Query 048136
Match_columns 559
No_of_seqs 360 out of 1847
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07250 Glyoxal_oxid_N: Glyox 100.0 8.5E-45 1.8E-49 354.7 24.4 237 50-297 1-243 (243)
2 KOG4441 Proteins containing BT 100.0 4.8E-38 1E-42 346.2 28.2 269 57-407 283-568 (571)
3 KOG4441 Proteins containing BT 100.0 3.1E-35 6.7E-40 324.0 25.4 251 130-446 283-550 (571)
4 PHA02713 hypothetical protein; 100.0 1E-33 2.2E-38 312.8 23.1 236 102-395 274-543 (557)
5 cd02851 Galactose_oxidase_C_te 100.0 5.1E-34 1.1E-38 240.8 12.0 98 448-559 2-101 (101)
6 PHA02713 hypothetical protein; 100.0 5.8E-32 1.3E-36 298.8 24.9 257 133-446 259-537 (557)
7 PF09118 DUF1929: Domain of un 100.0 2.7E-33 5.9E-38 236.8 8.7 97 452-558 1-98 (98)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 4.4E-30 9.5E-35 268.9 28.5 251 125-422 11-333 (346)
9 PRK14131 N-acetylneuraminic ac 100.0 7.7E-29 1.7E-33 262.3 27.7 279 112-442 19-368 (376)
10 PHA02790 Kelch-like protein; P 100.0 2.8E-28 6.1E-33 265.6 24.5 217 105-392 251-477 (480)
11 PLN02153 epithiospecifier prot 100.0 2.1E-27 4.5E-32 248.3 28.9 282 108-422 5-326 (341)
12 PRK14131 N-acetylneuraminic ac 100.0 5.7E-27 1.2E-31 248.0 27.0 286 37-391 18-374 (376)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 6.9E-27 1.5E-31 244.8 27.3 255 48-360 8-331 (346)
14 TIGR03548 mutarot_permut cycli 100.0 6.6E-27 1.4E-31 242.6 24.9 251 126-422 8-315 (323)
15 PHA03098 kelch-like protein; P 100.0 9.1E-27 2E-31 257.7 26.1 243 102-399 266-525 (534)
16 PLN02153 epithiospecifier prot 100.0 3.2E-26 7E-31 239.3 28.8 288 33-382 4-339 (341)
17 PHA02790 Kelch-like protein; P 99.9 9.2E-27 2E-31 253.7 22.9 204 57-333 270-476 (480)
18 PLN02193 nitrile-specifier pro 99.9 2.9E-25 6.2E-30 241.4 33.3 276 103-421 140-454 (470)
19 TIGR03548 mutarot_permut cycli 99.9 2.7E-25 5.9E-30 230.6 27.0 267 46-360 3-313 (323)
20 PHA03098 kelch-like protein; P 99.9 8.3E-25 1.8E-29 242.1 26.1 249 133-445 252-514 (534)
21 PLN02193 nitrile-specifier pro 99.9 1.1E-23 2.4E-28 229.0 29.4 287 35-383 150-469 (470)
22 KOG4693 Uncharacterized conser 99.7 7.4E-17 1.6E-21 154.8 19.2 264 37-360 3-312 (392)
23 KOG4693 Uncharacterized conser 99.7 6.2E-16 1.4E-20 148.4 21.6 254 122-420 14-312 (392)
24 KOG0379 Kelch repeat-containin 99.6 3.6E-13 7.8E-18 146.8 22.7 260 45-413 58-333 (482)
25 KOG0379 Kelch repeat-containin 99.4 1.1E-11 2.4E-16 135.2 21.2 211 165-422 57-287 (482)
26 KOG1230 Protein containing rep 99.3 3.7E-11 8E-16 122.1 17.3 219 131-419 78-316 (521)
27 COG3055 Uncharacterized protei 99.3 2.4E-10 5.2E-15 114.9 18.7 259 109-423 69-362 (381)
28 KOG4152 Host cell transcriptio 99.2 6E-10 1.3E-14 115.7 17.4 278 110-421 17-343 (830)
29 KOG4152 Host cell transcriptio 99.1 2.2E-09 4.8E-14 111.6 17.1 276 31-360 12-342 (830)
30 KOG1230 Protein containing rep 99.1 1.1E-09 2.3E-14 111.7 13.1 197 33-254 105-345 (521)
31 PF07250 Glyoxal_oxid_N: Glyox 99.0 9E-09 1.9E-13 101.4 14.4 135 242-419 47-189 (243)
32 COG3055 Uncharacterized protei 99.0 4E-08 8.7E-13 99.1 18.0 241 36-362 70-361 (381)
33 PF13964 Kelch_6: Kelch motif 98.7 2.3E-08 5E-13 74.0 6.3 50 339-399 1-50 (50)
34 PF13964 Kelch_6: Kelch motif 98.5 2.2E-07 4.8E-12 68.7 4.7 46 122-169 2-50 (50)
35 smart00612 Kelch Kelch domain. 98.4 3.9E-07 8.5E-12 65.8 5.1 45 352-407 1-45 (47)
36 PF01344 Kelch_1: Kelch motif; 98.3 4.8E-07 1E-11 65.8 3.4 47 339-396 1-47 (47)
37 smart00612 Kelch Kelch domain. 98.2 3.2E-06 7E-11 60.9 5.1 45 133-180 1-47 (47)
38 PF13418 Kelch_4: Galactose ox 98.0 4.5E-06 9.7E-11 61.3 3.6 48 339-396 1-48 (49)
39 PF13415 Kelch_3: Galactose ox 98.0 1.3E-05 2.8E-10 58.9 5.7 48 350-406 1-48 (49)
40 PF07646 Kelch_2: Kelch motif; 98.0 1.5E-05 3.3E-10 58.6 6.0 49 339-396 1-49 (49)
41 PF01344 Kelch_1: Kelch motif; 97.9 6.4E-06 1.4E-10 59.8 1.6 43 122-166 2-47 (47)
42 PF13415 Kelch_3: Galactose ox 97.8 5.1E-05 1.1E-09 55.8 5.2 44 131-176 1-48 (49)
43 PF13418 Kelch_4: Galactose ox 97.5 0.00017 3.8E-09 52.8 5.1 38 223-261 3-48 (49)
44 PF07646 Kelch_2: Kelch motif; 97.4 0.00021 4.6E-09 52.4 4.4 41 122-163 2-47 (49)
45 KOG0286 G-protein beta subunit 97.3 0.22 4.8E-06 49.8 24.7 222 127-419 104-335 (343)
46 PLN02772 guanylate kinase 97.2 0.001 2.3E-08 69.9 8.1 70 339-420 24-96 (398)
47 PRK11138 outer membrane biogen 97.0 0.64 1.4E-05 49.6 29.6 248 102-418 81-343 (394)
48 PRK11138 outer membrane biogen 97.0 0.33 7.2E-06 51.7 25.4 239 101-417 131-383 (394)
49 PLN02772 guanylate kinase 96.8 0.0044 9.6E-08 65.3 8.4 68 121-189 24-96 (398)
50 COG4257 Vgb Streptogramin lyas 96.8 0.6 1.3E-05 46.6 22.2 220 102-392 85-312 (353)
51 PF10282 Lactonase: Lactonase, 95.8 2.2 4.7E-05 44.7 22.2 263 102-419 17-311 (345)
52 TIGR03300 assembly_YfgL outer 95.5 4 8.8E-05 43.0 25.3 246 101-419 116-370 (377)
53 KOG0310 Conserved WD40 repeat- 95.4 0.92 2E-05 48.3 17.0 203 97-360 87-300 (487)
54 TIGR03866 PQQ_ABC_repeats PQQ- 95.2 3.6 7.8E-05 40.8 28.2 133 102-254 13-150 (300)
55 cd00200 WD40 WD40 domain, foun 95.2 3.1 6.6E-05 39.9 26.9 132 102-252 33-168 (289)
56 PRK13684 Ycf48-like protein; P 95.0 5.3 0.00012 41.7 31.2 74 328-419 245-322 (334)
57 PF13854 Kelch_5: Kelch motif 95.0 0.055 1.2E-06 38.2 4.8 41 336-383 1-41 (42)
58 KOG0310 Conserved WD40 repeat- 95.0 1.4 3E-05 47.0 16.9 128 102-250 135-269 (487)
59 KOG0315 G-protein beta subunit 94.9 4.2 9.2E-05 40.1 19.1 225 98-384 59-290 (311)
60 TIGR01640 F_box_assoc_1 F-box 94.8 0.7 1.5E-05 45.2 13.9 143 101-251 71-230 (230)
61 KOG0315 G-protein beta subunit 94.2 6.4 0.00014 38.9 21.3 248 102-421 22-280 (311)
62 PRK11028 6-phosphogluconolacto 93.6 9.8 0.00021 39.1 28.0 90 102-196 59-153 (330)
63 TIGR03866 PQQ_ABC_repeats PQQ- 93.6 8.2 0.00018 38.2 26.0 131 102-254 55-192 (300)
64 COG4257 Vgb Streptogramin lyas 92.6 13 0.00027 37.6 19.6 134 102-262 126-273 (353)
65 TIGR03300 assembly_YfgL outer 92.6 15 0.00033 38.5 29.5 218 102-391 77-305 (377)
66 PRK11028 6-phosphogluconolacto 92.5 14 0.00031 37.9 26.3 138 102-251 14-158 (330)
67 PF13854 Kelch_5: Kelch motif 92.4 0.13 2.8E-06 36.3 2.8 25 165-190 1-25 (42)
68 PLN00181 protein SPA1-RELATED; 92.0 16 0.00035 42.8 21.1 231 126-421 489-730 (793)
69 KOG2437 Muskelin [Signal trans 91.9 0.22 4.7E-06 53.2 4.9 126 122-254 261-417 (723)
70 TIGR01640 F_box_assoc_1 F-box 91.9 5.6 0.00012 38.8 14.8 153 232-418 5-161 (230)
71 KOG0271 Notchless-like WD40 re 90.1 19 0.0004 37.8 16.5 115 127-255 122-241 (480)
72 COG1520 FOG: WD40-like repeat 88.7 35 0.00075 35.9 20.5 261 102-419 80-354 (370)
73 PF08450 SGL: SMP-30/Gluconola 88.4 5.9 0.00013 39.0 11.7 156 231-442 50-213 (246)
74 cd00200 WD40 WD40 domain, foun 88.2 24 0.00052 33.5 23.5 217 128-418 17-238 (289)
75 KOG2437 Muskelin [Signal trans 87.7 0.66 1.4E-05 49.8 4.4 126 34-189 237-395 (723)
76 KOG0278 Serine/threonine kinas 86.7 14 0.00031 36.6 12.5 135 126-299 106-245 (334)
77 PF08450 SGL: SMP-30/Gluconola 86.3 13 0.00029 36.4 12.9 139 103-251 63-215 (246)
78 PF07893 DUF1668: Protein of u 85.3 16 0.00034 38.3 13.3 120 129-255 74-213 (342)
79 PF14870 PSII_BNR: Photosynthe 85.1 31 0.00067 35.5 15.0 160 35-243 133-297 (302)
80 PF13360 PQQ_2: PQQ-like domai 85.1 34 0.00073 32.9 15.0 139 229-420 33-183 (238)
81 KOG0286 G-protein beta subunit 84.7 49 0.0011 33.7 23.2 192 169-420 98-294 (343)
82 PF13360 PQQ_2: PQQ-like domai 84.2 41 0.00088 32.3 17.8 144 102-254 48-198 (238)
83 KOG0266 WD40 repeat-containing 83.8 71 0.0015 34.8 21.1 203 119-384 202-411 (456)
84 KOG0649 WD40 repeat protein [G 82.6 49 0.0011 32.8 14.1 123 102-248 138-273 (325)
85 PTZ00421 coronin; Provisional 81.6 61 0.0013 35.8 16.6 52 102-157 150-201 (493)
86 KOG0296 Angio-associated migra 78.6 78 0.0017 33.1 14.7 131 102-254 88-225 (399)
87 PF14870 PSII_BNR: Photosynthe 78.1 88 0.0019 32.2 19.3 241 109-420 5-253 (302)
88 PTZ00420 coronin; Provisional 75.1 77 0.0017 35.7 15.0 134 102-252 150-296 (568)
89 KOG0266 WD40 repeat-containing 73.9 1.4E+02 0.003 32.5 24.5 233 127-444 166-411 (456)
90 PF07893 DUF1668: Protein of u 73.2 1.2E+02 0.0026 31.8 15.2 145 231-417 75-237 (342)
91 PF12768 Rax2: Cortical protei 72.3 38 0.00082 34.5 10.8 103 31-163 21-130 (281)
92 KOG0291 WD40-repeat-containing 71.5 2E+02 0.0043 33.2 25.9 50 101-153 331-380 (893)
93 PRK13684 Ycf48-like protein; P 70.8 1.4E+02 0.003 31.1 25.3 75 329-419 204-279 (334)
94 KOG0272 U4/U6 small nuclear ri 70.3 1.3E+02 0.0029 32.1 14.1 199 102-360 243-451 (459)
95 PTZ00421 coronin; Provisional 69.9 1.8E+02 0.0039 32.1 21.3 107 131-254 87-203 (493)
96 KOG0278 Serine/threonine kinas 69.4 1.3E+02 0.0028 30.1 13.2 68 335-421 222-289 (334)
97 KOG0289 mRNA splicing factor [ 68.3 97 0.0021 33.2 12.7 144 223-419 349-496 (506)
98 KOG0303 Actin-binding protein 67.4 88 0.0019 33.2 12.1 90 99-196 153-246 (472)
99 KOG0271 Notchless-like WD40 re 66.3 11 0.00025 39.3 5.5 54 348-421 124-179 (480)
100 PLN02919 haloacid dehalogenase 64.2 2.2E+02 0.0048 34.7 16.8 60 345-420 809-879 (1057)
101 COG5184 ATS1 Alpha-tubulin sup 63.0 2.3E+02 0.005 30.8 19.2 82 104-188 90-203 (476)
102 PF07433 DUF1513: Protein of u 62.9 1.6E+02 0.0034 30.5 12.9 102 227-358 10-118 (305)
103 PF12768 Rax2: Cortical protei 60.3 35 0.00076 34.8 7.8 64 97-163 14-81 (281)
104 KOG0285 Pleiotropic regulator 58.8 1.7E+02 0.0036 30.8 12.1 183 169-420 152-340 (460)
105 KOG0279 G protein beta subunit 57.7 2.2E+02 0.0048 28.9 12.9 136 102-252 87-225 (315)
106 PRK04792 tolB translocation pr 57.4 2.1E+02 0.0046 31.0 13.9 91 101-196 287-377 (448)
107 PLN00181 protein SPA1-RELATED; 57.3 2.9E+02 0.0064 32.3 16.0 135 101-250 599-739 (793)
108 PTZ00420 coronin; Provisional 56.6 3.4E+02 0.0073 30.7 24.8 107 131-254 86-202 (568)
109 KOG1036 Mitotic spindle checkp 55.1 1.4E+02 0.003 30.6 10.8 83 102-196 77-160 (323)
110 PF13088 BNR_2: BNR repeat-lik 53.6 84 0.0018 31.1 9.4 124 108-237 143-275 (275)
111 KOG0263 Transcription initiati 53.2 84 0.0018 35.8 9.8 92 95-196 554-646 (707)
112 KOG0291 WD40-repeat-containing 52.4 4.3E+02 0.0093 30.6 20.7 101 128-249 400-508 (893)
113 PRK01742 tolB translocation pr 50.9 3.4E+02 0.0074 29.1 16.2 134 102-254 230-366 (429)
114 PF03089 RAG2: Recombination a 49.9 32 0.0007 34.8 5.4 82 335-421 83-175 (337)
115 TIGR03075 PQQ_enz_alc_DH PQQ-d 49.2 2.5E+02 0.0055 31.3 13.0 121 230-390 67-196 (527)
116 COG1520 FOG: WD40-like repeat 48.9 3.4E+02 0.0073 28.4 20.6 231 127-419 64-305 (370)
117 KOG2055 WD40 repeat protein [G 48.7 3.9E+02 0.0084 29.1 16.2 111 126-254 263-379 (514)
118 COG3490 Uncharacterized protei 47.5 92 0.002 31.8 8.1 89 337-443 110-203 (366)
119 KOG2055 WD40 repeat protein [G 47.1 3.5E+02 0.0075 29.4 12.6 134 100-251 280-419 (514)
120 PF15418 DUF4625: Domain of un 45.9 93 0.002 27.9 7.3 21 522-545 94-114 (132)
121 KOG0639 Transducin-like enhanc 45.3 1.7E+02 0.0036 32.1 10.0 140 233-421 432-573 (705)
122 TIGR02608 delta_60_rpt delta-6 44.9 20 0.00043 27.0 2.3 17 404-420 5-21 (55)
123 KOG0306 WD40-repeat-containing 44.8 5.6E+02 0.012 29.7 22.4 171 102-300 396-572 (888)
124 KOG0263 Transcription initiati 44.6 2.6E+02 0.0056 32.1 11.9 133 94-249 511-649 (707)
125 KOG0316 Conserved WD40 repeat- 44.3 1.3E+02 0.0028 29.9 8.3 89 101-196 82-170 (307)
126 PF03089 RAG2: Recombination a 44.0 65 0.0014 32.7 6.4 89 40-141 80-174 (337)
127 COG2706 3-carboxymuconate cycl 42.4 4E+02 0.0087 27.9 12.0 92 97-196 212-318 (346)
128 PF13540 RCC1_2: Regulator of 40.7 24 0.00053 22.7 2.0 21 400-421 8-28 (30)
129 PRK03629 tolB translocation pr 40.2 5E+02 0.011 27.9 18.6 140 102-258 225-371 (429)
130 TIGR02800 propeller_TolB tol-p 39.6 4.7E+02 0.01 27.4 18.0 138 101-254 215-359 (417)
131 PF08662 eIF2A: Eukaryotic tra 39.0 2E+02 0.0044 27.2 9.1 78 102-187 85-162 (194)
132 PF13088 BNR_2: BNR repeat-lik 38.9 55 0.0012 32.4 5.4 79 326-415 191-275 (275)
133 KOG0305 Anaphase promoting com 38.5 5.8E+02 0.013 28.2 21.7 78 102-190 199-280 (484)
134 PRK02888 nitrous-oxide reducta 38.0 6.6E+02 0.014 28.7 21.2 50 145-196 296-348 (635)
135 KOG0301 Phospholipase A2-activ 37.5 6.8E+02 0.015 28.7 15.0 26 167-196 141-166 (745)
136 PRK05137 tolB translocation pr 37.3 5.5E+02 0.012 27.5 14.0 81 102-187 272-352 (435)
137 PF07433 DUF1513: Protein of u 37.1 3.6E+02 0.0077 27.9 10.8 84 102-188 30-120 (305)
138 PF10670 DUF4198: Domain of un 37.1 2E+02 0.0043 27.3 8.8 68 461-546 144-211 (215)
139 PRK04792 tolB translocation pr 36.5 5.8E+02 0.013 27.6 17.3 136 102-254 244-387 (448)
140 cd02849 CGTase_C_term Cgtase ( 36.4 2.3E+02 0.005 22.9 9.5 76 452-555 2-78 (81)
141 PF00868 Transglut_N: Transglu 36.1 2.7E+02 0.0058 24.3 8.6 22 521-545 94-115 (118)
142 KOG0299 U3 snoRNP-associated p 34.4 4.2E+02 0.0092 28.7 10.9 140 50-246 206-351 (479)
143 KOG0279 G protein beta subunit 34.0 5.3E+02 0.011 26.3 14.3 75 375-458 173-251 (315)
144 PF10282 Lactonase: Lactonase, 33.8 3.6E+02 0.0077 28.0 10.7 92 102-196 218-319 (345)
145 KOG0649 WD40 repeat protein [G 33.8 5E+02 0.011 26.0 11.3 96 289-422 126-229 (325)
146 KOG0308 Conserved WD40 repeat- 33.8 7.6E+02 0.017 28.1 13.1 108 129-251 34-150 (735)
147 KOG0639 Transducin-like enhanc 33.8 1.3E+02 0.0028 33.0 7.0 83 319-419 442-529 (705)
148 KOG0300 WD40 repeat-containing 33.4 5.6E+02 0.012 26.6 11.1 138 102-261 296-436 (481)
149 KOG0272 U4/U6 small nuclear ri 32.3 6.7E+02 0.014 27.0 20.4 212 132-419 231-450 (459)
150 TIGR03075 PQQ_enz_alc_DH PQQ-d 31.4 2.2E+02 0.0047 31.8 9.0 95 288-417 68-172 (527)
151 PRK05137 tolB translocation pr 29.7 7.2E+02 0.016 26.6 18.0 80 102-186 228-307 (435)
152 TIGR02800 propeller_TolB tol-p 28.5 7E+02 0.015 26.1 14.6 90 102-196 260-349 (417)
153 TIGR03437 Soli_cterm Solibacte 28.3 1.2E+02 0.0027 29.5 5.6 38 519-559 178-215 (215)
154 PLN02919 haloacid dehalogenase 27.0 5.5E+02 0.012 31.4 11.9 65 127-196 810-885 (1057)
155 PRK02889 tolB translocation pr 25.9 8.3E+02 0.018 26.1 17.6 137 102-254 222-365 (427)
156 PLN00033 photosystem II stabil 25.8 8.4E+02 0.018 26.1 15.8 145 52-245 244-394 (398)
157 KOG0308 Conserved WD40 repeat- 25.6 4.6E+02 0.01 29.8 9.7 143 228-420 80-234 (735)
158 PRK03629 tolB translocation pr 25.6 8.5E+02 0.018 26.1 14.3 83 102-189 269-351 (429)
159 KOG0296 Angio-associated migra 25.5 2.6E+02 0.0055 29.5 7.4 50 103-156 173-222 (399)
160 COG3656 Predicted periplasmic 25.3 1.1E+02 0.0024 27.6 4.1 45 502-546 85-131 (172)
161 PF00400 WD40: WD domain, G-be 25.2 1.1E+02 0.0023 20.0 3.3 23 126-151 17-39 (39)
162 PF07172 GRP: Glycine rich pro 25.1 35 0.00075 28.8 1.0 12 1-14 1-12 (95)
163 PF08662 eIF2A: Eukaryotic tra 24.9 1.5E+02 0.0032 28.1 5.5 56 347-419 108-163 (194)
164 KOG0647 mRNA export protein (c 24.7 7.3E+02 0.016 25.6 10.2 49 98-153 92-145 (347)
165 KOG1445 Tumor-specific antigen 24.5 2.2E+02 0.0047 32.2 7.0 63 128-196 728-795 (1012)
166 KOG1517 Guanine nucleotide bin 24.3 6.9E+02 0.015 30.4 11.2 26 232-257 1177-1203(1387)
167 KOG1036 Mitotic spindle checkp 23.9 3.8E+02 0.0082 27.6 8.1 81 318-421 117-199 (323)
168 cd00216 PQQ_DH Dehydrogenases 23.6 9.9E+02 0.021 26.1 15.3 147 229-419 58-237 (488)
169 KOG0268 Sof1-like rRNA process 22.0 3.2E+02 0.0069 28.9 7.3 131 232-421 158-294 (433)
170 PRK04922 tolB translocation pr 21.6 1E+03 0.022 25.5 14.4 80 102-186 274-353 (433)
171 KOG2321 WD40 repeat protein [G 21.5 9.8E+02 0.021 27.0 11.1 154 375-550 156-336 (703)
172 KOG0316 Conserved WD40 repeat- 21.1 1.4E+02 0.003 29.7 4.3 86 94-189 119-204 (307)
173 KOG1427 Uncharacterized conser 20.6 2.2E+02 0.0047 29.3 5.7 95 397-512 117-215 (443)
174 PRK00178 tolB translocation pr 20.2 1E+03 0.023 25.1 14.6 82 102-188 269-350 (430)
No 1
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=100.00 E-value=8.5e-45 Score=354.69 Aligned_cols=237 Identities=45% Similarity=0.819 Sum_probs=209.7
Q ss_pred eEEEeecCCCeEEEEecccccccCCCCCCCCCCCCcc-ccccccccCCccceeeEEEeCCCCCEEeCccCCCcccccCee
Q 048136 50 MHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMH-QNKATNVTNIDCWCHSVFYNVNTLQVTPLKVITDTWCSSGGL 128 (559)
Q Consensus 50 ~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~ 128 (559)
||++|+ +++||+++++.+.|+|++.||+ |+||.+ .+. ..+.||++|+.+||+.|++++++...++.||+++++
T Consensus 1 mh~~~~-~~~~v~~~d~t~~g~s~~~~~~--~~c~~~~~~~---~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~ 74 (243)
T PF07250_consen 1 MHMALL-HNNKVIMFDRTNFGPSNISLPD--GRCRDNPEDN---ALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAF 74 (243)
T ss_pred CeEeEc-cCCEEEEEeCCCcccccccCCC--CccccCcccc---ccccCceEEEEEEecCCCcEEeccCCCCCcccCcCC
Confidence 799999 9999999999999999999999 999976 322 236799999999999999999999999999999999
Q ss_pred cCCCcEEEEcCCCCCCCeEEEEeCCC---CCCeecCCCccccccccceEEEccCCcEEEEcCCCCCceeEEcCCCCCCCc
Q 048136 129 DVNGNLISTGGFLGGSRTTRYLWGCP---TCDWTEYPTALKDGRWYATQALLADGSFLIFGGRDSFSYEYIPAERTENAY 205 (559)
Q Consensus 129 l~dG~i~v~GG~~~g~~~v~~ydp~~---t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w 205 (559)
++||+++++||+.+|.+.++.|+|+. +++|.+.++.|..+|||+++++|+||+|+|+||+..+++|+||+... ...
T Consensus 75 L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~-~~~ 153 (243)
T PF07250_consen 75 LPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP-GPG 153 (243)
T ss_pred CCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccC-CCC
Confidence 99999999999988889999999983 38899987669999999999999999999999999999999976431 122
Q ss_pred ceeccccccccccccCCccceEEEeeCCcEEEEecCcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeeccc--ccccc
Q 048136 206 SIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPL--KLYRD 283 (559)
Q Consensus 206 ~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl--~~~~~ 283 (559)
...++++.++.+..+.++||++++++||+||+++++..++||++++++.+.+|.||++.|+||.+|++||||| .+
T Consensus 154 ~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl~~~~--- 230 (243)
T PF07250_consen 154 PVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPLTDTP--- 230 (243)
T ss_pred ceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecCccCC---
Confidence 3345667666566788999999999999999999999999999999997789999999999999999999999 43
Q ss_pred cccccCcEEEEEcC
Q 048136 284 YYARVDAEVLICGG 297 (559)
Q Consensus 284 ~~~~~~gkI~v~GG 297 (559)
+ +.+..+|+||||
T Consensus 231 ~-~~~~~evlvCGG 243 (243)
T PF07250_consen 231 P-NNYTAEVLVCGG 243 (243)
T ss_pred C-CCCCeEEEEeCC
Confidence 2 236899999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.8e-38 Score=346.22 Aligned_cols=269 Identities=22% Similarity=0.297 Sum_probs=223.8
Q ss_pred CCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCCCEEeCccCCCcccccCeecCCCcEEE
Q 048136 57 NVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLIS 136 (559)
Q Consensus 57 ~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v 136 (559)
..++++++||... . + +....+++|||.+++|..++.++..+|..++++.+|+||+
T Consensus 283 ~~~~l~~vGG~~~--------~--~---------------~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv 337 (571)
T KOG4441|consen 283 VSGKLVAVGGYNR--------Q--G---------------QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYV 337 (571)
T ss_pred CCCeEEEECCCCC--------C--C---------------cccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEE
Confidence 4678999999752 0 1 1123489999999999999999999999999999999999
Q ss_pred EcCCCCC---CCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcEEEEcCCCC----CceeEE-cCCCCCCCccee
Q 048136 137 TGGFLGG---SRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGGRDS----FSYEYI-PAERTENAYSIP 208 (559)
Q Consensus 137 ~GG~~~g---~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~----~s~E~y-P~~~~~~~w~~~ 208 (559)
+||...+ .+++++|||. +++|+.+++ |+.+|..++++++ +|+||++||+++ .++|+| |.++ .|...
T Consensus 338 ~GG~~~~~~~l~~ve~YD~~-~~~W~~~a~-M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~v 411 (571)
T KOG4441|consen 338 VGGYDSGSDRLSSVERYDPR-TNQWTPVAP-MNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPV 411 (571)
T ss_pred EccccCCCcccceEEEecCC-CCceeccCC-ccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCC---ccccc
Confidence 9999623 5899999999 999999986 9999999999999 899999999986 579999 9987 59999
Q ss_pred ccccccccccccCCccceEEEeeCCcEEEEec--------CcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeeccccc
Q 048136 209 FQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--------NRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKL 280 (559)
Q Consensus 209 ~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--------~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~ 280 (559)
.||...+ +.++++..+|+||++|| +++|+|||.+|+|. .+|+|+. +|.+.++..
T Consensus 412 a~m~~~r--------~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~~-----~R~~~g~a~---- 473 (571)
T KOG4441|consen 412 APMLTRR--------SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT-LIAPMNT-----RRSGFGVAV---- 473 (571)
T ss_pred CCCCcce--------eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee-ecCCccc-----ccccceEEE----
Confidence 9997643 44667778999999999 47999999999999 6998885 233343322
Q ss_pred ccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee-cCCCCcccccEEEeeCCeEEEEcCc
Q 048136 281 YRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGA 359 (559)
Q Consensus 281 ~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~ 359 (559)
++++||++||.+. . ...+++|+|||.. ++|+.. +|+.+|..+. +++.+++||++||.
T Consensus 474 -------~~~~iYvvGG~~~-~-----------~~~~~VE~ydp~~--~~W~~v~~m~~~rs~~g-~~~~~~~ly~vGG~ 531 (571)
T KOG4441|consen 474 -------LNGKIYVVGGFDG-T-----------SALSSVERYDPET--NQWTMVAPMTSPRSAVG-VVVLGGKLYAVGGF 531 (571)
T ss_pred -------ECCEEEEECCccC-C-----------CccceEEEEcCCC--CceeEcccCcccccccc-EEEECCEEEEEecc
Confidence 4899999999874 1 2467799999986 999998 8999999995 66679999999996
Q ss_pred CCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEE
Q 048136 360 ELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANL 407 (559)
Q Consensus 360 ~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~l 407 (559)
+ |. ..+.++|+|||++| +|+...+|...|.+.+++++
T Consensus 532 ~-~~-------~~l~~ve~ydp~~d---~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 532 D-GN-------NNLNTVECYDPETD---TWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred c-Cc-------cccceeEEcCCCCC---ceeeCCCccccccCcceEEe
Confidence 5 32 34558999999999 99999888888887766655
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=323.98 Aligned_cols=251 Identities=23% Similarity=0.336 Sum_probs=208.4
Q ss_pred CCCcEEEEcCCCC-C--CCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcEEEEcCCC-C----CceeEE-cCCC
Q 048136 130 VNGNLISTGGFLG-G--SRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGGRD-S----FSYEYI-PAER 200 (559)
Q Consensus 130 ~dG~i~v~GG~~~-g--~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~-~----~s~E~y-P~~~ 200 (559)
..+.|+++||... + .+++++|||. +++|..+++ |+.+|..++++++ +|+|||+||.+ + .++|+| |.++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~-~~~w~~~a~-m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPK-TNEWSSLAP-MPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCC-cCcEeecCC-CCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 4688999999863 2 5889999999 999999996 9999999999999 89999999998 3 579999 9987
Q ss_pred CCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC-------cEEEeeCCCCeEEEECCCCCCCCCcccCCCce
Q 048136 201 TENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN-------RSILLDPRANYVLREYPPLPGGARNYPSTSTS 273 (559)
Q Consensus 201 ~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~-------~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~ 273 (559)
.|....||...|. . +.++..+|+||++||. ++|+|||.+|+|+ .+++|+. +|++++
T Consensus 360 ---~W~~~a~M~~~R~-------~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~-----~r~~~g 422 (571)
T KOG4441|consen 360 ---QWTPVAPMNTKRS-------D-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLT-----RRSGHG 422 (571)
T ss_pred ---ceeccCCccCccc-------c-ceeEEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCc-----ceeeeE
Confidence 4988889977653 2 3456679999999994 5999999999999 6887774 334555
Q ss_pred eecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee-cCCCCcccccEEEeeCCe
Q 048136 274 VLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGD 352 (559)
Q Consensus 274 v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~ 352 (559)
+.. ++|+||++||.+... ..++++|+|||.. ++|+.. +|+.+|.++. ++..||+
T Consensus 423 v~~-----------~~g~iYi~GG~~~~~-----------~~l~sve~YDP~t--~~W~~~~~M~~~R~~~g-~a~~~~~ 477 (571)
T KOG4441|consen 423 VAV-----------LGGKLYIIGGGDGSS-----------NCLNSVECYDPET--NTWTLIAPMNTRRSGFG-VAVLNGK 477 (571)
T ss_pred EEE-----------ECCEEEEEcCcCCCc-----------cccceEEEEcCCC--CceeecCCcccccccce-EEEECCE
Confidence 543 599999999987432 2578999999996 999998 9999999996 5666999
Q ss_pred EEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceEEeCCCCCCCCcccCCCCC
Q 048136 353 VLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDNDGYQEWAKFPT 432 (559)
Q Consensus 353 V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~~~~~~~~~~~~ 432 (559)
||++||.+ +. ....++|.|||+++ +|+.+++|+.+|..++++++ ++++|+.||..... .
T Consensus 478 iYvvGG~~-~~-------~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~--------~ 536 (571)
T KOG4441|consen 478 IYVVGGFD-GT-------SALSSVERYDPETN---QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNN--------N 536 (571)
T ss_pred EEEECCcc-CC-------CccceEEEEcCCCC---ceeEcccCccccccccEEEE--CCEEEEEecccCcc--------c
Confidence 99999987 31 23457999999999 99999999999999988888 99999999954432 2
Q ss_pred cceeeEEcCCCCCC
Q 048136 433 ELRLEKFSPPYLAP 446 (559)
Q Consensus 433 ~~~~E~y~Ppyl~~ 446 (559)
..++|.|+|..=.+
T Consensus 537 l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 537 LNTVECYDPETDTW 550 (571)
T ss_pred cceeEEcCCCCCce
Confidence 55899999988654
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1e-33 Score=312.77 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=189.6
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCC---CCCeEEEEeCCCCCCeecCCCccccccccceEEEcc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLG---GSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLA 178 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~---g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~ 178 (559)
+.+|||.+++|+.++.++..++..+++..+++||++||... ..+++++|||. +++|.++++ |+.+|.+++++++
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~-~n~W~~~~~-m~~~R~~~~~~~~- 350 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE-NKIHVELPP-MIKNRCRFSLAVI- 350 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC-CCeEeeCCC-CcchhhceeEEEE-
Confidence 68999999999999998887777778888999999999731 24789999999 999999986 9999999999988
Q ss_pred CCcEEEEcCCCC----CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC------------
Q 048136 179 DGSFLIFGGRDS----FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN------------ 241 (559)
Q Consensus 179 dG~VyvvGG~~~----~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~------------ 241 (559)
+|+|||+||.++ .++|+| |.++ .|....+|...+ ..+ ..+..+|+||++||.
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~~~mp~~r-------~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDD---KWKMLPDMPIAL-------SSY-GMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCC---eEEECCCCCccc-------ccc-cEEEECCEEEEEeCCCccccccccccc
Confidence 899999999864 469999 9886 588888886553 223 345679999999984
Q ss_pred -------------cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCcccccccc
Q 048136 242 -------------RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEV 308 (559)
Q Consensus 242 -------------~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 308 (559)
++++|||.+|+|+ .+++|+.. | .++++.. ++++||++||.+...
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~~-r----~~~~~~~-----------~~~~IYv~GG~~~~~------ 476 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWTG-T----IRPGVVS-----------HKDDIYVVCDIKDEK------ 476 (557)
T ss_pred ccccccccccccceEEEECCCCCeEe-ecCCCCcc-c----ccCcEEE-----------ECCEEEEEeCCCCCC------
Confidence 3789999999999 68888752 3 2233221 489999999975211
Q ss_pred ccccccccCceEEEEecCCCCceeee-cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCC
Q 048136 309 EKRLVPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGS 387 (559)
Q Consensus 309 ~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~ 387 (559)
...+.+|+|||.. +++|+.. +|+.+|..+++ ++.+|+|||+||.. |. .++|+|||.++
T Consensus 477 -----~~~~~ve~Ydp~~-~~~W~~~~~m~~~r~~~~~-~~~~~~iyv~Gg~~-~~----------~~~e~yd~~~~--- 535 (557)
T PHA02713 477 -----NVKTCIFRYNTNT-YNGWELITTTESRLSALHT-ILHDNTIMMLHCYE-SY----------MLQDTFNVYTY--- 535 (557)
T ss_pred -----ccceeEEEecCCC-CCCeeEccccCccccccee-EEECCEEEEEeeec-ce----------eehhhcCcccc---
Confidence 1234689999984 2699998 99999999964 55699999999975 21 27899999999
Q ss_pred eEEecCCC
Q 048136 388 RFTELAPS 395 (559)
Q Consensus 388 ~Wt~~~~~ 395 (559)
+|+.+++-
T Consensus 536 ~W~~~~~~ 543 (557)
T PHA02713 536 EWNHICHQ 543 (557)
T ss_pred cccchhhh
Confidence 99998764
No 5
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=100.00 E-value=5.1e-34 Score=240.79 Aligned_cols=98 Identities=26% Similarity=0.409 Sum_probs=89.0
Q ss_pred cCCCCCcccccCCC-CccCCCCeEEEEEEeccccccceEEEEEEcCCcccccccCCcceEEeeeeeeecccCCCcEEEEE
Q 048136 448 LADRRPMILVDETE-KAAPYGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVVV 526 (559)
Q Consensus 448 ~~~~RP~i~~~~~p-~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~v~l~~~~~~~~~~~g~~~~~v 526 (559)
.++.||+|+++ | .+++||++|+|+++. .+.+|+|+|++|+||++|||||+|+|+++.. . ++.++|
T Consensus 2 ~~a~RP~I~~~--p~~~i~yG~~f~v~~~~------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~~--~----~~~~~v 67 (101)
T cd02851 2 TLASRPVITSA--STQTAKVGDTITVSTDS------PISSASLVRYGSATHTVNTDQRRIPLTLFSV--G----GNSYSV 67 (101)
T ss_pred CCCCCCeeccC--CccccccCCEEEEEEec------cceEEEEEecccccccccCCccEEEeeeEec--C----CCEEEE
Confidence 46789999999 8 899999999999873 3799999999999999999999999999763 2 457888
Q ss_pred EcCCCCCccCCcceEEEEEc-CCCCCccEEEEeC
Q 048136 527 AMPPSGNIAPPGYYMLSVVL-KGIPSPSMWFQVK 559 (559)
Q Consensus 527 ~~P~~~~~~ppG~ymlf~~~-~gvPS~~~~v~i~ 559 (559)
++|+|++|||||||||||++ +||||+|+||+|+
T Consensus 68 ~~P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~ 101 (101)
T cd02851 68 QIPSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT 101 (101)
T ss_pred EcCCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence 89999999999999999995 8999999999985
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-32 Score=298.79 Aligned_cols=257 Identities=11% Similarity=0.087 Sum_probs=191.3
Q ss_pred cEEEEcCCCC-CCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcEEEEcCCCC-----CceeEE-cCCCCCCCc
Q 048136 133 NLISTGGFLG-GSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGGRDS-----FSYEYI-PAERTENAY 205 (559)
Q Consensus 133 ~i~v~GG~~~-g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~-----~s~E~y-P~~~~~~~w 205 (559)
.|++.||... ....+++|||. +++|..+++ |+.+|.+++++++ +|+|||+||.+. .++|+| |.++ .|
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~-~~~W~~l~~-mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n---~W 332 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNIN-TMEYSVIST-IPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENK---IH 332 (557)
T ss_pred EEEEecCccccCCCCEEEEeCC-CCeEEECCC-CCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCC---eE
Confidence 3555555311 12468999999 999999986 9999999999888 899999999742 468999 8886 48
Q ss_pred ceeccccccccccccCCccceEEEeeCCcEEEEecC-------cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeeccc
Q 048136 206 SIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN-------RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPL 278 (559)
Q Consensus 206 ~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~-------~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl 278 (559)
....||...+ .+ +..+..+|+||++||. ++|+|||.+|+|. .+++||.. + ++.++..
T Consensus 333 ~~~~~m~~~R-------~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~~~~mp~~-r----~~~~~~~-- 396 (557)
T PHA02713 333 VELPPMIKNR-------CR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK-MLPDMPIA-L----SSYGMCV-- 396 (557)
T ss_pred eeCCCCcchh-------hc-eeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-ECCCCCcc-c----ccccEEE--
Confidence 8777876543 23 3456679999999984 4899999999999 69998852 2 2333221
Q ss_pred ccccccccccCcEEEEEcCCCCcc-ccccc-ccc----ccccccCceEEEEecCCCCceeee-cCCCCcccccEEEeeCC
Q 048136 279 KLYRDYYARVDAEVLICGGSVPEA-FYFGE-VEK----RLVPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTG 351 (559)
Q Consensus 279 ~~~~~~~~~~~gkI~v~GG~~~~~-~~~~~-~~~----~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG 351 (559)
++++||++||.+... +.... .+. .....++++++|||.. ++|+.. +|+.+|..+++ +..+|
T Consensus 397 ---------~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t--d~W~~v~~m~~~r~~~~~-~~~~~ 464 (557)
T PHA02713 397 ---------LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN--NIWETLPNFWTGTIRPGV-VSHKD 464 (557)
T ss_pred ---------ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCC--CeEeecCCCCcccccCcE-EEECC
Confidence 489999999975210 00000 000 0001257899999986 899998 99999999864 55699
Q ss_pred eEEEEcCcCCCCCCccCCCCCCcccEEEeCCC-CCCCeEEecCCCCCCccceeeeEECCCCceEEeCCCCCCCCcccCCC
Q 048136 352 DVLLINGAELGSAGWKDADKPCFKPLLYKPSK-PPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDNDGYQEWAKF 430 (559)
Q Consensus 352 ~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t-~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~~~~~~~~~~ 430 (559)
+|||+||.+ +.. .-...+|+|||++ + +|+.+++|+.+|..|+++++ ||+|||+||....
