++.. ..+++|+.|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEE
Confidence 456666666653222212 1344666666666664 4455554444456666666666543 3333332 224455566
Q ss_pred Eeecc
Q 048135 958 QIRKC 962 (1189)
Q Consensus 958 ~l~~c 962 (1189)
+++++
T Consensus 153 ~L~~N 157 (452)
T 3zyi_A 153 WLRNN 157 (452)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 55553
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=1.4e-15 Score=179.17 Aligned_cols=218 Identities=23% Similarity=0.264 Sum_probs=136.6
Q ss_pred CcceEEEeccCCCccc-CccccCcccccEEecccccccccc-ccccCCCCCcEEeccCccccccCchh-hhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNTAISSLP-ESTCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 600 (1189)
++|++|+|++|.++.+ |..|+++++|++|+|++|.|..++ ..+.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 5789999999998887 577899999999999999988875 66888999999999998 57777655 78899999999
Q ss_pred ccCCcccccCCC-CCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 601 ITDVHLIKEMPL-GMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 601 l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
+++|. +..+|. .+.++++|+.|+... ...+..+ ....+..+++
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L~l~~---------------------~~~l~~i--------------~~~~~~~l~~ 197 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRLDLGE---------------------LKKLEYI--------------SEGAFEGLFN 197 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECCC---------------------CTTCCEE--------------CTTTTTTCTT
T ss_pred CCCCC-cceeCHhHHhcCCcccEEeCCC---------------------CCCcccc--------------ChhhccCCCC
Confidence 99887 556654 467777777764311 1111111 0112334455
Q ss_pred cceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccccCceEeCccccCCCCCCCCCcc
Q 048135 680 LKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREMTELKIIGSEIYGDGCSKPFQSL 758 (1189)
Q Consensus 680 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L 758 (1189)
|+.|+++++.+..+|... .+++|+.|++++|......| .+..+++|+.|+++++.. ..+...
T Consensus 198 L~~L~L~~n~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~------------- 260 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERN------------- 260 (452)
T ss_dssp CCEEECTTSCCSSCCCCT---TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-CEECTT-------------
T ss_pred CCEEECCCCccccccccc---ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC-ceECHH-------------
Confidence 555565555555555322 35556666666554333323 355555556665554322 111111
Q ss_pred ceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC----CCCCccEEEEeccC
Q 048135 759 ETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD----HLPSLKKLVISECA 818 (1189)
Q Consensus 759 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~----~l~~L~~L~l~~c~ 818 (1189)
.+..+++|++|++++| +++ .+|. .+++|+.|++.+++
T Consensus 261 ---------------------~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 ---------------------AFDGLASLVELNLAHN-NLS-SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ---------------------TTTTCTTCCEEECCSS-CCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred ---------------------HhcCCCCCCEEECCCC-cCC-ccChHHhccccCCCEEEccCCC
Confidence 0344566777777766 555 3332 35677777777654
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1.1e-15 Score=162.98 Aligned_cols=210 Identities=13% Similarity=0.141 Sum_probs=161.8
Q ss_pred CCCCCCCccccccCCCccceEEEccCCCccccccc--CCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccC
Q 048135 914 CSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYG 991 (1189)
Q Consensus 914 c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~ 991 (1189)
|..++.+|. +. ++|++|+++++. ++.++.. ..+++|+.|+++++..++.++.. .+.++
T Consensus 20 c~~l~~ip~-~~---~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~---------------~f~~l 79 (239)
T 2xwt_C 20 CKDIQRIPS-LP---PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESH---------------SFYNL 79 (239)
T ss_dssp ECSCSSCCC-CC---TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTT---------------TEESC
T ss_pred ccCccccCC-CC---CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHh---------------HcCCC
Confidence 566888887 43 489999999865 6666553 34789999999998657665432 34678
Q ss_pred CCCCccccccccccccCC-CCCCCCCccceEeeccCCCCcccCCCCCCCCcC---eEEEeccCCCccccc-cccCCCccc
Q 048135 992 RSLGENMTWKFEIRKSMP-ESPINLECLHQIYIWDCSSFTSFPKGGLPNTLS---RISIGKCENLVALPD-RMHNLSSLQ 1066 (1189)
Q Consensus 992 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~---~L~l~~c~~l~~lp~-~~~~l~~L~ 1066 (1189)
++|+.|++++|+.++.+| ..+..+++|++|++++|. ++.+|.....++|+ +|++++|+.++.+|. .+.++++|+
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 899999999866666665 567889999999999984 67788755566787 999999768888875 477788888
Q ss_pred -cccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCC-CccceeecccCCCCcccCc
Q 048135 1067 -ELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLP-TSLTKLAIAKFPELKHLSS 1144 (1189)
Q Consensus 1067 -~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~ 1144 (1189)
+|++ +.+.++.++...+.. ++|++|++++|..+..+|... +..+ ++|+.|++++| .++.+|.
T Consensus 159 ~~L~l------------~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~--~~~l~~~L~~L~l~~N-~l~~l~~ 222 (239)
T 2xwt_C 159 LTLKL------------YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDA--FGGVYSGPSLLDVSQT-SVTALPS 222 (239)
T ss_dssp EEEEC------------CSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTT--TTTCSBCCSEEECTTC-CCCCCCC
T ss_pred eEEEc------------CCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHH--hhccccCCcEEECCCC-ccccCCh
Confidence 7777 455677777766666 899999999987788887653 3567 89999999998 6788883
Q ss_pred CCCCCCCccCceeeccCCC
Q 048135 1145 KGFRNLTSLDLLRIRNCPK 1163 (1189)
Q Consensus 1145 ~~l~~l~~L~~L~l~~c~~ 1163 (1189)
. .+++|+.|+++++..
T Consensus 223 ~---~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 223 K---GLEHLKELIARNTWT 238 (239)
T ss_dssp T---TCTTCSEEECTTC--
T ss_pred h---HhccCceeeccCccC
Confidence 3 688999999998764
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=4.5e-17 Score=181.68 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=51.2
Q ss_pred hhhhhcCCCcceEEEeccCCCcccC-ccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccc
Q 048135 516 LSDLLPKFKKLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLI 594 (1189)
Q Consensus 516 ~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 594 (1189)
+...+..+++|++|++++|.++.++ ..|+++++|++|+|++|.+..+++ +..+++|++|++++| .+..+| ..+
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~ 99 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGP 99 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECT
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CCC
Confidence 3344555566666666666666654 456666666666666666665554 666666666666666 444443 235
Q ss_pred cCCcccccCCc
Q 048135 595 NLRHLDITDVH 605 (1189)
Q Consensus 595 ~L~~L~l~~~~ 605 (1189)
+|++|++++|.
T Consensus 100 ~L~~L~l~~n~ 110 (317)
T 3o53_A 100 SIETLHAANNN 110 (317)
T ss_dssp TCCEEECCSSC
T ss_pred CcCEEECCCCc
Confidence 66666666554
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=1.2e-15 Score=169.73 Aligned_cols=241 Identities=15% Similarity=0.078 Sum_probs=156.5
Q ss_pred EEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccc---c-ccCCCCCcceEEee
Q 048135 885 KLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFV---V-KGQLLLPLKKLQIR 960 (1189)
Q Consensus 885 ~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~---~-~~~~~~~L~~L~l~ 960 (1189)
.++.+++ .++.+|. ..+++|++|++++| .++.+|...+..+++|++|++++|.. +.. + ....+++|+.|+++
T Consensus 11 ~l~c~~~-~l~~ip~-~~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSK-GLTSVPT-GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSS-CCSSCCS-CCCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCC-CcccCCC-CCCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECC
Confidence 3444442 3455543 33567778888775 46677777666778888888877642 222 1 11235678888888
Q ss_pred cccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCC-CCCCCCCccceEeeccCCCCcccCCC--CC
Q 048135 961 KCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMP-ESPINLECLHQIYIWDCSSFTSFPKG--GL 1037 (1189)
Q Consensus 961 ~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~--~~ 1037 (1189)
++. +..++. .+..+++|+.|++++|......+ ..+..+++|++|++++|. +...+.. ..
T Consensus 87 ~n~-i~~l~~----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 148 (306)
T 2z66_A 87 FNG-VITMSS----------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNG 148 (306)
T ss_dssp SCS-EEEEEE----------------EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTT
T ss_pred CCc-cccChh----------------hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhccc
Confidence 753 333332 13456777778887776554433 467888899999998885 4443332 23
Q ss_pred CCCcCeEEEeccCCCc-cccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCc
Q 048135 1038 PNTLSRISIGKCENLV-ALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFP 1116 (1189)
Q Consensus 1038 ~~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1116 (1189)
.++|++|++++|.... .+|..+..+++|++|++ +.+.++.+++..+..+++|++|++++|. +..++
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L------------s~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 215 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL------------SQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLD 215 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC------------TTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCC
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEEC------------CCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccC
Confidence 4588999998864333 36777777777777777 4456666666678888889999998864 55554
Q ss_pred cccccCCCCCccceeecccCCCCcccCcCCCCCCC-ccCceeeccCCC
Q 048135 1117 QEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLT-SLDLLRIRNCPK 1163 (1189)
Q Consensus 1117 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~-~L~~L~l~~c~~ 1163 (1189)
... +..+++|+.|++++|......| ..+..++ +|+.|++++|+.
T Consensus 216 ~~~--~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 216 TFP--YKCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SGG--GTTCTTCCEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCCE
T ss_pred hhh--ccCcccCCEeECCCCCCcccCH-HHHHhhhccCCEEEccCCCe
Confidence 322 3567888888888885444444 6777774 888888888754
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=1.1e-18 Score=214.55 Aligned_cols=36 Identities=11% Similarity=-0.004 Sum_probs=18.7
Q ss_pred CCCccEEEEecCCCCCC-CccccccCCCccceEEEccC
Q 048135 903 LPILGELEIKNCSALKF-LPEGMKHNNVCLECLLIEGC 939 (1189)
Q Consensus 903 l~~L~~L~l~~c~~l~~-lp~~~~~~~~~L~~L~l~~c 939 (1189)
+++|++|++++|. +.. ....+...+++|++|++++|
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 4566666666665 322 11222235566666666665
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=6.5e-15 Score=172.64 Aligned_cols=241 Identities=16% Similarity=0.198 Sum_probs=165.9
Q ss_pred CcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeecc
Q 048135 883 PKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKC 962 (1189)
Q Consensus 883 L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c 962 (1189)
...++.++ ..++.+|. ..+++++.|++++| .++.++...+..+++|++|++++|. +..++..
T Consensus 45 ~~~v~c~~-~~l~~iP~-~~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~-------------- 106 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPD-GISTNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIG-------------- 106 (440)
T ss_dssp SCEEECCS-CCCSSCCS-CCCTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSC-CCEECGG--------------
T ss_pred CCEEEeCC-CCcCcCCC-CCCCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCc-CCccChh--------------
Confidence 33444443 23445543 23456666666664 4555554444456666666666543 2222211
Q ss_pred cCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCC--CCCC
Q 048135 963 EKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGG--LPNT 1040 (1189)
Q Consensus 963 ~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~--~~~~ 1040 (1189)
.+.++++|+.|++++|.....-+..+..+++|++|++++| .++.++... ..++
T Consensus 107 ------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 107 ------------------------AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPS 161 (440)
T ss_dssp ------------------------GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTT
T ss_pred ------------------------hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcc
Confidence 2233455555555555433333446888999999999998 477777643 3569
Q ss_pred cCeEEEeccCCCccccc-cccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCcccc
Q 048135 1041 LSRISIGKCENLVALPD-RMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEE 1119 (1189)
Q Consensus 1041 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 1119 (1189)
|++|++++|+.+..++. .+.++++|++|++ ..+.++.++ .+..+++|++|+|++| .+..++...
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L------------~~n~l~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~ 226 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNL------------AMCNLREIP--NLTPLIKLDELDLSGN-HLSAIRPGS 226 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEEC------------TTSCCSSCC--CCTTCSSCCEEECTTS-CCCEECTTT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecC------------CCCcCcccc--ccCCCcccCEEECCCC-ccCccChhh
Confidence 99999999999988875 5777888888877 345566665 4789999999999997 455554322
Q ss_pred ccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCC--CCCCCCcceeeecCCC
Q 048135 1120 LGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPE--VGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1120 ~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~~sL~~L~i~~c~ 1185 (1189)
+..+++|+.|++++| .+..++...+.++++|+.|++++| .+..+|. ...+++|+.|+++++|
T Consensus 227 --~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 227 --FQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --TTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --hccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 367899999999999 677776588999999999999995 7888886 3457899999999986
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=174.90 Aligned_cols=250 Identities=16% Similarity=0.077 Sum_probs=121.9
Q ss_pred CCCcEEEeccCCCcccccc--cCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc--CCCCCcce
Q 048135 881 TSPKKLCIENCQRLVSFQE--VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLLPLKK 956 (1189)
Q Consensus 881 ~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~ 956 (1189)
++|++|++++|. ++.++. ...+++|++|++++| .++.++...+..+++|++|++++|. ++.++.. ..+++|+.
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence 355666665543 333322 334555666666554 3444443333355555555555543 2222221 22345555
Q ss_pred EEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccC-CCCCCCCCccceEeeccCCCCcccCCC
Q 048135 957 LQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSM-PESPINLECLHQIYIWDCSSFTSFPKG 1035 (1189)
Q Consensus 957 L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~ 1035 (1189)
|+++++ .++.++.. -.+.++++|+.|++++|...+.+ +..+..+++|++|++++|. ++.++..
T Consensus 129 L~L~~n-~l~~l~~~--------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 192 (353)
T 2z80_A 129 LNLLGN-PYKTLGET--------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPK 192 (353)
T ss_dssp EECTTC-CCSSSCSS--------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT
T ss_pred EECCCC-CCcccCch--------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHH
Confidence 555553 22222210 01223444444444444333333 3455666677777776663 3333221
Q ss_pred --CCCCCcCeEEEeccCCCccccccc-cCCCccccccccCCCCCcceeeccCCCcccccccC---CCCCCccceEEEccc
Q 048135 1036 --GLPNTLSRISIGKCENLVALPDRM-HNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWG---LHKLTALRNLSIGGC 1109 (1189)
Q Consensus 1036 --~~~~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~---l~~l~~L~~L~l~~c 1109 (1189)
...++|++|++++| .++.+|..+ ..+++|+.|++ ++ +.++.++... ....+.++.++++++
T Consensus 193 ~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L-----------~~-n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 193 SLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLEL-----------RD-TDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp TTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEE-----------ES-CBCTTCCCC------CCCCCCEEEEESC
T ss_pred HHhccccCCeecCCCC-ccccchhhhhhhcccccEEEC-----------CC-Cccccccccccccccccchhhccccccc
Confidence 22346666777664 345554332 23455555555 32 2333222111 123455666666664
Q ss_pred CC----cccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCC
Q 048135 1110 LD----AVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTS 1166 (1189)
Q Consensus 1110 ~~----l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1166 (1189)
.. +..+|... ..+++|+.|++++| .++.+|...+..+++|++|++++|+....
T Consensus 260 ~l~~~~l~~l~~~l---~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 260 KITDESLFQVMKLL---NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp BCCHHHHHHHHHHH---HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCcchhhhHHHH---hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 22 12344333 45677788888777 56677744457777888888877754443
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=1.3e-16 Score=178.10 Aligned_cols=251 Identities=16% Similarity=0.118 Sum_probs=157.2
Q ss_pred cCCCCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCCCcccCccccCcccccEEecccccccccccccc
Q 048135 488 FPEVECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTC 567 (1189)
Q Consensus 488 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~ 567 (1189)
+...+.|+.|....+.. ...++..|..+++|++|++++|.+..++. +..+++|++|++++|.++.+|.
T Consensus 30 ~~~~~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~--- 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPL--------SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV--- 97 (317)
T ss_dssp HTTGGGCSEEECTTSCC--------CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE---
T ss_pred hccCCCCCEEECcCCcc--------CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC---
Confidence 34566888887765532 12345668899999999999999987765 9999999999999999988874
Q ss_pred CCCCCcEEeccCccccccCchhhhccccCCcccccCCcccccC-CCCCCCCCCCceeCceecccCccccCCCCcchhhhh
Q 048135 568 SLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDVHLIKEM-PLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAIL 646 (1189)
Q Consensus 568 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l 646 (1189)
.++|++|++++| .+..+|.. .+++|++|++++|. +..+ |..++.+++|++|+.... .+.......+
T Consensus 98 -~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~~ 164 (317)
T 3o53_A 98 -GPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN--------EIDTVNFAEL 164 (317)
T ss_dssp -CTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS--------CCCEEEGGGG
T ss_pred -CCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC--------CCCcccHHHH
Confidence 489999999998 56666643 47899999999998 5544 446777777877754111 1111111111
Q ss_pred cCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCccc
Q 048135 647 SDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLC 726 (1189)
Q Consensus 647 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~ 726 (1189)
...+++|+.|++++|.+..+|... .+++|+.|++++|......+.+..++
T Consensus 165 ---------------------------~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~ 214 (317)
T 3o53_A 165 ---------------------------AASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAA 214 (317)
T ss_dssp ---------------------------GGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGT
T ss_pred ---------------------------hhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcccC
Confidence 112455666666666555554433 25666777776665433223456666
Q ss_pred CcceEeeccccCceEeCccccCCCCCCCCCccceeeccCcccccccCcCCcccccccCCcccEEeecCCCCccCCCCC
Q 048135 727 SLKALTIREMTELKIIGSEIYGDGCSKPFQSLETLCFRDLQEWELWDPIGKNEYVESFPLLRELSIVKCPKLSGRLPD 804 (1189)
Q Consensus 727 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~ 804 (1189)
+|+.|+++++ .+..++..+ ..+++|+.|++.+.+....... .....+++|+.+++.+++.+.+..|.
T Consensus 215 ~L~~L~L~~N-~l~~l~~~~------~~l~~L~~L~l~~N~~~~~~~~----~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 215 GVTWISLRNN-KLVLIEKAL------RFSQNLEHFDLRGNGFHCGTLR----DFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TCSEEECTTS-CCCEECTTC------CCCTTCCEEECTTCCCBHHHHH----HHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cccEEECcCC-cccchhhHh------hcCCCCCEEEccCCCccCcCHH----HHHhccccceEEECCCchhccCCchh
Confidence 7777777665 333444332 2256666666665432211100 11445677777777766666654443
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=1.5e-18 Score=206.01 Aligned_cols=86 Identities=21% Similarity=0.357 Sum_probs=44.0
Q ss_pred hhcCCCcceEEEeccCCCc-----ccCccccCcccccEEeccccccccc-cccc-cCCC----CCcEEeccCccccc---
Q 048135 519 LLPKFKKLRVLSLKSYHII-----ELPNSIGRLMHLRYLDMSNTAISSL-PEST-CSLI----NLQTLLLRRCFYLM--- 584 (1189)
Q Consensus 519 ~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~i~~L-P~~i-~~L~----~L~~L~L~~~~~l~--- 584 (1189)
.+..+++|++|++++|.+. .+|..+..+++|++|+|++|.+... +..+ ..+. +|++|++++|. +.
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~ 101 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAG 101 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGG
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHH
Confidence 3445555666666655554 3344555555566666665555432 2222 2233 45666665552 32
Q ss_pred --cCchhhhccccCCcccccCCc
Q 048135 585 --KWPSKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 585 --~lp~~i~~L~~L~~L~l~~~~ 605 (1189)
.+|..+.++++|++|++++|.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCc
Confidence 345555555566666655554
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=2.2e-14 Score=162.27 Aligned_cols=150 Identities=17% Similarity=0.093 Sum_probs=102.0
Q ss_pred CCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCC---CCCcCeEEEeccCCCccccccccCCCcccc
Q 048135 991 GRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGL---PNTLSRISIGKCENLVALPDRMHNLSSLQE 1067 (1189)
Q Consensus 991 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 1067 (1189)
+++|+.|++++|......+..+....++..|++.++..+..++...+ ...++.|++++ +.++.+|.......+|++
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDE 181 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhH
Confidence 34444444444433322233344556677788877777777776433 33677788887 567777766555555655
Q ss_pred ccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCC
Q 048135 1068 LEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGF 1147 (1189)
Q Consensus 1068 L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l 1147 (1189)
|++ ++++.++.+++..|..+++|++|++++| .+..+|.. .+.+|+.|.+.+|..++.+| .+
T Consensus 182 l~l-----------~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~-----~~~~L~~L~~l~~~~l~~lP--~l 242 (350)
T 4ay9_X 182 LNL-----------SDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY-----GLENLKKLRARSTYNLKKLP--TL 242 (350)
T ss_dssp EEC-----------TTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS-----SCTTCCEEECTTCTTCCCCC--CT
T ss_pred Hhh-----------ccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh-----hhccchHhhhccCCCcCcCC--Cc
Confidence 555 6677788888777888888888888885 67788763 45778888888888888888 47
Q ss_pred CCCCccCceeecc
Q 048135 1148 RNLTSLDLLRIRN 1160 (1189)
Q Consensus 1148 ~~l~~L~~L~l~~ 1160 (1189)
.++++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 7888888888764
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=6.6e-15 Score=161.65 Aligned_cols=247 Identities=15% Similarity=0.142 Sum_probs=133.9
Q ss_pred CCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc--CCCCCcceEEeecccCccccccccCCCCCCcc
Q 048135 903 LPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLLPLKKLQIRKCEKLKHLLDDRGHINSTST 980 (1189)
Q Consensus 903 l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 980 (1189)
+++|++|+++++ .++.++...+..+++|++|++++|. ++.+... ..+++|+.|+++++..++.++..
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~--------- 99 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPA--------- 99 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTT---------
T ss_pred CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHH---------
Confidence 445555555553 3444444434455555555555543 2222111 22345555665555434333111
Q ss_pred chhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCC--CCCCCcCeEEEeccCCCccccc-
Q 048135 981 SIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKG--GLPNTLSRISIGKCENLVALPD- 1057 (1189)
Q Consensus 981 ~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~--~~~~~L~~L~l~~c~~l~~lp~- 1057 (1189)
.+..+++|+.|++++|......|..+..+++|++|++++| .++.++.. ..+++|++|++++| .++.+|.
T Consensus 100 ------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 171 (285)
T 1ozn_A 100 ------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPER 171 (285)
T ss_dssp ------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTT
T ss_pred ------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHH
Confidence 1233455666666666555555666777777888888777 35555543 23457778887774 4555553
Q ss_pred cccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCC
Q 048135 1058 RMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFP 1137 (1189)
Q Consensus 1058 ~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~ 1137 (1189)
.+..+++|++|++ ..+.+..+.+..+..+++|+.|++++| .+..++... +..+++|+.|++++|+
T Consensus 172 ~~~~l~~L~~L~l------------~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 172 AFRGLHSLDRLLL------------HQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEA--LAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTCTTCCEEEC------------CSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHH--HTTCTTCCEEECCSSC
T ss_pred HhcCccccCEEEC------------CCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHH--cccCcccCEEeccCCC
Confidence 3566666666666 344555555556777788888888875 444555432 2456778888887775
Q ss_pred CCcccCcCCCCCCCccCceeeccCCCCCCCCC---CCCCCCcceeeecCCC
Q 048135 1138 ELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPE---VGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1138 ~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~---~~~~~sL~~L~i~~c~ 1185 (1189)
.....+..+ ....++.+....+......|. +.....++..++.+|.
T Consensus 237 ~~c~~~~~~--~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 237 WVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp EECSGGGHH--HHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred ccCCCCcHH--HHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 544333111 113344444444333334443 2345567777777773
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=1.4e-14 Score=158.52 Aligned_cols=198 Identities=20% Similarity=0.220 Sum_probs=126.8
Q ss_pred CCCccceEEEccCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccc
Q 048135 927 NNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRK 1006 (1189)
Q Consensus 927 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~ 1006 (1189)
.++++++++++++ .++.+|. ..+++++.|+++++. ++.
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip~-~~~~~l~~L~L~~N~-l~~--------------------------------------- 45 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALPP-DLPKDTTILHLSENL-LYT--------------------------------------- 45 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCCS-CCCTTCCEEECTTSC-CSE---------------------------------------
T ss_pred ccCCccEEECCCC-CCCcCCC-CCCCCCCEEEcCCCc-CCc---------------------------------------
Confidence 5667777777763 3555553 356667777777643 222
Q ss_pred cCCCCCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCC
Q 048135 1007 SMPESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNL 1086 (1189)
Q Consensus 1007 ~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~ 1086 (1189)
..+..+..+++|++|++++| .++.++..+.+++|++|++++ +.++.+|..+..+++|++|++ +.+.
T Consensus 46 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l------------~~N~ 111 (290)
T 1p9a_G 46 FSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDV------------SFNR 111 (290)
T ss_dssp EEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEEC------------CSSC
T ss_pred cCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEEECCC-CcCCcCchhhccCCCCCEEEC------------CCCc
Confidence 22334556677777777776 455665555566777777777 456667766666666666666 4556
Q ss_pred cccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCC
Q 048135 1087 YKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTS 1166 (1189)
Q Consensus 1087 l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1166 (1189)
++.+++..|..+++|++|++++| .+..+|... +..+++|+.|++++| .++.+|...+..+++|+.|++++| .++.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ 186 (290)
T 1p9a_G 112 LTSLPLGALRGLGELQELYLKGN-ELKTLPPGL--LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYT 186 (290)
T ss_dssp CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred CcccCHHHHcCCCCCCEEECCCC-CCCccChhh--cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCc
Confidence 66666666777777777777775 455565533 245677777777777 566777555677777777777774 5667
Q ss_pred CCC-CCCCCCcceeeecCCC
Q 048135 1167 FPE-VGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1167 lp~-~~~~~sL~~L~i~~c~ 1185 (1189)
+|. .....+|+.|+++++|
T Consensus 187 ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCC
T ss_pred cChhhcccccCCeEEeCCCC
Confidence 765 3334567777777665
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=4.1e-15 Score=165.34 Aligned_cols=201 Identities=16% Similarity=0.164 Sum_probs=109.2
Q ss_pred CCCcceEEEeccCCCc-ccCccc--cCcccccEEeccccccccccccccCC-----CCCcEEeccCccccccCc-hhhhc
Q 048135 522 KFKKLRVLSLKSYHII-ELPNSI--GRLMHLRYLDMSNTAISSLPESTCSL-----INLQTLLLRRCFYLMKWP-SKVMN 592 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~-~lp~~i--~~l~~L~~L~L~~~~i~~LP~~i~~L-----~~L~~L~L~~~~~l~~lp-~~i~~ 592 (1189)
.+++|++|++++|.++ .+|..+ +.+++|++|+|++|.+..+|..++.+ ++|++|++++| .+..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence 4667777777777766 456655 67777777777777777666666666 67777777776 344444 56677
Q ss_pred cccCCcccccCCccccc--CCCCC--CCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchH
Q 048135 593 LINLRHLDITDVHLIKE--MPLGM--EEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQ 668 (1189)
Q Consensus 593 L~~L~~L~l~~~~~~~~--~p~~i--~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 668 (1189)
+++|++|++++|..... +|..+ +.+++|++|+...+. +..+.......+..+++|+.|+++++.-....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 244 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-----METPSGVCSALAAARVQLQGLDLSHNSLRDAA-- 244 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-----CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC--
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-----CcchHHHHHHHHhcCCCCCEEECCCCcCCccc--
Confidence 77777777777763322 23333 566666666432110 11111111222344556666666543211100
Q ss_pred HHhccCCCCCCcceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccc
Q 048135 669 SVLGMLKSHTSLKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREM 736 (1189)
Q Consensus 669 ~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~ 736 (1189)
....+..+++|+.|++++|.++.+|.++. ++|+.|++++|.. ..+|.+..+++|+.|+++++
T Consensus 245 -~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 245 -GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp -CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTC
T ss_pred -chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCC-CCChhHhhCCCCCEEeccCC
Confidence 01222334556666666666555555442 5566666665542 23344555566666665553
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=4.5e-14 Score=154.97 Aligned_cols=218 Identities=19% Similarity=0.184 Sum_probs=122.0
Q ss_pred cEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc--CCCCCcceEEeecccCccccccccCCCCCCccchhh
Q 048135 907 GELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIK 984 (1189)
Q Consensus 907 ~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~ 984 (1189)
+.++.++ ..++.+|..+ .++|++|+++++. ++.++.. ..+++|+.|+++++. ++.+..
T Consensus 14 ~~~~c~~-~~l~~ip~~~---~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-------------- 73 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGI---PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDA-------------- 73 (285)
T ss_dssp CEEECCS-SCCSSCCTTC---CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECT--------------
T ss_pred eEEEcCc-CCcccCCcCC---CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCH--------------
Confidence 4566655 4677777654 3678888888754 4444432 335678888887753 332211
Q ss_pred hhccccCCCCCccccccccccccC-CCCCCCCCccceEeeccCCCCcccCCC--CCCCCcCeEEEeccCCCcccc-cccc
Q 048135 985 YLYVSYGRSLGENMTWKFEIRKSM-PESPINLECLHQIYIWDCSSFTSFPKG--GLPNTLSRISIGKCENLVALP-DRMH 1060 (1189)
Q Consensus 985 ~l~l~~~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~--~~~~~L~~L~l~~c~~l~~lp-~~~~ 1060 (1189)
-.+.++++|+.|++++|..++.+ |..+..+++|++|++++|. ++.++.. ..+++|++|++++| .++.+| ..+.
T Consensus 74 -~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 150 (285)
T 1ozn_A 74 -AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFR 150 (285)
T ss_dssp -TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred -hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhc
Confidence 12344566666666666644444 5556666677777776663 3344332 22346666666663 344443 2345
Q ss_pred CCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCc
Q 048135 1061 NLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELK 1140 (1189)
Q Consensus 1061 ~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 1140 (1189)
.+++|++|++ ..+.++.+++..+..+++|++|++++|......|... ..+++|+.|++++| .+.
T Consensus 151 ~l~~L~~L~l------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n-~l~ 214 (285)
T 1ozn_A 151 DLGNLTHLFL------------HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF---RDLGRLMTLYLFAN-NLS 214 (285)
T ss_dssp TCTTCCEEEC------------CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT---TTCTTCCEEECCSS-CCS
T ss_pred cCCCccEEEC------------CCCcccccCHHHhcCccccCEEECCCCcccccCHhHc---cCcccccEeeCCCC-cCC
Confidence 5555555555 3344555555556666666666666654332223322 45566666666666 444
Q ss_pred ccCcCCCCCCCccCceeeccCCC
Q 048135 1141 HLSSKGFRNLTSLDLLRIRNCPK 1163 (1189)
Q Consensus 1141 ~l~~~~l~~l~~L~~L~l~~c~~ 1163 (1189)
.++...+..+++|+.|++++|+.
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCCHHHcccCcccCEEeccCCCc
Confidence 55534456666666666666543
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=1e-14 Score=172.30 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=98.2
Q ss_pred CCccceEeeccCCCCcccCCC--CCCCCcCeEEEeccCCCcccccccc-CCCccccccccCCCCCcceeeccCCCccccc
Q 048135 1015 LECLHQIYIWDCSSFTSFPKG--GLPNTLSRISIGKCENLVALPDRMH-NLSSLQELEICFPTSLTTLTIEDFNLYKPLI 1091 (1189)
Q Consensus 1015 l~~L~~L~l~~~~~l~~~p~~--~~~~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~ 1091 (1189)
+++|+.|++++|. ++.++.. +.+++|+.|++++|......|..+. ++++|++|++ +.|.++.++
T Consensus 119 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L------------s~N~l~~~~ 185 (487)
T 3oja_A 119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL------------QYNFIYDVK 185 (487)
T ss_dssp CSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC------------TTSCCCEEE
T ss_pred cCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec------------CCCcccccc
Confidence 5778888888874 4444322 3356888888888654444555554 5677777776 344566554
Q ss_pred ccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCC-CCCCC-
Q 048135 1092 EWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKL-TSFPE- 1169 (1189)
Q Consensus 1092 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l-~~lp~- 1169 (1189)
+ ...+++|+.|+|++| .+..+|... ..+++|+.|++++| .+..+| ..+..+++|+.|++++|+.. ..+|.
T Consensus 186 ~--~~~l~~L~~L~Ls~N-~l~~~~~~~---~~l~~L~~L~Ls~N-~l~~lp-~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 186 G--QVVFAKLKTLDLSSN-KLAFMGPEF---QSAAGVTWISLRNN-KLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp C--CCCCTTCCEEECCSS-CCCEECGGG---GGGTTCSEEECTTS-CCCEEC-TTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred c--cccCCCCCEEECCCC-CCCCCCHhH---cCCCCccEEEecCC-cCcccc-hhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 3 446888999999886 466666654 46688899999888 666788 66888888999999887654 23332
Q ss_pred CCCCCCcceeeec
Q 048135 1170 VGLPSSLLQLYID 1182 (1189)
Q Consensus 1170 ~~~~~sL~~L~i~ 1182 (1189)
.+..++|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 2344566666654
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=1.7e-14 Score=159.76 Aligned_cols=188 Identities=17% Similarity=0.204 Sum_probs=107.0
Q ss_pred CCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCccccc
Q 048135 523 FKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDIT 602 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 602 (1189)
+++|++|+++++.+..+| .+..+++|++|++++|.+..+|. +.++++|++|++++| .+..+| .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECC
Confidence 446666677766666665 46666677777777766666665 666677777777766 455554 46666677777776
Q ss_pred CCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcce
Q 048135 603 DVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKE 682 (1189)
Q Consensus 603 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~ 682 (1189)
+|. +..+|. +..+++|++|+..... +..... +..+++|+.|+++.+.-.. +..+..+++|+.
T Consensus 116 ~n~-l~~~~~-l~~l~~L~~L~l~~n~--------l~~~~~--l~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~ 177 (308)
T 1h6u_A 116 STQ-ITDVTP-LAGLSNLQVLYLDLNQ--------ITNISP--LAGLTNLQYLSIGNAQVSD------LTPLANLSKLTT 177 (308)
T ss_dssp TSC-CCCCGG-GTTCTTCCEEECCSSC--------CCCCGG--GGGCTTCCEEECCSSCCCC------CGGGTTCTTCCE
T ss_pred CCC-CCCchh-hcCCCCCCEEECCCCc--------cCcCcc--ccCCCCccEEEccCCcCCC------ChhhcCCCCCCE
Confidence 665 455543 5566666665432111 111110 3344455555554332110 111455566667
Q ss_pred EEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccc
Q 048135 683 LTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREM 736 (1189)
Q Consensus 683 L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~ 736 (1189)
|+++++.+..+|. +. .+++|+.|++++|.. ..++++..+++|+.|+++++
T Consensus 178 L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 178 LKADDNKISDISP-LA--SLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp EECCSSCCCCCGG-GG--GCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEE
T ss_pred EECCCCccCcChh-hc--CCCCCCEEEccCCcc-CccccccCCCCCCEEEccCC
Confidence 7776666666554 21 366677777776643 33445666677777777654
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=1.1e-13 Score=156.53 Aligned_cols=238 Identities=18% Similarity=0.184 Sum_probs=175.1
Q ss_pred cEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccC--CCCCcceEEeec
Q 048135 884 KKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQ--LLLPLKKLQIRK 961 (1189)
Q Consensus 884 ~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~ 961 (1189)
++++-++ ..++.+|. ..++++++|+++++ .++.+|...+..+++|++|+|++|..++.++... .++++.++.+.+
T Consensus 12 ~~v~C~~-~~Lt~iP~-~l~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPS-DLPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEES-TTCCSCCT-TCCTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecC-CCCCccCc-CcCCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3455554 35667764 23678999999985 6888888877788889999998887666665442 234555555555
Q ss_pred ccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCC--
Q 048135 962 CEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPN-- 1039 (1189)
Q Consensus 962 c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~-- 1039 (1189)
+++++.++ |..+..+++|++|++++| .++.+|...+..
T Consensus 89 ~N~l~~l~---------------------------------------~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~ 128 (350)
T 4ay9_X 89 ANNLLYIN---------------------------------------PEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSL 128 (350)
T ss_dssp ETTCCEEC---------------------------------------TTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBS
T ss_pred CCcccccC---------------------------------------chhhhhcccccccccccc-ccccCCchhhcccc
Confidence 55554332 456888999999999998 577777654443
Q ss_pred CcCeEEEeccCCCccccc-cccCCC-ccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCcc
Q 048135 1040 TLSRISIGKCENLVALPD-RMHNLS-SLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQ 1117 (1189)
Q Consensus 1040 ~L~~L~l~~c~~l~~lp~-~~~~l~-~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~ 1117 (1189)
++..|++.+++.+..+|. .+..+. .++.|++ +.|.++.+++..+ ..++|++|++.+++.++.+|.
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L------------~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWL------------NKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC------------CSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCT
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhcc------------ccccccCCChhhc-cccchhHHhhccCCcccCCCH
Confidence 677889989888988874 344443 4566666 5677888876555 457899999999999999997
Q ss_pred ccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCCCCCCCcceeeecC
Q 048135 1118 EELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEVGLPSSLLQLYIDG 1183 (1189)
Q Consensus 1118 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~ 1183 (1189)
+. |..+++|+.|++++| .++.+|..+ +.+|+.|.+.+|+.++.+|....+++|+.+++.+
T Consensus 196 ~~--f~~l~~L~~LdLs~N-~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 196 DV--FHGASGPVILDISRT-RIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp TT--TTTEECCSEEECTTS-CCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred HH--hccCcccchhhcCCC-CcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 54 467899999999999 799999544 4566677777788899999877788999998864
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=4.5e-14 Score=154.51 Aligned_cols=172 Identities=19% Similarity=0.182 Sum_probs=83.7
Q ss_pred CcceEEEeccCCCccc-CccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCccccc
Q 048135 524 KKLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDIT 602 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 602 (1189)
+.+++|++++|.+..+ |..|.++++|++|+|++|.|+.+|.. +.+++|++|++++| .+..+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence 3455555555555544 34455555555555555555555443 45555555555555 445555555555555555555
Q ss_pred CCcccccCC-CCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcc
Q 048135 603 DVHLIKEMP-LGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLK 681 (1189)
Q Consensus 603 ~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~ 681 (1189)
+|. +..+| ..+..+++|++|+ ++.+.- .......+..+++|+
T Consensus 109 ~N~-l~~l~~~~~~~l~~L~~L~--------------------------------L~~N~l----~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 109 FNR-LTSLPLGALRGLGELQELY--------------------------------LKGNEL----KTLPPGLLTPTPKLE 151 (290)
T ss_dssp SSC-CCCCCSSTTTTCTTCCEEE--------------------------------CTTSCC----CCCCTTTTTTCTTCC
T ss_pred CCc-CcccCHHHHcCCCCCCEEE--------------------------------CCCCCC----CccChhhcccccCCC
Confidence 554 33443 2244444444442 221100 000011233445555
Q ss_pred eEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccc
Q 048135 682 ELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREM 736 (1189)
Q Consensus 682 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~ 736 (1189)
.|++++|.+..+|..+.. .+++|+.|++++|... .+| .+..+++|+.|+++++
T Consensus 152 ~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred EEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 666665555555543321 3556666666655432 343 3444555666666554
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=1.4e-15 Score=169.16 Aligned_cols=56 Identities=25% Similarity=0.404 Sum_probs=26.9
Q ss_pred CCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCCCCCCCcceeeecCCC
Q 048135 1125 PTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEVGLPSSLLQLYIDGCP 1185 (1189)
Q Consensus 1125 ~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~ 1185 (1189)
+++|+.|++++| .++.+| ..+. ++|++|++++| +++.+|....+++|++|++++++
T Consensus 252 l~~L~~L~Ls~N-~l~~ip-~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQVP-KGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTS-CCSSCC-SSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred cCCCCEEECCCC-ccChhh-hhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 345555555555 334454 3332 45555555553 44444444444555555555543
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.53 E-value=5.6e-17 Score=192.34 Aligned_cols=234 Identities=18% Similarity=0.147 Sum_probs=138.3
Q ss_pred cCCCCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCCCccc-Cccc-cCcc----cccEEeccccccc-
Q 048135 488 FPEVECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHIIEL-PNSI-GRLM----HLRYLDMSNTAIS- 560 (1189)
Q Consensus 488 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i-~~l~----~L~~L~L~~~~i~- 560 (1189)
+..++.|+.+....+.. .......++..+..+++|++|++++|.+... +..+ ..+. +|++|+|++|.+.
T Consensus 24 ~~~~~~L~~L~L~~~~l----~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGL----TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHTTCSEEEEESSCC----CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HhhcCCccEEEccCCCC----CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 44566777776654432 1111224556778889999999999998653 3333 3344 6999999999888
Q ss_pred ----cccccccCCCCCcEEeccCcccccc-Cchhhh-----ccccCCcccccCCcccc----cCCCCCCCCCCCceeCce
Q 048135 561 ----SLPESTCSLINLQTLLLRRCFYLMK-WPSKVM-----NLINLRHLDITDVHLIK----EMPLGMEEWKCLQTLSNF 626 (1189)
Q Consensus 561 ----~LP~~i~~L~~L~~L~L~~~~~l~~-lp~~i~-----~L~~L~~L~l~~~~~~~----~~p~~i~~L~~L~~L~~~ 626 (1189)
.+|..+.++++|++|++++|. +.. -+..+. .+++|++|++++|.... .++..+..+++|++|+..
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 568889999999999999985 432 233333 25679999999987322 234445566777777542
Q ss_pred ecccCccccCCCCcchhhhh-----cCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCC------CC
Q 048135 627 IVSEGLENATDLQDPTKAIL-----SDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRF------PS 695 (1189)
Q Consensus 627 ~~~~~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~------p~ 695 (1189)
.+. +.+.....+ ...++|+.|+++++.-...........+..+++|++|+++++..... +.
T Consensus 179 ~n~--------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 179 NND--------INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp SSB--------CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CCC--------cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 211 111111111 12457777777655322222222344455567777777776654331 11
Q ss_pred CCCCCCCCceeEEEecCCCCCCC----CC-CCCcccCcceEeeccc
Q 048135 696 WVGDPSFSNIVMITLESCTNCRS----LP-SLGLLCSLKALTIREM 736 (1189)
Q Consensus 696 ~~~~~~~~~L~~L~l~~~~~~~~----lp-~l~~l~~L~~L~L~~~ 736 (1189)
+.. .+++|+.|++++|..... ++ .+..+++|+.|+++++
T Consensus 251 ~~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 251 LLH--PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HTS--TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred Hhc--CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 111 256777777777743221 23 3445667777777665
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=2.3e-13 Score=147.72 Aligned_cols=198 Identities=19% Similarity=0.228 Sum_probs=121.7
Q ss_pred ccceEEEccCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCC
Q 048135 930 CLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMP 1009 (1189)
Q Consensus 930 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp 1009 (1189)
..+.+++++. .++.+|. ..+++++.|+++++. ++.++. -.+.++++|+.|++++|.....-+
T Consensus 17 ~~~~l~~~~~-~l~~ip~-~~~~~l~~L~l~~n~-l~~~~~---------------~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPS-NIPADTKKLDLQSNK-LSSLPS---------------KAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp TTTEEECTTS-CCSSCCS-CCCTTCSEEECCSSC-CSCCCT---------------TSSSSCTTCCEEECCSSCCSCCCT
T ss_pred CCCEEEccCC-CCCccCC-CCCCCCCEEECcCCC-CCeeCH---------------HHhcCCCCCCEEECCCCccCeeCh
Confidence 4667877763 4556654 467788888888854 433321 123456677777777765443333
Q ss_pred CCCCCCCccceEeeccCCCCcccCCCC--CCCCcCeEEEeccCCCcccc-ccccCCCccccccccCCCCCcceeeccCCC
Q 048135 1010 ESPINLECLHQIYIWDCSSFTSFPKGG--LPNTLSRISIGKCENLVALP-DRMHNLSSLQELEICFPTSLTTLTIEDFNL 1086 (1189)
Q Consensus 1010 ~~~~~l~~L~~L~l~~~~~l~~~p~~~--~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~ 1086 (1189)
..+..+++|++|++++| .++.+|... .+++|++|++++| .++.+| ..+.++++|++|++ +.+.
T Consensus 79 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L------------s~n~ 144 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSL------------GYNE 144 (270)
T ss_dssp TTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC------------CSSC
T ss_pred hhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEEC------------CCCc
Confidence 34566777777777776 355555432 2347777777774 344443 34556666666666 3445
Q ss_pred cccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCC
Q 048135 1087 YKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPK 1163 (1189)
Q Consensus 1087 l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 1163 (1189)
++.+++..+..+++|++|++++| .+..++... +..+++|+.|++++| .+..+|...+..+++|+.|++++||.
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGA--FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCHhHccCCcccceeEecCC-cCcEeChhH--hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 66666656677777777777775 455555432 245677777777777 55666645567777777777777653
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=1.8e-14 Score=170.23 Aligned_cols=199 Identities=12% Similarity=0.009 Sum_probs=109.6
Q ss_pred ccccCCCCCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCC
Q 048135 874 PIRLHGLTSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLP 953 (1189)
Q Consensus 874 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 953 (1189)
|..+..+++|++|++++|.. ...+....+++|++|++++| .++.+|. .++|+.|++++|. +..++.. .+++
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L~~L~L~~N~-l~~~~~~-~l~~ 121 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHAANNN-ISRVSCS-RGQG 121 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCC-EEEEECTTCTTCCEEECCSS-EEEEEEE-----CTTCCEEECCSSC-CCCEEEC-CCSS
T ss_pred HHHHhCCCCCCEEEeeCCCC-CCCcccccCCCCCEEEecCC-cCCCCCC-----CCCcCEEECcCCc-CCCCCcc-ccCC
Confidence 34666777777777777653 33333566777777777775 4555543 2667777777654 3333322 2356
Q ss_pred cceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCC-CCCccceEeeccCCCCccc
Q 048135 954 LKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPI-NLECLHQIYIWDCSSFTSF 1032 (1189)
Q Consensus 954 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~l~~~ 1032 (1189)
|+.|++++|.- ..++ ...+.++++|+.|++++|......|..+. .+++|+.|++++| .++.+
T Consensus 122 L~~L~L~~N~l-~~~~---------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~ 184 (487)
T 3oja_A 122 KKNIYLANNKI-TMLR---------------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDV 184 (487)
T ss_dssp CEEEECCSSCC-CSGG---------------GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEE
T ss_pred CCEEECCCCCC-CCCC---------------chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccc
Confidence 77777776532 2211 11233455666666666655554554443 4666666666666 35555
Q ss_pred CCCCCCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCc
Q 048135 1033 PKGGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDA 1112 (1189)
Q Consensus 1033 p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l 1112 (1189)
|....+++|+.|++++ +.++.+|..+..+++|+.|++ +.|.+..+|. .+..+++|+.|++++|+..
