BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048136
(559 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 112/447 (25%), Positives = 177/447 (39%), Gaps = 56/447 (12%)
Query: 120 DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179
D +C +D NG ++ TGG L+ + W P ++ R Y + A ++D
Sbjct: 247 DMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSD 302
Query: 180 GSFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLEN-NLYPFVYLVPDGNLYIF 238
G GG SFS E+ YS + T+ L N + P L D
Sbjct: 303 GRVFTIGG--SFSGGVF--EKNGEVYSPSSK----TWTSLPNAKVNPM--LTADKQGLYK 352
Query: 239 ANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGS 298
++N + L + V + P A N+ TS S + R V + + CG +
Sbjct: 353 SDNHAWLFGWKKGSVFQAGPST---AMNWYYTSGSGDVKSAGKRQSNRGVAPDAM-CGNA 408
Query: 299 V------PEAFYFGEVEKRLVPALDDCARMVV-----TSPDPVWTTEKMPTPRVMSDGVL 347
V + FG A ++ TSP+ V+ + + R V+
Sbjct: 409 VMYDAVKGKILTFGGSPDYTDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 468
Query: 348 LPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANL 407
LP G + G G ++D+ P F P +Y P + F + P+ I R YHS++ L
Sbjct: 469 LPDGSTFITGGQRRGII-FEDS-TPVFTPEIYVPEQ---DTFYKQNPNSIVRAYHSISLL 523
Query: 408 LPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELAD--RRPMILVDETEKAAP 465
LPDGRVF GG G + F+P YL + RP I T+
Sbjct: 524 LPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYDSNGNLATRPKITRTSTQSVKV 578
Query: 466 YGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVV 525
G+ I + + +++ L+ A TH+++ +QR I L + + Y
Sbjct: 579 GGR---ITISTDSSISKASLIRYGTA----THTVNTDQRRIPLTLTNNGGNSYS------ 625
Query: 526 VAMPPSGNIAPPGYYMLSVV-LKGIPS 551
+P +A PGY+ML V+ G+PS
Sbjct: 626 FQVPSDSGVALPGYWMLFVMNSAGVPS 652
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 112/447 (25%), Positives = 178/447 (39%), Gaps = 56/447 (12%)
Query: 120 DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179
D +C +D NG ++ TGG L+ + W P ++ R Y + A ++D
Sbjct: 225 DMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSD 280
Query: 180 GSFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLEN-NLYPFVYLVPDGNLYIF 238
G GG SFS E+ YS + T+ L N + P L D
Sbjct: 281 GRVFTIGG--SFSGGVF--EKNGEVYSPSSK----TWTSLPNAKVNPM--LTADKQGLYR 330
Query: 239 ANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGS 298
++N + L + V + P A N+ TS S + R V + + CG +
Sbjct: 331 SDNHAWLFGWKKGSVFQAGPST---AMNWYYTSGSGDVKSAGKRQSNRGVAPDAM-CGNA 386
Query: 299 V------PEAFYFGEVEKRLVPALDDCARMVV-----TSPDPVWTTEKMPTPRVMSDGVL 347
V + FG A ++ TSP+ V+ + + R V+
Sbjct: 387 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 446
Query: 348 LPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANL 407
LP G + G G ++D+ P F P +Y P + F + P+ I R+YHS++ L
Sbjct: 447 LPDGSTFITGGQRRGIP-FEDS-TPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSISLL 501
Query: 408 LPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELAD--RRPMILVDETEKAAP 465
LPDGRVF GG G + F+P YL + RP I T+
Sbjct: 502 LPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKV 556
Query: 466 YGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVV 525
G+ I + + +++ L+ A TH+++ +QR I L + + Y
Sbjct: 557 GGR---ITISTDSSISKASLIRYGTA----THTVNTDQRRIPLTLTNNGGNSYS------ 603
Query: 526 VAMPPSGNIAPPGYYMLSVV-LKGIPS 551
+P +A PGY+ML V+ G+PS
Sbjct: 604 FQVPSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 176/452 (38%), Gaps = 66/452 (14%)
Query: 120 DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179
D +C +D NG ++ TGG L+ + W P ++ R Y + A ++D