T Consensus 465 ~IYv~GG~~-~~~------~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~-------- 524 (557)
T PHA02713 465 DIYVVCDIK-DEK------NVKTCIFRYNTNTYN---GWELITTTESRLSALHTILH--DNTIMMLHCYESY-------- 524 (557)
T ss_pred EEEEEeCCC-CCC------ccceeEEEecCCCCC---CeeEccccCcccccceeEEE--CCEEEEEeeecce--------
Confidence 999999975 211 1123579999999 9 99999999999999999888 9999999996431
Q ss_pred CCcceeeEEcCCCCCC
Q 048136 431 PTELRLEKFSPPYLAP 446 (559)
Q Consensus 431 ~~~~~~E~y~Ppyl~~ 446 (559)
..+|+|+|..--+
T Consensus 525 ---~~~e~yd~~~~~W 537 (557)
T PHA02713 525 ---MLQDTFNVYTYEW 537 (557)
T ss_pred ---eehhhcCcccccc
Confidence 2689999987543
No 7
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=100.00 E-value=2.7e-33 Score=236.83 Aligned_cols=97 Identities=40% Similarity=0.698 Sum_probs=68.3
Q ss_pred CCcccccCCCCccCCCCeEEEEEEeccccccceEEEEEEcCCcccccccCCcceEEeeeeeeecccCCCcEEEEEEcCCC
Q 048136 452 RPMILVDETEKAAPYGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVVVAMPPS 531 (559)
Q Consensus 452 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~v~l~~~~~~~~~~~g~~~~~v~~P~~ 531 (559)
||+|+++ |+.+.||++|+|+++.+. ..++.+|+|+|++|+|||+|||||+|+|++... + +++++|++|+|
T Consensus 1 RP~i~~~--p~~i~yg~~~tv~~~~~~--~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~~--~----~~~~~v~~P~~ 70 (98)
T PF09118_consen 1 RPVITSA--PTTIKYGQTFTVTVTVPS--AASIVKVSLVRPGFVTHSFNMGQRMVELEFVSG--G----GNTVTVTAPPN 70 (98)
T ss_dssp ---EEES---SEEETT-EEEEEE--SS-----ESEEEEEE--EEETTB-SS-EEEEE-EEEE--S----SSEEEEE--S-
T ss_pred CCccccC--CCeEecCCEEEEEEECCC--ccceEEEEEEeCCcccccccCCCCEEeeeeecC--C----CCEEEEECCCC
Confidence 9999998 999999999999998643 347899999999999999999999999999443 2 67999999999
Q ss_pred CCccCCcceEEEEEc-CCCCCccEEEEe
Q 048136 532 GNIAPPGYYMLSVVL-KGIPSPSMWFQV 558 (559)
Q Consensus 532 ~~~~ppG~ymlf~~~-~gvPS~~~~v~i 558 (559)
++|+|||||||||++ +||||+|+||+|
T Consensus 71 ~~vaPPG~YmLFvv~~~GvPS~a~wV~v 98 (98)
T PF09118_consen 71 PNVAPPGYYMLFVVNDDGVPSVAKWVQV 98 (98)
T ss_dssp TTTS-SEEEEEEEEETTS-B---EEEEE
T ss_pred CccCCCcCEEEEEEcCCCcccccEEEEC
Confidence 999999999999999 999999999997
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=4.4e-30 Score=268.88 Aligned_cols=251 Identities=14% Similarity=0.179 Sum_probs=178.1
Q ss_pred cCeecCCCcEEEEcCCCCCCCeEEEEeC--CCCCCeecCCCccc-cccccceEEEccCCcEEEEcCCCC----------C
Q 048136 125 SGGLDVNGNLISTGGFLGGSRTTRYLWG--CPTCDWTEYPTALK-DGRWYATQALLADGSFLIFGGRDS----------F 191 (559)
Q Consensus 125 ~~~~l~dG~i~v~GG~~~g~~~v~~ydp--~~t~~W~~~~~~m~-~~R~y~s~~~L~dG~VyvvGG~~~----------~ 191 (559)
+.+++.+++|||+||.. .+.+++||+ . +++|.++++ |+ .+|..++++++ |++|||+||... .
T Consensus 11 ~~~~~~~~~vyv~GG~~--~~~~~~~d~~~~-~~~W~~l~~-~p~~~R~~~~~~~~-~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSA--GTSWYKLDLKKP-SKGWQKIAD-FPGGPRNQAVAAAI-DGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred ceEEEECCEEEEEcccc--CCeeEEEECCCC-CCCceECCC-CCCCCcccceEEEE-CCEEEEEeCCCCCCCCCcceecc
Confidence 34556799999999973 367889996 4 789999986 98 58999988888 899999999742 3
Q ss_pred ceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC-----------------------------
Q 048136 192 SYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN----------------------------- 241 (559)
Q Consensus 192 s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~----------------------------- 241 (559)
++|+| |.++ .|....+.+... +..+.++.+.+|+||++||.
T Consensus 86 ~v~~Yd~~~~---~W~~~~~~~p~~------~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 86 DVYRYDPKKN---SWQKLDTRSPVG------LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred cEEEEECCCC---EEecCCCCCCCc------ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 58899 8876 477654222111 12222333679999999983
Q ss_pred ------------cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccc
Q 048136 242 ------------RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVE 309 (559)
Q Consensus 242 ------------~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~ 309 (559)
++|+|||.+++|+ .+++||..+ +.++++.. +++|||++||.....
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~-~~~~~p~~~----r~~~~~~~-----------~~~~iyv~GG~~~~~------- 213 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWR-NLGENPFLG----TAGSAIVH-----------KGNKLLLINGEIKPG------- 213 (346)
T ss_pred hCCChhHcCccceEEEEECCCCcee-ECccCCCCc----CCCceEEE-----------ECCEEEEEeeeeCCC-------
Confidence 4789999999999 588887422 23444332 489999999975211
Q ss_pred cccccccCceEEEEecCCCCceeee-cCCCCcc-------cccEEEeeCCeEEEEcCcCCCCC--------CccC-CCCC
Q 048136 310 KRLVPALDDCARMVVTSPDPVWTTE-KMPTPRV-------MSDGVLLPTGDVLLINGAELGSA--------GWKD-ADKP 372 (559)
Q Consensus 310 ~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~-------~~~av~LpdG~V~vvGG~~~g~~--------g~~~-~~~~ 372 (559)
..+..+++||+....++|+.. +|+.+|. .+ .+++.+|+|||+||...... .+.. ....
T Consensus 214 ----~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~-~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 288 (346)
T TIGR03547 214 ----LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGA-FAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIK 288 (346)
T ss_pred ----ccchheEEEEecCCCceeeecCCCCCCCCCccccccEE-eeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCc
Confidence 122345667775445799988 9988763 33 24557999999999752100 0000 0011
Q ss_pred CcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceEEeCCCCCC
Q 048136 373 CFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDND 422 (559)
Q Consensus 373 ~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~~ 422 (559)
+.++|+|||+++ +|+.+++|+.+|.+|+++++ +|+|||+||....
T Consensus 289 ~~~~e~yd~~~~---~W~~~~~lp~~~~~~~~~~~--~~~iyv~GG~~~~ 333 (346)
T TIGR03547 289 AWSSEVYALDNG---KWSKVGKLPQGLAYGVSVSW--NNGVLLIGGENSG 333 (346)
T ss_pred eeEeeEEEecCC---cccccCCCCCCceeeEEEEc--CCEEEEEeccCCC
Confidence 246899999999 99999999999998866555 9999999997543
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=7.7e-29 Score=262.33 Aligned_cols=279 Identities=15% Similarity=0.154 Sum_probs=188.2
Q ss_pred EEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCC-CCCeecCCCccc-cccccceEEEccCCcEEEEcCCC
Q 048136 112 VTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCP-TCDWTEYPTALK-DGRWYATQALLADGSFLIFGGRD 189 (559)
Q Consensus 112 w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~-t~~W~~~~~~m~-~~R~y~s~~~L~dG~VyvvGG~~ 189 (559)
++.++.++..+-...+++.+++|||+||.. .+.+++||... +++|.++++ |+ .+|..++++++ +++|||+||..
T Consensus 19 ~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~--~~~~~~~d~~~~~~~W~~l~~-~p~~~r~~~~~v~~-~~~IYV~GG~~ 94 (376)
T PRK14131 19 AEQLPDLPVPFKNGTGAIDNNTVYVGLGSA--GTSWYKLDLNAPSKGWTKIAA-FPGGPREQAVAAFI-DGKLYVFGGIG 94 (376)
T ss_pred cccCCCCCcCccCCeEEEECCEEEEEeCCC--CCeEEEEECCCCCCCeEECCc-CCCCCcccceEEEE-CCEEEEEcCCC
Confidence 444555554433334566799999999973 35688999752 478999986 86 58988888888 89999999975
Q ss_pred C----------CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC-----------------
Q 048136 190 S----------FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN----------------- 241 (559)
Q Consensus 190 ~----------~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~----------------- 241 (559)
. .++++| |.++ .|....++.... +..+.++++.+++||++||.
T Consensus 95 ~~~~~~~~~~~~~v~~YD~~~n---~W~~~~~~~p~~------~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~ 165 (376)
T PRK14131 95 KTNSEGSPQVFDDVYKYDPKTN---SWQKLDTRSPVG------LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGK 165 (376)
T ss_pred CCCCCCceeEcccEEEEeCCCC---EEEeCCCCCCCc------ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhccc
Confidence 3 357889 8876 487655421111 12333344379999999983
Q ss_pred ------------------------cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcC
Q 048136 242 ------------------------RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGG 297 (559)
Q Consensus 242 ------------------------~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG 297 (559)
.+++|||.+|+|+ .+++||.. ++.+++++. ++++||++||
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~-~~~~~p~~----~~~~~a~v~-----------~~~~iYv~GG 229 (376)
T PRK14131 166 DKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWK-NAGESPFL----GTAGSAVVI-----------KGNKLWLING 229 (376)
T ss_pred chhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeee-ECCcCCCC----CCCcceEEE-----------ECCEEEEEee
Confidence 3799999999999 58888742 223444432 4899999999
Q ss_pred CCCccccccccccccccccCceEEEEecCCCCceeee-cCCCCcccc-------cEEEeeCCeEEEEcCcCCCCC-----
Q 048136 298 SVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMPTPRVMS-------DGVLLPTGDVLLINGAELGSA----- 364 (559)
Q Consensus 298 ~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~-------~av~LpdG~V~vvGG~~~g~~----- 364 (559)
..... ..+..+..+++....++|+.. +||.+|..+ .++++.+|+|||+||......
T Consensus 230 ~~~~~-----------~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~ 298 (376)
T PRK14131 230 EIKPG-----------LRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQ 298 (376)
T ss_pred eECCC-----------cCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhh
Confidence 64211 112233333333234899998 999887421 124567999999999752110
Q ss_pred -C--cc-CCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceEEeCCCCCCCCcccCCCCCcceeeEEc
Q 048136 365 -G--WK-DADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFS 440 (559)
Q Consensus 365 -g--~~-~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~~~~~~~~~~~~~~~~E~y~ 440 (559)
+ +. .....+.++|+|||+++ +|+.+++|+.+|.+|+++++ +++|||+||..... ....+++.|.
T Consensus 299 ~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~r~~~~av~~--~~~iyv~GG~~~~~-------~~~~~v~~~~ 366 (376)
T PRK14131 299 NGKLYAHEGLKKSWSDEIYALVNG---KWQKVGELPQGLAYGVSVSW--NNGVLLIGGETAGG-------KAVSDVTLLS 366 (376)
T ss_pred cCCcccccCCcceeehheEEecCC---cccccCcCCCCccceEEEEe--CCEEEEEcCCCCCC-------cEeeeEEEEE
Confidence 0 00 00012236899999999 99999999999999976555 99999999965431 1244788887
Q ss_pred CC
Q 048136 441 PP 442 (559)
Q Consensus 441 Pp 442 (559)
|.
T Consensus 367 ~~ 368 (376)
T PRK14131 367 WD 368 (376)
T ss_pred Ec
Confidence 75
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=2.8e-28 Score=265.56 Aligned_cols=217 Identities=17% Similarity=0.221 Sum_probs=167.5
Q ss_pred EeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCC--CCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcE
Q 048136 105 YNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLG--GSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSF 182 (559)
Q Consensus 105 yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~--g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~V 182 (559)
|++.+++|..+. ..| .++..++.||++||..+ ..+++++|||. +++|.++++ |+.+|.+++++++ ||+|
T Consensus 251 ~~~~~~~~~~~~----~~~--~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~-~~~W~~~~~-m~~~r~~~~~v~~-~~~i 321 (480)
T PHA02790 251 YPMNMDQIIDIF----HMC--TSTHVGEVVYLIGGWMNNEIHNNAIAVNYI-SNNWIPIPP-MNSPRLYASGVPA-NNKL 321 (480)
T ss_pred cCCcccceeecc----CCc--ceEEECCEEEEEcCCCCCCcCCeEEEEECC-CCEEEECCC-CCchhhcceEEEE-CCEE
Confidence 456666776532 122 23447899999999743 24689999999 999999986 9999999999888 8999
Q ss_pred EEEcCCCC-CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec-----CcEEEeeCCCCeEEE
Q 048136 183 LIFGGRDS-FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN-----NRSILLDPRANYVLR 255 (559)
Q Consensus 183 yvvGG~~~-~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg-----~~~e~yDp~t~~W~~ 255 (559)
|++||.+. .++|+| |.++ .|....||...+ .. ++.+..+|+||++|| .++|+|||++++|+
T Consensus 322 YviGG~~~~~sve~ydp~~n---~W~~~~~l~~~r-------~~-~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~- 389 (480)
T PHA02790 322 YVVGGLPNPTSVERWFHGDA---AWVNMPSLLKPR-------CN-PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ- 389 (480)
T ss_pred EEECCcCCCCceEEEECCCC---eEEECCCCCCCC-------cc-cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE-
Confidence 99999854 579999 8876 588888876543 23 345667999999998 35899999999999
Q ss_pred ECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee-
Q 048136 256 EYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE- 334 (559)
Q Consensus 256 ~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~- 334 (559)
.+|+||. |+.++++.. ++++||++||. +++|||.. ++|+..
T Consensus 390 ~~~~m~~-----~r~~~~~~~-----------~~~~IYv~GG~--------------------~e~ydp~~--~~W~~~~ 431 (480)
T PHA02790 390 FGPSTYY-----PHYKSCALV-----------FGRRLFLVGRN--------------------AEFYCESS--NTWTLID 431 (480)
T ss_pred eCCCCCC-----ccccceEEE-----------ECCEEEEECCc--------------------eEEecCCC--CcEeEcC
Confidence 5888874 333333322 48999999983 25788764 899998
Q ss_pred cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEec
Q 048136 335 KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTEL 392 (559)
Q Consensus 335 ~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~ 392 (559)
+|+.+|..+. +++.+|+|||+||.+.+ ..+.++|+|||+++ +|+.+
T Consensus 432 ~m~~~r~~~~-~~v~~~~IYviGG~~~~--------~~~~~ve~Yd~~~~---~W~~~ 477 (480)
T PHA02790 432 DPIYPRDNPE-LIIVDNKLLLIGGFYRG--------SYIDTIEVYNNRTY---SWNIW 477 (480)
T ss_pred CCCCCccccE-EEEECCEEEEECCcCCC--------cccceEEEEECCCC---eEEec
Confidence 9999999996 45669999999997521 12347999999999 99875
No 11
>PLN02153 epithiospecifier protein
Probab=99.96 E-value=2.1e-27 Score=248.28 Aligned_cols=282 Identities=12% Similarity=0.095 Sum_probs=190.2
Q ss_pred CCCCEEeCcc----CCCcccccCeecCCCcEEEEcCCCCC----CCeEEEEeCCCCCCeecCCCccc-cccc---cceEE
Q 048136 108 NTLQVTPLKV----ITDTWCSSGGLDVNGNLISTGGFLGG----SRTTRYLWGCPTCDWTEYPTALK-DGRW---YATQA 175 (559)
Q Consensus 108 ~t~~w~~~~~----~~~~~c~~~~~l~dG~i~v~GG~~~g----~~~v~~ydp~~t~~W~~~~~~m~-~~R~---y~s~~ 175 (559)
...+|+.+.. ++..++..+++..+++|||+||.... .+++++||+. +++|++++. |. .+|. .++++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W~~~~~-~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFN-THTWSIAPA-NGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECC-CCEEEEcCc-cCCCCCCccCceEEE
Confidence 4567988875 45567666777789999999997421 3579999999 999999875 43 4443 46667
Q ss_pred EccCCcEEEEcCCCC----CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC---------
Q 048136 176 LLADGSFLIFGGRDS----FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN--------- 241 (559)
Q Consensus 176 ~L~dG~VyvvGG~~~----~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~--------- 241 (559)
++ +++|||+||.+. ..+++| |+++ .|....++.... .+.....+.++..+++||++||.
T Consensus 83 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~---~W~~~~~~~~~~---~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 83 AV-GTKLYIFGGRDEKREFSDFYSYDTVKN---EWTFLTKLDEEG---GPEARTFHSMASDENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred EE-CCEEEEECCCCCCCccCcEEEEECCCC---EEEEeccCCCCC---CCCCceeeEEEEECCEEEEECCccCCCccCCC
Confidence 77 899999999754 368899 8876 587655541100 01112234456679999999983
Q ss_pred ----cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccC
Q 048136 242 ----RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALD 317 (559)
Q Consensus 242 ----~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~ 317 (559)
++++||+++++|+ .++++... -.+|.++++.+ ++++||++||.... +... +.....++
T Consensus 156 ~~~~~v~~yd~~~~~W~-~l~~~~~~--~~~r~~~~~~~-----------~~~~iyv~GG~~~~-~~~g---G~~~~~~~ 217 (341)
T PLN02153 156 ERFRTIEAYNIADGKWV-QLPDPGEN--FEKRGGAGFAV-----------VQGKIWVVYGFATS-ILPG---GKSDYESN 217 (341)
T ss_pred cccceEEEEECCCCeEe-eCCCCCCC--CCCCCcceEEE-----------ECCeEEEEeccccc-cccC---CccceecC
Confidence 3789999999999 57765321 12344444332 48999999997521 1000 00001256
Q ss_pred ceEEEEecCCCCceeee----cCCCCcccccEEEeeCCeEEEEcCcCCCC-CCccCCCCCCcccEEEeCCCCCCCeEEec
Q 048136 318 DCARMVVTSPDPVWTTE----KMPTPRVMSDGVLLPTGDVLLINGAELGS-AGWKDADKPCFKPLLYKPSKPPGSRFTEL 392 (559)
Q Consensus 318 s~~~~d~~~~~~~W~~~----~M~~~R~~~~av~LpdG~V~vvGG~~~g~-~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~ 392 (559)
.+++||+.. ++|+.. .||.+|..++ +++.+++|||+||..... .+.........++++|||+++ +|+.+
T Consensus 218 ~v~~yd~~~--~~W~~~~~~g~~P~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~~~ 291 (341)
T PLN02153 218 AVQFFDPAS--GKWTEVETTGAKPSARSVFA-HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWEKL 291 (341)
T ss_pred ceEEEEcCC--CcEEeccccCCCCCCcceee-eEEECCEEEEECcccCCccccccccccccccEEEEEcCcc---EEEec
Confidence 799999985 899985 3788999886 456699999999974110 000000111237899999999 99987
Q ss_pred C-----CCCCCccceeeeEECCCCceEEeCCCCCC
Q 048136 393 A-----PSDIPRMYHSVANLLPDGRVFVGGSNDND 422 (559)
Q Consensus 393 ~-----~~~~~R~yhs~a~llpdG~Vlv~GG~~~~ 422 (559)
. +++..|.+|+++++.-+++||+.||....
T Consensus 292 ~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 292 GECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred cCCCCCCCCCccccccccccCCcceEEEEcCcCCC
Confidence 5 56666766667776556799999997543
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=5.7e-27 Score=248.03 Aligned_cols=286 Identities=14% Similarity=0.082 Sum_probs=193.5
Q ss_pred cEEecCCCCCcceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCC--CCCEEe
Q 048136 37 KWELLPNNPGISAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVN--TLQVTP 114 (559)
Q Consensus 37 ~W~~~~~~~~~~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~--t~~w~~ 114 (559)
.++.+++++..+..+++++ .+++||++||.. + .....||+. +++|+.
T Consensus 18 ~~~~l~~lP~~~~~~~~~~-~~~~iyv~gG~~------------~------------------~~~~~~d~~~~~~~W~~ 66 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAI-DNNTVYVGLGSA------------G------------------TSWYKLDLNAPSKGWTK 66 (376)
T ss_pred ecccCCCCCcCccCCeEEE-ECCEEEEEeCCC------------C------------------CeEEEEECCCCCCCeEE
Confidence 4555666653333345555 699999999852 1 014577875 578999
Q ss_pred CccCC-CcccccCeecCCCcEEEEcCCCC----C----CCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcEEEE
Q 048136 115 LKVIT-DTWCSSGGLDVNGNLISTGGFLG----G----SRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIF 185 (559)
Q Consensus 115 ~~~~~-~~~c~~~~~l~dG~i~v~GG~~~----g----~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~Vyvv 185 (559)
++.++ ..++...++..+++|||+||... + .+++++|||. +++|+.++..++..|..++++++.|++|||+
T Consensus 67 l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~-~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~ 145 (376)
T PRK14131 67 IAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK-TNSWQKLDTRSPVGLAGHVAVSLHNGKAYIT 145 (376)
T ss_pred CCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC-CCEEEeCCCCCCCcccceEEEEeeCCEEEEE
Confidence 98775 35666677788999999999743 1 3679999999 9999999742456677777776459999999
Q ss_pred cCCCC--------------------------------------CceeEE-cCCCCCCCcceeccccccccccccCCccce
Q 048136 186 GGRDS--------------------------------------FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPF 226 (559)
Q Consensus 186 GG~~~--------------------------------------~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~ 226 (559)
||.+. ..+++| |.++ .|....++.... ...+
T Consensus 146 GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~---~W~~~~~~p~~~-------~~~~ 215 (376)
T PRK14131 146 GGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN---QWKNAGESPFLG-------TAGS 215 (376)
T ss_pred CCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC---eeeECCcCCCCC-------CCcc
Confidence 99742 357899 8886 487766654311 2234
Q ss_pred EEEeeCCcEEEEecC------cEE----EeeCCCCeEEEECCCCCCCCCc--ccC--CCc-eeecccccccccccccCcE
Q 048136 227 VYLVPDGNLYIFANN------RSI----LLDPRANYVLREYPPLPGGARN--YPS--TST-SVLLPLKLYRDYYARVDAE 291 (559)
Q Consensus 227 ~~~l~~G~iyv~Gg~------~~e----~yDp~t~~W~~~~p~mp~~~~~--~p~--~g~-~v~lpl~~~~~~~~~~~gk 291 (559)
+++..+++||++||. ..+ .||+++++|. .+++||.. |. .++ .+. +++ .+++
T Consensus 216 a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~~-~~~~~~~~~~~~~a~~------------~~~~ 281 (376)
T PRK14131 216 AVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ-KLPDLPPA-PGGSSQEGVAGAFAGY------------SNGV 281 (376)
T ss_pred eEEEECCEEEEEeeeECCCcCChhheEEEecCCCccee-ecCCCCCC-CcCCcCCccceEecee------------ECCE
Confidence 556679999999983 223 4588999999 68888853 21 111 111 122 3899
Q ss_pred EEEEcCCCCccccccccc-ccc----ccccCceEEEEecCCCCceeee-cCCCCcccccEEEeeCCeEEEEcCcCCCCCC
Q 048136 292 VLICGGSVPEAFYFGEVE-KRL----VPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAELGSAG 365 (559)
Q Consensus 292 I~v~GG~~~~~~~~~~~~-~~~----~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g 365 (559)
|||+||.+.......... ..+ .....++|+||+.. ++|+.. +||.+|..+. ++..+|+|||+||...+
T Consensus 282 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~--~~W~~~~~lp~~r~~~~-av~~~~~iyv~GG~~~~--- 355 (376)
T PRK14131 282 LLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN--GKWQKVGELPQGLAYGV-SVSWNNGVLLIGGETAG--- 355 (376)
T ss_pred EEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC--CcccccCcCCCCccceE-EEEeCCEEEEEcCCCCC---
Confidence 999999752100000000 000 01123578999985 899988 9999999885 56669999999997531
Q ss_pred ccCCCCCCcccEEEeCCCCCCCeEEe
Q 048136 366 WKDADKPCFKPLLYKPSKPPGSRFTE 391 (559)
Q Consensus 366 ~~~~~~~~~~~e~YDP~t~~g~~Wt~ 391 (559)
.....++++|+++.+ +++.
T Consensus 356 ----~~~~~~v~~~~~~~~---~~~~ 374 (376)
T PRK14131 356 ----GKAVSDVTLLSWDGK---KLTV 374 (376)
T ss_pred ----CcEeeeEEEEEEcCC---EEEE
Confidence 123457999999987 7764
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=6.9e-27 Score=244.76 Aligned_cols=255 Identities=12% Similarity=0.033 Sum_probs=176.4
Q ss_pred ceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeC--CCCCEEeCccCC-Ccccc
Q 048136 48 SAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNV--NTLQVTPLKVIT-DTWCS 124 (559)
Q Consensus 48 ~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp--~t~~w~~~~~~~-~~~c~ 124 (559)
+..+++++ .+++||++||.. . ....+||+ .+++|+.++.++ ..++.
T Consensus 8 ~~~~~~~~-~~~~vyv~GG~~------------~------------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~ 56 (346)
T TIGR03547 8 FKNGTGAI-IGDKVYVGLGSA------------G------------------TSWYKLDLKKPSKGWQKIADFPGGPRNQ 56 (346)
T ss_pred ccCceEEE-ECCEEEEEcccc------------C------------------CeeEEEECCCCCCCceECCCCCCCCccc
Confidence 33355645 589999999852 0 11467885 678999999887 46777
Q ss_pred cCeecCCCcEEEEcCCCC--------CCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcEEEEcCCCC------
Q 048136 125 SGGLDVNGNLISTGGFLG--------GSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGGRDS------ 190 (559)
Q Consensus 125 ~~~~l~dG~i~v~GG~~~--------g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~------ 190 (559)
.+++..+++|||+||... ..+++++|||. +++|++++..|+..|..++++++.+|+|||+||.+.
T Consensus 57 ~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~-~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~ 135 (346)
T TIGR03547 57 AVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPK-KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGY 135 (346)
T ss_pred ceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECC-CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHH
Confidence 788888999999999742 13679999999 999999863366677666666334999999999752
Q ss_pred --------------------------------CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEE
Q 048136 191 --------------------------------FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYI 237 (559)
Q Consensus 191 --------------------------------~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv 237 (559)
.++|+| |.++ +|....+|.... .+.+.++..+|+||+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~---~W~~~~~~p~~~-------r~~~~~~~~~~~iyv 205 (346)
T TIGR03547 136 FADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN---QWRNLGENPFLG-------TAGSAIVHKGNKLLL 205 (346)
T ss_pred HhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC---ceeECccCCCCc-------CCCceEEEECCEEEE
Confidence 468999 9886 588777765321 123445667999999
Q ss_pred EecC--------cEEEee--CCCCeEEEECCCCCCCCCcc-cC--CCceeecccccccccccccCcEEEEEcCCCCcccc
Q 048136 238 FANN--------RSILLD--PRANYVLREYPPLPGGARNY-PS--TSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFY 304 (559)
Q Consensus 238 ~Gg~--------~~e~yD--p~t~~W~~~~p~mp~~~~~~-p~--~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 304 (559)
+||. ..++|| +.+++|+ .+++||.. |.. ++ .++++.+ .+++||++||.+.....
T Consensus 206 ~GG~~~~~~~~~~~~~y~~~~~~~~W~-~~~~m~~~-r~~~~~~~~~~~a~~-----------~~~~Iyv~GG~~~~~~~ 272 (346)
T TIGR03547 206 INGEIKPGLRTAEVKQYLFTGGKLEWN-KLPPLPPP-KSSSQEGLAGAFAGI-----------SNGVLLVAGGANFPGAQ 272 (346)
T ss_pred EeeeeCCCccchheEEEEecCCCceee-ecCCCCCC-CCCccccccEEeeeE-----------ECCEEEEeecCCCCCch
Confidence 9984 244555 5778999 68998852 321 11 2222211 48999999997521000
Q ss_pred cccc-cccc----ccccCceEEEEecCCCCceeee-cCCCCcccccEEEeeCCeEEEEcCcC
Q 048136 305 FGEV-EKRL----VPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAE 360 (559)
Q Consensus 305 ~~~~-~~~~----~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~ 360 (559)
.... ...+ .....++|+||+.. ++|+.. +||.+|..+. +++.+|+|||+||..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~yd~~~--~~W~~~~~lp~~~~~~~-~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 273 ENYKNGKLYAHEGLIKAWSSEVYALDN--GKWSKVGKLPQGLAYGV-SVSWNNGVLLIGGEN 331 (346)
T ss_pred hhhhcCCccccCCCCceeEeeEEEecC--CcccccCCCCCCceeeE-EEEcCCEEEEEeccC
Confidence 0000 0000 01234689999985 899998 9999998874 566799999999986
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=6.6e-27 Score=242.61 Aligned_cols=251 Identities=16% Similarity=0.150 Sum_probs=173.4
Q ss_pred CeecCCCcEEEEcCCCCC------------CCeEEEEe-CCCCCCeecCCCccccccccceEEEccCCcEEEEcCCCC--
Q 048136 126 GGLDVNGNLISTGGFLGG------------SRTTRYLW-GCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGGRDS-- 190 (559)
Q Consensus 126 ~~~l~dG~i~v~GG~~~g------------~~~v~~yd-p~~t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~-- 190 (559)
.+.+.++.|||+||.... .+++.+|+ +..+.+|.++++ |+.+|.+++++++ +++||++||.+.
T Consensus 8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~-lp~~r~~~~~~~~-~~~lyviGG~~~~~ 85 (323)
T TIGR03548 8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ-LPYEAAYGASVSV-ENGIYYIGGSNSSE 85 (323)
T ss_pred eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc-CCccccceEEEEE-CCEEEEEcCCCCCC
Confidence 345579999999997421 12455664 431237999986 9999988888887 899999999764
Q ss_pred --CceeEE-cCCCCC-CCcceeccccccccccccCCccceEEEeeCCcEEEEecC-------cEEEeeCCCCeEEEECCC
Q 048136 191 --FSYEYI-PAERTE-NAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN-------RSILLDPRANYVLREYPP 259 (559)
Q Consensus 191 --~s~E~y-P~~~~~-~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~-------~~e~yDp~t~~W~~~~p~ 259 (559)
.++++| +.+++| ..|....+++..+ .. +..++.+++||++||. ++++||+++++|+ .+++
T Consensus 86 ~~~~v~~~d~~~~~w~~~~~~~~~lp~~~-------~~-~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~ 156 (323)
T TIGR03548 86 RFSSVYRITLDESKEELICETIGNLPFTF-------EN-GSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF-ELPD 156 (323)
T ss_pred CceeEEEEEEcCCceeeeeeEcCCCCcCc-------cC-ceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee-ECCC
Confidence 357888 766542 1234444554332 22 3455679999999984 6899999999999 6888
Q ss_pred CCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee-cCC-
Q 048136 260 LPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMP- 337 (559)
Q Consensus 260 mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~- 337 (559)
||..+|. +++++. ++++||++||.+.. ...++++||+.+ ++|+.. +|+
T Consensus 157 ~p~~~r~----~~~~~~-----------~~~~iYv~GG~~~~-------------~~~~~~~yd~~~--~~W~~~~~~~~ 206 (323)
T TIGR03548 157 FPGEPRV----QPVCVK-----------LQNELYVFGGGSNI-------------AYTDGYKYSPKK--NQWQKVADPTT 206 (323)
T ss_pred CCCCCCC----cceEEE-----------ECCEEEEEcCCCCc-------------cccceEEEecCC--CeeEECCCCCC
Confidence 8753332 333221 48999999997531 123578999986 899987 764
Q ss_pred --CCc--ccccEEEeeCCeEEEEcCcCCCCC-----CccC-----------------CCC--CCcccEEEeCCCCCCCeE
Q 048136 338 --TPR--VMSDGVLLPTGDVLLINGAELGSA-----GWKD-----------------ADK--PCFKPLLYKPSKPPGSRF 389 (559)
Q Consensus 338 --~~R--~~~~av~LpdG~V~vvGG~~~g~~-----g~~~-----------------~~~--~~~~~e~YDP~t~~g~~W 389 (559)
.+| ..+.++++.+++|||+||.+.... .+.. .+. -..++|+|||+++ +|
T Consensus 207 ~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W 283 (323)
T TIGR03548 207 DSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KW 283 (323)
T ss_pred CCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---ee
Confidence 333 344445666899999999752100 0000 000 0236999999999 99
Q ss_pred EecCCCC-CCccceeeeEECCCCceEEeCCCCCC
Q 048136 390 TELAPSD-IPRMYHSVANLLPDGRVFVGGSNDND 422 (559)
Q Consensus 390 t~~~~~~-~~R~yhs~a~llpdG~Vlv~GG~~~~ 422 (559)
+.+++++ .+|..|+.+++ |++||++||....
T Consensus 284 ~~~~~~p~~~r~~~~~~~~--~~~iyv~GG~~~p 315 (323)
T TIGR03548 284 KSIGNSPFFARCGAALLLT--GNNIFSINGELKP 315 (323)
T ss_pred eEcccccccccCchheEEE--CCEEEEEeccccC
Confidence 9999887 58988877666 9999999997543
No 15
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=9.1e-27 Score=257.69 Aligned_cols=243 Identities=13% Similarity=0.160 Sum_probs=185.9
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCC---CCeEEEEeCCCCCCeecCCCccccccccceEEEcc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGG---SRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLA 178 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g---~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~ 178 (559)
..+|++.+++|.++...+...| .++++.+++||++||.... .+++++||+. +++|..+++ |+.+|.+++++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~-~~~~R~~~~~~~~- 341 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHYVYC-FGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK-TKSWNKVPE-LIYPRKNPGVTVF- 341 (534)
T ss_pred eeecchhhhhcccccCcccccc-ceEEEECCEEEEECCCcCCCCeeccEEEEeCC-CCeeeECCC-CCcccccceEEEE-
Confidence 4678998999999876654445 3566779999999998532 3578999999 999999986 9999999999888
Q ss_pred CCcEEEEcCCCC----CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec--------CcEEE
Q 048136 179 DGSFLIFGGRDS----FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--------NRSIL 245 (559)
Q Consensus 179 dG~VyvvGG~~~----~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--------~~~e~ 245 (559)
+|+|||+||.+. .++|+| |.++ .|....++...+ +.++.+..+|+||++|| +++++
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~lp~~r--------~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~ 410 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGES---KWREEPPLIFPR--------YNPCVVNVNNLIYVIGGISKNDELLKTVEC 410 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCC---ceeeCCCcCcCC--------ccceEEEECCEEEEECCcCCCCcccceEEE
Confidence 899999999863 468999 8876 587777765432 23445667999999998 35899
Q ss_pred eeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEec
Q 048136 246 LDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVT 325 (559)
Q Consensus 246 yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~ 325 (559)
|||.+++|. .+++||. ++.++++.. ++++||++||...... ....+.+++||+.
T Consensus 411 yd~~t~~W~-~~~~~p~-----~r~~~~~~~-----------~~~~iyv~GG~~~~~~---------~~~~~~v~~yd~~ 464 (534)
T PHA03098 411 FSLNTNKWS-KGSPLPI-----SHYGGCAIY-----------HDGKIYVIGGISYIDN---------IKVYNIVESYNPV 464 (534)
T ss_pred EeCCCCeee-ecCCCCc-----cccCceEEE-----------ECCEEEEECCccCCCC---------CcccceEEEecCC
Confidence 999999999 5888874 223333322 4899999999753110 0123568999998
Q ss_pred CCCCceeee-cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCc
Q 048136 326 SPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPR 399 (559)
Q Consensus 326 ~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R 399 (559)
. ++|+.. +|+.+|..+.+ +..+|+|||+||.... ....++++|||+++ +|+.+..++.-.
T Consensus 465 ~--~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~~~---~W~~~~~~p~~~ 525 (534)
T PHA03098 465 T--NKWTELSSLNFPRINASL-CIFNNKIYVVGGDKYE--------YYINEIEVYDDKTN---TWTLFCKFPKVI 525 (534)
T ss_pred C--CceeeCCCCCcccccceE-EEECCEEEEEcCCcCC--------cccceeEEEeCCCC---EEEecCCCcccc
Confidence 5 899998 89999998865 4559999999998631 11347899999999 999987765433
No 16
>PLN02153 epithiospecifier protein
Probab=99.95 E-value=3.2e-26 Score=239.28 Aligned_cols=288 Identities=16% Similarity=0.163 Sum_probs=190.1
Q ss_pred CCCCcEEecCC----CCCcceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCC
Q 048136 33 YFLGKWELLPN----NPGISAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVN 108 (559)
Q Consensus 33 ~~~g~W~~~~~----~~~~~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~ 108 (559)
+..++|+.+.. ++..|.-|++++ .+++||++||.+.. +. . ......+||+.
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~-~~~~iyv~GG~~~~----------~~-~-------------~~~~~~~yd~~ 58 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAV-VGDKLYSFGGELKP----------NE-H-------------IDKDLYVFDFN 58 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEE-ECCEEEEECCccCC----------CC-c-------------eeCcEEEEECC
Confidence 46789999865 344566788888 79999999996411 00 0 01237899999
Q ss_pred CCCEEeCccCCC-c--cc-ccCeecCCCcEEEEcCCCCC--CCeEEEEeCCCCCCeecCCCcc-----ccccccceEEEc
Q 048136 109 TLQVTPLKVITD-T--WC-SSGGLDVNGNLISTGGFLGG--SRTTRYLWGCPTCDWTEYPTAL-----KDGRWYATQALL 177 (559)
Q Consensus 109 t~~w~~~~~~~~-~--~c-~~~~~l~dG~i~v~GG~~~g--~~~v~~ydp~~t~~W~~~~~~m-----~~~R~y~s~~~L 177 (559)
+++|+.++.+.. . .| ...++..+++||++||.... .+++++||+. +++|++++. | +.+|..|+++++
T Consensus 59 ~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~-~~~~~~p~~R~~~~~~~~ 136 (341)
T PLN02153 59 THTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTV-KNEWTFLTK-LDEEGGPEARTFHSMASD 136 (341)
T ss_pred CCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECC-CCEEEEecc-CCCCCCCCCceeeEEEEE
Confidence 999999876532 2 23 34466779999999997432 3689999999 999999875 6 678998988877
Q ss_pred cCCcEEEEcCCCC----------CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec------
Q 048136 178 ADGSFLIFGGRDS----------FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN------ 240 (559)
Q Consensus 178 ~dG~VyvvGG~~~----------~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg------ 240 (559)
+++|||+||.+. .++|+| |+++ .|..+.++... ...+..+ .+++.+|+||++||
T Consensus 137 -~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~---~W~~l~~~~~~----~~~r~~~-~~~~~~~~iyv~GG~~~~~~ 207 (341)
T PLN02153 137 -ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG---KWVQLPDPGEN----FEKRGGA-GFAVVQGKIWVVYGFATSIL 207 (341)
T ss_pred -CCEEEEECCccCCCccCCCcccceEEEEECCCC---eEeeCCCCCCC----CCCCCcc-eEEEECCeEEEEeccccccc
Confidence 899999999752 257889 8876 47654443210 0112333 34567999999976
Q ss_pred ---------CcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccc
Q 048136 241 ---------NRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKR 311 (559)
Q Consensus 241 ---------~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 311 (559)
+++++||+.+++|+ .++.+.. ...+|.++++++ .+++||++||.....-. . ...
T Consensus 208 ~gG~~~~~~~~v~~yd~~~~~W~-~~~~~g~--~P~~r~~~~~~~-----------~~~~iyv~GG~~~~~~~-~--~~~ 270 (341)
T PLN02153 208 PGGKSDYESNAVQFFDPASGKWT-EVETTGA--KPSARSVFAHAV-----------VGKYIIIFGGEVWPDLK-G--HLG 270 (341)
T ss_pred cCCccceecCceEEEEcCCCcEE-eccccCC--CCCCcceeeeEE-----------ECCEEEEECcccCCccc-c--ccc
Confidence 25789999999999 4654211 112333444332 48999999996311000 0 000
Q ss_pred cccccCceEEEEecCCCCceeee------cCCCCcccccEEEeeC-CeEEEEcCcCCCCCCccCCCCCCcccEEEeCC
Q 048136 312 LVPALDDCARMVVTSPDPVWTTE------KMPTPRVMSDGVLLPT-GDVLLINGAELGSAGWKDADKPCFKPLLYKPS 382 (559)
Q Consensus 312 ~~~a~~s~~~~d~~~~~~~W~~~------~M~~~R~~~~av~Lpd-G~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~ 382 (559)
..-.++++++||+.. ++|+.. +||.+|..++++.+.+ ++||++||.... .+.+.++.+|+..
T Consensus 271 ~~~~~n~v~~~d~~~--~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~-------~~~~~~~~~~~~~ 339 (341)
T PLN02153 271 PGTLSNEGYALDTET--LVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT-------NERTDDLYFYAVN 339 (341)
T ss_pred cccccccEEEEEcCc--cEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC-------CccccceEEEecc
Confidence 001246789999975 899964 4565565443344433 489999998632 1234467788754
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=9.2e-27 Score=253.66 Aligned_cols=204 Identities=15% Similarity=0.229 Sum_probs=162.2
Q ss_pred CCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCCCEEeCccCCCcccccCeecCCCcEEE
Q 048136 57 NVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLIS 136 (559)
Q Consensus 57 ~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v 136 (559)
.+++||++||.+.. . ....+.+|||.+++|.+++.++..++..+++..||+||+
T Consensus 270 ~~~~lyviGG~~~~----------~----------------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYv 323 (480)
T PHA02790 270 VGEVVYLIGGWMNN----------E----------------IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYV 323 (480)
T ss_pred ECCEEEEEcCCCCC----------C----------------cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEE
Confidence 58899999996410 0 013378999999999999999888877777888999999
Q ss_pred EcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcEEEEcCCCC--CceeEE-cCCCCCCCcceeccccc
Q 048136 137 TGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGGRDS--FSYEYI-PAERTENAYSIPFQFLR 213 (559)
Q Consensus 137 ~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~--~s~E~y-P~~~~~~~w~~~~p~l~ 213 (559)
+||.. +.+++++|||. +++|..+++ |+.+|..++++++ +|+|||+||.+. .++|+| |.++ .|....||..
T Consensus 324 iGG~~-~~~sve~ydp~-~n~W~~~~~-l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~---~W~~~~~m~~ 396 (480)
T PHA02790 324 VGGLP-NPTSVERWFHG-DAAWVNMPS-LLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHD---QWQFGPSTYY 396 (480)
T ss_pred ECCcC-CCCceEEEECC-CCeEEECCC-CCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCC---EEEeCCCCCC
Confidence 99974 44789999999 999999986 9999999999888 899999999764 468999 9886 5888777765
Q ss_pred cccccccCCccceEEEeeCCcEEEEecCcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEE
Q 048136 214 DTYDVLENNLYPFVYLVPDGNLYIFANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVL 293 (559)
Q Consensus 214 ~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~ 293 (559)
.+ .++ ..++.+|+||++||. +|+|||++|+|+ .+++||. ||.+.++.+ .+++||
T Consensus 397 ~r-------~~~-~~~~~~~~IYv~GG~-~e~ydp~~~~W~-~~~~m~~-----~r~~~~~~v-----------~~~~IY 450 (480)
T PHA02790 397 PH-------YKS-CALVFGRRLFLVGRN-AEFYCESSNTWT-LIDDPIY-----PRDNPELII-----------VDNKLL 450 (480)
T ss_pred cc-------ccc-eEEEECCEEEEECCc-eEEecCCCCcEe-EcCCCCC-----CccccEEEE-----------ECCEEE
Confidence 43 333 445679999999985 799999999999 6888874 333333322 489999
Q ss_pred EEcCCCCccccccccccccccccCceEEEEecCCCCceee
Q 048136 294 ICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTT 333 (559)
Q Consensus 294 v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~ 333 (559)
++||.+.+. .++++|+|||.. ++|+.