T Consensus 185 ~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~L------------s~N~l~~lp~-~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISL------------RNNKLVLIEK-ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEEC------------TTSCCCEECT-TCCCCTTCCEEECTTCCBC
T ss_pred cccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEe------------cCCcCcccch-hhccCCCCCEEEcCCCCCc
Confidence 5544555666666666 345555555555555555555 2344444443 2555566666666665443
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.9e-13 Score=148.33 Aligned_cols=172 Identities=27% Similarity=0.352 Sum_probs=87.6
Q ss_pred cceEEEeccCCCcccC-ccccCcccccEEecccccccccccc-ccCCCCCcEEeccCccccccCchh-hhccccCCcccc
Q 048135 525 KLRVLSLKSYHIIELP-NSIGRLMHLRYLDMSNTAISSLPES-TCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLDI 601 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 601 (1189)
+|+.|++++|.+..+| ..|.++++|++|++++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEEC
Confidence 4666666666666554 3456666666666666666666544 355666666666665 34444432 355666666666
Q ss_pred cCCcccccCCC-CCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCc
Q 048135 602 TDVHLIKEMPL-GMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSL 680 (1189)
Q Consensus 602 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L 680 (1189)
++|. +..+|. .++.+++|++|+ ++++.-. ......+..+++|
T Consensus 117 ~~n~-l~~~~~~~~~~l~~L~~L~--------------------------------Ls~n~l~----~~~~~~~~~l~~L 159 (270)
T 2o6q_A 117 DRNQ-LKSLPPRVFDSLTKLTYLS--------------------------------LGYNELQ----SLPKGVFDKLTSL 159 (270)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEE--------------------------------CCSSCCC----CCCTTTTTTCTTC
T ss_pred CCCc-cCeeCHHHhCcCcCCCEEE--------------------------------CCCCcCC----ccCHhHccCCccc
Confidence 6655 333332 234444444443 2211100 0001123445566
Q ss_pred ceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC--CCCcccCcceEeeccc
Q 048135 681 KELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP--SLGLLCSLKALTIREM 736 (1189)
Q Consensus 681 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp--~l~~l~~L~~L~L~~~ 736 (1189)
+.|+++++.+..+|..... .+++|+.|++++|.. ..+| .+..+++|+.|+++++
T Consensus 160 ~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSS
T ss_pred ceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcC-CcCCHHHhccccCCCEEEecCC
Confidence 6666666655555543211 356666666666643 2333 2555666666666554
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=7.3e-14 Score=151.78 Aligned_cols=174 Identities=20% Similarity=0.270 Sum_probs=100.9
Q ss_pred CCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchh-hhccccCCccc
Q 048135 522 KFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLD 600 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 600 (1189)
.+++|+.|+++++.+..++ .++.+++|++|++++|.+..+| .++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEE
Confidence 4567777777777777665 3677777888888777777764 5777777888888777 45555543 57777778777
Q ss_pred ccCCcccccCCCC-CCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 601 ITDVHLIKEMPLG-MEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 601 l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
+++|. +..+|.. ++.+++|++|+...+ ++..+ ....+..+++
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n----------------------~l~~~--------------~~~~~~~l~~ 158 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYLNLAHN----------------------QLQSL--------------PKGVFDKLTN 158 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSS----------------------CCCCC--------------CTTTTTTCTT
T ss_pred CCCCc-CCccCHHHhccCCCCCEEECCCC----------------------ccCcc--------------CHHHhccCcc
Confidence 77776 4444433 455555555532110 00000 0011233455
Q ss_pred cceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccc
Q 048135 680 LKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREM 736 (1189)
Q Consensus 680 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~ 736 (1189)
|+.|++++|....+|..... .+++|+.|++++|......+ .++.+++|+.|+++++
T Consensus 159 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 55556665555555443211 35666666666665433222 2556666666666654
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=1.4e-13 Score=150.11 Aligned_cols=199 Identities=19% Similarity=0.157 Sum_probs=115.8
Q ss_pred cceEEEeccCCCcccCc-cccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccCc-hhhhccccCCcccc
Q 048135 525 KLRVLSLKSYHIIELPN-SIGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKWP-SKVMNLINLRHLDI 601 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 601 (1189)
+|++|++++|.++.++. .|.++++|++|++++|.+..+|. .+.++++|++|++++| .+..+| ..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEEC
Confidence 56666666666666643 56666666666666666666643 4666666666666666 344333 45666666666666
Q ss_pred cCCcccccCCC-CCCCCCCCceeCceecccCccccCCCCcc-hhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 602 TDVHLIKEMPL-GMEEWKCLQTLSNFIVSEGLENATDLQDP-TKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 602 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
++|. +..++. .++++++|++|+.... .+... ....+..+++|+.|+++++.-. ......+..+..++.
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHN--------LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPL 177 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSS--------CCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTT
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCC--------ccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhccc
Confidence 6665 343333 4666666666643211 11111 1233555666666666644211 111112222233333
Q ss_pred cc-eEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCC--CCCcccCcceEeecccc
Q 048135 680 LK-ELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLP--SLGLLCSLKALTIREMT 737 (1189)
Q Consensus 680 L~-~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp--~l~~l~~L~~L~L~~~~ 737 (1189)
|. .|+++++.+..+|..... ..+|+.|++++|.. ..+| .++.+++|+.|++++++
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCC-SCCCTTTTTTCCSCCEEECCSSC
T ss_pred cceeeecCCCcccccCccccC--CCcccEEECCCCce-eecCHhHhcccccccEEEccCCc
Confidence 33 788888888777665542 45899999998864 4455 36788999999998764
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.45 E-value=7.2e-13 Score=144.55 Aligned_cols=211 Identities=19% Similarity=0.217 Sum_probs=133.9
Q ss_pred cccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCccccccc--CCCCCcceEEeecccCccccccc
Q 048135 894 LVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKG--QLLLPLKKLQIRKCEKLKHLLDD 971 (1189)
Q Consensus 894 l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~ 971 (1189)
+..+|. ..+++|++|++++| .++.++...+..+++|++|++++|. ++.++.. ..+++|+.|+++++
T Consensus 19 l~~ip~-~l~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n--------- 86 (276)
T 2z62_A 19 FYKIPD-NLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN--------- 86 (276)
T ss_dssp CSSCCS-SSCTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC---------
T ss_pred ccccCC-CCCCCccEEECCCC-cccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC---------
Confidence 344443 23567888888885 5666666555577778888887763 3333322 22345555555553
Q ss_pred cCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCC--CCCCCCcCeEEEecc
Q 048135 972 RGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPK--GGLPNTLSRISIGKC 1049 (1189)
Q Consensus 972 ~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~--~~~~~~L~~L~l~~c 1049 (1189)
......+..+..+++|++|++++|. +..++. ....++|++|++++|
T Consensus 87 -------------------------------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 87 -------------------------------PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp -------------------------------CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS
T ss_pred -------------------------------ccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC
Confidence 3333334556677888888887773 444443 233457888888884
Q ss_pred CCCcc--ccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccc----eEEEcccCCcccCccccccCC
Q 048135 1050 ENLVA--LPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALR----NLSIGGCLDAVSFPQEELGMM 1123 (1189)
Q Consensus 1050 ~~l~~--lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~----~L~l~~c~~l~~l~~~~~~~~ 1123 (1189)
. ++. +|..+.++++|++|++ +.+.++.+++..+..+++|+ .|++++| .+..++... .
T Consensus 135 ~-l~~~~l~~~~~~l~~L~~L~L------------s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~---~ 197 (276)
T 2z62_A 135 L-IQSFKLPEYFSNLTNLEHLDL------------SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA---F 197 (276)
T ss_dssp C-CCCCCCCGGGGGCTTCCEEEC------------CSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTS---S
T ss_pred c-cceecCchhhccCCCCCEEEC------------CCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccc---c
Confidence 3 443 5677777777777777 44556655555566666666 7888875 455665543 2
Q ss_pred CCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCC
Q 048135 1124 LPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTS 1166 (1189)
Q Consensus 1124 ~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1166 (1189)
...+|+.|++++| .++.+|...+..+++|+.|++++|+.-..
T Consensus 198 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 198 KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCccccc
Confidence 3457888898888 57777756678888899999988654433
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=9.2e-15 Score=165.08 Aligned_cols=202 Identities=14% Similarity=0.113 Sum_probs=123.8
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEecccccccc--ccccccCCCCCcEEeccCccccccCchhhhccccCCcccc
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISS--LPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDI 601 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~--LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 601 (1189)
+++++|+++++.+...+..+.++++|++|++++|.+.. +|..+..+++|++|++++|......|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67888888888888776667788888888888888763 7777888888888888888533456777888888888888
Q ss_pred cCCcccc--cCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCC-
Q 048135 602 TDVHLIK--EMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHT- 678 (1189)
Q Consensus 602 ~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~- 678 (1189)
++|..+. .+|..+.++++|++| +++++.... .......+..++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L--------------------------------~l~~~~~l~--~~~~~~~~~~l~~ 195 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDEL--------------------------------NLSWCFDFT--EKHVQVAVAHVSE 195 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEE--------------------------------ECCCCTTCC--HHHHHHHHHHSCT
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEE--------------------------------cCCCCCCcC--hHHHHHHHHhccc
Confidence 8884343 244434445555555 443321111 111222233445
Q ss_pred CcceEEEeeeC--C--CCCCCCCCCCCCCceeEEEecCCCCC--CCCCCCCcccCcceEeeccccCceEeCccccCCCCC
Q 048135 679 SLKELTIKCYG--G--TRFPSWVGDPSFSNIVMITLESCTNC--RSLPSLGLLCSLKALTIREMTELKIIGSEIYGDGCS 752 (1189)
Q Consensus 679 ~L~~L~l~~~~--~--~~~p~~~~~~~~~~L~~L~l~~~~~~--~~lp~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 752 (1189)
+|++|+++++. . ..+|..+. .+++|+.|++++|... ..++.++.+++|+.|++++|..+...+.. ..
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~l 268 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-----EL 268 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-----GG
T ss_pred CCCEEEeCCCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-----HH
Confidence 66666666552 2 22333332 3667777777777632 22345677777888888776522211100 11
Q ss_pred CCCCccceeeccCc
Q 048135 753 KPFQSLETLCFRDL 766 (1189)
Q Consensus 753 ~~f~~L~~L~l~~~ 766 (1189)
..+++|+.|++.++
T Consensus 269 ~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 269 GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeccCc
Confidence 23667777777665
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=4.8e-13 Score=148.54 Aligned_cols=149 Identities=11% Similarity=0.083 Sum_probs=69.2
Q ss_pred CCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcc--cCCC---CCCCCcCeEEEeccCCCcccccc----ccC
Q 048135 991 GRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTS--FPKG---GLPNTLSRISIGKCENLVALPDR----MHN 1061 (1189)
Q Consensus 991 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~--~p~~---~~~~~L~~L~l~~c~~l~~lp~~----~~~ 1061 (1189)
+++|+.|++++|......|..+..+++|++|++++|...+. ++.. +..++|++|++++| .++.+|.. +.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhc
Confidence 34444444444444344445566677777777777753321 2111 22346666666663 34433321 233
Q ss_pred CCccccccccCCCCCcceeeccCCCcccccccCCCCC---CccceEEEcccCCcccCccccccCCCCCccceeecccCCC
Q 048135 1062 LSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKL---TALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPE 1138 (1189)
Q Consensus 1062 l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l---~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~ 1138 (1189)
+++|++|++ +.|.+....+..+..+ ++|++|++++| .+..+|... +++|+.|++++| .
T Consensus 223 l~~L~~L~L------------s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-----~~~L~~L~Ls~N-~ 283 (310)
T 4glp_A 223 GVQPHSLDL------------SHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-----PAKLRVLDLSSN-R 283 (310)
T ss_dssp TCCCSSEEC------------TTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-----CSCCSCEECCSC-C
T ss_pred CCCCCEEEC------------CCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-----cCCCCEEECCCC-c
Confidence 444444444 2333333322222332 45555555553 333454422 245555555555 3
Q ss_pred CcccCcCCCCCCCccCceeeccC
Q 048135 1139 LKHLSSKGFRNLTSLDLLRIRNC 1161 (1189)
Q Consensus 1139 l~~l~~~~l~~l~~L~~L~l~~c 1161 (1189)
+..+| .+..+++|+.|++++|
T Consensus 284 l~~~~--~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 284 LNRAP--QPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCSCC--CTTSCCCCSCEECSST
T ss_pred CCCCc--hhhhCCCccEEECcCC
Confidence 44444 1444555555555554
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=4.7e-13 Score=146.62 Aligned_cols=168 Identities=16% Similarity=0.194 Sum_probs=120.4
Q ss_pred CCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccc
Q 048135 522 KFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDI 601 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 601 (1189)
.+++|+.|++++|.+..+|. ++.+++|++|++++|.++.+|. ++++++|++|++++| .+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 45678888888888888864 7888888888888888888877 888888888888887 5666654 888888888888
Q ss_pred cCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcc
Q 048135 602 TDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLK 681 (1189)
Q Consensus 602 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~ 681 (1189)
++|. +..++ .+..+++|+.|+. +.+.-.. +..+..+++|+
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L~l--------------------------------~~n~l~~------~~~l~~l~~L~ 159 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESLYL--------------------------------GNNKITD------ITVLSRLTKLD 159 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEEEC--------------------------------CSSCCCC------CGGGGGCTTCS
T ss_pred CCCc-CCCCh-hhcCCCCCCEEEc--------------------------------cCCcCCc------chhhccCCCCC
Confidence 8886 55543 4555555555533 2111000 12344566777
Q ss_pred eEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeecccc
Q 048135 682 ELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMT 737 (1189)
Q Consensus 682 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~ 737 (1189)
.|++++|.+..++. +. .+++|+.|++++|. +..++.+..+++|+.|+++++.
T Consensus 160 ~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 160 TLSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred EEEccCCccccchh-hc--CCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 77777777777665 33 47888888888875 4456778888888888888753
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=1.3e-12 Score=144.63 Aligned_cols=171 Identities=22% Similarity=0.233 Sum_probs=122.0
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
+..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .+.++++|++|++++| .+..+|. +..+++|++|
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEE
Confidence 5567788888888888877766 778888888888888887776 5778888888888887 5666665 7788888888
Q ss_pred cccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCC
Q 048135 600 DITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTS 679 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 679 (1189)
++++|. +..+|. ++.+++|+.|+...+ .+..... +..+++|+.|+++.+.-.. ...+..+++
T Consensus 135 ~l~~n~-l~~~~~-l~~l~~L~~L~l~~n--------~l~~~~~--l~~l~~L~~L~l~~n~l~~------~~~l~~l~~ 196 (308)
T 1h6u_A 135 YLDLNQ-ITNISP-LAGLTNLQYLSIGNA--------QVSDLTP--LANLSKLTTLKADDNKISD------ISPLASLPN 196 (308)
T ss_dssp ECCSSC-CCCCGG-GGGCTTCCEEECCSS--------CCCCCGG--GTTCTTCCEEECCSSCCCC------CGGGGGCTT
T ss_pred ECCCCc-cCcCcc-ccCCCCccEEEccCC--------cCCCChh--hcCCCCCCEEECCCCccCc------ChhhcCCCC
Confidence 888776 555654 777777777754222 1122111 6677788888887543211 112567789
Q ss_pred cceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCC
Q 048135 680 LKELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTN 715 (1189)
Q Consensus 680 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~ 715 (1189)
|+.|++++|....+|. +. .+++|+.|++++|..
T Consensus 197 L~~L~L~~N~l~~~~~-l~--~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 197 LIEVHLKNNQISDVSP-LA--NTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCEEECTTSCCCBCGG-GT--TCTTCCEEEEEEEEE
T ss_pred CCEEEccCCccCcccc-cc--CCCCCCEEEccCCee
Confidence 9999999998888775 33 588999999998853
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=9.1e-13 Score=146.29 Aligned_cols=204 Identities=14% Similarity=0.096 Sum_probs=141.1
Q ss_pred CCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCC----CCCCCCCccceEeecc
Q 048135 950 LLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMP----ESPINLECLHQIYIWD 1025 (1189)
Q Consensus 950 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp----~~~~~l~~L~~L~l~~ 1025 (1189)
..++|++|++++|......+.... . ..+++|+.|++++|......+ ..+..+++|++|++++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~-------------~-~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~ 154 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPL-------------E-ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ 154 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSS-------------S-CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC
T ss_pred ccCceeEEEeeCCEeccchhhhhh-------------h-ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC
Confidence 357799999988754444432110 0 457788888888887665544 2334688899999988
Q ss_pred CCCCcccCCCC--CCCCcCeEEEeccCCCcc--cc--ccccCCCccccccccCCCCCcceeeccCCCcccccc---cCCC
Q 048135 1026 CSSFTSFPKGG--LPNTLSRISIGKCENLVA--LP--DRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIE---WGLH 1096 (1189)
Q Consensus 1026 ~~~l~~~p~~~--~~~~L~~L~l~~c~~l~~--lp--~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~---~~l~ 1096 (1189)
|. +..++... .+++|++|++++|...+. ++ ..+..+++|++|++ ++ +.++.++. ..+.
T Consensus 155 n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L-----------s~-N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 155 AH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL-----------RN-TGMETPTGVCAALAA 221 (310)
T ss_dssp CS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC-----------CS-SCCCCHHHHHHHHHH
T ss_pred CC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC-----------CC-CCCCchHHHHHHHHh
Confidence 84 45555432 455899999988654432 32 22356667777766 43 44554332 1246
Q ss_pred CCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCCCCCCCCc
Q 048135 1097 KLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPEVGLPSSL 1176 (1189)
Q Consensus 1097 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL 1176 (1189)
.+++|++|++++|......|.....+..+++|++|++++| .++.+| ..+. ++|+.|++++| .+..+|....+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVP-KGLP--AKLRVLDLSSN-RLNRAPQPDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCC-SCCC--SCCSCEECCSC-CCCSCCCTTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchh-hhhc--CCCCEEECCCC-cCCCCchhhhCCCc
Confidence 7899999999997654445766544444589999999998 677898 5554 89999999995 77888776677999
Q ss_pred ceeeecCCC
Q 048135 1177 LQLYIDGCP 1185 (1189)
Q Consensus 1177 ~~L~i~~c~ 1185 (1189)
+.|++++++
T Consensus 297 ~~L~L~~N~ 305 (310)
T 4glp_A 297 DNLTLDGNP 305 (310)
T ss_dssp SCEECSSTT
T ss_pred cEEECcCCC
Confidence 999999986
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.39 E-value=1.5e-12 Score=141.50 Aligned_cols=176 Identities=18% Similarity=0.175 Sum_probs=87.4
Q ss_pred cCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCc
Q 048135 900 VCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTS 979 (1189)
Q Consensus 900 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 979 (1189)
...+++|+.|++++| .++.++. ...+++|++|++++|. +..++....+++|+.|++++|. ++.++..
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~-------- 103 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPNG-------- 103 (272)
T ss_dssp HHHHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCTT--------
T ss_pred cccccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccChh--------
Confidence 345778889998886 4555553 2367888888888765 3444444445667777777652 3322211
Q ss_pred cchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCC--CCCCCcCeEEEeccCCCccccc
Q 048135 980 TSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKG--GLPNTLSRISIGKCENLVALPD 1057 (1189)
Q Consensus 980 ~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~--~~~~~L~~L~l~~c~~l~~lp~ 1057 (1189)
.+.++++|+.|++++|......+..+..+++|++|++++| .++.++.. ..+++|+.|++++| .++.+|.
T Consensus 104 -------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 174 (272)
T 3rfs_A 104 -------VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPE 174 (272)
T ss_dssp -------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred -------HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCH
Confidence 1233445555555555443333333445555555555554 33344332 12335555555553 2333322
Q ss_pred -cccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEccc
Q 048135 1058 -RMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGC 1109 (1189)
Q Consensus 1058 -~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c 1109 (1189)
.+..+++|++|++ ..+.+..+++..+..+++|+.|++++|
T Consensus 175 ~~~~~l~~L~~L~L------------~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 175 GVFDKLTQLKDLRL------------YQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTTTTCTTCCEEEC------------CSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred HHhcCCccCCEEEC------------CCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 2334444444444 223344444434444555555555554
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=6.3e-12 Score=134.65 Aligned_cols=170 Identities=19% Similarity=0.223 Sum_probs=93.3
Q ss_pred cceEEEeccCCCcccCccccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccCc-hhhhccccCCccccc
Q 048135 525 KLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKWP-SKVMNLINLRHLDIT 602 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 602 (1189)
..++++++++.++.+|..+. .+|++|+|++|.+..++. .++++++|++|++++| .+..++ ..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 35566666666666666554 466666666666666533 4666666666666666 344443 335666666666666
Q ss_pred CCcccccCCC-CCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcc
Q 048135 603 DVHLIKEMPL-GMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLK 681 (1189)
Q Consensus 603 ~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~ 681 (1189)
+|. +..+|. .++.+++|++|+.... ++..+ ....+..+++|+
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N----------------------~l~~~--------------~~~~~~~l~~L~ 134 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGN----------------------QLKSL--------------PSGVFDRLTKLK 134 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSS----------------------CCCCC--------------CTTTTTTCTTCC
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCC----------------------cCCCc--------------ChhHhccCCccc
Confidence 665 444442 2445555554432110 00000 001123445566
Q ss_pred eEEEeeeCCCCCCC-CCCCCCCCceeEEEecCCCCCCCCC-CCCcccCcceEeeccc
Q 048135 682 ELTIKCYGGTRFPS-WVGDPSFSNIVMITLESCTNCRSLP-SLGLLCSLKALTIREM 736 (1189)
Q Consensus 682 ~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~ 736 (1189)
.|++++|.+..+|. .+. .+++|+.|++++|......+ .+..+++|+.|+++++
T Consensus 135 ~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 66666666666654 232 36677777777765432222 4666777777777665
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=1.4e-12 Score=156.78 Aligned_cols=169 Identities=15% Similarity=0.187 Sum_probs=114.9
Q ss_pred cCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCccc
Q 048135 521 PKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLD 600 (1189)
Q Consensus 521 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 600 (1189)
..+++|+.|++++|.+..+| .++.+++|++|+|++|.+..+|. ++++++|++|+|++| .+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 34567778888888877776 47778888888888888887776 778888888888887 566665 577788888888
Q ss_pred ccCCcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCc
Q 048135 601 ITDVHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSL 680 (1189)
Q Consensus 601 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L 680 (1189)
+++|. +..+| .+..+++|+.|++ +.+.-.. +..+..+++|
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L~L--------------------------------s~N~l~~------l~~l~~l~~L 155 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESLYL--------------------------------GNNKITD------ITVLSRLTKL 155 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEEEC--------------------------------CSSCCCC------CGGGGSCTTC
T ss_pred ecCCC-CCCCc-cccCCCccCEEEC--------------------------------CCCccCC------chhhcccCCC
Confidence 88776 44443 3555555555532 2111000 1234456677
Q ss_pred ceEEEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeecccc
Q 048135 681 KELTIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMT 737 (1189)
Q Consensus 681 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~ 737 (1189)
+.|++++|.+..++. +. .+++|+.|+|++|. +..+|.+..+++|+.|+|+++.
T Consensus 156 ~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 156 DTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred CEEECcCCcCCCchh-hc--cCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 777777777766655 33 47888888888875 3456778888888888888754
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=1.5e-12 Score=133.72 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=67.3
Q ss_pred CCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccc
Q 048135 522 KFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDI 601 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 601 (1189)
.+++|+.|++++|.+..+| .+..+++|++|++++|.+..+| .+..+++|++|++++|......|..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4457888888888888777 6778888888888888776655 5777888888888887433345667777888888888
Q ss_pred cCCcccccCCCCCCCCCCCce
Q 048135 602 TDVHLIKEMPLGMEEWKCLQT 622 (1189)
Q Consensus 602 ~~~~~~~~~p~~i~~L~~L~~ 622 (1189)
++|......|..++.+++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCE
T ss_pred cCCccCcHhHHHHhhCCCCCE
Confidence 777632223333333333333
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.33 E-value=7.3e-14 Score=160.75 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=53.8
Q ss_pred hhhcCCCcceEEEeccCCCcc-----cCccccCcccccEEeccccccc----cccccc-------cCCCCCcEEeccCcc
Q 048135 518 DLLPKFKKLRVLSLKSYHIIE-----LPNSIGRLMHLRYLDMSNTAIS----SLPEST-------CSLINLQTLLLRRCF 581 (1189)
Q Consensus 518 ~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~----~LP~~i-------~~L~~L~~L~L~~~~ 581 (1189)
..+..+++|++|+|++|.+.. ++..+.++++|++|+|++|.+. .+|..+ .++++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 344556667777777776653 3344566777777777765443 223333 566777777777763
Q ss_pred cccc-----CchhhhccccCCcccccCCc
Q 048135 582 YLMK-----WPSKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 582 ~l~~-----lp~~i~~L~~L~~L~l~~~~ 605 (1189)
+.. +|..+.++++|++|++++|.
T Consensus 106 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 106 -FGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp -CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred -CCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 333 56666777777777777765
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.33 E-value=1.2e-11 Score=132.43 Aligned_cols=176 Identities=19% Similarity=0.142 Sum_probs=78.8
Q ss_pred ccceEEEccCCCcccccccCCCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCC
Q 048135 930 CLECLLIEGCNSLKFVVKGQLLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMP 1009 (1189)
Q Consensus 930 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp 1009 (1189)
+.+.++++++ .++.+|. ..+++++.|+++++. +..++. -.+.++++|+.|++++|......+
T Consensus 15 ~~~~l~~~~~-~l~~~p~-~~~~~l~~L~L~~n~-l~~~~~---------------~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPS-GIPADTEKLDLQSTG-LATLSD---------------ATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp GGTEEECTTC-CCSSCCS-CCCTTCCEEECTTSC-CCCCCT---------------TTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCeEEecCCC-CccccCC-CCCCCCCEEEccCCC-cCccCH---------------hHhcCcccCCEEECCCCcCCccCH
Confidence 4556666653 3455553 356667777776643 222211 112234444444444444333333
Q ss_pred CCCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCccc
Q 048135 1010 ESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKP 1089 (1189)
Q Consensus 1010 ~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~ 1089 (1189)
..+..+++|++|++++| .++.+|. ..+..+++|++|++ +.+.++.
T Consensus 77 ~~~~~l~~L~~L~L~~n-~l~~~~~----------------------~~~~~l~~L~~L~L------------~~N~l~~ 121 (251)
T 3m19_A 77 GVFDDLTELGTLGLANN-QLASLPL----------------------GVFDHLTQLDKLYL------------GGNQLKS 121 (251)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCCCT----------------------TTTTTCTTCCEEEC------------CSSCCCC
T ss_pred hHhccCCcCCEEECCCC-cccccCh----------------------hHhcccCCCCEEEc------------CCCcCCC
Confidence 33444444444444444 2333332 22334444444444 2333444
Q ss_pred ccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCC
Q 048135 1090 LIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCP 1162 (1189)
Q Consensus 1090 l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 1162 (1189)
+++..+..+++|++|++++| .+..+|... +..+++|+.|++++| .+..++...+..+++|+.|++++|+
T Consensus 122 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 122 LPSGVFDRLTKLKELRLNTN-QLQSIPAGA--FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cChhHhccCCcccEEECcCC-cCCccCHHH--cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 44444444555555555553 333443321 133445555555554 3344443344555555555555543
No 100
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.32 E-value=7.4e-12 Score=145.60 Aligned_cols=268 Identities=14% Similarity=0.043 Sum_probs=159.0
Q ss_pred CeE--EccCCCcHHHHHHHHhcCcccc----CcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCC-CCChhHHHHHHHHH
Q 048135 142 PTL--VGMGGIGKTTLARLVYNDKEVE----GFN-PKAWVCVSEDFDVLKITKAILESVTSSPSN-LKDLNQVQIQLEKA 213 (1189)
Q Consensus 142 ~~I--~G~gG~GKTtla~~v~~~~~~~----~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~ 213 (1189)
+.| +|++|+||||||+++++..... +|+ .++|+.+....+...++..++.+++..... ..+..++...+.+.
T Consensus 53 ~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 132 (412)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDN 132 (412)
T ss_dssp EEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHH
T ss_pred EEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 446 9999999999999998753321 122 256777667778889999999988654321 23445566667776
Q ss_pred Hc--cCceEEEecCCCCC------ChhhHHhhccccCCC---C--CCcEEEEEcCCchhhhccC---------CCceEeC
Q 048135 214 IA--GQKFLIVLDNVWSK------NYGLWKTLKSPFMAG---T--PGSKIIVTTRSVDVALTLG---------PIDYYNL 271 (1189)
Q Consensus 214 l~--~~~~LlvlDdv~~~------~~~~~~~l~~~l~~~---~--~gs~iivTtr~~~v~~~~~---------~~~~~~l 271 (1189)
+. +++++||+||+|.- ..+.+..+...+... + ....||+||+..++..... ....+++
T Consensus 133 l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l 212 (412)
T 1w5s_A 133 LYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHL 212 (412)
T ss_dssp HHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEEC
T ss_pred HHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeee
Confidence 64 67999999999662 123444433333211 2 3445888887665332111 1233999
Q ss_pred CCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhC------CChHHHHHHHhh-hc-----CCC--ChhHHHHHH
Q 048135 272 ELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCK------GLPQAAANLGGL-LC-----CKQ--RDDEWQGIL 337 (1189)
Q Consensus 272 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~------g~Plai~~~g~~-L~-----~~~--~~~~w~~~l 337 (1189)
++++.++++++|...+....... .--.+....|++.++ |.|..+..+... .. +.. ..+.+..+.
T Consensus 213 ~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 213 PAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 99999999999976542111100 011346778999999 999755544332 11 111 123333333
Q ss_pred hhhccCcCCCCChHHHHHHhHhcCchhHHHHHhHhccCC--CCceechHHHHHHHH--H-c--CCcccCccchhHHHHHH
Q 048135 338 KSRIWDLSEESDILPVLRLSYHHLPSHLKRCFSYSAIFP--KGYEFEEMELILLWM--A-D--GLIQQSEDNKQMEDLGH 410 (1189)
Q Consensus 338 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp--~~~~~~~~~li~~wi--a-~--g~i~~~~~~~~~~~~~~ 410 (1189)
..... ...+.-.++.||++.+.++..+|.+. .+..++...+...|. + . |. .. .......
T Consensus 291 ~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~ 356 (412)
T 1w5s_A 291 SENEA--------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KP-----RGYTQYH 356 (412)
T ss_dssp HHC--------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CC-----CCHHHHH
T ss_pred HHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CC-----CCHHHHH
Confidence 32110 12334456889999999999998764 233455555544332 2 1 21 00 0123356
Q ss_pred HHHHHHHhccccccc
Q 048135 411 KYFRDLLSRSIFQKS 425 (1189)
Q Consensus 411 ~~~~~L~~~~ll~~~ 425 (1189)
.++++|.+.+++...
T Consensus 357 ~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 357 IYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCEEee
Confidence 789999999999764
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.31 E-value=3.8e-13 Score=151.77 Aligned_cols=182 Identities=14% Similarity=0.130 Sum_probs=127.8
Q ss_pred hcCCCcceEEEeccCCCcc--cCccccCcccccEEeccccccc-cccccccCCCCCcEEeccCccccc--cCchhhhccc
Q 048135 520 LPKFKKLRVLSLKSYHIIE--LPNSIGRLMHLRYLDMSNTAIS-SLPESTCSLINLQTLLLRRCFYLM--KWPSKVMNLI 594 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~L~~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~ 594 (1189)
+..+++|++|++++|.+.. +|..+..+++|++|++++|.+. ..|..++++++|++|++++|..+. .+|..+.+++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 4468999999999999874 7888999999999999999988 568889999999999999996666 3777789999
Q ss_pred cCCcccccCCccccc--CCCCCCCCC-CCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHh
Q 048135 595 NLRHLDITDVHLIKE--MPLGMEEWK-CLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVL 671 (1189)
Q Consensus 595 ~L~~L~l~~~~~~~~--~p~~i~~L~-~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 671 (1189)
+|++|++++|..+.. +|..+..++ +|++| +++++.. .-......
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L--------------------------------~l~~~~~-~~~~~~l~ 215 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQL--------------------------------NLSGYRK-NLQKSDLS 215 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE--------------------------------ECCSCGG-GSCHHHHH
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEE--------------------------------EeCCCcc-cCCHHHHH
Confidence 999999999932442 344455555 55555 3332210 00012222
Q ss_pred ccCCCCCCcceEEEeeeC-CC-CCCCCCCCCCCCceeEEEecCCCCCC--CCCCCCcccCcceEeeccc
Q 048135 672 GMLKSHTSLKELTIKCYG-GT-RFPSWVGDPSFSNIVMITLESCTNCR--SLPSLGLLCSLKALTIREM 736 (1189)
Q Consensus 672 ~~l~~~~~L~~L~l~~~~-~~-~~p~~~~~~~~~~L~~L~l~~~~~~~--~lp~l~~l~~L~~L~L~~~ 736 (1189)
..+..+++|+.|+++++. .+ ..+..+. .+++|+.|++++|.... .+..++.+++|+.|++++|
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFF--QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHh--CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 333445677777777666 22 3344443 46888888888885321 2224677888999999876
No 102
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.28 E-value=7.2e-11 Score=133.87 Aligned_cols=267 Identities=13% Similarity=0.106 Sum_probs=157.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc------CHHHHHHHHHHHccC---------------C-CC
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF------DVLKITKAILESVTS---------------S-PS 198 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~~l~~---------------~-~~ 198 (1189)
.+.|+|++|+|||||+++++++. + .+|+.+.... +...+...+...+.. . ..
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNER-----P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTL 106 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS-----S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTS
T ss_pred eEEEECCCcCCHHHHHHHHHHHc-----C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceee
Confidence 34599999999999999998742 2 6677664332 556666666665432 0 00
Q ss_pred --CCCChhHHHHHHHHHHcc-CceEEEecCCCCCC-------hhhHHhhccccCCCCCCcEEEEEcCCchhhhc------
Q 048135 199 --NLKDLNQVQIQLEKAIAG-QKFLIVLDNVWSKN-------YGLWKTLKSPFMAGTPGSKIIVTTRSVDVALT------ 262 (1189)
Q Consensus 199 --~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------ 262 (1189)
...+..++...+.+..+. ++++||+||++.-+ .+.+..+...... .++.++|+|++...+...
T Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~ 185 (350)
T 2qen_A 107 EPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITD 185 (350)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTC
T ss_pred ccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcC
Confidence 113455566666665543 49999999996532 1233334332222 247789999887543111
Q ss_pred -----cCC-CceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHH-H
Q 048135 263 -----LGP-IDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRDDEWQ-G 335 (1189)
Q Consensus 263 -----~~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~~~w~-~ 335 (1189)
.+. ...+++.+|+.+|+.+++.... ........ .+.+.+|++.++|+|+++..++..+........+. .
T Consensus 186 ~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~ 261 (350)
T 2qen_A 186 YESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKR 261 (350)
T ss_dssp TTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHH
Confidence 111 2479999999999999998753 21111111 34578999999999999999987653221221121 1
Q ss_pred HHhhhccCcCCCCChHHHHHHhHhcC---chhHHHHHhHhccCCCCceechHHHHHHHHHcCCcccCccchhHHHHHHHH
Q 048135 336 ILKSRIWDLSEESDILPVLRLSYHHL---PSHLKRCFSYSAIFPKGYEFEEMELILLWMADGLIQQSEDNKQMEDLGHKY 412 (1189)
Q Consensus 336 ~l~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~ 412 (1189)
+.+. +...+.-.+..+ ++..+..+..+|+ + ..+...+.....+. ... . .......+
T Consensus 262 ~~~~----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~-~~~-----~-~~~~~~~~ 320 (350)
T 2qen_A 262 TLEV----------AKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVK-GTK-----I-PEPRLYAL 320 (350)
T ss_dssp HHHH----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHT-TCC-----C-CHHHHHHH
T ss_pred HHHH----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHH-hCC-----C-CHHHHHHH
Confidence 1111 111111112222 7888999999998 2 23444444432221 100 0 12345678
Q ss_pred HHHHHhccccccccCCCCceEe-ChhHHHHH
Q 048135 413 FRDLLSRSIFQKSCNNSSKFLM-HDLVNDLA 442 (1189)
Q Consensus 413 ~~~L~~~~ll~~~~~~~~~~~m-Hdlv~d~~ 442 (1189)
++.|.+.+++.... ..|.+ |++++++.
T Consensus 321 l~~L~~~gli~~~~---~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 321 LENLKKMNWIVEED---NTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHTTSEEEET---TEEEESSHHHHHHH
T ss_pred HHHHHhCCCEEecC---CEEEEecHHHHHHH
Confidence 99999999998652 34554 67777764
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=3.4e-13 Score=155.19 Aligned_cols=241 Identities=15% Similarity=0.072 Sum_probs=133.2
Q ss_pred cCCCCcceEEecCccCCCcccccchhhhhhhhhcCCCcceEEEeccCCCcc----cCccc-------cCcccccEEeccc
Q 048135 488 FPEVECLRTFLPMLKGDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHIIE----LPNSI-------GRLMHLRYLDMSN 556 (1189)
Q Consensus 488 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~----lp~~i-------~~l~~L~~L~L~~ 556 (1189)
+..++.|+.|....+.. .......+...+..+++|++|+|++|.+.. +|..+ .++++|++|+|++
T Consensus 28 l~~~~~L~~L~L~~n~i----~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTI----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp HHHCSCCCEEECTTSEE----CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HhcCCCccEEECCCCCC----CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33456677776554321 011112234557789999999999986553 34444 7889999999999
Q ss_pred ccccc-----ccccccCCCCCcEEeccCccccc-----cCchhhhcc---------ccCCcccccCCccc-ccCC---CC
Q 048135 557 TAISS-----LPESTCSLINLQTLLLRRCFYLM-----KWPSKVMNL---------INLRHLDITDVHLI-KEMP---LG 613 (1189)
Q Consensus 557 ~~i~~-----LP~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L---------~~L~~L~l~~~~~~-~~~p---~~ 613 (1189)
|.+.. +|..+.++++|++|+|++|. +. .++..+..+ ++|++|++++|... ..+| ..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 98886 78889999999999999984 33 233445555 89999999998732 2333 34
Q ss_pred CCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEEEeeeCCCCC
Q 048135 614 MEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELTIKCYGGTRF 693 (1189)
Q Consensus 614 i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 693 (1189)
+..+++|++|....+.. ... .........+..+++|+.|+|+++.-...........+..+++|+.|++++|.+...
T Consensus 183 l~~~~~L~~L~L~~n~l--~~~-g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGI--RPE-GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHCTTCCEEECCSSCC--CHH-HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHhCCCcCEEECcCCCC--CHh-HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 55566666664322110 000 000011113445566666666543211100122333445555666666665554331
Q ss_pred -----CCCCCCCCCCceeEEEecCCCCCC----CCC-CC-CcccCcceEeeccc
Q 048135 694 -----PSWVGDPSFSNIVMITLESCTNCR----SLP-SL-GLLCSLKALTIREM 736 (1189)
Q Consensus 694 -----p~~~~~~~~~~L~~L~l~~~~~~~----~lp-~l-~~l~~L~~L~L~~~ 736 (1189)
|.++....+++|+.|++++|.... .+| .+ .++++|+.|+++++
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 232211124556666666554332 233 22 33555556655554
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=2.3e-12 Score=138.66 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=95.7
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccC
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITD 603 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 603 (1189)
..+..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++| .+..+|. +.++++|++|++++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 34555556666666665 4566666666666666666666 4666666666666666 4555655 66666666666666
Q ss_pred CcccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcceE
Q 048135 604 VHLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKEL 683 (1189)
Q Consensus 604 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L 683 (1189)
|. +..+|.... ++|++|+ ++.+.-. .++.+..+++|+.|
T Consensus 95 N~-l~~l~~~~~--~~L~~L~--------------------------------L~~N~l~------~~~~l~~l~~L~~L 133 (263)
T 1xeu_A 95 NR-LKNLNGIPS--ACLSRLF--------------------------------LDNNELR------DTDSLIHLKNLEIL 133 (263)
T ss_dssp SC-CSCCTTCCC--SSCCEEE--------------------------------CCSSCCS------BSGGGTTCTTCCEE
T ss_pred Cc-cCCcCcccc--CcccEEE--------------------------------ccCCccC------CChhhcCcccccEE
Confidence 65 444443211 3333332 2111000 01123445566666
Q ss_pred EEeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeecccc
Q 048135 684 TIKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREMT 737 (1189)
Q Consensus 684 ~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~~ 737 (1189)
++++|.++.+|. +. .+++|+.|++++|... .++.+..+++|+.|+++++.
T Consensus 134 ~Ls~N~i~~~~~-l~--~l~~L~~L~L~~N~i~-~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 134 SIRNNKLKSIVM-LG--FLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECTTSCCCBCGG-GG--GCTTCCEEECTTSCCC-BCTTSTTCCCCCEEEEEEEE
T ss_pred ECCCCcCCCChH-Hc--cCCCCCEEECCCCcCc-chHHhccCCCCCEEeCCCCc
Confidence 666666666652 32 4677888888877543 33667788888888887753
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=1.1e-11 Score=127.25 Aligned_cols=148 Identities=14% Similarity=0.068 Sum_probs=70.1
Q ss_pred CCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCcccccccc
Q 048135 992 RSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEIC 1071 (1189)
Q Consensus 992 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 1071 (1189)
++|+.|++++|.. +.+| ++..+++|++|++++| .++.++....+++|++|++++|......|..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L- 119 (197)
T 4ezg_A 44 NSLTYITLANINV-TDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI- 119 (197)
T ss_dssp HTCCEEEEESSCC-SCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC-
T ss_pred CCccEEeccCCCc-cChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe-
Confidence 3444444444322 2344 4555566666666665 4444443333445666666654332223444444444444444
Q ss_pred CCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCC
Q 048135 1072 FPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLT 1151 (1189)
Q Consensus 1072 ~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~ 1151 (1189)
+.+.++...+..+..+++|++|++++|..+..+|. . ..+++|+.|++++| .+..++ .+..++
T Consensus 120 -----------s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l---~~l~~L~~L~l~~n-~i~~~~--~l~~l~ 181 (197)
T 4ezg_A 120 -----------SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L---KTLPELKSLNIQFD-GVHDYR--GIEDFP 181 (197)
T ss_dssp -----------CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-G---GGCSSCCEEECTTB-CCCCCT--TGGGCS
T ss_pred -----------cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-h---cCCCCCCEEECCCC-CCcChH--HhccCC
Confidence 22333332222345555555555555544454442 1 34455555555555 334443 345555
Q ss_pred ccCceeeccC
Q 048135 1152 SLDLLRIRNC 1161 (1189)
Q Consensus 1152 ~L~~L~l~~c 1161 (1189)
+|++|++++|
T Consensus 182 ~L~~L~l~~N 191 (197)
T 4ezg_A 182 KLNQLYAFSQ 191 (197)
T ss_dssp SCCEEEECBC
T ss_pred CCCEEEeeCc
Confidence 5555555553
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=2.9e-11 Score=143.53 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=110.7
Q ss_pred cceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCC
Q 048135 525 KLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDV 604 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 604 (1189)
+|++|++++|.++.+|..+. ++|++|+|++|.|+.+| +.+++|++|++++| .+..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 78888888888888887663 68888888888888888 45788888888887 5677887 655 8888888888
Q ss_pred cccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEE
Q 048135 605 HLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELT 684 (1189)
Q Consensus 605 ~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~ 684 (1189)
. +..+|. .+++|+.|+...+. + ..+.. .+++|+.|+++++.-.. +.. +. ++|+.|+
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N~--l---~~lp~-------~l~~L~~L~Ls~N~L~~-----lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNNQ--L---TMLPE-------LPTSLEVLSVRNNQLTF-----LPE-LP--ESLEALD 186 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSSC--C---SCCCC-------CCTTCCEEECCSSCCSC-----CCC-CC--TTCCEEE
T ss_pred c-CCCCCC---cCccccEEeCCCCc--c---CcCCC-------cCCCcCEEECCCCCCCC-----cch-hh--CCCCEEE
Confidence 7 666776 56777777542211 1 11110 23456666665432111 111 22 5677777
Q ss_pred EeeeCCCCCCCCCCCCCCCce-------eEEEecCCCCCCCCC-CCCcccCcceEeeccccC
Q 048135 685 IKCYGGTRFPSWVGDPSFSNI-------VMITLESCTNCRSLP-SLGLLCSLKALTIREMTE 738 (1189)
Q Consensus 685 l~~~~~~~~p~~~~~~~~~~L-------~~L~l~~~~~~~~lp-~l~~l~~L~~L~L~~~~~ 738 (1189)
+++|.++.+|. +.. +| +.|++++|.. ..+| .+..+++|+.|+++++..
