BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048136
(559 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1
Length = 680
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 177/447 (39%), Gaps = 56/447 (12%)
Query: 120 DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179
D +C +D NG ++ TGG L+ + W P ++ R Y + A ++D
Sbjct: 266 DMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSD 321
Query: 180 GSFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLEN-NLYPFVYLVPDGNLYIF 238
G GG S+ E+ YS + T+ L N + P L D
Sbjct: 322 GRVFTIGG----SWSGGVFEKNGEVYSPSSK----TWTSLPNAKVNPM--LTADKQGLYR 371
Query: 239 ANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGS 298
++N + L + V + P A N+ TS S + R V + + CG +
Sbjct: 372 SDNHAWLFGWKKGSVFQAGPST---AMNWYYTSGSGDVKSAGKRQSNRGVAPDAM-CGNA 427
Query: 299 V------PEAFYFGEVEKRLVPALDDCARMVV-----TSPDPVWTTEKMPTPRVMSDGVL 347
V + FG A ++ TSP+ V+ + + R V+
Sbjct: 428 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 487
Query: 348 LPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANL 407
LP G + G G ++D+ P F P +Y P + F + P+ I R+YHS++ L
Sbjct: 488 LPDGSTFITGGQRRGIP-FEDS-TPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSISLL 542
Query: 408 LPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELAD--RRPMILVDETEKAAP 465
LPDGRVF GG G + F+P YL + RP I T+
Sbjct: 543 LPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKV 597
Query: 466 YGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVV 525
G+ I + + +++ L+ A TH+++ +QR I L + + Y
Sbjct: 598 GGR---ITISTDSSISKASLIRYGTA----THTVNTDQRRIPLTLTNNGGNSYS------ 644
Query: 526 VAMPPSGNIAPPGYYMLSVV-LKGIPS 551
+P +A PGY+ML V+ G+PS
Sbjct: 645 FQVPSDSGVALPGYWMLFVMNSAGVPS 671
>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1
Length = 680
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 176/447 (39%), Gaps = 56/447 (12%)
Query: 120 DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179
D +C +D NG ++ TGG L+ + W P ++ R Y + A ++D
Sbjct: 266 DMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSD 321
Query: 180 GSFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLEN-NLYPFVYLVPDGNLYIF 238
G GG S+ E+ YS + T+ L N + P L D
Sbjct: 322 GRVFTIGG----SWSGGVFEKNGEVYSPSSK----TWTSLPNAKVNPM--LTADKQGLYR 371
Query: 239 ANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGS 298
++N + L + V + P A N+ TS S + R V + + CG +
Sbjct: 372 SDNHAWLFGWKKGSVFQAGPST---AMNWYYTSGSGDVKSAGKRQSNRGVAPDAM-CGNA 427
Query: 299 V------PEAFYFGEVEKRLVPALDDCARMVV-----TSPDPVWTTEKMPTPRVMSDGVL 347
V + FG A ++ TSP+ V+ + + R V+
Sbjct: 428 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 487
Query: 348 LPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANL 407
LP G + G G ++D+ P F P +Y P + F + P+ I R+YHS++ L
Sbjct: 488 LPDGSTFITGGQRRGIP-FEDS-TPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSISLL 542
Query: 408 LPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELAD--RRPMILVDETEKAAP 465
LPDGRVF GG G + F+P YL + RP I T+
Sbjct: 543 LPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKV 597
Query: 466 YGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVV 525
G+ I + + + + L+ A TH+++ +QR I L + + Y
Sbjct: 598 GGR---ITISTDSSITKASLIRYGTA----THTVNTDQRRIPLTLTNNGGNSYS------ 644
Query: 526 VAMPPSGNIAPPGYYMLSVV-LKGIPS 551
+P +A PGY+ML V+ G+PS
Sbjct: 645 FQVPSDSGVALPGYWMLFVMNSAGVPS 671
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3
PE=1 SV=1
Length = 1050
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 28/118 (23%)
Query: 197 PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDG-NLYIFANNRSILLDPRANYVLR 255
P E E + + F R++Y V+E L+P G N+ + +NR +D NYV +
Sbjct: 845 PGEDVEETFCLNFTICRESYGVIEQK-----KLIPGGDNVTVCKDNRQEFVDAYVNYVFQ 899
Query: 256 EYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLV 313
+ ++ Y A + +CGG V E F E+ +V
Sbjct: 900 ----------------------ISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMV 935
>sp|P18860|CXA5_CHICK Gap junction alpha-5 protein OS=Gallus gallus GN=GJA5 PE=2 SV=2
Length = 369
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 354 LLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPS-DIPRMY-------HSVA 405
L ++ AEL GWK A + C + YKPS R E AP + +MY +A
Sbjct: 224 LFLSLAELYHLGWKKAKERCSRA--YKPSPSTAPRRLESAPQVERAQMYTPPPDFNQCLA 281
Query: 406 NLLPDGRVFVGGSNDNDGYQEWAKFPTE 433
+ P+G+ SN Q A F TE
Sbjct: 282 S--PNGKFISPFSNKMASQQNTANFATE 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,396,604
Number of Sequences: 539616
Number of extensions: 10688600
Number of successful extensions: 19206
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 19195
Number of HSP's gapped (non-prelim): 13
length of query: 559
length of database: 191,569,459
effective HSP length: 123
effective length of query: 436
effective length of database: 125,196,691
effective search space: 54585757276
effective search space used: 54585757276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)