T Consensus 451 viGG~~~~~------------~~~~ve~Yd~~~--~~W~~ 476 (480)
T PHA02790 451 LIGGFYRGS------------YIDTIEVYNNRT--YSWNI 476 (480)
T ss_pred EECCcCCCc------------ccceEEEEECCC--CeEEe
Confidence 999986321 246899999986 89985
No 18
>PLN02193 nitrile-specifier protein
Probab=99.95 E-value=2.9e-25 Score=241.37 Aligned_cols=276 Identities=12% Similarity=0.144 Sum_probs=189.6
Q ss_pred EEEeCCC----CCEEeCccC---CCcccccCeecCCCcEEEEcCCCCC----CCeEEEEeCCCCCCeecCCC--cccc-c
Q 048136 103 VFYNVNT----LQVTPLKVI---TDTWCSSGGLDVNGNLISTGGFLGG----SRTTRYLWGCPTCDWTEYPT--ALKD-G 168 (559)
Q Consensus 103 ~~yDp~t----~~w~~~~~~---~~~~c~~~~~l~dG~i~v~GG~~~g----~~~v~~ydp~~t~~W~~~~~--~m~~-~ 168 (559)
.++||.+ ++|..+..+ +..++.++++..+++||++||.... .+++++||+. +++|+.++. .++. .
T Consensus 140 y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~-~~~W~~~~~~g~~P~~~ 218 (470)
T PLN02193 140 YISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLE-TRTWSISPATGDVPHLS 218 (470)
T ss_pred EEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECC-CCEEEeCCCCCCCCCCc
Confidence 4447655 799988763 5568877888889999999997421 2569999999 999998753 1233 2
Q ss_pred cccceEEEccCCcEEEEcCCCC----CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC--
Q 048136 169 RWYATQALLADGSFLIFGGRDS----FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN-- 241 (559)
Q Consensus 169 R~y~s~~~L~dG~VyvvGG~~~----~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~-- 241 (559)
|..++++++ +++|||+||.+. ..+++| |.++ .|..+.++... ...+.+ +.+++.+++||++||.
T Consensus 219 ~~~~~~v~~-~~~lYvfGG~~~~~~~ndv~~yD~~t~---~W~~l~~~~~~----P~~R~~-h~~~~~~~~iYv~GG~~~ 289 (470)
T PLN02193 219 CLGVRMVSI-GSTLYVFGGRDASRQYNGFYSFDTTTN---EWKLLTPVEEG----PTPRSF-HSMAADEENVYVFGGVSA 289 (470)
T ss_pred ccceEEEEE-CCEEEEECCCCCCCCCccEEEEECCCC---EEEEcCcCCCC----CCCccc-eEEEEECCEEEEECCCCC
Confidence 446677777 899999999764 457888 8876 58776665210 011233 4455679999999983
Q ss_pred -----cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCcccccccccccccccc
Q 048136 242 -----RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPAL 316 (559)
Q Consensus 242 -----~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~ 316 (559)
++++||+.+++|+ .+++ |. .+..+|.++++.+ ++++||++||.+. . ..
T Consensus 290 ~~~~~~~~~yd~~t~~W~-~~~~-~~-~~~~~R~~~~~~~-----------~~gkiyviGG~~g-~------------~~ 342 (470)
T PLN02193 290 TARLKTLDSYNIVDKKWF-HCST-PG-DSFSIRGGAGLEV-----------VQGKVWVVYGFNG-C------------EV 342 (470)
T ss_pred CCCcceEEEEECCCCEEE-eCCC-CC-CCCCCCCCcEEEE-----------ECCcEEEEECCCC-C------------cc
Confidence 4789999999999 4654 21 1223444444332 4899999999752 1 24
Q ss_pred CceEEEEecCCCCceeee-cC---CCCcccccEEEeeCCeEEEEcCcCCCC-CCccCCCCCCcccEEEeCCCCCCCeEEe
Q 048136 317 DDCARMVVTSPDPVWTTE-KM---PTPRVMSDGVLLPTGDVLLINGAELGS-AGWKDADKPCFKPLLYKPSKPPGSRFTE 391 (559)
Q Consensus 317 ~s~~~~d~~~~~~~W~~~-~M---~~~R~~~~av~LpdG~V~vvGG~~~g~-~g~~~~~~~~~~~e~YDP~t~~g~~Wt~ 391 (559)
+++++||+.. ++|+.. .| |.+|..+++ +..+++|||+||..... ...........++++|||+++ +|+.
T Consensus 343 ~dv~~yD~~t--~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~---~W~~ 416 (470)
T PLN02193 343 DDVHYYDPVQ--DKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL---QWER 416 (470)
T ss_pred CceEEEECCC--CEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCcC---EEEE
Confidence 7789999985 899986 44 889999865 55699999999975210 000000111236899999999 9998
Q ss_pred cCCC------CCCccceeeeE--ECCCCceEEeCCCCC
Q 048136 392 LAPS------DIPRMYHSVAN--LLPDGRVFVGGSNDN 421 (559)
Q Consensus 392 ~~~~------~~~R~yhs~a~--llpdG~Vlv~GG~~~ 421 (559)
+..+ +.+|..|+.+. +..+.++++.||...
T Consensus 417 ~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~ 454 (470)
T PLN02193 417 LDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAP 454 (470)
T ss_pred cccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCC
Confidence 7643 57888876433 322334999999753
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.94 E-value=2.7e-25 Score=230.57 Aligned_cols=267 Identities=13% Similarity=0.086 Sum_probs=178.4
Q ss_pred CcceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEE-eCCCC-CEEeCccCCCccc
Q 048136 46 GISAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFY-NVNTL-QVTPLKVITDTWC 123 (559)
Q Consensus 46 ~~~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y-Dp~t~-~w~~~~~~~~~~c 123 (559)
++.++-+++ .++++|++||.+... ..+.+ .|. ..+...+.+| |+..+ +|+.++.++..++
T Consensus 3 ~~~g~~~~~--~~~~l~v~GG~~~~~--~~~~~-~g~-------------~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~ 64 (323)
T TIGR03548 3 GVAGCYAGI--IGDYILVAGGCNFPE--DPLAE-GGK-------------KKNYKGIYIAKDENSNLKWVKDGQLPYEAA 64 (323)
T ss_pred ceeeEeeeE--ECCEEEEeeccCCCC--Cchhh-CCc-------------EEeeeeeEEEecCCCceeEEEcccCCcccc
Confidence 455555566 489999999975211 01111 010 0122223444 34433 7999998887776
Q ss_pred ccCeecCCCcEEEEcCCCCC--CCeEEEEeCCCCCCe----ecCCCccccccccceEEEccCCcEEEEcCCCC----Cce
Q 048136 124 SSGGLDVNGNLISTGGFLGG--SRTTRYLWGCPTCDW----TEYPTALKDGRWYATQALLADGSFLIFGGRDS----FSY 193 (559)
Q Consensus 124 ~~~~~l~dG~i~v~GG~~~g--~~~v~~ydp~~t~~W----~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~----~s~ 193 (559)
.++++..+++||++||.... .+++++||+. +++| ..+++ |+.+|..++++++ +++|||+||... .++
T Consensus 65 ~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~-~~~w~~~~~~~~~-lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v 141 (323)
T TIGR03548 65 YGASVSVENGIYYIGGSNSSERFSSVYRITLD-ESKEELICETIGN-LPFTFENGSACYK-DGTLYVGGGNRNGKPSNKS 141 (323)
T ss_pred ceEEEEECCEEEEEcCCCCCCCceeEEEEEEc-CCceeeeeeEcCC-CCcCccCceEEEE-CCEEEEEeCcCCCccCceE
Confidence 66667779999999997432 4689999998 8887 67775 9999998988887 899999999732 468
Q ss_pred eEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC------cEEEeeCCCCeEEEECCCCCCCCCc
Q 048136 194 EYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN------RSILLDPRANYVLREYPPLPGGARN 266 (559)
Q Consensus 194 E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~------~~e~yDp~t~~W~~~~p~mp~~~~~ 266 (559)
++| |.++ .|....++.... +.. ++++..+++||++||. ++++|||++++|+ .+++|+.....
T Consensus 142 ~~yd~~~~---~W~~~~~~p~~~------r~~-~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~p 210 (323)
T TIGR03548 142 YLFNLETQ---EWFELPDFPGEP------RVQ-PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ-KVADPTTDSEP 210 (323)
T ss_pred EEEcCCCC---CeeECCCCCCCC------CCc-ceEEEECCEEEEEcCCCCccccceEEEecCCCeeE-ECCCCCCCCCc
Confidence 899 8876 587766664321 223 3445679999999984 4689999999999 58877532111
Q ss_pred ccCCC-ceeecccccccccccccCcEEEEEcCCCCcccccccccccc---------------------cc-ccCceEEEE
Q 048136 267 YPSTS-TSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRL---------------------VP-ALDDCARMV 323 (559)
Q Consensus 267 ~p~~g-~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~---------------------~~-a~~s~~~~d 323 (559)
.++.+ +++++ .+++||++||.+...+... ...+ .+ -.+++++||
T Consensus 211 ~~~~~~~~~~~-----------~~~~iyv~GG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 277 (323)
T TIGR03548 211 ISLLGAASIKI-----------NESLLLCIGGFNKDVYNDA--VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYN 277 (323)
T ss_pred eeccceeEEEE-----------CCCEEEEECCcCHHHHHHH--HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEE
Confidence 11112 22221 3789999999863211000 0000 00 136799999
Q ss_pred ecCCCCceeee-cCC-CCcccccEEEeeCCeEEEEcCcC
Q 048136 324 VTSPDPVWTTE-KMP-TPRVMSDGVLLPTGDVLLINGAE 360 (559)
Q Consensus 324 ~~~~~~~W~~~-~M~-~~R~~~~av~LpdG~V~vvGG~~ 360 (559)
+.. ++|+.. +|| .+|..+.+ +..+++||++||..
T Consensus 278 ~~~--~~W~~~~~~p~~~r~~~~~-~~~~~~iyv~GG~~ 313 (323)
T TIGR03548 278 VRT--GKWKSIGNSPFFARCGAAL-LLTGNNIFSINGEL 313 (323)
T ss_pred CCC--CeeeEcccccccccCchhe-EEECCEEEEEeccc
Confidence 986 899987 787 57888864 55699999999975
No 20
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=8.3e-25 Score=242.08 Aligned_cols=249 Identities=14% Similarity=0.174 Sum_probs=180.8
Q ss_pred cEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcEEEEcCCCC-----CceeEE-cCCCCCCCcc
Q 048136 133 NLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGGRDS-----FSYEYI-PAERTENAYS 206 (559)
Q Consensus 133 ~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~-----~s~E~y-P~~~~~~~w~ 206 (559)
.+++.||..+....+..|++. .++|..+++ ++. +..++++++ +++|||+||.+. ..+.+| |.++ .|.
T Consensus 252 ~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~---~W~ 324 (534)
T PHA03098 252 IIYIHITMSIFTYNYITNYSP-LSEINTIID-IHY-VYCFGSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTK---SWN 324 (534)
T ss_pred ceEeecccchhhceeeecchh-hhhcccccC-ccc-cccceEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCC---eee
Confidence 355555543222455678888 889988864 543 334566666 899999999764 256778 8776 476
Q ss_pred eeccccccccccccCCccceEEEeeCCcEEEEecC-------cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccc
Q 048136 207 IPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN-------RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLK 279 (559)
Q Consensus 207 ~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~-------~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~ 279 (559)
...++...+ .+ +..+..+|+||++||. ++++||+.+++|. .+++||. |+.++++..
T Consensus 325 ~~~~~~~~R-------~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~lp~-----~r~~~~~~~--- 387 (534)
T PHA03098 325 KVPELIYPR-------KN-PGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-EEPPLIF-----PRYNPCVVN--- 387 (534)
T ss_pred ECCCCCccc-------cc-ceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-eCCCcCc-----CCccceEEE---
Confidence 665554332 23 3455679999999994 5899999999999 6888884 333444332
Q ss_pred cccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee-cCCCCcccccEEEeeCCeEEEEcC
Q 048136 280 LYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLING 358 (559)
Q Consensus 280 ~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG 358 (559)
.+++||++||..... ..++++++||+.. ++|+.. +||.+|..+++ +..+++|||+||
T Consensus 388 --------~~~~iYv~GG~~~~~-----------~~~~~v~~yd~~t--~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG 445 (534)
T PHA03098 388 --------VNNLIYVIGGISKND-----------ELLKTVECFSLNT--NKWSKGSPLPISHYGGCA-IYHDGKIYVIGG 445 (534)
T ss_pred --------ECCEEEEECCcCCCC-----------cccceEEEEeCCC--CeeeecCCCCccccCceE-EEECCEEEEECC
Confidence 489999999975321 2357899999985 899998 99999999864 556999999999
Q ss_pred cCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceEEeCCCCCCCCcccCCCCCcceeeE
Q 048136 359 AELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDNDGYQEWAKFPTELRLEK 438 (559)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~~~~~~~~~~~~~~~~E~ 438 (559)
..... .......+++|||+++ +|+.+++|+.+|..|+.+++ |++|||+||..... + ...+|+
T Consensus 446 ~~~~~-----~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~------~--~~~v~~ 507 (534)
T PHA03098 446 ISYID-----NIKVYNIVESYNPVTN---KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEY------Y--INEIEV 507 (534)
T ss_pred ccCCC-----CCcccceEEEecCCCC---ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCc------c--cceeEE
Confidence 75211 1111235899999999 99999999999999987766 99999999975432 1 347999
Q ss_pred EcCCCCC
Q 048136 439 FSPPYLA 445 (559)
Q Consensus 439 y~Ppyl~ 445 (559)
|+|..-.
T Consensus 508 yd~~~~~ 514 (534)
T PHA03098 508 YDDKTNT 514 (534)
T ss_pred EeCCCCE
Confidence 9998754
No 21
>PLN02193 nitrile-specifier protein
Probab=99.93 E-value=1.1e-23 Score=229.00 Aligned_cols=287 Identities=14% Similarity=0.153 Sum_probs=189.6
Q ss_pred CCcEEecCC---CCCcceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCCC
Q 048136 35 LGKWELLPN---NPGISAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTLQ 111 (559)
Q Consensus 35 ~g~W~~~~~---~~~~~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~~ 111 (559)
.++|..+.+ ++..|..|++++ .+++||++||.+.. +. . ......+||+.+++
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~-~~~~iyv~GG~~~~----------~~-~-------------~~~~v~~yD~~~~~ 204 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQ-VGNKIYSFGGEFTP----------NQ-P-------------IDKHLYVFDLETRT 204 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEE-ECCEEEEECCcCCC----------CC-C-------------eeCcEEEEECCCCE
Confidence 589998875 344677899988 79999999996410 00 0 01237899999999
Q ss_pred EEeCccCC---Cc-ccccCeecCCCcEEEEcCCCCC--CCeEEEEeCCCCCCeecCCCcc---ccccccceEEEccCCcE
Q 048136 112 VTPLKVIT---DT-WCSSGGLDVNGNLISTGGFLGG--SRTTRYLWGCPTCDWTEYPTAL---KDGRWYATQALLADGSF 182 (559)
Q Consensus 112 w~~~~~~~---~~-~c~~~~~l~dG~i~v~GG~~~g--~~~v~~ydp~~t~~W~~~~~~m---~~~R~y~s~~~L~dG~V 182 (559)
|+.++.+. .. ++...++..+++|||+||.... .+++++||+. +++|+++++ | +.+|.+|+++++ +++|
T Consensus 205 W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~-t~~W~~l~~-~~~~P~~R~~h~~~~~-~~~i 281 (470)
T PLN02193 205 WSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT-TNEWKLLTP-VEEGPTPRSFHSMAAD-EENV 281 (470)
T ss_pred EEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECC-CCEEEEcCc-CCCCCCCccceEEEEE-CCEE
Confidence 99876532 22 3344566789999999997422 4789999999 999999875 6 788999988877 8999
Q ss_pred EEEcCCCC----CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec------CcEEEeeCCCC
Q 048136 183 LIFGGRDS----FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN------NRSILLDPRAN 251 (559)
Q Consensus 183 yvvGG~~~----~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg------~~~e~yDp~t~ 251 (559)
||+||.+. ..+++| |.++ .|....+. ... ...+..+ ..++.+|+||++|| +++++||+.++
T Consensus 282 Yv~GG~~~~~~~~~~~~yd~~t~---~W~~~~~~-~~~---~~~R~~~-~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 282 YVFGGVSATARLKTLDSYNIVDK---KWFHCSTP-GDS---FSIRGGA-GLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEECCCCCCCCcceEEEEECCCC---EEEeCCCC-CCC---CCCCCCc-EEEEECCcEEEEECCCCCccCceEEEECCCC
Confidence 99999764 357889 8876 47654321 000 0112233 44566999999998 46899999999
Q ss_pred eEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCce
Q 048136 252 YVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVW 331 (559)
Q Consensus 252 ~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W 331 (559)
+|+ .++++.. ...+|.+++++. ++++|||+||......... ......++++++||+.. ++|
T Consensus 354 ~W~-~~~~~g~--~P~~R~~~~~~~-----------~~~~iyv~GG~~~~~~~~~---~~~~~~~ndv~~~D~~t--~~W 414 (470)
T PLN02193 354 KWT-QVETFGV--RPSERSVFASAA-----------VGKHIVIFGGEIAMDPLAH---VGPGQLTDGTFALDTET--LQW 414 (470)
T ss_pred EEE-EeccCCC--CCCCcceeEEEE-----------ECCEEEEECCccCCccccc---cCccceeccEEEEEcCc--CEE
Confidence 999 4665421 112343443322 4889999999752110000 00001346789999985 899
Q ss_pred eee-cC------CCCcccccEE-EeeCC--eEEEEcCcCCCCCCccCCCCCCcccEEEeCCC
Q 048136 332 TTE-KM------PTPRVMSDGV-LLPTG--DVLLINGAELGSAGWKDADKPCFKPLLYKPSK 383 (559)
Q Consensus 332 ~~~-~M------~~~R~~~~av-~LpdG--~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t 383 (559)
+.. .+ |.+|..+.++ ...++ .++++||...+ ++......+|+.++
T Consensus 415 ~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~-------~~~~~D~~~~~~~~ 469 (470)
T PLN02193 415 ERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT-------NDRFDDLFFYGIDS 469 (470)
T ss_pred EEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc-------cccccceEEEecCC
Confidence 975 33 5778766432 22343 39999998631 12233566666543
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.75 E-value=7.4e-17 Score=154.75 Aligned_cols=264 Identities=17% Similarity=0.200 Sum_probs=175.4
Q ss_pred cEEecCCCCCcceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCCCEEeCc
Q 048136 37 KWELLPNNPGISAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTLQVTPLK 116 (559)
Q Consensus 37 ~W~~~~~~~~~~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~~~ 116 (559)
+|+.--.--+.+-.|+++. ...+||-|||+-.|... +. .+. . -+..++..+-.|+.++
T Consensus 3 ~WTVHLeGGPrRVNHAava-VG~riYSFGGYCsGedy----------~~-~~p------i----DVH~lNa~~~RWtk~p 60 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVA-VGSRIYSFGGYCSGEDY----------DA-KDP------I----DVHVLNAENYRWTKMP 60 (392)
T ss_pred eEEEEecCCcccccceeee-ecceEEecCCccccccc----------cc-CCc------c----eeEEeeccceeEEecC
Confidence 5775333334666799998 78899999997533211 10 111 1 1567888899999887
Q ss_pred cC-------------CCcccccCeecCCCcEEEEcCCCC--C-CCeEEEEeCCCCCCeecCC--CccccccccceEEEcc
Q 048136 117 VI-------------TDTWCSSGGLDVNGNLISTGGFLG--G-SRTTRYLWGCPTCDWTEYP--TALKDGRWYATQALLA 178 (559)
Q Consensus 117 ~~-------------~~~~c~~~~~l~dG~i~v~GG~~~--g-~~~v~~ydp~~t~~W~~~~--~~m~~~R~y~s~~~L~ 178 (559)
+. +-.+....++..++++|+-||..| | .+....|||. ++.|.+.. .-++-.|-.|++|++
T Consensus 61 p~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~-t~~W~~p~v~G~vPgaRDGHsAcV~- 138 (392)
T KOG4693|consen 61 PGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPE-TNVWKKPEVEGFVPGARDGHSACVW- 138 (392)
T ss_pred cccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccc-cccccccceeeecCCccCCceeeEE-
Confidence 52 123566678888999999999865 2 3678899999 99998642 236788999999999
Q ss_pred CCcEEEEcCCCC----CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC------------
Q 048136 179 DGSFLIFGGRDS----FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN------------ 241 (559)
Q Consensus 179 dG~VyvvGG~~~----~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~------------ 241 (559)
++.+||.||... .+-|.+ -...+ -.|..+...- +...++-+ +...+.+|++|+|||+
T Consensus 139 gn~MyiFGGye~~a~~FS~d~h~ld~~T-mtWr~~~Tkg----~PprwRDF-H~a~~~~~~MYiFGGR~D~~gpfHs~~e 212 (392)
T KOG4693|consen 139 GNQMYIFGGYEEDAQRFSQDTHVLDFAT-MTWREMHTKG----DPPRWRDF-HTASVIDGMMYIFGGRSDESGPFHSIHE 212 (392)
T ss_pred CcEEEEecChHHHHHhhhccceeEeccc-eeeeehhccC----CCchhhhh-hhhhhccceEEEeccccccCCCccchhh
Confidence 799999999753 233333 11111 1354322110 10112233 3456679999999995
Q ss_pred ----cEEEeeCCCCeEEEECCC---CCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCcccccccccccccc
Q 048136 242 ----RSILLDPRANYVLREYPP---LPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVP 314 (559)
Q Consensus 242 ----~~e~yDp~t~~W~~~~p~---mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~ 314 (559)
....+|.+|+.|.+ .|+ .|+++|+ .++ .+ +++|+|++||.+.. . ..
T Consensus 213 ~Yc~~i~~ld~~T~aW~r-~p~~~~~P~GRRS----HS~-fv-----------Yng~~Y~FGGYng~-l---------n~ 265 (392)
T KOG4693|consen 213 QYCDTIMALDLATGAWTR-TPENTMKPGGRRS----HST-FV-----------YNGKMYMFGGYNGT-L---------NV 265 (392)
T ss_pred hhcceeEEEecccccccc-CCCCCcCCCcccc----cce-EE-----------EcceEEEecccchh-h---------hh
Confidence 24578999999995 443 4444443 232 22 69999999998732 1 12
Q ss_pred ccCceEEEEecCCCCceeee----cCCCCcccccEEEeeCCeEEEEcCcC
Q 048136 315 ALDDCARMVVTSPDPVWTTE----KMPTPRVMSDGVLLPTGDVLLINGAE 360 (559)
Q Consensus 315 a~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~av~LpdG~V~vvGG~~ 360 (559)
.-+...++||.. ..|... .-|.+|.-.++++ .++|||++||..
T Consensus 266 HfndLy~FdP~t--~~W~~I~~~Gk~P~aRRRqC~~v-~g~kv~LFGGTs 312 (392)
T KOG4693|consen 266 HFNDLYCFDPKT--SMWSVISVRGKYPSARRRQCSVV-SGGKVYLFGGTS 312 (392)
T ss_pred hhcceeeccccc--chheeeeccCCCCCcccceeEEE-ECCEEEEecCCC
Confidence 336677888875 789974 5678888886554 599999999975
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.73 E-value=6.2e-16 Score=148.45 Aligned_cols=254 Identities=17% Similarity=0.282 Sum_probs=168.0
Q ss_pred ccccCeecCCCcEEEEcCCCCCC-------CeEEEEeCCCCCCeecCCCc------------cccccccceEEEccCCcE
Q 048136 122 WCSSGGLDVNGNLISTGGFLGGS-------RTTRYLWGCPTCDWTEYPTA------------LKDGRWYATQALLADGSF 182 (559)
Q Consensus 122 ~c~~~~~l~dG~i~v~GG~~~g~-------~~v~~ydp~~t~~W~~~~~~------------m~~~R~y~s~~~L~dG~V 182 (559)
+-..+++....+||.+||+..|. -++.+++.. +-.|+.+++. .+..|+.|+++.. ++++
T Consensus 14 RVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~-~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y-~d~~ 91 (392)
T KOG4693|consen 14 RVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAE-NYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY-QDKA 91 (392)
T ss_pred cccceeeeecceEEecCCcccccccccCCcceeEEeecc-ceeEEecCcccccccccCCCCccchhhcCceEEEE-cceE
Confidence 33445556688999999986441 257788888 8899988641 2456988988877 8999
Q ss_pred EEEcCCCC-----CceeEE-cCCCCCCCcce--eccccccccccccCCccceEEEeeCCcEEEEec---------CcEEE
Q 048136 183 LIFGGRDS-----FSYEYI-PAERTENAYSI--PFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN---------NRSIL 245 (559)
Q Consensus 183 yvvGG~~~-----~s~E~y-P~~~~~~~w~~--~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg---------~~~e~ 245 (559)
||-||++. +..-.| |++++ |.. +.-++...+| .+ .+++.+..+|+||| +++..
T Consensus 92 yvWGGRND~egaCN~Ly~fDp~t~~---W~~p~v~G~vPgaRD------GH-sAcV~gn~MyiFGGye~~a~~FS~d~h~ 161 (392)
T KOG4693|consen 92 YVWGGRNDDEGACNLLYEFDPETNV---WKKPEVEGFVPGARD------GH-SACVWGNQMYIFGGYEEDAQRFSQDTHV 161 (392)
T ss_pred EEEcCccCcccccceeeeecccccc---ccccceeeecCCccC------Cc-eeeEECcEEEEecChHHHHHhhhcccee
Confidence 99999975 223345 88874 543 2222333222 33 44567999999999 35678
Q ss_pred eeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCcc--ccccccccccccccCceEEEE
Q 048136 246 LDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEA--FYFGEVEKRLVPALDDCARMV 323 (559)
Q Consensus 246 yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~--~~~~~~~~~~~~a~~s~~~~d 323 (559)
+|..|-+|.. +-.. +.+..|.-..++++ +++..||+||..... |.. +.++| -++...+|
T Consensus 162 ld~~TmtWr~-~~Tk-g~PprwRDFH~a~~------------~~~~MYiFGGR~D~~gpfHs--~~e~Y---c~~i~~ld 222 (392)
T KOG4693|consen 162 LDFATMTWRE-MHTK-GDPPRWRDFHTASV------------IDGMMYIFGGRSDESGPFHS--IHEQY---CDTIMALD 222 (392)
T ss_pred Eeccceeeee-hhcc-CCCchhhhhhhhhh------------ccceEEEeccccccCCCccc--hhhhh---cceeEEEe
Confidence 8999999983 4221 11223333355555 379999999986421 110 01111 13334456
Q ss_pred ecCCCCceeee----cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecC---CCC
Q 048136 324 VTSPDPVWTTE----KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELA---PSD 396 (559)
Q Consensus 324 ~~~~~~~W~~~----~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~---~~~ 396 (559)
+.+ ..|... -.|.+|..|+ +-+-||++|++||.. |.- +.......+|||.+. .|+.+. .-+
T Consensus 223 ~~T--~aW~r~p~~~~~P~GRRSHS-~fvYng~~Y~FGGYn-g~l-----n~HfndLy~FdP~t~---~W~~I~~~Gk~P 290 (392)
T KOG4693|consen 223 LAT--GAWTRTPENTMKPGGRRSHS-TFVYNGKMYMFGGYN-GTL-----NVHFNDLYCFDPKTS---MWSVISVRGKYP 290 (392)
T ss_pred ccc--cccccCCCCCcCCCcccccc-eEEEcceEEEecccc-hhh-----hhhhcceeecccccc---hheeeeccCCCC
Confidence 654 789963 3588899996 455699999999986 321 112236789999999 999763 467
Q ss_pred CCccceeeeEECCCCceEEeCCCC
Q 048136 397 IPRMYHSVANLLPDGRVFVGGSND 420 (559)
Q Consensus 397 ~~R~yhs~a~llpdG~Vlv~GG~~ 420 (559)
.+|.-|++.+. ++||+.+||..
T Consensus 291 ~aRRRqC~~v~--g~kv~LFGGTs 312 (392)
T KOG4693|consen 291 SARRRQCSVVS--GGKVYLFGGTS 312 (392)
T ss_pred CcccceeEEEE--CCEEEEecCCC
Confidence 77887866555 99999999964
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.56 E-value=3.6e-13 Score=146.76 Aligned_cols=260 Identities=16% Similarity=0.152 Sum_probs=183.0
Q ss_pred CCcceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCCCEEeCccC---CCc
Q 048136 45 PGISAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTLQVTPLKVI---TDT 121 (559)
Q Consensus 45 ~~~~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~~~~~---~~~ 121 (559)
+..++.|++++ .++++|++||... +.+.. +. ...++|..+..|...... +..
T Consensus 58 p~~R~~hs~~~-~~~~~~vfGG~~~-----------~~~~~------------~~-dl~~~d~~~~~w~~~~~~g~~p~~ 112 (482)
T KOG0379|consen 58 PIPRAGHSAVL-IGNKLYVFGGYGS-----------GDRLT------------DL-DLYVLDLESQLWTKPAATGDEPSP 112 (482)
T ss_pred cchhhccceeE-ECCEEEEECCCCC-----------CCccc------------cc-eeEEeecCCcccccccccCCCCCc
Confidence 44577899998 7999999999641 11110 11 267889999999865432 223
Q ss_pred ccccCeecCCCcEEEEcCCCCC---CCeEEEEeCCCCCCeecCCC--ccccccccceEEEccCCcEEEEcCCCCCceeEE
Q 048136 122 WCSSGGLDVNGNLISTGGFLGG---SRTTRYLWGCPTCDWTEYPT--ALKDGRWYATQALLADGSFLIFGGRDSFSYEYI 196 (559)
Q Consensus 122 ~c~~~~~l~dG~i~v~GG~~~g---~~~v~~ydp~~t~~W~~~~~--~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y 196 (559)
+.....+..+.+||++||.... .+++.+||+. +++|+.+.. .++.+|++|++++. +.++||.||.+...
T Consensus 113 r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~-t~~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~---- 186 (482)
T KOG0379|consen 113 RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLS-TRTWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTG---- 186 (482)
T ss_pred ccceeEEEECCeEEEEccccCCCCChhheEeccCC-CCcEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcc----
Confidence 3344455668999999998532 3589999999 999998642 36889999999888 79999999964210
Q ss_pred cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecCcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeec
Q 048136 197 PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLL 276 (559)
Q Consensus 197 P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~l 276 (559)
..+ +++++||.++.+|.+ +.. .+ ...-||.+++..+
T Consensus 187 -------------~~~----------------------------ndl~i~d~~~~~W~~-~~~-~g-~~P~pR~gH~~~~ 222 (482)
T KOG0379|consen 187 -------------DSL----------------------------NDLHIYDLETSTWSE-LDT-QG-EAPSPRYGHAMVV 222 (482)
T ss_pred -------------cce----------------------------eeeeeecccccccee-ccc-CC-CCCCCCCCceEEE
Confidence 011 245689999999984 432 22 1223666776544
Q ss_pred ccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee----cCCCCcccccEEEeeCCe
Q 048136 277 PLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE----KMPTPRVMSDGVLLPTGD 352 (559)
Q Consensus 277 pl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~av~LpdG~ 352 (559)
++.+++++||...+. -.++++.++|+.. -+|... .+|.+|..|..+ ..+.+
T Consensus 223 -----------~~~~~~v~gG~~~~~-----------~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~-~~~~~ 277 (482)
T KOG0379|consen 223 -----------VGNKLLVFGGGDDGD-----------VYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLT-VSGDH 277 (482)
T ss_pred -----------ECCeEEEEeccccCC-----------ceecceEeeeccc--ceeeeccccCCCCCCcceeeeE-EECCE
Confidence 488999999976221 2357889999985 788852 689999999766 66889
Q ss_pred EEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCC----CCCCccceeeeEECCCCce
Q 048136 353 VLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAP----SDIPRMYHSVANLLPDGRV 413 (559)
Q Consensus 353 V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~----~~~~R~yhs~a~llpdG~V 413 (559)
++++||...+. ..+..+...||.++. .|+.+.. .+.+|.-|.....-..++.
T Consensus 278 ~~l~gG~~~~~------~~~l~~~~~l~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
T KOG0379|consen 278 LLLFGGGTDPK------QEPLGDLYGLDLETL---VWSKVESVGVVRPSPRLGHAAELIDELGKD 333 (482)
T ss_pred EEEEcCCcccc------ccccccccccccccc---ceeeeeccccccccccccccceeeccCCcc
Confidence 99999986421 014457888999988 8887543 3578888877766555554
No 25
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.42 E-value=1.1e-11 Score=135.17 Aligned_cols=211 Identities=17% Similarity=0.212 Sum_probs=145.1
Q ss_pred cccccccceEEEccCCcEEEEcCCCCC----ceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEe
Q 048136 165 LKDGRWYATQALLADGSFLIFGGRDSF----SYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFA 239 (559)
Q Consensus 165 m~~~R~y~s~~~L~dG~VyvvGG~~~~----s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~G 239 (559)
.+.+|+.|+++.. ++++||.||.... ..++| ...+. ..|...... .. .+...+-+..+..+.+||+||
T Consensus 57 ~p~~R~~hs~~~~-~~~~~vfGG~~~~~~~~~~dl~~~d~~~-~~w~~~~~~--g~---~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 57 GPIPRAGHSAVLI-GNKLYVFGGYGSGDRLTDLDLYVLDLES-QLWTKPAAT--GD---EPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred CcchhhccceeEE-CCEEEEECCCCCCCccccceeEEeecCC-ccccccccc--CC---CCCcccceeEEEECCeEEEEc
Confidence 5678999998887 8999999997541 11355 33221 124322111 10 122234445566789999999
Q ss_pred cC--------cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccc
Q 048136 240 NN--------RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKR 311 (559)
Q Consensus 240 g~--------~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 311 (559)
|. .+..||+.+++|.. +.+... .--+|.++++.+ ++.+|||+||.+...
T Consensus 130 G~~~~~~~~~~l~~~d~~t~~W~~-l~~~~~--~P~~r~~Hs~~~-----------~g~~l~vfGG~~~~~--------- 186 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTRTWSL-LSPTGD--PPPPRAGHSATV-----------VGTKLVVFGGIGGTG--------- 186 (482)
T ss_pred cccCCCCChhheEeccCCCCcEEE-ecCcCC--CCCCcccceEEE-----------ECCEEEEECCccCcc---------
Confidence 84 47899999999994 433221 112445665543 478999999986321
Q ss_pred cccccCceEEEEecCCCCceeee----cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCC
Q 048136 312 LVPALDDCARMVVTSPDPVWTTE----KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGS 387 (559)
Q Consensus 312 ~~~a~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~ 387 (559)
..++++++||+.+ .+|... .-|.||..|. +++.++++||+||...+. .....+.++|-.+-
T Consensus 187 --~~~ndl~i~d~~~--~~W~~~~~~g~~P~pR~gH~-~~~~~~~~~v~gG~~~~~-------~~l~D~~~ldl~~~--- 251 (482)
T KOG0379|consen 187 --DSLNDLHIYDLET--STWSELDTQGEAPSPRYGHA-MVVVGNKLLVFGGGDDGD-------VYLNDVHILDLSTW--- 251 (482)
T ss_pred --cceeeeeeecccc--ccceecccCCCCCCCCCCce-EEEECCeEEEEeccccCC-------ceecceEeeecccc---
Confidence 1468899999986 779973 6788999996 566699999999976221 22347899999998
Q ss_pred eEEec---CCCCCCccceeeeEECCCCceEEeCCCCCC
Q 048136 388 RFTEL---APSDIPRMYHSVANLLPDGRVFVGGSNDND 422 (559)
Q Consensus 388 ~Wt~~---~~~~~~R~yhs~a~llpdG~Vlv~GG~~~~ 422 (559)
+|..+ ...+.+|++|+.++. ..++++.||....
T Consensus 252 ~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 252 EWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP 287 (482)
T ss_pred eeeeccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence 99965 457899999987754 7778888887653
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.34 E-value=3.7e-11 Score=122.14 Aligned_cols=219 Identities=19% Similarity=0.281 Sum_probs=152.8
Q ss_pred CCcEEEEcCCC-CC-----CCeEEEEeCCCCCCeecCCC-ccccccccceEEEccCCcEEEEcCCCCCceeEEcCCCCCC
Q 048136 131 NGNLISTGGFL-GG-----SRTTRYLWGCPTCDWTEYPT-ALKDGRWYATQALLADGSFLIFGGRDSFSYEYIPAERTEN 203 (559)
Q Consensus 131 dG~i~v~GG~~-~g-----~~~v~~ydp~~t~~W~~~~~-~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~ 203 (559)
...|+++||.. +| .+..+.||.. +++|..+.. .-+.+|..|.+++.+.|.+++.||.-.. |..
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k-~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS-----Pnq---- 147 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTK-KNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS-----PNQ---- 147 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEecc-ccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC-----cch----
Confidence 34899999953 34 2577889999 999998742 2567899999999998999999995210 221
Q ss_pred CcceeccccccccccccCCccceEEEeeCCcEEEEecCcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccc
Q 048136 204 AYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRD 283 (559)
Q Consensus 204 ~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~ 283 (559)
. ..||. .+.|+||.++++|++ +. .+++ -.||+|+-.++
T Consensus 148 ---------~--------qF~HY--------------kD~W~fd~~trkweq-l~-~~g~--PS~RSGHRMva------- 185 (521)
T KOG1230|consen 148 ---------E--------QFHHY--------------KDLWLFDLKTRKWEQ-LE-FGGG--PSPRSGHRMVA------- 185 (521)
T ss_pred ---------h--------hhhhh--------------hheeeeeeccchhee-ec-cCCC--CCCCccceeEE-------
Confidence 0 12221 356899999999995 53 3332 24677876443
Q ss_pred cccccCcEEEEEcCCCCc--cccccccccccccccCceEEEEecCCCCceeee--c--CCCCcccccEEEeeCCeEEEEc
Q 048136 284 YYARVDAEVLICGGSVPE--AFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE--K--MPTPRVMSDGVLLPTGDVLLIN 357 (559)
Q Consensus 284 ~~~~~~gkI~v~GG~~~~--~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~--~--M~~~R~~~~av~LpdG~V~vvG 357 (559)
...+|+++||.... .| .-.+.++++|+.. =+|+.. + -|.+|+++++.+.|+|.|+|.|
T Consensus 186 ----wK~~lilFGGFhd~nr~y----------~YyNDvy~FdLdt--ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 186 ----WKRQLILFGGFHDSNRDY----------IYYNDVYAFDLDT--YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred ----eeeeEEEEcceecCCCce----------EEeeeeEEEeccc--eeeeeccCCCCCCCCCCcceEEecCCCcEEEEc
Confidence 58899999997421 11 2357889999985 789985 3 4899999999999999999999
Q ss_pred CcCCCCCCccCCCCC--CcccEEEeCCCCC--CCeEEecCC---CCCCccceeeeEECCCCceEEeCCC
Q 048136 358 GAELGSAGWKDADKP--CFKPLLYKPSKPP--GSRFTELAP---SDIPRMYHSVANLLPDGRVFVGGSN 419 (559)
Q Consensus 358 G~~~g~~g~~~~~~~--~~~~e~YDP~t~~--g~~Wt~~~~---~~~~R~yhs~a~llpdG~Vlv~GG~ 419 (559)
|...-..- .+.... .....+-+|+.+. -..|+.+.+ -|.||...|++ +.++++-|.+||-
T Consensus 250 GYsK~~~k-K~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~-va~n~kal~FGGV 316 (521)
T KOG1230|consen 250 GYSKQRVK-KDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA-VAKNHKALFFGGV 316 (521)
T ss_pred chhHhhhh-hhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE-EecCCceEEecce
Confidence 97631100 001111 1245667888732 247888865 47899998765 4589999999995
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.27 E-value=2.4e-10 Score=114.94 Aligned_cols=259 Identities=17% Similarity=0.231 Sum_probs=159.0
Q ss_pred CCCEEeCccCC-CcccccCeecCCCcEEEEcCCCCC-------CCeEEEEeCCCCCCeecCCCccccccccceEEEccCC
Q 048136 109 TLQVTPLKVIT-DTWCSSGGLDVNGNLISTGGFLGG-------SRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADG 180 (559)
Q Consensus 109 t~~w~~~~~~~-~~~c~~~~~l~dG~i~v~GG~~~g-------~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG 180 (559)
.+.|+.++..+ ..+-....+..+|+||++||.... .+++++|||. +|+|..+....+..--.++++.+.+.
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~-~nsW~kl~t~sP~gl~G~~~~~~~~~ 147 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPS-TNSWHKLDTRSPTGLVGASTFSLNGT 147 (381)
T ss_pred CCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCC-CChhheeccccccccccceeEecCCc
Confidence 46899998764 345556677889999999997421 2678999999 99999985423333446777788555
Q ss_pred cEEEEcCCCCCceeEE-c---CCCC-CCCcce-ecccc-ccccccccCCccceEEEeeCCcEEEEecCcEEEeeCCCCeE
Q 048136 181 SFLIFGGRDSFSYEYI-P---AERT-ENAYSI-PFQFL-RDTYDVLENNLYPFVYLVPDGNLYIFANNRSILLDPRANYV 253 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~y-P---~~~~-~~~w~~-~~p~l-~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~yDp~t~~W 253 (559)
+||+.||.+..-..-| - +.+. ...+.. +.... .+..| |.+ ++.+..|||+++.|
T Consensus 148 ~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d------y~~-------------n~ev~sy~p~~n~W 208 (381)
T COG3055 148 KIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED------YFF-------------NKEVLSYDPSTNQW 208 (381)
T ss_pred eEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH------hcc-------------cccccccccccchh
Confidence 9999999875211111 1 0100 000100 00000 00001 111 23456899999999
Q ss_pred EEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCcccccccccccccccc--CceEEEEecCCCCce
Q 048136 254 LREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPAL--DDCARMVVTSPDPVW 331 (559)
Q Consensus 254 ~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~--~s~~~~d~~~~~~~W 331 (559)
. .+-..|. ++++|++++. -+++|.++-|.-. |-+ ..+.+++....+-+|
T Consensus 209 ~-~~G~~pf----~~~aGsa~~~-----------~~n~~~lInGEiK-------------pGLRt~~~k~~~~~~~~~~w 259 (381)
T COG3055 209 R-NLGENPF----YGNAGSAVVI-----------KGNKLTLINGEIK-------------PGLRTAEVKQADFGGDNLKW 259 (381)
T ss_pred h-hcCcCcc----cCccCcceee-----------cCCeEEEEcceec-------------CCccccceeEEEeccCceee
Confidence 8 4544443 6778887764 3677888877532 223 344567777667789
Q ss_pred eee-cCCCCcccc-c-----EEEeeCCeEEEEcCcCCCCC------CccCCCCCC-----cccEEEeCCCCCCCeEEecC
Q 048136 332 TTE-KMPTPRVMS-D-----GVLLPTGDVLLINGAELGSA------GWKDADKPC-----FKPLLYKPSKPPGSRFTELA 393 (559)
Q Consensus 332 ~~~-~M~~~R~~~-~-----av~LpdG~V~vvGG~~~g~~------g~~~~~~~~-----~~~e~YDP~t~~g~~Wt~~~ 393 (559)
... ++|-+-... . .---.+|.++|.||+..-.+ |+-.+++.+ ..+.++| .+ .|+.+.