T Consensus 187 Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 187 VSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCSSCCSSCCC-CC------------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSC
T ss_pred CcCCCCCchhh-HHH----hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcC
Confidence 77776666666 321 44 6677766643 3455 355566677777766543
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=3e-11 Score=125.21 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=36.1
Q ss_pred EEEeccCCCcccCccccCcccccEEecccccccccccc-ccCCCCCcEEeccCccccccCchh-hhccccCCcccccCCc
Q 048135 528 VLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPES-TCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLDITDVH 605 (1189)
Q Consensus 528 ~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 605 (1189)
.++.+++.++.+|..+ ..+|++|++++|.++.+|.. ++++++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 3444444455554433 23555555555555554433 345555555555554 34444432 3455555555555544
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=5.7e-11 Score=123.92 Aligned_cols=93 Identities=18% Similarity=0.309 Sum_probs=54.7
Q ss_pred eEEEeccCCCcccCccccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccC-chhhhccccCCcccccCC
Q 048135 527 RVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKW-PSKVMNLINLRHLDITDV 604 (1189)
Q Consensus 527 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 604 (1189)
+.++++++.++.+|..+. .+|++|++++|.|+.+|. .+..+++|++|+|++| .+..+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666666666666553 466666666666666654 4666666666666666 33333 556666666666666666
Q ss_pred cccccCCCC-CCCCCCCcee
Q 048135 605 HLIKEMPLG-MEEWKCLQTL 623 (1189)
Q Consensus 605 ~~~~~~p~~-i~~L~~L~~L 623 (1189)
. +..+|.+ +..+++|++|
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEE
T ss_pred c-CCccCHhHccCCCCCCEE
Confidence 5 4455543 2334433333
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=6.2e-11 Score=140.68 Aligned_cols=181 Identities=22% Similarity=0.270 Sum_probs=104.6
Q ss_pred CCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCCCcceEEeec
Q 048135 882 SPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLLPLKKLQIRK 961 (1189)
Q Consensus 882 ~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 961 (1189)
+|+.|++++|. ++.+|.. .+++|++|++++| .++.+| . .+++|+.|++++|. ++.+|. +..+|+.|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~-l~~~L~~L~Ls~N-~l~~ip-~---~l~~L~~L~Ls~N~-l~~ip~--l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDN-LPPQITVLEITQN-ALISLP-E---LPASLEYLDACDNR-LSTLPE--LPASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSC-CCTTCSEEECCSS-CCSCCC-C---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHh-HcCCCCEEECcCC-CCcccc-c---ccCCCCEEEccCCC-CCCcch--hhcCCCEEECCC
Confidence 67777777653 4445432 2466677776664 455555 1 34556666666542 333333 222455555544
Q ss_pred ccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCCCCCc
Q 048135 962 CEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGLPNTL 1041 (1189)
Q Consensus 962 c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L 1041 (1189)
| .. +.+|. .+++|+.|++++| .++.+|. .+++|
T Consensus 130 N----------------------------------------~l-~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L 162 (571)
T 3cvr_A 130 N----------------------------------------QL-TMLPE---LPALLEYINADNN-QLTMLPE--LPTSL 162 (571)
T ss_dssp S----------------------------------------CC-SCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTC
T ss_pred C----------------------------------------cC-CCCCC---cCccccEEeCCCC-ccCcCCC--cCCCc
Confidence 3 21 22444 4678888888887 4666765 55688
Q ss_pred CeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCCCcc-------ceEEEcccCCccc
Q 048135 1042 SRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTAL-------RNLSIGGCLDAVS 1114 (1189)
Q Consensus 1042 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L-------~~L~l~~c~~l~~ 1114 (1189)
+.|++++| .++.+|. +. ++|+.|++ + .|.++.++. +.. +| +.|++++| .+..
T Consensus 163 ~~L~Ls~N-~L~~lp~-l~--~~L~~L~L-----------s-~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~ 221 (571)
T 3cvr_A 163 EVLSVRNN-QLTFLPE-LP--ESLEALDV-----------S-TNLLESLPA--VPV--RNHHSEETEIFFRCREN-RITH 221 (571)
T ss_dssp CEEECCSS-CCSCCCC-CC--TTCCEEEC-----------C-SSCCSSCCC--CC----------CCEEEECCSS-CCCC
T ss_pred CEEECCCC-CCCCcch-hh--CCCCEEEC-----------c-CCCCCchhh--HHH--hhhcccccceEEecCCC-ccee
Confidence 88888884 4666765 43 55555555 3 445555554 332 55 77888774 5667
Q ss_pred CccccccCCCCCccceeecccCCCCcccC
Q 048135 1115 FPQEELGMMLPTSLTKLAIAKFPELKHLS 1143 (1189)
Q Consensus 1115 l~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 1143 (1189)
+|... ..+++|+.|++++|+..+.+|
T Consensus 222 lp~~l---~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 222 IPENI---LSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCGGG---GGSCTTEEEECCSSSCCHHHH
T ss_pred cCHHH---hcCCCCCEEEeeCCcCCCcCH
Confidence 77655 346777888887775545444
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=6.3e-12 Score=151.14 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=120.8
Q ss_pred cceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCC
Q 048135 525 KLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDV 604 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 604 (1189)
.+..+.+..+.+..++. +..|.+|++|++++|.|..+| .++.|++|++|+|++| .+..+|. +..+++|++|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC
Confidence 34555566666666543 578999999999999999998 5999999999999998 6778877 999999999999999
Q ss_pred cccccCCCCCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcceEE
Q 048135 605 HLIKEMPLGMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKELT 684 (1189)
Q Consensus 605 ~~~~~~p~~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~L~ 684 (1189)
. +..+| .+..+++|+.|++ +.+.-. .+..+..+++|+.|+
T Consensus 98 ~-l~~l~-~l~~l~~L~~L~L--------------------------------s~N~l~------~l~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 98 K-IKDLS-SLKDLKKLKSLSL--------------------------------EHNGIS------DINGLVHLPQLESLY 137 (605)
T ss_dssp C-CCCCT-TSTTCTTCCEEEC--------------------------------TTSCCC------CCGGGGGCTTCSEEE
T ss_pred C-CCCCh-hhccCCCCCEEEe--------------------------------cCCCCC------CCccccCCCccCEEE
Confidence 7 66655 5777777776643 111100 012355677888888
Q ss_pred EeeeCCCCCCCCCCCCCCCceeEEEecCCCCCCCCCCCCcccCcceEeeccc
Q 048135 685 IKCYGGTRFPSWVGDPSFSNIVMITLESCTNCRSLPSLGLLCSLKALTIREM 736 (1189)
Q Consensus 685 l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~lp~l~~l~~L~~L~L~~~ 736 (1189)
+++|.+..++. +. .+++|+.|+|++|... .++++..+++|+.|+|++|
T Consensus 138 Ls~N~l~~l~~-l~--~l~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 138 LGNNKITDITV-LS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 185 (605)
T ss_dssp CCSSCCCCCGG-GG--SCTTCSEEECCSSCCC-CCGGGTTCTTCCEEECCSS
T ss_pred CCCCccCCchh-hc--ccCCCCEEECcCCcCC-CchhhccCCCCCEEECcCC
Confidence 88888777643 32 4788888888888643 3444778888888888876
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=5.7e-11 Score=124.90 Aligned_cols=75 Identities=27% Similarity=0.316 Sum_probs=34.7
Q ss_pred EEEeccCCCcccCccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCchh-hhccccCCcccccCCc
Q 048135 528 VLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLDITDVH 605 (1189)
Q Consensus 528 ~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 605 (1189)
.++.+++.+..+|..+. .+|++|+|++|.|..+ |..+.++++|++|+|++| .+..+|.. +..+++|++|++++|.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc
Confidence 34444444444444332 4455555555554444 333444555555555544 33444432 3445555555554443
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.20 E-value=7.2e-11 Score=129.19 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=82.4
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
+..+++|++|++++|.++.++. ++++++|++|++++|.++.+|. ++.+++|++|++++| .+..+| .+..+++|++|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEE
Confidence 5678899999999999998877 8899999999999999988775 899999999999998 677774 58899999999
Q ss_pred cccCCcccccCCCCCCCCCCCceeCc
Q 048135 600 DITDVHLIKEMPLGMEEWKCLQTLSN 625 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~i~~L~~L~~L~~ 625 (1189)
++++|. +..+ ..++.+++|++|+.
T Consensus 140 ~l~~n~-l~~~-~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 140 YLGNNK-ITDI-TVLSRLTKLDTLSL 163 (291)
T ss_dssp ECCSSC-CCCC-GGGGGCTTCSEEEC
T ss_pred EccCCc-CCcc-hhhccCCCCCEEEc
Confidence 999887 5555 35666666666643
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=2.5e-12 Score=146.21 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=61.7
Q ss_pred hhhhhcCCCcceEEEeccCCCcccC-----ccccCcc-cccEEeccccccccc-cccccCC-----CCCcEEeccCcccc
Q 048135 516 LSDLLPKFKKLRVLSLKSYHIIELP-----NSIGRLM-HLRYLDMSNTAISSL-PESTCSL-----INLQTLLLRRCFYL 583 (1189)
Q Consensus 516 ~~~~~~~l~~Lr~L~L~~~~~~~lp-----~~i~~l~-~L~~L~L~~~~i~~L-P~~i~~L-----~~L~~L~L~~~~~l 583 (1189)
++.++...++|++|++++|.+...+ +.+.+++ +|++|+|++|.+... |..+..+ ++|++|++++|. +
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-C
Confidence 4455566666888888888887765 5667777 788888888887765 5555554 788888888874 4
Q ss_pred cc-Cchhhhc----c-ccCCcccccCCc
Q 048135 584 MK-WPSKVMN----L-INLRHLDITDVH 605 (1189)
Q Consensus 584 ~~-lp~~i~~----L-~~L~~L~l~~~~ 605 (1189)
.. .+..+.. + ++|++|++++|.
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 43 3343433 3 788888888776
No 114
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.19 E-value=3.8e-10 Score=128.33 Aligned_cols=268 Identities=14% Similarity=0.143 Sum_probs=151.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-----cCHHHHHHHHHHHccC-------------C------
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-----FDVLKITKAILESVTS-------------S------ 196 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~-------------~------ 196 (1189)
.+.|+|++|+|||||++++.+... . ..+|+.+... .+...+...+.+.+.. .
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~ 107 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN---L-PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVI 107 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---C-CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC---C-CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEe
Confidence 356999999999999999987532 1 2578876542 3444444444433210 0
Q ss_pred -CC---------CCCChhHHHHHHHHHHccCceEEEecCCCCCC----hhhHHhhccccCCCCCCcEEEEEcCCchhhhc
Q 048135 197 -PS---------NLKDLNQVQIQLEKAIAGQKFLIVLDNVWSKN----YGLWKTLKSPFMAGTPGSKIIVTTRSVDVALT 262 (1189)
Q Consensus 197 -~~---------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 262 (1189)
.. ......++...+.+.-+ ++++||+||++.-+ .+.+..+.... ...++.++|+|+|.......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~~g~~~~~l~~ 185 (357)
T 2fna_A 108 MGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAY-DNLKRIKFIMSGSEMGLLYD 185 (357)
T ss_dssp CSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHH-HHCTTEEEEEEESSHHHHHH
T ss_pred cceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHH-HcCCCeEEEEEcCchHHHHH
Confidence 00 01233444444433222 48999999995521 12233332222 11246789999997653211
Q ss_pred ----------c-CC-CceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCh
Q 048135 263 ----------L-GP-IDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCCKQRD 330 (1189)
Q Consensus 263 ----------~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~~~~~ 330 (1189)
. +. ...+++.+|+.+|+.+++...+-..+. .. +.. ..|++.++|+|+++..++..+......
T Consensus 186 ~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~ 259 (357)
T 2fna_A 186 YLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KDY----EVVYEKIGGIPGWLTYFGFIYLDNKNL 259 (357)
T ss_dssp HTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CCH----HHHHHHHCSCHHHHHHHHHHHHHHCCH
T ss_pred HHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-CcH----HHHHHHhCCCHHHHHHHHHHHccccch
Confidence 1 11 257899999999999999875321111 11 111 789999999999999998876433232
Q ss_pred hHHHH-HHhhhccCcCCCCChHHHHH-HhHh--cCchhHHHHHhHhccCCCCceechHHHHHHHH-HcCCcccCccchhH
Q 048135 331 DEWQG-ILKSRIWDLSEESDILPVLR-LSYH--HLPSHLKRCFSYSAIFPKGYEFEEMELILLWM-ADGLIQQSEDNKQM 405 (1189)
Q Consensus 331 ~~w~~-~l~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~~a~fp~~~~~~~~~li~~wi-a~g~i~~~~~~~~~ 405 (1189)
..|.. +.+... ..+...+. +.++ .+++..+..+..+|+ +. +...+....- ..|. . . .
T Consensus 260 ~~~~~~~~~~~~------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~--~----~-~ 321 (357)
T 2fna_A 260 DFAINQTLEYAK------KLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI--E----I-S 321 (357)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS--C----C-C
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC--C----C-C
Confidence 23321 111100 00111122 2222 688899999999998 22 4444332210 1121 0 0 1
Q ss_pred HHHHHHHHHHHHhccccccccCCCCceE-eChhHHHH
Q 048135 406 EDLGHKYFRDLLSRSIFQKSCNNSSKFL-MHDLVNDL 441 (1189)
Q Consensus 406 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~-mHdlv~d~ 441 (1189)
......+++.|.+.+++.... ..|. .|++++++
T Consensus 322 ~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 322 DSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 234567899999999998653 4566 57788775
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=4.8e-11 Score=128.29 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=76.3
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcc
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHL 599 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 599 (1189)
+..+++|++|++++|.++.+| .++.+++|++|+|++|.|+.+|. ++++++|++|++++| .+..+|.. .. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-CcccEE
Confidence 456678888888888888887 68888888888888888888877 888888888888887 67777653 33 888888
Q ss_pred cccCCcccccCCCCCCCCCCCceeCc
Q 048135 600 DITDVHLIKEMPLGMEEWKCLQTLSN 625 (1189)
Q Consensus 600 ~l~~~~~~~~~p~~i~~L~~L~~L~~ 625 (1189)
++++|. +..+| .++.+++|+.|+.
T Consensus 112 ~L~~N~-l~~~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 112 FLDNNE-LRDTD-SLIHLKNLEILSI 135 (263)
T ss_dssp ECCSSC-CSBSG-GGTTCTTCCEEEC
T ss_pred EccCCc-cCCCh-hhcCcccccEEEC
Confidence 888886 66654 4667777776643
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=1.5e-10 Score=121.73 Aligned_cols=138 Identities=24% Similarity=0.288 Sum_probs=79.8
Q ss_pred cccCCCCCCCCCccceEeeccCCCCcccCCC--CCCCCcCeEEEeccCCCccccc-cccCCCccccccccCCCCCcceee
Q 048135 1005 RKSMPESPINLECLHQIYIWDCSSFTSFPKG--GLPNTLSRISIGKCENLVALPD-RMHNLSSLQELEICFPTSLTTLTI 1081 (1189)
Q Consensus 1005 ~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~--~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~L~~L~l 1081 (1189)
++.+|..+. ++|+.|++++|. +..++.. ..+++|++|++++| .++.+|. .+..+++|+.|++
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~L----------- 95 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDL----------- 95 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC-----------
T ss_pred cCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEEC-----------
Confidence 455555442 666777776663 4444322 22346677777663 3455543 3455555555555
Q ss_pred ccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccC
Q 048135 1082 EDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNC 1161 (1189)
Q Consensus 1082 ~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c 1161 (1189)
+.|.++.+++..+..+++|++|++++| .+..+|... ..+++|+.|++++| .+..+|...+..+++|+.|++++|
T Consensus 96 -s~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 96 -GTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGI---ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp -CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTG---GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred -CCCcCCccChhHhCcchhhCeEeccCC-cccccCccc---ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 344555565555666677777777664 455666544 45566777777666 555665455666667777777665
Q ss_pred CC
Q 048135 1162 PK 1163 (1189)
Q Consensus 1162 ~~ 1163 (1189)
+.
T Consensus 170 ~~ 171 (229)
T 3e6j_A 170 PW 171 (229)
T ss_dssp CB
T ss_pred Cc
Confidence 53
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=4.1e-11 Score=119.38 Aligned_cols=100 Identities=20% Similarity=0.326 Sum_probs=81.6
Q ss_pred CCCcceEEEeccCCCc--ccCccccCcccccEEeccccccccccccccCCCCCcEEeccCcccccc-CchhhhccccCCc
Q 048135 522 KFKKLRVLSLKSYHII--ELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMK-WPSKVMNLINLRH 598 (1189)
Q Consensus 522 ~l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~ 598 (1189)
..++|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|. +.. +|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCE
Confidence 3478999999999998 8888889999999999999999888 778999999999999984 555 7877788999999
Q ss_pred ccccCCcccccCC--CCCCCCCCCceeC
Q 048135 599 LDITDVHLIKEMP--LGMEEWKCLQTLS 624 (1189)
Q Consensus 599 L~l~~~~~~~~~p--~~i~~L~~L~~L~ 624 (1189)
|++++|. +..+| ..+..+++|++|+
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEE
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEE
Confidence 9999987 66655 4455555555553
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=2.3e-10 Score=119.23 Aligned_cols=138 Identities=19% Similarity=0.264 Sum_probs=71.7
Q ss_pred cccCCCCCCCCCccceEeeccCCCCcccCCCC--CCCCcCeEEEeccCCCccc-cccccCCCccccccccCCCCCcceee
Q 048135 1005 RKSMPESPINLECLHQIYIWDCSSFTSFPKGG--LPNTLSRISIGKCENLVAL-PDRMHNLSSLQELEICFPTSLTTLTI 1081 (1189)
Q Consensus 1005 ~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~--~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~L~~L~l 1081 (1189)
++.+|..+. ++|+.|++++| .++.++... ..++|+.|++++|. +..+ |..+.++++|++|++
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~L----------- 87 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVL----------- 87 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEEC-----------
T ss_pred cCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEEC-----------
Confidence 344454332 45666666665 344444322 23356666666633 3333 455555555555555
Q ss_pred ccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccC
Q 048135 1082 EDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNC 1161 (1189)
Q Consensus 1082 ~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c 1161 (1189)
+.|.++.+++..|..+++|++|+|++| .+..++... +..+++|+.|++++| .++.++...+..+++|+.|++++|
T Consensus 88 -s~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 88 -YGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDA--FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp -CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -CCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHH--cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 344555555555566666666666664 333333221 244556666666655 445555344555666666666664
Q ss_pred C
Q 048135 1162 P 1162 (1189)
Q Consensus 1162 ~ 1162 (1189)
+
T Consensus 163 ~ 163 (220)
T 2v9t_B 163 P 163 (220)
T ss_dssp C
T ss_pred C
Confidence 4
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=1.5e-10 Score=120.78 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=55.4
Q ss_pred eEEEeccCCCcccCccccCcccccEEeccccccccccc--cccCCCCCcEEeccCccccccCch-hhhccccCCcccccC
Q 048135 527 RVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPE--STCSLINLQTLLLRRCFYLMKWPS-KVMNLINLRHLDITD 603 (1189)
Q Consensus 527 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~--~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~ 603 (1189)
++++++++.++.+|..+. ..+++|+|++|.|+.+|. .++++++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 366777777777776553 245677777777776632 2667777777777776 4555543 566777777777776
Q ss_pred CcccccCCCC-CCCCCCCcee
Q 048135 604 VHLIKEMPLG-MEEWKCLQTL 623 (1189)
Q Consensus 604 ~~~~~~~p~~-i~~L~~L~~L 623 (1189)
|. +..+|.. ++.+++|++|
T Consensus 91 N~-l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 91 NR-LENVQHKMFKGLESLKTL 110 (220)
T ss_dssp SC-CCCCCGGGGTTCSSCCEE
T ss_pred Cc-cCccCHhHhcCCcCCCEE
Confidence 66 4444332 3334333333
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.14 E-value=7.1e-12 Score=142.41 Aligned_cols=87 Identities=11% Similarity=0.136 Sum_probs=57.6
Q ss_pred hhhcCCC-cceEEEeccCCCccc-CccccCc-----ccccEEecccccccccc-cc----ccCC-CCCcEEeccCccccc
Q 048135 518 DLLPKFK-KLRVLSLKSYHIIEL-PNSIGRL-----MHLRYLDMSNTAISSLP-ES----TCSL-INLQTLLLRRCFYLM 584 (1189)
Q Consensus 518 ~~~~~l~-~Lr~L~L~~~~~~~l-p~~i~~l-----~~L~~L~L~~~~i~~LP-~~----i~~L-~~L~~L~L~~~~~l~ 584 (1189)
..+..++ +|++|+|++|.+... +..+..+ ++|++|+|++|.+...+ .. +..+ ++|++|++++|. +.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~ 122 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FS 122 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CC
Confidence 4566677 788888888887765 4555554 78888888888877543 32 3444 788888888874 44
Q ss_pred cCch-hhh----c-cccCCcccccCCc
Q 048135 585 KWPS-KVM----N-LINLRHLDITDVH 605 (1189)
Q Consensus 585 ~lp~-~i~----~-L~~L~~L~l~~~~ 605 (1189)
..+. .+. . .++|++|++++|.
T Consensus 123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 123 SKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp GSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred cHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 4432 332 2 2578888888776
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.12 E-value=4.7e-10 Score=116.97 Aligned_cols=128 Identities=15% Similarity=0.223 Sum_probs=60.3
Q ss_pred ccceEeeccCCCCcccCC-C--CCCCCcCeEEEeccCCCcccc-ccccCCCccccccccCCCCCcceeeccCCCcccccc
Q 048135 1017 CLHQIYIWDCSSFTSFPK-G--GLPNTLSRISIGKCENLVALP-DRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIE 1092 (1189)
Q Consensus 1017 ~L~~L~l~~~~~l~~~p~-~--~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~ 1092 (1189)
.+++|++++| .++.++. . ...++|++|++++| .++.++ ..+.++++|++|++ +.|.++.+++
T Consensus 33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L------------s~N~l~~~~~ 98 (220)
T 2v70_A 33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILL------------TSNRLENVQH 98 (220)
T ss_dssp TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC------------CSSCCCCCCG
T ss_pred CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEEC------------CCCccCccCH
Confidence 3455555555 3444422 1 12335555555553 333333 24455555555544 3344454544
Q ss_pred cCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCC
Q 048135 1093 WGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCP 1162 (1189)
Q Consensus 1093 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 1162 (1189)
..+..+++|++|++++|. +..++... +..+++|+.|++++| .++.++...+..+++|+.|++++|+
T Consensus 99 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNR-ITCVGNDS--FIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGGTTCSSCCEEECTTSC-CCCBCTTS--STTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hHhcCCcCCCEEECCCCc-CCeECHhH--cCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 445555555555555542 33332211 234455555555555 3444422455555555555555543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=6e-11 Score=115.41 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=56.9
Q ss_pred CcceEEEeccCCCc--ccCccccCcccccEEeccccccccccccccCCCCCcEEeccCcccccc-CchhhhccccCCccc
Q 048135 524 KKLRVLSLKSYHII--ELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMK-WPSKVMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~ 600 (1189)
++|+.|++++|.+. .+|..++.+++|++|++++|.++.+ ..++++++|++|++++| .+.. +|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEE
Confidence 45666666666665 5566556666666666666666655 45666666666666665 3333 555555566666666
Q ss_pred ccCCcccccCC--CCCCCCCCCceeC
Q 048135 601 ITDVHLIKEMP--LGMEEWKCLQTLS 624 (1189)
Q Consensus 601 l~~~~~~~~~p--~~i~~L~~L~~L~ 624 (1189)
+++|. +..+| ..++.+++|++|+
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEE
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEe
Confidence 66665 44432 4455555555553
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=1.2e-10 Score=116.03 Aligned_cols=109 Identities=23% Similarity=0.260 Sum_probs=91.5
Q ss_pred hhhhcCCCcceEEEeccCCCcccCccccCcccccEEecccccccc-ccccccCCCCCcEEeccCccccccCc--hhhhcc
Q 048135 517 SDLLPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISS-LPESTCSLINLQTLLLRRCFYLMKWP--SKVMNL 593 (1189)
Q Consensus 517 ~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-LP~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L 593 (1189)
+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|++|++++| .+..+| ..+..+
T Consensus 42 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l 119 (168)
T 2ell_A 42 EGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKL 119 (168)
T ss_dssp SSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSC
T ss_pred HHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcC
Confidence 34467788999999999999888 788999999999999999988 7777788999999999998 678876 678999
Q ss_pred ccCCcccccCCcccccCCC----CCCCCCCCceeCceec
Q 048135 594 INLRHLDITDVHLIKEMPL----GMEEWKCLQTLSNFIV 628 (1189)
Q Consensus 594 ~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~ 628 (1189)
++|++|++++|. +..+|. .+..+++|++|+...+
T Consensus 120 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 120 ECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 999999999997 677776 6788888888866443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=8e-11 Score=114.53 Aligned_cols=106 Identities=21% Similarity=0.263 Sum_probs=91.5
Q ss_pred hhhhcCCCcceEEEeccCCCcccCccccCcccccEEecccccccc-ccccccCCCCCcEEeccCccccccCc--hhhhcc
Q 048135 517 SDLLPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISS-LPESTCSLINLQTLLLRRCFYLMKWP--SKVMNL 593 (1189)
Q Consensus 517 ~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-LP~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L 593 (1189)
+..+..+++|++|++++|.++.+ ..++++++|++|++++|.+.. +|..++++++|++|++++| .+..+| ..++.+
T Consensus 35 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l 112 (149)
T 2je0_A 35 EGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL 112 (149)
T ss_dssp CSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred HHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence 34567889999999999999988 788999999999999999998 7888888999999999998 577765 789999
Q ss_pred ccCCcccccCCcccccCCC----CCCCCCCCceeCc
Q 048135 594 INLRHLDITDVHLIKEMPL----GMEEWKCLQTLSN 625 (1189)
Q Consensus 594 ~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~ 625 (1189)
++|++|++++|. +..+|. .++.+++|+.|+.
T Consensus 113 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 113 ENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 999999999997 677765 5777888888754
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=1.1e-10 Score=144.27 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=96.5
Q ss_pred hhhhhhcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccc
Q 048135 515 FLSDLLPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLI 594 (1189)
Q Consensus 515 ~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 594 (1189)
.+++.|..++.|++|+|++|.+..+|..+.++++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 456678889999999999999999999999999999999999999999999999999999999999 6779999999999
Q ss_pred cCCcccccCCcccccCCCCCCCCCCCceeCc
Q 048135 595 NLRHLDITDVHLIKEMPLGMEEWKCLQTLSN 625 (1189)
Q Consensus 595 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 625 (1189)
+|++|+|++|. +..+|.+|++|++|++|++
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEEC
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeC
Confidence 99999999997 7899999999999998854
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.06 E-value=2.2e-10 Score=129.90 Aligned_cols=169 Identities=22% Similarity=0.287 Sum_probs=84.0
Q ss_pred eEEEeccCCCcccCccccCcccccEEecccccccccccc-cc-CCCCCcEEeccCccccccCc-hhhhccccCCcccccC
Q 048135 527 RVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPES-TC-SLINLQTLLLRRCFYLMKWP-SKVMNLINLRHLDITD 603 (1189)
Q Consensus 527 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~-i~-~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 603 (1189)
++++++++.++.+|..+. ..+++|+|++|.|+.+|.. +. ++++|++|+|++| .+..+| ..+.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 345555555555555443 2355555555555555443 33 5555555555555 344443 2355555555555555
Q ss_pred CcccccCCC-CCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeeecCCCCcchHHHhccCCCCCCcce
Q 048135 604 VHLIKEMPL-GMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLECRYPFRAYSQSVLGMLKSHTSLKE 682 (1189)
Q Consensus 604 ~~~~~~~p~-~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~L~~ 682 (1189)
|. +..+|. .+..+++|++|+..... +.. .....+..+++|+.
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L~~N~----------------------i~~--------------~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLLYNNH----------------------IVV--------------VDRNAFEDMAQLQK 140 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSSC----------------------CCE--------------ECTTTTTTCTTCCE
T ss_pred Cc-CCcCCHHHhCCCcCCCEEECCCCc----------------------ccE--------------ECHHHhCCcccCCE
Confidence 55 333333 24444444444321100 000 00122334456666
Q ss_pred EEEeeeCCCCCCCCCCC--CCCCceeEEEecCCCCCCCCC--CCCcccC--cceEeeccc
Q 048135 683 LTIKCYGGTRFPSWVGD--PSFSNIVMITLESCTNCRSLP--SLGLLCS--LKALTIREM 736 (1189)
Q Consensus 683 L~l~~~~~~~~p~~~~~--~~~~~L~~L~l~~~~~~~~lp--~l~~l~~--L~~L~L~~~ 736 (1189)
|++++|.+..+|..+.. ..+++|+.|+|++|. +..+| .+..++. |+.|++.++
T Consensus 141 L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp EECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred EECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCC
Confidence 66666666666655421 136777777777764 33444 2445554 366777664
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=5.1e-10 Score=115.86 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=85.8
Q ss_pred CCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCC--CCCCcCeEEEeccCCCccccc-cccCCCcccccc
Q 048135 993 SLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGG--LPNTLSRISIGKCENLVALPD-RMHNLSSLQELE 1069 (1189)
Q Consensus 993 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~--~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 1069 (1189)
+++.|++++|......+..+..+++|++|++++| .++.++... ..++|++|++++| .++.+|. .+.++++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEE
Confidence 4555555555443333344566677777777666 455555432 2346777777764 4444443 345566666665
Q ss_pred ccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCC
Q 048135 1070 ICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRN 1149 (1189)
Q Consensus 1070 l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~ 1149 (1189)
+ +.+.++.+++..+..+++|++|++++| .+..++... +..+++|+.|++++|+. ...
T Consensus 107 L------------~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~~--------~~~ 163 (208)
T 2o6s_A 107 L------------NTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGV--FDRLTSLQYIWLHDNPW--------DCT 163 (208)
T ss_dssp C------------CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSCCB--------CCC
T ss_pred c------------CCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHH--hccCCCccEEEecCCCe--------ecC
Confidence 5 344555555555666777777777764 344555432 24456777777776632 233
Q ss_pred CCccCceeeccCCCCCCCCC
Q 048135 1150 LTSLDLLRIRNCPKLTSFPE 1169 (1189)
Q Consensus 1150 l~~L~~L~l~~c~~l~~lp~ 1169 (1189)
+++|+.|+++.|..-..+|.
T Consensus 164 ~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 164 CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTTHHHHHHHHHCTTTBBC
T ss_pred CCCHHHHHHHHHhCCceeec
Confidence 45666676666555555554
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=2.4e-10 Score=114.64 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=70.8
Q ss_pred CcceEEEeccCCCcccCccccCcccccEEeccccccccccccc-cCCCCCcEEeccCccccccCch--hhhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPEST-CSLINLQTLLLRRCFYLMKWPS--KVMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 600 (1189)
++|++|++++|.++.+ ..++.+++|++|++++|.|+.+|+.+ +.+++|++|++++| .+..+|. .+..+++|++|+
T Consensus 42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence 4777777777777776 56777777777777777777777554 77777777777777 5667776 677777777777
Q ss_pred ccCCcccccCCCC----CCCCCCCceeCc
Q 048135 601 ITDVHLIKEMPLG----MEEWKCLQTLSN 625 (1189)
Q Consensus 601 l~~~~~~~~~p~~----i~~L~~L~~L~~ 625 (1189)
+++|. +..+|.. ++.+++|+.|+.
T Consensus 120 l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 120 ILRNP-VTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred ecCCC-CCCcHhHHHHHHHHCCccceeCC
Confidence 77776 5566653 566666666654
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=2.3e-10 Score=136.76 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=67.3
Q ss_pred cceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCC
Q 048135 525 KLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDV 604 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 604 (1189)
.|++|++++|.++.+|. |+.+++|++|+|++|.|+.+|..+++|++|++|+|++| .++.+| .+++|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 36677777777777765 77777777777777777777777777777777777776 556666 6777777777777776
Q ss_pred cccccC--CCCCCCCCCCceeCc
Q 048135 605 HLIKEM--PLGMEEWKCLQTLSN 625 (1189)
Q Consensus 605 ~~~~~~--p~~i~~L~~L~~L~~ 625 (1189)
. +..+ |..++.+++|++|+.
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEEC
T ss_pred C-CCCCCCcHHHhcCCCCCEEEe
Confidence 6 4444 666666666666643
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=2.2e-10 Score=114.93 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=99.3
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcc-cccEEeccccccccccccccCCCCCcEEeccCccccccCchhh-hccccCC
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLM-HLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKV-MNLINLR 597 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 597 (1189)
+..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++| .+..+|..+ +.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 4567899999999999999865 55555 999999999999998 67999999999999998 678888766 9999999
Q ss_pred cccccCCcccccCCC--CCCCCCCCceeCceecccCccccCCCCcchhhhhcCCCCCccceeee
Q 048135 598 HLDITDVHLIKEMPL--GMEEWKCLQTLSNFIVSEGLENATDLQDPTKAILSDKNDLECLVLEC 659 (1189)
Q Consensus 598 ~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 659 (1189)
+|++++|. +..+|. .++.+++|+.|+...+. +..........+..+++|+.|+++.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-----i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-----VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-----GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-----CCCcHhHHHHHHHHCCccceeCCCc
Confidence 99999998 677776 67788888887553221 1111111112345556666666553
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.02 E-value=6.1e-10 Score=126.17 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=60.5
Q ss_pred CCCccceEeeccCCCCcccCCC--CCCCCcCeEEEeccCCCcccc-ccccCCCccccccccCCCCCcceeeccCCCcccc
Q 048135 1014 NLECLHQIYIWDCSSFTSFPKG--GLPNTLSRISIGKCENLVALP-DRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPL 1090 (1189)
Q Consensus 1014 ~l~~L~~L~l~~~~~l~~~p~~--~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l 1090 (1189)
.+++|+.|++++| .++.++.. ..+++|++|++++| .++.++ ..+.++++|++|++ +.|.+..+
T Consensus 62 ~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L------------~~N~i~~~ 127 (361)
T 2xot_A 62 RLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLL------------YNNHIVVV 127 (361)
T ss_dssp CCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC------------CSSCCCEE
T ss_pred cccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEEC------------CCCcccEE
Confidence 4455555555544 34444332 12235555555552 333333 23444444444444 33444444
Q ss_pred cccCCCCCCccceEEEcccCCcccCcccccc-CCCCCccceeecccCCCCcccCcCCCCCCCc--cCceeeccCC
Q 048135 1091 IEWGLHKLTALRNLSIGGCLDAVSFPQEELG-MMLPTSLTKLAIAKFPELKHLSSKGFRNLTS--LDLLRIRNCP 1162 (1189)
Q Consensus 1091 ~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~--L~~L~l~~c~ 1162 (1189)
++..|..+++|+.|+|++| .+..+|..... +..+++|+.|+|++| .+..+|...+..+++ |+.|++++|+
T Consensus 128 ~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 4445555555555555553 44445443210 023455555555555 444444333444444 2555555543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=1.3e-09 Score=110.89 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=60.1
Q ss_pred eEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCc-hhhhccccCCcccccCCc
Q 048135 527 RVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWP-SKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 527 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 605 (1189)
++++++++.++.+|..+. .+|++|+|++|.|+.+|..+.++++|++|++++| .+..+| ..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 567788888888877653 5788888888888888877888888888888887 455555 457788888888888776
Q ss_pred ccccCC
Q 048135 606 LIKEMP 611 (1189)
Q Consensus 606 ~~~~~p 611 (1189)
+..+|
T Consensus 90 -l~~i~ 94 (193)
T 2wfh_A 90 -LRCIP 94 (193)
T ss_dssp -CCBCC
T ss_pred -cCEeC
Confidence 44444
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.5e-09 Score=121.42 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=125.6
Q ss_pred CCCCCccccccccccccCC-CCCCCCCccceEeeccCCCCcccCCCCCCCCcCeEEEeccC-----CCcccc-ccccCCC
Q 048135 991 GRSLGENMTWKFEIRKSMP-ESPINLECLHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCE-----NLVALP-DRMHNLS 1063 (1189)
Q Consensus 991 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~-----~l~~lp-~~~~~l~ 1063 (1189)
|++|+++.+.+ .++.++ ..|.+|++|+.|++.+| .+..++...+...+....+.... ....+. ..+.++.
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 99999999988 455554 46888999999999887 45567666555444444443221 111110 1122222
Q ss_pred cc--------------------------cccccc-------------CCCCCcceeeccCCCcccccccCCCCCCccceE
Q 048135 1064 SL--------------------------QELEIC-------------FPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNL 1104 (1189)
Q Consensus 1064 ~L--------------------------~~L~l~-------------~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L 1104 (1189)
.| ..+.+. .|++|+.|++.++ .++.++...|.++++|++|
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEE
Confidence 22 222221 3889999998854 4888999999999999999
Q ss_pred EEcccCCcccCccccccCCCCCccc-eeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCC--CCCCCCcceee
Q 048135 1105 SIGGCLDAVSFPQEELGMMLPTSLT-KLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPE--VGLPSSLLQLY 1180 (1189)
Q Consensus 1105 ~l~~c~~l~~l~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~~sL~~L~ 1180 (1189)
++.++ +..++... |..+++|+ .+++.+ .++.++...|.++++|+.+++.+ +.+..++. ...+++|+.++
T Consensus 256 ~l~~n--i~~I~~~a--F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN--LKTIGQRV--FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT--CCEECTTT--TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc--cceehHHH--hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 99985 88888754 67889999 999987 78888878999999999999977 57888876 33456666664
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.98 E-value=3.7e-08 Score=112.89 Aligned_cols=262 Identities=13% Similarity=0.045 Sum_probs=157.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCcccc-----Cc--CceEEEEecCCc-CHHHHHHHHHHHccCCCC--CCCChhHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVE-----GF--NPKAWVCVSEDF-DVLKITKAILESVTSSPS--NLKDLNQVQIQ 209 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~-----~f--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~ 209 (1189)
+.+.|+|++|+||||+|+++++..... .+ ...+|+...... +...++..++.++.+... ...+..+....
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 125 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDK 125 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 346699999999999999998753111 02 235677766666 788888888888743322 12334566777
Q ss_pred HHHHHccCceEEEecCCCCCCh----hh-HHhhccccCCCCCCcEEEEEcCCchhhhcc------CCCceEeCCCCChhh
Q 048135 210 LEKAIAGQKFLIVLDNVWSKNY----GL-WKTLKSPFMAGTPGSKIIVTTRSVDVALTL------GPIDYYNLELLSDDD 278 (1189)
Q Consensus 210 l~~~l~~~~~LlvlDdv~~~~~----~~-~~~l~~~l~~~~~gs~iivTtr~~~v~~~~------~~~~~~~l~~L~~~~ 278 (1189)
+.+.++.++.+|||||++.-.. +. +..+.... .+.+||+||+.......+ .....+++++++.++
T Consensus 126 l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~ 201 (384)
T 2qby_B 126 IKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQ 201 (384)
T ss_dssp HHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHH
T ss_pred HHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHH
Confidence 7888877777999999955211 12 23333222 578899999876422111 112389999999999
Q ss_pred HHHHHHHhhccC-CCcccchhHHHHHHHHHHHhC---CChH-HHHHHHhhh--c-C--CCChhHHHHHHhhhccCcCCCC
Q 048135 279 CWSIFEKHAFEN-RDASAHQNLELIHAKVVEKCK---GLPQ-AAANLGGLL--C-C--KQRDDEWQGILKSRIWDLSEES 348 (1189)
Q Consensus 279 ~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~c~---g~Pl-ai~~~g~~L--~-~--~~~~~~w~~~l~~~~~~~~~~~ 348 (1189)
..+++...+... ......+ +..+.+++.++ |.|. |+.++-... . + .-..+.+..++...
T Consensus 202 ~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~-------- 270 (384)
T 2qby_B 202 LKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY-------- 270 (384)
T ss_dssp HHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH--------
Confidence 999999875311 1111122 34566777777 8886 444333322 1 1 12356666666542
Q ss_pred ChHHHHHHhHhcCchhHHHHHhHhccCCCCceechHHHHHHHHHcCC-cccCccchhHHHHHHHHHHHHHhccccccc
Q 048135 349 DILPVLRLSYHHLPSHLKRCFSYSAIFPKGYEFEEMELILLWMADGL-IQQSEDNKQMEDLGHKYFRDLLSRSIFQKS 425 (1189)
Q Consensus 349 ~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~wia~g~-i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 425 (1189)
....+.-+++.|+.+.|..+..++....+..+. .. ..-+++.+ +.. ........++..|..++++...
T Consensus 271 -~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~--~~~~~~~~g~~~-----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 271 -EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KM--YTDLCNKFKQKP-----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HH--HHHHHHHTTCCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred -hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HH--HHHHHHHcCCCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 124566778999999888887777621101111 01 11222211 111 1123456789999999999874
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=3.1e-09 Score=118.73 Aligned_cols=238 Identities=17% Similarity=0.084 Sum_probs=137.9
Q ss_pred CCCCcEEEeccCCCcccccccCCCCCccEEEEecCCCCCCCccccccC--------CCccceEEEccCCCcccccccCC-
Q 048135 880 LTSPKKLCIENCQRLVSFQEVCFLPILGELEIKNCSALKFLPEGMKHN--------NVCLECLLIEGCNSLKFVVKGQL- 950 (1189)
Q Consensus 880 l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~- 950 (1189)
+++|+.|++++|.........+.++.+..+.+..+ .+|...+.. +++|+.|++.+ .++.++...+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhh
Confidence 67788888887643311111122333444444432 566666666 78888888876 5666665533
Q ss_pred -CCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccc---cccC-CCCCCCCCccc-eEeec
Q 048135 951 -LLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEI---RKSM-PESPINLECLH-QIYIW 1024 (1189)
Q Consensus 951 -~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~---~~~l-p~~~~~l~~L~-~L~l~ 1024 (1189)
+++|+.+++.+. .+..++.. .+.+|.++..+....... ...+ ...+.++..|+ .+.+.
T Consensus 122 ~~~~L~~l~l~~n-~i~~i~~~---------------aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~ 185 (329)
T 3sb4_A 122 GCDNLKICQIRKK-TAPNLLPE---------------ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVG 185 (329)
T ss_dssp TCTTCCEEEBCCS-SCCEECTT---------------SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEEC
T ss_pred cCcccceEEcCCC-Cccccchh---------------hhcCCCceEEecCcchhhhhccccccccccccccccceeEEec
Confidence 567777777763 23333221 122343333333322111 0011 11222333333 22222
Q ss_pred cCCCCccc-----------------------CCC---CCCCCcCeEEEeccCCCccccc-cccCCCccccccccCCCCCc
Q 048135 1025 DCSSFTSF-----------------------PKG---GLPNTLSRISIGKCENLVALPD-RMHNLSSLQELEICFPTSLT 1077 (1189)
Q Consensus 1025 ~~~~l~~~-----------------------p~~---~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~L~ 1077 (1189)
....+... ... ..+++|+.|++++| .++.+|. .|.++++|+++++
T Consensus 186 ~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l------- 257 (329)
T 3sb4_A 186 AMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKL------- 257 (329)
T ss_dssp TTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEEC-------
T ss_pred CCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEEC-------
Confidence 21111100 000 01457888888873 4666663 4666666666665
Q ss_pred ceeeccCCCcccccccCCCCCCccc-eEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCce
Q 048135 1078 TLTIEDFNLYKPLIEWGLHKLTALR-NLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLL 1156 (1189)
Q Consensus 1078 ~L~l~~~~~l~~l~~~~l~~l~~L~-~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L 1156 (1189)
.+ .++.++...|.++++|+ .+++.+ .+..++... |..+++|+.|++.++ .+..++...|.++++|+.+
T Consensus 258 ----~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a--F~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 258 ----PH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA--FMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ----CT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTT--TTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEE
T ss_pred ----Cc--ccceehHHHhhCChhccEEEEEcc--cceEEchhh--hhCCccCCEEEeCCC-ccCccchhhhcCCcchhhh
Confidence 43 27778888999999999 999987 677887654 678899999999777 7888987889999999988
Q ss_pred ee
Q 048135 1157 RI 1158 (1189)
Q Consensus 1157 ~l 1158 (1189)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.95 E-value=3.2e-09 Score=107.81 Aligned_cols=126 Identities=17% Similarity=0.287 Sum_probs=100.0
Q ss_pred ceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccccccCCCccccccccCCCCCcceeeccCCCcccccccCCCCC
Q 048135 1019 HQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPDRMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKL 1098 (1189)
Q Consensus 1019 ~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l 1098 (1189)
+.++++++ .++.+|. +++++|++|++++ +.++.+|..+.++++|+.|++ +.+.++.+++..|..+
T Consensus 13 ~~l~~~~~-~l~~ip~-~~~~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~L------------s~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPK-GIPRDVTELYLDG-NQFTLVPKELSNYKHLTLIDL------------SNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTS-CCSSCCS-CCCTTCCEEECCS-SCCCSCCGGGGGCTTCCEEEC------------CSSCCCCCCTTTTTTC
T ss_pred CEEEcCCC-CCCcCCC-CCCCCCCEEECCC-CcCchhHHHhhcccCCCEEEC------------CCCcCCEeCHhHccCC
Confidence 56777665 5777875 3567899999998 567788888888888888888 5677788887788999
Q ss_pred CccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCC
Q 048135 1099 TALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPK 1163 (1189)
Q Consensus 1099 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 1163 (1189)
++|++|+|++| .+..++... +..+++|+.|++++| .+..+|...+..+++|+.|++++|+.
T Consensus 78 ~~L~~L~Ls~N-~l~~i~~~~--f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 78 TQLLTLILSYN-RLRCIPPRT--FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCCEEECCSS-CCCBCCTTT--TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCCC-ccCEeCHHH--hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 99999999996 566666532 367789999999988 67788856788899999999998754
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.95 E-value=3.4e-08 Score=113.52 Aligned_cols=268 Identities=17% Similarity=0.069 Sum_probs=157.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCcccc----CcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCC-CCChhHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVE----GFN-PKAWVCVSEDFDVLKITKAILESVTSSPSN-LKDLNQVQIQLEKA 213 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~----~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~ 213 (1189)
+.+.|+|++|+||||+|+++++..... +.. ..+|+......+...+...++.+++..... ..+..+....+.+.