Sbjct: 225 DMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSD 280
Query: 180 GSFLIFGGRDSFS-YE-----YIPAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDG 233
G GG S +E Y P+ +T S+P + + LY D
Sbjct: 281 GRVFTIGGSHSGGVFEKNGEVYSPSSKTWT--SLPNAKVNPMLTADKQGLY-----RSDN 333
Query: 234 NLYIFANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVL 293
+ ++F + + + + Y Y S S V K + DA
Sbjct: 334 HAWLFGWKKGSVFQAGPSTAMNWY---------YTSGSGDVKSAGKRQSNRGVAPDA--- 381
Query: 294 ICGGSV------PEAFYFGEVEKRLVPALDDCARMVV-----TSPDPVWTTEKMPTPRVM 342
+CG +V + FG A ++ TSP+ V+ + + R
Sbjct: 382 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF 441
Query: 343 SDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYH 402
V+LP G + G G ++D+ P F P +Y P + F + P+ I R+YH
Sbjct: 442 HTSVVLPDGSTFITGGQRRGIP-FEDS-TPVFTPEIYVPEQ---DTFYKQNPNSIVRVYH 496
Query: 403 SVANLLPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELAD--RRPMILVDET 460
S++ LLPDGRVF GG G + F+P YL + RP I T
Sbjct: 497 SISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTST 551
Query: 461 EKAAPYGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPG 520
+ G+ I + + +++ L+ A TH+++ +QR I L + + Y
Sbjct: 552 QSVKVGGR---ITISTDSSISKASLIRYGTA----THTVNTDQRRIPLTLTNNGGNSYS- 603
Query: 521 VHEVVVAMPPSGNIAPPGYYMLSVV-LKGIPS 551
+P +A PGY+ML V+ G+PS
Sbjct: 604 -----FQVPSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 176/452 (38%), Gaps = 66/452 (14%)
Query: 120 DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179
D +C +D NG ++ TGG L+ + W P ++ R Y + A ++D
Sbjct: 225 DMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSD 280
Query: 180 GSFLIFGGRDSFS-YE-----YIPAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDG 233
G GG S +E Y P+ +T S+P + + LY D
Sbjct: 281 GRVFTIGGSGSGGVFEKNGEVYSPSSKTWT--SLPNAKVNPMLTADKQGLY-----RSDN 333
Query: 234 NLYIFANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVL 293
+ ++F + + + + Y Y S S V K + DA
Sbjct: 334 HAWLFGWKKGSVFQAGPSTAMNWY---------YTSGSGDVKSAGKRQSNRGVAPDA--- 381
Query: 294 ICGGSV------PEAFYFGEVEKRLVPALDDCARMVV-----TSPDPVWTTEKMPTPRVM 342
+CG +V + FG A ++ TSP+ V+ + + R
Sbjct: 382 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF 441
Query: 343 SDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYH 402
V+LP G + G G ++D+ P F P +Y P + F + P+ I R+YH
Sbjct: 442 HTSVVLPDGSTFITGGQRRGIP-FEDS-TPVFTPEIYVPEQ---DTFYKQNPNSIVRVYH 496
Query: 403 SVANLLPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELAD--RRPMILVDET 460
S++ LLPDGRVF GG G + F+P YL + RP I T
Sbjct: 497 SISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTST 551
Query: 461 EKAAPYGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPG 520
+ G+ I + + +++ L+ A TH+++ +QR I L + + Y
Sbjct: 552 QSVKVGGR---ITISTDSSISKASLIRYGTA----THTVNTDQRRIPLTLTNNGGNSYS- 603
Query: 521 VHEVVVAMPPSGNIAPPGYYMLSVV-LKGIPS 551
+P +A PGY+ML V+ G+PS
Sbjct: 604 -----FQVPSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 177/447 (39%), Gaps = 56/447 (12%)
Query: 120 DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179
D +C +D NG ++ TGG L+ + W P ++ R Y + A ++D
Sbjct: 225 DMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSD 280
Query: 180 GSFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLEN-NLYPFVYLVPDGNLYIF 238
G GG S+ E+ YS + T+ L N + P L D
Sbjct: 281 GRVFTIGG----SWSGGVFEKNGEVYSPSSK----TWTSLPNAKVNPM--LTADKQGLYR 330
Query: 239 ANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGS 298