T Consensus 260 ~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g---~Wk~~G 334 (381)
T COG3055 260 LKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NG---SWKIVG 334 (381)
T ss_pred eeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CC---ceeeec
Confidence 987 665442221 0 11234889999999763111 111222211 1355556 77 999999
Q ss_pred CCCCCccceeeeEECCCCceEEeCCCCCCC
Q 048136 394 PSDIPRMYHSVANLLPDGRVFVGGSNDNDG 423 (559)
Q Consensus 394 ~~~~~R~yhs~a~llpdG~Vlv~GG~~~~~ 423 (559)
.|+.++.|. +.+.-.+.||++||+..++
T Consensus 335 eLp~~l~YG--~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 335 ELPQGLAYG--VSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred ccCCCccce--EEEecCCcEEEEccccCCC
Confidence 999999885 3445578999999986653
No 28
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.20 E-value=6e-10 Score=115.73 Aligned_cols=278 Identities=13% Similarity=0.113 Sum_probs=164.3
Q ss_pred CCEEeCccC----CCcccccCeecCCCcEEEEcCCCCC-CCeEEEEeCCCCCCeecCC--CccccccccceEEEccCCcE
Q 048136 110 LQVTPLKVI----TDTWCSSGGLDVNGNLISTGGFLGG-SRTTRYLWGCPTCDWTEYP--TALKDGRWYATQALLADGSF 182 (559)
Q Consensus 110 ~~w~~~~~~----~~~~c~~~~~l~dG~i~v~GG~~~g-~~~v~~ydp~~t~~W~~~~--~~m~~~R~y~s~~~L~dG~V 182 (559)
-.|+.+... +..+..+-++....-|+|+||-++| ..+..+|+.. +++|..-+ .+.+.+-..++.+.+ +.||
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTa-tnqWf~PavrGDiPpgcAA~Gfvcd-Gtri 94 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTA-TNQWFAPAVRGDIPPGCAAFGFVCD-GTRI 94 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccc-cceeecchhcCCCCCchhhcceEec-CceE
Confidence 367766432 2234444456667889999987666 4678899999 99997532 236666666666655 6799
Q ss_pred EEEcCCCC---CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecCcEEEeeCCCC-------
Q 048136 183 LIFGGRDS---FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRSILLDPRAN------- 251 (559)
Q Consensus 183 yvvGG~~~---~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~yDp~t~------- 251 (559)
|++||... .+.|.| -+..+| .|.++-|-.. .+.+.+...--|.+.+...|.|+|||-.-+.=||++|
T Consensus 95 lvFGGMvEYGkYsNdLYELQasRW-eWkrlkp~~p-~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnD 172 (830)
T KOG4152|consen 95 LVFGGMVEYGKYSNDLYELQASRW-EWKRLKPKTP-KNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLND 172 (830)
T ss_pred EEEccEeeeccccchHHHhhhhhh-hHhhcCCCCC-CCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcc
Confidence 99999754 355666 333222 2333333211 1111222223345778899999999832222233332
Q ss_pred -------------eEEEECCCCCCCCCcccC-CCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccC
Q 048136 252 -------------YVLREYPPLPGGARNYPS-TSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALD 317 (559)
Q Consensus 252 -------------~W~~~~p~mp~~~~~~p~-~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~ 317 (559)
.|. +|.- .+..--|| +.++|+.- .-.....|++|.||..+ . .+.
T Consensus 173 lY~leL~~Gsgvv~W~--ip~t-~Gv~P~pRESHTAViY~------eKDs~~skmvvyGGM~G-~------------RLg 230 (830)
T KOG4152|consen 173 LYILELRPGSGVVAWD--IPIT-YGVLPPPRESHTAVIYT------EKDSKKSKMVVYGGMSG-C------------RLG 230 (830)
T ss_pred eEEEEeccCCceEEEe--cccc-cCCCCCCcccceeEEEE------eccCCcceEEEEccccc-c------------ccc
Confidence 243 2210 01111122 34555542 11113679999999863 2 345
Q ss_pred ceEEEEecCCCCceeee----cCCCCcccccEEEeeCCeEEEEcCcCC--C----CCCccCCCCCCcccEEEeCCCCCCC
Q 048136 318 DCARMVVTSPDPVWTTE----KMPTPRVMSDGVLLPTGDVLLINGAEL--G----SAGWKDADKPCFKPLLYKPSKPPGS 387 (559)
Q Consensus 318 s~~~~d~~~~~~~W~~~----~M~~~R~~~~av~LpdG~V~vvGG~~~--g----~~g~~~~~~~~~~~e~YDP~t~~g~ 387 (559)
+...+|++. -.|... --|.+|+.|.+ .+..+|+||+||.-- + .+.-+.+-....+.-|+|-++.
T Consensus 231 DLW~Ldl~T--l~W~kp~~~G~~PlPRSLHsa-~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~--- 304 (830)
T KOG4152|consen 231 DLWTLDLDT--LTWNKPSLSGVAPLPRSLHSA-TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM--- 304 (830)
T ss_pred ceeEEecce--eecccccccCCCCCCcccccc-eeecceeEEecceeeeeccccccccccceeeeccceeeeeecch---
Confidence 566677764 688873 35788999975 566999999999520 0 0000011112335678999999
Q ss_pred eEEecC-------CCCCCccceeeeEECCCCceEEeCCCCC
Q 048136 388 RFTELA-------PSDIPRMYHSVANLLPDGRVFVGGSNDN 421 (559)
Q Consensus 388 ~Wt~~~-------~~~~~R~yhs~a~llpdG~Vlv~GG~~~ 421 (559)
+|+.+- ..+.+|..|+++.+ +-|+|+=-|.+.
T Consensus 305 ~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtRlYiWSGRDG 343 (830)
T KOG4152|consen 305 AWETLLMDTLEDNTIPRARAGHCAVAI--GTRLYIWSGRDG 343 (830)
T ss_pred heeeeeeccccccccccccccceeEEe--ccEEEEEeccch
Confidence 998641 25677889976666 889999888653
No 29
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.12 E-value=2.2e-09 Score=111.62 Aligned_cols=276 Identities=20% Similarity=0.288 Sum_probs=163.3
Q ss_pred CCCCCCcEEecCCCCC----cceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEe
Q 048136 31 APYFLGKWELLPNNPG----ISAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYN 106 (559)
Q Consensus 31 ~~~~~g~W~~~~~~~~----~~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yD 106 (559)
+....-+|..+....+ .|--|-++. ...-++||||-+.|. .| .-..|+
T Consensus 12 a~~~~~rWrrV~~~tGPvPrpRHGHRAVa-ikELiviFGGGNEGi------------------------iD---ELHvYN 63 (830)
T KOG4152|consen 12 AEKNVVRWRRVQQSTGPVPRPRHGHRAVA-IKELIVIFGGGNEGI------------------------ID---ELHVYN 63 (830)
T ss_pred hhhcccceEEEecccCCCCCccccchhee-eeeeEEEecCCcccc------------------------hh---hhhhhc
Confidence 3345668998865433 344577787 788889999854321 01 135799
Q ss_pred CCCCCEEeCccCC--CcccccCeecCCC-cEEEEcCCCC-CCCeEEEEeCCCCCC--eecCCC------ccccccccceE
Q 048136 107 VNTLQVTPLKVIT--DTWCSSGGLDVNG-NLISTGGFLG-GSRTTRYLWGCPTCD--WTEYPT------ALKDGRWYATQ 174 (559)
Q Consensus 107 p~t~~w~~~~~~~--~~~c~~~~~l~dG-~i~v~GG~~~-g~~~v~~ydp~~t~~--W~~~~~------~m~~~R~y~s~ 174 (559)
..+|+|..-+.-. ..-|++..++.|| +||++||..+ |.-+-+.|.-+ ..+ |..+.+ .++-+|-.|+-
T Consensus 64 TatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQ-asRWeWkrlkp~~p~nG~pPCPRlGHSF 142 (830)
T KOG4152|consen 64 TATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQ-ASRWEWKRLKPKTPKNGPPPCPRLGHSF 142 (830)
T ss_pred cccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhh-hhhhhHhhcCCCCCCCCCCCCCccCcee
Confidence 9999998655432 3568877777777 7999999753 32233456655 444 455421 25678999988
Q ss_pred EEccCCcEEEEcCCCC------Cce-----eEE-----cCCCCCCCcceecccccccccccc-CCccceEEEe--eC---
Q 048136 175 ALLADGSFLIFGGRDS------FSY-----EYI-----PAERTENAYSIPFQFLRDTYDVLE-NNLYPFVYLV--PD--- 232 (559)
Q Consensus 175 ~~L~dG~VyvvGG~~~------~s~-----E~y-----P~~~~~~~w~~~~p~l~~~~d~~~-~~~yp~~~~l--~~--- 232 (559)
.+. .+|-|++||..+ +++ ++| |-.+. -.|.... +....+ .+..|-+++- -|
T Consensus 143 sl~-gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgv-v~W~ip~-----t~Gv~P~pRESHTAViY~eKDs~~ 215 (830)
T KOG4152|consen 143 SLV-GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGV-VAWDIPI-----TYGVLPPPRESHTAVIYTEKDSKK 215 (830)
T ss_pred EEe-ccEeEEeccccccccCcccccchhhcceEEEEeccCCce-EEEeccc-----ccCCCCCCcccceeEEEEeccCCc
Confidence 766 799999999643 111 223 11110 1232211 001111 1222323222 13
Q ss_pred CcEEEEecC------cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCC---ccc
Q 048136 233 GNLYIFANN------RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVP---EAF 303 (559)
Q Consensus 233 G~iyv~Gg~------~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~---~~~ 303 (559)
-|+|++||- +.|.+|..|-+|.+ |.+.+- .-.||+-+++.+ ..+|.||+||.-. ...
T Consensus 216 skmvvyGGM~G~RLgDLW~Ldl~Tl~W~k--p~~~G~-~PlPRSLHsa~~-----------IGnKMyvfGGWVPl~~~~~ 281 (830)
T KOG4152|consen 216 SKMVVYGGMSGCRLGDLWTLDLDTLTWNK--PSLSGV-APLPRSLHSATT-----------IGNKMYVFGGWVPLVMDDV 281 (830)
T ss_pred ceEEEEcccccccccceeEEecceeeccc--ccccCC-CCCCccccccee-----------ecceeEEecceeeeecccc
Confidence 479999983 57889999999984 333321 112333333222 4889999999631 000
Q ss_pred cccccccccccccCceEEEEecCCCCceeee--------cCCCCcccccEEEeeCCeEEEEcCcC
Q 048136 304 YFGEVEKRLVPALDDCARMVVTSPDPVWTTE--------KMPTPRVMSDGVLLPTGDVLLINGAE 360 (559)
Q Consensus 304 ~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~--------~M~~~R~~~~av~LpdG~V~vvGG~~ 360 (559)
..+.-..-| .++++..|+++.+ ..|+.. ..|.+|..|+++++ +.++|+-.|++
T Consensus 282 ~~~~hekEW-kCTssl~clNldt--~~W~tl~~d~~ed~tiPR~RAGHCAvAi-gtRlYiWSGRD 342 (830)
T KOG4152|consen 282 KVATHEKEW-KCTSSLACLNLDT--MAWETLLMDTLEDNTIPRARAGHCAVAI-GTRLYIWSGRD 342 (830)
T ss_pred cccccccee-eeccceeeeeecc--hheeeeeeccccccccccccccceeEEe-ccEEEEEeccc
Confidence 000000011 3456777888875 789862 26888999987665 99999999986
No 30
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.09 E-value=1.1e-09 Score=111.66 Aligned_cols=197 Identities=14% Similarity=0.163 Sum_probs=131.5
Q ss_pred CCCCcEEecCC-C-CCcceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCC
Q 048136 33 YFLGKWELLPN-N-PGISAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTL 110 (559)
Q Consensus 33 ~~~g~W~~~~~-~-~~~~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~ 110 (559)
....+|..+.. + ++.|+-|.+++.+.|.+|++||--.. |+ +. +|+ ...-.-++|..++
T Consensus 105 ~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS------Pn--q~-qF~-----------HYkD~W~fd~~tr 164 (521)
T KOG1230|consen 105 TKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS------PN--QE-QFH-----------HYKDLWLFDLKTR 164 (521)
T ss_pred ccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC------cc--hh-hhh-----------hhhheeeeeeccc
Confidence 34689998742 2 34555565555477899999994222 32 11 111 0111357999999
Q ss_pred CEEeCccC--CCcccccCeecCCCcEEEEcCCCCC------CCeEEEEeCCCCCCeecCCCc--cccccccceEEEccCC
Q 048136 111 QVTPLKVI--TDTWCSSGGLDVNGNLISTGGFLGG------SRTTRYLWGCPTCDWTEYPTA--LKDGRWYATQALLADG 180 (559)
Q Consensus 111 ~w~~~~~~--~~~~c~~~~~l~dG~i~v~GG~~~g------~~~v~~ydp~~t~~W~~~~~~--m~~~R~y~s~~~L~dG 180 (559)
+|+++... +..+..+-+++...+|+++||+.+. .+.+++||-. +-+|+++.++ -+.+|..+...+.++|
T Consensus 165 kweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd-tykW~Klepsga~PtpRSGcq~~vtpqg 243 (521)
T KOG1230|consen 165 KWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD-TYKWSKLEPSGAGPTPRSGCQFSVTPQG 243 (521)
T ss_pred hheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc-ceeeeeccCCCCCCCCCCcceEEecCCC
Confidence 99999754 4556666678889999999998653 3789999999 8999998532 3688999999999999
Q ss_pred cEEEEcCCCC-----------CceeEE---cCCCCCCC--cceeccccccccccccCCccceEEEeeCCcEEEEec----
Q 048136 181 SFLIFGGRDS-----------FSYEYI---PAERTENA--YSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN---- 240 (559)
Q Consensus 181 ~VyvvGG~~~-----------~s~E~y---P~~~~~~~--w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg---- 240 (559)
.|||.||... ....+| |..+.-+. |..+-|.-.+. .+ |....+++.++++-+.|||
T Consensus 244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP---sp-Rsgfsv~va~n~kal~FGGV~D~ 319 (521)
T KOG1230|consen 244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP---SP-RSGFSVAVAKNHKALFFGGVCDL 319 (521)
T ss_pred cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC---CC-CCceeEEEecCCceEEecceecc
Confidence 9999999742 112344 65532122 44443431110 11 2333556778999999998
Q ss_pred ------------CcEEEeeCCCCeEE
Q 048136 241 ------------NRSILLDPRANYVL 254 (559)
Q Consensus 241 ------------~~~e~yDp~t~~W~ 254 (559)
++...||...|+|.
T Consensus 320 eeeeEsl~g~F~NDLy~fdlt~nrW~ 345 (521)
T KOG1230|consen 320 EEEEESLSGEFFNDLYFFDLTRNRWS 345 (521)
T ss_pred cccchhhhhhhhhhhhheecccchhh
Confidence 23457899999998
No 31
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.98 E-value=9e-09 Score=101.40 Aligned_cols=135 Identities=23% Similarity=0.387 Sum_probs=87.6
Q ss_pred cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEE
Q 048136 242 RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCAR 321 (559)
Q Consensus 242 ~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~ 321 (559)
.+.+||+.++++. .+.. + ...+ +++.++|+ +|++++.||...+. +.+..
T Consensus 47 ~s~~yD~~tn~~r-pl~v-~--td~F--CSgg~~L~-----------dG~ll~tGG~~~G~--------------~~ir~ 95 (243)
T PF07250_consen 47 HSVEYDPNTNTFR-PLTV-Q--TDTF--CSGGAFLP-----------DGRLLQTGGDNDGN--------------KAIRI 95 (243)
T ss_pred EEEEEecCCCcEE-eccC-C--CCCc--ccCcCCCC-----------CCCEEEeCCCCccc--------------cceEE
Confidence 3568999999987 4542 2 1223 34445554 89999999976432 23344
Q ss_pred EEecC--CCCceeee--cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCC--CCeEEecCCC
Q 048136 322 MVVTS--PDPVWTTE--KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPP--GSRFTELAPS 395 (559)
Q Consensus 322 ~d~~~--~~~~W~~~--~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~--g~~Wt~~~~~ 395 (559)
|++.. ....|.+. .|..+|.+.+++.|+||+|+|+||... .+.|.|.+.... ...|..+...
T Consensus 96 ~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~------------~t~E~~P~~~~~~~~~~~~~l~~~ 163 (243)
T PF07250_consen 96 FTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN------------PTYEFWPPKGPGPGPVTLPFLSQT 163 (243)
T ss_pred EecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC------------CcccccCCccCCCCceeeecchhh
Confidence 55542 23579885 699999999999999999999999762 145666653321 1234333221
Q ss_pred --CCCccceeeeEECCCCceEEeCCC
Q 048136 396 --DIPRMYHSVANLLPDGRVFVGGSN 419 (559)
Q Consensus 396 --~~~R~yhs~a~llpdG~Vlv~GG~ 419 (559)
..+..+.=-.-|||||+||+.+..
T Consensus 164 ~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 164 SDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred hccCccccCceEEEcCCCCEEEEEcC
Confidence 223332225678999999999875
No 32
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.95 E-value=4e-08 Score=99.14 Aligned_cols=241 Identities=17% Similarity=0.204 Sum_probs=142.4
Q ss_pred CcEEecCCCCCc-ceeEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCCCEEe
Q 048136 36 GKWELLPNNPGI-SAMHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTLQVTP 114 (559)
Q Consensus 36 g~W~~~~~~~~~-~~~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~ 114 (559)
-.|+.++..++. |-..+..+ .++|+|+++|.....+ ..| .....+..|||.+|+|..
T Consensus 70 k~W~~~a~FpG~~rnqa~~a~-~~~kLyvFgG~Gk~~~--~~~-------------------~~~nd~Y~y~p~~nsW~k 127 (381)
T COG3055 70 KGWTKIADFPGGARNQAVAAV-IGGKLYVFGGYGKSVS--SSP-------------------QVFNDAYRYDPSTNSWHK 127 (381)
T ss_pred CCceEcccCCCcccccchhee-eCCeEEEeeccccCCC--CCc-------------------eEeeeeEEecCCCChhhe
Confidence 469998877655 34455555 7999999999742111 101 123447899999999999
Q ss_pred CccCCCc-ccccCeecCCC-cEEEEcCCC-----------------------------C-------CCCeEEEEeCCCCC
Q 048136 115 LKVITDT-WCSSGGLDVNG-NLISTGGFL-----------------------------G-------GSRTTRYLWGCPTC 156 (559)
Q Consensus 115 ~~~~~~~-~c~~~~~l~dG-~i~v~GG~~-----------------------------~-------g~~~v~~ydp~~t~ 156 (559)
+.....+ .-.+.++.+++ +|+++||.. + -.+.+..|||+ ++
T Consensus 128 l~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~-~n 206 (381)
T COG3055 128 LDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPS-TN 206 (381)
T ss_pred eccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccc-cc
Confidence 8764322 33334445555 999999952 0 02567889999 99
Q ss_pred CeecCCCccccccccceEEEccCCcEEEEcCCCCCceeEEcCCCCCCCcceeccccccccccccCCccceEEEeeCCcEE
Q 048136 157 DWTEYPTALKDGRWYATQALLADGSFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLY 236 (559)
Q Consensus 157 ~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iy 236 (559)
.|+.+...--.++.. ++++..++++.+|-| |++|-.. +.|....
T Consensus 207 ~W~~~G~~pf~~~aG-sa~~~~~n~~~lInG------EiKpGLR--t~~~k~~--------------------------- 250 (381)
T COG3055 207 QWRNLGENPFYGNAG-SAVVIKGNKLTLING------EIKPGLR--TAEVKQA--------------------------- 250 (381)
T ss_pred hhhhcCcCcccCccC-cceeecCCeEEEEcc------eecCCcc--ccceeEE---------------------------
Confidence 999875312345655 444555788888877 4444321 1121111
Q ss_pred EEecCcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCC-cc---ccccccccc-
Q 048136 237 IFANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVP-EA---FYFGEVEKR- 311 (559)
Q Consensus 237 v~Gg~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~-~~---~~~~~~~~~- 311 (559)
.+.-..-+|. .++++|.. ......|.+=.+ ....++++++.||..- ++ |. ++.
T Consensus 251 --------~~~~~~~~w~-~l~~lp~~-~~~~~eGvAGaf--------~G~s~~~~lv~GGAnF~Ga~~~y~----~Gk~ 308 (381)
T COG3055 251 --------DFGGDNLKWL-KLSDLPAP-IGSNKEGVAGAF--------SGKSNGEVLVAGGANFPGALKAYK----NGKF 308 (381)
T ss_pred --------EeccCceeee-eccCCCCC-CCCCccccceec--------cceeCCeEEEecCCCChhHHHHHH----hccc
Confidence 1122334677 57776642 222111211111 1124789999999752 11 11 111
Q ss_pred cccc------cCceEEEEecCCCCceeee-cCCCCcccccEEEeeCCeEEEEcCcCCC
Q 048136 312 LVPA------LDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAELG 362 (559)
Q Consensus 312 ~~~a------~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~~g 362 (559)
|... .+.+..+| ++.|... .||.++.++. .+.-+++||++||...+
T Consensus 309 ~AH~Gl~K~w~~~Vy~~d----~g~Wk~~GeLp~~l~YG~-s~~~nn~vl~IGGE~~~ 361 (381)
T COG3055 309 YAHEGLSKSWNSEVYIFD----NGSWKIVGELPQGLAYGV-SLSYNNKVLLIGGETSG 361 (381)
T ss_pred ccccchhhhhhceEEEEc----CCceeeecccCCCccceE-EEecCCcEEEEccccCC
Confidence 1111 23444454 4899998 9999999984 56668999999998753
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.75 E-value=2.3e-08 Score=74.04 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=41.2
Q ss_pred CcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCc
Q 048136 339 PRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPR 399 (559)
Q Consensus 339 ~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R 399 (559)
+|..++ ++..+++|||+||.... ......+++|||+++ +|+.+++|+.||
T Consensus 1 pR~~~s-~v~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHS-AVVVGGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPPMPTPR 50 (50)
T ss_pred CCccCE-EEEECCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCCCCCCC
Confidence 578885 45679999999998631 234558999999999 999999999998
No 34
>PF13964 Kelch_6: Kelch motif
Probab=98.46 E-value=2.2e-07 Score=68.71 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=39.8
Q ss_pred ccccCeecCCCcEEEEcCCCC-C--CCeEEEEeCCCCCCeecCCCcccccc
Q 048136 122 WCSSGGLDVNGNLISTGGFLG-G--SRTTRYLWGCPTCDWTEYPTALKDGR 169 (559)
Q Consensus 122 ~c~~~~~l~dG~i~v~GG~~~-g--~~~v~~ydp~~t~~W~~~~~~m~~~R 169 (559)
+|.++++..+++|||+||..+ . .+++++|||. +++|+++++ |+.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~-mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPE-TNTWEQLPP-MPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCC-CCcEEECCC-CCCCC
Confidence 566778888999999999864 2 5889999999 999999986 99987
No 35
>smart00612 Kelch Kelch domain.
Probab=98.42 E-value=3.9e-07 Score=65.78 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=37.6
Q ss_pred eEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEE
Q 048136 352 DVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANL 407 (559)
Q Consensus 352 ~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~l 407 (559)
+|||+||... ......+|+|||.++ +|+.+++|+.+|.+|+++++
T Consensus 1 ~iyv~GG~~~--------~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDG--------GQRLKSVEVYDPETN---KWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCC--------CceeeeEEEECCCCC---eEccCCCCCCccccceEEEe
Confidence 5899999752 123457999999999 99999999999999987766
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.32 E-value=4.8e-07 Score=65.83 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=37.4
Q ss_pred CcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCC
Q 048136 339 PRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSD 396 (559)
Q Consensus 339 ~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~ 396 (559)
+|..+. ++..+++|||+||... ......++|+|||+++ +|+.+++|+
T Consensus 1 pR~~~~-~~~~~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHA-AVVVGNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPPMP 47 (47)
T ss_dssp -BBSEE-EEEETTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEEES
T ss_pred CCccCE-EEEECCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCCCC
Confidence 578885 5666999999999873 1235568999999999 999998875
No 37
>smart00612 Kelch Kelch domain.
Probab=98.17 E-value=3.2e-06 Score=60.89 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=38.1
Q ss_pred cEEEEcCCCC--CCCeEEEEeCCCCCCeecCCCccccccccceEEEccCC
Q 048136 133 NLISTGGFLG--GSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADG 180 (559)
Q Consensus 133 ~i~v~GG~~~--g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG 180 (559)
+||++||... ..+++++|||. +++|++.++ |+.+|.+++++++ +|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~-~~~~r~~~~~~~~-~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPE-TNKWTPLPS-MPTPRSGHGVAVI-NG 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCC-CCeEccCCC-CCCccccceEEEe-CC
Confidence 5899999853 24789999999 999999986 9999999998887 44
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.04 E-value=4.5e-06 Score=61.32 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=29.5
Q ss_pred CcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCC
Q 048136 339 PRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSD 396 (559)
Q Consensus 339 ~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~ 396 (559)
+|..|+++.+.+++|||+||.... ......+++||++++ +|+++++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~---~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-------GSPLNDLWIFDIETN---TWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--------TEE---EEEEETTTT---EEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-------CcccCCEEEEECCCC---EEEECCCCC
Confidence 689998877778999999998631 124457899999999 999998776
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.01 E-value=1.3e-05 Score=58.95 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=38.8
Q ss_pred CCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeE
Q 048136 350 TGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVAN 406 (559)
Q Consensus 350 dG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~ 406 (559)
+++|||+||.... ......++.+||++++ +|+++++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~------~~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDD------GGTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCC------CCCEecCEEEEECCCC---EEEECCCCCCCccceEEEE
Confidence 5789999998621 1223457999999999 9999999999999997654
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.01 E-value=1.5e-05 Score=58.61 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=36.2
Q ss_pred CcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCC
Q 048136 339 PRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSD 396 (559)
Q Consensus 339 ~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~ 396 (559)
+|..|. ++++|+||||+||...+. .......+++||++++ +|+.+++|+
T Consensus 1 ~r~~hs-~~~~~~kiyv~GG~~~~~-----~~~~~~~v~~~d~~t~---~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHS-AVVLDGKIYVFGGYGTDN-----GGSSSNDVWVFDTETN---QWTELSPMG 49 (49)
T ss_pred CccceE-EEEECCEEEEECCcccCC-----CCcccceeEEEECCCC---EEeecCCCC
Confidence 577784 667899999999981111 1122347999999999 999998773
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.86 E-value=6.4e-06 Score=59.80 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=35.9
Q ss_pred ccccCeecCCCcEEEEcCCCC-C--CCeEEEEeCCCCCCeecCCCccc
Q 048136 122 WCSSGGLDVNGNLISTGGFLG-G--SRTTRYLWGCPTCDWTEYPTALK 166 (559)
Q Consensus 122 ~c~~~~~l~dG~i~v~GG~~~-g--~~~v~~ydp~~t~~W~~~~~~m~ 166 (559)
++..+++..+++|||+||... . .+++++||+. +++|+++++ |+
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~-mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE-TNTWEELPP-MP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETT-TTEEEEEEE-ES
T ss_pred CccCEEEEECCEEEEEeeecccCceeeeEEEEeCC-CCEEEEcCC-CC
Confidence 566678888999999999854 2 4789999999 999999975 74
No 42
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.77 E-value=5.1e-05 Score=55.78 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCC-C---CCeEEEEeCCCCCCeecCCCccccccccceEEE
Q 048136 131 NGNLISTGGFLG-G---SRTTRYLWGCPTCDWTEYPTALKDGRWYATQAL 176 (559)
Q Consensus 131 dG~i~v~GG~~~-g---~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~ 176 (559)
+++|||+||... + .+++++||+. +++|+++++ ++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~-~~~W~~~~~-~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLD-TNTWTRIGD-LPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECC-CCEEEECCC-CCCCccceEEEE
Confidence 578999999862 2 4789999999 999999975 999999998875
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.53 E-value=0.00017 Score=52.75 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=24.4
Q ss_pred ccceEEEeeCCcEEEEec--------CcEEEeeCCCCeEEEECCCCC
Q 048136 223 LYPFVYLVPDGNLYIFAN--------NRSILLDPRANYVLREYPPLP 261 (559)
Q Consensus 223 ~yp~~~~l~~G~iyv~Gg--------~~~e~yDp~t~~W~~~~p~mp 261 (559)
.++.++.+.+++||++|| +++++||+++++|+ .+++||
T Consensus 3 ~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~-~~~~~P 48 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWT-RLPSMP 48 (49)
T ss_dssp BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEE-E--SS-
T ss_pred ceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEE-ECCCCC
Confidence 455566666899999998 36899999999999 588876
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.42 E-value=0.00021 Score=52.45 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=32.8
Q ss_pred ccccCeecCCCcEEEEcCC--CCC---CCeEEEEeCCCCCCeecCCC
Q 048136 122 WCSSGGLDVNGNLISTGGF--LGG---SRTTRYLWGCPTCDWTEYPT 163 (559)
Q Consensus 122 ~c~~~~~l~dG~i~v~GG~--~~g---~~~v~~ydp~~t~~W~~~~~ 163 (559)
++...+++++++||++||. ... .+++++||+. +++|++++.
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~-t~~W~~~~~ 47 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE-TNQWTELSP 47 (49)
T ss_pred ccceEEEEECCEEEEECCcccCCCCcccceeEEEECC-CCEEeecCC
Confidence 3445677889999999999 211 4789999999 999999874
No 45
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.28 E-value=0.22 Score=49.80 Aligned_cols=222 Identities=18% Similarity=0.253 Sum_probs=120.7
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEeCCCCCCee---cCCCccccccccceEEEcc-CCcEEEEcCCCCCceeEE-cCCCC
Q 048136 127 GLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWT---EYPTALKDGRWYATQALLA-DGSFLIFGGRDSFSYEYI-PAERT 201 (559)
Q Consensus 127 ~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~---~~~~~m~~~R~y~s~~~L~-dG~VyvvGG~~~~s~E~y-P~~~~ 201 (559)
+.-|.|+.+..||.. +.+.+|+.. +.+=. .+...+...+.|-+.+... |+.|+.-.|- .+.-+| -+++
T Consensus 104 A~sPSg~~VAcGGLd---N~Csiy~ls-~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--~TCalWDie~g- 176 (343)
T KOG0286|consen 104 AYSPSGNFVACGGLD---NKCSIYPLS-TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--MTCALWDIETG- 176 (343)
T ss_pred EECCCCCeEEecCcC---ceeEEEecc-cccccccceeeeeecCccceeEEEEEcCCCceEecCCC--ceEEEEEcccc-
Confidence 346899999999984 678889876 43222 2222355667788877644 5666655553 234445 2222
Q ss_pred CCCcceeccccccccccccCCccceEEEee-CCcEEEEec--CcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeeccc
Q 048136 202 ENAYSIPFQFLRDTYDVLENNLYPFVYLVP-DGNLYIFAN--NRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPL 278 (559)
Q Consensus 202 ~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~-~G~iyv~Gg--~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl 278 (559)
.....+.-.+-| --...+.| +++.|+.|+ ..+.+||.+...-.+.+ ++..... .+....|
T Consensus 177 ----~~~~~f~GH~gD------V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF---~ghesDI---Nsv~ffP- 239 (343)
T KOG0286|consen 177 ----QQTQVFHGHTGD------VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF---EGHESDI---NSVRFFP- 239 (343)
T ss_pred ----eEEEEecCCccc------EEEEecCCCCCCeEEecccccceeeeeccCcceeEee---ccccccc---ceEEEcc-
Confidence 112222111111 01123445 899999998 46788998887655433 2211111 1222333
Q ss_pred ccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCC--CceeeecCCCCcccccEEEeeCCeEEEE
Q 048136 279 KLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPD--PVWTTEKMPTPRVMSDGVLLPTGDVLLI 356 (559)
Q Consensus 279 ~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~--~~W~~~~M~~~R~~~~av~LpdG~V~vv 356 (559)
+|.-++.|-.+ .+|-.||+...- ..++.++...+-... ..-..|+++..
T Consensus 240 ----------~G~afatGSDD-----------------~tcRlyDlRaD~~~a~ys~~~~~~gitSv--~FS~SGRlLfa 290 (343)
T KOG0286|consen 240 ----------SGDAFATGSDD-----------------ATCRLYDLRADQELAVYSHDSIICGITSV--AFSKSGRLLFA 290 (343)
T ss_pred ----------CCCeeeecCCC-----------------ceeEEEeecCCcEEeeeccCcccCCceeE--EEcccccEEEe
Confidence 45555555322 367788887510 111112222222222 12247999998
Q ss_pred cCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceEEeCCC
Q 048136 357 NGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSN 419 (559)
Q Consensus 357 GG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~ 419 (559)
|..+ +.+++||.-+. .+-..+. -..-|. |+.-+.|||.-+..|+=
T Consensus 291 gy~d-------------~~c~vWDtlk~--e~vg~L~-GHeNRv--Scl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 291 GYDD-------------FTCNVWDTLKG--ERVGVLA-GHENRV--SCLGVSPDGMAVATGSW 335 (343)
T ss_pred eecC-------------CceeEeecccc--ceEEEee-ccCCee--EEEEECCCCcEEEecch
Confidence 7543 26789987665 1333343 233443 56677899999998874
No 46
>PLN02772 guanylate kinase
Probab=97.20 E-value=0.001 Score=69.88 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=53.6
Q ss_pred CcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEe---cCCCCCCccceeeeEECCCCceEE
Q 048136 339 PRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTE---LAPSDIPRMYHSVANLLPDGRVFV 415 (559)
Q Consensus 339 ~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~---~~~~~~~R~yhs~a~llpdG~Vlv 415 (559)
+|..+++ +..++|+||+||.... ......+.+||+.+. +|+. ....|.||..|| |+++-|.||||
T Consensus 24 ~~~~~ta-v~igdk~yv~GG~~d~-------~~~~~~v~i~D~~t~---~W~~P~V~G~~P~~r~GhS-a~v~~~~rilv 91 (398)
T PLN02772 24 PKNRETS-VTIGDKTYVIGGNHEG-------NTLSIGVQILDKITN---NWVSPIVLGTGPKPCKGYS-AVVLNKDRILV 91 (398)
T ss_pred CCCccee-EEECCEEEEEcccCCC-------ccccceEEEEECCCC---cEecccccCCCCCCCCcce-EEEECCceEEE
Confidence 6677754 5569999999997631 112347899999999 9985 467888999996 56668999999
Q ss_pred eCCCC
Q 048136 416 GGSND 420 (559)
Q Consensus 416 ~GG~~ 420 (559)
.+++.
T Consensus 92 ~~~~~ 96 (398)
T PLN02772 92 IKKGS 96 (398)
T ss_pred EeCCC
Confidence 98753
No 47
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.02 E-value=0.64 Score=49.56 Aligned_cols=248 Identities=12% Similarity=0.127 Sum_probs=116.6
Q ss_pred eEEEeCCCCC--EEeC-ccCC-------CcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCC-CCCeecCCCccccccc
Q 048136 102 SVFYNVNTLQ--VTPL-KVIT-------DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCP-TCDWTEYPTALKDGRW 170 (559)
Q Consensus 102 ~~~yDp~t~~--w~~~-~~~~-------~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~-t~~W~~~~~~m~~~R~ 170 (559)
..++|.++++ |+.- .... ....+++.++.+++||+.+.. ..+..+|..+ .-.|+.- +...-
T Consensus 81 l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~----g~l~ald~~tG~~~W~~~---~~~~~- 152 (394)
T PRK11138 81 VKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK----GQVYALNAEDGEVAWQTK---VAGEA- 152 (394)
T ss_pred EEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC----CEEEEEECCCCCCccccc---CCCce-
Confidence 4667776654 6532 1100 112234456667888875432 4688999872 3358653 22211
Q ss_pred cceEEEccCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec-CcEEEeeC
Q 048136 171 YATQALLADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN-NRSILLDP 248 (559)
Q Consensus 171 y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg-~~~e~yDp 248 (559)
+.+. ++.+++||+..+.. .+..+ +++++ ..|........... ....-| ++.+|.+|+..+ ..+..+|+
T Consensus 153 ~ssP-~v~~~~v~v~~~~g--~l~ald~~tG~-~~W~~~~~~~~~~~---~~~~sP---~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 153 LSRP-VVSDGLVLVHTSNG--MLQALNESDGA-VKWTVNLDVPSLTL---RGESAP---ATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ecCC-EEECCEEEEECCCC--EEEEEEccCCC-EeeeecCCCCcccc---cCCCCC---EEECCEEEEEcCCCEEEEEEc
Confidence 2222 34488888865432 23444 55543 23433221100000 000122 234677776544 34667888
Q ss_pred CCCe--EEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecC
Q 048136 249 RANY--VLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTS 326 (559)
Q Consensus 249 ~t~~--W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~ 326 (559)
++++ |...+. .|.+.....+......-|+ ..++.||+++.. ....++|+.+
T Consensus 223 ~~G~~~W~~~~~-~~~~~~~~~~~~~~~~sP~--------v~~~~vy~~~~~------------------g~l~ald~~t 275 (394)
T PRK11138 223 EQGQLIWQQRIS-QPTGATEIDRLVDVDTTPV--------VVGGVVYALAYN------------------GNLVALDLRS 275 (394)
T ss_pred cCChhhheeccc-cCCCccchhcccccCCCcE--------EECCEEEEEEcC------------------CeEEEEECCC
Confidence 8764 653221 1111000000000000011 136788876531 1345677765
Q ss_pred CCCceeeecCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeE
Q 048136 327 PDPVWTTEKMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVAN 406 (559)
Q Consensus 327 ~~~~W~~~~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~ 406 (559)
....|+.. ....+ ..++.+|+||+..... .+.++|+++.+ ..|+.-.. ..+...+.++
T Consensus 276 G~~~W~~~-~~~~~----~~~~~~~~vy~~~~~g--------------~l~ald~~tG~-~~W~~~~~--~~~~~~sp~v 333 (394)
T PRK11138 276 GQIVWKRE-YGSVN----DFAVDGGRIYLVDQND--------------RVYALDTRGGV-ELWSQSDL--LHRLLTAPVL 333 (394)
T ss_pred CCEEEeec-CCCcc----CcEEECCEEEEEcCCC--------------eEEEEECCCCc-EEEccccc--CCCcccCCEE
Confidence 55678764 11111 1345689999865321 46788887652 26864211 1222222233
Q ss_pred ECCCCceEEeCC
Q 048136 407 LLPDGRVFVGGS 418 (559)
Q Consensus 407 llpdG~Vlv~GG 418 (559)
-+|+||+...
T Consensus 334 --~~g~l~v~~~ 343 (394)
T PRK11138 334 --YNGYLVVGDS 343 (394)
T ss_pred --ECCEEEEEeC
Confidence 4899988643
No 48
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.01 E-value=0.33 Score=51.72 Aligned_cols=239 Identities=12% Similarity=0.130 Sum_probs=118.8
Q ss_pred eeEEEeCCCCC--EEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCC--eecCCCccc--cccccceE
Q 048136 101 HSVFYNVNTLQ--VTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCD--WTEYPTALK--DGRWYATQ 174 (559)
Q Consensus 101 ~~~~yDp~t~~--w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~--W~~~~~~m~--~~R~y~s~ 174 (559)
...++|.+|++ |+.-.. .... +..++.+++||+..+. ..+..||+. +.+ |+.-.. .+ ..|...+-
T Consensus 131 ~l~ald~~tG~~~W~~~~~-~~~~--ssP~v~~~~v~v~~~~----g~l~ald~~-tG~~~W~~~~~-~~~~~~~~~~sP 201 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVA-GEAL--SRPVVSDGLVLVHTSN----GMLQALNES-DGAVKWTVNLD-VPSLTLRGESAP 201 (394)
T ss_pred EEEEEECCCCCCcccccCC-Ccee--cCCEEECCEEEEECCC----CEEEEEEcc-CCCEeeeecCC-CCcccccCCCCC
Confidence 46788988875 654221 1122 2334568888875442 468899997 554 875321 11 11222333
Q ss_pred EEccCCcEEEEcCCCCCceeEE-cCCCCCCCcceecccccccccc---ccCCccceEEEeeCCcEEEEec-CcEEEeeCC
Q 048136 175 ALLADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDV---LENNLYPFVYLVPDGNLYIFAN-NRSILLDPR 249 (559)
Q Consensus 175 ~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~---~~~~~yp~~~~l~~G~iyv~Gg-~~~e~yDp~ 249 (559)
++. +|.+|+..+. + .+-.+ +++++ ..|............. ......| ++.+|.||+.+. ....++|++
T Consensus 202 ~v~-~~~v~~~~~~-g-~v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~~~sP---~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 202 ATA-FGGAIVGGDN-G-RVSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDVDTTP---VVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred EEE-CCEEEEEcCC-C-EEEEEEccCCh-hhheeccccCCCccchhcccccCCCc---EEECCEEEEEEcCCeEEEEECC
Confidence 333 6777775543 2 12222 44442 2343211100000000 0000122 345899998763 467889998
Q ss_pred CCe--EEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCC
Q 048136 250 ANY--VLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSP 327 (559)
Q Consensus 250 t~~--W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~ 327 (559)
+++ |.+.+.. + ...++ .+++||++... ..+.++|+.+.
T Consensus 275 tG~~~W~~~~~~--------~--~~~~~------------~~~~vy~~~~~------------------g~l~ald~~tG 314 (394)
T PRK11138 275 SGQIVWKREYGS--------V--NDFAV------------DGGRIYLVDQN------------------DRVYALDTRGG 314 (394)
T ss_pred CCCEEEeecCCC--------c--cCcEE------------ECCEEEEEcCC------------------CeEEEEECCCC
Confidence 874 6532210 0 01111 37888887532 23456676654
Q ss_pred CCceeeecCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEe-cCCCCCCccceeeeE
Q 048136 328 DPVWTTEKMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTE-LAPSDIPRMYHSVAN 406 (559)
Q Consensus 328 ~~~W~~~~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~-~~~~~~~R~yhs~a~ 406 (559)
...|+...+.. +.... .++.+|+||+.... | .+.++|+++.+- .|+. +.. .+.+.+-++
T Consensus 315 ~~~W~~~~~~~-~~~~s-p~v~~g~l~v~~~~--G------------~l~~ld~~tG~~-~~~~~~~~---~~~~s~P~~ 374 (394)
T PRK11138 315 VELWSQSDLLH-RLLTA-PVLYNGYLVVGDSE--G------------YLHWINREDGRF-VAQQKVDS---SGFLSEPVV 374 (394)
T ss_pred cEEEcccccCC-CcccC-CEEECCEEEEEeCC--C------------EEEEEECCCCCE-EEEEEcCC---CcceeCCEE
Confidence 45787643322 33332 34459999875321 1 456788877521 4553 211 123333333
Q ss_pred ECCCCceEEeC
Q 048136 407 LLPDGRVFVGG 417 (559)
Q Consensus 407 llpdG~Vlv~G 417 (559)
.|++|||..