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 124 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 456799999999999999998753211 112 346777777778889999999988654322 23355556666666
Q ss_pred H--ccCceEEEecCCCCCChh--hHHhh---ccccCCC--CCCcEEEEEcCCchhhhccC-------CCceEeCCCCChh
Q 048135 214 I--AGQKFLIVLDNVWSKNYG--LWKTL---KSPFMAG--TPGSKIIVTTRSVDVALTLG-------PIDYYNLELLSDD 277 (1189)
Q Consensus 214 l--~~~~~LlvlDdv~~~~~~--~~~~l---~~~l~~~--~~gs~iivTtr~~~v~~~~~-------~~~~~~l~~L~~~ 277 (1189)
+ .+++.+|||||++.-... ..+.+ ....... ..+..+|.||+.......+. ....+.+++++.+
T Consensus 125 l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~ 204 (387)
T 2v1u_A 125 LSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAP 204 (387)
T ss_dssp HTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHH
T ss_pred HhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHH
Confidence 6 345889999999542211 12222 2222111 34567888887663322111 1147899999999
Q ss_pred hHHHHHHHhhccC-CCcccchhHHHHHHHHHHHhC---CCh-HHHHHHHhhhc-----CCC--ChhHHHHHHhhhccCcC
Q 048135 278 DCWSIFEKHAFEN-RDASAHQNLELIHAKVVEKCK---GLP-QAAANLGGLLC-----CKQ--RDDEWQGILKSRIWDLS 345 (1189)
Q Consensus 278 ~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~c~---g~P-lai~~~g~~L~-----~~~--~~~~w~~~l~~~~~~~~ 345 (1189)
+..+++...+... ......+ +..+.++++++ |.| .|+.++..... +.. ..+.++.++...
T Consensus 205 ~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~----- 276 (387)
T 2v1u_A 205 QLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI----- 276 (387)
T ss_dssp HHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH-----
Confidence 9999998875320 1111122 24567777887 999 33333332221 111 245555555442
Q ss_pred CCCChHHHHHHhHhcCchhHHHHHhHhccCCCC-ceechHHHHHHHH----HcCCcccCccchhHHHHHHHHHHHHHhcc
Q 048135 346 EESDILPVLRLSYHHLPSHLKRCFSYSAIFPKG-YEFEEMELILLWM----ADGLIQQSEDNKQMEDLGHKYFRDLLSRS 420 (1189)
Q Consensus 346 ~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~-~~~~~~~li~~wi----a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ 420 (1189)
....+.-++..|+.+.+..+..++....+ ..+....+.+... ..| ... .....+..+++.|...+
T Consensus 277 ----~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~l~~L~~~g 346 (387)
T 2v1u_A 277 ----ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH-----VTLRRVSGIISELDMLG 346 (387)
T ss_dssp ----HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC-----CCHHHHHHHHHHHHHTT
T ss_pred ----hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC-----CCHHHHHHHHHHHHhCC
Confidence 12345667889999998888777743222 2454453333321 123 111 11245677899999999
Q ss_pred ccccc
Q 048135 421 IFQKS 425 (1189)
Q Consensus 421 ll~~~ 425 (1189)
++...
T Consensus 347 li~~~ 351 (387)
T 2v1u_A 347 IVKSR 351 (387)
T ss_dssp SEEEE
T ss_pred CeEEE
Confidence 99873
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=1.7e-09 Score=110.03 Aligned_cols=98 Identities=21% Similarity=0.334 Sum_probs=48.8
Q ss_pred cceEEEeccCCCcccCcc--ccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCch-hhhccccCCccc
Q 048135 525 KLRVLSLKSYHIIELPNS--IGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPS-KVMNLINLRHLD 600 (1189)
Q Consensus 525 ~Lr~L~L~~~~~~~lp~~--i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 600 (1189)
+|++|++++|.+..+|.. |+++++|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 455555555555555432 45555555555555555544 444555555555555555 3333332 245555555555
Q ss_pred ccCCcccccCCCCCCCCCCCcee
Q 048135 601 ITDVHLIKEMPLGMEEWKCLQTL 623 (1189)
Q Consensus 601 l~~~~~~~~~p~~i~~L~~L~~L 623 (1189)
+++|......|..++.+++|++|
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCCcCCeeCHHHhhcCCCCCEE
Confidence 55554222334444444444444
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=5.8e-10 Score=137.83 Aligned_cols=96 Identities=21% Similarity=0.186 Sum_probs=70.8
Q ss_pred eEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCCcc
Q 048135 527 RVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDVHL 606 (1189)
Q Consensus 527 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 606 (1189)
..++++.+.+...|+.+..+.+|++|+|++|.+..+|..+.++++|++|+|++| .+..+|..|++|++|++|+|++|.
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~- 281 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR- 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-
Confidence 334455555665678899999999999999999999999999999999999998 677999999999999999999998
Q ss_pred cccCCCCCCCCCCCceeC
Q 048135 607 IKEMPLGMEEWKCLQTLS 624 (1189)
Q Consensus 607 ~~~~p~~i~~L~~L~~L~ 624 (1189)
+..+|..|++|++|++|+
T Consensus 282 l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 282 LTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CSSCCSSGGGGTTCSEEE
T ss_pred CCccChhhcCCCCCCEEE
Confidence 668888887777777664
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=2e-11 Score=125.24 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=38.6
Q ss_pred CcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCCcccccCCc
Q 048135 536 IIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 536 ~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 605 (1189)
++.+|..++++++|++|++++|.+..+| .++++++|++|++++| .+..+|..+..+++|++|++++|.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc
Confidence 4444445555566666666665555555 5555566666666555 445555555555566666655554
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.90 E-value=2.1e-07 Score=106.87 Aligned_cols=267 Identities=13% Similarity=0.044 Sum_probs=162.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCC-CCChhHHHHHHHHHHc--cC
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSN-LKDLNQVQIQLEKAIA--GQ 217 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~ 217 (1189)
.+.|+|++|+||||+|+++++......-...+|+..+...+...+...++..++..... ..+..++...+.+.+. ++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 45699999999999999998753322101356777777778888999999888654321 2345556666666664 56
Q ss_pred ceEEEecCCCCCChhhHHhhccccCCCC----CCcEEEEEcCCchhhhccC-------CCceEeCCCCChhhHHHHHHHh
Q 048135 218 KFLIVLDNVWSKNYGLWKTLKSPFMAGT----PGSKIIVTTRSVDVALTLG-------PIDYYNLELLSDDDCWSIFEKH 286 (1189)
Q Consensus 218 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~ 286 (1189)
+.+||+||++.-+......+...+.... .+..||+||+......... ....+++.+++.++..+++...
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 7899999997765555666655443211 4677888888765433222 1136999999999999999887
Q ss_pred hccCC-CcccchhHHHHHHHHHHHh---------CCChHHHHHHHh-hhc-----CCC--ChhHHHHHHhhhccCcCCCC
Q 048135 287 AFENR-DASAHQNLELIHAKVVEKC---------KGLPQAAANLGG-LLC-----CKQ--RDDEWQGILKSRIWDLSEES 348 (1189)
Q Consensus 287 a~~~~-~~~~~~~~~~~~~~i~~~c---------~g~Plai~~~g~-~L~-----~~~--~~~~w~~~l~~~~~~~~~~~ 348 (1189)
+.... .... -.+....+++.+ +|.|-.+..+.. ... +.. ..+....+..... ..
T Consensus 206 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----~~ 277 (389)
T 1fnn_A 206 AKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL-----FG 277 (389)
T ss_dssp HHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS-----CC
T ss_pred HHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh-----hh
Confidence 53211 1111 134567888898 788754443322 221 111 1223333333211 11
Q ss_pred ChHHHHHHhHhcCchhHHHHHhHhccCC---CCceechHHHHHHHHH----cCCcccCccchhHHHHHHHHHHHHHhccc
Q 048135 349 DILPVLRLSYHHLPSHLKRCFSYSAIFP---KGYEFEEMELILLWMA----DGLIQQSEDNKQMEDLGHKYFRDLLSRSI 421 (1189)
Q Consensus 349 ~i~~~l~~sy~~L~~~~k~~fl~~a~fp---~~~~~~~~~li~~wia----~g~i~~~~~~~~~~~~~~~~~~~L~~~~l 421 (1189)
.+ .-.++.|+.+.+..+..++.+. .+..+....+...+.. .|.... .......++.+|..+++
T Consensus 278 ~~----~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~l~~L~~~gl 347 (389)
T 1fnn_A 278 IS----EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPR------VHSQLWSYLNDLREKGI 347 (389)
T ss_dssp CC----HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCC------CHHHHHHHHHHHHHTTS
T ss_pred hH----HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCC------CHHHHHHHHHHHHhCCC
Confidence 12 2345678888888888787664 2224566666554433 221110 12345678999999999
Q ss_pred cccc
Q 048135 422 FQKS 425 (1189)
Q Consensus 422 l~~~ 425 (1189)
+...
T Consensus 348 i~~~ 351 (389)
T 1fnn_A 348 VETR 351 (389)
T ss_dssp SEEE
T ss_pred eEEe
Confidence 9874
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.89 E-value=2.4e-09 Score=108.93 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=48.4
Q ss_pred eEEEeccCCCcccCccccCcccccEEecccccccccccc--ccCCCCCcEEeccCccccccC-chhhhccccCCcccccC
Q 048135 527 RVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPES--TCSLINLQTLLLRRCFYLMKW-PSKVMNLINLRHLDITD 603 (1189)
Q Consensus 527 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~ 603 (1189)
++++++++.++.+|..+.. +|++|++++|.|..+|.. ++++++|++|+|++| .+..+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 4555555555555554432 555555555555555432 555555555555555 23333 44555555555555555
Q ss_pred CcccccCC-CCCCCCCCCceeC
Q 048135 604 VHLIKEMP-LGMEEWKCLQTLS 624 (1189)
Q Consensus 604 ~~~~~~~p-~~i~~L~~L~~L~ 624 (1189)
|. +..+| ..+..+++|++|+
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 88 NK-IKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp CC-CCEECSSSSTTCTTCCEEE
T ss_pred Cc-CCccCHHHhcCCCCCCEEE
Confidence 55 33332 2355555555554
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.88 E-value=2.3e-09 Score=128.10 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=89.8
Q ss_pred hcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccC--chhhhccccCC
Q 048135 520 LPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKW--PSKVMNLINLR 597 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~ 597 (1189)
+..+++|++|+|++|.++.+|..|+++++|++|+|++|.|+.+| .+++|++|++|+|++| .+..+ |..++.|++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCC
Confidence 67788999999999999999999999999999999999999999 8999999999999998 67777 89999999999
Q ss_pred cccccCCcccccCCCCCCC----CCCCcee
Q 048135 598 HLDITDVHLIKEMPLGMEE----WKCLQTL 623 (1189)
Q Consensus 598 ~L~l~~~~~~~~~p~~i~~----L~~L~~L 623 (1189)
+|++++|. +..+|..+.. +++|+.|
T Consensus 537 ~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 537 LLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred EEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 99999998 7777765443 4555555
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=7.1e-08 Score=109.89 Aligned_cols=236 Identities=12% Similarity=0.161 Sum_probs=116.4
Q ss_pred ccCCCCCCcEEEeccCCCccccccc-CCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCC-CCC
Q 048135 876 RLHGLTSPKKLCIENCQRLVSFQEV-CFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQL-LLP 953 (1189)
Q Consensus 876 ~~~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~ 953 (1189)
.+.+ .+|+.+.+..+ ++.++.. ..-.+|+.+.+.+ .++.++...+..+.+|+.+++.++ .++.++...+ ..+
T Consensus 131 aF~~-~~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 131 AFRN-SQIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAG 204 (401)
T ss_dssp TTTT-CCCSEEECCTT--CCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCC
T ss_pred hccc-CCccEEEeCCC--ccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecc
Confidence 3444 36777777653 5555431 1224677777764 677777777777778888877653 3444544422 345
Q ss_pred cceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccC
Q 048135 954 LKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFP 1033 (1189)
Q Consensus 954 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p 1033 (1189)
|+.+.+.+ +++.+. ...|.++++|+.+++.++ ++.++
T Consensus 205 L~~l~lp~--~l~~I~---------------------------------------~~aF~~~~~L~~l~l~~~--l~~I~ 241 (401)
T 4fdw_A 205 IEEVLLPV--TLKEIG---------------------------------------SQAFLKTSQLKTIEIPEN--VSTIG 241 (401)
T ss_dssp CSEEECCT--TCCEEC---------------------------------------TTTTTTCTTCCCEECCTT--CCEEC
T ss_pred cCEEEeCC--chheeh---------------------------------------hhHhhCCCCCCEEecCCC--ccCcc
Confidence 55555542 232222 123444555555555432 44444
Q ss_pred CCCCC-CCcCeEEEeccCCCcccc-ccccCCCccccccccCCCCCcceeeccC----CCcccccccCCCCCCccceEEEc
Q 048135 1034 KGGLP-NTLSRISIGKCENLVALP-DRMHNLSSLQELEICFPTSLTTLTIEDF----NLYKPLIEWGLHKLTALRNLSIG 1107 (1189)
Q Consensus 1034 ~~~~~-~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~L~~L~l~~~----~~l~~l~~~~l~~l~~L~~L~l~ 1107 (1189)
...+. .+|+.+.+.+ .++.++ ..|.++++|+.+++ .++ +....++...|.++++|+.++|.
T Consensus 242 ~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l-----------~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 242 QEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTT-----------YGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEE-----------ESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEe-----------CCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 33322 2555555522 333332 33444444444443 111 11123444455556666666555
Q ss_pred ccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCCC---CCCCCCcceeee
Q 048135 1108 GCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFPE---VGLPSSLLQLYI 1181 (1189)
Q Consensus 1108 ~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~---~~~~~sL~~L~i 1181 (1189)
+ .+..++... |..+++|+.++|.+ ++..++...|.++ +|+.+++.++ .+..++. .+.+.+++.|++
T Consensus 309 ~--~i~~I~~~a--F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 309 E--SIRILGQGL--LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp T--TCCEECTTT--TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEE
T ss_pred C--ceEEEhhhh--hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEe
Confidence 2 344554432 34455566666633 2555554556666 6666666553 3333433 123344555544
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=4e-09 Score=105.01 Aligned_cols=93 Identities=27% Similarity=0.447 Sum_probs=43.0
Q ss_pred eEEEeccCCCcccCccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCchh-hhccccCCcccccCC
Q 048135 527 RVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLDITDV 604 (1189)
Q Consensus 527 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 604 (1189)
++++++++.+..+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 344455555554544442 4455555555555444 333444555555555554 34444443 244555555555544
Q ss_pred cccccCCCC-CCCCCCCcee
Q 048135 605 HLIKEMPLG-MEEWKCLQTL 623 (1189)
Q Consensus 605 ~~~~~~p~~-i~~L~~L~~L 623 (1189)
. +..+|.. +..+++|++|
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEE
T ss_pred c-cceeCHHHhccccCCCEE
Confidence 4 3344433 4444444444
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.85 E-value=5.8e-08 Score=111.51 Aligned_cols=266 Identities=15% Similarity=0.082 Sum_probs=153.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCc---CceEEEEecCCcCHHHHHHHHHHHccCCCC-CCCChhHHHHHHHHHHc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGF---NPKAWVCVSEDFDVLKITKAILESVTSSPS-NLKDLNQVQIQLEKAIA 215 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~ 215 (1189)
+.+.|+|++|+||||+|+++++..... + ...+|+......+...+...++..++.... ...+..+....+.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 124 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKK-FLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR 124 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHH-TCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHH-hcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 456799999999999999998743211 2 135677766666777788888877754322 12234555566666664
Q ss_pred --cCceEEEecCCCCCC----hhhHHhhccccCC-CCCCcEEEEEcCCchhhhccCC-------CceEeCCCCChhhHHH
Q 048135 216 --GQKFLIVLDNVWSKN----YGLWKTLKSPFMA-GTPGSKIIVTTRSVDVALTLGP-------IDYYNLELLSDDDCWS 281 (1189)
Q Consensus 216 --~~~~LlvlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~-------~~~~~l~~L~~~~~~~ 281 (1189)
+++.+||+|+++.-. .+.+..+...+.. ...+..+|+||+.......+.. ...+++++++.++..+
T Consensus 125 ~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~ 204 (386)
T 2qby_A 125 DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELED 204 (386)
T ss_dssp TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHH
T ss_pred ccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHH
Confidence 348999999995421 2334444333211 2235667888887654332211 1479999999999999
Q ss_pred HHHHhhccCC-CcccchhHHHHHHHHHHHhC---CChHHH-HHHHhhhc-----C--CCChhHHHHHHhhhccCcCCCCC
Q 048135 282 IFEKHAFENR-DASAHQNLELIHAKVVEKCK---GLPQAA-ANLGGLLC-----C--KQRDDEWQGILKSRIWDLSEESD 349 (1189)
Q Consensus 282 lf~~~a~~~~-~~~~~~~~~~~~~~i~~~c~---g~Plai-~~~g~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~ 349 (1189)
++...+.... ..... .+....+++.++ |.|..+ .++..... + .-..+.++.++...
T Consensus 205 il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~--------- 272 (386)
T 2qby_A 205 ILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI--------- 272 (386)
T ss_dssp HHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH---------
T ss_pred HHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH---------
Confidence 9988643111 11111 344566777777 999843 33332221 1 11234455444432
Q ss_pred hHHHHHHhHhcCchhHHHHHhHhccCCC-C-ceechHHHHHHH--HH--cCCcccCccchhHHHHHHHHHHHHHhccccc
Q 048135 350 ILPVLRLSYHHLPSHLKRCFSYSAIFPK-G-YEFEEMELILLW--MA--DGLIQQSEDNKQMEDLGHKYFRDLLSRSIFQ 423 (1189)
Q Consensus 350 i~~~l~~sy~~L~~~~k~~fl~~a~fp~-~-~~~~~~~li~~w--ia--~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~ 423 (1189)
....+.-.+..+|.+.+..+..++...+ + ..+....+.... ++ .| +.. ........+++.|...+++.
T Consensus 273 ~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~-----~~~~~~~~~l~~L~~~gli~ 346 (386)
T 2qby_A 273 ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEA-----VTQRRVSDIINELDMVGILT 346 (386)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCC-----CCHHHHHHHHHHHHHHTSEE
T ss_pred hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCEE
Confidence 1235666788999998888888875432 2 123333332221 11 12 111 01133567889999999997
Q ss_pred c
Q 048135 424 K 424 (1189)
Q Consensus 424 ~ 424 (1189)
.
T Consensus 347 ~ 347 (386)
T 2qby_A 347 A 347 (386)
T ss_dssp E
T ss_pred E
Confidence 6
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.85 E-value=9.3e-09 Score=103.13 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=59.4
Q ss_pred ceEEEeccCCCcccCccccCcccccEEecccccccccccc-ccCCCCCcEEeccCccccccCchh-hhccccCCcccccC
Q 048135 526 LRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPES-TCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLDITD 603 (1189)
Q Consensus 526 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 603 (1189)
.+.++++++.++.+|..+. .+|++|++++|.++.+|.. ++++++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 4567777778877776553 5788888888888877654 577888888888877 56666654 57788888888877
Q ss_pred CcccccCCC
Q 048135 604 VHLIKEMPL 612 (1189)
Q Consensus 604 ~~~~~~~p~ 612 (1189)
|. +..+|.
T Consensus 86 N~-l~~~~~ 93 (177)
T 2o6r_A 86 NK-LQSLPN 93 (177)
T ss_dssp SC-CCCCCT
T ss_pred CC-ccccCH
Confidence 76 444443
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=5.2e-09 Score=103.87 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=61.4
Q ss_pred ceEEEeccCCCcccCccccCcccccEEeccccccccc-cccccCCCCCcEEeccCccccccCchh-hhccccCCcccccC
Q 048135 526 LRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSL-PESTCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLDITD 603 (1189)
Q Consensus 526 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 603 (1189)
.++++++++.++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++| .+..+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 4566777777777776553 6677777777777766 445667777777777776 45566554 36677777777777
Q ss_pred CcccccCCCC-CCCCCCCceeC
Q 048135 604 VHLIKEMPLG-MEEWKCLQTLS 624 (1189)
Q Consensus 604 ~~~~~~~p~~-i~~L~~L~~L~ 624 (1189)
|. +..+|.+ +..+++|++|+
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEE
T ss_pred Cc-cCEeCHHHhcCCCCCCEEE
Confidence 66 5555543 56666666654
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.81 E-value=2.1e-08 Score=100.45 Aligned_cols=128 Identities=27% Similarity=0.327 Sum_probs=81.5
Q ss_pred cceEeeccCCCCcccCCCCCCCCcCeEEEeccCCCccccc-cccCCCccccccccCCCCCcceeeccCCCcccccccCCC
Q 048135 1018 LHQIYIWDCSSFTSFPKGGLPNTLSRISIGKCENLVALPD-RMHNLSSLQELEICFPTSLTTLTIEDFNLYKPLIEWGLH 1096 (1189)
Q Consensus 1018 L~~L~l~~~~~l~~~p~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~ 1096 (1189)
.+.++++++ .++.+|. ..+++|++|++++| .++.+|. .+.++++|++|++ ..+.++.+++..+.
T Consensus 9 ~~~l~~~~~-~l~~~p~-~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l------------~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPT-GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSL------------SQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSS-CCSSCCT-TCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEEC------------CSSCCCCCCTTTTT
T ss_pred CCEEEecCC-CCccCCC-CCCCCCcEEEeCCC-cccEeCHHHhcCcccccEEEC------------CCCcceEeChhHcc
Confidence 455666555 4666663 34457777777774 4555543 3456666666666 34556666666667
Q ss_pred CCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCC
Q 048135 1097 KLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKL 1164 (1189)
Q Consensus 1097 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l 1164 (1189)
.+++|++|++++| .+..+|... +..+++|+.|++++| .++.+|...+..+++|++|++++|+..
T Consensus 74 ~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 74 KLTKLTILYLHEN-KLQSLPNGV--FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEEECCCC-CccccCHHH--hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 7778888888775 455555432 245677888888777 566777455677788888888776543
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=4e-09 Score=105.04 Aligned_cols=89 Identities=21% Similarity=0.253 Sum_probs=78.7
Q ss_pred CcceEEEeccCCCccc-CccccCcccccEEecccccccccccc-ccCCCCCcEEeccCccccccCchh-hhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNTAISSLPES-TCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 600 (1189)
++|++|+|++|.++.+ |..|+++++|++|+|++|.|+.+|.. +.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 6899999999999998 67899999999999999999999876 589999999999998 78888876 89999999999
Q ss_pred ccCCcccccCCCCC
Q 048135 601 ITDVHLIKEMPLGM 614 (1189)
Q Consensus 601 l~~~~~~~~~p~~i 614 (1189)
+++|. +...|..+
T Consensus 112 L~~N~-~~c~~~~~ 124 (174)
T 2r9u_A 112 LYNNP-WDCECRDI 124 (174)
T ss_dssp CCSSC-BCTTBGGG
T ss_pred eCCCC-cccccccH
Confidence 99997 55555433
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.78 E-value=2e-10 Score=117.83 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=85.6
Q ss_pred hhhcCCCcceEEEeccCCCcccCccccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhhccccCC
Q 048135 518 DLLPKFKKLRVLSLKSYHIIELPNSIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVMNLINLR 597 (1189)
Q Consensus 518 ~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 597 (1189)
..+..+++|++|++++|.++.+| .++++++|++|++++|.+..+|..++.+++|++|++++| .+..+| .++.+++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 35778889999999999999988 889999999999999999999988888899999999998 677787 689999999
Q ss_pred cccccCCcccccCCC--CCCCCCCCceeC
Q 048135 598 HLDITDVHLIKEMPL--GMEEWKCLQTLS 624 (1189)
Q Consensus 598 ~L~l~~~~~~~~~p~--~i~~L~~L~~L~ 624 (1189)
+|++++|. +..+|. .+..+++|++|+
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 99999887 555443 455555555553
No 152
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.76 E-value=1.1e-07 Score=105.97 Aligned_cols=241 Identities=13% Similarity=0.045 Sum_probs=128.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+.|+|.+|+|||++|+++++.... ..+++..+......++.. .+... ..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~----~~~~~~~~~~~~~~~l~~---------------------~l~~~-~~~~~ 92 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGV----NLRVTSGPAIEKPGDLAA---------------------ILANS-LEEGD 92 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTC----CEEEECTTTCCSHHHHHH---------------------HHTTT-CCTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCC----CEEEEeccccCChHHHHH---------------------HHHHh-ccCCC
Confidence 45679999999999999999874221 123343322222211111 11110 13466
Q ss_pred EEEecCCCCCChhhHHhhccccCCC------------------CCCcEEEEEcCCchhh-hcc-C-CCceEeCCCCChhh
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAG------------------TPGSKIIVTTRSVDVA-LTL-G-PIDYYNLELLSDDD 278 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~iivTtr~~~v~-~~~-~-~~~~~~l~~L~~~~ 278 (1189)
+|++||+..-.....+.+...+... .++.++|.||...... ... . ....+++.+++.+|
T Consensus 93 ~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e 172 (324)
T 1hqc_A 93 ILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEE 172 (324)
T ss_dssp EEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHH
T ss_pred EEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHH
Confidence 8888888654433333333222111 1245677766644321 111 1 12578999999999
Q ss_pred HHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHHHhhhcC------CC--ChhHHHHHHhhhccCcCCCCCh
Q 048135 279 CWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANLGGLLCC------KQ--RDDEWQGILKSRIWDLSEESDI 350 (1189)
Q Consensus 279 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L~~------~~--~~~~w~~~l~~~~~~~~~~~~i 350 (1189)
..+++.+.+...+... . .+....++++++|.|-.+..+...+.. .. ..+....++...
T Consensus 173 ~~~~l~~~~~~~~~~~-~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~---------- 238 (324)
T 1hqc_A 173 LAQGVMRDARLLGVRI-T---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL---------- 238 (324)
T ss_dssp HHHHHHHHHHTTTCCC-C---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhcCCCC-C---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----------
Confidence 9999888764322211 1 345678999999999887766544321 11 122333333221
Q ss_pred HHHHHHhHhcCchhHHHHHhHhccCCCCc-----------eechHHHHH----HHHHcCCcccCccchhHHHHHHHHHH-
Q 048135 351 LPVLRLSYHHLPSHLKRCFSYSAIFPKGY-----------EFEEMELIL----LWMADGLIQQSEDNKQMEDLGHKYFR- 414 (1189)
Q Consensus 351 ~~~l~~sy~~L~~~~k~~fl~~a~fp~~~-----------~~~~~~li~----~wia~g~i~~~~~~~~~~~~~~~~~~- 414 (1189)
...+..++...+..+..+.....+- .+++..+.+ +-+..|++.....+....+.|..|+.
T Consensus 239 ----~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~ 314 (324)
T 1hqc_A 239 ----GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGY 314 (324)
T ss_dssp ----TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTC
T ss_pred ----cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhc
Confidence 1223455666666665544332222 133333332 35667888765555667788888887
Q ss_pred HHHhcccccc
Q 048135 415 DLLSRSIFQK 424 (1189)
Q Consensus 415 ~L~~~~ll~~ 424 (1189)
++.+|+++|+
T Consensus 315 ~~~~~~~~~~ 324 (324)
T 1hqc_A 315 PPPVGPLLEP 324 (324)
T ss_dssp CCCC------
T ss_pred CCCCCCCCCC
Confidence 8888888874
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.74 E-value=8.2e-08 Score=102.41 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=74.9
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhh-c-cCCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVAL-T-LGPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++.+||+||++.-+...++.+...+.....+.++|+||+...... . ......+++++++.+|..+++...+...+..
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678999999977556677777766655556788999887654221 1 1223579999999999999999887543221
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANLGGLL 324 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~g~~L 324 (1189)
. . .+....|++.|+|.|..+..+...+
T Consensus 205 ~-~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 205 H-E---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp B-C---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-C---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1 3456789999999999988765443
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=3.9e-07 Score=103.71 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=116.3
Q ss_pred cccCCCCCccccccccccccCCCCCCCCCccceEeeccCCCCcccCCCCC--CCCcCeEEEeccCCCccccc-cccCCCc
Q 048135 988 VSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSSFTSFPKGGL--PNTLSRISIGKCENLVALPD-RMHNLSS 1064 (1189)
Q Consensus 988 l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~--~~~L~~L~l~~c~~l~~lp~-~~~~l~~ 1064 (1189)
+.+|++|+.+++.++ .++.++.....+++|+.+.+.+ .++.++...+ .++|+.+.+.+ +++.++. .|.+ .+
T Consensus 176 F~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 176 FYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SG 249 (401)
T ss_dssp TTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CC
T ss_pred hhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CC
Confidence 345566666666543 2344444444467888888864 3777766554 34788888876 3555543 3333 45
Q ss_pred cccccccCCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCC----cccCccccccCCCCCccceeecccCCCCc
Q 048135 1065 LQELEICFPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLD----AVSFPQEELGMMLPTSLTKLAIAKFPELK 1140 (1189)
Q Consensus 1065 L~~L~l~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~----l~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 1140 (1189)
|+.+.+ . +.++.+....|.++++|+.+++.++.. ...++... |..+++|+.+++.+ .+.
T Consensus 250 L~~i~l-----------p--~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a--F~~c~~L~~l~l~~--~i~ 312 (401)
T 4fdw_A 250 ITTVKL-----------P--NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC--LEGCPKLARFEIPE--SIR 312 (401)
T ss_dssp CSEEEE-----------E--TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT--TTTCTTCCEECCCT--TCC
T ss_pred ccEEEe-----------C--CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH--hhCCccCCeEEeCC--ceE
Confidence 555544 2 345666777899999999999988532 22455543 67889999999984 588
Q ss_pred ccCcCCCCCCCccCceeeccCCCCCCCCC--CCCCCCcceeeecCC
Q 048135 1141 HLSSKGFRNLTSLDLLRIRNCPKLTSFPE--VGLPSSLLQLYIDGC 1184 (1189)
Q Consensus 1141 ~l~~~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~~sL~~L~i~~c 1184 (1189)
.++...|.++++|+.+.|.. .+..++. .... +|+.+++.++
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp EECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred EEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 89888899999999999965 4777775 3345 8999999764
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=2.7e-08 Score=98.69 Aligned_cols=81 Identities=30% Similarity=0.377 Sum_probs=74.1
Q ss_pred CcceEEEeccCCCccc-CccccCcccccEEecccccccccccc-ccCCCCCcEEeccCccccccCchh-hhccccCCccc
Q 048135 524 KKLRVLSLKSYHIIEL-PNSIGRLMHLRYLDMSNTAISSLPES-TCSLINLQTLLLRRCFYLMKWPSK-VMNLINLRHLD 600 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 600 (1189)
++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. +.++++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 6899999999999998 67799999999999999999999876 589999999999998 67888765 89999999999
Q ss_pred ccCCc
Q 048135 601 ITDVH 605 (1189)
Q Consensus 601 l~~~~ 605 (1189)
+++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 99997
No 156
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.60 E-value=4.4e-07 Score=94.95 Aligned_cols=161 Identities=14% Similarity=0.031 Sum_probs=97.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+.|+|.+|+|||++|+++++......+. ..+.+..+.......+...+........ .-.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~v 105 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP---------------IGGAPFKI 105 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC---------------STTCSCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccC---------------CCccCceE
Confidence 5699999999999999998743222222 2233333333333222221111110000 00256889
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhh-h-ccCCCceEeCCCCChhhHHHHHHHhhccCCCcccchh
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVA-L-TLGPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQN 298 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~ 298 (1189)
||+||++.-....++.+...+.....+.++|+||+..... . .......+++.+++.++..+++.+.+...+... .
T Consensus 106 liiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~-~-- 182 (226)
T 2chg_A 106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI-T-- 182 (226)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-C--
T ss_pred EEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCC-C--
Confidence 9999997765556666666655555678899998865321 1 112224899999999999999988764322211 1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHH
Q 048135 299 LELIHAKVVEKCKGLPQAAANLG 321 (1189)
Q Consensus 299 ~~~~~~~i~~~c~g~Plai~~~g 321 (1189)
.+....+++.++|.|..+..+.
T Consensus 183 -~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 183 -EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCHHHHHHHH
Confidence 2456788899999998655433
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.44 E-value=1.6e-06 Score=99.30 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=44.1
Q ss_pred CCCCCcceeeccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCC
Q 048135 1072 FPTSLTTLTIEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLT 1151 (1189)
Q Consensus 1072 ~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~ 1151 (1189)
.|.+|+.+.+. +.++.+....|.++++|+.++|.. .++.++.. +|..+++|+++++..+ +..++...|.+++
T Consensus 295 ~~~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~--aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 295 GCSSLTEVKLL--DSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKR--SFRGCTSLSNINFPLS--LRKIGANAFQGCI 366 (394)
T ss_dssp TCTTCCEEEEC--TTCCEECTTTTTTCTTCCEECCCT--TCCEECTT--TTTTCTTCCEECCCTT--CCEECTTTBTTCT
T ss_pred ccccccccccc--cccceechhhhcCCCCCCEEEeCC--cccEEhHH--hccCCCCCCEEEECcc--ccEehHHHhhCCC
Confidence 34555555543 234555555566666666666643 24445443 2445566666666432 5555555566666
Q ss_pred ccCceeecc
Q 048135 1152 SLDLLRIRN 1160 (1189)
Q Consensus 1152 ~L~~L~l~~ 1160 (1189)
+|+.+++..
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 666666643
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.41 E-value=3.2e-07 Score=103.29 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=42.8
Q ss_pred EeccC-CCcccCccccCcccccEEeccc-ccccccc-ccccCCCCCcEEeccCccccccCc-hhhhccccCCcccccCCc
Q 048135 530 SLKSY-HIIELPNSIGRLMHLRYLDMSN-TAISSLP-ESTCSLINLQTLLLRRCFYLMKWP-SKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 530 ~L~~~-~~~~lp~~i~~l~~L~~L~L~~-~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 605 (1189)
+++++ .++.+|. |+.+.+|++|+|++ |.|..+| ..|++|++|++|+|++| .+..+| ..+.+|++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 45554 5555555 55555555555554 5555554 33555555555555555 334333 234555555555555554
Q ss_pred ccccCCCC
Q 048135 606 LIKEMPLG 613 (1189)
Q Consensus 606 ~~~~~p~~ 613 (1189)
+..+|..
T Consensus 92 -l~~~~~~ 98 (347)
T 2ifg_A 92 -LESLSWK 98 (347)
T ss_dssp -CSCCCST
T ss_pred -cceeCHH
Confidence 4444443
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=9.7e-07 Score=98.28 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=97.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-ccCce
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI-AGQKF 219 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~ 219 (1189)
+.|+|++|+||||+|+.+++......+. ..+++..+.......+ +++++.+.... ..+ .+++.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~--------------~~~~~~~~~ 109 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKK--------------LHLPPGKHK 109 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBC--------------CCCCTTCCE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHhcc--------------ccCCCCCce
Confidence 5699999999999999998753222121 2333333332222111 11111111000 001 34588
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchh-hhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCcccch
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDV-ALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQ 297 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~ 297 (1189)
++|+||++.-....++.+...+.....++++|+||+...- ... ......+++.+++.++..+++...+...+....
T Consensus 110 viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-- 187 (323)
T 1sxj_B 110 IVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT-- 187 (323)
T ss_dssp EEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--
T ss_pred EEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 9999999775555666666666555567888888876432 111 122358999999999999999887643221111
Q ss_pred hHHHHHHHHHHHhCCChH-HHHHHHhh
Q 048135 298 NLELIHAKVVEKCKGLPQ-AAANLGGL 323 (1189)
Q Consensus 298 ~~~~~~~~i~~~c~g~Pl-ai~~~g~~ 323 (1189)
.+....+++.++|.|. |+..+...
T Consensus 188 --~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 188 --NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2456789999999995 45555433
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.36 E-value=4.1e-07 Score=102.47 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=75.3
Q ss_pred hcCCCcceEEEecc-CCCcccC-ccccCcccccEEeccccccccccc-cccCCCCCcEEeccCccccccCchhhhccccC
Q 048135 520 LPKFKKLRVLSLKS-YHIIELP-NSIGRLMHLRYLDMSNTAISSLPE-STCSLINLQTLLLRRCFYLMKWPSKVMNLINL 596 (1189)
Q Consensus 520 ~~~l~~Lr~L~L~~-~~~~~lp-~~i~~l~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 596 (1189)
+..+++|++|+|++ |.+..+| ..|+.|.+|++|+|++|.|+.+|+ .|++|++|++|+|++| .+..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCc
Confidence 78889999999996 9999997 679999999999999999998865 6899999999999998 788888776555559
Q ss_pred CcccccCCc
Q 048135 597 RHLDITDVH 605 (1189)
Q Consensus 597 ~~L~l~~~~ 605 (1189)
++|++.+|.
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 999999886
No 161
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.35 E-value=2.4e-07 Score=83.33 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH--------------------------HHhhhhhhhHHhhhhhH
Q 048135 11 FLKVLFDRLMSREVMHFARQHGIRSKLEKWRKTFLIY--------------------------SDLAYDVEDVLDEFTTE 64 (1189)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--------------------------~~~~yd~ed~ld~~~~~ 64 (1189)
+++.+++++++....++....|+++++++|+.+|..| ||+|||+|||+|+|.|+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777778888889999999888888777 99999999999999998
Q ss_pred HH
Q 048135 65 VL 66 (1189)
Q Consensus 65 ~~ 66 (1189)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.18 E-value=2.4e-05 Score=89.48 Aligned_cols=278 Identities=14% Similarity=0.089 Sum_probs=152.4
Q ss_pred cccCCCCCCcEEEeccCCCccccccc--CCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCCCC
Q 048135 875 IRLHGLTSPKKLCIENCQRLVSFQEV--CFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQLLL 952 (1189)
Q Consensus 875 ~~~~~l~~L~~L~l~~~~~l~~~~~~--~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 952 (1189)
.++.++++|+.+.+.. .++.++.. ..+++|+.+++.+ .++.++...+..+.+|+.+.+.. .+..+....+..
T Consensus 65 ~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~aF~~ 138 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL--MLKSIGVEAFKG 138 (394)
T ss_dssp TTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTT
T ss_pred HHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccC--ceeeecceeeec
Confidence 4678889999999964 46666543 3368899999875 47778877777777777765542 122222211100
Q ss_pred -CcceEE------------eecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccC-CCCCCCCCcc
Q 048135 953 -PLKKLQ------------IRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSM-PESPINLECL 1018 (1189)
Q Consensus 953 -~L~~L~------------l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~l-p~~~~~l~~L 1018 (1189)
.+.... +.+|.+|+.+.-. .....+..-.+.+|++|+.+.+.++ ++.+ ...+.++..|
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~------~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLP------DSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILL 210 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECC------TTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTC
T ss_pred ccccccccCccccccchhhhcccCCCcEEecC------CccceeccccccCCCCceEEEcCCC--ceEeCchhhcccccc
Confidence 010000 1122222211100 0001122223344555555555332 2222 2234445555
Q ss_pred ceEeeccCCCCcccCCCCC-CCCcCeEEEeccCCCcccc-ccccCCCccccccc------------cCCCCCcceeeccC
Q 048135 1019 HQIYIWDCSSFTSFPKGGL-PNTLSRISIGKCENLVALP-DRMHNLSSLQELEI------------CFPTSLTTLTIEDF 1084 (1189)
Q Consensus 1019 ~~L~l~~~~~l~~~p~~~~-~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l------------~~~~~L~~L~l~~~ 1084 (1189)
+.+.+..+ ...+....+ ..+|+.+.+.. .+..+. ..+.++..|+.+.+ ..|.+++.+....
T Consensus 211 ~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~- 285 (394)
T 4fs7_A 211 ENMEFPNS--LYYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS- 285 (394)
T ss_dssp CBCCCCTT--CCEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS-
T ss_pred ceeecCCC--ceEeehhhcccCCCceEEECC--CceecccccccccccceeEEcCCCcceeeccccccccccceeccCc-
Confidence 55554332 112211111 23566666643 223332 33455556665555 2234444443322
Q ss_pred CCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCC
Q 048135 1085 NLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKL 1164 (1189)
Q Consensus 1085 ~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l 1164 (1189)
..++...+..+++|+.+.+.+ .+..++... |..+++|++++|.+ .++.++...|.++++|+.+.+.. .+
T Consensus 286 ---~~i~~~~F~~~~~L~~i~l~~--~i~~I~~~a--F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l 354 (394)
T 4fs7_A 286 ---VIVPEKTFYGCSSLTEVKLLD--SVKFIGEEA--FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SL 354 (394)
T ss_dssp ---SEECTTTTTTCTTCCEEEECT--TCCEECTTT--TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TC
T ss_pred ---eeecccccccccccccccccc--ccceechhh--hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cc
Confidence 124455678889999999875 366676543 56789999999964 47888878899999999999975 37
Q ss_pred CCCCC--CCCCCCcceeeec
Q 048135 1165 TSFPE--VGLPSSLLQLYID 1182 (1189)
Q Consensus 1165 ~~lp~--~~~~~sL~~L~i~ 1182 (1189)
+.++. ...+.+|+.+++.
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEE
T ss_pred cEehHHHhhCCCCCCEEEEC
Confidence 77765 3345678877764
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=0.00017 Score=82.38 Aligned_cols=127 Identities=15% Similarity=0.015 Sum_probs=71.2
Q ss_pred ccCCC-CCCcEEEeccCCCccccccc--CCCCCccEEEEecC--CCCCCCccccccCCCccceEEEccCCCcccccccC-
Q 048135 876 RLHGL-TSPKKLCIENCQRLVSFQEV--CFLPILGELEIKNC--SALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQ- 949 (1189)
Q Consensus 876 ~~~~l-~~L~~L~l~~~~~l~~~~~~--~~l~~L~~L~l~~c--~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~- 949 (1189)
.+.++ ..|+.+.+-. .++.+... ..+++|+.+.+.++ ..++.++...+..+.+|+.+.+.+ .++.+....
T Consensus 58 aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTT
T ss_pred hccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhh
Confidence 45555 3588888864 35555442 23678888888764 346777777776666666655432 233333332
Q ss_pred -CCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeecc
Q 048135 950 -LLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWD 1025 (1189)
Q Consensus 950 -~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 1025 (1189)
.+.+|+.+.+.. .+.. +..-.+.+|..|..+.+.+. ++.+.........|+.+.+..
T Consensus 134 ~~c~~L~~i~lp~--~~~~---------------I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 134 HHCEELDTVTIPE--GVTS---------------VADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp TTCTTCCEEECCT--TCCE---------------ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred hhhcccccccccc--eeee---------------ecccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 234555555532 1121 22234556777777776542 444544444456788888754
No 164
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=1.2e-05 Score=89.59 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=94.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH-----H-
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA-----I- 214 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l- 214 (1189)
+.|+|++|+||||+|+.+++......+. ..+.+..+....... ....+.+. +
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~ 107 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV---------------------IREKVKEFARTKPIG 107 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT---------------------THHHHHHHHHSCCGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH---------------------HHHHHHHHHhhCCcC
Confidence 4599999999999999998742211111 122333222111100 01111111 1
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhh-hcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVA-LTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+++.++|+||++.-....++.+...+.....++++|+||....-. ... .....+++.+++.++..+++...+...+.
T Consensus 108 ~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (327)
T 1iqp_A 108 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 187 (327)
T ss_dssp GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 2567899999997765566777766665555678899888765321 111 11247899999999999999887643322
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHHHHHh
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAANLGG 322 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~~~g~ 322 (1189)
.. + .+....|++.++|.|..+..+..
T Consensus 188 ~~-~---~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 188 EL-T---EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EE-C---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC-C---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 1 34567889999999986654443
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.95 E-value=0.00023 Score=81.16 Aligned_cols=253 Identities=13% Similarity=0.140 Sum_probs=140.4
Q ss_pred cccCCCCCCcEEEeccC--CCcccccccC--CCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccC-
Q 048135 875 IRLHGLTSPKKLCIENC--QRLVSFQEVC--FLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQ- 949 (1189)
Q Consensus 875 ~~~~~l~~L~~L~l~~~--~~l~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~- 949 (1189)
..+.++++|+.+.+..+ ..++.+.... ...+|+.+.+.+ .++.++...+..+.+|+.+.+.. .+..+....
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F 156 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHHCEELDTVTIPE--GVTSVADGMF 156 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhhhhcccccccccc--eeeeecccce
Confidence 47889999999999875 3455554422 256676655543 57777888887889999998863 334444332
Q ss_pred -CCCCcceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccCCCCCCCCCccceEeeccCCC
Q 048135 950 -LLLPLKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSMPESPINLECLHQIYIWDCSS 1028 (1189)
Q Consensus 950 -~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 1028 (1189)
.+.+|+.+.+.+ .++.+.. ..+. +..|+.+.+..... ..-...+..+.+|+........