++N + L + V + P A N+ TS S + R V + + CG +
Sbjct: 331 SDNHAWLFGWKKGSVFQAGPST---AMNWYYTSGSGDVKSAGKRQSNRGVAPDAM-CGNA 386
Query: 299 V------PEAFYFGEVEKRLVPALDDCARMVV-----TSPDPVWTTEKMPTPRVMSDGVL 347
V + FG A ++ TSP+ V+ + + R V+
Sbjct: 387 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 446
Query: 348 LPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANL 407
LP G + G G ++D+ P F P +Y P + F + P+ I R+YHS++ L
Sbjct: 447 LPDGSTFITGGQRRGIP-FEDS-TPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSISLL 501
Query: 408 LPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELAD--RRPMILVDETEKAAP 465
LPDGRVF GG G + F+P YL + RP I T+
Sbjct: 502 LPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKV 556
Query: 466 YGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVV 525
G+ I + + +++ L+ A TH+++ +QR I L + + Y
Sbjct: 557 GGR---ITISTDSSISKASLIRYGTA----THTVNTDQRRIPLTLTNNGGNSYS------ 603
Query: 526 VAMPPSGNIAPPGYYMLSVV-LKGIPS 551
+P +A PGY+ML V+ G+PS
Sbjct: 604 FQVPSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 111/451 (24%), Positives = 177/451 (39%), Gaps = 64/451 (14%)
Query: 120 DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179
D +C +D NG ++ TGG L+ + W P ++ R Y + A ++D
Sbjct: 225 DMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSD 280
Query: 180 GSFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLEN-NLYPFVYLVPDGNLYIF 238
G GG S+ E+ YS + T+ L N + P L D
Sbjct: 281 GRVFTIGG----SWSGGVFEKNGEVYSPSSK----TWTSLPNAKVNPM--LTADKQGLYR 330
Query: 239 ANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRD--------------- 283
++N + L + V + P A N+ TS S + R
Sbjct: 331 SDNHAWLFGWKKGSVFQAGPST---AMNWYYTSGSGDVKSAGKRQSNRGVAPDAMSGNAV 387
Query: 284 YYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTEKMPTPRVMS 343
Y V ++L GGS P+ + L + TSP+ V+ + + R
Sbjct: 388 MYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFH 442
Query: 344 DGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHS 403
V+LP G + G G ++D+ P F P +Y P + F + P+ I R+YHS
Sbjct: 443 TSVVLPDGSTFITGGQRRGIP-FEDS-TPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHS 497
Query: 404 VANLLPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELAD--RRPMILVDETE 461
++ LLPDGRVF GG G + F+P YL + RP I T+
Sbjct: 498 ISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQ 552
Query: 462 KAAPYGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGV 521
G+ I + + +++ L+ A TH+++ +QR I L + + Y
Sbjct: 553 SVKVGGR---ITISTDSSISKASLIRYGTA----THTVNTDQRRIPLTLTNNGGNSYS-- 603
Query: 522 HEVVVAMPPSGNIAPPGYYMLSVV-LKGIPS 551
+P +A PGY+ML V+ G+PS
Sbjct: 604 ----FQVPSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 174/439 (39%), Gaps = 56/439 (12%)
Query: 128 LDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGG 187
+D NG ++ TGG L+ + W P ++ R Y + A ++DG GG
Sbjct: 250 MDGNGQIVVTGG---NDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSDGRVFTIGG 305
Query: 188 RDSFSYEYIPAERTENAYSIPFQFLRDTYDVLEN-NLYPFVYLVPDGNLYIFANNRSILL 246
S+ E+ YS + T+ L N + P L D ++N + L
Sbjct: 306 ----SWSGGVFEKNGEVYSPSSK----TWTSLPNAKVNPM--LTADKQGLYRSDNHAWLF 355
Query: 247 DPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSV------P 300
+ V + P A N+ TS S + R V + + CG +V
Sbjct: 356 GWKKGSVFQAGPST---AMNWYYTSGSGDVKSAGKRQSNRGVAPDAM-CGNAVMYDAVKG 411
Query: 301 EAFYFGEVEKRLVPALDDCARMVV-----TSPDPVWTTEKMPTPRVMSDGVLLPTGDVLL 355
+ FG A ++ TSP+ V+ + + R V+LP G +
Sbjct: 412 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFI 471