T Consensus 375 --~~~~l~v~t 383 (394)
T PRK11138 375 --ADDKLLIQA 383 (394)
T ss_pred --ECCEEEEEe
Confidence 488988874
No 49
>PLN02772 guanylate kinase
Probab=96.78 E-value=0.0044 Score=65.26 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=54.1
Q ss_pred cccccCeecCCCcEEEEcCCCCC---CCeEEEEeCCCCCCeecCC--CccccccccceEEEccCCcEEEEcCCC
Q 048136 121 TWCSSGGLDVNGNLISTGGFLGG---SRTTRYLWGCPTCDWTEYP--TALKDGRWYATQALLADGSFLIFGGRD 189 (559)
Q Consensus 121 ~~c~~~~~l~dG~i~v~GG~~~g---~~~v~~ydp~~t~~W~~~~--~~m~~~R~y~s~~~L~dG~VyvvGG~~ 189 (559)
..|...++..+.++||+||..+. .+.+++||+. +.+|.... ..-+.+|-.|+++++.+++|+|+++-.
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~-t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKI-TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccccceEEEEECC-CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 34445667779999999997653 3589999999 99998743 235788999999999999999998643
No 50
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.76 E-value=0.6 Score=46.64 Aligned_cols=220 Identities=19% Similarity=0.128 Sum_probs=121.2
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccc---eEEEcc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYA---TQALLA 178 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~---s~~~L~ 178 (559)
....||.|++...++.-....=++.+.-+||...|+ |....+.++||+ +...++.+ |+..+.+. +++.-+
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit----d~~~aI~R~dpk-t~evt~f~--lp~~~a~~nlet~vfD~ 157 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT----DTGLAIGRLDPK-TLEVTRFP--LPLEHADANLETAVFDP 157 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEe----cCcceeEEecCc-ccceEEee--cccccCCCcccceeeCC
Confidence 456899999988877554333334566678888887 333478899998 77666542 33333332 334445
Q ss_pred CCcEEEEcCCCCCceeEEcCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEE--ecCcEEEeeCCCCeEEEE
Q 048136 179 DGSFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIF--ANNRSILLDPRANYVLRE 256 (559)
Q Consensus 179 dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~--Gg~~~e~yDp~t~~W~~~ 256 (559)
+|.+..+|-... -.+.-|.++. ..+.|..+.- .-| .+++.+||.+|+. .|+-.-+.||.+..=+ .
T Consensus 158 ~G~lWFt~q~G~-yGrLdPa~~~----i~vfpaPqG~------gpy-Gi~atpdGsvwyaslagnaiaridp~~~~ae-v 224 (353)
T COG4257 158 WGNLWFTGQIGA-YGRLDPARNV----ISVFPAPQGG------GPY-GICATPDGSVWYASLAGNAIARIDPFAGHAE-V 224 (353)
T ss_pred CccEEEeecccc-ceecCcccCc----eeeeccCCCC------CCc-ceEECCCCcEEEEeccccceEEcccccCCcc-e
Confidence 688888774221 0011133221 1111111110 011 3567889999987 6777778899887543 3
Q ss_pred CCCCCCCCCc-ccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeeec
Q 048136 257 YPPLPGGARN-YPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTEK 335 (559)
Q Consensus 257 ~p~mp~~~~~-~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~~ 335 (559)
+| .|.+... ..+..+. --+++.+. + -...+.++|||.. .+|.+-+
T Consensus 225 ~p-~P~~~~~gsRriwsd--------------pig~~wit---t--------------wg~g~l~rfdPs~--~sW~eyp 270 (353)
T COG4257 225 VP-QPNALKAGSRRIWSD--------------PIGRAWIT---T--------------WGTGSLHRFDPSV--TSWIEYP 270 (353)
T ss_pred ec-CCCcccccccccccC--------------ccCcEEEe---c--------------cCCceeeEeCccc--ccceeee
Confidence 43 2322010 0000110 13555554 1 0123567888875 6798865
Q ss_pred CC--CCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEec
Q 048136 336 MP--TPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTEL 392 (559)
Q Consensus 336 M~--~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~ 392 (559)
|| .+|-.. +-+=-.|+|+..- .. ...+..|||++. +|+.+
T Consensus 271 LPgs~arpys-~rVD~~grVW~se-a~------------agai~rfdpeta---~ftv~ 312 (353)
T COG4257 271 LPGSKARPYS-MRVDRHGRVWLSE-AD------------AGAIGRFDPETA---RFTVL 312 (353)
T ss_pred CCCCCCCcce-eeeccCCcEEeec-cc------------cCceeecCcccc---eEEEe
Confidence 55 455554 2233346676521 11 125789999999 99986
No 51
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.79 E-value=2.2 Score=44.70 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=120.2
Q ss_pred eEEEeCCCCCEEeCccCCCc-ccccCeecCCC-cEEEEcCCCCCCCeEEEE--eCCCCCCeecCCCccc-cccccceEEE
Q 048136 102 SVFYNVNTLQVTPLKVITDT-WCSSGGLDVNG-NLISTGGFLGGSRTTRYL--WGCPTCDWTEYPTALK-DGRWYATQAL 176 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~-~c~~~~~l~dG-~i~v~GG~~~g~~~v~~y--dp~~t~~W~~~~~~m~-~~R~y~s~~~ 176 (559)
...||.++++++.+...... ..+.-++.+++ .||++.-.......+..| ++. +.+.+.+.. .. .+..-...++
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-~g~L~~~~~-~~~~g~~p~~i~~ 94 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-TGTLTLLNS-VPSGGSSPCHIAV 94 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-TTEEEEEEE-EEESSSCEEEEEE
T ss_pred EEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-cceeEEeee-eccCCCCcEEEEE
Confidence 56778899999876642111 11112233454 567764431022344444 444 456666643 33 4444344555
Q ss_pred ccCCcEEEEcCCCCCceeEEcCCCCCCCcc-eeccccc----cc-cccccCCccce-EEEeeCCcEEEE---ecCcEEEe
Q 048136 177 LADGSFLIFGGRDSFSYEYIPAERTENAYS-IPFQFLR----DT-YDVLENNLYPF-VYLVPDGNLYIF---ANNRSILL 246 (559)
Q Consensus 177 L~dG~VyvvGG~~~~s~E~yP~~~~~~~w~-~~~p~l~----~~-~d~~~~~~yp~-~~~l~~G~iyv~---Gg~~~e~y 246 (559)
-+||+.+++.-..+.++.+|+.... ... ....... .. .+.+ ...+|| +...+||+.+++ |...+.+|
T Consensus 95 ~~~g~~l~vany~~g~v~v~~l~~~--g~l~~~~~~~~~~g~g~~~~rq-~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 95 DPDGRFLYVANYGGGSVSVFPLDDD--GSLGEVVQTVRHEGSGPNPDRQ-EGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTT--SEEEEEEEEEESEEEESSTTTT-SSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ecCCCEEEEEEccCCeEEEEEccCC--cccceeeeecccCCCCCccccc-ccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 5678777765544456777732210 010 0000000 00 0001 112334 445678875444 45678888
Q ss_pred eCCCCe--EEEECC--CCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEE
Q 048136 247 DPRANY--VLREYP--PLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARM 322 (559)
Q Consensus 247 Dp~t~~--W~~~~p--~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~ 322 (559)
+...+. ... .. .+|.+ .-|| +.++.| ....+|++.-.. +++..|
T Consensus 172 ~~~~~~~~l~~-~~~~~~~~G--~GPR--h~~f~p----------dg~~~Yv~~e~s-----------------~~v~v~ 219 (345)
T PF10282_consen 172 DIDDDTGKLTP-VDSIKVPPG--SGPR--HLAFSP----------DGKYAYVVNELS-----------------NTVSVF 219 (345)
T ss_dssp EE-TTS-TEEE-EEEEECSTT--SSEE--EEEE-T----------TSSEEEEEETTT-----------------TEEEEE
T ss_pred EEeCCCceEEE-eeccccccC--CCCc--EEEEcC----------CcCEEEEecCCC-----------------CcEEEE
Confidence 887665 431 11 12211 1122 233332 134677775432 345556
Q ss_pred EecCCCCceeee----cCCC---Cc-ccccEEEeeCCe-EEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecC
Q 048136 323 VVTSPDPVWTTE----KMPT---PR-VMSDGVLLPTGD-VLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELA 393 (559)
Q Consensus 323 d~~~~~~~W~~~----~M~~---~R-~~~~av~LpdG~-V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~ 393 (559)
+....+..++.. .++. .. ..+...+-|||+ |||.+-.. .++-+|+-+...| +.+.+.
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-------------~sI~vf~~d~~~g-~l~~~~ 285 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-------------NSISVFDLDPATG-TLTLVQ 285 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-------------TEEEEEEECTTTT-TEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC-------------CEEEEEEEecCCC-ceEEEE
Confidence 655333445432 2322 11 223234567886 66655322 1566777532212 343322
Q ss_pred C----CCCCccceeeeEECCCCceEEeCCC
Q 048136 394 P----SDIPRMYHSVANLLPDGRVFVGGSN 419 (559)
Q Consensus 394 ~----~~~~R~yhs~a~llpdG~Vlv~GG~ 419 (559)
. ...||. ..+.|||+.+++++.
T Consensus 286 ~~~~~G~~Pr~----~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 286 TVPTGGKFPRH----FAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEESSSSEEE----EEE-TTSSEEEEEET
T ss_pred EEeCCCCCccE----EEEeCCCCEEEEEec
Confidence 2 334662 345799997776654
No 52
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.49 E-value=4 Score=42.96 Aligned_cols=246 Identities=13% Similarity=0.084 Sum_probs=113.4
Q ss_pred eeEEEeCCCCC--EEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCC--CeecCCCccc-cccccceEE
Q 048136 101 HSVFYNVNTLQ--VTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTC--DWTEYPTALK-DGRWYATQA 175 (559)
Q Consensus 101 ~~~~yDp~t~~--w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~--~W~~~~~~m~-~~R~y~s~~ 175 (559)
...++|+.+++ |+.-. ... ..+...+.++++|+..+. ..+..+|+. +. .|+.-...-. ..+...+.+
T Consensus 116 ~l~ald~~tG~~~W~~~~--~~~-~~~~p~v~~~~v~v~~~~----g~l~a~d~~-tG~~~W~~~~~~~~~~~~~~~sp~ 187 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKL--SSE-VLSPPLVANGLVVVRTND----GRLTALDAA-TGERLWTYSRVTPALTLRGSASPV 187 (377)
T ss_pred EEEEEECCCCcEeeeecc--Cce-eecCCEEECCEEEEECCC----CeEEEEEcC-CCceeeEEccCCCceeecCCCCCE
Confidence 46778887765 65321 111 112234457777775432 468899987 44 4864321000 113233344
Q ss_pred EccCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec-CcEEEeeCCCCe-
Q 048136 176 LLADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN-NRSILLDPRANY- 252 (559)
Q Consensus 176 ~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg-~~~e~yDp~t~~- 252 (559)
+. ++.+|+ |..++ .+-.+ +++++ ..|...........+..........-+..+++||+... ....+||+++++
T Consensus 188 ~~-~~~v~~-~~~~g-~v~ald~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 188 IA-DGGVLV-GFAGG-KLVALDLQTGQ-PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV 263 (377)
T ss_pred EE-CCEEEE-ECCCC-EEEEEEccCCC-EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE
Confidence 44 666554 43322 22223 44442 12432111100000000000000111235888888753 467889998764
Q ss_pred -EEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCce
Q 048136 253 -VLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVW 331 (559)
Q Consensus 253 -W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W 331 (559)
|.... + .+ ..-++ .+++||+.... ..+.++|..+....|
T Consensus 264 ~W~~~~---~----~~---~~p~~------------~~~~vyv~~~~------------------G~l~~~d~~tG~~~W 303 (377)
T TIGR03300 264 LWKRDA---S----SY---QGPAV------------DDNRLYVTDAD------------------GVVVALDRRSGSELW 303 (377)
T ss_pred EEeecc---C----Cc---cCceE------------eCCEEEEECCC------------------CeEEEEECCCCcEEE
Confidence 54321 1 01 11111 37888887521 234567766544678
Q ss_pred eeecCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCC
Q 048136 332 TTEKMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDG 411 (559)
Q Consensus 332 ~~~~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG 411 (559)
+...+... ... ..++.+++||+.+ .+ | .+.++|+++.+- .|+.- ..... +.+. -++.|+
T Consensus 304 ~~~~~~~~-~~s-sp~i~g~~l~~~~-~~-G------------~l~~~d~~tG~~-~~~~~--~~~~~-~~~s-p~~~~~ 362 (377)
T TIGR03300 304 KNDELKYR-QLT-APAVVGGYLVVGD-FE-G------------YLHWLSREDGSF-VARLK--TDGSG-IASP-PVVVGD 362 (377)
T ss_pred ccccccCC-ccc-cCEEECCEEEEEe-CC-C------------EEEEEECCCCCE-EEEEE--cCCCc-cccC-CEEECC
Confidence 77544322 222 2234577777742 21 2 467788876521 34321 11111 1222 223488
Q ss_pred ceEEeCCC
Q 048136 412 RVFVGGSN 419 (559)
Q Consensus 412 ~Vlv~GG~ 419 (559)
+||+.+.+
T Consensus 363 ~l~v~~~d 370 (377)
T TIGR03300 363 GLLVQTRD 370 (377)
T ss_pred EEEEEeCC
Confidence 88877653
No 53
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.36 E-value=0.92 Score=48.28 Aligned_cols=203 Identities=14% Similarity=0.137 Sum_probs=109.4
Q ss_pred ccceeeEEEeCCCCCE-EeCc----cCC-CcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccc
Q 048136 97 DCWCHSVFYNVNTLQV-TPLK----VIT-DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRW 170 (559)
Q Consensus 97 ~~~~~~~~yDp~t~~w-~~~~----~~~-~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~ 170 (559)
|.+.++.+||.++... +.+. +.+ ..||. .|+.+++.|+.. +.+.+||-. +.. ... . +...--
T Consensus 87 D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~-----~d~t~l~s~sDd---~v~k~~d~s-~a~-v~~-~-l~~htD 154 (487)
T KOG0310|consen 87 DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSP-----QDNTMLVSGSDD---KVVKYWDLS-TAY-VQA-E-LSGHTD 154 (487)
T ss_pred CCcCcEEEeccccHHHHHHHhhccCceeEEEecc-----cCCeEEEecCCC---ceEEEEEcC-CcE-EEE-E-ecCCcc
Confidence 4456789999554221 1111 111 12333 588999999862 456677765 443 221 1 322211
Q ss_pred cc--eEEEccCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEE-ecCcEEEe
Q 048136 171 YA--TQALLADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIF-ANNRSILL 246 (559)
Q Consensus 171 y~--s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~-Gg~~~e~y 246 (559)
|- +...=.++.+++.||.++ .+..| .+.. ..| +..+.... . --.+..+++|.+++. ||+++-+|
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg-~vrl~DtR~~--~~~--v~elnhg~------p-Ve~vl~lpsgs~iasAgGn~vkVW 222 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDG-KVRLWDTRSL--TSR--VVELNHGC------P-VESVLALPSGSLIASAGGNSVKVW 222 (487)
T ss_pred eeEeeccccCCCeEEEecCCCc-eEEEEEeccC--Cce--eEEecCCC------c-eeeEEEcCCCCEEEEcCCCeEEEE
Confidence 11 122223678999999986 35666 3332 113 23322110 0 012455678777665 67899999
Q ss_pred eCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecC
Q 048136 247 DPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTS 326 (559)
Q Consensus 247 Dp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~ 326 (559)
|..++.- .+..|- + +.-+...|.+. -++.=++.||.+. .+-.||.+
T Consensus 223 Dl~~G~q--ll~~~~----~--H~KtVTcL~l~--------s~~~rLlS~sLD~-----------------~VKVfd~t- 268 (487)
T KOG0310|consen 223 DLTTGGQ--LLTSMF----N--HNKTVTCLRLA--------SDSTRLLSGSLDR-----------------HVKVFDTT- 268 (487)
T ss_pred EecCCce--ehhhhh----c--ccceEEEEEee--------cCCceEeeccccc-----------------ceEEEEcc-
Confidence 9987652 233222 1 12344444442 2456778888762 23456633
Q ss_pred CCCceeee-cCCCCcccccEEEeeCCeEEEEcCcC
Q 048136 327 PDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAE 360 (559)
Q Consensus 327 ~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~ 360 (559)
.|... .|.++---.+..+-||++..|+|+.+
T Consensus 269 ---~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 269 ---NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred ---ceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 57776 55554433445677899999999875
No 54
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.22 E-value=3.6 Score=40.77 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=65.3
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcE-EEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCC
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNL-ISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADG 180 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i-~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG 180 (559)
..+||+.+++....-.... ........+||+. |++++. .+.+.+||.. +.+.... +.....-...+..++|
T Consensus 13 v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~---~~~v~~~d~~-~~~~~~~---~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 13 ISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASD---SDTIQVIDLA-TGEVIGT---LPSGPDPELFALHPNG 84 (300)
T ss_pred EEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECC---CCeEEEEECC-CCcEEEe---ccCCCCccEEEECCCC
Confidence 5667777665433221111 1223445678874 566553 2578999988 6665431 1111111234455677
Q ss_pred cEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC---cEEEeeCCCCeEE
Q 048136 181 SFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN---RSILLDPRANYVL 254 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~---~~e~yDp~t~~W~ 254 (559)
+.+.+.+.....+.+| ..+.+ ....+.... .-..+...++|++++++.. ....||..+.+-.
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~~-----~~~~~~~~~-------~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETRK-----VLAEIPVGV-------EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCe-----EEeEeeCCC-------CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 7444433333355666 43321 111110000 0112345679998888753 2456788776543
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.21 E-value=3.1 Score=39.91 Aligned_cols=132 Identities=15% Similarity=0.108 Sum_probs=63.7
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCcccc-ccccceEEEccCC
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKD-GRWYATQALLADG 180 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~-~R~y~s~~~L~dG 180 (559)
..+||..+++-......+..........++++.+++++. + ..+.+||.. +.+.... +.. ...-.+....+++
T Consensus 33 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~--~~i~i~~~~-~~~~~~~---~~~~~~~i~~~~~~~~~ 105 (289)
T cd00200 33 IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-D--KTIRLWDLE-TGECVRT---LTGHTSYVSSVAFSPDG 105 (289)
T ss_pred EEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-C--CeEEEEEcC-cccceEE---EeccCCcEEEEEEcCCC
Confidence 456776655422211112222223345567878888876 2 578899987 4322111 111 1112234445567
Q ss_pred cEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEeeCCCCe
Q 048136 181 SFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLDPRANY 252 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t~~ 252 (559)
++++.++.+ ..+.+| ..+.+ . ...+. ... ..-......+++++++.+. ..+.+||..+++
T Consensus 106 ~~~~~~~~~-~~i~~~~~~~~~---~--~~~~~-~~~-----~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 106 RILSSSSRD-KTIKVWDVETGK---C--LTTLR-GHT-----DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred CEEEEecCC-CeEEEEECCCcE---E--EEEec-cCC-----CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 788777744 345566 43221 1 11111 000 0011223344677777664 567889987654
No 56
>PRK13684 Ycf48-like protein; Provisional
Probab=95.02 E-value=5.3 Score=41.68 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=42.5
Q ss_pred CCceeeecCCCC---cccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCC-CCCCcccee
Q 048136 328 DPVWTTEKMPTP---RVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAP-SDIPRMYHS 403 (559)
Q Consensus 328 ~~~W~~~~M~~~---R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~-~~~~R~yhs 403 (559)
..+|+...++.. ....+....++++++++|... .+|- ..+.|++|+.+.. ...+..+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G----------------~v~~-S~d~G~tW~~~~~~~~~~~~~~~ 307 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG----------------TLLV-SKDGGKTWEKDPVGEEVPSNFYK 307 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEcCCC----------------eEEE-eCCCCCCCeECCcCCCCCcceEE
Confidence 468997644422 122323456688999887532 1221 2355669998753 333434443
Q ss_pred eeEECCCCceEEeCCC
Q 048136 404 VANLLPDGRVFVGGSN 419 (559)
Q Consensus 404 ~a~llpdG~Vlv~GG~ 419 (559)
.+...++++|++|..
T Consensus 308 -~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 308 -IVFLDPEKGFVLGQR 322 (334)
T ss_pred -EEEeCCCceEEECCC
Confidence 445578888888864
No 57
>PF13854 Kelch_5: Kelch motif
Probab=94.98 E-value=0.055 Score=38.19 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=28.2
Q ss_pred CCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCC
Q 048136 336 MPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSK 383 (559)
Q Consensus 336 M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t 383 (559)
+|.+|..|+++ +.+++|||.||... . ......++.+||..+
T Consensus 1 ~P~~R~~hs~~-~~~~~iyi~GG~~~-~-----~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAV-VVGNNIYIFGGYSG-N-----NNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEE-EECCEEEEEcCccC-C-----CCCEECcEEEEECCC
Confidence 47899999755 55999999999872 1 112233677777654
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.96 E-value=1.4 Score=46.97 Aligned_cols=128 Identities=16% Similarity=0.210 Sum_probs=69.6
Q ss_pred eEEEeCCCCCEEeCccC--CC-cccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCC-CeecCCCccccccccceEEEc
Q 048136 102 SVFYNVNTLQVTPLKVI--TD-TWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTC-DWTEYPTALKDGRWYATQALL 177 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~--~~-~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~-~W~~~~~~m~~~R~y~s~~~L 177 (559)
...||..+... +.... ++ .+|.. ..-.++.|+++||+ || .++.||.. +. .|.. . ++++----.++.|
T Consensus 135 ~k~~d~s~a~v-~~~l~~htDYVR~g~-~~~~~~hivvtGsY-Dg--~vrl~DtR-~~~~~v~--e-lnhg~pVe~vl~l 205 (487)
T KOG0310|consen 135 VKYWDLSTAYV-QAELSGHTDYVRCGD-ISPANDHIVVTGSY-DG--KVRLWDTR-SLTSRVV--E-LNHGCPVESVLAL 205 (487)
T ss_pred EEEEEcCCcEE-EEEecCCcceeEeec-cccCCCeEEEecCC-Cc--eEEEEEec-cCCceeE--E-ecCCCceeeEEEc
Confidence 45666666554 32222 22 35543 33457889999999 44 79999988 55 4432 2 5554444567889
Q ss_pred cCCcEEEEcCCCCCceeEEcCC-CCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEeeCCC
Q 048136 178 ADGSFLIFGGRDSFSYEYIPAE-RTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLDPRA 250 (559)
Q Consensus 178 ~dG~VyvvGG~~~~s~E~yP~~-~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t 250 (559)
+.|.+++.-|- +++.+|..+ + ......+.+. .-.-.+..+..++.-++.|+ +++-+||..+
T Consensus 206 psgs~iasAgG--n~vkVWDl~~G----~qll~~~~~H------~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 206 PSGSLIASAGG--NSVKVWDLTTG----GQLLTSMFNH------NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred CCCCEEEEcCC--CeEEEEEecCC----ceehhhhhcc------cceEEEEEeecCCceEeecccccceEEEEccc
Confidence 88777666443 456777322 2 2222222110 00111222233566666665 6788999543
No 59
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.95 E-value=4.2 Score=40.14 Aligned_cols=225 Identities=17% Similarity=0.142 Sum_probs=109.6
Q ss_pred cceeeEEEeCCCCCEEeCccC--CCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEE
Q 048136 98 CWCHSVFYNVNTLQVTPLKVI--TDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQA 175 (559)
Q Consensus 98 ~~~~~~~yDp~t~~w~~~~~~--~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~ 175 (559)
+..++.+||..+++=.|+... +..--.+..+-.||+++.+||. || .++++|-+ .-.-... ....----+++
T Consensus 59 ~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse-Dg--t~kIWdlR-~~~~qR~---~~~~spVn~vv 131 (311)
T KOG0315|consen 59 GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE-DG--TVKIWDLR-SLSCQRN---YQHNSPVNTVV 131 (311)
T ss_pred cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC-Cc--eEEEEecc-Ccccchh---ccCCCCcceEE
Confidence 456789999988775555433 2111223445679999999997 44 67888876 3111110 11111112233
Q ss_pred EccCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecCcEEEe--eCCCCe
Q 048136 176 LLADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRSILL--DPRANY 252 (559)
Q Consensus 176 ~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~y--Dp~t~~ 252 (559)
.-++.-=+++|- .+..+.+| -..+. .-....|- .. -.-....+.+||+..+.+++..-+| +.-+++
T Consensus 132 lhpnQteLis~d-qsg~irvWDl~~~~--c~~~liPe--~~------~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 132 LHPNQTELISGD-QSGNIRVWDLGENS--CTHELIPE--DD------TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred ecCCcceEEeec-CCCcEEEEEccCCc--cccccCCC--CC------cceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence 333333333343 33345666 33331 11111221 10 0112356788999999888765444 333322
Q ss_pred EEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCcee
Q 048136 253 VLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWT 332 (559)
Q Consensus 253 W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~ 332 (559)
-...+-|+..-.. .-+.....++- .++|.++.-+++ ++|.+++..+ -..
T Consensus 201 ~~s~l~P~~k~~a-h~~~il~C~lS----------Pd~k~lat~ssd-----------------ktv~iwn~~~---~~k 249 (311)
T KOG0315|consen 201 TASELEPVHKFQA-HNGHILRCLLS----------PDVKYLATCSSD-----------------KTVKIWNTDD---FFK 249 (311)
T ss_pred ccccceEhhheec-ccceEEEEEEC----------CCCcEEEeecCC-----------------ceEEEEecCC---cee
Confidence 1112222211000 00011122221 266766665554 3344444331 122
Q ss_pred ee-cC-CCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCC
Q 048136 333 TE-KM-PTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKP 384 (559)
Q Consensus 333 ~~-~M-~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~ 384 (559)
.+ .+ ...|..-+++--.||+-+|.|+.+. .+.+||++.+
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~-------------~~rlW~~~~~ 290 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDH-------------TARLWDLSAG 290 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCC-------------ceeecccccC
Confidence 22 22 1235555566667999999987652 6788998887
No 60
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=94.78 E-value=0.7 Score=45.23 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=83.6
Q ss_pred eeEEEeCCCCCEEeCccCCC--cccccCeecCCCcEEEEcCCCCCC--CeEEEEeCCCCCCeec-CCCcccccc----cc
Q 048136 101 HSVFYNVNTLQVTPLKVITD--TWCSSGGLDVNGNLISTGGFLGGS--RTTRYLWGCPTCDWTE-YPTALKDGR----WY 171 (559)
Q Consensus 101 ~~~~yDp~t~~w~~~~~~~~--~~c~~~~~l~dG~i~v~GG~~~g~--~~v~~ydp~~t~~W~~-~~~~m~~~R----~y 171 (559)
.+++|+..+++|+.+..... ..... .+..||.||-+.-...+. ..+-.||.. +.+|.+ ++ ++..+ .+
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~-~E~f~~~i~--~P~~~~~~~~~ 146 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVS-SERFKEFIP--LPCGNSDSVDY 146 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcc-cceEeeeee--cCccccccccc
Confidence 37899999999999874321 11222 556799888776432211 268889999 899995 53 33322 24
Q ss_pred ceEEEccCCcEEEEcCCCC-CceeEE-cC-CCCCCCcceecccccc-ccccccCCccceEEEeeCCcEEEEecC---c-E
Q 048136 172 ATQALLADGSFLIFGGRDS-FSYEYI-PA-ERTENAYSIPFQFLRD-TYDVLENNLYPFVYLVPDGNLYIFANN---R-S 243 (559)
Q Consensus 172 ~s~~~L~dG~VyvvGG~~~-~s~E~y-P~-~~~~~~w~~~~p~l~~-~~d~~~~~~yp~~~~l~~G~iyv~Gg~---~-~ 243 (559)
.....+ +|++.++.-... ...|+| -+ .+. ..|.+...+... ..+ .....+ .....-+|+|.+.... . +
T Consensus 147 ~~L~~~-~G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~-~~~~~~-~~~~~~~g~I~~~~~~~~~~~~ 222 (230)
T TIGR01640 147 LSLINY-KGKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPD-LVDDNF-LSGFTDKGEIVLCCEDENPFYI 222 (230)
T ss_pred eEEEEE-CCEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcCcchhh-hhhhee-EeEEeeCCEEEEEeCCCCceEE
Confidence 456667 699888876432 347888 32 211 247664433210 000 000111 2345668998887653 2 6
Q ss_pred EEeeCCCC
Q 048136 244 ILLDPRAN 251 (559)
Q Consensus 244 e~yDp~t~ 251 (559)
..||+++|
T Consensus 223 ~~y~~~~~ 230 (230)
T TIGR01640 223 FYYNVGEN 230 (230)
T ss_pred EEEeccCC
Confidence 78888775
No 61
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.20 E-value=6.4 Score=38.94 Aligned_cols=248 Identities=14% Similarity=0.105 Sum_probs=120.1
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceE-EEccCC
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQ-ALLADG 180 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~-~~L~dG 180 (559)
..+|...|+....--.-.+..-..-...+|++.++++|+ ..+++||-. ++.=.++.. ....+-.-++ ..-.||
T Consensus 22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~----qhvRlyD~~-S~np~Pv~t-~e~h~kNVtaVgF~~dg 95 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN----QHVRLYDLN-SNNPNPVAT-FEGHTKNVTAVGFQCDG 95 (311)
T ss_pred eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC----CeeEEEEcc-CCCCCceeE-EeccCCceEEEEEeecC
Confidence 455555565544321111221122335679999999987 589999987 544222211 1122222222 233388
Q ss_pred cEEEEcCCCCCceeEEcCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC--cEEEeeCCCCeEEEECC
Q 048136 181 SFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN--RSILLDPRANYVLREYP 258 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~yP~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~--~~e~yDp~t~~W~~~~p 258 (559)
|-...||.++ ++.+|..... .-.+........ -.+++-|+--=++.|.+ .+.++|..++.-..+
T Consensus 96 rWMyTgseDg-t~kIWdlR~~--~~qR~~~~~spV---------n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-- 161 (311)
T KOG0315|consen 96 RWMYTGSEDG-TVKIWDLRSL--SCQRNYQHNSPV---------NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-- 161 (311)
T ss_pred eEEEecCCCc-eEEEEeccCc--ccchhccCCCCc---------ceEEecCCcceEEeecCCCcEEEEEccCCccccc--
Confidence 9998888775 4445511110 000001110000 01222333333334543 478999999976543
Q ss_pred CCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCcee----ee
Q 048136 259 PLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWT----TE 334 (559)
Q Consensus 259 ~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~----~~ 334 (559)
.||+.. .+....+++ .+|+.++.+- +. .+|+++++.. .+-. ..
T Consensus 162 liPe~~--~~i~sl~v~------------~dgsml~a~n-nk----------------G~cyvW~l~~--~~~~s~l~P~ 208 (311)
T KOG0315|consen 162 LIPEDD--TSIQSLTVM------------PDGSMLAAAN-NK----------------GNCYVWRLLN--HQTASELEPV 208 (311)
T ss_pred cCCCCC--cceeeEEEc------------CCCcEEEEec-CC----------------ccEEEEEccC--CCccccceEh
Confidence 355421 121222322 2677655442 21 3456666542 1111 11
Q ss_pred ---cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCC-CCccceeeeEECCC
Q 048136 335 ---KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSD-IPRMYHSVANLLPD 410 (559)
Q Consensus 335 ---~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~-~~R~yhs~a~llpd 410 (559)
.|..+ .......-||+|.++.-++++ ++.+|+-+.- +..--.+. ..|-- =-+++.-|
T Consensus 209 ~k~~ah~~-~il~C~lSPd~k~lat~ssdk-------------tv~iwn~~~~----~kle~~l~gh~rWv-Wdc~FS~d 269 (311)
T KOG0315|consen 209 HKFQAHNG-HILRCLLSPDVKYLATCSSDK-------------TVKIWNTDDF----FKLELVLTGHQRWV-WDCAFSAD 269 (311)
T ss_pred hheecccc-eEEEEEECCCCcEEEeecCCc-------------eEEEEecCCc----eeeEEEeecCCceE-EeeeeccC
Confidence 23332 223346779999999887653 6777776543 11000000 01111 12456679
Q ss_pred CceEEeCCCCC
Q 048136 411 GRVFVGGSNDN 421 (559)
Q Consensus 411 G~Vlv~GG~~~ 421 (559)
|+-+|.|+.++
T Consensus 270 g~YlvTassd~ 280 (311)
T KOG0315|consen 270 GEYLVTASSDH 280 (311)
T ss_pred ccEEEecCCCC
Confidence 99999999764
No 62
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.63 E-value=9.8 Score=39.15 Aligned_cols=90 Identities=7% Similarity=-0.096 Sum_probs=47.1
Q ss_pred eEEEeCC-CCCEEeCccCC--CcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCC-e-ecCCCccccccccceEEE
Q 048136 102 SVFYNVN-TLQVTPLKVIT--DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCD-W-TEYPTALKDGRWYATQAL 176 (559)
Q Consensus 102 ~~~yDp~-t~~w~~~~~~~--~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~-W-~~~~~~m~~~R~y~s~~~ 176 (559)
...|+.. +++++.+.... ..-| .-++.+||+.+.+..+. ...+.+||.. ++. . ..+.. +.....-++++.
T Consensus 59 i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~--~~~v~v~~~~-~~g~~~~~~~~-~~~~~~~~~~~~ 133 (330)
T PRK11028 59 VLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYN--ANCVSVSPLD-KDGIPVAPIQI-IEGLEGCHSANI 133 (330)
T ss_pred EEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcC--CCeEEEEEEC-CCCCCCCceee-ccCCCcccEeEe
Confidence 3456654 45565443221 1222 23456788866665542 3577888875 321 1 11111 222233455666
Q ss_pred ccCCcEEEEcCCCCCceeEE
Q 048136 177 LADGSFLIFGGRDSFSYEYI 196 (559)
Q Consensus 177 L~dG~VyvvGG~~~~s~E~y 196 (559)
-+||+.+.+.......+.+|
T Consensus 134 ~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 134 DPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCCCCEEEEeeCCCCEEEEE
Confidence 77887766666555667788
No 63
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.61 E-value=8.2 Score=38.17 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=67.3
Q ss_pred eEEEeCCCCCEEe-CccCCCcccccCeecCCCcEE-EEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccC
Q 048136 102 SVFYNVNTLQVTP-LKVITDTWCSSGGLDVNGNLI-STGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179 (559)
Q Consensus 102 ~~~yDp~t~~w~~-~~~~~~~~c~~~~~l~dG~i~-v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~d 179 (559)
..+||..+++... +...... ....+.++|+.+ +.++. + +.+.+||.. +.+- +.. +.....-.+.+..+|
T Consensus 55 v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~-~--~~l~~~d~~-~~~~--~~~-~~~~~~~~~~~~~~d 125 (300)
T TIGR03866 55 IQVIDLATGEVIGTLPSGPDP--ELFALHPNGKILYIANED-D--NLVTVIDIE-TRKV--LAE-IPVGVEPEGMAVSPD 125 (300)
T ss_pred EEEEECCCCcEEEeccCCCCc--cEEEECCCCCEEEEEcCC-C--CeEEEEECC-CCeE--EeE-eeCCCCcceEEECCC
Confidence 5678988877654 2221121 123455677754 44432 2 478999987 5432 111 222222234556678
Q ss_pred CcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccc-eEEEeeCCcEEEEec---CcEEEeeCCCCeEE
Q 048136 180 GSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYP-FVYLVPDGNLYIFAN---NRSILLDPRANYVL 254 (559)
Q Consensus 180 G~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp-~~~~l~~G~iyv~Gg---~~~e~yDp~t~~W~ 254 (559)
|++++++..+......| ..+. ......... ..+ .....++|+.+++++ ..+.+||.++++..
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~-----~~~~~~~~~--------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTY-----EIVDNVLVD--------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCC-----eEEEEEEcC--------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 99998877544333344 3322 111111110 011 233456887665443 45788999887654
No 64
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.63 E-value=13 Score=37.58 Aligned_cols=134 Identities=24% Similarity=0.227 Sum_probs=76.2
Q ss_pred eEEEeCCCCCEEeCccCC---CcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEcc
Q 048136 102 SVFYNVNTLQVTPLKVIT---DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLA 178 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~---~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~ 178 (559)
...+|+++.+.+..+... +.--...++..+|+|..+|-.. ---++||. ++.-+..+. +.+-.-.++|+-+
T Consensus 126 I~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G----~yGrLdPa-~~~i~vfpa--PqG~gpyGi~atp 198 (353)
T COG4257 126 IGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIG----AYGRLDPA-RNVISVFPA--PQGGGPYGICATP 198 (353)
T ss_pred eEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccc----cceecCcc-cCceeeecc--CCCCCCcceEECC
Confidence 578899999888665432 2233456778889999998431 01146776 554333221 2333345678888
Q ss_pred CCcEEEEc--CCCC-------CceeEEcCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEE--ecCcEEEee
Q 048136 179 DGSFLIFG--GRDS-------FSYEYIPAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIF--ANNRSILLD 247 (559)
Q Consensus 179 dG~VyvvG--G~~~-------~s~E~yP~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~--Gg~~~e~yD 247 (559)
||.|+... |.-- ...|++|..+ + + ..+ .-..+.-+-|++.+. |+.++.+||
T Consensus 199 dGsvwyaslagnaiaridp~~~~aev~p~P~---------~-~--~~g------sRriwsdpig~~wittwg~g~l~rfd 260 (353)
T COG4257 199 DGSVWYASLAGNAIARIDPFAGHAEVVPQPN---------A-L--KAG------SRRIWSDPIGRAWITTWGTGSLHRFD 260 (353)
T ss_pred CCcEEEEeccccceEEcccccCCcceecCCC---------c-c--ccc------ccccccCccCcEEEeccCCceeeEeC
Confidence 99999973 3210 1234442211 0 0 000 001233456777764 456788999
Q ss_pred CCCCeEEEECCCCCC
Q 048136 248 PRANYVLREYPPLPG 262 (559)
Q Consensus 248 p~t~~W~~~~p~mp~ 262 (559)
|.+.+|. +. +||+
T Consensus 261 Ps~~sW~-ey-pLPg 273 (353)
T COG4257 261 PSVTSWI-EY-PLPG 273 (353)
T ss_pred cccccce-ee-eCCC
Confidence 9999998 45 3664
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.62 E-value=15 Score=38.55 Aligned_cols=218 Identities=11% Similarity=0.073 Sum_probs=100.6
Q ss_pred eEEEeCCCCC--EEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCC--CeecCCCccccccccceEEEc
Q 048136 102 SVFYNVNTLQ--VTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTC--DWTEYPTALKDGRWYATQALL 177 (559)
Q Consensus 102 ~~~yDp~t~~--w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~--~W~~~~~~m~~~R~y~s~~~L 177 (559)
..+||+++++ |+.- .....+. +.++.++++|+.... ..+..+|+. +. .|+... ...- ..+. ++
T Consensus 77 v~a~d~~tG~~~W~~~--~~~~~~~-~p~v~~~~v~v~~~~----g~l~ald~~-tG~~~W~~~~---~~~~-~~~p-~v 143 (377)
T TIGR03300 77 VVALDAETGKRLWRVD--LDERLSG-GVGADGGLVFVGTEK----GEVIALDAE-DGKELWRAKL---SSEV-LSPP-LV 143 (377)
T ss_pred EEEEEccCCcEeeeec--CCCCccc-ceEEcCCEEEEEcCC----CEEEEEECC-CCcEeeeecc---Ccee-ecCC-EE
Confidence 5678887765 6532 1122222 334446666654332 478899986 44 486532 2111 1222 23
Q ss_pred cCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec-CcEEEeeCCCCe--E
Q 048136 178 ADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN-NRSILLDPRANY--V 253 (559)
Q Consensus 178 ~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg-~~~e~yDp~t~~--W 253 (559)
.+++||+..+. ..+-.+ +++++ ..|.......... ..... .-+..+|.+|+... ..+..+|+++++ |
T Consensus 144 ~~~~v~v~~~~--g~l~a~d~~tG~-~~W~~~~~~~~~~-----~~~~~-sp~~~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 144 ANGLVVVRTND--GRLTALDAATGE-RLWTYSRVTPALT-----LRGSA-SPVIADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ECCEEEEECCC--CeEEEEEcCCCc-eeeEEccCCCcee-----ecCCC-CCEEECCEEEEECCCCEEEEEEccCCCEee
Confidence 37787775442 123344 44442 2343221110000 00011 11234666654322 456788988764 6
Q ss_pred EEECCCCCCCCCcccC---CCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCc
Q 048136 254 LREYPPLPGGARNYPS---TSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPV 330 (559)
Q Consensus 254 ~~~~p~mp~~~~~~p~---~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~ 330 (559)
..... .+.+.....+ ..++.. ..+++||+.... ..+.+||+.+....
T Consensus 215 ~~~~~-~~~g~~~~~~~~~~~~~p~-----------~~~~~vy~~~~~------------------g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 215 EQRVA-LPKGRTELERLVDVDGDPV-----------VDGGQVYAVSYQ------------------GRVAALDLRSGRVL 264 (377)
T ss_pred eeccc-cCCCCCchhhhhccCCccE-----------EECCEEEEEEcC------------------CEEEEEECCCCcEE
Confidence 53221 1110000000 001111 136777775432 23456777654456
Q ss_pred eeeecCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEe
Q 048136 331 WTTEKMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTE 391 (559)
Q Consensus 331 W~~~~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~ 391 (559)
|+... .... ..++.+++||+.... | .+.++|+.+.+ ..|+.
T Consensus 265 W~~~~----~~~~-~p~~~~~~vyv~~~~--G------------~l~~~d~~tG~-~~W~~ 305 (377)
T TIGR03300 265 WKRDA----SSYQ-GPAVDDNRLYVTDAD--G------------VVVALDRRSGS-ELWKN 305 (377)
T ss_pred Eeecc----CCcc-CceEeCCEEEEECCC--C------------eEEEEECCCCc-EEEcc
Confidence 87651 1112 234568999986421 1 56888887652 15764
No 66
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.51 E-value=14 Score=37.94 Aligned_cols=138 Identities=12% Similarity=-0.025 Sum_probs=66.0
Q ss_pred eEEEeCCC-CCEEeCccCCCc-ccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccC
Q 048136 102 SVFYNVNT-LQVTPLKVITDT-WCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLAD 179 (559)
Q Consensus 102 ~~~yDp~t-~~w~~~~~~~~~-~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~d 179 (559)
...||..+ ++++.+...... ....-++-+||+.+.+|+.. ...+..|+.....+++.... ...+......+.-+|
T Consensus 14 I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~-~~~~~~p~~i~~~~~ 90 (330)
T PRK11028 14 IHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAE-SPLPGSPTHISTDHQ 90 (330)
T ss_pred EEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeee-ecCCCCceEEEECCC
Confidence 56777754 466655433211 11123445688866555542 25666777641345554321 222222234556678
Q ss_pred CcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccce-EEEeeCCcEEEEe---cCcEEEeeCCCC
Q 048136 180 GSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPF-VYLVPDGNLYIFA---NNRSILLDPRAN 251 (559)
Q Consensus 180 G~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~-~~~l~~G~iyv~G---g~~~e~yDp~t~ 251 (559)
|+.+.+.......+-+| ..++. ........... ...|+ +.+.++|+.+++. ...+.+||..++
T Consensus 91 g~~l~v~~~~~~~v~v~~~~~~g--~~~~~~~~~~~-------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 91 GRFLFSASYNANCVSVSPLDKDG--IPVAPIQIIEG-------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCEEEEEEcCCCeEEEEEECCCC--CCCCceeeccC-------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 87666555444455566 33221 00000110000 11233 3355677655443 367899998764
No 67
>PF13854 Kelch_5: Kelch motif
Probab=92.40 E-value=0.13 Score=36.25 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.2
Q ss_pred cccccccceEEEccCCcEEEEcCCCC
Q 048136 165 LKDGRWYATQALLADGSFLIFGGRDS 190 (559)
Q Consensus 165 m~~~R~y~s~~~L~dG~VyvvGG~~~ 190 (559)
++.+|+.|++++. +++|||.||.+.