T Consensus 157 ~~c~~L~~i~~~~--~~~~I~~---------------~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~- 216 (394)
T 4gt6_A 157 SYCYSLHTVTLPD--SVTAIEE---------------RAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSES- 216 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECT---------------TTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSS-
T ss_pred ecccccccccccc--eeeEecc---------------cccc-ccceeEEEECCccc-ccccchhhhccccceecccccc-
Confidence 245677766654 2333321 1111 23455555532211 1113445667777776654431
Q ss_pred CcccCCC-------------CCC--CCcCeEEEeccCCCcccc-ccccCCCccccccc------------cCCCCCccee
Q 048135 1029 FTSFPKG-------------GLP--NTLSRISIGKCENLVALP-DRMHNLSSLQELEI------------CFPTSLTTLT 1080 (1189)
Q Consensus 1029 l~~~p~~-------------~~~--~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l------------~~~~~L~~L~ 1080 (1189)
...+... ..+ ..+..+.+. +.++.+. ..|.++..|+.+.+ ..|++|+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~ 294 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP--NGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIE 294 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC--TTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred cccccceeecccccccccccccccccccceEEcC--CcceEcccceeeecccccEEecccccceecCccccccccccccc
Confidence 1111110 000 012222221 1222222 24555666666655 2356666666
Q ss_pred eccCCCcccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeecc
Q 048135 1081 IEDFNLYKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRN 1160 (1189)
Q Consensus 1081 l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~ 1160 (1189)
+. +.++.++...|.++++|+.++|.. .++.+... +|..+++|+++.|-+ .++.+....|.++++|+.+++.+
T Consensus 295 l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~--aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 295 FS--SRITELPESVFAGCISLKSIDIPE--GITQILDD--AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTT--TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred CC--CcccccCceeecCCCCcCEEEeCC--cccEehHh--HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 53 445666667777777777777764 35555543 255667777777743 36666666677777777777765
Q ss_pred C
Q 048135 1161 C 1161 (1189)
Q Consensus 1161 c 1161 (1189)
+
T Consensus 367 ~ 367 (394)
T 4gt6_A 367 S 367 (394)
T ss_dssp C
T ss_pred c
Confidence 3
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.88 E-value=1e-06 Score=99.24 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=38.5
Q ss_pred CcceEEEeccCCCccc-----Ccccc-CcccccEEecccccccc--ccccccCCCCCcEEeccCccccccCc-hhh----
Q 048135 524 KKLRVLSLKSYHIIEL-----PNSIG-RLMHLRYLDMSNTAISS--LPESTCSLINLQTLLLRRCFYLMKWP-SKV---- 590 (1189)
Q Consensus 524 ~~Lr~L~L~~~~~~~l-----p~~i~-~l~~L~~L~L~~~~i~~--LP~~i~~L~~L~~L~L~~~~~l~~lp-~~i---- 590 (1189)
+.|+.|+|++|.++.. ...+. ...+|++|+|++|.+.. ++.-...+.+|++|+|++| .+.... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 3466666666665432 11121 12466666666665542 1111223455666666665 332211 111
Q ss_pred -hccccCCcccccCCc
Q 048135 591 -MNLINLRHLDITDVH 605 (1189)
Q Consensus 591 -~~L~~L~~L~l~~~~ 605 (1189)
...++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP 166 (372)
T ss_dssp HSTTCCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCC
Confidence 123556666666654
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.87 E-value=7.9e-05 Score=82.45 Aligned_cols=157 Identities=13% Similarity=0.055 Sum_probs=94.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH--H-ccC
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA--I-AGQ 217 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~ 217 (1189)
+-|+|.+|+|||++|+.+.+......+. ..+.+..+.... .....+........ + .++
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 102 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------------------IDVVRHKIKEFARTAPIGGAP 102 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC------------------TTTSSHHHHHHHHSCCSSSCC
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC------------------hHHHHHHHHHHHhcCCCCCCC
Confidence 5699999999999999988742111111 122233322111 11111111111111 1 256
Q ss_pred ceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCccc
Q 048135 218 KFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDASA 295 (1189)
Q Consensus 218 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~ 295 (1189)
+.++|+||++.-.....+.+...+.....+.++|+||.... +... ......+++.+++.++..+++...+...+...
T Consensus 103 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i- 181 (319)
T 2chq_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI- 181 (319)
T ss_dssp CEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB-
T ss_pred ceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 78999999976555666777777766556788888886543 1111 12235899999999999999887764332211
Q ss_pred chhHHHHHHHHHHHhCCChHHHHHH
Q 048135 296 HQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 296 ~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
. .+....+++.++|.+-.+...
T Consensus 182 ~---~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 182 T---EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp C---HHHHHHHHHTTTTCHHHHHHH
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 345677889999999765433
No 168
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=2.6e-06 Score=82.57 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=8.8
Q ss_pred CcCeEEEeccC
Q 048135 1040 TLSRISIGKCE 1050 (1189)
Q Consensus 1040 ~L~~L~l~~c~ 1050 (1189)
.|+.|++++|.
T Consensus 62 ~L~~LDLs~~~ 72 (176)
T 3e4g_A 62 KIQAIDATDSC 72 (176)
T ss_dssp CEEEEEEESCC
T ss_pred eEeEEeCcCCC
Confidence 78888888875
No 169
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=4.1e-06 Score=93.38 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=33.4
Q ss_pred CCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcc-----cCcCCCCCCCccCceeeccC
Q 048135 1097 KLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKH-----LSSKGFRNLTSLDLLRIRNC 1161 (1189)
Q Consensus 1097 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~l~~l~~L~~L~l~~c 1161 (1189)
.+|+|+.|++++|......+.........++|++|+|+.| .++. ++ .++.++++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~-~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLL-DHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHH-TTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHH-hhcccCCcceEEECCCC
Confidence 4567777777665433222211111123466777777655 3433 33 34455677777777665
No 170
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00037 Score=75.05 Aligned_cols=144 Identities=12% Similarity=-0.028 Sum_probs=81.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC----c-C-ceEEEEecCCcCHHHHHHHHHHHccCCCCCC-CChhHHHHHHHHH-
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG----F-N-PKAWVCVSEDFDVLKITKAILESVTSSPSNL-KDLNQVQIQLEKA- 213 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~----f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~- 213 (1189)
+-|+|++|+|||++|+.|.++..... . + ..+.|......+...++..|++++.+..... ...+.+...+.+.
T Consensus 48 lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~ 127 (318)
T 3te6_A 48 FYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP 127 (318)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh
Confidence 45999999999999999987643211 1 1 2455666666788889999999996543211 1222222222221
Q ss_pred -HccCceEEEecCCCCCChhhHHhhccccCCC-CCCcE--EEEEcCCchhhh---------ccCCCceEeCCCCChhhHH
Q 048135 214 -IAGQKFLIVLDNVWSKNYGLWKTLKSPFMAG-TPGSK--IIVTTRSVDVAL---------TLGPIDYYNLELLSDDDCW 280 (1189)
Q Consensus 214 -l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~--iivTtr~~~v~~---------~~~~~~~~~l~~L~~~~~~ 280 (1189)
-+++++++|||+++.-. .-+.+...+.+. ...++ ||.++...+... .++ ...+..++++.+|-.
T Consensus 128 ~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~ 204 (318)
T 3te6_A 128 KAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQ 204 (318)
T ss_dssp GGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHH
T ss_pred hccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHH
Confidence 14567899999995421 112222111110 12232 334444432211 111 146899999999999
Q ss_pred HHHHHhhc
Q 048135 281 SIFEKHAF 288 (1189)
Q Consensus 281 ~lf~~~a~ 288 (1189)
+++.+++-
T Consensus 205 ~Il~~Rl~ 212 (318)
T 3te6_A 205 QMIITRLK 212 (318)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888763
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.84 E-value=0.00068 Score=75.47 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=83.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+-|+|.+|+|||++|+++.+..... | +.+........ ......+.+ ..+..+
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~-~---~~~~~~~~~~~---------------------~~~~~~~~~--~~~~~v 109 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSAN-I---KTTAAPMIEKS---------------------GDLAAILTN--LSEGDI 109 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCC-E---EEEEGGGCCSH---------------------HHHHHHHHT--CCTTCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCC-e---EEecchhccch---------------------hHHHHHHHh--ccCCCE
Confidence 35699999999999999997642111 2 22222211111 111111111 235678
Q ss_pred EEecCCCCCChhhHHhhccccCCC------------------CCCcEEEEEcCCchhh-hc-c-CCCceEeCCCCChhhH
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAG------------------TPGSKIIVTTRSVDVA-LT-L-GPIDYYNLELLSDDDC 279 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~iivTtr~~~v~-~~-~-~~~~~~~l~~L~~~~~ 279 (1189)
|+||+++.-.......+...+... .++.++|.+|...... .. . .....+++.+++.++.
T Consensus 110 l~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 110 LFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSEL 189 (338)
T ss_dssp EEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHH
T ss_pred EEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHH
Confidence 888888654444444443332221 1134566666543221 11 1 1235799999999999
Q ss_pred HHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 280 WSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 280 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
.+++.+.+-..+.. . -.+....+++.+.|.|-.+..+
T Consensus 190 ~~il~~~~~~~~~~-~---~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 190 ALILQKAALKLNKT-C---EEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp HHHHHHHHHHTTCE-E---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCC-C---CHHHHHHHHHHHCcCHHHHHHH
Confidence 99998876432211 1 1345677888999999555433
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.84 E-value=5.8e-05 Score=86.78 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=91.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCc-C-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGF-N-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
.+.|+|.+|+||||||+++++..... + + .+++++. ..+..++...+... .. ..+.+.++.+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~ 195 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYRKKV 195 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEH------HHHHHHHHHHHHTT-----CH----HHHHHHHTTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeH------HHHHHHHHHHHHcc-----cH----HHHHHHhcCCC
Confidence 45699999999999999998743211 2 1 2344433 23344444444321 11 12334444367
Q ss_pred eEEEecCCCCCCh--hhHHhhccccCC-CCCCcEEEEEcCCch---------hhhccCCCceEeCCCCChhhHHHHHHHh
Q 048135 219 FLIVLDNVWSKNY--GLWKTLKSPFMA-GTPGSKIIVTTRSVD---------VALTLGPIDYYNLELLSDDDCWSIFEKH 286 (1189)
Q Consensus 219 ~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 286 (1189)
-+|++||++.-.. ...+.+...+.. ...|..||+||.+.. +...+....++.+++++.++..+++.+.
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 7999999965321 222333333211 134678888887632 1122222357899999999999999888
Q ss_pred hccCCCcccchhHHHHHHHHHHHhCCChHHHH
Q 048135 287 AFENRDASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
+...+... ++ +....|++.++|.+-.+.
T Consensus 276 ~~~~~~~i-~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 276 LEIEHGEL-PE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHTCCC-CT---THHHHHHHHCCSCHHHHH
T ss_pred HHHcCCCC-CH---HHHHHHHHhcCCCHHHHH
Confidence 74322111 12 235678889999886544
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.78 E-value=0.00014 Score=82.54 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=68.1
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++.++|+||++.-....++.+...+.....+..+|++|.... +... ......+++.+++.++..+++...+-..+..
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999999976555666667666655445677777776443 2111 1223679999999999999988765332211
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANLG 321 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~g 321 (1189)
. . .+....|++.++|.|..+..+.
T Consensus 198 ~-~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 H-E---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp B-C---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred C-C---HHHHHHHHHHCCCCHHHHHHHH
Confidence 1 1 2446789999999998776554
No 174
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.77 E-value=0.00084 Score=76.12 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=78.6
Q ss_pred CCCCCccceEeeccCCCCcccCCCCC--CCCcCeEEEeccCCCcccc-ccccCCCccccccccCCCCCcceeeccCCCcc
Q 048135 1012 PINLECLHQIYIWDCSSFTSFPKGGL--PNTLSRISIGKCENLVALP-DRMHNLSSLQELEICFPTSLTTLTIEDFNLYK 1088 (1189)
Q Consensus 1012 ~~~l~~L~~L~l~~~~~l~~~p~~~~--~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~L~~L~l~~~~~l~ 1088 (1189)
+..+.+|+.+.+... +..++...+ ...|+.+.+.. .++.++ ..+.++.+|+.+.+ . +.+.
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l-----------~--~~i~ 275 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNF-----------Y--AKVK 275 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEE-----------C--CCCS
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCC--CccEeCccccceeehhccccc-----------c--ccce
Confidence 444555666655332 444433322 23566665544 233332 23344444444433 2 3355
Q ss_pred cccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCCCC
Q 048135 1089 PLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTSFP 1168 (1189)
Q Consensus 1089 ~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~lp 1168 (1189)
.+....|.++++|+.+.+.+ ..++.++... |..+++|++++|.+ .++.+....|.++++|+.+.+.. .++.|.
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~a--F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDN-SAIETLEPRV--FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp EECTTTTTTCTTCCEEEECC-TTCCEECTTT--TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred eccccccccccccccccccc-cccceehhhh--hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEc
Confidence 56666788888888888876 3566666543 56778888888854 47777767788888888888854 244443
No 175
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.76 E-value=1.1e-05 Score=85.29 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=85.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|.+|+||||+|+++++..... ...+.|+..+...+. + .+. + +.+ .++.+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~~~~~----------~----------~~~---~-~~~-~~~~v 107 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGIHASI----------S----------TAL---L-EGL-EQFDL 107 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGGGS----------C----------GGG---G-TTG-GGSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHH----------H----------HHH---H-Hhc-cCCCE
Confidence 45699999999999999998743322 233566655432110 0 000 0 011 34678
Q ss_pred EEecCCCCCChhh--HHhhccccCCC-CCC-cEEEEEcCCchh---------hhccCCCceEeCCCCChhhHHHHHHHhh
Q 048135 221 IVLDNVWSKNYGL--WKTLKSPFMAG-TPG-SKIIVTTRSVDV---------ALTLGPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 221 lvlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
||+||++.-.... .+.+...+... ..+ .+||+||+...- ...+.....+++.+++.++..+++...+
T Consensus 108 liiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 108 ICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp EEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 9999996533222 23333222110 112 247777764321 1111112679999999999999998876
Q ss_pred ccCCCcccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 288 FENRDASAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
...+.. .. .+....+++.++|.+-.+..+
T Consensus 188 ~~~~~~-~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 188 AMRGLQ-LP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHTTCC-CC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHcCCC-CC---HHHHHHHHHHccCCHHHHHHH
Confidence 432211 11 345678889999988766543
No 176
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=4.3e-05 Score=80.32 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=56.0
Q ss_pred cCCCcceEEEeccCCCcccC---ccccCcccccEEeccccccccccccccCCC--CCcEEeccCccccccCc-------h
Q 048135 521 PKFKKLRVLSLKSYHIIELP---NSIGRLMHLRYLDMSNTAISSLPESTCSLI--NLQTLLLRRCFYLMKWP-------S 588 (1189)
Q Consensus 521 ~~l~~Lr~L~L~~~~~~~lp---~~i~~l~~L~~L~L~~~~i~~LP~~i~~L~--~L~~L~L~~~~~l~~lp-------~ 588 (1189)
.++++|++|+|++|.+..++ ..++.+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 56778888888888877653 5567788888888888888876 3355555 88888888875444444 2
Q ss_pred hhhccccCCccc
Q 048135 589 KVMNLINLRHLD 600 (1189)
Q Consensus 589 ~i~~L~~L~~L~ 600 (1189)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 256677777775
No 177
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=3.7e-05 Score=74.54 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=31.4
Q ss_pred cCCCCCCcEEEeccCCCcccccc--cCC----CCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcc
Q 048135 877 LHGLTSPKKLCIENCQRLVSFQE--VCF----LPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLK 943 (1189)
Q Consensus 877 ~~~l~~L~~L~l~~~~~l~~~~~--~~~----l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~ 943 (1189)
+..+++|++|++++|..+++... +.. .++|++|+|++|..++.---.....+++|++|++++|+.++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 34566666666666665554321 111 12455555555555544211111234445555555544443
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.55 E-value=3.9e-05 Score=85.38 Aligned_cols=59 Identities=19% Similarity=0.139 Sum_probs=30.0
Q ss_pred cccCcccccEEeccccccccccccccCCCCCcEEeccCccccccCchhhh--ccccCCccccc
Q 048135 542 SIGRLMHLRYLDMSNTAISSLPESTCSLINLQTLLLRRCFYLMKWPSKVM--NLINLRHLDIT 602 (1189)
Q Consensus 542 ~i~~l~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~i~--~L~~L~~L~l~ 602 (1189)
.+..+++|+.|+|+++.-..+|. + .+.+|++|++..|..-......+. .+++|++|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34455666666666653223443 3 266677777765521111112222 56677777664
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.55 E-value=0.00063 Score=74.66 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=73.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
.+-|+|.+|+|||++|+++++...... ....-++.++.. .+..... ..........+.. .+.-
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~l~~~~~-g~~~~~~~~~~~~---~~~~ 132 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD------------DLVGQYI-GHTAPKTKEVLKR---AMGG 132 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG------------GTCCSST-TCHHHHHHHHHHH---HTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH------------Hhhhhcc-cccHHHHHHHHHh---cCCC
Confidence 356999999999999998876432222 111223333311 1110000 0111112222222 2456
Q ss_pred EEEecCCCCC---------ChhhHHhhccccCCCCCCcEEEEEcCCchh----------hhccCCCceEeCCCCChhhHH
Q 048135 220 LIVLDNVWSK---------NYGLWKTLKSPFMAGTPGSKIIVTTRSVDV----------ALTLGPIDYYNLELLSDDDCW 280 (1189)
Q Consensus 220 LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v----------~~~~~~~~~~~l~~L~~~~~~ 280 (1189)
+|++|+++.- .......+...+.....+..||.||..... ...+ ...+++++++.++-.
T Consensus 133 vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~ 210 (309)
T 3syl_A 133 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELF 210 (309)
T ss_dssp EEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHH
T ss_pred EEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHH
Confidence 9999999632 334455566555555556788888864322 2221 267899999999999
Q ss_pred HHHHHhhcc
Q 048135 281 SIFEKHAFE 289 (1189)
Q Consensus 281 ~lf~~~a~~ 289 (1189)
+++...+..
T Consensus 211 ~il~~~l~~ 219 (309)
T 3syl_A 211 EIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887643
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.54 E-value=0.00068 Score=74.98 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=65.8
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|+++.-..+..+.+...+.....++.+|++|.+.+ +...+ .....+++.++++++..+.+...+ .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-
Confidence 4677899999976555566667666665555777777776653 22221 223689999999999999888764 1
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
.. .+.+..+++.++|.|..+..+
T Consensus 182 ~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 11 234567899999999766543
No 181
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.50 E-value=0.00078 Score=71.86 Aligned_cols=157 Identities=19% Similarity=0.182 Sum_probs=82.1
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-|+|.+|+|||++|+++++.... ..+.+..+.-.+. ........+...+.........
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~----~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~a~~~~~~ 100 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQV----PFLAMAGAEFVEV---------------IGGLGAARVRSLFKEARARAPC 100 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC----CEEEEETTTTSSS---------------STTHHHHHHHHHHHHHHHTCSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC----CEEEechHHHHhh---------------ccChhHHHHHHHHHHHHhcCCe
Confidence 34569999999999999999874321 1233333321110 0001111222233333345678
Q ss_pred EEEecCCCCC------------C---hhhHHhhccccCC--CCCCcEEEEEcCCchhhh-c-c---CCCceEeCCCCChh
Q 048135 220 LIVLDNVWSK------------N---YGLWKTLKSPFMA--GTPGSKIIVTTRSVDVAL-T-L---GPIDYYNLELLSDD 277 (1189)
Q Consensus 220 LlvlDdv~~~------------~---~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~ 277 (1189)
+|++||++.- . ......+...+.. ...+..||.||....... . . .....+.++..+.+
T Consensus 101 vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~ 180 (262)
T 2qz4_A 101 IVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180 (262)
T ss_dssp EEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHH
T ss_pred EEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHH
Confidence 9999999542 0 0111222222221 123556777776544211 1 1 12357889999999
Q ss_pred hHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChH-HHH
Q 048135 278 DCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQ-AAA 318 (1189)
Q Consensus 278 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~ 318 (1189)
+..+++...+...... . ........+++.+.|.+- .|.
T Consensus 181 ~r~~il~~~~~~~~~~-~--~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 181 ERREIFEQHLKSLKLT-Q--SSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp HHHHHHHHHHHHTTCC-B--THHHHHHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCC-c--chhhHHHHHHHHCCCCCHHHHH
Confidence 9999998876432211 1 112234678888888754 443
No 182
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.47 E-value=0.00081 Score=77.02 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=82.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
+-|+|.+|+||||+|+.+.+.... -++.++.. .....+ +.++.. .......+++.+
T Consensus 53 vLL~GppGtGKTtlAr~ia~~~~~------~f~~l~a~~~~~~~i-r~~~~~----------------a~~~~~~~~~~i 109 (447)
T 3pvs_A 53 MILWGPPGTGKTTLAEVIARYANA------DVERISAVTSGVKEI-REAIER----------------ARQNRNAGRRTI 109 (447)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC------EEEEEETTTCCHHHH-HHHHHH----------------HHHHHHTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC------CeEEEEeccCCHHHH-HHHHHH----------------HHHhhhcCCCcE
Confidence 459999999999999999874221 12333221 122211 111111 011112467889
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEE-EcCCch--hh-hccCCCceEeCCCCChhhHHHHHHHhhccCCCc---
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIV-TTRSVD--VA-LTLGPIDYYNLELLSDDDCWSIFEKHAFENRDA--- 293 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~--- 293 (1189)
|++|+++.-.....+.+...+..+ ...+|. ||.+.. +. .......++.+++++.++..+++.+.+-.....
T Consensus 110 LfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~ 187 (447)
T 3pvs_A 110 LFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGG 187 (447)
T ss_dssp EEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTT
T ss_pred EEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhcc
Confidence 999999665444455555444432 233443 555542 11 111223578999999999999988876431100
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
....--.+....+++.++|.+-.+.
T Consensus 188 ~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 188 QDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp SSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred ccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 0111123456788888999886554
No 183
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.46 E-value=1.9e-05 Score=83.00 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=69.6
Q ss_pred EEeccCCCcccCcc----ccCcccccEEecccccccccc---ccccCCCCCcEEeccCccccccCchhhhccc--cCCcc
Q 048135 529 LSLKSYHIIELPNS----IGRLMHLRYLDMSNTAISSLP---ESTCSLINLQTLLLRRCFYLMKWPSKVMNLI--NLRHL 599 (1189)
Q Consensus 529 L~L~~~~~~~lp~~----i~~l~~L~~L~L~~~~i~~LP---~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L 599 (1189)
++++.|....++.. ..++++|+.|+|++|.|..++ ..++.+++|++|+|++| .+..+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceE
Confidence 45555544333322 256889999999999988654 66789999999999998 66666 3466666 99999
Q ss_pred cccCCcccccCCC-------CCCCCCCCceeCcee
Q 048135 600 DITDVHLIKEMPL-------GMEEWKCLQTLSNFI 627 (1189)
Q Consensus 600 ~l~~~~~~~~~p~-------~i~~L~~L~~L~~~~ 627 (1189)
++++|.....+|. .+..+++|+.|+...
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 9999985444552 256677888876533
No 184
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.45 E-value=0.00051 Score=74.34 Aligned_cols=154 Identities=18% Similarity=0.084 Sum_probs=80.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+-|+|.+|+|||++|+++++..... | +.+..+.-. ... ...........+......++.+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~~-~---~~v~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~v 113 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNAT-F---IRVVGSELV--------------KKF-IGEGASLVKDIFKLAKEKAPSI 113 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTCE-E---EEEEGGGGC--------------CCS-TTHHHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC-E---EEEehHHHH--------------Hhc-cchHHHHHHHHHHHHHHcCCeE
Confidence 35699999999999999998743211 1 222221110 000 0001111222223333456689
Q ss_pred EEecCCCCC-----------Chh---hHHhhccccC--CCCCCcEEEEEcCCchhhhc-----cCCCceEeCCCCChhhH
Q 048135 221 IVLDNVWSK-----------NYG---LWKTLKSPFM--AGTPGSKIIVTTRSVDVALT-----LGPIDYYNLELLSDDDC 279 (1189)
Q Consensus 221 lvlDdv~~~-----------~~~---~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~-----~~~~~~~~l~~L~~~~~ 279 (1189)
|+|||++.- ... ....+...+. ....+..||.||...+.... ......+.++..+.++.
T Consensus 114 l~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r 193 (285)
T 3h4m_A 114 IFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193 (285)
T ss_dssp EEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHH
T ss_pred EEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHH
Confidence 999999431 111 1112222221 12246677888875533221 01224789999999999
Q ss_pred HHHHHHhhccCCCcccchhHHHHHHHHHHHhCCC-hHHHH
Q 048135 280 WSIFEKHAFENRDASAHQNLELIHAKVVEKCKGL-PQAAA 318 (1189)
Q Consensus 280 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~ 318 (1189)
.+++...+..... ..... ...+++.+.|. |-.|.
T Consensus 194 ~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 194 LEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp HHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 9999887643221 11112 24566677663 43443
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.43 E-value=0.0014 Score=70.23 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=85.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+-|+|.+|+|||++|+++++... .. .+.+..+. .+.+. ........+...+......+..+|
T Consensus 67 vLl~G~~GtGKT~la~~ia~~~~---~~-~~~i~~~~-------------~~~g~-~~~~~~~~~~~~~~~~~~~~~~vl 128 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAEESN---FP-FIKICSPD-------------KMIGF-SETAKCQAMKKIFDDAYKSQLSCV 128 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT---CS-EEEEECGG-------------GCTTC-CHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhC---CC-EEEEeCHH-------------HhcCC-chHHHHHHHHHHHHHHHhcCCcEE
Confidence 45999999999999999987421 21 12222221 01100 000001122223333334668899
Q ss_pred EecCCCCC----------ChhhHHhhccccC---CCCCCcEEEEEcCCchhhhc---cC-CCceEeCCCCCh-hhHHHHH
Q 048135 222 VLDNVWSK----------NYGLWKTLKSPFM---AGTPGSKIIVTTRSVDVALT---LG-PIDYYNLELLSD-DDCWSIF 283 (1189)
Q Consensus 222 vlDdv~~~----------~~~~~~~l~~~l~---~~~~gs~iivTtr~~~v~~~---~~-~~~~~~l~~L~~-~~~~~lf 283 (1189)
++||++.- .....+.+...+. ..+....||.||...+.... .+ ....+++++++. ++..+++
T Consensus 129 ~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~ 208 (272)
T 1d2n_A 129 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEAL 208 (272)
T ss_dssp EECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHH
T ss_pred EEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHH
Confidence 99998431 1112223332222 12234456777776644332 11 135688999988 6666665
Q ss_pred HHhhccCCCcccchhHHHHHHHHHHHhCC------ChHHHHHHHhhhcCCCChhHHHHHHhh
Q 048135 284 EKHAFENRDASAHQNLELIHAKVVEKCKG------LPQAAANLGGLLCCKQRDDEWQGILKS 339 (1189)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~g------~Plai~~~g~~L~~~~~~~~w~~~l~~ 339 (1189)
.+.. . .. .+....|++.+.| ..-++.++-..-. ......|+.++..
T Consensus 209 ~~~~----~-~~----~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~~~~~~~~~~~~ 260 (272)
T 1d2n_A 209 ELLG----N-FK----DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MDPEYRVRKFLAL 260 (272)
T ss_dssp HHHT----C-SC----HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SCGGGHHHHHHHH
T ss_pred HhcC----C-CC----HHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hchHHHHHHHHHH
Confidence 5431 1 11 2345678888877 4444444433322 2223455555543
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.41 E-value=0.00017 Score=79.83 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=83.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|++|+||||+|+++++.....++ ..++++. ..+...+...+.. ...+ .+.+.+. +.-+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~-~~~~i~~------~~~~~~~~~~~~~-----~~~~----~~~~~~~-~~~v 101 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGY-RVIYSSA------DDFAQAMVEHLKK-----GTIN----EFRNMYK-SVDL 101 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTC-CEEEEEH------HHHHHHHHHHHHH-----TCHH----HHHHHHH-TCSE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEH------HHHHHHHHHHHHc-----CcHH----HHHHHhc-CCCE
Confidence 4569999999999999999874321111 2344433 2333344433321 1111 1222232 3679
Q ss_pred EEecCCCCCCh--hhHHhhccccCC-CCCCcEEEEEcCCchh---------hhccCCCceEeCCCCChhhHHHHHHHhhc
Q 048135 221 IVLDNVWSKNY--GLWKTLKSPFMA-GTPGSKIIVTTRSVDV---------ALTLGPIDYYNLELLSDDDCWSIFEKHAF 288 (1189)
Q Consensus 221 lvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 288 (1189)
|++||+..-.. ...+.+...+.. ...|.+||+||....- ...+.....+++++ +.++..+++...+.
T Consensus 102 L~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 102 LLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred EEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 99999955321 122233322211 1235678888764321 11122225689999 99999999988875
Q ss_pred cCCCcccchhHHHHHHHHHHHhCCChHH
Q 048135 289 ENRDASAHQNLELIHAKVVEKCKGLPQA 316 (1189)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~c~g~Pla 316 (1189)
..+... + .+....|++++ |..-.
T Consensus 181 ~~~~~l-~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 181 EFNLEL-R---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HTTCCC-C---HHHHHHHHHHC-SSHHH
T ss_pred hcCCCC-C---HHHHHHHHHhC-CCHHH
Confidence 332211 1 34456777888 66543
No 187
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.39 E-value=0.0055 Score=69.29 Aligned_cols=267 Identities=12% Similarity=0.064 Sum_probs=142.5
Q ss_pred cCCCCCCcEEEeccCCCccccccc--CCCCCccEEEEecCCCCCCCccccccCCCccceEEEccCCCcccccccCC-CCC
Q 048135 877 LHGLTSPKKLCIENCQRLVSFQEV--CFLPILGELEIKNCSALKFLPEGMKHNNVCLECLLIEGCNSLKFVVKGQL-LLP 953 (1189)
Q Consensus 877 ~~~l~~L~~L~l~~~~~l~~~~~~--~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~ 953 (1189)
+....+|+.+.+.. .++.++.. ..+.+|+.+.+.. .++.++...+.++ +|+.+.+- ..++.+....+ ..+
T Consensus 42 ~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~--~~l~~I~~~aF~~~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGM--ERVKKFGDYVFQGTD 114 (379)
T ss_dssp GGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEEC--TTCCEECTTTTTTCC
T ss_pred cccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECC--ceeeEeccceeccCC
Confidence 34445677777754 35555442 2367788887764 4677777766554 56666654 23444443322 235
Q ss_pred cceEEeecccCccccccccCCCCCCccchhhhhccccCCCCCccccccccccccC-CCCCCCCCccceEeeccCCCCccc
Q 048135 954 LKKLQIRKCEKLKHLLDDRGHINSTSTSIIKYLYVSYGRSLGENMTWKFEIRKSM-PESPINLECLHQIYIWDCSSFTSF 1032 (1189)
Q Consensus 954 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~ 1032 (1189)
|+.+.+.+. +..+.. -.+.+| ++....+.. .++.+ ...+..+.+++...+.........
T Consensus 115 L~~i~lp~~--~~~i~~---------------~~F~~~-~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~ 174 (379)
T 4h09_A 115 LDDFEFPGA--TTEIGN---------------YIFYNS-SVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVA 174 (379)
T ss_dssp CSEEECCTT--CCEECT---------------TTTTTC-CCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEE
T ss_pred cccccCCCc--cccccc---------------cccccc-eeeeeeccc--eeeccccchhcccccccccccccccceeec
Confidence 666665431 221111 011112 222222211 11222 234556677777776554321111
Q ss_pred CCC-------------CCCCCcCeEEEeccCCCccc-cccccCCCccccccc------------cCCCCCcceeeccCCC
Q 048135 1033 PKG-------------GLPNTLSRISIGKCENLVAL-PDRMHNLSSLQELEI------------CFPTSLTTLTIEDFNL 1086 (1189)
Q Consensus 1033 p~~-------------~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l------------~~~~~L~~L~l~~~~~ 1086 (1189)
... .....+..+.+.. ....+ ...+..+.+|+.+.+ ..|.+|+.+.+.. .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~--~ 250 (379)
T 4h09_A 175 ENYVLYNKNKTILESYPAAKTGTEFTIPS--TVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPK--N 250 (379)
T ss_dssp ETTEEEETTSSEEEECCTTCCCSEEECCT--TCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECT--T
T ss_pred ccceecccccceecccccccccccccccc--ceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCC--C
Confidence 000 0011223332222 11111 122333444444443 3456677666642 3
Q ss_pred cccccccCCCCCCccceEEEcccCCcccCccccccCCCCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCCCCC
Q 048135 1087 YKPLIEWGLHKLTALRNLSIGGCLDAVSFPQEELGMMLPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPKLTS 1166 (1189)
Q Consensus 1087 l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1166 (1189)
++.+....+.++.+|+.+.+.. .+..++... |..+++|+.+.+.++ .++.++...|.++++|+.+.|.. .++.
T Consensus 251 v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~a--F~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~ 323 (379)
T 4h09_A 251 VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLL--CSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKT 323 (379)
T ss_dssp CCEECTTTTTTCTTCCEEEECC--CCSEECTTT--TTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCE
T ss_pred ccEeCccccceeehhccccccc--cceeccccc--ccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccE
Confidence 6666677788899999999865 466666543 567899999999765 67888878899999999999964 3666
Q ss_pred CCC--CCCCCCcceeee
Q 048135 1167 FPE--VGLPSSLLQLYI 1181 (1189)
Q Consensus 1167 lp~--~~~~~sL~~L~i 1181 (1189)
|.. ...+.+|+.+.+
T Consensus 324 I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 324 IQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECTTTTTTCTTCCCCCC
T ss_pred EHHHHhhCCCCCCEEEE
Confidence 654 223455555554
No 188
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=0.00081 Score=75.43 Aligned_cols=169 Identities=11% Similarity=0.086 Sum_probs=92.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC-cC-ceEEEEecCCcCHHHHHHHHHHHccCC-CCCCCChhHHHHHHHHHHccCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG-FN-PKAWVCVSEDFDVLKITKAILESVTSS-PSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
+.|+|..|+||||+|+.+.+...... +. ..+.+..+.......+ ++........ ....... .....-.+++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 134 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFARLTVSKPSKH-----DLENYPCPPY 134 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHHSCCCCCCTT-----HHHHSCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHhhhcccccchh-----hcccCCCCCc
Confidence 56999999999999999887532111 21 1223333332233222 2222111100 0000000 0001112345
Q ss_pred eEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCcccc
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDASAH 296 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~ 296 (1189)
-++++|+++.-.....+.+...+.......++|++|.... +.... .....+++.+++.++..+.+...+...+... +
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i-~ 213 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKC-D 213 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCC-C
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCC-C
Confidence 6999999966555555666655554445677887775443 11111 1124789999999999998888764322111 1
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHH
Q 048135 297 QNLELIHAKVVEKCKGLPQAAANL 320 (1189)
Q Consensus 297 ~~~~~~~~~i~~~c~g~Plai~~~ 320 (1189)
.+....|++.++|.|-.+..+
T Consensus 214 ---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 214 ---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ---HHHHHHHHHHTSSCHHHHHHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHH
Confidence 345678999999999865443
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.00038 Score=82.05 Aligned_cols=167 Identities=17% Similarity=0.132 Sum_probs=88.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHH--HHccC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEK--AIAGQ 217 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~--~l~~~ 217 (1189)
+.+-|+|++|+||||+|+++++... +. .+.+..+...... .....+....... ..........+ ...++
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~---~~-~i~in~s~~~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~ 148 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELG---YD-ILEQNASDVRSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGK 148 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT---CE-EEEECTTSCCCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC---CC-EEEEeCCCcchHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCC
Confidence 4566999999999999999987531 21 2334444433332 2222222221110 00000000000 11356
Q ss_pred ceEEEecCCCCCC---hhhHHhhccccCCCCCCcEEEEEcCCch---hhhccCCCceEeCCCCChhhHHHHHHHhhccCC
Q 048135 218 KFLIVLDNVWSKN---YGLWKTLKSPFMAGTPGSKIIVTTRSVD---VALTLGPIDYYNLELLSDDDCWSIFEKHAFENR 291 (1189)
Q Consensus 218 ~~LlvlDdv~~~~---~~~~~~l~~~l~~~~~gs~iivTtr~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 291 (1189)
+.+||+|+++.-. ...+..+...+... +..||+++.+.. +.........+++++++.++..+.+...+...+
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~ 226 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK 226 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 7899999996532 12234444333322 334666555432 222222235789999999999999888765433
Q ss_pred CcccchhHHHHHHHHHHHhCC-ChHHHHHHH
Q 048135 292 DASAHQNLELIHAKVVEKCKG-LPQAAANLG 321 (1189)
Q Consensus 292 ~~~~~~~~~~~~~~i~~~c~g-~Plai~~~g 321 (1189)
....+ +....|++.++| ++-|+..+.
T Consensus 227 ~~i~~----~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 227 FKLDP----NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CCCCT----THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 22221 235678899999 445555554
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.00074 Score=75.76 Aligned_cols=103 Identities=10% Similarity=0.070 Sum_probs=66.1
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCCc
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRDA 293 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 293 (1189)
+++-++|+|++..-+....+.+...+.....+.++|++|.+.. +.... .....+++.+++.++..+.+.+.+...+..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 3667999999977555555666655544445678888776543 22111 223679999999999999998876433221
Q ss_pred ccchhHHHHHHHHHHHhCCChHHHHHHH
Q 048135 294 SAHQNLELIHAKVVEKCKGLPQAAANLG 321 (1189)
Q Consensus 294 ~~~~~~~~~~~~i~~~c~g~Plai~~~g 321 (1189)
.+. .+....|++.++|.+-.+..+.
T Consensus 213 ~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp ECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 110 1345788899999986655443
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.0089 Score=65.39 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=82.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-++|++|+|||++|+++++... ..-++.++... +... ........+.......-..++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~~~------------l~~~-~~g~~~~~~~~lf~~a~~~~~~ 107 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSSD------------LVSK-WLGESEKLVKNLFQLARENKPS 107 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEECCS------------SCCS-SCCSCHHHHHHHHHHHHHTSSE
T ss_pred ceEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEhHH------------HHhh-hhhHHHHHHHHHHHHHHhcCCc
Confidence 4466999999999999999997431 11222232210 0000 0011112222222222345678
Q ss_pred EEEecCCCCCC-------hh----hHHhhccccC---CCCCCcEEEEEcCCchhhhc---cCCCceEeCCCCChhhHHHH
Q 048135 220 LIVLDNVWSKN-------YG----LWKTLKSPFM---AGTPGSKIIVTTRSVDVALT---LGPIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 220 LlvlDdv~~~~-------~~----~~~~l~~~l~---~~~~gs~iivTtr~~~v~~~---~~~~~~~~l~~L~~~~~~~l 282 (1189)
+|++|+++.-. .. ....+...+. ....+..||.||...+.... -.....+.+...+.++..++
T Consensus 108 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i 187 (322)
T 1xwi_A 108 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAM 187 (322)
T ss_dssp EEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred EEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHH
Confidence 99999995420 00 1112222221 12235556666654432111 02335788888899999999
Q ss_pred HHHhhccCCCcccchhHHHHHHHHHHHhCCC-hHHHHHHH
Q 048135 283 FEKHAFENRDASAHQNLELIHAKVVEKCKGL-PQAAANLG 321 (1189)
Q Consensus 283 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~g 321 (1189)
+...+-....... ......|++.+.|. +-.|..+.
T Consensus 188 l~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 188 FKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 9887632211111 23456788888886 44454443
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.30 E-value=7e-05 Score=74.89 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=62.7
Q ss_pred hhhhhhcCCCcceEEEeccC-CCc-----ccCccccCcccccEEecccccccc-----ccccccCCCCCcEEeccCcccc
Q 048135 515 FLSDLLPKFKKLRVLSLKSY-HII-----ELPNSIGRLMHLRYLDMSNTAISS-----LPESTCSLINLQTLLLRRCFYL 583 (1189)
Q Consensus 515 ~~~~~~~~l~~Lr~L~L~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~i~~-----LP~~i~~L~~L~~L~L~~~~~l 583 (1189)
.+...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.|.. +.+.+...++|++|+|++| .+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 34456677788888888888 664 245566667788888888887762 4555666778888888887 34
Q ss_pred cc-----CchhhhccccCCcccc--cCCc
Q 048135 584 MK-----WPSKVMNLINLRHLDI--TDVH 605 (1189)
Q Consensus 584 ~~-----lp~~i~~L~~L~~L~l--~~~~ 605 (1189)
.. +...+...++|++|++ ++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 33 4455666777888888 5555
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.30 E-value=0.00095 Score=75.32 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=56.4
Q ss_pred eEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC-c------------hhh-hccCCCceEeCCCCChhhHHHHHH
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS-V------------DVA-LTLGPIDYYNLELLSDDDCWSIFE 284 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~------------~v~-~~~~~~~~~~l~~L~~~~~~~lf~ 284 (1189)
.+|++|+++.-..+..+.+...+...... .++++|.. . .+. ....-...+++.+++.++..+++.
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 269 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILR 269 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHH
Confidence 59999999776556666666655444333 34444431 1 010 011112458999999999999998
Q ss_pred HhhccCCCcccchhHHHHHHHHHHHhC-CChHHHH
Q 048135 285 KHAFENRDASAHQNLELIHAKVVEKCK-GLPQAAA 318 (1189)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~i~~~c~-g~Plai~ 318 (1189)
..+-..+... . .+....|++.+. |.|-.+.
T Consensus 270 ~~~~~~~~~~-~---~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 270 IRCEEEDVEM-S---EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHTTCCB-C---HHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHcCCCC-C---HHHHHHHHHHhcCCCHHHHH
Confidence 8764322211 1 345677888887 7765544
No 194
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.20 E-value=0.00019 Score=71.54 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCcccc-CcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVE-GFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
+.+.|+|..|+||||||+++++..... ++. ++++ +..++...+......... .... +.+. +.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~-----~~~~----~~~~-~~ 101 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD-----TKFL----KTVL-NS 101 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC-----SHHH----HHHH-TC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH-----HHHH----HHhc-CC
Confidence 345699999999999999998753311 122 2333 344444444443321111 1122 2222 45
Q ss_pred eEEEecCCCCCChhhHH--hhccccCCC-CCCcEEEEEcCCc
Q 048135 219 FLIVLDNVWSKNYGLWK--TLKSPFMAG-TPGSKIIVTTRSV 257 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 257 (1189)
-+|||||++....+.|. .+...+... ..|..||+||...
T Consensus 102 ~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 102 PVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp SEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 68999999743323333 222222111 2467888888743
No 195
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.16 E-value=0.00036 Score=69.71 Aligned_cols=113 Identities=13% Similarity=-0.015 Sum_probs=82.2
Q ss_pred cCCCCcceEEecCcc-CCCcccccchhhhhhhhhcCCCcceEEEeccCCCcc-----cCccccCcccccEEecccccccc
Q 048135 488 FPEVECLRTFLPMLK-GDHTCARFISNMFLSDLLPKFKKLRVLSLKSYHIIE-----LPNSIGRLMHLRYLDMSNTAISS 561 (1189)
Q Consensus 488 ~~~~~~Lr~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~~ 561 (1189)
+...+.|++|....+ .. .......+...+...+.|++|+|++|.+.. +.+.+...+.|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i----~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNI----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTC----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCC----CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 345667777766543 21 111123344567778899999999999863 45566677899999999998874
Q ss_pred -----ccccccCCCCCcEEec--cCcccccc-----CchhhhccccCCcccccCCc
Q 048135 562 -----LPESTCSLINLQTLLL--RRCFYLMK-----WPSKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 562 -----LP~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 605 (1189)
+.+.+...++|++|+| ++| .+.. +...+...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 6778888899999999 777 4433 44556677899999999886
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.16 E-value=0.0035 Score=69.75 Aligned_cols=158 Identities=15% Similarity=0.031 Sum_probs=81.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-|+|++|+|||++|+++++..... | +.+.. .++ ..... ......+...+...-..++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~-~---~~v~~------~~l----~~~~~-----g~~~~~~~~~f~~a~~~~~~ 145 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANST-F---FSVSS------SDL----VSKWM-----GESEKLVKQLFAMARENKPS 145 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCE-E---EEEEH------HHH----HSCC--------CHHHHHHHHHHHHHTSSE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCC-E---EEeeH------HHH----hhhhc-----chHHHHHHHHHHHHHHcCCe
Confidence 446699999999999999999753211 1 12221 111 11110 01111122222222345778
Q ss_pred EEEecCCCCCCh-----------hhHHhhccccC---CCCCCcEEEEEcCCchhhh---ccCCCceEeCCCCChhhHHHH
Q 048135 220 LIVLDNVWSKNY-----------GLWKTLKSPFM---AGTPGSKIIVTTRSVDVAL---TLGPIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 220 LlvlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~iivTtr~~~v~~---~~~~~~~~~l~~L~~~~~~~l 282 (1189)
+|+||+++.-.. .....+...+. ....+..||.||...+... .-.....+.+...+.++..++
T Consensus 146 vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i 225 (355)
T 2qp9_X 146 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTM 225 (355)
T ss_dssp EEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred EEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHH
Confidence 999999954211 01222222221 1224556666776543211 112335788898999999999
Q ss_pred HHHhhccCCCcccchhHHHHHHHHHHHhCCC-hHHHHHH
Q 048135 283 FEKHAFENRDASAHQNLELIHAKVVEKCKGL-PQAAANL 320 (1189)
Q Consensus 283 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 320 (1189)
+...+........ ......|++.+.|. +-.|..+
T Consensus 226 l~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 226 FEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp HHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 9887643221111 22346788888884 4444443
No 197
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.15 E-value=0.009 Score=65.55 Aligned_cols=158 Identities=14% Similarity=0.027 Sum_probs=82.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHH-HHHHHHHccCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQ-IQLEKAIAGQK 218 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~ 218 (1189)
+.+-++|.+|+|||++|+++++..... | +.|.. ..+ ..... ...+... ......-..++
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~-~---~~v~~------~~l----~~~~~------g~~~~~~~~~f~~a~~~~~ 111 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANST-F---FSVSS------SDL----VSKWM------GESEKLVKQLFAMARENKP 111 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCE-E---EEEEH------HHH----HTTTG------GGHHHHHHHHHHHHHHTSS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCC-E---EEEch------HHH----hhccc------chHHHHHHHHHHHHHhcCC
Confidence 345699999999999999998742211 1 22221 111 11100 1111222 22222234566
Q ss_pred eEEEecCCCCCCh-----------hhHHhhccccC---CCCCCcEEEEEcCCchhhhc---cCCCceEeCCCCChhhHHH
Q 048135 219 FLIVLDNVWSKNY-----------GLWKTLKSPFM---AGTPGSKIIVTTRSVDVALT---LGPIDYYNLELLSDDDCWS 281 (1189)
Q Consensus 219 ~LlvlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~iivTtr~~~v~~~---~~~~~~~~l~~L~~~~~~~ 281 (1189)
.+|+||+++.-.. .....+...+. ....+..||.||...+.... -.....+.+...+.++-.+
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~ 191 (322)
T 3eie_A 112 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 191 (322)
T ss_dssp EEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHH
T ss_pred eEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHH
Confidence 8999999953210 11222222221 22345666667765433211 0123567888899999999
Q ss_pred HHHHhhccCCCcccchhHHHHHHHHHHHhCCC-hHHHHHHH
Q 048135 282 IFEKHAFENRDASAHQNLELIHAKVVEKCKGL-PQAAANLG 321 (1189)
Q Consensus 282 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~g 321 (1189)
++...+........ ......|++.+.|. +-.|..+.