Query: 356 INGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFV 415
G G ++D+ P F P +Y P + F + P+ I R+YHS++ LLPDGRVF
Sbjct: 472 TGGQRRGIP-FEDS-TPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSISLLLPDGRVFN 526
Query: 416 GGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELAD--RRPMILVDETEKAAPYGKWVGIK 473
GG G + F+P YL + RP I T+ G+ I
Sbjct: 527 GG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKVGGR---IT 578
Query: 474 VKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVVVAMPPSGN 533
+ + +++ L+ A TH+++ +QR I L + + Y +P
Sbjct: 579 ISTDSSISKASLIRYGTA----THTVNTDQRRIPLTLTNNGGNSYS------FQVPSDSG 628
Query: 534 IAPPGYYMLSVV-LKGIPS 551
+A PGY+ML V+ G+PS
Sbjct: 629 VALPGYWMLFVMNSAGVPS 647
>pdb|2AHV|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHW|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
Length = 531
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 96 IDCWCHSVFYNVNTLQVTPLKVI-TDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCP 154
+D FY+ L V L D + G NG ++ TGGF+ S T++ + C
Sbjct: 357 LDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCG 416
Query: 155 TCDWTEYPTALKDGRWYATQ 174
T T + DG+ Q
Sbjct: 417 TLTAGSLKTEIADGKLNIVQ 436
>pdb|3GQ2|A Chain A, Crystal Structure Of The Dimer Of The P115 Tether Globular
Head Domain
pdb|3GQ2|B Chain B, Crystal Structure Of The Dimer Of The P115 Tether Globular
Head Domain
pdb|3GRL|A Chain A, Crystal Structure Of The Monomer Of The P115 Tether
Globular Head Domain
Length = 651
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 373 CFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDNDGYQEWA 428
CF+ LYK K G + L PS I + N + G++ GG D W
Sbjct: 388 CFQCFLYKNQKGQGEIVSTLLPSTID----ATGNTVSAGQLLCGGLFSTDSLSNWC 439
>pdb|2W3C|A Chain A, Globular Head Region Of The Human General Vesicular
Transport Factor P115
Length = 577
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 373 CFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDNDGYQEWA 428
CF+ LYK K G + L PS I +SV+ G++ GG D W
Sbjct: 336 CFQCFLYKNQKGQGEIVSTLLPSTIDATGNSVS----AGQLLCGGLFSTDSLSNWC 387
>pdb|2V6K|A Chain A, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
pdb|2V6K|B Chain B, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
Length = 214
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 310 KRLVPALDDCARMVVTSPDPV-WTTEKMPTPRVM 342
++LVPALD A++++ SP + W E+ PTP ++
Sbjct: 51 QQLVPALDTGAQVLIQSPAIIEWLEEQYPTPALL 84
>pdb|2JL4|A Chain A, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
pdb|2JL4|B Chain B, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
Length = 213
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 310 KRLVPALDDCARMVVTSPDPV-WTTEKMPTPRVM 342
++LVPALD A++++ SP + W E+ PTP ++
Sbjct: 50 QQLVPALDTGAQVLIQSPAIIEWLEEQYPTPALL 83
>pdb|1VKZ|A Chain A, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
pdb|1VKZ|B Chain B, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
Length = 412
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 426 EWAKFPTELR--LEKFSPPYL--APELADRRPMILVDETEKAAPYG 467
E A+ P ELR ++KFSPPY+ A LA + ++++D E+ G
Sbjct: 125 EVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKG 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,555,444
Number of Sequences: 62578
Number of extensions: 842581
Number of successful extensions: 1589
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 32
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)