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~ 25 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSG 25 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccC
Confidence 3578999999988 799999999863
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.96 E-value=16 Score=42.82 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=109.2
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEeCCCCC--CeecC--CC-ccccccccceEEEcc-CCcEEEEcCCCCCceeEE-cC
Q 048136 126 GGLDVNGNLISTGGFLGGSRTTRYLWGCPTC--DWTEY--PT-ALKDGRWYATQALLA-DGSFLIFGGRDSFSYEYI-PA 198 (559)
Q Consensus 126 ~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~--~W~~~--~~-~m~~~R~y~s~~~L~-dG~VyvvGG~~~~s~E~y-P~ 198 (559)
..+.+||+++++||.. ..+.+||.. .. ..... +. .+.....-.+.+..+ ++..++.|+.++ ++.+| ..
T Consensus 489 i~fs~dg~~latgg~D---~~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg-~v~lWd~~ 563 (793)
T PLN00181 489 IGFDRDGEFFATAGVN---KKIKIFECE-SIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEG-VVQVWDVA 563 (793)
T ss_pred EEECCCCCEEEEEeCC---CEEEEEECC-cccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCC-eEEEEECC
Confidence 3456799999999973 578889864 21 11110 00 011111011122212 466777777653 56667 33
Q ss_pred CCCCCCcceeccccccccccccCCccceEEEe-eCCcEEEEecC--cEEEeeCCCCeEEEECCCCCCCCCcccCCCceee
Q 048136 199 ERTENAYSIPFQFLRDTYDVLENNLYPFVYLV-PDGNLYIFANN--RSILLDPRANYVLREYPPLPGGARNYPSTSTSVL 275 (559)
Q Consensus 199 ~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l-~~G~iyv~Gg~--~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~ 275 (559)
++ .....+ ....+ ..+ .+... .+|.+++.|+. .+.+||..++.-...+. . . . .-.++.
T Consensus 564 ~~-----~~~~~~-~~H~~----~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~--~-~--~v~~v~ 624 (793)
T PLN00181 564 RS-----QLVTEM-KEHEK----RVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---T--K-A--NICCVQ 624 (793)
T ss_pred CC-----eEEEEe-cCCCC----CEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---c--C-C--CeEEEE
Confidence 22 111111 11100 011 11122 37888888864 57889988765332221 0 0 0 011222
Q ss_pred cccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeeecCCCCcccccEEEeeCCeEEE
Q 048136 276 LPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTEKMPTPRVMSDGVLLPTGDVLL 355 (559)
Q Consensus 276 lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~~M~~~R~~~~av~LpdG~V~v 355 (559)
.. ..+++++++|+.+ ..+..||+...........-.. .....+...++..++
T Consensus 625 ~~---------~~~g~~latgs~d-----------------g~I~iwD~~~~~~~~~~~~~h~--~~V~~v~f~~~~~lv 676 (793)
T PLN00181 625 FP---------SESGRSLAFGSAD-----------------HKVYYYDLRNPKLPLCTMIGHS--KTVSYVRFVDSSTLV 676 (793)
T ss_pred Ee---------CCCCCEEEEEeCC-----------------CeEEEEECCCCCccceEecCCC--CCEEEEEEeCCCEEE
Confidence 11 0257888888765 2355677653111111111011 111234455888888
Q ss_pred EcCcCCCCCCccCCCCCCcccEEEeCCCCC-CCeEEecCCCCCCccceeeeEECCCCceEEeCCCCC
Q 048136 356 INGAELGSAGWKDADKPCFKPLLYKPSKPP-GSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDN 421 (559)
Q Consensus 356 vGG~~~g~~g~~~~~~~~~~~e~YDP~t~~-g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~ 421 (559)
.++.+. ++.+||..+.. +..|..+..............+.++|+.+++|+.+.
T Consensus 677 s~s~D~-------------~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 677 SSSTDN-------------TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred EEECCC-------------EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 887541 67899986531 012322211110011112345678999999998643
No 69
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=91.89 E-value=0.22 Score=53.23 Aligned_cols=126 Identities=9% Similarity=0.001 Sum_probs=79.4
Q ss_pred ccccCeecCCC--cEEEEcCCCCCC---CeEEEEeCCCCCCeecCCC--ccccccccceEEEcc-CCcEEEEcCCCC---
Q 048136 122 WCSSGGLDVNG--NLISTGGFLGGS---RTTRYLWGCPTCDWTEYPT--ALKDGRWYATQALLA-DGSFLIFGGRDS--- 190 (559)
Q Consensus 122 ~c~~~~~l~dG--~i~v~GG~~~g~---~~v~~ydp~~t~~W~~~~~--~m~~~R~y~s~~~L~-dG~VyvvGG~~~--- 190 (559)
+...+++.-++ .||+.||+ +|. .+.+.|.-. .+.|+.... ..+..|..|-++.-. ..|+|.+|-.-.
T Consensus 261 RgGHQMV~~~~~~CiYLYGGW-dG~~~l~DFW~Y~v~-e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~ 338 (723)
T KOG2437|consen 261 RGGHQMVIDVQTECVYLYGGW-DGTQDLADFWAYSVK-ENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSV 338 (723)
T ss_pred cCcceEEEeCCCcEEEEecCc-ccchhHHHHHhhcCC-cceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccc
Confidence 44445555555 89999999 564 467889888 889998632 256678888776431 248999986422
Q ss_pred -------CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCc--EEEEecCc----------EEEeeCCC
Q 048136 191 -------FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGN--LYIFANNR----------SILLDPRA 250 (559)
Q Consensus 191 -------~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~--iyv~Gg~~----------~e~yDp~t 250 (559)
.....| -.++ .|. .+.+-. ..|..|.+.|-+..++...| |||+||+. ...||.+.
T Consensus 339 r~~~s~RsDfW~FDi~~~---~W~-~ls~dt-~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~ 413 (723)
T KOG2437|consen 339 RNSKSLRSDFWRFDIDTN---TWM-LLSEDT-AADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQC 413 (723)
T ss_pred ccccccccceEEEecCCc---eeE-Eecccc-cccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCC
Confidence 123444 3333 353 344422 22334556666666666555 99999963 34678888
Q ss_pred CeEE
Q 048136 251 NYVL 254 (559)
Q Consensus 251 ~~W~ 254 (559)
..|.
T Consensus 414 ~~w~ 417 (723)
T KOG2437|consen 414 QTWK 417 (723)
T ss_pred ccHH
Confidence 8886
No 70
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=91.87 E-value=5.6 Score=38.78 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=79.8
Q ss_pred CCcEEEEecCcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccc
Q 048136 232 DGNLYIFANNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKR 311 (559)
Q Consensus 232 ~G~iyv~Gg~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 311 (559)
||-|.+.......++||.|++|. .+|+.+. +..++... ...+...+ .. .+=||+.+......
T Consensus 5 nGLlc~~~~~~~~V~NP~T~~~~-~LP~~~~-~~~~~~~~-~~~~G~d~--~~---~~YKVv~~~~~~~~---------- 66 (230)
T TIGR01640 5 DGLICFSYGKRLVVWNPSTGQSR-WLPTPKS-RRSNKESD-TYFLGYDP--IE---KQYKVLCFSDRSGN---------- 66 (230)
T ss_pred ceEEEEecCCcEEEECCCCCCEE-ecCCCCC-cccccccc-eEEEeecc--cC---CcEEEEEEEeecCC----------
Confidence 55554444456678999999998 6876442 11121111 11121111 11 23477766543110
Q ss_pred cccccCceEEEEecCCCCceeee-cCCCC-cccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeE
Q 048136 312 LVPALDDCARMVVTSPDPVWTTE-KMPTP-RVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRF 389 (559)
Q Consensus 312 ~~~a~~s~~~~d~~~~~~~W~~~-~M~~~-R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W 389 (559)
.....+++|++.+ ++|... ..+.. .....+ ++.||.||.+.-...+ .+...+..||-++. +|
T Consensus 67 --~~~~~~~Vys~~~--~~Wr~~~~~~~~~~~~~~~-v~~~G~lyw~~~~~~~--------~~~~~IvsFDl~~E---~f 130 (230)
T TIGR01640 67 --RNQSEHQVYTLGS--NSWRTIECSPPHHPLKSRG-VCINGVLYYLAYTLKT--------NPDYFIVSFDVSSE---RF 130 (230)
T ss_pred --CCCccEEEEEeCC--CCccccccCCCCccccCCe-EEECCEEEEEEEECCC--------CCcEEEEEEEcccc---eE
Confidence 1124688999985 799986 32211 111123 4569999998643211 11125888999999 99
Q ss_pred EecCCCCCCcc-ce-eeeEECCCCceEEeCC
Q 048136 390 TELAPSDIPRM-YH-SVANLLPDGRVFVGGS 418 (559)
Q Consensus 390 t~~~~~~~~R~-yh-s~a~llpdG~Vlv~GG 418 (559)
+..-++|..+. .+ ...+..-+|++-++..
T Consensus 131 ~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 131 KEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred eeeeecCccccccccceEEEEECCEEEEEEe
Confidence 95223333332 11 1223333688766654
No 71
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=90.13 E-value=19 Score=37.82 Aligned_cols=115 Identities=22% Similarity=0.172 Sum_probs=69.7
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccc-cccccceEEEccCCcEEEEcCCCCCceeEE-cCCCCCCC
Q 048136 127 GLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALK-DGRWYATQALLADGSFLIFGGRDSFSYEYI-PAERTENA 204 (559)
Q Consensus 127 ~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~-~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~ 204 (559)
.+-++|+.++.|+- ..+++++|+. +.+ ++.. +. +..|-.+++--+||+.++.|-.+ .++-+| |+++.
T Consensus 122 ~fsp~g~~l~tGsG---D~TvR~WD~~-TeT--p~~t-~KgH~~WVlcvawsPDgk~iASG~~d-g~I~lwdpktg~--- 190 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSG---DTTVRLWDLD-TET--PLFT-CKGHKNWVLCVAWSPDGKKIASGSKD-GSIRLWDPKTGQ--- 190 (480)
T ss_pred EecCCCceEEecCC---CceEEeeccC-CCC--ccee-ecCCccEEEEEEECCCcchhhccccC-CeEEEecCCCCC---
Confidence 34568888888863 4789999998 543 1111 22 45688888888999998877654 457778 88763
Q ss_pred cceecccccccccc-ccCCccceEEEeeCCcEEEEec--CcEEEeeCCCCeEEE
Q 048136 205 YSIPFQFLRDTYDV-LENNLYPFVYLVPDGNLYIFAN--NRSILLDPRANYVLR 255 (559)
Q Consensus 205 w~~~~p~l~~~~d~-~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t~~W~~ 255 (559)
...-+ +...... ...-+.| .++.+..+.++.+. .++.+||...++-.+
T Consensus 191 -~~g~~-l~gH~K~It~Lawep-~hl~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 191 -QIGRA-LRGHKKWITALAWEP-LHLVPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred -ccccc-ccCcccceeEEeecc-cccCCCccceecccCCCCEEEEEccCceEEE
Confidence 11111 1111100 0001112 34567777777664 468889988877553
No 72
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.67 E-value=35 Score=35.92 Aligned_cols=261 Identities=13% Similarity=0.082 Sum_probs=131.0
Q ss_pred eEEEeCCCCC--EEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCC-CCCeecCCCccccccccceEEEcc
Q 048136 102 SVFYNVNTLQ--VTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCP-TCDWTEYPTALKDGRWYATQALLA 178 (559)
Q Consensus 102 ~~~yDp~t~~--w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~-t~~W~~~~~~m~~~R~y~s~~~L~ 178 (559)
...+|+.+.+ |+.........+++.....||+||+-... + ...+||..+ +..|..-... . .+|... ++..
T Consensus 80 i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~--g--~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~ 152 (370)
T COG1520 80 IFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD--G--KLYALDASTGTLVWSRNVGG-S-PYYASP-PVVG 152 (370)
T ss_pred EEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc--c--eEEEEECCCCcEEEEEecCC-C-eEEecC-cEEc
Confidence 4567887776 76543322345667777779998876543 2 788999842 4568865432 2 565444 4455
Q ss_pred CCcEEEEcCCCCCceeEE-cCCCCCCCcceeccc-cccccccccCCccceEEEeeCCcEEEEec--C-cEEEeeCCCC--
Q 048136 179 DGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQF-LRDTYDVLENNLYPFVYLVPDGNLYIFAN--N-RSILLDPRAN-- 251 (559)
Q Consensus 179 dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~-l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~-~~e~yDp~t~-- 251 (559)
|+.||+... ++ .+-.. +.+++ ..|....+. +... ........+|.+|+-.. . ...-+|+.++
T Consensus 153 ~~~v~~~s~-~g-~~~al~~~tG~-~~W~~~~~~~~~~~--------~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 153 DGTVYVGTD-DG-HLYALNADTGT-LKWTYETPAPLSLS--------IYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred CcEEEEecC-CC-eEEEEEccCCc-EEEEEecCCccccc--------cccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 899998751 11 11122 33332 235432221 1110 01111245778887644 2 3566788665
Q ss_pred eEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCce
Q 048136 252 YVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVW 331 (559)
Q Consensus 252 ~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W 331 (559)
.|.+.. ..+ ..++... ..| ....+.|++.|+.-.+.+ .....++|..+....|
T Consensus 222 ~w~~~~-~~~-----~~~~~~~-~~~--------~~~~~~v~v~~~~~~~~~------------~g~~~~l~~~~G~~~W 274 (370)
T COG1520 222 KWSQKV-SQT-----IGRTAIS-TTP--------AVDGGPVYVDGGVYAGSY------------GGKLLCLDADTGELIW 274 (370)
T ss_pred eeeeee-ecc-----cCccccc-ccc--------cccCceEEECCcEEEEec------------CCeEEEEEcCCCceEE
Confidence 455211 111 1111110 011 124778888887311111 1235677776666789
Q ss_pred eee-cCC--CCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCC-eEEecCCCCCCccceeeeEE
Q 048136 332 TTE-KMP--TPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGS-RFTELAPSDIPRMYHSVANL 407 (559)
Q Consensus 332 ~~~-~M~--~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~-~Wt~~~~~~~~R~yhs~a~l 407 (559)
+.. ++. ..+...+...--||++|+..-.... .....+.++++..+... .|.....- + +......
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~w~~~~~g---~-~~~~~~~ 342 (370)
T COG1520 275 SFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDG--------RGSGSLYALADVPGGTLLKWSYPVGG---G-YSLSTVA 342 (370)
T ss_pred EEecccEeccCCeeEEeecCCCccEEEEEecccc--------ccccceEEEeccCCCeeEEEEEeCCC---c-eecccce
Confidence 886 532 2233332333359999997543311 01235667777333222 67654332 2 2223334
Q ss_pred CCCCceEEeCCC
Q 048136 408 LPDGRVFVGGSN 419 (559)
Q Consensus 408 lpdG~Vlv~GG~ 419 (559)
..||.+|.++-+
T Consensus 343 ~~~g~~y~~~~~ 354 (370)
T COG1520 343 GSDGTLYFGGDD 354 (370)
T ss_pred eccCeEEecccC
Confidence 457777776654
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.41 E-value=5.9 Score=38.99 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=77.2
Q ss_pred eCCcEEEEecCcEEEeeCCCCeEEEECCCCCCC--CCcccCCCceeecccccccccccccCcEEEEEcCCCCcccccccc
Q 048136 231 PDGNLYIFANNRSILLDPRANYVLREYPPLPGG--ARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEV 308 (559)
Q Consensus 231 ~~G~iyv~Gg~~~e~yDp~t~~W~~~~p~mp~~--~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 308 (559)
.+|++|+.......++|+.+++++. +...+.. ....| .-.++- .+|+||+.--.......
T Consensus 50 ~~g~l~v~~~~~~~~~d~~~g~~~~-~~~~~~~~~~~~~~--ND~~vd-----------~~G~ly~t~~~~~~~~~---- 111 (246)
T PF08450_consen 50 PDGRLYVADSGGIAVVDPDTGKVTV-LADLPDGGVPFNRP--NDVAVD-----------PDGNLYVTDSGGGGASG---- 111 (246)
T ss_dssp TTSEEEEEETTCEEEEETTTTEEEE-EEEEETTCSCTEEE--EEEEE------------TTS-EEEEEECCBCTTC----
T ss_pred cCCEEEEEEcCceEEEecCCCcEEE-EeeccCCCcccCCC--ceEEEc-----------CCCCEEEEecCCCcccc----
Confidence 5899999888888888999998873 4333211 11111 112221 37888876422111100
Q ss_pred ccccccccCceEEEEecCCCCceeee--cCCCCcccccEEEeeCCe-EEEEcCcCCCCCCccCCCCCCcccEEEeCCCCC
Q 048136 309 EKRLVPALDDCARMVVTSPDPVWTTE--KMPTPRVMSDGVLLPTGD-VLLINGAELGSAGWKDADKPCFKPLLYKPSKPP 385 (559)
Q Consensus 309 ~~~~~~a~~s~~~~d~~~~~~~W~~~--~M~~~R~~~~av~LpdG~-V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~ 385 (559)
.....+.++++. .+.+.. .|..+ .. .+.-+||+ +|+.--.. ..+..||+..+.
T Consensus 112 -----~~~g~v~~~~~~---~~~~~~~~~~~~p--NG-i~~s~dg~~lyv~ds~~-------------~~i~~~~~~~~~ 167 (246)
T PF08450_consen 112 -----IDPGSVYRIDPD---GKVTVVADGLGFP--NG-IAFSPDGKTLYVADSFN-------------GRIWRFDLDADG 167 (246)
T ss_dssp -----GGSEEEEEEETT---SEEEEEEEEESSE--EE-EEEETTSSEEEEEETTT-------------TEEEEEEEETTT
T ss_pred -----ccccceEEECCC---CeEEEEecCcccc--cc-eEECCcchheeeccccc-------------ceeEEEeccccc
Confidence 001345667654 233332 44332 22 34557887 45532111 257888886552
Q ss_pred CCeEE---ecCCCCCCccceeeeEECCCCceEEeCCCCCCCCcccCCCCCcceeeEEcCC
Q 048136 386 GSRFT---ELAPSDIPRMYHSVANLLPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPP 442 (559)
Q Consensus 386 g~~Wt---~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~~~~~~~~~~~~~~~~E~y~Pp 442 (559)
+ +++ .....+....+.--.++-.+|+|||+.-. ..+|.+|+|.
T Consensus 168 ~-~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-------------~~~I~~~~p~ 213 (246)
T PF08450_consen 168 G-ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-------------GGRIVVFDPD 213 (246)
T ss_dssp C-CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-------------TTEEEEEETT
T ss_pred c-ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-------------CCEEEEECCC
Confidence 2 222 12222221122223556789999998321 1267888876
No 74
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.16 E-value=24 Score=33.50 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=103.7
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccc-cccceEEEccCCcEEEEcCCCCCceeEE-cCCCCCCCc
Q 048136 128 LDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDG-RWYATQALLADGSFLIFGGRDSFSYEYI-PAERTENAY 205 (559)
Q Consensus 128 ~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~-R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w 205 (559)
..++++++++|+. + ..+.+||.. +.+-... +... ..-......++++.+++++.++ .+.+| ...++ .
T Consensus 17 ~~~~~~~l~~~~~-~--g~i~i~~~~-~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~~~~~~~---~ 85 (289)
T cd00200 17 FSPDGKLLATGSG-D--GTIKVWDLE-TGELLRT---LKGHTGPVRDVAASADGTYLASGSSDK-TIRLWDLETGE---C 85 (289)
T ss_pred EcCCCCEEEEeec-C--cEEEEEEee-CCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCC-eEEEEEcCccc---c
Confidence 3457788888875 2 478888876 4431110 1111 1112445566787888887653 45566 33211 1
Q ss_pred ceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccc
Q 048136 206 SIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRD 283 (559)
Q Consensus 206 ~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~ 283 (559)
. ..+.... ..-......+++++++.++ ..+.+||..+.+-...+.... .. -.++.+ .
T Consensus 86 ~--~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~---i~~~~~--~---- 144 (289)
T cd00200 86 V--RTLTGHT------SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT----DW---VNSVAF--S---- 144 (289)
T ss_pred e--EEEeccC------CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC----Cc---EEEEEE--c----
Confidence 1 1110000 0011122334677777775 457889998665443332110 00 111111 1
Q ss_pred cccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeeecCCCCcccccEEEeeCCeEEEEcCcCCCC
Q 048136 284 YYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTEKMPTPRVMSDGVLLPTGDVLLINGAELGS 363 (559)
Q Consensus 284 ~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~~M~~~R~~~~av~LpdG~V~vvGG~~~g~ 363 (559)
.+++++++|..+ ..+..||+...... ........... +....++++.+++++.+ +
T Consensus 145 ----~~~~~l~~~~~~-----------------~~i~i~d~~~~~~~-~~~~~~~~~i~-~~~~~~~~~~l~~~~~~-~- 199 (289)
T cd00200 145 ----PDGTFVASSSQD-----------------GTIKLWDLRTGKCV-ATLTGHTGEVN-SVAFSPDGEKLLSSSSD-G- 199 (289)
T ss_pred ----CcCCEEEEEcCC-----------------CcEEEEEccccccc-eeEecCccccc-eEEECCCcCEEEEecCC-C-
Confidence 135666666533 23445555421111 11111111122 24556788777777653 1
Q ss_pred CCccCCCCCCcccEEEeCCCCCCCeEEe-cCCCCCCccceeeeEECCCCceEEeCC
Q 048136 364 AGWKDADKPCFKPLLYKPSKPPGSRFTE-LAPSDIPRMYHSVANLLPDGRVFVGGS 418 (559)
Q Consensus 364 ~g~~~~~~~~~~~e~YDP~t~~g~~Wt~-~~~~~~~R~yhs~a~llpdG~Vlv~GG 418 (559)
.+.+||..+. +... .... ... -......+|++++++++
T Consensus 200 -----------~i~i~d~~~~---~~~~~~~~~--~~~-i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 200 -----------TIKLWDLSTG---KCLGTLRGH--ENG-VNSVAFSPDGYLLASGS 238 (289)
T ss_pred -----------cEEEEECCCC---ceecchhhc--CCc-eEEEEEcCCCcEEEEEc
Confidence 5789998764 3221 1111 111 12345678888888887
No 75
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=87.68 E-value=0.66 Score=49.76 Aligned_cols=126 Identities=16% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCCcEEecCC----------CCCcceeEEEee-cCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceee
Q 048136 34 FLGKWELLPN----------NPGISAMHSVLL-PNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHS 102 (559)
Q Consensus 34 ~~g~W~~~~~----------~~~~~~~h~~~~-~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 102 (559)
-.-.|..+.. .++.|.-|..|. +.+.-||+.||.+ |... .+-.
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~-------------------------l~DF 290 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQD-------------------------LADF 290 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchh-------------------------HHHH
Confidence 3557776642 234566676665 2234899999986 2111 1112
Q ss_pred EEEeCCCCCEEeCccCC----CcccccCeecC-CCcEEEEcCCCC--------CCCeEEEEeCCCCCCeecCCCccccc-
Q 048136 103 VFYNVNTLQVTPLKVIT----DTWCSSGGLDV-NGNLISTGGFLG--------GSRTTRYLWGCPTCDWTEYPTALKDG- 168 (559)
Q Consensus 103 ~~yDp~t~~w~~~~~~~----~~~c~~~~~l~-dG~i~v~GG~~~--------g~~~v~~ydp~~t~~W~~~~~~m~~~- 168 (559)
-.|....+.|+.+...+ .+-|+-.+... .-++|+.|-+.+ +..+.+.||-. ++.|.-+. |.+.
T Consensus 291 W~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~-~~~W~~ls--~dt~~ 367 (723)
T KOG2437|consen 291 WAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID-TNTWMLLS--EDTAA 367 (723)
T ss_pred HhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecC-CceeEEec--ccccc
Confidence 35888888899876432 34565433222 248999997642 23578999999 99999873 4332
Q ss_pred ------cccceEEEccCCc--EEEEcCCC
Q 048136 169 ------RWYATQALLADGS--FLIFGGRD 189 (559)
Q Consensus 169 ------R~y~s~~~L~dG~--VyvvGG~~ 189 (559)
-..|.+++. ..| |||.||+.
T Consensus 368 dGGP~~vfDHqM~Vd-~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 368 DGGPKLVFDHQMCVD-SEKHMIYVFGGRI 395 (723)
T ss_pred cCCcceeecceeeEe-cCcceEEEecCee
Confidence 345667766 345 99999974
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=86.74 E-value=14 Score=36.57 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=72.0
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccc---cccccceEEEccCCcEEEEcCCCCCceeEE-cCCCC
Q 048136 126 GGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALK---DGRWYATQALLADGSFLIFGGRDSFSYEYI-PAERT 201 (559)
Q Consensus 126 ~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~---~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~ 201 (559)
.++..|-+-+++||.. +-+++||-. .-+ +++|. .+|.--.+.-+...+-++.. .+..++.+| -++++
T Consensus 106 ~af~~ds~~lltgg~e---kllrvfdln-~p~----App~E~~ghtg~Ir~v~wc~eD~~iLSS-add~tVRLWD~rTgt 176 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQE---KLLRVFDLN-RPK----APPKEISGHTGGIRTVLWCHEDKCILSS-ADDKTVRLWDHRTGT 176 (334)
T ss_pred EEecccchhhhccchH---HHhhhhhcc-CCC----CCchhhcCCCCcceeEEEeccCceEEee-ccCCceEEEEeccCc
Confidence 3455677888899873 567888865 221 22132 22332233334344444443 555678788 44432
Q ss_pred CCCcceeccccccccccccCCccceEEEeeCCcEEEEe-cCcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeeccccc
Q 048136 202 ENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFA-NNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKL 280 (559)
Q Consensus 202 ~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~G-g~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~ 280 (559)
.+..+..+ ..--.+-+..+|+|..+. |.++..+|+++-.-.+. -.||- +. .++.+-|
T Consensus 177 -----~v~sL~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs-~k~P~---nV---~SASL~P--- 234 (334)
T KOG0278|consen 177 -----EVQSLEFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKS-YKMPC---NV---ESASLHP--- 234 (334)
T ss_pred -----EEEEEecC-------CCCcceeeccCCCEEEEecCceeEEeccccccceee-ccCcc---cc---ccccccC---
Confidence 11111000 001123456799999887 57788889987554422 23441 11 2333443
Q ss_pred ccccccccCcEEEEEcCCC
Q 048136 281 YRDYYARVDAEVLICGGSV 299 (559)
Q Consensus 281 ~~~~~~~~~gkI~v~GG~~ 299 (559)
+-.+|||||.+
T Consensus 235 --------~k~~fVaGged 245 (334)
T KOG0278|consen 235 --------KKEFFVAGGED 245 (334)
T ss_pred --------CCceEEecCcc
Confidence 55899999976
No 77
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=86.30 E-value=13 Score=36.44 Aligned_cols=139 Identities=20% Similarity=0.125 Sum_probs=73.0
Q ss_pred EEEeCCCCCEEeCccC-----CCcccccCeecCCCcEEEEcCCCC---CC--CeEEEEeCCCCCCeecCCCccccccccc
Q 048136 103 VFYNVNTLQVTPLKVI-----TDTWCSSGGLDVNGNLISTGGFLG---GS--RTTRYLWGCPTCDWTEYPTALKDGRWYA 172 (559)
Q Consensus 103 ~~yDp~t~~w~~~~~~-----~~~~c~~~~~l~dG~i~v~GG~~~---g~--~~v~~ydp~~t~~W~~~~~~m~~~R~y~ 172 (559)
..+|+.+++++.+... ...++...++..+|+||+.--... .. ..+.++++. .+...+...|..+ .
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~p---N 137 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFP---N 137 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSE---E
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccc---c
Confidence 4569999999887654 345677788899999999642111 11 358888886 4444433223332 3
Q ss_pred eEEEccCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccce-EEEeeCCcEEEE--ecCcEEEeeC
Q 048136 173 TQALLADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPF-VYLVPDGNLYIF--ANNRSILLDP 248 (559)
Q Consensus 173 s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~-~~~l~~G~iyv~--Gg~~~e~yDp 248 (559)
+.+.-+||+.+.+.-.....+..| ..... ........+..-. ....+|- +++-.+|+||+. ++..+.+|||
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~-~~~~~~~~~~~~~----~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADG-GELSNRRVFIDFP----GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTT-CCEEEEEEEEE-S----SSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred ceEECCcchheeecccccceeEEEeccccc-cceeeeeeEEEcC----CCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 566667887444432222334445 32211 0011111110000 0011233 344458999997 6788999999
Q ss_pred CCC
Q 048136 249 RAN 251 (559)
Q Consensus 249 ~t~ 251 (559)
...
T Consensus 213 ~G~ 215 (246)
T PF08450_consen 213 DGK 215 (246)
T ss_dssp TSC
T ss_pred Ccc
Confidence 944
No 78
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=85.27 E-value=16 Score=38.33 Aligned_cols=120 Identities=10% Similarity=0.045 Sum_probs=70.3
Q ss_pred cCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcEEEEcCCCCC---------ceeEE---
Q 048136 129 DVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGGRDSF---------SYEYI--- 196 (559)
Q Consensus 129 l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~~---------s~E~y--- 196 (559)
+.+.+|+.++.. ..+-+||+. +..-..+|. |..+..++-+..+ ++++||+...... ..|.+
T Consensus 74 l~gskIv~~d~~----~~t~vyDt~-t~av~~~P~-l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 74 LHGSKIVAVDQS----GRTLVYDTD-TRAVATGPR-LHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred ecCCeEEEEcCC----CCeEEEECC-CCeEeccCC-CCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEEeccc
Confidence 357788888654 347799999 888888876 8888888866667 6789999876321 56665
Q ss_pred cCC---CCCCCcce-eccccccccccccCCccceEEEee-CCcEEEEe-cC--cEEEeeCCCCeEEE
Q 048136 197 PAE---RTENAYSI-PFQFLRDTYDVLENNLYPFVYLVP-DGNLYIFA-NN--RSILLDPRANYVLR 255 (559)
Q Consensus 197 P~~---~~~~~w~~-~~p~l~~~~d~~~~~~yp~~~~l~-~G~iyv~G-g~--~~e~yDp~t~~W~~ 255 (559)
+.. .....|.. ..|.+.-..+.......-..+++. +..|||.- +. ..-.||..+.+|.+
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRK 213 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceee
Confidence 111 11012321 222211111100000002234444 55688854 34 58899999999985
No 79
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.08 E-value=31 Score=35.53 Aligned_cols=160 Identities=13% Similarity=0.201 Sum_probs=76.7
Q ss_pred CCcEEecCCCCCcceeEE-EeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCCCEE
Q 048136 35 LGKWELLPNNPGISAMHS-VLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTLQVT 113 (559)
Q Consensus 35 ~g~W~~~~~~~~~~~~h~-~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~ 113 (559)
-.+|+.+... ....+-. ..+ .+|++++++.. |+ ....+|+-...|+
T Consensus 133 G~tW~~~~~~-~~gs~~~~~r~-~dG~~vavs~~-------------G~------------------~~~s~~~G~~~w~ 179 (302)
T PF14870_consen 133 GKTWQAVVSE-TSGSINDITRS-SDGRYVAVSSR-------------GN------------------FYSSWDPGQTTWQ 179 (302)
T ss_dssp TSSEEEEE-S-----EEEEEE--TTS-EEEEETT-------------SS------------------EEEEE-TT-SS-E
T ss_pred CCCeeEcccC-CcceeEeEEEC-CCCcEEEEECc-------------cc------------------EEEEecCCCccce
Confidence 3489987553 2333433 344 78898888743 31 1345788888899
Q ss_pred eCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEe-CCCCCCeecCCCccccccc-cceEEEccCCcEEEEcCCCCC
Q 048136 114 PLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLW-GCPTCDWTEYPTALKDGRW-YATQALLADGSFLIFGGRDSF 191 (559)
Q Consensus 114 ~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~yd-p~~t~~W~~~~~~m~~~R~-y~s~~~L~dG~VyvvGG~~~~ 191 (559)
+.......+-....+.+|+.|+++. . .| .+++=| +.+..+|.+...+.....+ +..++.-.++.++++||...
T Consensus 180 ~~~r~~~~riq~~gf~~~~~lw~~~-~-Gg--~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~- 254 (302)
T PF14870_consen 180 PHNRNSSRRIQSMGFSPDGNLWMLA-R-GG--QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT- 254 (302)
T ss_dssp EEE--SSS-EEEEEE-TTS-EEEEE-T-TT--EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--
T ss_pred EEccCccceehhceecCCCCEEEEe-C-Cc--EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-
Confidence 8876666666666777899887764 1 11 233333 3325678873211333334 46677777899999999753
Q ss_pred ceeEE--cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecCcE
Q 048136 192 SYEYI--PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRS 243 (559)
Q Consensus 192 s~E~y--P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~ 243 (559)
+| ...++ .|.+. +.... .+.|+|-..+. .+.+-|++|.+.+
T Consensus 255 ---l~~S~DgGk--tW~~~-~~~~~----~~~n~~~i~f~-~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 255 ---LLVSTDGGK--TWQKD-RVGEN----VPSNLYRIVFV-NPDKGFVLGQDGV 297 (302)
T ss_dssp ---EEEESSTTS--S-EE--GGGTT----SSS---EEEEE-ETTEEEEE-STTE
T ss_pred ---EEEeCCCCc--cceEC-ccccC----CCCceEEEEEc-CCCceEEECCCcE
Confidence 33 22232 46432 21111 23456755544 4679999987754
No 80
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=85.07 E-value=34 Score=32.86 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=73.8
Q ss_pred EeeCCcEEEE-ecCcEEEeeCCCCe--EEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccc
Q 048136 229 LVPDGNLYIF-ANNRSILLDPRANY--VLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYF 305 (559)
Q Consensus 229 ~l~~G~iyv~-Gg~~~e~yDp~t~~--W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~ 305 (559)
+..+|+||+. +.....+||..+++ |...+ ++ ... ..-+ . .+++||+....
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~-~~~----~~~~-~-----------~~~~v~v~~~~------- 85 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PG-PIS----GAPV-V-----------DGGRVYVGTSD------- 85 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEEC---SS-CGG----SGEE-E-----------ETTEEEEEETT-------
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeec---cc-ccc----ceee-e-----------cccccccccce-------
Confidence 3468888887 44678899998875 55433 21 111 1111 1 37788877632
Q ss_pred cccccccccccCceEEEEecCCCCceee-e-cCCCCccccc-EEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCC
Q 048136 306 GEVEKRLVPALDDCARMVVTSPDPVWTT-E-KMPTPRVMSD-GVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPS 382 (559)
Q Consensus 306 ~~~~~~~~~a~~s~~~~d~~~~~~~W~~-~-~M~~~R~~~~-av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~ 382 (559)
+.+.++|..+..-.|+. . .-+..+.... ...+-++++++ +... ..+.++|++
T Consensus 86 -----------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------g~l~~~d~~ 140 (238)
T PF13360_consen 86 -----------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV-GTSS-------------GKLVALDPK 140 (238)
T ss_dssp -----------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE-EETC-------------SEEEEEETT
T ss_pred -----------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEE-Eecc-------------CcEEEEecC
Confidence 23556776665678994 4 3233332222 23333455555 3322 157899998
Q ss_pred CCCCCeEEecCCCCCC-----ccc-eeeeEECCCCceEEeCCCC
Q 048136 383 KPPGSRFTELAPSDIP-----RMY-HSVANLLPDGRVFVGGSND 420 (559)
Q Consensus 383 t~~g~~Wt~~~~~~~~-----R~y-hs~a~llpdG~Vlv~GG~~ 420 (559)
+..- .|+.-...+.. +.. .....++.+|+||+..+..
T Consensus 141 tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 141 TGKL-LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp TTEE-EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred CCcE-EEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 7621 57753333211 011 1234556678999988754
No 81
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=84.72 E-value=49 Score=33.66 Aligned_cols=192 Identities=17% Similarity=0.199 Sum_probs=99.5
Q ss_pred cccceEEEccCCcEEEEcCCCCCceeEEcCCCCCCCc-ceeccccccccccccCCccceEEE-eeCCcEEEEec-CcEEE
Q 048136 169 RWYATQALLADGSFLIFGGRDSFSYEYIPAERTENAY-SIPFQFLRDTYDVLENNLYPFVYL-VPDGNLYIFAN-NRSIL 245 (559)
Q Consensus 169 R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w-~~~~p~l~~~~d~~~~~~yp~~~~-l~~G~iyv~Gg-~~~e~ 245 (559)
-|--+.+.-|.|...+.||.++. ..+||.+..-+.. ..+...+... ..|-..+- +.|++|....| .+..+
T Consensus 98 ~WVMtCA~sPSg~~VAcGGLdN~-Csiy~ls~~d~~g~~~v~r~l~gH------tgylScC~f~dD~~ilT~SGD~TCal 170 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFVACGGLDNK-CSIYPLSTRDAEGNVRVSRELAGH------TGYLSCCRFLDDNHILTGSGDMTCAL 170 (343)
T ss_pred eeEEEEEECCCCCeEEecCcCce-eEEEecccccccccceeeeeecCc------cceeEEEEEcCCCceEecCCCceEEE
Confidence 35566777889999999999863 4577433110011 1122222221 12333332 23777776544 56789
Q ss_pred eeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEec
Q 048136 246 LDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVT 325 (559)
Q Consensus 246 yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~ 325 (559)
||.++++-++.+ . .+.|-...|.+.| .+++.||.||.+.. +..+|..
T Consensus 171 WDie~g~~~~~f---~------GH~gDV~slsl~p-------~~~ntFvSg~cD~~-----------------aklWD~R 217 (343)
T KOG0286|consen 171 WDIETGQQTQVF---H------GHTGDVMSLSLSP-------SDGNTFVSGGCDKS-----------------AKLWDVR 217 (343)
T ss_pred EEcccceEEEEe---c------CCcccEEEEecCC-------CCCCeEEecccccc-----------------eeeeecc
Confidence 999998755433 1 2223333344433 27899999998732 2344444
Q ss_pred CCCCceeee-cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCe-EEecCCCCCCcccee
Q 048136 326 SPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSR-FTELAPSDIPRMYHS 403 (559)
Q Consensus 326 ~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~-Wt~~~~~~~~R~yhs 403 (559)
.+ .=... .-+..-... ..-.|+|.-|+.|-.+ + ++.+||-.++ + -....+-.+--.--
T Consensus 218 ~~--~c~qtF~ghesDINs-v~ffP~G~afatGSDD-~------------tcRlyDlRaD---~~~a~ys~~~~~~git- 277 (343)
T KOG0286|consen 218 SG--QCVQTFEGHESDINS-VRFFPSGDAFATGSDD-A------------TCRLYDLRAD---QELAVYSHDSIICGIT- 277 (343)
T ss_pred Cc--ceeEeecccccccce-EEEccCCCeeeecCCC-c------------eeEEEeecCC---cEEeeeccCcccCCce-
Confidence 31 11110 111111111 2345788888876433 1 6788888887 3 11111111111112
Q ss_pred eeEECCCCceEEeCCCC
Q 048136 404 VANLLPDGRVFVGGSND 420 (559)
Q Consensus 404 ~a~llpdG~Vlv~GG~~ 420 (559)
...+-..||+|.+|..+
T Consensus 278 Sv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDD 294 (343)
T ss_pred eEEEcccccEEEeeecC
Confidence 23455689999999653
No 82
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=84.15 E-value=41 Score=32.29 Aligned_cols=144 Identities=9% Similarity=0.020 Sum_probs=65.8
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCC-CCCee-cCCCcccc-ccccceEEEcc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCP-TCDWT-EYPTALKD-GRWYATQALLA 178 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~-t~~W~-~~~~~m~~-~R~y~s~~~L~ 178 (559)
..+||+.+++..--.......+.. ....+++||+.... +.++.+|..+ .-.|+ .... -+. .-.......+.
T Consensus 48 l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~~----~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~ 121 (238)
T PF13360_consen 48 LYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTSD----GSLYALDAKTGKVLWSIYLTS-SPPAGVRSSSSPAVD 121 (238)
T ss_dssp EEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEETT----SEEEEEETTTSCEEEEEEE-S-SCTCSTB--SEEEEE
T ss_pred EEEEECCCCCEEEEeeccccccce-eeecccccccccce----eeeEecccCCcceeeeecccc-ccccccccccCceEe
Confidence 578998888633222222332222 35668888877632 3789999762 23587 3322 111 12223333342
Q ss_pred CCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecCc-EEEeeCCCCe--EE
Q 048136 179 DGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNR-SILLDPRANY--VL 254 (559)
Q Consensus 179 dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~-~e~yDp~t~~--W~ 254 (559)
++++|+.. .++ .+-.+ +++++ ..|.......................+..+|+||+..+.. +..+|.++++ |.
T Consensus 122 ~~~~~~~~-~~g-~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 122 GDRLYVGT-SSG-KLVALDPKTGK-LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWS 198 (238)
T ss_dssp TTEEEEEE-TCS-EEEEEETTTTE-EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEE
T ss_pred cCEEEEEe-ccC-cEEEEecCCCc-EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 45555543 221 22333 45442 1233222111100000000000122344478999988655 3445999987 74
No 83
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.83 E-value=71 Score=34.82 Aligned_cols=203 Identities=15% Similarity=0.106 Sum_probs=106.7
Q ss_pred CCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCcEEEEcCCCCCceeEE-c
Q 048136 119 TDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGSFLIFGGRDSFSYEYI-P 197 (559)
Q Consensus 119 ~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P 197 (559)
+...+....+-+||+.++.|.. | .++++||......-... -+.+.-+-.+++.-++|+.++.|+.+ .++.+| .
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s~-D--~tiriwd~~~~~~~~~~--l~gH~~~v~~~~f~p~g~~i~Sgs~D-~tvriWd~ 275 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGSD-D--KTLRIWDLKDDGRNLKT--LKGHSTYVTSVAFSPDGNLLVSGSDD-GTVRIWDV 275 (456)
T ss_pred cccceeeeEECCCCcEEEEecC-C--ceEEEeeccCCCeEEEE--ecCCCCceEEEEecCCCCEEEEecCC-CcEEEEec
Confidence 5556666778889998777765 3 68999998412122111 01223333566667788787777766 466777 4
Q ss_pred CCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEeeCCCCeE--EEECCCCCCCCCcccCCCce
Q 048136 198 AERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLDPRANYV--LREYPPLPGGARNYPSTSTS 273 (559)
Q Consensus 198 ~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t~~W--~~~~p~mp~~~~~~p~~g~~ 273 (559)
++.+ ....+....+ .--.+..-.+|++++.+. ..+.+||..++.- .+.+.. ...+..-..