T Consensus 192 il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 192 MFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 99988743221111 22346788888774 44444433
No 198
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.10 E-value=0.0095 Score=66.37 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=81.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHH-HHHHHHHccCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQ-IQLEKAIAGQK 218 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~ 218 (1189)
+.+.|+|..|+|||++|+++++.... ..+.+..+.-.. .. ........ ..+...-..++
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~~~----~~~~i~~~~l~~--------------~~--~g~~~~~~~~~~~~a~~~~~ 177 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQSGA----TFFSISASSLTS--------------KW--VGEGEKMVRALFAVARCQQP 177 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHTTC----EEEEEEGGGGCC--------------SS--TTHHHHHHHHHHHHHHHTCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCC----eEEEEehHHhhc--------------cc--cchHHHHHHHHHHHHHhcCC
Confidence 44669999999999999999874221 122333322111 00 00111111 12222224567
Q ss_pred eEEEecCCCCC-----------ChhhHHhhccccCC----CCCCcEEEEEcCCchhh-hcc--CCCceEeCCCCChhhHH
Q 048135 219 FLIVLDNVWSK-----------NYGLWKTLKSPFMA----GTPGSKIIVTTRSVDVA-LTL--GPIDYYNLELLSDDDCW 280 (1189)
Q Consensus 219 ~LlvlDdv~~~-----------~~~~~~~l~~~l~~----~~~gs~iivTtr~~~v~-~~~--~~~~~~~l~~L~~~~~~ 280 (1189)
.+|+||+++.- ....+..+...+.. ...+..||.||...... ... .....+.+...+.++..
T Consensus 178 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~ 257 (357)
T 3d8b_A 178 AVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARK 257 (357)
T ss_dssp EEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHH
T ss_pred eEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHH
Confidence 89999999321 00112233222221 12344566667543221 111 22246788888999988
Q ss_pred HHHHHhhccCCCcccchhHHHHHHHHHHHhCC-ChHHHHHHH
Q 048135 281 SIFEKHAFENRDASAHQNLELIHAKVVEKCKG-LPQAAANLG 321 (1189)
Q Consensus 281 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~g 321 (1189)
+++...+........ .+....|++.+.| .+-+|..+.
T Consensus 258 ~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 258 QIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 888877632211111 2345678888888 455555543
No 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.07 E-value=0.00027 Score=72.02 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=52.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+.|+|.+|+||||+|+++++....+ ...++|+++ ..+...+...... ........ .+.+ .-
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~----~~~~-~~ 117 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYV------PELFRELKHSLQD-----QTMNEKLD----YIKK-VP 117 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEH------HHHHHHHHHC--------CCCHHHHH----HHHH-SS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEh------HHHHHHHHHHhcc-----chHHHHHH----HhcC-CC
Confidence 345699999999999999998754322 334556644 2444444433221 11222222 2222 23
Q ss_pred EEEecCCCCCChhhHHh--hcc-ccCCC-CCCcEEEEEcCC
Q 048135 220 LIVLDNVWSKNYGLWKT--LKS-PFMAG-TPGSKIIVTTRS 256 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 256 (1189)
+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 118 ~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 118 VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp EEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 99999996643333322 111 11111 235578888874
No 200
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.05 E-value=0.00023 Score=80.00 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=44.4
Q ss_pred CCcceEEEeccCCCcc-----cCccccCcccccEEecccccccc-----ccccccCCCCCcEEeccCcccccc-----Cc
Q 048135 523 FKKLRVLSLKSYHIIE-----LPNSIGRLMHLRYLDMSNTAISS-----LPESTCSLINLQTLLLRRCFYLMK-----WP 587 (1189)
Q Consensus 523 l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~~-----LP~~i~~L~~L~~L~L~~~~~l~~-----lp 587 (1189)
.+.|++|+|++|.++. ++..+...++|++|+|++|.|.. ++..+...++|++|+|++| .++. ++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~ 232 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALA 232 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHH
Confidence 4556666666666542 33444555566666666665542 3444555556666666665 3332 23
Q ss_pred hhhhccccCCcccccCCc
Q 048135 588 SKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 588 ~~i~~L~~L~~L~l~~~~ 605 (1189)
..+...++|++|++++|.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHCSSCCEEECTTSS
T ss_pred HHHHhCCCCCEEeccCCC
Confidence 334445666666666654
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.05 E-value=0.00091 Score=63.63 Aligned_cols=90 Identities=16% Similarity=-0.058 Sum_probs=52.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+-|+|..|+|||++|+++++.....+... + +..+...+. .... ..+.. .+.-.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~-v-~~~~~~~~~------------------~~~~---~~~~~---a~~g~ 79 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEF-V-YRELTPDNA------------------PQLN---DFIAL---AQGGT 79 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCC-E-EEECCTTTS------------------SCHH---HHHHH---HTTSC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCE-E-EECCCCCcc------------------hhhh---cHHHH---cCCcE
Confidence 356999999999999999987532222222 2 544432211 0111 11111 13457
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCC
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRS 256 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 256 (1189)
|++|+++.-.......+...+.......+||.||..
T Consensus 80 l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 80 LVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 899999776555555665555444445678887764
No 202
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.03 E-value=0.00046 Score=69.58 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|.+|+|||++|+++++.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999998874
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.98 E-value=0.0023 Score=70.65 Aligned_cols=147 Identities=20% Similarity=0.143 Sum_probs=79.8
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-----ccC
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI-----AGQ 217 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~ 217 (1189)
-+.|..|+|||++|+++.+.... ..+.+..+. ..... .+ ..+.+.. .++
T Consensus 52 L~~G~~G~GKT~la~~la~~l~~----~~~~i~~~~-~~~~~-i~--------------------~~~~~~~~~~~~~~~ 105 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCHDVNA----DMMFVNGSD-CKIDF-VR--------------------GPLTNFASAASFDGR 105 (324)
T ss_dssp EECSSTTSSHHHHHHHHHHHTTE----EEEEEETTT-CCHHH-HH--------------------THHHHHHHBCCCSSC
T ss_pred EeeCcCCCCHHHHHHHHHHHhCC----CEEEEcccc-cCHHH-HH--------------------HHHHHHHhhcccCCC
Confidence 46678999999999999874321 123343332 12211 11 1122221 236
Q ss_pred ceEEEecCCCCCC-hhhHHhhccccCCCCCCcEEEEEcCCchh-hhcc-CCCceEeCCCCChhhHHHH-------HHHhh
Q 048135 218 KFLIVLDNVWSKN-YGLWKTLKSPFMAGTPGSKIIVTTRSVDV-ALTL-GPIDYYNLELLSDDDCWSI-------FEKHA 287 (1189)
Q Consensus 218 ~~LlvlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~-~~~~~~~l~~L~~~~~~~l-------f~~~a 287 (1189)
+-++|+||++.-. .+..+.+...+.....+.++|+||....- .... .....+++++++.++-.++ +...+
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~ 185 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEIC 185 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999996544 44555555544433346688888876431 1110 1124789999998874333 22222
Q ss_pred ccCCCcccchhHHHHHHHHHHHhCCChHHHH
Q 048135 288 FENRDASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
...+....+ .+....+++.++|.+-.+.
T Consensus 186 ~~~~~~~~~---~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 186 KHEGIAIAD---MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHTCCBSC---HHHHHHHHHHTCSCTTHHH
T ss_pred HHcCCCCCc---HHHHHHHHHhCCCCHHHHH
Confidence 211111111 2456778888988775433
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.95 E-value=0.0087 Score=68.74 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=82.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-|+|++|+|||++|+++++... ..-++.++.. + +. ....+. ....... .+...-..++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~v~~~-~---l~----~~~~g~--~~~~~~~---~f~~a~~~~~~ 229 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSS-D---LV----SKWLGE--SEKLVKN---LFQLARENKPS 229 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEEECCC-------------------CCCTHHH---HHHHHHHSCSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEEEeHH-H---HH----hhhcch--HHHHHHH---HHHHHHHcCCe
Confidence 4466999999999999999997431 1223333322 1 11 111110 1111222 22222245678
Q ss_pred EEEecCCCCCC-----------hhhHHhhccccCC---CCCCcEEEEEcCCchhhhc---cCCCceEeCCCCChhhHHHH
Q 048135 220 LIVLDNVWSKN-----------YGLWKTLKSPFMA---GTPGSKIIVTTRSVDVALT---LGPIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 220 LlvlDdv~~~~-----------~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~---~~~~~~~~l~~L~~~~~~~l 282 (1189)
+|+||+++.-. ......+...+.. ...+..||.||........ -.....+.+...+.++..++
T Consensus 230 vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i 309 (444)
T 2zan_A 230 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAM 309 (444)
T ss_dssp EEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHH
T ss_pred EEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHH
Confidence 99999996421 0122233333322 2345667767765432211 12235778888888888889
Q ss_pred HHHhhccCCCcccchhHHHHHHHHHHHhCCC-hHHHHHH
Q 048135 283 FEKHAFENRDASAHQNLELIHAKVVEKCKGL-PQAAANL 320 (1189)
Q Consensus 283 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 320 (1189)
|..++........ ......|++.+.|. +-.|..+
T Consensus 310 l~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 310 FRLHLGSTQNSLT----EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp HHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 9887632211111 23346788888884 4444433
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.93 E-value=0.017 Score=62.65 Aligned_cols=157 Identities=15% Similarity=0.051 Sum_probs=80.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHH-HHHHHHccCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQI-QLEKAIAGQK 218 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~ 218 (1189)
+.+.|+|++|+||||+|+++++..... | +.+..+.-.. .. ..+...... .+......++
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~~~-~---~~i~~~~l~~--------------~~--~~~~~~~~~~~~~~~~~~~~ 114 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECSAT-F---LNISAASLTS--------------KY--VGDGEKLVRALFAVARHMQP 114 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTCE-E---EEEESTTTSS--------------SS--CSCHHHHHHHHHHHHHHTCS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCC-e---EEeeHHHHhh--------------cc--cchHHHHHHHHHHHHHHcCC
Confidence 445699999999999999998743211 1 2233322110 00 011122222 2222334567
Q ss_pred eEEEecCCCCCCh-----------hhHHhhccc---cCCC--CCCcEEEEEcCCchhhhc-c--CCCceEeCCCCChhhH
Q 048135 219 FLIVLDNVWSKNY-----------GLWKTLKSP---FMAG--TPGSKIIVTTRSVDVALT-L--GPIDYYNLELLSDDDC 279 (1189)
Q Consensus 219 ~LlvlDdv~~~~~-----------~~~~~l~~~---l~~~--~~gs~iivTtr~~~v~~~-~--~~~~~~~l~~L~~~~~ 279 (1189)
.+|++|+++.-.. .....+... ++.. +.+..||.||...+.... . .....+.+...+.++.
T Consensus 115 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 115 SIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTR 194 (297)
T ss_dssp EEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHH
T ss_pred cEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHH
Confidence 8999999954210 111112111 1111 234566667775432111 0 1225677888888888
Q ss_pred HHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChH-HHHHH
Q 048135 280 WSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQ-AAANL 320 (1189)
Q Consensus 280 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 320 (1189)
.+++...+........ .+....+++.+.|.+- ++..+
T Consensus 195 ~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 195 ELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp HHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 8888776533221111 2345678888888775 44443
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.88 E-value=0.0097 Score=64.52 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=80.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+.|+|++|+|||++|+++++.... -++.+ +..++.... .+.. ...+...+.......+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~~------~~i~v----~~~~l~~~~----~g~~-----~~~~~~~f~~a~~~~p~ 110 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQA------NFISI----KGPELLTMW----FGES-----EANVREIFDKARQAAPC 110 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTC------EEEEE----CHHHHHHHH----HTTC-----TTHHHHHHHHHHHTCSE
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhCC------CEEEE----EhHHHHhhh----cCch-----HHHHHHHHHHHHhcCCe
Confidence 34569999999999999999974321 12222 222332222 1111 12223333344445678
Q ss_pred EEEecCCCCCC--------------hhhHHhhccccCC--CCCCcEEEEEcCCchhhhc--c---CCCceEeCCCCChhh
Q 048135 220 LIVLDNVWSKN--------------YGLWKTLKSPFMA--GTPGSKIIVTTRSVDVALT--L---GPIDYYNLELLSDDD 278 (1189)
Q Consensus 220 LlvlDdv~~~~--------------~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~~ 278 (1189)
++++|+++.-. ......+...+.. ...+..||.||...+.... . .....+.+...+.++
T Consensus 111 il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 190 (301)
T 3cf0_A 111 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190 (301)
T ss_dssp EEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred EEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHH
Confidence 99999995310 0012223222211 1235677777765533221 1 123578899999999
Q ss_pred HHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChH
Q 048135 279 CWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQ 315 (1189)
Q Consensus 279 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 315 (1189)
-.+++....-... ......+ ..+++.+.|.|-
T Consensus 191 r~~il~~~l~~~~-~~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 191 RVAILKANLRKSP-VAKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp HHHHHHHHHTTSC-BCSSCCH----HHHHHTCSSCCH
T ss_pred HHHHHHHHHccCC-CCccchH----HHHHHHcCCCCH
Confidence 8888877653221 1111222 345556666654
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0064 Score=67.19 Aligned_cols=151 Identities=23% Similarity=0.139 Sum_probs=80.1
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
++-+-++|++|.|||.+|+++++..... | +.|..+.-.+ . .-......+.......-+..+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~-f---~~v~~s~l~s--------------k-~vGese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCK-F---IRVSGAELVQ--------------K-YIGEGSRMVRELFVMAREHAP 242 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCE-E---EEEEGGGGSC--------------S-STTHHHHHHHHHHHHHHHTCS
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCC-c---eEEEhHHhhc--------------c-ccchHHHHHHHHHHHHHHhCC
Confidence 3456699999999999999999853322 1 2333221110 0 000011111112222224568
Q ss_pred eEEEecCCCCCC--------h------hhHHhhccccCC--CCCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChh
Q 048135 219 FLIVLDNVWSKN--------Y------GLWKTLKSPFMA--GTPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDD 277 (1189)
Q Consensus 219 ~LlvlDdv~~~~--------~------~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~ 277 (1189)
++|++|+++.-. . .....+...+.. ...+-.||.||...+..... ..+..++++..+.+
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~ 322 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHH
Confidence 999999996410 0 011223222222 23345567777765543221 23468899988999
Q ss_pred hHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCC
Q 048135 278 DCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGL 313 (1189)
Q Consensus 278 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 313 (1189)
+-.++|..+.-+-. .....++ .++++.+.|.
T Consensus 323 ~R~~Il~~~~~~~~-l~~dvdl----~~lA~~t~G~ 353 (405)
T 4b4t_J 323 ARAEILRIHSRKMN-LTRGINL----RKVAEKMNGC 353 (405)
T ss_dssp HHHHHHHHHHTTSB-CCSSCCH----HHHHHHCCSC
T ss_pred HHHHHHHHHhcCCC-CCccCCH----HHHHHHCCCC
Confidence 88999987753211 1112233 4566777764
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.83 E-value=0.023 Score=64.13 Aligned_cols=158 Identities=17% Similarity=0.092 Sum_probs=79.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-|+|..|+|||++|+++++..... .+.+..+.-.+. . . ......+...+...-.....
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~--~--------~-----g~~~~~~~~~~~~a~~~~~~ 209 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLTSK--Y--------V-----GEGEKLVRALFAVARELQPS 209 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC----------------------CHHHHHHHHHHHHHSSSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhhcc--c--------c-----chHHHHHHHHHHHHHhcCCe
Confidence 445699999999999999998742211 122222221110 0 0 00111122222222234567
Q ss_pred EEEecCCCCC-----------ChhhHHhhccccC----CCCCCcEEEEEcCCchhhh-cc--CCCceEeCCCCChhhHHH
Q 048135 220 LIVLDNVWSK-----------NYGLWKTLKSPFM----AGTPGSKIIVTTRSVDVAL-TL--GPIDYYNLELLSDDDCWS 281 (1189)
Q Consensus 220 LlvlDdv~~~-----------~~~~~~~l~~~l~----~~~~gs~iivTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~ 281 (1189)
+|+||+++.- .......+...+. .......||.||...+... .. .....+.+...+.++..+
T Consensus 210 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~ 289 (389)
T 3vfd_A 210 IIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289 (389)
T ss_dssp EEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred EEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHH
Confidence 9999999431 0011112222111 1122345665665432211 11 122468889999999999
Q ss_pred HHHHhhccCCCcccchhHHHHHHHHHHHhCCChH-HHHHH
Q 048135 282 IFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQ-AAANL 320 (1189)
Q Consensus 282 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 320 (1189)
++...+-....... .+....+++.+.|..- +|..+
T Consensus 290 il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 290 LLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp HHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 99887643222111 2345678888888544 55444
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.0066 Score=67.33 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=85.2
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC-ceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH------
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN-PKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI------ 214 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l------ 214 (1189)
+.++|+.|+||||+|+.+........+. ...-+..+.... .+.+...+....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~---------------------~~~ir~~i~~~~~~~~~~ 107 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG---------------------IDVVRNQIKDFASTRQIF 107 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS---------------------HHHHHTHHHHHHHBCCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc---------------------HHHHHHHHHHHHhhcccC
Confidence 4589999999999999988642211111 111122222111 122222222221
Q ss_pred ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch-hhhc-cCCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 215 AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD-VALT-LGPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
.+.+-++|+|+++.-.....+.+...+.......++|++|.... +... ......+++.+++.++..+.+...+-..+-
T Consensus 108 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (340)
T 1sxj_C 108 SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKL 187 (340)
T ss_dssp SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC
Confidence 13467899999965444555666555544445667777775432 1111 112247899999999988887766522111
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
. .. .+..+.+++.++|.+--+.
T Consensus 188 ~-i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 188 K-LS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp C-BC---HHHHHHHHHHHTTCHHHHH
T ss_pred C-CC---HHHHHHHHHHcCCCHHHHH
Confidence 1 11 2356778899999886443
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0043 Score=69.68 Aligned_cols=178 Identities=20% Similarity=0.125 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcc---ccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC
Q 048135 102 GMKYKIKSITCRLEEICKQRVDL---GLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE 178 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~ 178 (1189)
|++...+++++.+.--......| |+ ..+|-+-++|++|.|||++|+++++..... .+.|..+.
T Consensus 176 Gl~~~k~~l~e~v~~pl~~p~~~~~~g~----------~~prGiLL~GPPGtGKT~lakAiA~~~~~~----~~~v~~~~ 241 (428)
T 4b4t_K 176 GLDMQKQEIREAVELPLVQADLYEQIGI----------DPPRGVLLYGPPGTGKTMLVKAVANSTKAA----FIRVNGSE 241 (428)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCC----------CCCCEEEEESCTTTTHHHHHHHHHHHHTCE----EEEEEGGG
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCC----------CCCceEEEECCCCCCHHHHHHHHHHHhCCC----eEEEecch
Confidence 55666666666655433333323 22 234456699999999999999999853322 22333322
Q ss_pred CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEEecCCCCC----------Ch----hhHHhhccccC--
Q 048135 179 DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIVLDNVWSK----------NY----GLWKTLKSPFM-- 242 (1189)
Q Consensus 179 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------~~----~~~~~l~~~l~-- 242 (1189)
-.+ . .-......+.......-...+.++++|+++.- .. ....++...+.
T Consensus 242 l~~--------------~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 242 FVH--------------K-YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp TCC--------------S-SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred hhc--------------c-ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 110 0 00011111112222223456889999998420 00 01222222222
Q ss_pred CCCCCcEEEEEcCCchhhhcc-----CCCceEeCCCCCh-hhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCC
Q 048135 243 AGTPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSD-DDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGL 313 (1189)
Q Consensus 243 ~~~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 313 (1189)
....|-.||.||...+..... ..+..+++..+.+ ++-.++|..+.-+ .......++ ..+++.+.|.
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCH----HHHHHHTTTC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCH----HHHHHHCCCC
Confidence 122355677788765433211 1224677766654 4455566665422 111122233 4566666664
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0086 Score=67.39 Aligned_cols=178 Identities=18% Similarity=0.146 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcc---ccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC
Q 048135 102 GMKYKIKSITCRLEEICKQRVDL---GLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE 178 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~ 178 (1189)
++...++++++.+.--......| ++ ..++-+-++|++|.|||++|+++++..... .+.|..+.
T Consensus 185 Gl~~~k~~l~e~v~~pl~~p~~f~~~g~----------~~prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~ 250 (437)
T 4b4t_L 185 GLTEQIRELREVIELPLKNPEIFQRVGI----------KPPKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASG 250 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCC----------CCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGG
T ss_pred ChHHHHHHHHHHHHHHHhCHHHHHhCCC----------CCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhh
Confidence 45666666666655433332222 32 223446699999999999999999853322 12333322
Q ss_pred CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEEEecCCCCCC-----------h---hhHHhhccccCC-
Q 048135 179 DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLIVLDNVWSKN-----------Y---GLWKTLKSPFMA- 243 (1189)
Q Consensus 179 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------~---~~~~~l~~~l~~- 243 (1189)
-.+ . .-......+.......-...+++|++|+++.-. . .....+...+..
T Consensus 251 l~s--------------k-~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 251 IVD--------------K-YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp TCC--------------S-SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred hcc--------------c-cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 110 0 000011111122222234678999999996410 0 012223332221
Q ss_pred -CCCCcEEEEEcCCchhhhcc--C---CCceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCC
Q 048135 244 -GTPGSKIIVTTRSVDVALTL--G---PIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGL 313 (1189)
Q Consensus 244 -~~~gs~iivTtr~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 313 (1189)
...+..||.||...+..... . .+..+++...+.++-.++|..+.-+-. .....++ ..+++.+.|.
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK-KTGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC-BCSCCCH----HHHHHTCCSC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHhCCCC
Confidence 22355677788766543321 1 235688888888888888887753221 1112233 4566677664
No 212
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.0047 Score=66.65 Aligned_cols=127 Identities=8% Similarity=0.008 Sum_probs=78.9
Q ss_pred eEEccCCCcHHHHHHHHhcCcc-cc-CcCceEEEEecC-CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 143 TLVGMGGIGKTTLARLVYNDKE-VE-GFNPKAWVCVSE-DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~-~~-~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
-++|+.|+||||+|+.+.+... .. ......++..+. ...+..+ +++.+.+.... ..+++-
T Consensus 22 Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p----------------~~~~~k 84 (305)
T 2gno_A 22 LINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSP----------------ELYTRK 84 (305)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCC----------------SSSSSE
T ss_pred EEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhcc----------------ccCCce
Confidence 3899999999999999876311 11 122233443322 2222222 22333322111 024566
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCc-hhhhccCCCceEeCCCCChhhHHHHHHHhh
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSV-DVALTLGPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
++|+|+++.-.....+.+...+....+.+.+|++|.+. .+...+... .++++++++++..+.+.+.+
T Consensus 85 vviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 85 YVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred EEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 89999997766677777877776665677877776544 344444444 89999999999999887765
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.60 E-value=0.00054 Score=65.30 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=24.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEec
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVS 177 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~ 177 (1189)
.+.|+|..|+|||||++.+++.....++. ++++...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~-~~~~~~~ 73 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKN-AAYIDAA 73 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCC-EEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCc-EEEEcHH
Confidence 45699999999999999998743322222 4555543
No 214
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0096 Score=66.92 Aligned_cols=151 Identities=16% Similarity=0.089 Sum_probs=77.3
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
++-+-++|++|.|||.+|+++++..... .+.|..+.-.+ . .-......+.......-...+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~--------------~-~vGese~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQ--------------M-YIGEGAKLVRDAFALAKEKAP 275 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCS--------------S-CSSHHHHHHHHHHHHHHHHCS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhh--------------c-ccchHHHHHHHHHHHHHhcCC
Confidence 3456699999999999999999853322 12233221100 0 000001111111122223568
Q ss_pred eEEEecCCCCC-------Ch---h----hHHhhccccCCC--CCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChh
Q 048135 219 FLIVLDNVWSK-------NY---G----LWKTLKSPFMAG--TPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDD 277 (1189)
Q Consensus 219 ~LlvlDdv~~~-------~~---~----~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~ 277 (1189)
++|++|+++.- .. . ....+...+... ..+-.||.||...+..... ..+..++++..+.+
T Consensus 276 ~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~ 355 (434)
T 4b4t_M 276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED 355 (434)
T ss_dssp EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHH
T ss_pred eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHH
Confidence 89999998430 00 0 111233223222 2344566688766544321 12357888888888
Q ss_pred hHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCC
Q 048135 278 DCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGL 313 (1189)
Q Consensus 278 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 313 (1189)
+..++|..+.-+-. ....-++ ..|++.+.|.
T Consensus 356 ~R~~Il~~~~~~~~-~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 356 SRAQILQIHSRKMT-TDDDINW----QELARSTDEF 386 (434)
T ss_dssp HHHHHHHHHHHHSC-BCSCCCH----HHHHHHCSSC
T ss_pred HHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCC
Confidence 88888877653221 1111233 4566677664
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.014 Score=64.65 Aligned_cols=177 Identities=19% Similarity=0.132 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcc---ccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC
Q 048135 102 GMKYKIKSITCRLEEICKQRVDL---GLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE 178 (1189)
Q Consensus 102 ~~~~~i~~i~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~ 178 (1189)
+++..++++++.+.--......| ++ ..++-+-++|++|.|||.+|+++++..... | +.+..+.
T Consensus 186 Gld~~k~~L~e~v~~Pl~~pe~f~~~Gi----------~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-f---i~v~~s~ 251 (437)
T 4b4t_I 186 GLESQIQEIKESVELPLTHPELYEEMGI----------KPPKGVILYGAPGTGKTLLAKAVANQTSAT-F---LRIVGSE 251 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCCHHHHHHTC----------CCCSEEEEESSTTTTHHHHHHHHHHHHTCE-E---EEEESGG
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCC----------CCCCCCceECCCCchHHHHHHHHHHHhCCC-E---EEEEHHH
Confidence 45666666666665433222222 22 223456699999999999999999853322 1 2222221
Q ss_pred CcCHHHHHHHHHHHccCCCCCCCChhHHH-HHHHHHHccCceEEEecCCCCCC----------h----hhHHhhccccC-
Q 048135 179 DFDVLKITKAILESVTSSPSNLKDLNQVQ-IQLEKAIAGQKFLIVLDNVWSKN----------Y----GLWKTLKSPFM- 242 (1189)
Q Consensus 179 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~~----------~----~~~~~l~~~l~- 242 (1189)
-. .. . ..+.+... ......-+..+++|++|+++.-. . .....+...+.
T Consensus 252 l~--------------sk-~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 252 LI--------------QK-Y-LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp GC--------------CS-S-SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred hh--------------hc-c-CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 10 00 0 00111111 11222224568999999985310 0 01112222222
Q ss_pred -CCCCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCC
Q 048135 243 -AGTPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGL 313 (1189)
Q Consensus 243 -~~~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 313 (1189)
....+..||.||...+..... ..+..+++...+.++-.++|..+.-+- ......++ ..+++.+.|.
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCCH----HHHHHHCCSC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCCH----HHHHHhCCCC
Confidence 122345667777766554322 122467888888888888998776322 11122233 4566666664
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.38 E-value=0.0092 Score=68.98 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=81.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+-|+|.+|+|||++|+++.+..... | +.+.. . ++...+. ..........+.....+++.
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~-f---v~vn~------~----~l~~~~~-----g~~~~~~~~~f~~A~~~~p~ 299 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAF-F---FLING------P----EIMSKLA-----GESESNLRKAFEEAEKNAPA 299 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSE-E---EEEEH------H----HHHTSCT-----THHHHHHHHHHHHHHHTCSE
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCC-E---EEEEc------h----Hhhhhhc-----chhHHHHHHHHHHHHhcCCc
Confidence 345699999999999999998742111 2 22221 1 1111111 11112223334444456778
Q ss_pred EEEecCCCCC--------C---hhhHHhhccccCC--CCCCcEEEEEcCCchh-hhcc----CCCceEeCCCCChhhHHH
Q 048135 220 LIVLDNVWSK--------N---YGLWKTLKSPFMA--GTPGSKIIVTTRSVDV-ALTL----GPIDYYNLELLSDDDCWS 281 (1189)
Q Consensus 220 LlvlDdv~~~--------~---~~~~~~l~~~l~~--~~~gs~iivTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~ 281 (1189)
+|+||+++.- . ......+...+.. ...+.+||.||...+. .... .....+.+...+.++-.+
T Consensus 300 iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~ 379 (489)
T 3hu3_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (489)
T ss_dssp EEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred EEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHH
Confidence 9999999320 0 0112223222221 1234566667765432 1111 223468899999999999
Q ss_pred HHHHhhccCCCcccchhHHHHHHHHHHHhCCC-hHHHHH
Q 048135 282 IFEKHAFENRDASAHQNLELIHAKVVEKCKGL-PQAAAN 319 (1189)
Q Consensus 282 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~ 319 (1189)
++..++-... ......+ .++++.+.|. +-.+..
T Consensus 380 IL~~~~~~~~-l~~~~~l----~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 380 ILQIHTKNMK-LADDVDL----EQVANETHGHVGADLAA 413 (489)
T ss_dssp HHHHHTTTSC-BCTTCCH----HHHHHTCTTCCHHHHHH
T ss_pred HHHHHHhcCC-CcchhhH----HHHHHHccCCcHHHHHH
Confidence 9988763221 1111223 4566667664 444443
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.016 Score=64.93 Aligned_cols=151 Identities=18% Similarity=0.097 Sum_probs=78.3
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
++-+-++|++|.|||++|+++++..... | +.|..+.-.+ . .-......+.......-...+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~-f---i~vs~s~L~s--------------k-~vGesek~ir~lF~~Ar~~aP 303 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDAT-F---IRVIGSELVQ--------------K-YVGEGARMVRELFEMARTKKA 303 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCE-E---EEEEGGGGCC--------------C-SSSHHHHHHHHHHHHHHHTCS
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCC-e---EEEEhHHhhc--------------c-cCCHHHHHHHHHHHHHHhcCC
Confidence 3445699999999999999999853322 1 2233221100 0 000011111122222234568
Q ss_pred eEEEecCCCCCC--------h------hhHHhhccccCC--CCCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChh
Q 048135 219 FLIVLDNVWSKN--------Y------GLWKTLKSPFMA--GTPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDD 277 (1189)
Q Consensus 219 ~LlvlDdv~~~~--------~------~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~ 277 (1189)
++|++|+++.-. . .....+...+.. ...+..||.||...+..... ..+..+++...+.+
T Consensus 304 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 304 CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHH
T ss_pred ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHH
Confidence 999999985410 0 011112222221 12344566677655443211 23467889888988
Q ss_pred hHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCC
Q 048135 278 DCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGL 313 (1189)
Q Consensus 278 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~ 313 (1189)
+-.++|..++-+-. .....++ ..|++.+.|.
T Consensus 384 ~R~~Ilk~~l~~~~-l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 384 GRANIFRIHSKSMS-VERGIRW----ELISRLCPNS 414 (467)
T ss_dssp HHHHHHHHHHTTSC-BCSSCCH----HHHHHHCCSC
T ss_pred HHHHHHHHHhcCCC-CCCCCCH----HHHHHHCCCC
Confidence 88999987763221 1111233 4566777765
No 218
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.29 E-value=0.0036 Score=59.24 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=47.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+-|+|..|+|||++|+++++... -|+.+.-. +... .. ...+.+ ..+.-.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~-~~~~---~~-----------------~~~~~~--~a~~~~ 78 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-------PWVSPARV-EYLI---DM-----------------PMELLQ--KAEGGV 78 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-------CEECCSST-THHH---HC-----------------HHHHHH--HTTTSE
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-------CeEEechh-hCCh---Hh-----------------hhhHHH--hCCCCe
Confidence 356999999999999999887422 22222211 1111 00 011111 123457
Q ss_pred EEecCCCCCChhhHHhhccccCCC-CCCcEEEEEcCC
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAG-TPGSKIIVTTRS 256 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 256 (1189)
+++|+++.-..+....+...+... ..+.+||+||..
T Consensus 79 l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 79 LYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred EEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 899999765555555554444322 245678887763
No 219
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.21 E-value=0.044 Score=60.25 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=34.5
Q ss_pred eEeCCCCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHhCCChHHHH
Q 048135 268 YYNLELLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKCKGLPQAAA 318 (1189)
Q Consensus 268 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 318 (1189)
.+.+++.+.++-.+++.+.+-..+... -.+.+..|+++++|.|-.+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~~----~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHhcCCChHHHH
Confidence 588999999999999988764322111 13567889999999996554
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.12 E-value=0.048 Score=57.51 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=65.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|..|+||||+|+++.+..... | +.+..+.-.+ .. .......+...+.........+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~-~---~~i~~~~~~~----------~~-----~~~~~~~~~~~~~~a~~~~~~i 107 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP-F---FTISGSDFVE----------MF-----VGVGASRVRDMFEQAKKAAPCI 107 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC-E---EEECSCSSTT----------SC-----CCCCHHHHHHHHHHHHTTCSEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC-E---EEEeHHHHHH----------Hh-----hhhhHHHHHHHHHHHHHcCCee
Confidence 35699999999999999998743211 1 2232211100 00 0011122223333333455679
Q ss_pred EEecCCCCCC----------h----hhHHhhccccCC--CCCCcEEEEEcCCchhh-hcc----CCCceEeCCCCChhhH
Q 048135 221 IVLDNVWSKN----------Y----GLWKTLKSPFMA--GTPGSKIIVTTRSVDVA-LTL----GPIDYYNLELLSDDDC 279 (1189)
Q Consensus 221 lvlDdv~~~~----------~----~~~~~l~~~l~~--~~~gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~ 279 (1189)
+++|+++.-. . .....+...+.. ...+..||.||...+.. ... .....+.+...+.++-
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r 187 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence 9999983210 0 111222211111 12345677777655422 111 1234677888888888
Q ss_pred HHHHHHhh
Q 048135 280 WSIFEKHA 287 (1189)
Q Consensus 280 ~~lf~~~a 287 (1189)
.+++...+
T Consensus 188 ~~il~~~~ 195 (257)
T 1lv7_A 188 EQILKVHM 195 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887665
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.06 E-value=0.019 Score=65.78 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=79.5
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+.|+|++|+|||++|+++.+..... | +.++.+.-... .. ..........+.+.....+.+|
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~-f---~~is~~~~~~~----------~~-----g~~~~~~r~lf~~A~~~~p~IL 112 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVP-F---FHISGSDFVEL----------FV-----GVGAARVRDLFAQAKAHAPCIV 112 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCC-E---EEEEGGGTTTC----------CT-----THHHHHHHHHHHHHHHTCSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC-e---eeCCHHHHHHH----------Hh-----cccHHHHHHHHHHHHhcCCCEE
Confidence 5699999999999999998743221 2 23333221110 00 0011122233444445678899
Q ss_pred EecCCCCCCh--------------hhHHhhccccCC--CCCCcEEEEEcCCchhhhc--c---CCCceEeCCCCChhhHH
Q 048135 222 VLDNVWSKNY--------------GLWKTLKSPFMA--GTPGSKIIVTTRSVDVALT--L---GPIDYYNLELLSDDDCW 280 (1189)
Q Consensus 222 vlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~ 280 (1189)
+||+++.-.. ....++...+.. ...+..||.||...+.... . .....+.+...+.++-.
T Consensus 113 fIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~ 192 (476)
T 2ce7_A 113 FIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRK 192 (476)
T ss_dssp EEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred EEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHH
Confidence 9999954110 112233322221 1235667777776654321 1 12247888888888888
Q ss_pred HHHHHhhccCCCcccchhHHHHHHHHHHHhCCCh
Q 048135 281 SIFEKHAFENRDASAHQNLELIHAKVVEKCKGLP 314 (1189)
Q Consensus 281 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 314 (1189)
+++..++-... .....++ ..+++.+.|..
T Consensus 193 ~Il~~~~~~~~-l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 193 KILEIHTRNKP-LAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred HHHHHHHHhCC-CcchhhH----HHHHHhcCCCc
Confidence 88877653221 1111122 34677787766
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.93 E-value=0.0054 Score=65.43 Aligned_cols=128 Identities=17% Similarity=0.099 Sum_probs=64.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|.+|+|||++|+++++..... |- .+..+.-. ....+. ....... .+......+..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~-~~---~v~~~~~~----------~~~~~~--~~~~~~~---~~~~a~~~~~~v 106 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVP-FF---SMGGSSFI----------EMFVGL--GASRVRD---LFETAKKQAPSI 106 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCC-CC---CCCSCTTT----------TSCSSS--CSSSSST---THHHHHHSCSCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC-EE---EechHHHH----------Hhhcch--HHHHHHH---HHHHHHhcCCeE
Confidence 35699999999999999998753222 21 11111100 001110 0111111 122222346789
Q ss_pred EEecCCCCCCh---------------hhHHhhccccCCC---CCCcEEEEEcCCchhhh-c-c---CCCceEeCCCCChh
Q 048135 221 IVLDNVWSKNY---------------GLWKTLKSPFMAG---TPGSKIIVTTRSVDVAL-T-L---GPIDYYNLELLSDD 277 (1189)
Q Consensus 221 lvlDdv~~~~~---------------~~~~~l~~~l~~~---~~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~ 277 (1189)
|++||++.-.. .....+...+... .....||.||...+... . . .....+.++..+.+
T Consensus 107 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~ 186 (268)
T 2r62_A 107 IFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186 (268)
T ss_dssp EEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTT
T ss_pred EEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHH
Confidence 99999943211 1122233333221 12245667776554221 1 1 12246788888888
Q ss_pred hHHHHHHHhh
Q 048135 278 DCWSIFEKHA 287 (1189)
Q Consensus 278 ~~~~lf~~~a 287 (1189)
+..+++...+
T Consensus 187 ~r~~il~~~~ 196 (268)
T 2r62_A 187 GRVEILKVHI 196 (268)
T ss_dssp THHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888887665
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.90 E-value=0.014 Score=63.85 Aligned_cols=93 Identities=14% Similarity=0.176 Sum_probs=46.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC--CCCChhHHHHHHHHHHccCc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS--NLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~ 218 (1189)
.+.++|..|+|||++|+.+.+..... -...+.+..+...+.. ....+ ++.... .......+...+. ....
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~~~~~~~~~-~~~~l---~g~~~~~~~~~~~~~~~~~~~---~~~~ 120 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDMTEYMEKH-AVSRL---IGAPPGYVGYEEGGQLTEAVR---RRPY 120 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEEGGGCCSTT-HHHHH---HCCCTTSTTTTTCCHHHHHHH---HCSS
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEeecccccccc-cHHHh---cCCCCccccccccchHHHHHH---hCCC
Confidence 35699999999999999998742211 1123445444332211 11111 111111 1111122222222 2334
Q ss_pred eEEEecCCCCCChhhHHhhcccc
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPF 241 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l 241 (1189)
-+++||+++.-.......+...+
T Consensus 121 ~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 121 SVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHH
T ss_pred eEEEEeChhhcCHHHHHHHHHHH
Confidence 69999999766555556555444
No 224
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.83 E-value=0.0042 Score=66.03 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=43.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEe--cCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCV--SEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.|+|++|+||||||.++... .-..++|+++ .+..+. . ..+.++....+.+.+.+.+
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~~~eE~v~~---------------~-~~~le~~l~~i~~~l~~~~- 184 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA----LGGKDKYATVRFGEPLSG---------------Y-NTDFNVFVDDIARAMLQHR- 184 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH----HHTTSCCEEEEBSCSSTT---------------C-BCCHHHHHHHHHHHHHHCS-
T ss_pred EEEEcCCCCCHHHHHHHHHHh----CCCCEEEEEecchhhhhh---------------h-hcCHHHHHHHHHHHHhhCC-
Confidence 459999999999999998764 2123456666 332110 0 0345666666777777667
Q ss_pred EEEecCCC
Q 048135 220 LIVLDNVW 227 (1189)
Q Consensus 220 LlvlDdv~ 227 (1189)
++|+|++.
T Consensus 185 LLVIDsI~ 192 (331)
T 2vhj_A 185 VIVIDSLK 192 (331)
T ss_dssp EEEEECCT
T ss_pred EEEEeccc
Confidence 99999993
No 225
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.74 E-value=0.094 Score=55.58 Aligned_cols=126 Identities=19% Similarity=0.117 Sum_probs=66.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHH-HHHHccCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQL-EKAIAGQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~L 220 (1189)
+.|+|++|.||||||+++...... ..+++....-.+. ...........+ ...-.....+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCCe
Confidence 679999999999999999874322 1233332211100 000001111111 1111345789
Q ss_pred EEecCCCCCCh-----------hhHHhhccccCCC--CCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHHHH
Q 048135 221 IVLDNVWSKNY-----------GLWKTLKSPFMAG--TPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCWSI 282 (1189)
Q Consensus 221 lvlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~l 282 (1189)
+++|+++.-.. .....+...+..+ ....-++.+|...++.... ..+..+.+...+.++-.++
T Consensus 107 ~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~i 186 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186 (274)
T ss_dssp EEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHH
T ss_pred EeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHH
Confidence 99999954110 1112222222222 1234456677776654322 2345788888888888888
Q ss_pred HHHhh
Q 048135 283 FEKHA 287 (1189)
Q Consensus 283 f~~~a 287 (1189)
|....
T Consensus 187 l~~~~ 191 (274)
T 2x8a_A 187 LKTIT 191 (274)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88765
No 226
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.60 E-value=0.013 Score=63.24 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.+-++|++|+|||++|+++++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 445689999999999999999753
No 227
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.58 E-value=0.021 Score=71.81 Aligned_cols=131 Identities=12% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCcc---ccC-c-Cc-eEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKE---VEG-F-NP-KAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKA 213 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~---~~~-f-~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 213 (1189)
+.+.++|.+|+||||+|+.+.+... +.. . +. ++++..+.-.. +. ....+.......+.+.
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------------g~-~~~g~~~~~l~~~~~~ 257 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------------GA-KYRGEFEERLKAVIQE 257 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------------cC-ccchHHHHHHHHHHHH
Confidence 3467999999999999999886431 111 1 21 22332211100 00 0011222222222222
Q ss_pred H-c-cCceEEEecCCCCCCh-----hhHH---hhccccCCCCCCcEEEEEcCCchhh-----hc-cCCCceEeCCCCChh
Q 048135 214 I-A-GQKFLIVLDNVWSKNY-----GLWK---TLKSPFMAGTPGSKIIVTTRSVDVA-----LT-LGPIDYYNLELLSDD 277 (1189)
Q Consensus 214 l-~-~~~~LlvlDdv~~~~~-----~~~~---~l~~~l~~~~~gs~iivTtr~~~v~-----~~-~~~~~~~~l~~L~~~ 277 (1189)
+ . +++.+|++|++..-.. ..++ .+...+.. .+-++|.+|...... .. ..-...+.+++++.+
T Consensus 258 ~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~ 335 (854)
T 1qvr_A 258 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVE 335 (854)
T ss_dssp HHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHH
T ss_pred HHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHH
Confidence 2 2 3678999999954210 0121 22222222 234566555433221 11 111245889999999
Q ss_pred hHHHHHHHh
Q 048135 278 DCWSIFEKH 286 (1189)
Q Consensus 278 ~~~~lf~~~ 286 (1189)
+..+++...
T Consensus 336 e~~~iL~~~ 344 (854)
T 1qvr_A 336 ETISILRGL 344 (854)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988654
No 228
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.53 E-value=0.057 Score=58.81 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+-|+|.+|+|||++|+.+.+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34569999999999999999874
No 229
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.48 E-value=0.0082 Score=59.78 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|.+|+||||+|+++++.
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999998764
No 230
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.42 E-value=0.023 Score=60.34 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+-|+|..|+|||++|+.+++.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 4569999999999999999874
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.34 E-value=0.053 Score=65.89 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=79.5
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 218 (1189)
++-+-++|++|.|||+||+++++..... .+.|..+ ++.... .......+........+..+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~----------~l~sk~-----~gese~~lr~lF~~A~~~~P 298 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAF----FFLINGP----------EIMSKL-----AGESESNLRKAFEEAEKNAP 298 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHH----------HHHSSC-----TTHHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhH----------Hhhccc-----chHHHHHHHHHHHHHHHcCC
Confidence 3446699999999999999999854322 1233221 111110 01111222223333345678
Q ss_pred eEEEecCCCCCCh-----------hhHHhhccccCCC--CCCcEEEEEcCCchhhhc-c----CCCceEeCCCCChhhHH
Q 048135 219 FLIVLDNVWSKNY-----------GLWKTLKSPFMAG--TPGSKIIVTTRSVDVALT-L----GPIDYYNLELLSDDDCW 280 (1189)
Q Consensus 219 ~LlvlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~ 280 (1189)
.+|++|+++.--. ....++...+... ..+-.||.||...+.... + .....+++...+.++-.