T Consensus 276 ~~~~------~~~~l~~hs~-----~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~ 339 (456)
T KOG0266|consen 276 RTGE------CVRKLKGHSD-----GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-----AENSAPVTS 339 (456)
T ss_pred cCCe------EEEeeeccCC-----ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-----CCCCCceeE
Confidence 4321 1122222111 001122335888888875 3478899998862 222211 111100112
Q ss_pred eecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCC--CCceeeecCCCCcccccEEEeeCC
Q 048136 274 VLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSP--DPVWTTEKMPTPRVMSDGVLLPTG 351 (559)
Q Consensus 274 v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~--~~~W~~~~M~~~R~~~~av~LpdG 351 (559)
+.. ..+++.++++..+. .+-.+|+... ...|...... .|.....+..++|
T Consensus 340 ~~f----------sp~~~~ll~~~~d~-----------------~~~~w~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 340 VQF----------SPNGKYLLSASLDR-----------------TLKLWDLRSGKSVGTYTGHSNL-VRCIFSPTLSTGG 391 (456)
T ss_pred EEE----------CCCCcEEEEecCCC-----------------eEEEEEccCCcceeeecccCCc-ceeEecccccCCC
Confidence 211 12677777765441 2223343321 0122222111 2455445556788
Q ss_pred eEEEEcCcCCCCCCccCCCCCCcccEEEeCCCC
Q 048136 352 DVLLINGAELGSAGWKDADKPCFKPLLYKPSKP 384 (559)
Q Consensus 352 ~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~ 384 (559)
+..+.|..+. .+++||+.+.
T Consensus 392 ~~i~sg~~d~-------------~v~~~~~~s~ 411 (456)
T KOG0266|consen 392 KLIYSGSEDG-------------SVYVWDSSSG 411 (456)
T ss_pred CeEEEEeCCc-------------eEEEEeCCcc
Confidence 8888877651 6899999875
No 84
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=82.61 E-value=49 Score=32.84 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeec--CCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCC-----ccc---ccccc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLD--VNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPT-----ALK---DGRWY 171 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l--~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~-----~m~---~~R~y 171 (559)
..++|.++++.+..-.-|.-+-+ .++. .++.| ..|+. || +++++|.+ +.+-...-. .+. ..||-
T Consensus 138 ~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qi-lsG~E-DG--tvRvWd~k-t~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 138 IYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQI-LSGAE-DG--TVRVWDTK-TQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred EEEEEecCCEEEEEEcCCcceee-eeeecccCcce-eecCC-Cc--cEEEEecc-ccceeEEeccccChhhcCcccCcee
Confidence 46789999888754333322211 1122 24444 34554 44 78888887 665443211 122 34554
Q ss_pred ceEEEccCCcEEEEcCCCCCceeEE--cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEe-cCcEEEeeC
Q 048136 172 ATQALLADGSFLIFGGRDSFSYEYI--PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFA-NNRSILLDP 248 (559)
Q Consensus 172 ~s~~~L~dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~G-g~~~e~yDp 248 (559)
-+. .. |-.-+|.||-.. ..+| +... -..+.|+.... +.+...+..|.+.| |+++..|..
T Consensus 212 gal-a~-~edWlvCGgGp~--lslwhLrsse----~t~vfpipa~v----------~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 212 GAL-AV-NEDWLVCGGGPK--LSLWHLRSSE----STCVFPIPARV----------HLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EEE-ec-cCceEEecCCCc--eeEEeccCCC----ceEEEecccce----------eEeeeecceEEEeccccceeeeee
Confidence 333 33 678888888543 3344 3322 22345543221 11223366666666 677776654
No 85
>PTZ00421 coronin; Provisional
Probab=81.60 E-value=61 Score=35.83 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=33.0
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCC
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCD 157 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~ 157 (559)
..+||..+++-...-..+.........-+||.++++|+.. +.+++||+. +.+
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D---g~IrIwD~r-sg~ 201 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD---KKLNIIDPR-DGT 201 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC---CEEEEEECC-CCc
Confidence 6889988765432211122222233455799999999863 589999998 554
No 86
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=78.62 E-value=78 Score=33.13 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=74.7
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCC-CCCeecCC--CccccccccceEEEcc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCP-TCDWTEYP--TALKDGRWYATQALLA 178 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~-t~~W~~~~--~~m~~~R~y~s~~~L~ 178 (559)
+.+||..++.|--.-.-|.---....+-.||.++++|+.. | .+.+|+-.. ..+|.-.. ..|..-+|-+
T Consensus 88 AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms-G--~v~v~~~stg~~~~~~~~e~~dieWl~WHp------ 158 (399)
T KOG0296|consen 88 AFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS-G--KVLVFKVSTGGEQWKLDQEVEDIEWLKWHP------ 158 (399)
T ss_pred EEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC-c--cEEEEEcccCceEEEeecccCceEEEEecc------
Confidence 6789999988643222221111112345699999999983 3 567777652 34575431 2365667754
Q ss_pred CCcEEEEcCCCCCceeEE--cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEeeCCCCeEE
Q 048136 179 DGSFLIFGGRDSFSYEYI--PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLDPRANYVL 254 (559)
Q Consensus 179 dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t~~W~ 254 (559)
-+.|+..|-.+ .++.+| |... -..+++-... + -...-.+++||..+.|- .++.+|||++.+-.
T Consensus 159 ~a~illAG~~D-GsvWmw~ip~~~----~~kv~~Gh~~-------~-ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 159 RAHILLAGSTD-GSVWMWQIPSQA----LCKVMSGHNS-------P-CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred cccEEEeecCC-CcEEEEECCCcc----eeeEecCCCC-------C-cccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 35677766544 356677 5432 2222221110 0 11123568898887774 46789999998654
No 87
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=78.14 E-value=88 Score=32.24 Aligned_cols=241 Identities=10% Similarity=0.077 Sum_probs=95.5
Q ss_pred CCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCC-CCCeecCCCccccc-cccceEEEccCCcEEEEc
Q 048136 109 TLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCP-TCDWTEYPTALKDG-RWYATQALLADGSFLIFG 186 (559)
Q Consensus 109 t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~-t~~W~~~~~~m~~~-R~y~s~~~L~dG~VyvvG 186 (559)
.+.|+.+....+.......++-+.+-+++|-.. . +|-..+ ..+|......+..+ ......+...+.+.||+|
T Consensus 5 ~~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~g----~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG 78 (302)
T PF14870_consen 5 GNSWQQVSLPTDKPLLDVAFVDPNHGWAVGAYG----T--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG 78 (302)
T ss_dssp S--EEEEE-S-SS-EEEEEESSSS-EEEEETTT----E--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE
T ss_pred CCCcEEeecCCCCceEEEEEecCCEEEEEecCC----E--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc
Confidence 457887775554444344455456778887541 2 222211 46798864323332 222333334478899987
Q ss_pred CCCCCceeEE--cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecCcEEEeeC--CCCeEEEECCCCCC
Q 048136 187 GRDSFSYEYI--PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRSILLDP--RANYVLREYPPLPG 262 (559)
Q Consensus 187 G~~~~s~E~y--P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~yDp--~t~~W~~~~p~mp~ 262 (559)
-.. . ++ ...+ ..|..+. +..+. +- .......+.++.+.+++.... +|-. ...+|........
T Consensus 79 ~~g---~-ll~T~DgG--~tW~~v~-l~~~l----pg-s~~~i~~l~~~~~~l~~~~G~-iy~T~DgG~tW~~~~~~~~- 144 (302)
T PF14870_consen 79 EPG---L-LLHTTDGG--KTWERVP-LSSKL----PG-SPFGITALGDGSAELAGDRGA-IYRTTDGGKTWQAVVSETS- 144 (302)
T ss_dssp ETT---E-EEEESSTT--SS-EE-----TT-----SS--EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE-S---
T ss_pred CCc---e-EEEecCCC--CCcEEee-cCCCC----CC-CeeEEEEcCCCcEEEEcCCCc-EEEeCCCCCCeeEcccCCc-
Confidence 431 1 23 2222 2465532 11110 00 111223344666777665432 3332 2357884321110
Q ss_pred CCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeeecCCCCccc
Q 048136 263 GARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTEKMPTPRVM 342 (559)
Q Consensus 263 ~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~~M~~~R~~ 342 (559)
++. ..+.. ..+|++++++-.. .-|. ..|+.. ..|+.-..+..|..
T Consensus 145 --------gs~--~~~~r------~~dG~~vavs~~G-~~~~----------------s~~~G~--~~w~~~~r~~~~ri 189 (302)
T PF14870_consen 145 --------GSI--NDITR------SSDGRYVAVSSRG-NFYS----------------SWDPGQ--TTWQPHNRNSSRRI 189 (302)
T ss_dssp ----------E--EEEEE-------TTS-EEEEETTS-SEEE----------------EE-TT---SS-EEEE--SSS-E
T ss_pred --------cee--EeEEE------CCCCcEEEEECcc-cEEE----------------EecCCC--ccceEEccCcccee
Confidence 111 11000 1378888887432 1111 123221 46888866655655
Q ss_pred ccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCC-Cccc-eeeeEECCCCceEEeCCCC
Q 048136 343 SDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDI-PRMY-HSVANLLPDGRVFVGGSND 420 (559)
Q Consensus 343 ~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~-~R~y-hs~a~llpdG~Vlv~GG~~ 420 (559)
-++..-+|+.++++. . |. .+.+=| ..+.+.+|++-. .++ .+.| +-...-.+++.|+++||..
T Consensus 190 q~~gf~~~~~lw~~~-~--Gg-----------~~~~s~-~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA-R--GG-----------QIQFSD-DPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEEE-TTS-EEEEE-T--TT-----------EEEEEE--TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred hhceecCCCCEEEEe-C--Cc-----------EEEEcc-CCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 557778999998865 2 21 111111 222223787621 222 2222 2234556889999999964
No 88
>PTZ00420 coronin; Provisional
Probab=75.10 E-value=77 Score=35.69 Aligned_cols=134 Identities=12% Similarity=0.123 Sum_probs=66.3
Q ss_pred eEEEeCCCCCEE-eCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccc-cceEEE---
Q 048136 102 SVFYNVNTLQVT-PLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRW-YATQAL--- 176 (559)
Q Consensus 102 ~~~yDp~t~~w~-~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~-y~s~~~--- 176 (559)
..+||..+.+-. .+. +.....+...-+||.++++++. + +.+++||+. +.+ .+.. +..... ..+.++
T Consensus 150 IrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~-D--~~IrIwD~R-sg~--~i~t-l~gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 150 VNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCV-G--KHMHIIDPR-KQE--IASS-FHIHDGGKNTKNIWID 220 (568)
T ss_pred EEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEec-C--CEEEEEECC-CCc--EEEE-EecccCCceeEEEEee
Confidence 678998876522 111 1112223345679999998875 2 579999998 543 1111 211110 011111
Q ss_pred --ccCCcEEEEcCCCC---CceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEe--cCcEEEeeC
Q 048136 177 --LADGSFLIFGGRDS---FSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFA--NNRSILLDP 248 (559)
Q Consensus 177 --L~dG~VyvvGG~~~---~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~G--g~~~e~yDp 248 (559)
-+|+..++.+|.+. ..+.+| .+... - |+.....|.....+.|+. --.+|.+|+.| +..+.+|+.
T Consensus 221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~----pl~~~~ld~~~~~L~p~~-D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 221 GLGGDDNYILSTGFSKNNMREMKLWDLKNTT---S----ALVTMSIDNASAPLIPHY-DESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred eEcCCCCEEEEEEcCCCCccEEEEEECCCCC---C----ceEEEEecCCccceEEee-eCCCCCEEEEEECCCeEEEEEc
Confidence 14677777777654 356777 33210 0 110000010000111211 12358999887 356788888
Q ss_pred CCCe
Q 048136 249 RANY 252 (559)
Q Consensus 249 ~t~~ 252 (559)
..+.
T Consensus 293 ~~~~ 296 (568)
T PTZ00420 293 SLGS 296 (568)
T ss_pred cCCc
Confidence 7664
No 89
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=73.88 E-value=1.4e+02 Score=32.50 Aligned_cols=233 Identities=15% Similarity=0.143 Sum_probs=123.8
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEeCCCCCCe-ecCCCcc-ccccccceEEEccCCcEEEEcCCCCCceeEE-cCCCCCC
Q 048136 127 GLDVNGNLISTGGFLGGSRTTRYLWGCPTCDW-TEYPTAL-KDGRWYATQALLADGSFLIFGGRDSFSYEYI-PAERTEN 203 (559)
Q Consensus 127 ~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W-~~~~~~m-~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~ 203 (559)
.+-.||+.++.+.. .+.+.+++.. ..+ ...-. + .+.++-...+.-+||+ |++.|.+..++.+| ...+
T Consensus 166 ~fs~~g~~l~~~~~---~~~i~~~~~~--~~~~~~~~~-l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~--- 235 (456)
T KOG0266|consen 166 DFSPDGRALAAASS---DGLIRIWKLE--GIKSNLLRE-LSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDD--- 235 (456)
T ss_pred EEcCCCCeEEEccC---CCcEEEeecc--cccchhhcc-ccccccceeeeEECCCCc-EEEEecCCceEEEeeccCC---
Confidence 34678999777654 2567777764 223 12212 3 2445555566677898 55555555677788 3222
Q ss_pred CcceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccc
Q 048136 204 AYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLY 281 (559)
Q Consensus 204 ~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~ 281 (559)
... ..-+....+ .-..+...++|++++.|+ ..+.+||.++.+-.+.+. +. .-+ -+++..+
T Consensus 236 -~~~-~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---~h--s~~--is~~~f~---- 297 (456)
T KOG0266|consen 236 -GRN-LKTLKGHST-----YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK---GH--SDG--ISGLAFS---- 297 (456)
T ss_pred -CeE-EEEecCCCC-----ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---cc--CCc--eEEEEEC----
Confidence 111 111111110 111223346889999886 468899999876554332 11 001 1222222
Q ss_pred cccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCcee-----ee-cCCCCcccccEEE-eeCCeEE
Q 048136 282 RDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWT-----TE-KMPTPRVMSDGVL-LPTGDVL 354 (559)
Q Consensus 282 ~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~-----~~-~M~~~R~~~~av~-LpdG~V~ 354 (559)
.++.+++.+..+ ..+..||+.. |. .. ....+. ....+. -|||+.+
T Consensus 298 ------~d~~~l~s~s~d-----------------~~i~vwd~~~----~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 298 ------PDGNLLVSASYD-----------------GTIRVWDLET----GSKLCLKLLSGAENSA-PVTSVQFSPNGKYL 349 (456)
T ss_pred ------CCCCEEEEcCCC-----------------ccEEEEECCC----CceeeeecccCCCCCC-ceeEEEECCCCcEE
Confidence 378888888543 2345566542 33 11 222221 112223 3899988
Q ss_pred EEcCcCCCCCCccCCCCCCcccEEEeCCCCC-CCeEEecCCCCCCccceeeeEECCCCceEEeCCCCCCCCcccCCCCCc
Q 048136 355 LINGAELGSAGWKDADKPCFKPLLYKPSKPP-GSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDNDGYQEWAKFPTE 433 (559)
Q Consensus 355 vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~-g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~~~~~~~~~~~~~ 433 (559)
+++..+. .+-+||..... -.+|+..... .|... ..+..++|+.++.|+.+.
T Consensus 350 l~~~~d~-------------~~~~w~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~i~sg~~d~------------ 401 (456)
T KOG0266|consen 350 LSASLDR-------------TLKLWDLRSGKSVGTYTGHSNL--VRCIF-SPTLSTGGKLIYSGSEDG------------ 401 (456)
T ss_pred EEecCCC-------------eEEEEEccCCcceeeecccCCc--ceeEe-cccccCCCCeEEEEeCCc------------
Confidence 8876542 45677776541 1234433222 13333 244578999999998643
Q ss_pred ceeeEEcCCCC
Q 048136 434 LRLEKFSPPYL 444 (559)
Q Consensus 434 ~~~E~y~Ppyl 444 (559)
.+++|++...
T Consensus 402 -~v~~~~~~s~ 411 (456)
T KOG0266|consen 402 -SVYVWDSSSG 411 (456)
T ss_pred -eEEEEeCCcc
Confidence 5788888764
No 90
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=73.18 E-value=1.2e+02 Score=31.78 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=75.8
Q ss_pred eCCcEEEEec-CcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccc
Q 048136 231 PDGNLYIFAN-NRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVE 309 (559)
Q Consensus 231 ~~G~iyv~Gg-~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~ 309 (559)
.+.||+++.. ..+.+||+++.... .+|.|+. +..+| +.++ ..++||+...........
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~-~~P~l~~-pk~~p-----isv~----------VG~~LY~m~~~~~~~~~~---- 133 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVA-TGPRLHS-PKRCP-----ISVS----------VGDKLYAMDRSPFPEPAG---- 133 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEe-ccCCCCC-CCcce-----EEEE----------eCCeEEEeeccCcccccc----
Confidence 4788888854 34789999999876 5776653 22232 3333 377899998764211000
Q ss_pred cccccccCceEEE--Eec----CCCCcee--ee-cCCCCccc------ccEEEee-CCeEEE-EcCcCCCCCCccCCCCC
Q 048136 310 KRLVPALDDCARM--VVT----SPDPVWT--TE-KMPTPRVM------SDGVLLP-TGDVLL-INGAELGSAGWKDADKP 372 (559)
Q Consensus 310 ~~~~~a~~s~~~~--d~~----~~~~~W~--~~-~M~~~R~~------~~av~Lp-dG~V~v-vGG~~~g~~g~~~~~~~ 372 (559)
.+.....|.+ ++. .....|. .. +-|..+.. ..+-++. +.+|+| +.|...
T Consensus 134 ---~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~----------- 199 (342)
T PF07893_consen 134 ---RPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW----------- 199 (342)
T ss_pred ---CccceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCce-----------
Confidence 0000023333 311 1123444 44 33333332 3334444 447888 444321
Q ss_pred CcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceEEeC
Q 048136 373 CFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGG 417 (559)
Q Consensus 373 ~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~G 417 (559)
-...||-++. +|+....=..|= ++-|.-.++-..++.=
T Consensus 200 --GTysfDt~~~---~W~~~GdW~LPF--~G~a~y~~el~~W~Gl 237 (342)
T PF07893_consen 200 --GTYSFDTESH---EWRKHGDWMLPF--HGQAEYVPELDLWFGL 237 (342)
T ss_pred --EEEEEEcCCc---ceeeccceecCc--CCccEECCCcCeEEEe
Confidence 2468898888 999876522221 2334455555555543
No 91
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=72.31 E-value=38 Score=34.52 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=60.1
Q ss_pred CCCCCCcEEecCCCCCcce-eEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCC
Q 048136 31 APYFLGKWELLPNNPGISA-MHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNT 109 (559)
Q Consensus 31 ~~~~~g~W~~~~~~~~~~~-~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t 109 (559)
++....+|+.+... +.. ++....-.+++||+.|....+ |. .......||.++
T Consensus 21 yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~----------~~---------------~~~~la~yd~~~ 73 (281)
T PF12768_consen 21 YDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLN----------GT---------------NSSNLATYDFKN 73 (281)
T ss_pred EECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEEC----------CC---------------CceeEEEEecCC
Confidence 35678999987653 433 333332146677777754311 10 123478999999
Q ss_pred CCEEeCccCC-----CcccccCeecCCC-cEEEEcCCCCCCCeEEEEeCCCCCCeecCCC
Q 048136 110 LQVTPLKVIT-----DTWCSSGGLDVNG-NLISTGGFLGGSRTTRYLWGCPTCDWTEYPT 163 (559)
Q Consensus 110 ~~w~~~~~~~-----~~~c~~~~~l~dG-~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~ 163 (559)
++|+.+.... ...-.......|+ ++++.|....+...+..|| ..+|..+..
T Consensus 74 ~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d---Gs~W~~i~~ 130 (281)
T PF12768_consen 74 QTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD---GSSWSSIGS 130 (281)
T ss_pred CeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc---CCceEeccc
Confidence 9999887632 1111111122244 5777776555667788887 567988753
No 92
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=71.49 E-value=2e+02 Score=33.18 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=30.5
Q ss_pred eeEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCC
Q 048136 101 HSVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGC 153 (559)
Q Consensus 101 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 153 (559)
+-.+|+-.++++---..-|-.+-.....-+||.++++|+. | .+|.+||..
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e-D--gKVKvWn~~ 380 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE-D--GKVKVWNTQ 380 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC-C--CcEEEEecc
Confidence 3456665555543222222223333455689999999997 3 578889976
No 93
>PRK13684 Ycf48-like protein; Provisional
Probab=70.81 E-value=1.4e+02 Score=31.10 Aligned_cols=75 Identities=16% Similarity=0.360 Sum_probs=43.7
Q ss_pred CceeeecCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCcccee-eeEE
Q 048136 329 PVWTTEKMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHS-VANL 407 (559)
Q Consensus 329 ~~W~~~~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs-~a~l 407 (559)
.+|+..+.+..+...+.+..++|+++++|.. |. .++. .++.|.+|+..........++- ....
T Consensus 204 ~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~--G~-------------~~~~-s~d~G~sW~~~~~~~~~~~~~l~~v~~ 267 (334)
T PRK13684 204 TAWTPHQRNSSRRLQSMGFQPDGNLWMLARG--GQ-------------IRFN-DPDDLESWSKPIIPEITNGYGYLDLAY 267 (334)
T ss_pred CeEEEeeCCCcccceeeeEcCCCCEEEEecC--CE-------------EEEc-cCCCCCccccccCCccccccceeeEEE
Confidence 4798875555566565667789999998753 21 2221 3456679996532111111211 2334
Q ss_pred CCCCceEEeCCC
Q 048136 408 LPDGRVFVGGSN 419 (559)
Q Consensus 408 lpdG~Vlv~GG~ 419 (559)
.++++++++|..
T Consensus 268 ~~~~~~~~~G~~ 279 (334)
T PRK13684 268 RTPGEIWAGGGN 279 (334)
T ss_pred cCCCCEEEEcCC
Confidence 678899988864
No 94
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=70.27 E-value=1.3e+02 Score=32.07 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=109.9
Q ss_pred eEEEeCCCCCEEeCccC--CCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCcccc--ccccceEEEc
Q 048136 102 SVFYNVNTLQVTPLKVI--TDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKD--GRWYATQALL 177 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~--~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~--~R~y~s~~~L 177 (559)
+.+|+..+. +++... |..+-+..++-++|+.+.++-++ .+-++||.. +.+ ++ -|+. .+.-++.+--
T Consensus 243 vklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD---~tWRlWD~~-tk~--El--L~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 243 VKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFD---STWRLWDLE-TKS--EL--LLQEGHSKGVFSIAFQ 312 (459)
T ss_pred eeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccc---cchhhcccc-cch--hh--HhhcccccccceeEec
Confidence 556665543 444433 33455667778899999998773 566778876 433 22 1332 3445666777
Q ss_pred cCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEeeCCCCeEE
Q 048136 178 ADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLDPRANYVL 254 (559)
Q Consensus 178 ~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t~~W~ 254 (559)
+||.+.+.||.+.. ..+| -.++. ... ++....+ ..| .+.-.|||...+.|+ +++-+||.+..+-
T Consensus 313 ~DGSL~~tGGlD~~-~RvWDlRtgr---~im---~L~gH~k----~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~- 379 (459)
T KOG0272|consen 313 PDGSLAATGGLDSL-GRVWDLRTGR---CIM---FLAGHIK----EIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRSE- 379 (459)
T ss_pred CCCceeeccCccch-hheeecccCc---EEE---Eeccccc----cee-eEeECCCceEEeecCCCCcEEEeeeccccc-
Confidence 79999999998752 2344 33321 111 1222111 011 223357898888886 4677888876542
Q ss_pred EECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee
Q 048136 255 REYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE 334 (559)
Q Consensus 255 ~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~ 334 (559)
+-.||.. .+- =+-|-+- | ..|+.++..+++. ++-++. +..|+..
T Consensus 380 --ly~ipAH-~nl---VS~Vk~~--p-------~~g~fL~TasyD~-----------------t~kiWs----~~~~~~~ 423 (459)
T KOG0272|consen 380 --LYTIPAH-SNL---VSQVKYS--P-------QEGYFLVTASYDN-----------------TVKIWS----TRTWSPL 423 (459)
T ss_pred --ceecccc-cch---hhheEec--c-------cCCeEEEEcccCc-----------------ceeeec----CCCcccc
Confidence 3334531 111 0111110 0 2577888877652 111222 2467765
Q ss_pred -cC--CCCcccccEEEeeCCeEEEEcCcC
Q 048136 335 -KM--PTPRVMSDGVLLPTGDVLLINGAE 360 (559)
Q Consensus 335 -~M--~~~R~~~~av~LpdG~V~vvGG~~ 360 (559)
.| ...+.+.. -+-+|+..++.++.+
T Consensus 424 ksLaGHe~kV~s~-Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 424 KSLAGHEGKVISL-DISPDSQAIATSSFD 451 (459)
T ss_pred hhhcCCccceEEE-EeccCCceEEEeccC
Confidence 44 45566663 466788888877765
No 95
>PTZ00421 coronin; Provisional
Probab=69.93 E-value=1.8e+02 Score=32.13 Aligned_cols=107 Identities=13% Similarity=0.028 Sum_probs=56.7
Q ss_pred CCcEEEEcCCCCCCCeEEEEeCCCCCCee-----cCCCccc-cccccceEEEccC-CcEEEEcCCCCCceeEE-cCCCCC
Q 048136 131 NGNLISTGGFLGGSRTTRYLWGCPTCDWT-----EYPTALK-DGRWYATQALLAD-GSFLIFGGRDSFSYEYI-PAERTE 202 (559)
Q Consensus 131 dG~i~v~GG~~~g~~~v~~ydp~~t~~W~-----~~~~~m~-~~R~y~s~~~L~d-G~VyvvGG~~~~s~E~y-P~~~~~ 202 (559)
|+.++++|+. | ..+.+||.. +.... .+.. +. +.+.-.+++.-++ +.+++.||.+. ++.+| ..+++
T Consensus 87 d~~~LaSgS~-D--gtIkIWdi~-~~~~~~~~~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~Dg-tVrIWDl~tg~- 159 (493)
T PTZ00421 87 DPQKLFTASE-D--GTIMGWGIP-EEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADM-VVNVWDVERGK- 159 (493)
T ss_pred CCCEEEEEeC-C--CEEEEEecC-CCccccccCcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCC-EEEEEECCCCe-
Confidence 7788888886 3 478889865 33211 1111 22 1222223333444 36888888754 56677 44321
Q ss_pred CCcceeccccccccccccCCccceEEEeeCCcEEEEecC--cEEEeeCCCCeEE
Q 048136 203 NAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN--RSILLDPRANYVL 254 (559)
Q Consensus 203 ~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~--~~e~yDp~t~~W~ 254 (559)
....+ ....+ ..+ .+...++|++++.|+. .+.+||+++++-.
T Consensus 160 ----~~~~l-~~h~~----~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 160 ----AVEVI-KCHSD----QIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred ----EEEEE-cCCCC----ceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEE
Confidence 11111 11100 011 1223468999988864 5789999987644
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=69.40 E-value=1.3e+02 Score=30.15 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=40.4
Q ss_pred cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceE
Q 048136 335 KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVF 414 (559)
Q Consensus 335 ~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vl 414 (559)
.||..-.. +-+-|+-.+||.||.+. .+..||=.|++- -... .-..+---| +.-..|||.+|
T Consensus 222 k~P~nV~S--ASL~P~k~~fVaGged~-------------~~~kfDy~TgeE--i~~~-nkgh~gpVh-cVrFSPdGE~y 282 (334)
T KOG0278|consen 222 KMPCNVES--ASLHPKKEFFVAGGEDF-------------KVYKFDYNTGEE--IGSY-NKGHFGPVH-CVRFSPDGELY 282 (334)
T ss_pred cCcccccc--ccccCCCceEEecCcce-------------EEEEEeccCCce--eeec-ccCCCCceE-EEEECCCCcee
Confidence 56654333 34668999999999762 456677666521 1000 000111125 35578999999
Q ss_pred EeCCCCC
Q 048136 415 VGGSNDN 421 (559)
Q Consensus 415 v~GG~~~ 421 (559)
..|+.+.
T Consensus 283 AsGSEDG 289 (334)
T KOG0278|consen 283 ASGSEDG 289 (334)
T ss_pred eccCCCc
Confidence 9999864
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=68.28 E-value=97 Score=33.22 Aligned_cols=144 Identities=13% Similarity=0.144 Sum_probs=75.4
Q ss_pred ccceEEEeeCCcEEEEecC--cEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCC
Q 048136 223 LYPFVYLVPDGNLYIFANN--RSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVP 300 (559)
Q Consensus 223 ~yp~~~~l~~G~iyv~Gg~--~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~ 300 (559)
.|..+..-|||.||..|-. .+.+||.+...- +...|+. ++..-.+... -||--++++-.+
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~---~a~Fpgh------t~~vk~i~Fs--------ENGY~Lat~add- 410 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKFPGH------TGPVKAISFS--------ENGYWLATAADD- 410 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCccc---cccCCCC------CCceeEEEec--------cCceEEEEEecC-
Confidence 3666677789999999864 467899887752 3333321 1111111110 244445544221
Q ss_pred ccccccccccccccccCceEEEEecCCCCceeeecCCCCcccccEEEe-eCCeEEEEcCcCCCCCCccCCCCCCcccEEE
Q 048136 301 EAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTEKMPTPRVMSDGVLL-PTGDVLLINGAELGSAGWKDADKPCFKPLLY 379 (559)
Q Consensus 301 ~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~~M~~~R~~~~av~L-pdG~V~vvGG~~~g~~g~~~~~~~~~~~e~Y 379 (559)
.++-++|+..-. -.....++... ..+++.+ ..|+.++++|.+ .++.+|
T Consensus 411 ----------------~~V~lwDLRKl~-n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~-------------l~Vy~~ 459 (506)
T KOG0289|consen 411 ----------------GSVKLWDLRKLK-NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSD-------------LQVYIC 459 (506)
T ss_pred ----------------CeEEEEEehhhc-ccceeeccccc-cceeEEEcCCCCeEEeecce-------------eEEEEE
Confidence 236678887421 11122333322 1222222 458888888754 378899
Q ss_pred eCCCCCCCeEEecCCCCCCccceeee-EECCCCceEEeCCC
Q 048136 380 KPSKPPGSRFTELAPSDIPRMYHSVA-NLLPDGRVFVGGSN 419 (559)
Q Consensus 380 DP~t~~g~~Wt~~~~~~~~R~yhs~a-~llpdG~Vlv~GG~ 419 (559)
+-.+. +|+.+...+..- .-++. -+--+.+++..||.
T Consensus 460 ~k~~k---~W~~~~~~~~~s-g~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 460 KKKTK---SWTEIKELADHS-GLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred ecccc---cceeeehhhhcc-cccceeeecccceEEeeccc
Confidence 99999 999886554321 11222 23234455555654
No 98
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=67.36 E-value=88 Score=33.16 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=52.9
Q ss_pred ceeeEEEeCCCCCEE-eCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccc-cccccceEEE
Q 048136 99 WCHSVFYNVNTLQVT-PLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALK-DGRWYATQAL 176 (559)
Q Consensus 99 ~~~~~~yDp~t~~w~-~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~-~~R~y~s~~~ 176 (559)
-..+.+||..|++-. .+. |.-.|-+..+-.||.++++.-. .++++++||. +.+-..-. |. .+--..-+.-
T Consensus 153 Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr-~~~~v~e~--~~heG~k~~Raif 224 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCK---DKKVRVIDPR-RGTVVSEG--VAHEGAKPARAIF 224 (472)
T ss_pred CceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecc---cceeEEEcCC-CCcEeeec--ccccCCCcceeEE
Confidence 344778888887632 222 3334444555568888877543 3799999999 66533221 22 2222334667
Q ss_pred ccCCcEEEEcCCCC--CceeEE
Q 048136 177 LADGSFLIFGGRDS--FSYEYI 196 (559)
Q Consensus 177 L~dG~VyvvGG~~~--~s~E~y 196 (559)
|.+|+|+..|=+.- ..+-+|
T Consensus 225 l~~g~i~tTGfsr~seRq~aLw 246 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALW 246 (472)
T ss_pred eccCceeeeccccccccceecc
Confidence 88999888875432 334445
No 99
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=66.33 E-value=11 Score=39.30 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=37.2
Q ss_pred eeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccce--eeeEECCCCceEEeCCCCC
Q 048136 348 LPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYH--SVANLLPDGRVFVGGSNDN 421 (559)
Q Consensus 348 LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yh--s~a~llpdG~Vlv~GG~~~ 421 (559)
-|+|+.++.|+.+ .++.+||+.|. + +.-...+.+| .+..-.|||+.++.|+-.+
T Consensus 124 sp~g~~l~tGsGD-------------~TvR~WD~~Te---T----p~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 124 SPTGSRLVTGSGD-------------TTVRLWDLDTE---T----PLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred cCCCceEEecCCC-------------ceEEeeccCCC---C----cceeecCCccEEEEEEECCCcchhhccccCC
Confidence 3799999998754 27899999987 1 1112233334 3445689999999998654
No 100
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=64.20 E-value=2.2e+02 Score=34.72 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=36.6
Q ss_pred EEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCC----------CCcc-ceeeeEECCCCce
Q 048136 345 GVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSD----------IPRM-YHSVANLLPDGRV 413 (559)
Q Consensus 345 av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~----------~~R~-yhs~a~llpdG~V 413 (559)
.++-+||+|||....+ ..+.+||+++. ..+.++..- ..+. .....++.+||+|
T Consensus 809 vavd~dG~LYVADs~N-------------~rIrviD~~tg---~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l 872 (1057)
T PLN02919 809 VLCAKDGQIYVADSYN-------------HKIKKLDPATK---RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL 872 (1057)
T ss_pred eeEeCCCcEEEEECCC-------------CEEEEEECCCC---eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE
Confidence 3456889999986432 26899999887 655433211 0111 1123456689999
Q ss_pred EEeCCCC
Q 048136 414 FVGGSND 420 (559)
Q Consensus 414 lv~GG~~ 420 (559)
||+-.+.
T Consensus 873 yVaDt~N 879 (1057)
T PLN02919 873 FVADTNN 879 (1057)
T ss_pred EEEECCC
Confidence 9986543
No 101
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=63.03 E-value=2.3e+02 Score=30.84 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=46.0
Q ss_pred EEeCCCCCEEeCccC--CCccccc-C--eecCCCcEEEEcCCCCCC--CeE-----------EEEeCCCCCCeecCCCcc
Q 048136 104 FYNVNTLQVTPLKVI--TDTWCSS-G--GLDVNGNLISTGGFLGGS--RTT-----------RYLWGCPTCDWTEYPTAL 165 (559)
Q Consensus 104 ~yDp~t~~w~~~~~~--~~~~c~~-~--~~l~dG~i~v~GG~~~g~--~~v-----------~~ydp~~t~~W~~~~~~m 165 (559)
.|+|.-+.|..+... ....|.+ + +..-||.||.-|=..+|. +.+ .-+|.. ...|++. .|
T Consensus 90 ~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~-~~~~tP~--~v 166 (476)
T COG5184 90 VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDY-ELESTPF--KV 166 (476)
T ss_pred ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchh-hcccCCc--ee
Confidence 688888888754433 3445652 2 334489999998543331 222 112222 1223221 11
Q ss_pred cc--------------ccccceEEEccCCcEEEEcCC
Q 048136 166 KD--------------GRWYATQALLADGSFLIFGGR 188 (559)
Q Consensus 166 ~~--------------~R~y~s~~~L~dG~VyvvGG~ 188 (559)
+. .-|..+++...||+||..|..
T Consensus 167 ~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~ 203 (476)
T COG5184 167 PGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF 203 (476)
T ss_pred eccccccCChheEEeecCCceEEEEccCCcEEEecCc
Confidence 11 235677888889999999984
No 102
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.89 E-value=1.6e+02 Score=30.46 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=55.8
Q ss_pred EEEee-CCcEEEEe---cCcEEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCcc
Q 048136 227 VYLVP-DGNLYIFA---NNRSILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEA 302 (559)
Q Consensus 227 ~~~l~-~G~iyv~G---g~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~ 302 (559)
++..+ ++.+.+|+ |.-..+||+.+++-.+.+.+ |. .|.+ .|+++..+ +|+.+..==. .
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~-gRHF--yGHg~fs~-----------dG~~LytTEn---d 71 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PP-GRHF--YGHGVFSP-----------DGRLLYTTEN---D 71 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CC-CCEE--ecCEEEcC-----------CCCEEEEecc---c
Confidence 34455 56677777 45678999999876544543 22 2443 47887653 5555544211 1
Q ss_pred ccccccccccccccCceEEEEecCCCCceeee-cCC-CCcccccEEEeeCC-eEEEEcC
Q 048136 303 FYFGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMP-TPRVMSDGVLLPTG-DVLLING 358 (559)
Q Consensus 303 ~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~-~~R~~~~av~LpdG-~V~vvGG 358 (559)
+. ....-+.+||.. ..+... ..+ .+-.-|....+||| .+.|.+|
T Consensus 72 ~~---------~g~G~IgVyd~~---~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 72 YE---------TGRGVIGVYDAA---RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred cC---------CCcEEEEEEECc---CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 11 122234456654 344443 333 23344667889999 5656555
No 103
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=60.26 E-value=35 Score=34.75 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=38.5
Q ss_pred ccceeeEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCC--CC--CCeEEEEeCCCCCCeecCCC
Q 048136 97 DCWCHSVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFL--GG--SRTTRYLWGCPTCDWTEYPT 163 (559)
Q Consensus 97 ~~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~--~g--~~~v~~ydp~~t~~W~~~~~ 163 (559)
+|.. ...||+.+.+|..+..-..-- -......++.-+++||.. ++ ...+-.||.. +.+|+.+..
T Consensus 14 ~C~~-lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~-~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPG-LCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK-NQTWSSLGG 81 (281)
T ss_pred CCCE-EEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecC-CCeeeecCC
Confidence 4544 789999999999876431110 012233344444444432 22 3467789999 899987754
No 104
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=58.76 E-value=1.7e+02 Score=30.77 Aligned_cols=183 Identities=18% Similarity=0.209 Sum_probs=86.9
Q ss_pred cccceEEEccCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEE--e-cCcEE
Q 048136 169 RWYATQALLADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIF--A-NNRSI 244 (559)
Q Consensus 169 R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~--G-g~~~e 244 (559)
-|--++++-+.+.-|+.|..+ .+..+| -++++ ..+.+ .... .--..+.+.+-+=|+| | +..+-
T Consensus 152 gWVr~vavdP~n~wf~tgs~D-rtikIwDlatg~-----Lkltl-tGhi------~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSAD-RTIKIWDLATGQ-----LKLTL-TGHI------ETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred ceEEEEeeCCCceeEEecCCC-ceeEEEEcccCe-----EEEee-cchh------heeeeeeecccCceEEEecCCCeeE
Confidence 355567777777777777655 345566 44331 11111 1000 0000111222223333 2 34678
Q ss_pred EeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEe
Q 048136 245 LLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVV 324 (559)
Q Consensus 245 ~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~ 324 (559)
|||...|+..+.. |.+-.+.-.|.+.| .-.+++.||.+ .++-++|+
T Consensus 219 CwDLe~nkvIR~Y---------hGHlS~V~~L~lhP--------Tldvl~t~grD-----------------st~RvWDi 264 (460)
T KOG0285|consen 219 CWDLEYNKVIRHY---------HGHLSGVYCLDLHP--------TLDVLVTGGRD-----------------STIRVWDI 264 (460)
T ss_pred EEechhhhhHHHh---------ccccceeEEEeccc--------cceeEEecCCc-----------------ceEEEeee
Confidence 9999999865322 22111222344333 35688888875 24455666
Q ss_pred cCCCCceeee--cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccce
Q 048136 325 TSPDPVWTTE--KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYH 402 (559)
Q Consensus 325 ~~~~~~W~~~--~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yh 402 (559)
.+..+.-... ..+..+.+... .|++|+- |... .++-+||-..+. +-..+... .+.-
T Consensus 265 Rtr~~V~~l~GH~~~V~~V~~~~---~dpqvit--~S~D------------~tvrlWDl~agk--t~~tlt~h--kksv- 322 (460)
T KOG0285|consen 265 RTRASVHVLSGHTNPVASVMCQP---TDPQVIT--GSHD------------STVRLWDLRAGK--TMITLTHH--KKSV- 322 (460)
T ss_pred cccceEEEecCCCCcceeEEeec---CCCceEE--ecCC------------ceEEEeeeccCc--eeEeeecc--ccee-
Confidence 6422222221 34555555432 2777764 2221 167888887761 22222211 1111
Q ss_pred eeeEECCCCceEEeCCCC
Q 048136 403 SVANLLPDGRVFVGGSND 420 (559)
Q Consensus 403 s~a~llpdG~Vlv~GG~~ 420 (559)
-+.+|-|+-..++.++-+
T Consensus 323 ral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 323 RALCLHPKENLFASASPD 340 (460)
T ss_pred eEEecCCchhhhhccCCc
Confidence 133455666666666643
No 105
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=57.74 E-value=2.2e+02 Score=28.91 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=73.2
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCC-
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADG- 180 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG- 180 (559)
..+||.++.+=+..-.-|..---+.++-+|.+-+|.|-.+ +++..||....++.+.. ..+. .-|-.++...|+.
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD---kTiklwnt~g~ck~t~~-~~~~-~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD---KTIKLWNTLGVCKYTIH-EDSH-REWVSCVRFSPNES 161 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc---ceeeeeeecccEEEEEe-cCCC-cCcEEEEEEcCCCC
Confidence 6788888765443322221111123456788888887652 78888887623344333 2243 4576666667763
Q ss_pred cEEEEcCCCCCceeEEcCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecCcEE--EeeCCCCe
Q 048136 181 SFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRSI--LLDPRANY 252 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~yP~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e--~yDp~t~~ 252 (559)
..+++.+...+++.+|-..+ .. ...+.... ...-..+.+.|||.+-+.||.+.+ ++|....+
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~----~~-l~~~~~gh-----~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRN----CQ-LRTTFIGH-----SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CcEEEEccCCceEEEEccCC----cc-hhhccccc-----cccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 44555554456777773222 11 11111111 111223456789999999998654 45555443
No 106
>PRK04792 tolB translocation protein TolB; Provisional
Probab=57.35 E-value=2.1e+02 Score=31.04 Aligned_cols=91 Identities=11% Similarity=0.079 Sum_probs=54.2
Q ss_pred eeEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCC
Q 048136 101 HSVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADG 180 (559)
Q Consensus 101 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG 180 (559)
....+|..+++.+.+.... .........+||+.+++....++...++++|.. +.++..+.. ...+..+.+.-+||
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt~---~g~~~~~~~~SpDG 361 (448)
T PRK04792 287 EIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLTF---EGEQNLGGSITPDG 361 (448)
T ss_pred EEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEec---CCCCCcCeeECCCC
Confidence 3566788888888775422 112234456798866654443455688889988 777776531 23333444556788
Q ss_pred cEEEEcCCCCCceeEE
Q 048136 181 SFLIFGGRDSFSYEYI 196 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~y 196 (559)
+.++..........+|
T Consensus 362 ~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 362 RSMIMVNRTNGKFNIA 377 (448)
T ss_pred CEEEEEEecCCceEEE
Confidence 7776655443334444
No 107
>PLN00181 protein SPA1-RELATED; Provisional
Probab=57.32 E-value=2.9e+02 Score=32.32 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=63.8
Q ss_pred eeEEEeCCCCCEE-eCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccc-cccccceEEEcc
Q 048136 101 HSVFYNVNTLQVT-PLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALK-DGRWYATQALLA 178 (559)
Q Consensus 101 ~~~~yDp~t~~w~-~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~-~~R~y~s~~~L~ 178 (559)
.+.+||..+.+.. .+. .+...|.....-.+|.++++|+. + ..+.+||.. +.+ ..+.. +. +...-..+.. .