T Consensus 299 sIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~ 378 (806)
T 3cf2_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378 (806)
T ss_dssp EEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHH
T ss_pred eEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHH
Confidence 9999999954110 0112222222111 123445666665443221 1 23357889988999889
Q ss_pred HHHHHhhccCCCcccchhHHHHHHHHHHHhCCCh
Q 048135 281 SIFEKHAFENRDASAHQNLELIHAKVVEKCKGLP 314 (1189)
Q Consensus 281 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g~P 314 (1189)
++|..+.-+. ......++ .+|++++.|.-
T Consensus 379 ~IL~~~l~~~-~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 379 EILQIHTKNM-KLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp HHHHHTCSSS-EECTTCCH----HHHHHHCCSCC
T ss_pred HHHHHHhcCC-CCCcccCH----HHHHHhcCCCC
Confidence 9998775321 11112233 45677777764
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.33 E-value=0.074 Score=61.32 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=57.7
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEc---------CC----c-hhh-hccCCCceEeCCCCChhhHHHHHH
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTT---------RS----V-DVA-LTLGPIDYYNLELLSDDDCWSIFE 284 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt---------r~----~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~ 284 (1189)
++++|++..-..+.++.+...+...... -+|+.| .+ . .+. ....-...+.+.+++.++..+.+.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999777677788887777655434 344344 11 1 010 011122457999999999999998
Q ss_pred HhhccCCCcccchhHHHHHHHHHHHh-CCChHHHHH
Q 048135 285 KHAFENRDASAHQNLELIHAKVVEKC-KGLPQAAAN 319 (1189)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~i~~~c-~g~Plai~~ 319 (1189)
..+-..+... . .+....|++.+ +|.|-.+..
T Consensus 377 ~~~~~~~~~~-~---~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 377 IRAQTEGINI-S---EEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHTCCB-C---HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhCCCC-C---HHHHHHHHHHccCCCHHHHHH
Confidence 7763222111 1 23456777887 787765443
No 233
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.31 E-value=0.042 Score=63.47 Aligned_cols=122 Identities=14% Similarity=0.166 Sum_probs=60.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccc---cC-c-Cc-eEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEV---EG-F-NP-KAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIA 215 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~---~~-f-~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 215 (1189)
+-|+|.+|+|||++|+.+...... .. . +. .+.+..+ ....+. -. ..+...+...-.
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~~~~g~--~e---~~~~~~~~~~~~ 265 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------TKYRGE--FE---DRLKKVMDEIRQ 265 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------------------C---TTHHHHHHHHHT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------ccccch--HH---HHHHHHHHHHHh
Confidence 359999999999999998764211 11 1 11 1122222 000000 00 112222333334
Q ss_pred cCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhcc-------CCCceEeCCCCChhhHHHHHHHhh
Q 048135 216 GQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL-------GPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
.++.++++| . ..+....+...+..+ .-++|.+|......... .-...+.++..+.++..+++...+
T Consensus 266 ~~~~iLfiD-~---~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 266 AGNIILFID-A---AIDASNILKPSLARG--ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CCCCEEEEC-C-----------CCCTTSS--SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCCeEEEEe-C---chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 567899999 1 112333444444332 35666666554421111 112468999999999999998764
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.05 E-value=0.013 Score=72.76 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=65.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+-++|.+|+|||++|+++.+..... -...+.++++...+... .....+...++ +...-+|
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~~s~~~~~~~----------------~~~~~l~~~~~---~~~~~vl 583 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIFGD-EESMIRIDMSEYMEKHS----------------TSGGQLTEKVR---RKPYSVV 583 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEEGGGGCSSCC----------------CC---CHHHHH---HCSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEechhcccccc----------------cccchhhHHHH---hCCCeEE
Confidence 4599999999999999998642111 12234444432211000 00111111222 1233489
Q ss_pred EecCCCCCChhhHHhhccccCCC-----------CCCcEEEEEcCCch-----h----hhcc------CCCceEeCCCCC
Q 048135 222 VLDNVWSKNYGLWKTLKSPFMAG-----------TPGSKIIVTTRSVD-----V----ALTL------GPIDYYNLELLS 275 (1189)
Q Consensus 222 vlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~~-----v----~~~~------~~~~~~~l~~L~ 275 (1189)
+||++..-..+....+...+..+ ....+||+||.... + ...+ ....++.+.+++
T Consensus 584 ~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~ 663 (758)
T 3pxi_A 584 LLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLE 663 (758)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--C
T ss_pred EEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCC
Confidence 99999776666666555444321 13468888887311 0 0111 112477788888
Q ss_pred hhhHHHHHHHhh
Q 048135 276 DDDCWSIFEKHA 287 (1189)
Q Consensus 276 ~~~~~~lf~~~a 287 (1189)
.++-.+++....
T Consensus 664 ~~~~~~i~~~~l 675 (758)
T 3pxi_A 664 KKHLTEIVSLMS 675 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877777666543
No 235
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.00 E-value=0.13 Score=56.81 Aligned_cols=152 Identities=11% Similarity=-0.027 Sum_probs=92.8
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHH-HHccCceEE
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEK-AIAGQKFLI 221 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~Ll 221 (1189)
-++|..|.||++.|+.+.+.....+|+....+.+....+ +.++.+.+.. -+-+++-++
T Consensus 22 l~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~plf~~~kvv 80 (343)
T 1jr3_D 22 LLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTD---------------------WNAIFSLCQAMSLFASRQTL 80 (343)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCC---------------------HHHHHHHHHHHHHCCSCEEE
T ss_pred EEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCC---------------------HHHHHHHhcCcCCccCCeEE
Confidence 489999999999998887643222244222222222222 3333333222 234567788
Q ss_pred EecCCCC-CChhhHHhhccccCCCCCCcEEEEEcCC-------chhhhcc-CCCceEeCCCCChhhHHHHHHHhhccCCC
Q 048135 222 VLDNVWS-KNYGLWKTLKSPFMAGTPGSKIIVTTRS-------VDVALTL-GPIDYYNLELLSDDDCWSIFEKHAFENRD 292 (1189)
Q Consensus 222 vlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 292 (1189)
|+|++.. -....++.+...+....+++.+|++|.. ..+...+ ....+++..+++.++..+...+.+-..+.
T Consensus 81 ii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~ 160 (343)
T 1jr3_D 81 LLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL 160 (343)
T ss_dssp EEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTC
T ss_pred EEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 9999865 3446677777766655567787776643 1233332 23367899999999888877776533222
Q ss_pred cccchhHHHHHHHHHHHhCCChHHHHH
Q 048135 293 ASAHQNLELIHAKVVEKCKGLPQAAAN 319 (1189)
Q Consensus 293 ~~~~~~~~~~~~~i~~~c~g~Plai~~ 319 (1189)
.. . .+.+..+++.++|...++..
T Consensus 161 ~i-~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 161 EL-D---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp EE-C---HHHHHHHHHSSTTCHHHHHH
T ss_pred CC-C---HHHHHHHHHHhchHHHHHHH
Confidence 11 1 34567899999998887764
No 236
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.98 E-value=0.047 Score=59.01 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+-|+|..|+|||++|+++.+.
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHHh
Confidence 4569999999999999999874
No 237
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.97 E-value=0.026 Score=52.02 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=43.1
Q ss_pred eEEEeccCCCc--ccCccccCcccccEEecccccccccccc-ccCCCCCcEEeccCccc
Q 048135 527 RVLSLKSYHII--ELPNSIGRLMHLRYLDMSNTAISSLPES-TCSLINLQTLLLRRCFY 582 (1189)
Q Consensus 527 r~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~L~~~~~ 582 (1189)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.||.. |..+.+|++|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36788888888 8887653 4789999999999999765 67788999999988753
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.95 E-value=0.0047 Score=67.00 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=24.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCcc-ccCcCceEEEEe
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKE-VEGFNPKAWVCV 176 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~-~~~f~~~~wv~~ 176 (1189)
+.+.|+|..|+|||+||+++++... .+++ .++++++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEEH
Confidence 3456999999999999999987533 2223 3445544
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.57 E-value=0.085 Score=53.95 Aligned_cols=42 Identities=24% Similarity=0.108 Sum_probs=30.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKIT 186 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~ 186 (1189)
.+.|+|.+|+||||+|..+.. ..-..++|++....++...+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL----LSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH----HHCSEEEEEESSCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH----HcCCcEEEEECCCCCCHHHHH
Confidence 456999999999999999876 113457788776655655443
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.55 E-value=0.14 Score=63.57 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=68.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCcc---ccC--cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-c
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKE---VEG--FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI-A 215 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~---~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 215 (1189)
+.|+|.+|+||||+|+.+.+... +.. ....+|. +.-. .+ +.+. ....+.++....+.+.+ .
T Consensus 210 vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~~~----~l-------~~~~-~~~g~~e~~l~~~~~~~~~ 276 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LDIG----SL-------LAGT-KYRGDFEKRFKALLKQLEQ 276 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CCCC--------------CCC-CCSSCHHHHHHHHHHHHSS
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-EcHH----HH-------hccc-cccchHHHHHHHHHHHHHh
Confidence 45999999999999999876421 111 2333332 1100 00 0001 11122333333333333 3
Q ss_pred cCceEEEecCCCCC---------ChhhHHhhccccCCCCCCcEEEEEcCCchhhhcc-------CCCceEeCCCCChhhH
Q 048135 216 GQKFLIVLDNVWSK---------NYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL-------GPIDYYNLELLSDDDC 279 (1189)
Q Consensus 216 ~~~~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~~~~~~~l~~L~~~~~ 279 (1189)
.++.+|++||+..- ..+....+...+.. .+.++|.+|......... .-...+.+...+.++.
T Consensus 277 ~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~ 354 (758)
T 1r6b_X 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEET 354 (758)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHH
T ss_pred cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHH
Confidence 45789999999542 11222334443332 245677766644322111 1113688999999999
Q ss_pred HHHHHHhh
Q 048135 280 WSIFEKHA 287 (1189)
Q Consensus 280 ~~lf~~~a 287 (1189)
.+++...+
T Consensus 355 ~~il~~l~ 362 (758)
T 1r6b_X 355 VQIINGLK 362 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 241
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.52 E-value=0.34 Score=55.64 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAIL 190 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 190 (1189)
..+.|.|.+|+||||+|..+........=..++|++.. .+..++...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS--SCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC--CCHHHHHHHHH
Confidence 34569999999999999888764322111246676544 34456665554
No 242
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.43 E-value=0.084 Score=65.41 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=61.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCcc---ccC--cCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKE---VEG--FNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~---~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
+-++|.+|+|||++|+.+.+... +.. .+..+ +.+.- +.. ....-...+...+...-..
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~---------------g~~-~~G~~e~~l~~~~~~~~~~ 266 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM---------------GTK-YRGEFEDRLKKVMDEIRQA 266 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC--------------------------CTTHHHHHHHHHTC
T ss_pred eEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc---------------ccc-ccchHHHHHHHHHHHHHhc
Confidence 45999999999999999876421 111 12221 11111 000 0000011222333333446
Q ss_pred CceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhhhcc-------CCCceEeCCCCChhhHHHHHHHhh
Q 048135 217 QKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVALTL-------GPIDYYNLELLSDDDCWSIFEKHA 287 (1189)
Q Consensus 217 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 287 (1189)
++.+|++|.- .+..+.+...+..+ .-++|.||......... .-...+.++..+.++..+++...+
T Consensus 267 ~~~iLfiD~~----~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 267 GNIILFIDAA----IDASNILKPSLARG--ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CCEEEEEcCc----hhHHHHHHHHHhcC--CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 7889999921 12233344444322 45677666654421111 111468999999999999998654
No 243
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.31 E-value=0.36 Score=55.25 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=32.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILES 192 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 192 (1189)
.+.|.|.+|+||||+|..+........=..++|++.. .+..++...++..
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 4569999999999999887754322211246676554 4566677666544
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.25 E-value=0.056 Score=63.64 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.++|++|+||||+|+.+...
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4569999999999999999874
No 245
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.17 E-value=0.29 Score=51.27 Aligned_cols=127 Identities=19% Similarity=0.122 Sum_probs=64.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+.|+|..|+||||||+.+...... ..+.+.. .. +..... ......+...++..-.....++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~----~~i~~~~------~~----~~~~~~-----~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV----PFITASG------SD----FVEMFV-----GVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC----CEEEEEH------HH----HHHSCT-----THHHHHHHHHHHHHTTSSSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC----CEEEeeH------HH----HHHHHh-----hHHHHHHHHHHHHHHhcCCeEE
Confidence 569999999999999999874321 1222221 11 111100 0000111111222212345799
Q ss_pred EecCCCCC----------Chhh----HHhhccccCCCC--CCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHH
Q 048135 222 VLDNVWSK----------NYGL----WKTLKSPFMAGT--PGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCW 280 (1189)
Q Consensus 222 vlDdv~~~----------~~~~----~~~l~~~l~~~~--~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~ 280 (1189)
++|+++.- .... ...+...+..+. ....++.||...++.... .....++++..+.++-.
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 192 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 192 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHH
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHH
Confidence 99999320 0011 122322232222 223445566665543321 22356888888888888
Q ss_pred HHHHHhh
Q 048135 281 SIFEKHA 287 (1189)
Q Consensus 281 ~lf~~~a 287 (1189)
+++...+
T Consensus 193 ~il~~~~ 199 (254)
T 1ixz_A 193 QILRIHA 199 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887665
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.75 E-value=0.21 Score=53.18 Aligned_cols=127 Identities=19% Similarity=0.112 Sum_probs=64.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceEE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFLI 221 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 221 (1189)
+.|+|..|+||||||+.+..... ...+.+.. ..+ ..... ......+....+..-.....++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~------~~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR----VPFITASG------SDF----VEMFV-----GVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEH------HHH----HHSTT-----THHHHHHHHHHHHHHTSCSEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcC----CCEEEecH------HHH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEE
Confidence 57999999999999999987432 12233321 111 11100 0000111122222222456799
Q ss_pred EecCCCCC-----------C---hhhHHhhccccCCCCC--CcEEEEEcCCchhhhcc-----CCCceEeCCCCChhhHH
Q 048135 222 VLDNVWSK-----------N---YGLWKTLKSPFMAGTP--GSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDDCW 280 (1189)
Q Consensus 222 vlDdv~~~-----------~---~~~~~~l~~~l~~~~~--gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~ 280 (1189)
|+|+++.- . ......+...+..+.. ...++.||...++.... .....++++..+.++-.
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 216 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 216 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHH
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHH
Confidence 99999320 0 0111223222322221 23445566665543211 23357888888888888
Q ss_pred HHHHHhh
Q 048135 281 SIFEKHA 287 (1189)
Q Consensus 281 ~lf~~~a 287 (1189)
+++...+
T Consensus 217 ~il~~~~ 223 (278)
T 1iy2_A 217 QILRIHA 223 (278)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887665
No 247
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.60 E-value=0.1 Score=55.22 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=49.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccC-cCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHH-HHHHHHH-
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEG-FNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQV-QIQLEKA- 213 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~- 213 (1189)
+-|+|.+|+||||||.++........ =..++||+....++.. .+++++.+.. ...+.++. ...+...
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD 105 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH
Confidence 45999999999999987765322221 2357898887777753 2566665432 12344554 3332222
Q ss_pred -H-ccCceEEEecCCC
Q 048135 214 -I-AGQKFLIVLDNVW 227 (1189)
Q Consensus 214 -l-~~~~~LlvlDdv~ 227 (1189)
+ +++.-++|+|-|.
T Consensus 106 ~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 106 AIERGEKVVVFIDSLG 121 (333)
T ss_dssp TCCTTCCEEEEEECST
T ss_pred HhhccCceEEEEeccc
Confidence 2 3456799999983
No 248
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.46 E-value=0.13 Score=56.81 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=51.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 214 (1189)
+++.|+|.+|+||||+|.++....... -..++|++....++... ++.++.... ...+.++....+++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 345699999999999998876532211 23688998887766542 344433211 2234566666666555
Q ss_pred cc-CceEEEecCCC
Q 048135 215 AG-QKFLIVLDNVW 227 (1189)
Q Consensus 215 ~~-~~~LlvlDdv~ 227 (1189)
+. ..-+||+|.+.
T Consensus 149 ~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 149 RSGAIDVVVVDSVA 162 (366)
T ss_dssp TTTCCSEEEEECTT
T ss_pred hcCCCCEEEEeChH
Confidence 43 44589999983
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.46 E-value=0.093 Score=51.48 Aligned_cols=117 Identities=17% Similarity=0.072 Sum_probs=56.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC---CcCHHHHHHHHHHHcc--CCCC--CCCC-------hhHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE---DFDVLKITKAILESVT--SSPS--NLKD-------LNQV 206 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~--~~~~--~~~~-------~~~~ 206 (1189)
.+-|++-.|.||||.|-...-+.--.++. +.++...+ ..+...++..+.-.+. +... ...+ ....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~r-V~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKN-VGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCC-EEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 45578888899999996655422111132 33332222 2233344433310000 0000 1111 1222
Q ss_pred HHHHHHHHccCce-EEEecCCCC---CChhhHHhhccccCCCCCCcEEEEEcCCch
Q 048135 207 QIQLEKAIAGQKF-LIVLDNVWS---KNYGLWKTLKSPFMAGTPGSKIIVTTRSVD 258 (1189)
Q Consensus 207 ~~~l~~~l~~~~~-LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 258 (1189)
....++.+.+.+| |||||++-. -..-..+.+...+........||+|+|...
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 3345556655555 999999821 011223344444444445678999999863
No 250
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.46 E-value=0.11 Score=57.16 Aligned_cols=82 Identities=21% Similarity=0.138 Sum_probs=49.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 214 (1189)
+++.|.|.+|+||||+|.++....... =..++|++....++... +..++.... ...+.++....++...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 455699999999999998877532211 23578998877776432 344433211 1223455555554443
Q ss_pred c-cCceEEEecCCC
Q 048135 215 A-GQKFLIVLDNVW 227 (1189)
Q Consensus 215 ~-~~~~LlvlDdv~ 227 (1189)
+ .+.-+||+|.+.
T Consensus 138 ~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 138 RSGAVDVIVVDSVA 151 (356)
T ss_dssp HHTCCSEEEEECGG
T ss_pred hccCCCEEEEcCHH
Confidence 3 445589999983
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.45 E-value=0.019 Score=58.29 Aligned_cols=110 Identities=12% Similarity=0.015 Sum_probs=58.1
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC--CCCChhHHHHHHHHHHccCce
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS--NLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.|+|..|+||||+|..+.++...++.. ++.+...... . ....++..++.... ......++...+++.+.+.++
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~k-Vli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVK-YLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCC-EEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCE-EEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4489999999999998777643322233 3333322211 1 11233344432211 122334444455544444445
Q ss_pred -EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch
Q 048135 220 -LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD 258 (1189)
Q Consensus 220 -LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 258 (1189)
+||+|.+..-..+..+.+.. +.. .|-.||+|-++.+
T Consensus 91 dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred CEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 99999996533344444432 222 2778999988543
No 252
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.40 E-value=0.076 Score=48.80 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=25.0
Q ss_pred CCCccceeecccCCCCcccCcCCCCCCCccCceeeccCCC
Q 048135 1124 LPTSLTKLAIAKFPELKHLSSKGFRNLTSLDLLRIRNCPK 1163 (1189)
Q Consensus 1124 ~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 1163 (1189)
.+++|+.|+|++| .++.+|...|..+++|+.|+|++||.
T Consensus 29 lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 29 FPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4556667777666 56666655566666777777766543
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.39 E-value=0.068 Score=66.36 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=51.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHc-cCceE
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIA-GQKFL 220 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~L 220 (1189)
+-++|.+|+|||++|+.+.+... ...+.++.+...+... ...+.+........++ ...+.+.++ ....+
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l~----~~~~~i~~s~~~~~~~-----~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~v 560 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYMERHT-----VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAV 560 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT----CEEEEEEGGGCSSSSC-----CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhc----CCEEEEechhhcchhh-----HhhhcCCCCCCcCccc-cchHHHHHHhCCCcE
Confidence 45899999999999999987431 1123344333211100 0011111111100000 011222232 34578
Q ss_pred EEecCCCCCChhhHHhhccccCCCC-----------CCcEEEEEcCC
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGT-----------PGSKIIVTTRS 256 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 256 (1189)
++||++..-..+..+.+...+..+. ....||.||..
T Consensus 561 l~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 561 LLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred EEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 9999997766666666555443220 23457777754
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.35 E-value=0.12 Score=53.69 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=33.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccC-----cCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEG-----FNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
++.|+|.+|+||||+|..+........ -..++|+.....+....+. ++++.++
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g 83 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYG 83 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcC
Confidence 456999999999999998876321111 2457888776655554432 3344443
No 255
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.17 E-value=0.16 Score=55.57 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=52.1
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 214 (1189)
+++.|+|.+|+||||||.++....... =..++|++....++.. .+++++.... ...+.++....++..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 345699999999999999887642211 1346788777666654 3444443321 2345556656666555
Q ss_pred c-cCceEEEecCCCC
Q 048135 215 A-GQKFLIVLDNVWS 228 (1189)
Q Consensus 215 ~-~~~~LlvlDdv~~ 228 (1189)
+ .+.-++|+|.+..
T Consensus 136 ~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAA 150 (356)
T ss_dssp HTSCCSEEEEECTTT
T ss_pred hhcCCCeEEehHhhh
Confidence 4 4556899999843
No 256
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.16 E-value=0.28 Score=56.45 Aligned_cols=123 Identities=17% Similarity=0.114 Sum_probs=67.3
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc----C
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG----Q 217 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~ 217 (1189)
+.|+|.+|+||||||+++...... ..+.+..+.-.+ .........++..++. .
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~~~~~-------------------~~~g~~~~~v~~lfq~a~~~~ 123 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVE-------------------MFVGVGAARVRDLFETAKRHA 123 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGGGGTS-------------------SCTTHHHHHHHHHTTTSSSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC----CEEEEehhHHHH-------------------hhhhhHHHHHHHHHHHHHhcC
Confidence 579999999999999999874321 123333221100 0011122233344432 3
Q ss_pred ceEEEecCCCCCC----------hhh----HHhhccccCCC--CCCcEEEEEcCCchhhhcc-----CCCceEeCCCCCh
Q 048135 218 KFLIVLDNVWSKN----------YGL----WKTLKSPFMAG--TPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSD 276 (1189)
Q Consensus 218 ~~LlvlDdv~~~~----------~~~----~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~ 276 (1189)
..++++|+++.-. .+. ..++...+..+ ..+..|+.||...++.... .....+.+...+.
T Consensus 124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~ 203 (499)
T 2dhr_A 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 203 (499)
T ss_dssp SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCH
T ss_pred CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCH
Confidence 4799999994310 111 22333333322 2344566677766553311 1235788888888
Q ss_pred hhHHHHHHHhh
Q 048135 277 DDCWSIFEKHA 287 (1189)
Q Consensus 277 ~~~~~lf~~~a 287 (1189)
++-.+++..++
T Consensus 204 ~~R~~IL~~~~ 214 (499)
T 2dhr_A 204 KGREQILRIHA 214 (499)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 88888887765
No 257
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.15 E-value=0.12 Score=53.26 Aligned_cols=114 Identities=14% Similarity=0.025 Sum_probs=58.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC---------------------
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS--------------------- 198 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------------------- 198 (1189)
..+.|+|.+|+|||||++.+....... =..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQW 99 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCcee
Confidence 345699999999999999887532211 12355655433 3444433332 2221110
Q ss_pred --CCCChhHHHHHHHHHHcc-Cce--EEEecCCCCC---ChhhHHhhccccCC--CCCCcEEEEEcCCc
Q 048135 199 --NLKDLNQVQIQLEKAIAG-QKF--LIVLDNVWSK---NYGLWKTLKSPFMA--GTPGSKIIVTTRSV 257 (1189)
Q Consensus 199 --~~~~~~~~~~~l~~~l~~-~~~--LlvlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 257 (1189)
...+.+++...+.+.+.. +.- ++|+|....- +......+...+.. ...|..||++|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 011445555555554432 334 9999998521 22222332222221 12477888888765
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.14 E-value=0.14 Score=56.17 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=50.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 214 (1189)
+++.|+|.+|+||||||.++....... =..++|++....++.. .++.++.... ...+.++....++...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 445699999999999998887532211 2357888887766653 2344443211 1234555555555444
Q ss_pred c-cCceEEEecCCCC
Q 048135 215 A-GQKFLIVLDNVWS 228 (1189)
Q Consensus 215 ~-~~~~LlvlDdv~~ 228 (1189)
+ .+.-+||+|.+..
T Consensus 136 ~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 136 RSGALDIIVIDSVAA 150 (349)
T ss_dssp TTTCCSEEEEECGGG
T ss_pred hcCCCCEEEEcChHh
Confidence 3 3456999999843
No 259
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.94 E-value=0.31 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+-++|..|+|||++|+++.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 34569999999999999999874
No 260
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.66 E-value=0.28 Score=53.89 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCcccc-----CcCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVE-----GFNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
++.|+|.+|+||||+|.++....... .-..++|++....++...+.. +++.++
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 45699999999999998877542221 123578998888777766543 344443
No 261
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.66 E-value=0.18 Score=54.95 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=36.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccC-----cCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEG-----FNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
+.+.|+|.+|+||||+|.++........ -..++|++....++...+.. +++.++
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 3456999999999999988875422211 13578998887777766543 345543
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.57 E-value=0.12 Score=65.00 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=51.5
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC---CCCChhHHHHHHHHHHccCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS---NLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~ 218 (1189)
+-|+|..|+|||++|+++.+...... ...+.++.+....... ...+.+... +......+...+++ ...
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~~~~-~~~i~i~~~~~~~~~~-----~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~ 661 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLFDTE-EAMIRIDMTEYMEKHA-----VSRLIGAPPGYVGYEEGGQLTEAVRR---RPY 661 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHHSSG-GGEEEECTTTCCSSGG-----GGGC--------------CHHHHHHH---CSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCC-CcEEEEechhccchhH-----HHHHcCCCCCCcCccccchHHHHHHh---CCC
Confidence 45999999999999999886421111 1223343333221100 011111000 00001112222222 234
Q ss_pred eEEEecCCCCCChhhHHhhccccCCCC-----------CCcEEEEEcCC
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPFMAGT-----------PGSKIIVTTRS 256 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 256 (1189)
-+|+||++..-..+..+.+...+..+. .+..||+||..
T Consensus 662 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 662 SVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred eEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 589999997766666666665554331 24457777764
No 263
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.41 E-value=0.12 Score=56.85 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=64.4
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc---Cc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG---QK 218 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~---~~ 218 (1189)
+-++|.+|+|||++|+.+.+..... | ..+.........++ .......... ... ..+. ..
T Consensus 49 vll~G~pGtGKT~la~~la~~~~~~-~---~~i~~~~~~~~~~l----~g~~~~~~~~-~~~---------~~~~g~l~~ 110 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMDLD-F---HRIQFTPDLLPSDL----IGTMIYNQHK-GNF---------EVKKGPVFS 110 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTTCC-E---EEEECCTTCCHHHH----HEEEEEETTT-TEE---------EEEECTTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC-e---EEEecCCCCChhhc----CCceeecCCC-Cce---------EeccCcccc
Confidence 4599999999999999998732111 2 22333323233322 1111000000 000 0001 12
Q ss_pred eEEEecCCCCCChhhHHhhccccCC-----------CCCCcEEEEEcCCch------hhhc-cCC-CceEeCCCCChhhH
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPFMA-----------GTPGSKIIVTTRSVD------VALT-LGP-IDYYNLELLSDDDC 279 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iivTtr~~~------v~~~-~~~-~~~~~l~~L~~~~~ 279 (1189)
.++++|+++.-.......+...+.. ......||.|+...+ +... ..- ...+.+...+.++-
T Consensus 111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~ 190 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESE 190 (331)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHH
T ss_pred cEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHH
Confidence 5899999976554444444333221 122345555655222 1110 011 12588888888888
Q ss_pred HHHHHHhhc
Q 048135 280 WSIFEKHAF 288 (1189)
Q Consensus 280 ~~lf~~~a~ 288 (1189)
.+++.+.+.
T Consensus 191 ~~il~~~~~ 199 (331)
T 2r44_A 191 LEVMRRVSN 199 (331)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhccc
Confidence 888887753
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.26 E-value=0.17 Score=54.05 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=43.2
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccc-cCcCceEEEEecC-CcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHcc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEV-EGFNPKAWVCVSE-DFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAG 216 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 216 (1189)
.+++.|+|.+|+||||++..+...... ++. .+..+.... .....+.+....+..+.+.....+..++...+.. + .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~-~ 181 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F-S 181 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-G
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-c
Confidence 456789999999999999888653321 112 244444322 2223333333333333222112233444444442 3 3
Q ss_pred CceEEEecCC
Q 048135 217 QKFLIVLDNV 226 (1189)
Q Consensus 217 ~~~LlvlDdv 226 (1189)
+.=++|+|-.
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 3457788843
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.23 E-value=0.059 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=20.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
|++.|+|++|+|||||++++..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999998763
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.41 E-value=0.21 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|.+|+|||||++.+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4569999999999999988764
No 267
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.34 E-value=0.24 Score=54.08 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=35.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccc------------cC-c--CceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEV------------EG-F--NPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~------------~~-f--~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
++.|+|.+|+||||+|.++...... .+ . ..++|++....++..++.+ +++.++
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 4569999999999999887653211 11 1 4678998888777776654 344443
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.16 E-value=0.074 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|+|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 34569999999999999999874
No 269
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.93 E-value=0.66 Score=57.32 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=65.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+.+.|+|.+|+||||||+++.+..... | +.+... + +. ... .......+...+.........
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~~~-~---i~v~~~------~----l~----~~~-~g~~~~~l~~vf~~a~~~~p~ 299 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETGAF-F---FLINGP------E----IM----SKL-AGESESNLRKAFEEAEKNAPA 299 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTTCE-E---EEEEHH------H----HS----SSS-TTHHHHHHHHHHHHHHHHCSE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCc-E---EEEEch------H----hh----hhh-hhhHHHHHHHHHHHHHhcCCc
Confidence 346799999999999999998742211 2 222211 1 10 000 001111222333333445678
Q ss_pred EEEecCCCCCCh-----------hhHHhhccccCC--CCCCcEEEEEcCCchhhh-cc----CCCceEeCCCCChhhHHH
Q 048135 220 LIVLDNVWSKNY-----------GLWKTLKSPFMA--GTPGSKIIVTTRSVDVAL-TL----GPIDYYNLELLSDDDCWS 281 (1189)
Q Consensus 220 LlvlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~ 281 (1189)
++++|+++.-.. .....+...+.. ...+..||.||...+-.. .. .....+.+...+.++-.+
T Consensus 300 il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 379 (806)
T 1ypw_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp EEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHH
T ss_pred EEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHH
Confidence 999999943110 011122211111 112445666666543221 11 122457788888888888
Q ss_pred HHHHhh
Q 048135 282 IFEKHA 287 (1189)
Q Consensus 282 lf~~~a 287 (1189)
++...+
T Consensus 380 il~~~~ 385 (806)
T 1ypw_A 380 ILQIHT 385 (806)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 888765
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.73 E-value=0.084 Score=51.69 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=17.3
Q ss_pred CCeEEccCCCcHHHHHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLV 159 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v 159 (1189)
.+.|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3569999999999999999
No 271
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.61 E-value=0.59 Score=56.83 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=62.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
+-+-++|++|.|||.+|+++.+..... ++.++ .. +++....+ .....+.......-+..+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~------f~~v~----~~----~l~s~~vG-----ese~~vr~lF~~Ar~~~P~ 572 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQAN------FISIK----GP----ELLTMWFG-----ESEANVREIFDKARQAAPC 572 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCE------EEECC----HH----HHHTTTCS-----SCHHHHHHHHHHHHTTCSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCc------eEEec----cc----hhhccccc-----hHHHHHHHHHHHHHHcCCc
Confidence 445699999999999999999853321 22232 11 22222111 1222222333333345789
Q ss_pred EEEecCCCCCC----------h----hhHHhhccccCCC--CCCcEEEEEcCCchhhhcc-----CCCceEeCCCCChhh
Q 048135 220 LIVLDNVWSKN----------Y----GLWKTLKSPFMAG--TPGSKIIVTTRSVDVALTL-----GPIDYYNLELLSDDD 278 (1189)
Q Consensus 220 LlvlDdv~~~~----------~----~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~ 278 (1189)
+|++|+++.-- . ....++...+... ..+--||-||...+..... ..+..+.+...+.++
T Consensus 573 IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~ 652 (806)
T 3cf2_A 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp EEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CH
T ss_pred eeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHH
Confidence 99999985410 0 0122233323222 1232334355544432211 234577887777777
Q ss_pred HHHHHHHhh
Q 048135 279 CWSIFEKHA 287 (1189)
Q Consensus 279 ~~~lf~~~a 287 (1189)
-.++|..+.
T Consensus 653 R~~il~~~l 661 (806)
T 3cf2_A 653 RVAILKANL 661 (806)
T ss_dssp HHHTTTTTS
T ss_pred HHHHHHHHh
Confidence 777777664
No 272
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.47 E-value=0.079 Score=57.55 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=42.5
Q ss_pred eEEccCCCcHHHHHHHHhcCcccc--CcCceEEEEecCCcCHHHHHHHHHHHccC----CCCCCCChhHH-----HHHHH
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVE--GFNPKAWVCVSEDFDVLKITKAILESVTS----SPSNLKDLNQV-----QIQLE 211 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~-----~~~l~ 211 (1189)
.|+|..|+|||||++.+.+....+ +++ ++++-+++..... .++.+.+.. ...+....... .-.+.
T Consensus 178 ~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A 253 (422)
T 3ice_A 178 LIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 253 (422)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 499999999999999887632211 133 3356666554221 122233211 01111111111 11123
Q ss_pred HHH--ccCceEEEecCC
Q 048135 212 KAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 212 ~~l--~~~~~LlvlDdv 226 (1189)
+++ +++.+|+++||+
T Consensus 254 Eyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 254 KRLVEHKKDVIILLDSI 270 (422)
T ss_dssp HHHHHTSCEEEEEEECH
T ss_pred HHHHhcCCCEEEEEeCc
Confidence 333 588999999999
No 273
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.33 E-value=0.31 Score=54.88 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=47.2
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCC------CCCCCChh-H-----HHHH
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSS------PSNLKDLN-Q-----VQIQ 209 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~-~-----~~~~ 209 (1189)
.|+|..|+||||||+.+..+...+.-+.++++-+.+.. ...++.+++.+.-... ....+... . ....
T Consensus 155 ~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~lt 234 (473)
T 1sky_E 155 GLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLT 234 (473)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 49999999999999988765332222445666666664 3444555454320000 00011111 0 1113
Q ss_pred HHHHH---ccCceEEEecCC
Q 048135 210 LEKAI---AGQKFLIVLDNV 226 (1189)
Q Consensus 210 l~~~l---~~~~~LlvlDdv 226 (1189)
+.+++ +++.+|+++||+
T Consensus 235 iAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 235 MAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHhcCCcEEEEeccH
Confidence 34444 578999999999
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.30 E-value=0.12 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=19.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|+|+.|+||||+|+.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999998863
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.18 E-value=0.56 Score=50.75 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=33.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILES 192 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 192 (1189)
.+.|.|.+|+||||+|..+..+...++ ..++|++.. .+..++...+...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 455999999999999988765432222 456676554 4566666666654
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.02 E-value=0.1 Score=50.91 Aligned_cols=22 Identities=23% Similarity=0.073 Sum_probs=18.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999998764
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.96 E-value=0.093 Score=51.65 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.7
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+.|.|++|+||||+|+.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 356899999999999999986
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.69 E-value=0.12 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|+|+.|+||||+|+.+...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 34679999999999999999863
No 279
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.69 E-value=0.4 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=20.8
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcCc
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.++++.|+|.+|+||||+|..+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567799999999999998877543
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.68 E-value=0.14 Score=50.41 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.+.|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45679999999999999998763
No 281
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=89.67 E-value=0.82 Score=51.34 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=51.1
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCC------CC-----CCCC--hh----
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSS------PS-----NLKD--LN---- 204 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~-----~~~~--~~---- 204 (1189)
.|+|..|+|||+|+..+.+......-+.++++-+.+.. .+.++.+++.+.-... .. ..++ ..
T Consensus 157 ~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~ 236 (482)
T 2ck3_D 157 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 236 (482)
T ss_dssp EEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHH
T ss_pred eeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHH
Confidence 39999999999999988774322223556777777664 4566777776542211 00 1111 11
Q ss_pred -HHHHHHHHHHc---cCceEEEecCC
Q 048135 205 -QVQIQLEKAIA---GQKFLIVLDNV 226 (1189)
Q Consensus 205 -~~~~~l~~~l~---~~~~LlvlDdv 226 (1189)
.....+.++++ ++.+|+++||+
T Consensus 237 ~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 237 ALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11223445553 68999999998
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.64 E-value=0.15 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=20.6
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.+.|+|+.|+||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456779999999999999998764
No 283
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.61 E-value=1.6 Score=49.53 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=30.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHH
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILES 192 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 192 (1189)
.+.|.|.+|+||||+|.++..+...++ ..++|++.. .+..++...++..
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g-~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTT-CEEEEECSS--SCTTHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcC-CEEEEEECC--CCHHHHHHHHHHH
Confidence 456999999999999988776432221 235565443 3444555555443
No 284
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.54 E-value=0.14 Score=51.53 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999998764
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.54 E-value=0.12 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|+.|+||||+|+.+...
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999763
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.47 E-value=0.16 Score=50.33 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=19.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45679999999999999998753
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.33 E-value=0.17 Score=49.70 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.+.|+|+.|+||||+|+.+...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 45779999999999999998863
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.32 E-value=0.15 Score=50.79 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=19.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|+.|+||||+++.+...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999874
No 289
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.16 E-value=0.15 Score=49.77 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999863
No 290
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.82 E-value=0.59 Score=50.01 Aligned_cols=86 Identities=21% Similarity=0.130 Sum_probs=43.9
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHH--HHHHHHHHHccCCCC---CCCChhHH-HHHHHH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVL--KITKAILESVTSSPS---NLKDLNQV-QIQLEK 212 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~---~~~~~~~~-~~~l~~ 212 (1189)
.+++.|+|.+|+||||++..+....... =..+.++... .+... +-+...++..+.+.. ...+...+ ...+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 3467799999999999998887533221 1234444432 33222 222333444332110 11122222 234444
Q ss_pred HHccCceEEEecCC
Q 048135 213 AIAGQKFLIVLDNV 226 (1189)
Q Consensus 213 ~l~~~~~LlvlDdv 226 (1189)
.+..+.-++|+|-.
T Consensus 182 a~~~~~dvvIiDtp 195 (306)
T 1vma_A 182 ALARNKDVVIIDTA 195 (306)
T ss_dssp HHHTTCSEEEEEEC
T ss_pred HHhcCCCEEEEECC
Confidence 45555558888866
No 291
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.79 E-value=0.032 Score=55.05 Aligned_cols=22 Identities=23% Similarity=-0.026 Sum_probs=17.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+..|+|..|+||||+|..+..+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999666543
No 292
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=88.65 E-value=0.44 Score=50.91 Aligned_cols=87 Identities=18% Similarity=0.115 Sum_probs=44.0
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCC-cCHHHHHHHHHHHccCCC---CCCCChhHHHHHHHHHH
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSED-FDVLKITKAILESVTSSP---SNLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~l 214 (1189)
.+++.|+|.+|+||||++..+....... =..+.++..... ....+.++...+..+..- ....+..++.....+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 4566789999999999998877532211 123445544322 122222333344333221 11233444433333444
Q ss_pred ccCce-EEEecCC
Q 048135 215 AGQKF-LIVLDNV 226 (1189)
Q Consensus 215 ~~~~~-LlvlDdv 226 (1189)
+.+.| ++|+|-.
T Consensus 177 ~~~~~D~ViIDTp 189 (297)
T 1j8m_F 177 LSEKMEIIIVDTA 189 (297)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 42333 7788865
No 293
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.65 E-value=0.18 Score=49.76 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998763
No 294
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=88.60 E-value=0.81 Score=51.63 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=53.0
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCc-CHHHHHHHHHHHccCC-------CC-----CCCC-------
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDF-DVLKITKAILESVTSS-------PS-----NLKD------- 202 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~-----~~~~------- 202 (1189)
.|.|..|+|||+|+..+.+......-+.++++-+.+.. ...++.+++.+.-... .. ..++
T Consensus 169 gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~ 248 (498)
T 1fx0_B 169 GLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMR 248 (498)
T ss_dssp EEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTT
T ss_pred EeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHH
Confidence 49999999999999988875322224677888887765 4666777776542111 00 0111
Q ss_pred hhHHHHHHHHHHc---cCceEEEecCC
Q 048135 203 LNQVQIQLEKAIA---GQKFLIVLDNV 226 (1189)
Q Consensus 203 ~~~~~~~l~~~l~---~~~~LlvlDdv 226 (1189)
.......+.++++ ++.+|+++||+
T Consensus 249 ~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 249 VGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1112234556665 47899999998
No 295
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.50 E-value=0.34 Score=47.71 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=58.2
Q ss_pred hhhhhcCCCcceEEEeccC-CCc-----ccCccccCcccccEEeccccccc-----cccccccCCCCCcEEeccCccccc
Q 048135 516 LSDLLPKFKKLRVLSLKSY-HII-----ELPNSIGRLMHLRYLDMSNTAIS-----SLPESTCSLINLQTLLLRRCFYLM 584 (1189)
Q Consensus 516 ~~~~~~~l~~Lr~L~L~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~i~-----~LP~~i~~L~~L~~L~L~~~~~l~ 584 (1189)
+...+..-+.|+.|+|+++ .|. .+-+.+..=..|+.|+|++|.|. .|-+.+..-+.|++|+|++| .+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCC
Confidence 3445566678999999875 654 24455666678899999988776 34555666678888888887 343
Q ss_pred c-----CchhhhccccCCcccccCC
Q 048135 585 K-----WPSKVMNLINLRHLDITDV 604 (1189)
Q Consensus 585 ~-----lp~~i~~L~~L~~L~l~~~ 604 (1189)
. +-+.+..-+.|++|+|+++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 2 2223334456777777654
No 296
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.37 E-value=0.2 Score=50.11 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=19.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+.++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999998865
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.32 E-value=0.17 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998764
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.12 E-value=0.94 Score=50.49 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCcccc----C-cCceEEEEecCCcCHHHHHHHHHHHcc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVE----G-FNPKAWVCVSEDFDVLKITKAILESVT 194 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~----~-f~~~~wv~~~~~~~~~~~~~~i~~~l~ 194 (1189)
.++.|+|.+|+|||||+..+.-..... . -..++|++....+....+ +.+++.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 345699999999999999664211111 1 235788877666665544 33555554
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.07 E-value=0.2 Score=50.27 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|+|+.|+||||+|+.+...
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999998763
No 300
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.06 E-value=0.2 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999998763
No 301
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.04 E-value=0.65 Score=52.03 Aligned_cols=25 Identities=36% Similarity=0.198 Sum_probs=20.3
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcC
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+++.|+|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456779999999999999888754
No 302
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.99 E-value=0.65 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=19.5
Q ss_pred CCCCeEEccCCCcHHHHHHHHhc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
++++.|+|.+|+||||++..+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 45677999999999999987765
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.90 E-value=0.17 Score=50.41 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998763
No 304
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.87 E-value=0.21 Score=48.63 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998763
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.65 E-value=0.2 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|+.|+||||+|+.+...
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999874
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.58 E-value=0.22 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++.|+|+.|.||||+|+.+...
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4669999999999999998864
No 307
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.55 E-value=1.2 Score=48.81 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccC-c---Cc-eEEEEecCCcCHHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEG-F---NP-KAWVCVSEDFDVLKITKAILES 192 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~-f---~~-~~wv~~~~~~~~~~~~~~i~~~ 192 (1189)
+++.|+|..|+|||||+..+........ . .. ++||+....+....+ ..+.+.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~ 188 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQN 188 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHH
Confidence 3456999999999999998876421111 1 23 488877665543333 334443
No 308
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.52 E-value=0.23 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..+.|+|+.|+||||+|+.+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999876
No 309
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.51 E-value=0.22 Score=48.61 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.2
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|+|..|+|||||++.+...
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999988754
No 310
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.43 E-value=0.25 Score=48.83 Aligned_cols=25 Identities=16% Similarity=0.490 Sum_probs=20.8
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcC
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.+.|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3456779999999999999998753
No 311
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.30 E-value=0.16 Score=62.86 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=19.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcCc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
.+.++|.+|+||||+|+++....
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHH
T ss_pred eeEEECCCCCCHHHHHHHHHHHh
Confidence 35599999999999999998743
No 312
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=87.29 E-value=0.21 Score=48.49 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=17.8
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|..|+|||||++.++.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 456999999999999997553
No 313
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.25 E-value=0.21 Score=50.16 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.6
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|+.|+||||+|+.+...
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHh
Confidence 468999999999999998864
No 314
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.25 E-value=0.23 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.1
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+++.|+|+.|+||||+++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45679999999999999999864
No 315
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.23 E-value=0.24 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.7
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+.|+|+.|+||||+|+.+..
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999875
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.18 E-value=0.21 Score=48.41 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999998763
No 317
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.13 E-value=0.22 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 3567999999999999999875
No 318
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.01 E-value=0.22 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999998763
No 319
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=86.81 E-value=0.58 Score=52.53 Aligned_cols=24 Identities=38% Similarity=0.234 Sum_probs=20.1
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++++.++|.+|+||||++..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999888754
No 320
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=86.75 E-value=0.22 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|+|..|.|||||++.+..
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999998875
No 321
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.73 E-value=0.27 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..++|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999998764
No 322
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.72 E-value=0.16 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=15.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999998763
No 323
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.71 E-value=0.86 Score=60.78 Aligned_cols=82 Identities=22% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 214 (1189)
+.+-|+|++|+|||+||.++.......+. .++|+++...++... ++.++.+.. .....++....+++..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~-~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 34559999999999999888764322223 467777777766665 344442211 1223345555555554
Q ss_pred c-cCceEEEecCCC
Q 048135 215 A-GQKFLIVLDNVW 227 (1189)
Q Consensus 215 ~-~~~~LlvlDdv~ 227 (1189)
+ .+.-+||+|.+.
T Consensus 1502 r~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHTCCSEEEESCGG
T ss_pred hcCCCCEEEEcChh
Confidence 3 556799999993
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.71 E-value=0.25 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999998863
No 325
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.70 E-value=0.23 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999998763
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.64 E-value=0.2 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999988753
No 327
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.55 E-value=1.3 Score=47.78 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=20.1
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..++.|+|..|+||||+++.+..-
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346779999999999999988753
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.49 E-value=0.26 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..+.|+|+.|+||||+++.+..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999984
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.49 E-value=0.29 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..++|+|..|+||||+|+.+...
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999998863
No 330
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.45 E-value=0.27 Score=48.65 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.0
Q ss_pred CeEEccCCCcHHHHHHHHhc
Q 048135 142 PTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~ 161 (1189)
+.|+|+.|+||||+++.+..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999975
No 331
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.45 E-value=0.3 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=19.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999998864
No 332
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=86.43 E-value=0.3 Score=49.68 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999875
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.41 E-value=0.26 Score=47.67 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|+.|+||||+|+.+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998763
No 334
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.35 E-value=0.25 Score=49.61 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.3
Q ss_pred CeEEccCCCcHHHHHHHHhc
Q 048135 142 PTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~ 161 (1189)
++|+|+.|+||||+|+.+..
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 56999999999999999876
No 335
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=86.31 E-value=0.61 Score=51.47 Aligned_cols=58 Identities=21% Similarity=0.047 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccccceecCCCCcccCCCCCeEEccCCCcHHHHHHHHhcCc
Q 048135 100 NVGMKYKIKSITCRLEEICKQRVDLGLQIIAGMSSATAWQRPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 100 ~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+..+..+|.+++..++.+.+.+....- .......+.++|+|.+|+|||||...+....
T Consensus 146 ~~~~~~~i~~l~~~l~~~~~~r~~~r~------~r~~~~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 146 IKFYKRRINKLMKELESIKIFKEKSIE------SNKRNNIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------------CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhcCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 456777888888888777654322110 0001122336799999999999999988653
No 336
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.28 E-value=0.18 Score=55.36 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=58.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHH-HHHHHHHccCCCCCCCChhHHHHHHHHHHccCce
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKI-TKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKF 219 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (1189)
.+.|+|..|.||||+.+.+....... ...++ +++.++.....- ...+..+.. ...+.......++..|...+=
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i-~t~ed~~e~~~~~~~~~v~q~~----~~~~~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHI-LTIEDPIEFVHESKKCLVNQRE----VHRDTLGFSEALRSALREDPD 198 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHH-CCCEE-EEEESSCCSCCCCSSSEEEEEE----BTTTBSCHHHHHHHHTTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCC-CCcEE-EEccCcHHhhhhccccceeeee----eccccCCHHHHHHHHhhhCcC
Confidence 34699999999999999886521110 12222 222222110000 000000000 001112344578888888999
Q ss_pred EEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhh
Q 048135 220 LIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVA 260 (1189)
Q Consensus 220 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 260 (1189)
+|++|... +.+.++.+.... ..|.-||+||-..+.+
T Consensus 199 villDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 199 IILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred EEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999995 445555544432 2366688888876554
No 337
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.12 E-value=1.3 Score=47.98 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=32.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESV 193 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 193 (1189)
.+.|.|.+|+||||+|..+.......+ ..++|++. ..+..++...++...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g-~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDD-RGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-CEEEEEES--SSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEeC--CCCHHHHHHHHHHHh
Confidence 456999999999999988865432211 23555544 456677777776554
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.04 E-value=0.3 Score=48.26 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
..+.|.|+.|+||||+|+.+....
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346799999999999999988643
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.94 E-value=0.29 Score=51.06 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|+.|+||||+|+++...
T Consensus 4 i~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhc
Confidence 458999999999999999764
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.93 E-value=0.3 Score=48.16 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=18.2
Q ss_pred CeEEccCCCcHHHHHHHHhc
Q 048135 142 PTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~ 161 (1189)
+.|.|+.|+||||+|+.+..
T Consensus 7 I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999875
No 341
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.85 E-value=1.4 Score=47.89 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=54.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|..|.|||||++.+..-... -...+.+.-......... + ..+..-. + .-......+...|..++=+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g--gg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHH-K---NYTQLFF-G--GNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSC-S---SEEEEEC-B--TTBCHHHHHHHHTTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccc-h---hEEEEEe-C--CChhHHHHHHHHhhhCCCE
Confidence 3469999999999999998763211 234555532211110000 0 0000000 0 1122334566777888889
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD 258 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 258 (1189)
+++|.+.+ .+.++.+.. +..+ +.-+|+||....
T Consensus 244 lildE~~~--~e~~~~l~~-~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 244 IILGELRS--SEAYDFYNV-LCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp EEECCCCS--THHHHHHHH-HHTT--CCCEEEEEECSS
T ss_pred EEEcCCCh--HHHHHHHHH-HhcC--CCEEEEEEcccH
Confidence 99999954 345554433 3222 223666766544
No 342
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.83 E-value=0.29 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999998763
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.82 E-value=0.29 Score=50.18 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.9
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|+.|+||||+|+.+..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999876
No 344
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=85.73 E-value=0.82 Score=51.01 Aligned_cols=85 Identities=11% Similarity=0.197 Sum_probs=49.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCcccc--CcC-ceEEEEecCCc-CHHHHHHHHHHHccCC-------CCCCCChhH-----
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVE--GFN-PKAWVCVSEDF-DVLKITKAILESVTSS-------PSNLKDLNQ----- 205 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~--~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 205 (1189)
+.|.|..|+|||+|+.++.+..... .-+ .++++-+.+.. .+.++.+++.+.-... ..+......
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~ 233 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR 233 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence 3599999999999999988754431 111 45566666553 4556666655431110 011111111
Q ss_pred HHHHHHHHHc---cCceEEEecCC
Q 048135 206 VQIQLEKAIA---GQKFLIVLDNV 226 (1189)
Q Consensus 206 ~~~~l~~~l~---~~~~LlvlDdv 226 (1189)
....+.++++ ++.+|+++||+
T Consensus 234 ~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 234 MALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1123556664 68999999999
No 345
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=85.70 E-value=0.79 Score=51.48 Aligned_cols=84 Identities=10% Similarity=0.188 Sum_probs=50.4
Q ss_pred eEEccCCCcHHHHHHHHhcCccccCc---CceEEEEecCCc-CHHHHHHHHHHHccCC-------CCCCCChhH-----H
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVEGF---NPKAWVCVSEDF-DVLKITKAILESVTSS-------PSNLKDLNQ-----V 206 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~~f---~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~ 206 (1189)
.|.|-.|+|||+|+.++.++....+. +.++++-+.+.. .+.++.+++.+.-... ..+...... .
T Consensus 156 ~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~ 235 (469)
T 2c61_A 156 PIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRM 235 (469)
T ss_dssp CEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHH
Confidence 49999999999999999876544221 345666666554 4566666665431111 011111111 1
Q ss_pred HHHHHHHHc---cCceEEEecCC
Q 048135 207 QIQLEKAIA---GQKFLIVLDNV 226 (1189)
Q Consensus 207 ~~~l~~~l~---~~~~LlvlDdv 226 (1189)
...+.++++ ++.+|+++||+
T Consensus 236 a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 236 ALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCH
Confidence 123455554 68999999997
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.65 E-value=0.26 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.1
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..++|+|+.|+||||+|+.+...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 45789999999999999999873
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.60 E-value=0.31 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|++|+||||+|+.+...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3569999999999999998863
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=85.50 E-value=0.33 Score=48.84 Aligned_cols=21 Identities=43% Similarity=0.423 Sum_probs=18.6
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|+.|+||||+++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999875
No 349
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.50 E-value=1.8 Score=50.41 Aligned_cols=51 Identities=8% Similarity=-0.073 Sum_probs=33.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESV 193 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 193 (1189)
.+.|.|.+|+||||+|.++..+...+.=..++|++.. .+..++...++...
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E--~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE--ESVEETAEDLIGLH 294 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc--CCHHHHHHHHHHHH
Confidence 4558999999999999888764332211246676554 34667777665543
No 350
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.49 E-value=0.35 Score=50.06 Aligned_cols=23 Identities=43% Similarity=0.626 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999863
No 351
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.35 E-value=0.37 Score=48.72 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
..+.|.|+.|+||||+|+.+....
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999988643
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.33 E-value=0.84 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.5
Q ss_pred CCCCeEEccCCCcHHHHHHHHhc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+.+++|.|..|+||||+|+.+..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999988864
No 353
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=85.28 E-value=0.28 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=19.4
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhc
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++++|.|-|||||||.|..+..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 346788999999999999866543
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.28 E-value=0.3 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999998763
No 355
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.26 E-value=0.33 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|..|+||||+++.+..
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998876
No 356
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.25 E-value=0.35 Score=46.41 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=19.9
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+++.|+|..|+||||++..+....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 345699999999999999988643
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=85.23 E-value=0.32 Score=49.03 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+++|+|..|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3467999999999999999875
No 358
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.99 E-value=0.32 Score=49.90 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999863
No 359
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.96 E-value=0.33 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.364 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999864
No 360
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=84.92 E-value=1.5 Score=49.60 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=47.2
Q ss_pred eEEccCCCcHHHHH-HHHhcCccccCcCc-eEEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhHH-----H
Q 048135 143 TLVGMGGIGKTTLA-RLVYNDKEVEGFNP-KAWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQV-----Q 207 (1189)
Q Consensus 143 ~I~G~gG~GKTtla-~~v~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~~-----~ 207 (1189)
.|+|..|+|||+|| ..+.+.. .-+. ++++-+++.. .+.++.+.+.+.-.... .+....... .
T Consensus 166 ~Ifg~~g~GKT~Lal~~I~~~~---~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a 242 (502)
T 2qe7_A 166 LIIGDRQTGKTTIAIDTIINQK---GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAG 242 (502)
T ss_dssp EEEECSSSCHHHHHHHHHHGGG---SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHhh---cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 39999999999996 4677642 2442 4667777664 45556666654221111 111111111 1
Q ss_pred HHHHHHH--ccCceEEEecCC
Q 048135 208 IQLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 208 ~~l~~~l--~~~~~LlvlDdv 226 (1189)
..+.+++ +++.+|+++||+
T Consensus 243 ~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 243 CAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHcCCcEEEEEecH
Confidence 2344555 578999999998
No 361
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=84.81 E-value=0.89 Score=50.72 Aligned_cols=84 Identities=8% Similarity=0.164 Sum_probs=49.3
Q ss_pred eEEccCCCcHHHHHHHHhcCcccc---------CcC-ceEEEEecCCc-CHHHHHHHHHHHccCC-------CCCCCChh
Q 048135 143 TLVGMGGIGKTTLARLVYNDKEVE---------GFN-PKAWVCVSEDF-DVLKITKAILESVTSS-------PSNLKDLN 204 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~~~~~---------~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~ 204 (1189)
.|.|..|+|||+|+.++.+..... +-+ .++++-+.+.. .+.++.+++.+.-... ..+.....
T Consensus 151 ~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~ 230 (464)
T 3gqb_B 151 PIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIE 230 (464)
T ss_dssp CEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHH
T ss_pred EEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHH
Confidence 499999999999999988754431 111 45666666553 4555666554421000 01111111
Q ss_pred H-----HHHHHHHHHc---cCceEEEecCC
Q 048135 205 Q-----VQIQLEKAIA---GQKFLIVLDNV 226 (1189)
Q Consensus 205 ~-----~~~~l~~~l~---~~~~LlvlDdv 226 (1189)
. ....+.++++ ++.+|+++||+
T Consensus 231 r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 231 RILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1 1223556664 68999999998
No 362
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.69 E-value=0.9 Score=48.48 Aligned_cols=25 Identities=36% Similarity=0.198 Sum_probs=20.4
Q ss_pred CCCCCeEEccCCCcHHHHHHHHhcC
Q 048135 138 WQRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 138 ~~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+++.|+|.+|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456779999999999999888753
No 363
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.63 E-value=0.35 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=20.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
..+.|.|+.|+||||+|+.+....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998643
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.62 E-value=0.35 Score=48.06 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.6
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|+.|+||||+|+.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999874
No 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.56 E-value=0.36 Score=48.98 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.+.|+|+.|+|||||++.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 45679999999999999998764
No 366
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=84.50 E-value=0.36 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+++|+|..|+||||+|+.+...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999887653
No 367
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.38 E-value=0.38 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|+|+.|+||||+|+.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999985
No 368
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.31 E-value=0.44 Score=46.94 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=18.6
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|..|+||||+++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 3569999999999999888653
No 369
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=84.01 E-value=1.1 Score=50.54 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=46.9
Q ss_pred EEccCCCcHHHHH-HHHhcCccccCcCc-eEEEEecCCc-CHHHHHHHHHHHccCC-------CCCCCChhHH-----HH
Q 048135 144 LVGMGGIGKTTLA-RLVYNDKEVEGFNP-KAWVCVSEDF-DVLKITKAILESVTSS-------PSNLKDLNQV-----QI 208 (1189)
Q Consensus 144 I~G~gG~GKTtla-~~v~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~-----~~ 208 (1189)
|+|..|+|||+|| ..+.+.. .-+. ++++-+++.. .+.++.+.+.+.-... ..+....... ..
T Consensus 180 I~g~~g~GKT~Lal~~I~~~~---~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ 256 (515)
T 2r9v_A 180 IIGDRQTGKTAIAIDTIINQK---GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGC 256 (515)
T ss_dssp EEEETTSSHHHHHHHHHHTTT---TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCccHHHHHHHHHhh---cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999996 5677642 2443 4667777664 4556666665421111 1111111111 12
Q ss_pred HHHHHH--ccCceEEEecCC
Q 048135 209 QLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 209 ~l~~~l--~~~~~LlvlDdv 226 (1189)
.+.+++ +++.+|+++||+
T Consensus 257 tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 257 AMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHcCCcEEEEeccH
Confidence 344555 578999999998
No 370
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=84.00 E-value=0.36 Score=51.98 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+++|+|..|+|||||++.+..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHh
Confidence 4578999999999999998875
No 371
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.96 E-value=0.31 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|++|+||||+|+.+...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999763
No 372
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=83.82 E-value=1.3 Score=48.23 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=24.0
Q ss_pred EEccCCCcHHHHHHHHhcCccccC--cCceEEEEecCC
Q 048135 144 LVGMGGIGKTTLARLVYNDKEVEG--FNPKAWVCVSED 179 (1189)
Q Consensus 144 I~G~gG~GKTtla~~v~~~~~~~~--f~~~~wv~~~~~ 179 (1189)
|+|..|+|||+|++++.+...... +. ++++-+++.
T Consensus 180 Ifg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 180 IVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred EecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 999999999999998887432211 33 245556554
No 373
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.81 E-value=0.41 Score=47.37 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++|.|+.|+||||+|+.+..
T Consensus 14 iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998876
No 374
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=83.76 E-value=0.4 Score=48.68 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.2
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|+.|+||||+|+.+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998753
No 375
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=83.76 E-value=0.45 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=19.8
Q ss_pred CCCCeEEccCCCcHHHHHHHHhc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++.|+|.+|+||||+++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35678999999999999998875
No 376
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=83.74 E-value=0.4 Score=45.61 Aligned_cols=21 Identities=43% Similarity=0.362 Sum_probs=18.5
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++|+|..|.|||||++.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999998875
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.72 E-value=0.4 Score=47.73 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.6
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|.|+.|+||||+|+.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998864
No 378
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=83.61 E-value=0.44 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=19.2
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+++|.|..|+||||+|+.+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999998875
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=83.60 E-value=0.41 Score=48.60 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.2
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|+.|+||||+|+.+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998753
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.51 E-value=0.42 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 34679999999999999999874
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=83.44 E-value=0.23 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|.|..|+||||+|+.+...
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 569999999999999998764
No 382
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=83.28 E-value=0.41 Score=49.75 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.7
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++|.|..|+||||+|+.+..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998865
No 383
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=83.09 E-value=0.81 Score=53.96 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=52.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHH-----
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAI----- 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----- 214 (1189)
+.+.|.|.+|.||||++..+....... ...+.+......-. ..+.+.++.. ..++..+.......+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~ApT~~Aa----~~L~e~~~~~---a~Tih~ll~~~~~~~~~~~~ 275 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL--GLEVGLCAPTGKAA----RRLGEVTGRT---ASTVHRLLGYGPQGFRHNHL 275 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHH----HHHHHHHTSC---EEEHHHHTTEETTEESCSSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEecCcHHHH----HHhHhhhccc---HHHHHHHHcCCcchhhhhhc
Confidence 445699999999999998887533222 22344433222112 2222222211 111111000000000
Q ss_pred -ccCceEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcC
Q 048135 215 -AGQKFLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTR 255 (1189)
Q Consensus 215 -~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 255 (1189)
..+-=+||+|.+..-+...+..+...++ .|.++|+.--
T Consensus 276 ~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 276 EPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred ccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0022489999997666667777777665 4667776543
No 384
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=83.01 E-value=0.73 Score=45.36 Aligned_cols=90 Identities=18% Similarity=0.090 Sum_probs=63.5
Q ss_pred hhhhhcCCCcceEEEeccCCCcc-----cCccccCcccccEEeccccccc-----cccccccCCCCCcEEeccCccc--c
Q 048135 516 LSDLLPKFKKLRVLSLKSYHIIE-----LPNSIGRLMHLRYLDMSNTAIS-----SLPESTCSLINLQTLLLRRCFY--L 583 (1189)
Q Consensus 516 ~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~-----~LP~~i~~L~~L~~L~L~~~~~--l 583 (1189)
+-..+..-..|+.|+|++|.+.. +-+.+..=+.|++|+|++|.|. .|-+.+..-+.|++|+|++|.. +
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 33455666789999999999863 4455556678999999999887 3556666677899999986532 2
Q ss_pred c-----cCchhhhccccCCcccccCCc
Q 048135 584 M-----KWPSKVMNLINLRHLDITDVH 605 (1189)
Q Consensus 584 ~-----~lp~~i~~L~~L~~L~l~~~~ 605 (1189)
. .+-..+..=+.|+.|+++.+.
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2 123334555788888887654
No 385
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.00 E-value=0.43 Score=50.67 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.8
Q ss_pred CCCeEEccCCCcHHHHHHHHh
Q 048135 140 RPPTLVGMGGIGKTTLARLVY 160 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~ 160 (1189)
..++|.|+.|+||||+|+.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999887
No 386
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.91 E-value=0.39 Score=50.16 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+++|.|+.|+||||+|+.+...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988763
No 387
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=82.90 E-value=1.9 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.3
Q ss_pred CCCCeEEccCCCcHHHHHHHHhc
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
++++.|+|.+|+||||++..+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999988874
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=82.87 E-value=0.46 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999998763
No 389
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.78 E-value=0.38 Score=47.34 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=18.3
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|++|+||||+|.++++.
T Consensus 61 ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999888764
No 390
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=82.70 E-value=2.5 Score=47.65 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=47.3
Q ss_pred eEEccCCCcHHHHH-HHHhcCccccCcCc-eEEEEecCCc-CHHHHHHHHHHHccCCC-------CCCCChhH-----HH
Q 048135 143 TLVGMGGIGKTTLA-RLVYNDKEVEGFNP-KAWVCVSEDF-DVLKITKAILESVTSSP-------SNLKDLNQ-----VQ 207 (1189)
Q Consensus 143 ~I~G~gG~GKTtla-~~v~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~ 207 (1189)
.|.|-.|+|||+|| ..+.+. +.-+. ++++-+++.. .+.++.+.+.+.-.... .+.....+ ..
T Consensus 166 ~Ifg~~g~GKT~l~l~~I~n~---~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a 242 (513)
T 3oaa_A 166 LIIGDRQTGKTALAIDAIINQ---RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAG 242 (513)
T ss_dssp EEEESSSSSHHHHHHHHHHTT---SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EeecCCCCCcchHHHHHHHhh---ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHH
Confidence 39999999999997 567663 22343 5677787764 45566666544311111 11111111 11
Q ss_pred HHHHHHH--ccCceEEEecCC
Q 048135 208 IQLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 208 ~~l~~~l--~~~~~LlvlDdv 226 (1189)
..+.+++ +++.+|+++||+
T Consensus 243 ~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 243 CAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHhcCCCEEEEecCh
Confidence 2234444 578999999999
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.59 E-value=0.47 Score=48.05 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.3
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|+.|+||||+|+.+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998763
No 392
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=82.24 E-value=1.5 Score=49.73 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=26.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFD 181 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~ 181 (1189)
.++.|+|..|+||||+++.+..-... -.+.+++.....+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFR 333 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccc
Confidence 45679999999999999988763221 23445554344444
No 393
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=82.22 E-value=0.57 Score=47.20 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..++|+|..|.|||||++.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999998763
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=82.18 E-value=0.5 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.352 Sum_probs=19.1
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999998764
No 395
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.16 E-value=0.5 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.6
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|+.|+||||+|+.+...
T Consensus 8 I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998764
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.11 E-value=0.54 Score=47.90 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..++|.|+.|+||||+|+.+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999998763
No 397
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=82.09 E-value=0.96 Score=46.22 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=24.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceE
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKA 172 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~ 172 (1189)
..++|.|+.|+||||+++.+.......++..+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~ 60 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHIT 60 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeee
Confidence 456799999999999999998755444455333
No 398
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.90 E-value=0.52 Score=48.09 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.2
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|.|+.|+||||+|+.+...
T Consensus 3 I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998763
No 399
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.75 E-value=0.34 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|..|+|||||++.+..-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999988753
No 400
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=81.66 E-value=0.53 Score=49.03 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=18.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|+|..|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3567999999999999998873
No 401
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=81.63 E-value=0.52 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.9
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|..|+|||||.+.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999886
No 402
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=81.54 E-value=0.63 Score=46.71 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=53.3
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCC--ChhHHHHHHHHHH
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLK--DLNQVQIQLEKAI 214 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~--~~~~~~~~l~~~l 214 (1189)
+.+.|.||+||||+|..+......++++ +..+.+........ ...+..+..... ... ...+ +...+
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~----l~~~L 81 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMD----LDALL 81 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECC----HHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCccccccc----HHHHH
Confidence 3478999999999988777643333354 33444543322221 122222221110 000 0011 12223
Q ss_pred ccCceEEEecCCCCC------ChhhHHhhccccCCCCCCcEEEEEcCCch
Q 048135 215 AGQKFLIVLDNVWSK------NYGLWKTLKSPFMAGTPGSKIIVTTRSVD 258 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 258 (1189)
..+.=++|+|+.-.. ....|..+...++ .|-.|++|+.-.+
T Consensus 82 ~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlqh 128 (228)
T 2r8r_A 82 KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQH 128 (228)
T ss_dssp HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGGG
T ss_pred hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEccccc
Confidence 335669999987321 1135666655333 3556888877443
No 403
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=81.52 E-value=0.51 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.3
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++++.|.|++|+||||.|+.+...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 355668999999999999998864
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=81.38 E-value=0.6 Score=47.43 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|.|+.|+||||+|+.+..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999865
No 405
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=81.32 E-value=0.54 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|+|..|+|||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3467999999999999999876
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.15 E-value=1.1 Score=44.90 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=23.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCce
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPK 171 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~ 171 (1189)
.++|-|..|+||||+++.+.......++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v 35 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDM 35 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 4568999999999999999875544445333
No 407
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=81.14 E-value=1.3 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.6
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.+.++|++|+|||++|+++.+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999874
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.14 E-value=0.57 Score=48.18 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999864
No 409
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=80.95 E-value=1.7 Score=49.27 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=47.2
Q ss_pred eEEccCCCcHHHHH-HHHhcCccc-----cCcC-ceEEEEecCCc-CHHHHHHHHHHHccCC-------CCCCCChhHH-
Q 048135 143 TLVGMGGIGKTTLA-RLVYNDKEV-----EGFN-PKAWVCVSEDF-DVLKITKAILESVTSS-------PSNLKDLNQV- 206 (1189)
Q Consensus 143 ~I~G~gG~GKTtla-~~v~~~~~~-----~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~- 206 (1189)
.|+|..|+|||+|| ..+.+.... ..-+ .++++-+.+.. .+.++.+.+.+.-... ..+.......
T Consensus 166 ~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 245 (510)
T 2ck3_A 166 LIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYL 245 (510)
T ss_dssp EEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHH
T ss_pred EEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHH
Confidence 39999999999995 456654321 0133 35677777664 4555666655421111 1111111111
Q ss_pred ----HHHHHHHH--ccCceEEEecCC
Q 048135 207 ----QIQLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 207 ----~~~l~~~l--~~~~~LlvlDdv 226 (1189)
...+.+++ +++.+|+++||+
T Consensus 246 a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 246 APYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 12344555 578999999998
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.95 E-value=0.41 Score=49.20 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=14.9
Q ss_pred CCCeEEccCCCcHHHHHHHHh-c
Q 048135 140 RPPTLVGMGGIGKTTLARLVY-N 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~-~ 161 (1189)
.+++|+|+.|+||||+++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 456799999999999999988 5
No 411
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=80.88 E-value=0.59 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|+|..|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4567999999999999999876
No 412
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.74 E-value=0.6 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+++|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999998763
No 413
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=80.49 E-value=0.39 Score=50.19 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=19.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|+|++|+||||+|+.+...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999998763
No 414
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=80.45 E-value=0.66 Score=45.51 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||++.+...
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999998863
No 415
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=80.43 E-value=1.2 Score=50.48 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=45.4
Q ss_pred eEEccCCCcHHHHH-HHHhcCccccCcCc-eEEEEecCCc-CHHHHHHHHHHHccCC-------CCCCCCh-----hHHH
Q 048135 143 TLVGMGGIGKTTLA-RLVYNDKEVEGFNP-KAWVCVSEDF-DVLKITKAILESVTSS-------PSNLKDL-----NQVQ 207 (1189)
Q Consensus 143 ~I~G~gG~GKTtla-~~v~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~~~~ 207 (1189)
.|+|..|+|||+|| ..+.+.. .-+. ++++-+++.. .+.++.+.+.+.-... ..+.... ....
T Consensus 167 ~Ifg~~g~GKT~Lal~~I~~~~---~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a 243 (507)
T 1fx0_A 167 LIIGDRQTGKTAVATDTILNQQ---GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTG 243 (507)
T ss_dssp BEEESSSSSHHHHHHHHHHTCC---TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHH
T ss_pred EEecCCCCCccHHHHHHHHHhh---cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHH
Confidence 39999999999996 5777642 2443 4667777664 3444444443321000 0111111 1112
Q ss_pred HHHHHHH--ccCceEEEecCC
Q 048135 208 IQLEKAI--AGQKFLIVLDNV 226 (1189)
Q Consensus 208 ~~l~~~l--~~~~~LlvlDdv 226 (1189)
..+.+++ +++.+|+++||+
T Consensus 244 ~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 244 AALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHcCCcEEEEEecH
Confidence 2233444 588999999998
No 416
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=80.39 E-value=0.66 Score=47.50 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=18.6
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+.|+|..|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999865
No 417
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=80.37 E-value=0.67 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+++.|+|++|+||||+|+.+..+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999998864
No 418
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=80.35 E-value=0.75 Score=44.15 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.6
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||.+.+...
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999998764
No 419
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=80.33 E-value=0.67 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.+.|+|..|+||||+++.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 34569999999999999988764
No 420
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.25 E-value=0.63 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|.|+.|+||||+|+.+...
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999998753
No 421
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=80.24 E-value=0.67 Score=45.85 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|+|..|+|||||.+.+...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 569999999999999998764
No 422
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=80.23 E-value=0.62 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|+|..|+|||||++.+..-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999764
No 423
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.87 E-value=0.64 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=19.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++.|.|+.|+||||+|+.+...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 5679999999999999998864
No 424
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=79.82 E-value=0.64 Score=48.71 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3467999999999999999986
No 425
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=79.75 E-value=0.64 Score=48.61 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.9
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++|+|..|+|||||++.+..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999876
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=79.64 E-value=0.56 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.7
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999886
No 427
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=79.58 E-value=0.64 Score=49.74 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++.|+|..|+||||+++.+..-
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 45679999999999999988753
No 428
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=79.57 E-value=0.62 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|+.|+||||+|+.+...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999864
No 429
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=79.47 E-value=0.67 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+++|+|..|+|||||++.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 3567999999999999999876
No 430
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=79.46 E-value=0.71 Score=48.55 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.7
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++|+|..|+|||||++.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 467999999999999999875
No 431
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=79.45 E-value=0.65 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+++|+|..|+||||+++.+..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998876
No 432
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.28 E-value=0.69 Score=47.70 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=19.0
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|..|.|||||.+.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999876
No 433
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=79.27 E-value=0.69 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|+|..|.|||||.+.+..-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999764
No 434
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=79.25 E-value=1.3 Score=50.98 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=24.8
Q ss_pred eEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD 258 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 258 (1189)
-++|+|++..-+...+..+...++ .+.+|++.--..+
T Consensus 130 ~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 130 RVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp SEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred CEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 488999997766666776666554 4667777654443
No 435
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=79.06 E-value=0.7 Score=48.22 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.9
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++|+|..|+|||||.+.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999875
No 436
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=79.06 E-value=0.58 Score=46.92 Aligned_cols=20 Identities=35% Similarity=0.180 Sum_probs=17.9
Q ss_pred CeEEccCCCcHHHHHHHHhc
Q 048135 142 PTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~ 161 (1189)
++|+|..|.|||||++.+..
T Consensus 25 ~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46999999999999998875
No 437
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=78.92 E-value=0.81 Score=45.59 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.6
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++|+|..|+|||||.+.+...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 469999999999999998764
No 438
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=78.84 E-value=0.75 Score=47.73 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.1
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++|+|..|.|||||++.+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999987
No 439
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=78.73 E-value=0.73 Score=47.70 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|..|.|||||++.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999875
No 440
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.51 E-value=0.75 Score=47.85 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=18.9
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++|+|..|+|||||.+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999876
No 441
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=78.43 E-value=0.86 Score=43.29 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.4
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||+..+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999998764
No 442
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=78.41 E-value=0.79 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|+|..|.|||||++.+..-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999873
No 443
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=78.41 E-value=2 Score=42.50 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=21.0
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcC
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFN 169 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~ 169 (1189)
++|=|.-|+||||.++.+.+..+.++.+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~ 30 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCc
Confidence 3467999999999999998754443343
No 444
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=78.39 E-value=0.75 Score=48.02 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|..|.|||||++.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999875
No 445
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.35 E-value=0.69 Score=48.99 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++.|+|+.|+||||||..+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4569999999999999999864
No 446
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=78.13 E-value=0.78 Score=47.47 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|+|..|.|||||.+.+..-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4579999999999999998863
No 447
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=78.08 E-value=0.87 Score=43.39 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=18.4
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||+..+...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999998764
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.99 E-value=0.77 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+++.|+|+.|+||||||..+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45679999999999999999864
No 449
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=77.99 E-value=0.79 Score=48.21 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|..|.|||||++.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999875
No 450
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=77.91 E-value=0.85 Score=47.12 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.6
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|..|.|||||++.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999875
No 451
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=77.85 E-value=0.97 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|.+|+|||||...+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3579999999999999999874
No 452
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=77.83 E-value=0.83 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=18.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|.+|+|||||+..+...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3569999999999999888764
No 453
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=77.78 E-value=0.88 Score=47.79 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=17.9
Q ss_pred CeEEccCCCcHHHHHHHHhc
Q 048135 142 PTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~ 161 (1189)
++|+|..|+|||||.+.++.
T Consensus 5 v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 45999999999999998876
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.72 E-value=0.95 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|.|+.|+||||+|+.+..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998876
No 455
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=77.72 E-value=0.82 Score=48.68 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.0
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|+|..|.|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3467999999999999998875
No 456
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=77.65 E-value=0.93 Score=50.02 Aligned_cols=22 Identities=36% Similarity=0.240 Sum_probs=19.7
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+.+.|+|+.|.|||||++.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999986
No 457
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.61 E-value=3.2 Score=55.56 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=52.9
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH-
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI- 214 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l- 214 (1189)
.+.|+|.+|+||||||.++....... =..++|++....++... ++.++.+.. +..+.+++...+++..
T Consensus 385 lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~ 458 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALAR 458 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHH
Confidence 44599999999999998887643221 23578887777666542 445544322 2345666666666544
Q ss_pred ccCceEEEecCCCC
Q 048135 215 AGQKFLIVLDNVWS 228 (1189)
Q Consensus 215 ~~~~~LlvlDdv~~ 228 (1189)
+.+.-+||+|-+..
T Consensus 459 ~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 459 SGAVDVIVVDSVAA 472 (2050)
T ss_dssp HTCCSEEEESCGGG
T ss_pred hcCCcEEEECCHHH
Confidence 34566999999843
No 458
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=77.53 E-value=0.96 Score=47.40 Aligned_cols=20 Identities=40% Similarity=0.449 Sum_probs=17.5
Q ss_pred CeEEccCCCcHHHHHHHHhc
Q 048135 142 PTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~ 161 (1189)
+.+.|.||+||||++..+..
T Consensus 17 ~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHH
Confidence 45899999999999998874
No 459
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=77.50 E-value=0.83 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|..|.|||||++.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 467999999999999999875
No 460
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.50 E-value=0.46 Score=50.61 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=16.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.+++|.|..|+||||+|+.+..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998876
No 461
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=77.37 E-value=1.5 Score=44.36 Aligned_cols=31 Identities=32% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccc-cCcCce
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEV-EGFNPK 171 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~-~~f~~~ 171 (1189)
.++|.|+.|+||||+++.+.+.... .+++..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~ 54 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNV 54 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceee
Confidence 4668899999999999999875544 335443
No 462
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=77.33 E-value=0.94 Score=43.36 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.4
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||+..+.+.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 459999999999999998764
No 463
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=77.33 E-value=0.93 Score=44.62 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=18.6
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||+..+...
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 469999999999999998765
No 464
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=77.33 E-value=0.84 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|+|..|.|||||++.+..-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999999863
No 465
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.32 E-value=1 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.7
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++.|+|+.|+||||||..+...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999874
No 466
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=77.29 E-value=0.88 Score=49.20 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|+.|+||||+|+.++..
T Consensus 27 i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 569999999999999988763
No 467
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=77.29 E-value=0.84 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|+|..|+|||||.+.+..-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998763
No 468
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.26 E-value=0.86 Score=48.34 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=18.8
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
+++.|+|.+|+||||||..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4567999999999999988764
No 469
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=77.15 E-value=1.1 Score=43.39 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||...+...
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 469999999999999998764
No 470
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=77.05 E-value=0.84 Score=49.26 Aligned_cols=24 Identities=38% Similarity=0.320 Sum_probs=20.0
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+++.|+|.+|+||||++..+...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999887653
No 471
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=76.95 E-value=1.1 Score=43.91 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.3
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
...|+|..|.|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999864
No 472
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=76.93 E-value=1.1 Score=43.37 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.7
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||...+...
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999998864
No 473
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=76.67 E-value=1.4 Score=42.66 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.5
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
..+.|+|.+|+|||||...+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34679999999999999998764
No 474
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=76.61 E-value=0.86 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++.|+|..|+||||+++.+..-
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 45679999999999999988753
No 475
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=76.55 E-value=0.96 Score=46.19 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=20.4
Q ss_pred CCeEEccCCCcHHHHHHHHhcCcc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKE 164 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~ 164 (1189)
.++|.|+.|+||||+++.+.....
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999987543
No 476
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.16 E-value=2.7 Score=55.37 Aligned_cols=81 Identities=21% Similarity=0.155 Sum_probs=53.6
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHH
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAI 214 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 214 (1189)
|++-|+|+.|+||||||.++....... =..++|+.+....+... ++.++.+.. ....-++....+...+
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~-g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~ 1505 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 1505 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHH
Confidence 456699999999999998887532211 35678888777766654 667665533 2233355555555555
Q ss_pred c-cCceEEEecCC
Q 048135 215 A-GQKFLIVLDNV 226 (1189)
Q Consensus 215 ~-~~~~LlvlDdv 226 (1189)
+ +..-++|+|-|
T Consensus 1506 ~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1506 RSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHTCCSEEEESCS
T ss_pred HcCCCCEEEEccH
Confidence 4 45558999988
No 477
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=76.09 E-value=1.1 Score=42.93 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.1
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||...+.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 458999999999999988653
No 478
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=76.02 E-value=1.1 Score=45.02 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNP 170 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~ 170 (1189)
.++|-|+.|+||||+++.+.......++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 456899999999999999987544433554
No 479
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.98 E-value=3 Score=54.99 Aligned_cols=82 Identities=20% Similarity=0.124 Sum_probs=52.5
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCC-----CCCChhHHHHHHHHHHc
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPS-----NLKDLNQVQIQLEKAIA 215 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~ 215 (1189)
++.|+|.+|+||||||.++....... =..++|++....++... ++.++.+.. ...+.++....++...+
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~ 458 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALAR 458 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHHHH
Confidence 44599999999999998876542211 24678888777776542 445543321 22355666666655443
Q ss_pred -cCceEEEecCCCC
Q 048135 216 -GQKFLIVLDNVWS 228 (1189)
Q Consensus 216 -~~~~LlvlDdv~~ 228 (1189)
.+.-++|+|-+..
T Consensus 459 ~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 459 SGAVDVIVVDSVAA 472 (1706)
T ss_dssp HTCCSEEEESCSTT
T ss_pred hcCCCEEEECCHHH
Confidence 4556999999843
No 480
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=75.95 E-value=1.1 Score=44.24 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|.+|+|||||...+...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999998764
No 481
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=75.93 E-value=0.91 Score=51.25 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.5
Q ss_pred CCCCeEEccCCCcHHHHHHHHhcC
Q 048135 139 QRPPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 139 ~~~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
++++.|+|.+|+||||+|..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999887764
No 482
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=75.84 E-value=1.2 Score=42.68 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.5
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||...+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999998764
No 483
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=75.82 E-value=1.1 Score=42.71 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=18.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.|+|.+|+|||||...+....
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 4699999999999999987643
No 484
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=75.77 E-value=1.1 Score=46.70 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=54.3
Q ss_pred CCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHccCceE
Q 048135 141 PPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDLNQVQIQLEKAIAGQKFL 220 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 220 (1189)
.+.|+|..|+||||+++.+..-.... +...+++.- .+... +.+.....+.....+. +...+...+.+.|..++=+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g-~~i~~--~~~~~~~~v~q~~~gl-~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIE-DPIEY--VFKHKKSIVNQREVGE-DTKSFADALRAALREDPDV 101 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEE-SSCCS--CCCCSSSEEEEEEBTT-TBSCHHHHHHHHHHHCCSE
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcC-Cccee--ecCCcceeeeHHHhCC-CHHHHHHHHHHHHhhCCCE
Confidence 45699999999999999886521110 233443321 11000 0000000000000000 1122345677777777778
Q ss_pred EEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCchhh
Q 048135 221 IVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVDVA 260 (1189)
Q Consensus 221 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 260 (1189)
|++|... +.+....+.... ..|.-|++||-+.++.
T Consensus 102 lllDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 102 IFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp EEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred EEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 9999995 333333322222 2466788888776543
No 485
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=75.68 E-value=0.83 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.148 Sum_probs=19.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|.|..|+||||+++.+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998876
No 486
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=75.67 E-value=0.85 Score=50.07 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.7
Q ss_pred CCeEEccCCCcHHHHHHHHhc
Q 048135 141 PPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~ 161 (1189)
.++|+|.+|+|||||..++..
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999998875
No 487
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=75.65 E-value=1.2 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.3
Q ss_pred CCCeEEccCCCcHHHHHHHHhc
Q 048135 140 RPPTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~ 161 (1189)
..++|.|+.|+||||+|+.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999998876
No 488
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=75.61 E-value=0.95 Score=48.80 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCCeEEccCCCcHHHHHHHHhcCccccCcCceEEEEecC
Q 048135 140 RPPTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCVSE 178 (1189)
Q Consensus 140 ~~~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~~~ 178 (1189)
++++|+|-||+||||+|..+.......+. .++-|+...
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~-~VlliD~D~ 79 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGCDP 79 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEESS
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 45678899999999999776543221212 345555543
No 489
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=75.47 E-value=1.3 Score=42.55 Aligned_cols=20 Identities=45% Similarity=0.569 Sum_probs=17.5
Q ss_pred CeEEccCCCcHHHHHHHHhc
Q 048135 142 PTLVGMGGIGKTTLARLVYN 161 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~ 161 (1189)
+.|+|.+|+|||||+..+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 35899999999999998864
No 490
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.45 E-value=1.2 Score=44.60 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.8
Q ss_pred eEEccCCCcHHHHHHHHhcC
Q 048135 143 TLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 143 ~I~G~gG~GKTtla~~v~~~ 162 (1189)
.|.|++|+||+|.|+.+..+
T Consensus 4 il~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999864
No 491
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=75.38 E-value=1.9 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.8
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.+.|+|.+|+|||||+..+...
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4569999999999999888764
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.37 E-value=0.92 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.2
Q ss_pred CCeEEccCCCcHHHHHHHHhcC
Q 048135 141 PPTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 141 ~~~I~G~gG~GKTtla~~v~~~ 162 (1189)
.++|.|..|+||||+|+.+...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3569999999999999998864
No 493
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=75.37 E-value=1.2 Score=44.30 Aligned_cols=106 Identities=11% Similarity=0.058 Sum_probs=49.7
Q ss_pred CeEEccCCCcHHHHHHHHhcCccccCcCceEEEEe-cCCcCHHHHHHHHHHHccCCCC--CCCChhHHHHHHHHHHccCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDKEVEGFNPKAWVCV-SEDFDVLKITKAILESVTSSPS--NLKDLNQVQIQLEKAIAGQK 218 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~ 218 (1189)
..|+|.-|.||||.|.....+...++....++-.. ...+... .+...++.... ...+..+ +.+.+.++-
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~----~i~s~~g~~~~a~~~~~~~~----~~~~~~~~~ 102 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEE----DVVSHNGLKVKAVPVSASKD----IFKHITEEM 102 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CCEEECSSGGG----GGGGCCSSC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHH----HHHhhcCCeeEEeecCCHHH----HHHHHhcCC
Confidence 34899999999999977766544333443333211 1112222 33333322211 1112121 222222333
Q ss_pred eEEEecCCCCCChhhHHhhccccCCCCCCcEEEEEcCCch
Q 048135 219 FLIVLDNVWSKNYGLWKTLKSPFMAGTPGSKIIVTTRSVD 258 (1189)
Q Consensus 219 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 258 (1189)
=+|++|.+.--+.+.++.+.... + .|-.||+|-++.+
T Consensus 103 dvViIDEaQF~~~~~V~~l~~l~-~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 103 DVIAIDEVQFFDGDIVEVVQVLA-N--RGYRVIVAGLDQD 139 (214)
T ss_dssp CEEEECCGGGSCTTHHHHHHHHH-H--TTCEEEEEECSBC
T ss_pred CEEEEECcccCCHHHHHHHHHHh-h--CCCEEEEEecccc
Confidence 39999999654334554443322 2 3678999999654
No 494
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=75.27 E-value=1.1 Score=43.72 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.4
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||+..+.+.
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999998764
No 495
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=75.10 E-value=8.9 Score=53.31 Aligned_cols=150 Identities=12% Similarity=0.028 Sum_probs=0.0
Q ss_pred EEccCCCcHHHHH-HHHhcCccccCcCceEEEEecCCcCHHHHHHHHHHHccCCCCCCCCh-----hHHHHHHHHHHccC
Q 048135 144 LVGMGGIGKTTLA-RLVYNDKEVEGFNPKAWVCVSEDFDVLKITKAILESVTSSPSNLKDL-----NQVQIQLEKAIAGQ 217 (1189)
Q Consensus 144 I~G~gG~GKTtla-~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~~l~~~l~~~ 217 (1189)
++|++|.|||++| +.+....... .+.+..+...+...+++.+-..+.......... . ++
T Consensus 1272 L~GPpGtGKT~la~~~l~~~~~~~----~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~-----------gk 1336 (2695)
T 4akg_A 1272 LCGPPGSGKTMIMNNALRNSSLYD----VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD-----------IK 1336 (2695)
T ss_dssp EECSTTSSHHHHHHHHHHSCSSCE----EEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------SS
T ss_pred EECCCCCCHHHHHHHHHhcCCCCc----eEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------Cc
Q ss_pred ceEEEecCCCCCChh------hHHhhccccCCCC------------CCcEEEEEcCCch-------hhhccCCCceEeCC
Q 048135 218 KFLIVLDNVWSKNYG------LWKTLKSPFMAGT------------PGSKIIVTTRSVD-------VALTLGPIDYYNLE 272 (1189)
Q Consensus 218 ~~LlvlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~iivTtr~~~-------v~~~~~~~~~~~l~ 272 (1189)
+.++.+||+.-...+ ..+.++..+..++ .+..+|.+|-... -.....-..++.+.
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~ 1416 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLG 1416 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECC
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeC
Q ss_pred CCChhhHHHHHHHhhccCCCcccchhHHHHHHHHHHHh
Q 048135 273 LLSDDDCWSIFEKHAFENRDASAHQNLELIHAKVVEKC 310 (1189)
Q Consensus 273 ~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c 310 (1189)
..+.++-.++|.....+.-. ..+++..++..+++..
T Consensus 1417 ~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp CCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHH
No 496
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=74.99 E-value=1.2 Score=42.60 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=18.6
Q ss_pred CeEEccCCCcHHHHHHHHhcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.|+|.+|+|||||...+.++.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999887643
No 497
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=74.98 E-value=1.2 Score=43.53 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.9
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||...+...
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999998865
No 498
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=74.98 E-value=1.2 Score=42.63 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=18.9
Q ss_pred CeEEccCCCcHHHHHHHHhcCc
Q 048135 142 PTLVGMGGIGKTTLARLVYNDK 163 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~~ 163 (1189)
+.|+|.+|+|||||...+.++.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4699999999999999987653
No 499
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=74.98 E-value=1.2 Score=42.75 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.4
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||...+...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 459999999999999988754
No 500
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=74.93 E-value=1.2 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=18.0
Q ss_pred CeEEccCCCcHHHHHHHHhcC
Q 048135 142 PTLVGMGGIGKTTLARLVYND 162 (1189)
Q Consensus 142 ~~I~G~gG~GKTtla~~v~~~ 162 (1189)
+.|+|.+|+|||||+..+.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999877654
Done!