T Consensus 599 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~g~~latgs~-d--g~I~iwD~~-~~~-~~~~~-~~~h~~~V~~v~f-~ 670 (793)
T PLN00181 599 SVKLWSINQGVSIGTIK-TKANICCVQFPSESGRSLAFGSA-D--HKVYYYDLR-NPK-LPLCT-MIGHSKTVSYVRF-V 670 (793)
T ss_pred EEEEEECCCCcEEEEEe-cCCCeEEEEEeCCCCCEEEEEeC-C--CeEEEEECC-CCC-ccceE-ecCCCCCEEEEEE-e
Confidence 3778888765432 111 11111111111247899999876 3 489999986 432 11111 11 1111122333 3
Q ss_pred CCcEEEEcCCCCCceeEE-cCCCC-CCCcceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEeeCCC
Q 048136 179 DGSFLIFGGRDSFSYEYI-PAERT-ENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLDPRA 250 (559)
Q Consensus 179 dG~VyvvGG~~~~s~E~y-P~~~~-~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t 250 (559)
++..++.|+.++ ++.+| ..... ...+..+..+ ... .+.-..+...++|++++.|+ ..+.+||...
T Consensus 671 ~~~~lvs~s~D~-~ikiWd~~~~~~~~~~~~l~~~-~gh-----~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 671 DSSTLVSSSTDN-TLKLWDLSMSISGINETPLHSF-MGH-----TNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCCEEEEEECCC-EEEEEeCCCCccccCCcceEEE-cCC-----CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 788888887664 46677 32210 0012111111 110 00111233456788888886 3566777654
No 108
>PTZ00420 coronin; Provisional
Probab=56.61 E-value=3.4e+02 Score=30.67 Aligned_cols=107 Identities=17% Similarity=0.074 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCCCCeEEEEeCCCCCC--eecCCC---ccc-cccccceEEEccCCc-EEEEcCCCCCceeEE-cCCCCC
Q 048136 131 NGNLISTGGFLGGSRTTRYLWGCPTCD--WTEYPT---ALK-DGRWYATQALLADGS-FLIFGGRDSFSYEYI-PAERTE 202 (559)
Q Consensus 131 dG~i~v~GG~~~g~~~v~~ydp~~t~~--W~~~~~---~m~-~~R~y~s~~~L~dG~-VyvvGG~~~~s~E~y-P~~~~~ 202 (559)
++.++++||. + ..+++||.. +.. -..+.. .+. +.+.-.+++.-+++. +++.||.+ .++.+| ..+..
T Consensus 86 ~~~lLASgS~-D--gtIrIWDi~-t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D-gtIrIWDl~tg~- 159 (568)
T PTZ00420 86 FSEILASGSE-D--LTIRVWEIP-HNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD-SFVNIWDIENEK- 159 (568)
T ss_pred CCCEEEEEeC-C--CeEEEEECC-CCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC-CeEEEEECCCCc-
Confidence 3788999886 3 478899975 321 111000 011 122222333444565 44566655 457777 44321
Q ss_pred CCcceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEeeCCCCeEE
Q 048136 203 NAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLDPRANYVL 254 (559)
Q Consensus 203 ~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yDp~t~~W~ 254 (559)
....+... + .. ..+...++|++++.++ ..+.+||+++++-.
T Consensus 160 ----~~~~i~~~--~----~V-~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 160 ----RAFQINMP--K----KL-SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred ----EEEEEecC--C----cE-EEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 11111000 0 01 1223346999998875 46899999987644
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=55.15 E-value=1.4e+02 Score=30.60 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=48.1
Q ss_pred eEEEeCCCCCEEeCccCC-CcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCC
Q 048136 102 SVFYNVNTLQVTPLKVIT-DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADG 180 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~-~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG 180 (559)
+..||..+++-..+..-. ..+|-... ..-..+|.|||. +++.++||+ . +-....- ++..+-| ++. + .|
T Consensus 77 vr~~Dln~~~~~~igth~~~i~ci~~~--~~~~~vIsgsWD---~~ik~wD~R-~-~~~~~~~-d~~kkVy-~~~-v-~g 145 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQIGTHDEGIRCIEYS--YEVGCVISGSWD---KTIKFWDPR-N-KVVVGTF-DQGKKVY-CMD-V-SG 145 (323)
T ss_pred EEEEEecCCcceeeccCCCceEEEEee--ccCCeEEEcccC---ccEEEEecc-c-ccccccc-ccCceEE-EEe-c-cC
Confidence 788998887766554221 12443222 334467899994 689999998 4 2222221 3444443 343 3 46
Q ss_pred cEEEEcCCCCCceeEE
Q 048136 181 SFLIFGGRDSFSYEYI 196 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~y 196 (559)
..+|+|+.+. .+-+|
T Consensus 146 ~~LvVg~~~r-~v~iy 160 (323)
T KOG1036|consen 146 NRLVVGTSDR-KVLIY 160 (323)
T ss_pred CEEEEeecCc-eEEEE
Confidence 7788888654 35556
No 110
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=53.56 E-value=84 Score=31.10 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=67.1
Q ss_pred CCCCEEeCccC-CC-cccccC-eecCCCcEEEEcCCCCCCCeEE-EEeCCCCCCeecCCC-ccccccccceEEEccCCcE
Q 048136 108 NTLQVTPLKVI-TD-TWCSSG-GLDVNGNLISTGGFLGGSRTTR-YLWGCPTCDWTEYPT-ALKDGRWYATQALLADGSF 182 (559)
Q Consensus 108 ~t~~w~~~~~~-~~-~~c~~~-~~l~dG~i~v~GG~~~g~~~v~-~ydp~~t~~W~~~~~-~m~~~R~y~s~~~L~dG~V 182 (559)
.-.+|+..... .. ..|... +.+.||+|+++--.. +..... .+......+|++... .++..........+.+|++
T Consensus 143 ~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~ 221 (275)
T PF13088_consen 143 GGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GNDDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRL 221 (275)
T ss_dssp TTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SSTEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEE
T ss_pred CCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCCcEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCE
Confidence 34568876654 22 333333 345799999885432 112222 223221467987431 2455555555667889999
Q ss_pred EEEcCCCC--CceeEE--cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEE
Q 048136 183 LIFGGRDS--FSYEYI--PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYI 237 (559)
Q Consensus 183 yvvGG~~~--~s~E~y--P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv 237 (559)
+++..... ...-++ ...+ ..|.....+.... ...-.||.+..+.||+|+|
T Consensus 222 ~~~~~~~~~r~~l~l~~S~D~g--~tW~~~~~i~~~~---~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 222 LLVYNNPDGRSNLSLYVSEDGG--KTWSRPKTIDDGP---NGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEECSSTSEEEEEEEECTTC--EEEEEEEEEEEEE----CCEEEEEEEEEETTEEEE
T ss_pred EEEEECCCCCCceEEEEEeCCC--CcCCccEEEeCCC---CCcEECCeeEEeCCCcCCC
Confidence 99988422 223344 2223 2465443332211 0123699999999999986
No 111
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=53.25 E-value=84 Score=35.82 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=55.3
Q ss_pred CCccceeeEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccc-cce
Q 048136 95 NIDCWCHSVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRW-YAT 173 (559)
Q Consensus 95 ~~~~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~-y~s 173 (559)
..|++ +.+||..++.-..+-.-|...-.+-.+-++|+-++.|+. + ..+.+||-. +.+= +.. |..... -.+
T Consensus 554 SsD~t--VRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e-d--~~I~iWDl~-~~~~--v~~-l~~Ht~ti~S 624 (707)
T KOG0263|consen 554 SSDRT--VRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE-D--GLIKIWDLA-NGSL--VKQ-LKGHTGTIYS 624 (707)
T ss_pred CCCce--EEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc-C--CcEEEEEcC-CCcc--hhh-hhcccCceeE
Confidence 33444 899999888765554333332233445579999999986 3 467889977 4331 111 322221 123
Q ss_pred EEEccCCcEEEEcCCCCCceeEE
Q 048136 174 QALLADGSFLIFGGRDSFSYEYI 196 (559)
Q Consensus 174 ~~~L~dG~VyvvGG~~~~s~E~y 196 (559)
...-.||.|+|+||.+. ++.+|
T Consensus 625 lsFS~dg~vLasgg~Dn-sV~lW 646 (707)
T KOG0263|consen 625 LSFSRDGNVLASGGADN-SVRLW 646 (707)
T ss_pred EEEecCCCEEEecCCCC-eEEEE
Confidence 33334999999999874 45555
No 112
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.36 E-value=4.3e+02 Score=30.62 Aligned_cols=101 Identities=18% Similarity=0.263 Sum_probs=56.3
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEEeCCCCC-CeecCCCccccccccceEEEccCCcEEEEcCCCCCceeEE---cCCCCCC
Q 048136 128 LDVNGNLISTGGFLGGSRTTRYLWGCPTC-DWTEYPTALKDGRWYATQALLADGSFLIFGGRDSFSYEYI---PAERTEN 203 (559)
Q Consensus 128 ~l~dG~i~v~GG~~~g~~~v~~ydp~~t~-~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y---P~~~~~~ 203 (559)
+..+|++++.--. || +|+.||-. .- .++... -+.++...++++-+.|.|.++|+.+. +|+| -++++
T Consensus 400 f~~~g~~llssSL-DG--tVRAwDlk-RYrNfRTft--~P~p~QfscvavD~sGelV~AG~~d~--F~IfvWS~qTGq-- 469 (893)
T KOG0291|consen 400 FTARGNVLLSSSL-DG--TVRAWDLK-RYRNFRTFT--SPEPIQFSCVAVDPSGELVCAGAQDS--FEIFVWSVQTGQ-- 469 (893)
T ss_pred EEecCCEEEEeec-CC--eEEeeeec-ccceeeeec--CCCceeeeEEEEcCCCCEEEeeccce--EEEEEEEeecCe--
Confidence 4457777776544 33 67888865 22 233332 24556555555555599999999875 5555 33331
Q ss_pred CcceeccccccccccccCCccceE--EEeeCCcEEEEec--CcEEEeeCC
Q 048136 204 AYSIPFQFLRDTYDVLENNLYPFV--YLVPDGNLYIFAN--NRSILLDPR 249 (559)
Q Consensus 204 ~w~~~~p~l~~~~d~~~~~~yp~~--~~l~~G~iyv~Gg--~~~e~yDp~ 249 (559)
....|... ..|-. ..-++|.+.+.|. +++.+||.-
T Consensus 470 ----llDiLsGH-------EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 470 ----LLDILSGH-------EGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred ----eeehhcCC-------CCcceeeEEccccCeEEeccccceEEEEEee
Confidence 23333321 12222 2345788887774 456666653
No 113
>PRK01742 tolB translocation protein TolB; Provisional
Probab=50.93 E-value=3.4e+02 Score=29.07 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=70.0
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
...+|..+++-+.+..... .......-+||+.++++...++...++.+|.. +.+...+.. ..--....+--+||+
T Consensus 230 i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~lt~---~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 230 LVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQLTS---GAGNNTEPSWSPDGQ 304 (429)
T ss_pred EEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEeecc---CCCCcCCEEECCCCC
Confidence 5678888777655543321 11234667899877776543454567778887 666555432 111122344556887
Q ss_pred EEEEcCCCCCceeEE--cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEE-ecCcEEEeeCCCCeEE
Q 048136 182 FLIFGGRDSFSYEYI--PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIF-ANNRSILLDPRANYVL 254 (559)
Q Consensus 182 VyvvGG~~~~s~E~y--P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~-Gg~~~e~yDp~t~~W~ 254 (559)
-+++........++| +... .... .+.. .. +. ....+||+..++ ++....++|..++++.
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~---~~~~---~l~~------~~-~~-~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASG---GGAS---LVGG------RG-YS-AQISADGKTLVMINGDNVVKQDLTSGSTE 366 (429)
T ss_pred EEEEEECCCCCceEEEEECCC---CCeE---EecC------CC-CC-ccCCCCCCEEEEEcCCCEEEEECCCCCeE
Confidence 544433222234566 2221 1111 1110 01 21 224678875554 4456777899888776
No 114
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=49.91 E-value=32 Score=34.81 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=50.8
Q ss_pred cCCCCcccccE-EEeeCCe--EEEEcCcCCCCC------CccCCCCCCcccEEEeCCCCCCCeEE--ecCCCCCCcccee
Q 048136 335 KMPTPRVMSDG-VLLPTGD--VLLINGAELGSA------GWKDADKPCFKPLLYKPSKPPGSRFT--ELAPSDIPRMYHS 403 (559)
Q Consensus 335 ~M~~~R~~~~a-v~LpdG~--V~vvGG~~~g~~------g~~~~~~~~~~~e~YDP~t~~g~~Wt--~~~~~~~~R~yhs 403 (559)
+.|.+|..|+. |+--.|| +.++||+..-.. .|..--+-..++.+.|.+-. ..+ .++.+.....+|
T Consensus 83 dvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG---C~tah~lpEl~dG~SFH- 158 (337)
T PF03089_consen 83 DVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG---CCTAHTLPELQDGQSFH- 158 (337)
T ss_pred CCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc---ccccccchhhcCCeEEE-
Confidence 78999999874 3334554 566788653111 12111111124566677766 555 467788888888
Q ss_pred eeEECCCCceEEeCCCCC
Q 048136 404 VANLLPDGRVFVGGSNDN 421 (559)
Q Consensus 404 ~a~llpdG~Vlv~GG~~~ 421 (559)
..|.-+..||+.||..-
T Consensus 159 -vslar~D~VYilGGHsl 175 (337)
T PF03089_consen 159 -VSLARNDCVYILGGHSL 175 (337)
T ss_pred -EEEecCceEEEEccEEc
Confidence 33557999999999753
No 115
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=49.15 E-value=2.5e+02 Score=31.29 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=59.6
Q ss_pred eeCCcEEEEec-CcEEEeeCCCC--eEEEECCCCCCCCCc---ccCCCceeecccccccccccccCcEEEEEcCCCCccc
Q 048136 230 VPDGNLYIFAN-NRSILLDPRAN--YVLREYPPLPGGARN---YPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAF 303 (559)
Q Consensus 230 l~~G~iyv~Gg-~~~e~yDp~t~--~W~~~~p~mp~~~~~---~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~ 303 (559)
+.+|+||+... ..+..+|.+++ .|.... ..+..... ......++. +.+++||+... +
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~-~~~~~~~~~~~~~~~~rg~a-----------v~~~~v~v~t~-d---- 129 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGKELWKYDP-KLPDDVIPVMCCDVVNRGVA-----------LYDGKVFFGTL-D---- 129 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCceeeEecC-CCCcccccccccccccccce-----------EECCEEEEEcC-C----
Confidence 45888998653 46788898876 465322 22210000 000001111 13678776432 1
Q ss_pred cccccccccccccCceEEEEecCCCCceeee--cCCCCcccccEEEeeCCeEEEEcCcC-CCCCCccCCCCCCcccEEEe
Q 048136 304 YFGEVEKRLVPALDDCARMVVTSPDPVWTTE--KMPTPRVMSDGVLLPTGDVLLINGAE-LGSAGWKDADKPCFKPLLYK 380 (559)
Q Consensus 304 ~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~--~M~~~R~~~~av~LpdG~V~vvGG~~-~g~~g~~~~~~~~~~~e~YD 380 (559)
..+.++|..+....|+.. .+.......++-++.+|+||+..... .+. --.+..||
T Consensus 130 -------------g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~---------~G~v~AlD 187 (527)
T TIGR03075 130 -------------ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGV---------RGYVTAYD 187 (527)
T ss_pred -------------CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCC---------CcEEEEEE
Confidence 234567766555678864 33322222223455689888743211 111 11467788
Q ss_pred CCCCCCCeEE
Q 048136 381 PSKPPGSRFT 390 (559)
Q Consensus 381 P~t~~g~~Wt 390 (559)
.++.+- .|+
T Consensus 188 ~~TG~~-lW~ 196 (527)
T TIGR03075 188 AKTGKL-VWR 196 (527)
T ss_pred CCCCce-eEe
Confidence 877532 465
No 116
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=48.93 E-value=3.4e+02 Score=28.39 Aligned_cols=231 Identities=16% Similarity=0.128 Sum_probs=111.2
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEeCCCCCC--eecCCCccccccccceEEEccCCcEEEEcCCCCCceeEE-cCCCCCC
Q 048136 127 GLDVNGNLISTGGFLGGSRTTRYLWGCPTCD--WTEYPTALKDGRWYATQALLADGSFLIFGGRDSFSYEYI-PAERTEN 203 (559)
Q Consensus 127 ~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~--W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~ 203 (559)
.+..||+||+.- .+| .+..+|+. +.+ |..... .......+-....||+||+-.... .+-++ +.+++ .
T Consensus 64 ~~~~dg~v~~~~--~~G--~i~A~d~~-~g~~~W~~~~~--~~~~~~~~~~~~~~G~i~~g~~~g--~~y~ld~~~G~-~ 133 (370)
T COG1520 64 PADGDGTVYVGT--RDG--NIFALNPD-TGLVKWSYPLL--GAVAQLSGPILGSDGKIYVGSWDG--KLYALDASTGT-L 133 (370)
T ss_pred cEeeCCeEEEec--CCC--cEEEEeCC-CCcEEecccCc--CcceeccCceEEeCCeEEEecccc--eEEEEECCCCc-E
Confidence 367899999972 123 68889998 554 976432 101111222333489988754432 23333 43432 2
Q ss_pred CcceeccccccccccccCCccceEEEeeCCcEEEE-ecCcEEEeeCCCC--eEEEECCC-CCCCCCcccCCCceeecccc
Q 048136 204 AYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIF-ANNRSILLDPRAN--YVLREYPP-LPGGARNYPSTSTSVLLPLK 279 (559)
Q Consensus 204 ~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~-Gg~~~e~yDp~t~--~W~~~~p~-mp~~~~~~p~~g~~v~lpl~ 279 (559)
.|....+. . ..+....+..++.+|+. ...++.++|..++ .|....+. ++. +.+ +..+ .
T Consensus 134 ~W~~~~~~-~--------~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~--~~~---~~~~-~--- 195 (370)
T COG1520 134 VWSRNVGG-S--------PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSL--SIY---GSPA-I--- 195 (370)
T ss_pred EEEEecCC-C--------eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccc--ccc---cCce-e---
Confidence 34333222 0 01122235568888887 3466778888764 57654432 221 111 1111 1
Q ss_pred cccccccccCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee-cCCCCcccc-cEEEeeCCeEEEEc
Q 048136 280 LYRDYYARVDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMPTPRVMS-DGVLLPTGDVLLIN 357 (559)
Q Consensus 280 ~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~-~av~LpdG~V~vvG 357 (559)
.++.+|+-.-. + . ....-+|+.+....|+.. ..+..+... .......+.|++-+
T Consensus 196 --------~~~~vy~~~~~----~-~-----------~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 251 (370)
T COG1520 196 --------ASGTVYVGSDG----Y-D-----------GILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG 251 (370)
T ss_pred --------ecceEEEecCC----C-c-----------ceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECC
Confidence 25666665321 0 0 123345555555788864 444443321 01234466777766
Q ss_pred CcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCC--CccceeeeEECCCCceEEeCCC
Q 048136 358 GAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDI--PRMYHSVANLLPDGRVFVGGSN 419 (559)
Q Consensus 358 G~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~--~R~yhs~a~llpdG~Vlv~GG~ 419 (559)
|...+.. .....++|-.+.+. .|+.-.++.+ -+.+ .+...-.||++|+.-..
T Consensus 252 ~~~~~~~--------~g~~~~l~~~~G~~-~W~~~~~~~~~~~~~~-~~~~~~~dG~v~~~~~~ 305 (370)
T COG1520 252 GVYAGSY--------GGKLLCLDADTGEL-IWSFPAGGSVQGSGLY-TTPVAGADGKVYIGFTD 305 (370)
T ss_pred cEEEEec--------CCeEEEEEcCCCce-EEEEecccEeccCCee-EEeecCCCccEEEEEec
Confidence 5311110 01356666654422 6876544221 2222 22333358888887543
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=48.70 E-value=3.9e+02 Score=29.06 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=60.1
Q ss_pred CeecCCCc-EEEEcCCCCCCCeEEEEeCCCCCCeecCCCccc--cccccceEEEccCCcEEEEcCCCCCceeEE-cCCCC
Q 048136 126 GGLDVNGN-LISTGGFLGGSRTTRYLWGCPTCDWTEYPTALK--DGRWYATQALLADGSFLIFGGRDSFSYEYI-PAERT 201 (559)
Q Consensus 126 ~~~l~dG~-i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~--~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~ 201 (559)
+.+.++|. .++++|.. +-.+.||-. +.+-+++.+ |. ..+.-..-.+-+|+.++++-|..+. .-+. -.++
T Consensus 263 a~f~p~G~~~i~~s~rr---ky~ysyDle-~ak~~k~~~-~~g~e~~~~e~FeVShd~~fia~~G~~G~-I~lLhakT~- 335 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRR---KYLYSYDLE-TAKVTKLKP-PYGVEEKSMERFEVSHDSNFIAIAGNNGH-IHLLHAKTK- 335 (514)
T ss_pred eeecCCCceEEEecccc---eEEEEeecc-ccccccccC-CCCcccchhheeEecCCCCeEEEcccCce-EEeehhhhh-
Confidence 35667998 88888863 567789988 777777643 22 1222222334468888888887652 1111 2222
Q ss_pred CCCcceeccccccccccccCCccceEEEeeCCcE-EEEec-CcEEEeeCCCCeEE
Q 048136 202 ENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNL-YIFAN-NRSILLDPRANYVL 254 (559)
Q Consensus 202 ~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~i-yv~Gg-~~~e~yDp~t~~W~ 254 (559)
.|...+.+.-. .--+.+- .||+. +++|+ ..+++||...+...
T Consensus 336 --eli~s~KieG~--------v~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 336 --ELITSFKIEGV--------VSDFTFS-SDSKELLASGGTGEVYVWNLRQNSCL 379 (514)
T ss_pred --hhhheeeeccE--------EeeEEEe-cCCcEEEEEcCCceEEEEecCCcceE
Confidence 23322222111 1112222 46654 44544 35778888887544
No 118
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.46 E-value=92 Score=31.77 Aligned_cols=89 Identities=20% Similarity=0.298 Sum_probs=50.8
Q ss_pred CCCcc-cccEEEeeCCeEEEEc-CcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceE
Q 048136 337 PTPRV-MSDGVLLPTGDVLLIN-GAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVF 414 (559)
Q Consensus 337 ~~~R~-~~~av~LpdG~V~vvG-G~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vl 414 (559)
...|. +.-.+--+||+++-.- +..+.. . --+-+||-. . .++.++.-+.--+..--.+|++|||.+
T Consensus 110 ~~~RHfyGHGvfs~dG~~LYATEndfd~~-------r--GViGvYd~r-~---~fqrvgE~~t~GiGpHev~lm~DGrtl 176 (366)
T COG3490 110 QEGRHFYGHGVFSPDGRLLYATENDFDPN-------R--GVIGVYDAR-E---GFQRVGEFSTHGIGPHEVTLMADGRTL 176 (366)
T ss_pred ccCceeecccccCCCCcEEEeecCCCCCC-------C--ceEEEEecc-c---ccceecccccCCcCcceeEEecCCcEE
Confidence 33443 3336888999876532 111111 1 146899987 5 677776654433333367889999987
Q ss_pred EeCCC---CCCCCcccCCCCCcceeeEEcCCC
Q 048136 415 VGGSN---DNDGYQEWAKFPTELRLEKFSPPY 443 (559)
Q Consensus 415 v~GG~---~~~~~~~~~~~~~~~~~E~y~Ppy 443 (559)
|+-++ .+..+ + -+++++|...|.+
T Consensus 177 vvanGGIethpdf---g--R~~lNldsMePSl 203 (366)
T COG3490 177 VVANGGIETHPDF---G--RTELNLDSMEPSL 203 (366)
T ss_pred EEeCCceeccccc---C--ccccchhhcCccE
Confidence 55332 22211 1 1467788888887
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=47.05 E-value=3.5e+02 Score=29.42 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=68.6
Q ss_pred eeeEEEeCCCCCEEeCccCCCc---ccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEE
Q 048136 100 CHSVFYNVNTLQVTPLKVITDT---WCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQAL 176 (559)
Q Consensus 100 ~~~~~yDp~t~~w~~~~~~~~~---~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~ 176 (559)
.....||..+.+.+++..+... .-..--+-.++..+++-|.. -.+.+.... +..|... |...---...+.
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---G~I~lLhak-T~eli~s---~KieG~v~~~~f 352 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---GHIHLLHAK-TKELITS---FKIEGVVSDFTF 352 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---ceEEeehhh-hhhhhhe---eeeccEEeeEEE
Confidence 4467899999999888755211 11111233577777777763 256667766 7777643 332211122333
Q ss_pred ccCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecCc--EEEeeCCCC
Q 048136 177 LADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNR--SILLDPRAN 251 (559)
Q Consensus 177 L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~--~e~yDp~t~ 251 (559)
-.||+.+++.|.++ .+.+| -..+. . ++.-.|. ..-.....+..++|..|++|..+ +-+||-.+-
T Consensus 353 sSdsk~l~~~~~~G-eV~v~nl~~~~---~------~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 353 SSDSKELLASGGTG-EVYVWNLRQNS---C------LHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred ecCCcEEEEEcCCc-eEEEEecCCcc---e------EEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 35776655555443 22223 22211 0 1110110 00011223445799999888764 678986653
No 120
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=45.91 E-value=93 Score=27.88 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCCccCCcceEEEEE
Q 048136 522 HEVVVAMPPSGNIAPPGYYMLSVV 545 (559)
Q Consensus 522 ~~~~v~~P~~~~~~ppG~ymlf~~ 545 (559)
....+++|.+ |+||-|-+++.
T Consensus 94 ~h~~i~IPa~---a~~G~YH~~i~ 114 (132)
T PF15418_consen 94 FHEHIDIPAD---APAGDYHFMIT 114 (132)
T ss_pred EEEeeeCCCC---CCCcceEEEEE
Confidence 3446789998 89999977766
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=45.32 E-value=1.7e+02 Score=32.14 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=75.0
Q ss_pred CcEEEEecCcEEEeeCCCCeEEEECCCCCCC-CCcccCCCceeecccccccccccccCcEEEEEcCCCCccccccccccc
Q 048136 233 GNLYIFANNRSILLDPRANYVLREYPPLPGG-ARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEKR 311 (559)
Q Consensus 233 G~iyv~Gg~~~e~yDp~t~~W~~~~p~mp~~-~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 311 (559)
-++|.-|-..+-+||...-.=...+..|+-. +.+|-| ++-++| +|+-+++||..
T Consensus 432 rhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiR--SckL~p-----------dgrtLivGGea------------ 486 (705)
T KOG0639|consen 432 RHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIR--SCKLLP-----------DGRTLIVGGEA------------ 486 (705)
T ss_pred ceeEecCCCeEEEeeccCCCCCCccccccccCccccee--eeEecC-----------CCceEEecccc------------
Confidence 3444433345677886542100011112211 345654 455554 89999999963
Q ss_pred cccccCceEEEEecCCCCceeee-cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEE
Q 048136 312 LVPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFT 390 (559)
Q Consensus 312 ~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt 390 (559)
.++.++|+..++.+-..+ .-..+-+++ -.+-||-||...-=.+ | .+.+||-... +--
T Consensus 487 -----stlsiWDLAapTprikaeltssapaCyA-La~spDakvcFsccsd-G------------nI~vwDLhnq---~~V 544 (705)
T KOG0639|consen 487 -----STLSIWDLAAPTPRIKAELTSSAPACYA-LAISPDAKVCFSCCSD-G------------NIAVWDLHNQ---TLV 544 (705)
T ss_pred -----ceeeeeeccCCCcchhhhcCCcchhhhh-hhcCCccceeeeeccC-C------------cEEEEEcccc---eee
Confidence 355678887755544443 333344554 3566788887643211 1 4688887765 221
Q ss_pred ecCCCCCCccceeeeEECCCCceEEeCCCCC
Q 048136 391 ELAPSDIPRMYHSVANLLPDGRVFVGGSNDN 421 (559)
Q Consensus 391 ~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~ 421 (559)
...+----..++-.+-+||.=+=.||-++
T Consensus 545 --rqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 545 --RQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred --ecccCCCCCceeEEecCCCceeecCCCcc
Confidence 11111112235666778998888888554
No 122
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=44.88 E-value=20 Score=27.00 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=13.4
Q ss_pred eeEECCCCceEEeCCCC
Q 048136 404 VANLLPDGRVFVGGSND 420 (559)
Q Consensus 404 ~a~llpdG~Vlv~GG~~ 420 (559)
...++|||||+++|...
T Consensus 5 ~~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 5 AVAVQSDGKILVAGYVD 21 (55)
T ss_pred EEEECCCCcEEEEEEee
Confidence 35677999999999653
No 123
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.81 E-value=5.6e+02 Score=29.74 Aligned_cols=171 Identities=13% Similarity=0.137 Sum_probs=87.1
Q ss_pred eEEEeCCCCCE-EeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCC
Q 048136 102 SVFYNVNTLQV-TPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADG 180 (559)
Q Consensus 102 ~~~yDp~t~~w-~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG 180 (559)
.-+|+..|.+. +.+... .--+..++++++.+++|+.. -...+||-. +..-.+.-..=...-| +....+||
T Consensus 396 ikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~---Gel~vfdla-S~~l~Eti~AHdgaIW--si~~~pD~ 466 (888)
T KOG0306|consen 396 IKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKN---GELQVFDLA-SASLVETIRAHDGAIW--SISLSPDN 466 (888)
T ss_pred EEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccC---CceEEEEee-hhhhhhhhhcccccee--eeeecCCC
Confidence 45677765443 333322 11233466778888888763 367889977 4433322110112345 56678899
Q ss_pred cEEEEcCCCCCceeEEcC---CCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEe--cCcEEEeeCCCCeEEE
Q 048136 181 SFLIFGGRDSFSYEYIPA---ERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFA--NNRSILLDPRANYVLR 255 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~yP~---~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~G--g~~~e~yDp~t~~W~~ 255 (559)
+=+|.||.+. ++.+|.. .........+..+.+.+.=-.+ ..--++.+.|||++.++| ++.+-+|-..+=+..-
T Consensus 467 ~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~-ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfl 544 (888)
T KOG0306|consen 467 KGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE-DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFL 544 (888)
T ss_pred CceEEecCCc-EEEEEeEEEEeccCcccceeeeeccceEEecc-ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeee
Confidence 9999999874 3433310 0000011122222211100000 011234566899999998 5777777665544331
Q ss_pred ECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCC
Q 048136 256 EYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVP 300 (559)
Q Consensus 256 ~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~ 300 (559)
.+ |.+.-....+.+ .++.++++.|+.+.
T Consensus 545 sL---------YGHkLPV~smDI--------S~DSklivTgSADK 572 (888)
T KOG0306|consen 545 SL---------YGHKLPVLSMDI--------SPDSKLIVTGSADK 572 (888)
T ss_pred ee---------cccccceeEEec--------cCCcCeEEeccCCC
Confidence 11 322111222222 25889999998874
No 124
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.58 E-value=2.6e+02 Score=32.06 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=70.8
Q ss_pred cCCccceeeEEEeCCCCCEEeC-c-cCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccc-cccc
Q 048136 94 TNIDCWCHSVFYNVNTLQVTPL-K-VITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALK-DGRW 170 (559)
Q Consensus 94 ~~~~~~~~~~~yDp~t~~w~~~-~-~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~-~~R~ 170 (559)
+.+|++| .+|.-..+.=..+ + ...+..|. .+-+|...+.+|+. | +.|+.||-. +..=..+ +. +.+-
T Consensus 511 as~D~tA--rLWs~d~~~PlRifaghlsDV~cv--~FHPNs~Y~aTGSs-D--~tVRlWDv~-~G~~VRi---F~GH~~~ 579 (707)
T KOG0263|consen 511 ASHDQTA--RLWSTDHNKPLRIFAGHLSDVDCV--SFHPNSNYVATGSS-D--RTVRLWDVS-TGNSVRI---FTGHKGP 579 (707)
T ss_pred cCCCcee--eeeecccCCchhhhcccccccceE--EECCcccccccCCC-C--ceEEEEEcC-CCcEEEE---ecCCCCc
Confidence 3567764 5665443221111 1 12344442 35577777777754 2 789999988 5443322 11 2222
Q ss_pred cceEEEccCCcEEEEcCCCCCceeEE-cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec--CcEEEee
Q 048136 171 YATQALLADGSFLIFGGRDSFSYEYI-PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN--NRSILLD 247 (559)
Q Consensus 171 y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg--~~~e~yD 247 (559)
-.+++.-++|+-++.|+.++ .+-+| -..+ ..+..+... .+ ..|. +.-..||.|+++|| +++.+||
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~-~I~iWDl~~~-----~~v~~l~~H-t~----ti~S-lsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDG-LIKIWDLANG-----SLVKQLKGH-TG----TIYS-LSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred eEEEEEcCCCceEeecccCC-cEEEEEcCCC-----cchhhhhcc-cC----ceeE-EEEecCCCEEEecCCCCeEEEEE
Confidence 34556667898888888764 35566 2221 222333221 11 1221 22245999999987 5678887
Q ss_pred CC
Q 048136 248 PR 249 (559)
Q Consensus 248 p~ 249 (559)
-.
T Consensus 648 ~~ 649 (707)
T KOG0263|consen 648 LT 649 (707)
T ss_pred ch
Confidence 64
No 125
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.33 E-value=1.3e+02 Score=29.91 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=54.5
Q ss_pred eeEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCC
Q 048136 101 HSVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADG 180 (559)
Q Consensus 101 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG 180 (559)
.+..||.+|++.-.----|...-....+--+-.|++.|++. .++++||-. +++..++.- +...+-.-....+ .+
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD---~s~r~wDCR-S~s~ePiQi-ldea~D~V~Si~v-~~ 155 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD---SSVRLWDCR-SRSFEPIQI-LDEAKDGVSSIDV-AE 155 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEecccc---ceeEEEEcc-cCCCCccch-hhhhcCceeEEEe-cc
Confidence 37899999987543211111111111122245677888873 689999999 888887753 7777776666667 34
Q ss_pred cEEEEcCCCCCceeEE
Q 048136 181 SFLIFGGRDSFSYEYI 196 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~y 196 (559)
.- |++|+...++..|
T Consensus 156 he-IvaGS~DGtvRty 170 (307)
T KOG0316|consen 156 HE-IVAGSVDGTVRTY 170 (307)
T ss_pred cE-EEeeccCCcEEEE
Confidence 44 4455544566777
No 126
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=44.00 E-value=65 Score=32.72 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=54.1
Q ss_pred ecCCCCCcceeEEEee-cCCC--eEEEEecccccccCCCCCCCCCC-CCccccccccccCCccceeeEEEeCCCCCEEe-
Q 048136 40 LLPNNPGISAMHSVLL-PNVD--EMVIFDATVWQISRLPLPDYKRP-CPMHQNKATNVTNIDCWCHSVFYNVNTLQVTP- 114 (559)
Q Consensus 40 ~~~~~~~~~~~h~~~~-~~~g--kv~~~gg~~~~~s~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~- 114 (559)
.+...+..|.-|+.-+ ...| -+++|||...- |- +. ..-+++. -.||..++.+.|++-+-.+.
T Consensus 80 LvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~------P~--~qRTTenWNs-----VvDC~P~VfLiDleFGC~tah 146 (337)
T PF03089_consen 80 LVGDVPEARYGHTINVVHSRGKTACVLFGGRSYM------PP--GQRTTENWNS-----VVDCPPQVFLIDLEFGCCTAH 146 (337)
T ss_pred ecCCCCcccccceEEEEEECCcEEEEEECCcccC------Cc--cccchhhcce-----eccCCCeEEEEeccccccccc
Confidence 3445566677676533 1345 35788887532 21 21 0000211 24899999999998876653
Q ss_pred -CccCCCcccccCeecCCCcEEEEcCCC
Q 048136 115 -LKVITDTWCSSGGLDVNGNLISTGGFL 141 (559)
Q Consensus 115 -~~~~~~~~c~~~~~l~dG~i~v~GG~~ 141 (559)
++.+.+-+.-..++.-+..||++||+.
T Consensus 147 ~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 147 TLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred cchhhcCCeEEEEEEecCceEEEEccEE
Confidence 455566655555566689999999974
No 127
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=42.41 E-value=4e+02 Score=27.89 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=57.7
Q ss_pred ccceeeEEEeCCCCCEEeCcc---CC-----CcccccCeecCCCcEEEEcCCCCCCCeEEEEe--CCCCCC-----eecC
Q 048136 97 DCWCHSVFYNVNTLQVTPLKV---IT-----DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLW--GCPTCD-----WTEY 161 (559)
Q Consensus 97 ~~~~~~~~yDp~t~~w~~~~~---~~-----~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~yd--p~~t~~-----W~~~ 161 (559)
+.+-.+..||+..++++.+.. ++ +.+|++--...||+.+-+-= .+.+++.+|. |. +.+ |+..
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN--Rg~dsI~~f~V~~~-~g~L~~~~~~~t 288 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN--RGHDSIAVFSVDPD-GGKLELVGITPT 288 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec--CCCCeEEEEEEcCC-CCEEEEEEEecc
Confidence 334456778888888887753 22 34566666778998665532 2445666654 44 343 2222
Q ss_pred CCccccccccceEEEccCCcEEEEcCCCCCceeEE
Q 048136 162 PTALKDGRWYATQALLADGSFLIFGGRDSFSYEYI 196 (559)
Q Consensus 162 ~~~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y 196 (559)
.-+.||.. ..-++|+.+++-+.++.++.+|
T Consensus 289 --eg~~PR~F---~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 289 --EGQFPRDF---NINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred --CCcCCccc---eeCCCCCEEEEEccCCCcEEEE
Confidence 12456753 2345799999999888888888
No 128
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=40.75 E-value=24 Score=22.71 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=13.6
Q ss_pred cceeeeEECCCCceEEeCCCCC
Q 048136 400 MYHSVANLLPDGRVFVGGSNDN 421 (559)
Q Consensus 400 ~yhs~a~llpdG~Vlv~GG~~~ 421 (559)
.+|++ +|.-||+||..|.+..
T Consensus 8 ~~ht~-al~~~g~v~~wG~n~~ 28 (30)
T PF13540_consen 8 GYHTC-ALTSDGEVYCWGDNNY 28 (30)
T ss_dssp SSEEE-EEE-TTEEEEEE--TT
T ss_pred CCEEE-EEEcCCCEEEEcCCcC
Confidence 46854 5568999999998754
No 129
>PRK03629 tolB translocation protein TolB; Provisional
Probab=40.23 E-value=5e+02 Score=27.88 Aligned_cols=140 Identities=8% Similarity=-0.008 Sum_probs=73.0
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
..++|..+++-+.+...... .......+||+.+++-...++...++++|.. +.+...+.. -.. ......-.+||+
T Consensus 225 i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~lt~-~~~--~~~~~~wSPDG~ 299 (429)
T PRK03629 225 LVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQVTD-GRS--NNTEPTWFPDSQ 299 (429)
T ss_pred EEEEECCCCCeEEccCCCCC-cCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEccC-CCC--CcCceEECCCCC
Confidence 56778888877766543222 2234667899866654332444578999998 776665542 111 112334456887
Q ss_pred EEEEcCCCCCceeEE--cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec-----CcEEEeeCCCCeEE
Q 048136 182 FLIFGGRDSFSYEYI--PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN-----NRSILLDPRANYVL 254 (559)
Q Consensus 182 VyvvGG~~~~s~E~y--P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg-----~~~e~yDp~t~~W~ 254 (559)
.++.........++| ...+. -....... . .........+||+.+++.. ..+.++|..++.+.
T Consensus 300 ~I~f~s~~~g~~~Iy~~d~~~g---~~~~lt~~-~-------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 300 NLAYTSDQAGRPQVYKVNINGG---APQRITWE-G-------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred EEEEEeCCCCCceEEEEECCCC---CeEEeecC-C-------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 555443222233555 22210 11111100 0 0111233567888766643 24667898888766
Q ss_pred EECC
Q 048136 255 REYP 258 (559)
Q Consensus 255 ~~~p 258 (559)
.+.
T Consensus 369 -~Lt 371 (429)
T PRK03629 369 -VLT 371 (429)
T ss_pred -EeC
Confidence 353
No 130
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=39.64 E-value=4.7e+02 Score=27.43 Aligned_cols=138 Identities=12% Similarity=0.014 Sum_probs=68.0
Q ss_pred eeEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCC
Q 048136 101 HSVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADG 180 (559)
Q Consensus 101 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG 180 (559)
...+||..+++.+.+...... .......+||+-+++....++...++++|.. +.....+.. .. .........+||
T Consensus 215 ~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~l~~-~~--~~~~~~~~s~dg 289 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTRLTN-GP--GIDTEPSWSPDG 289 (417)
T ss_pred EEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEECCC-CC--CCCCCEEECCCC
Confidence 367789988877665543221 1234567898744433222344678899987 666655532 11 111122334577
Q ss_pred cEEEEcCCCCCceeEE--cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC-----cEEEeeCCCCeE
Q 048136 181 SFLIFGGRDSFSYEYI--PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN-----RSILLDPRANYV 253 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~y--P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~-----~~e~yDp~t~~W 253 (559)
+-+++.........+| .... ..+..+.. .. .........+||+.+++... .+.++|..++.+
T Consensus 290 ~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~~---~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 290 KSIAFTSDRGGSPQIYMMDADG--GEVRRLTF---RG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CEEEEEECCCCCceEEEEECCC--CCEEEeec---CC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 6544433222222344 3221 11211110 00 01112234578887776542 467888887655
Q ss_pred E
Q 048136 254 L 254 (559)
Q Consensus 254 ~ 254 (559)
.
T Consensus 359 ~ 359 (417)
T TIGR02800 359 R 359 (417)
T ss_pred E
Confidence 4
No 131
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=39.03 E-value=2e+02 Score=27.19 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=44.5
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
+.+||.+.+....+.. ........-++|+.+++||..+..-.+++||.. + +..+.. ..+.. -..++=-+||+
T Consensus 85 v~lyd~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~-~--~~~i~~-~~~~~-~t~~~WsPdGr 156 (194)
T PF08662_consen 85 VTLYDVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR-K--KKKIST-FEHSD-ATDVEWSPDGR 156 (194)
T ss_pred cEEEcCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECC-C--CEEeec-cccCc-EEEEEEcCCCC
Confidence 6788886444444332 112223455899999999974333478999976 3 333332 22222 11223346888
Q ss_pred EEEEcC
Q 048136 182 FLIFGG 187 (559)
Q Consensus 182 VyvvGG 187 (559)
.++...
T Consensus 157 ~~~ta~ 162 (194)
T PF08662_consen 157 YLATAT 162 (194)
T ss_pred EEEEEE
Confidence 888654
No 132
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=38.92 E-value=55 Score=32.44 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=47.6
Q ss_pred CCCCceeee---cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCc---
Q 048136 326 SPDPVWTTE---KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPR--- 399 (559)
Q Consensus 326 ~~~~~W~~~---~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R--- 399 (559)
+...+|+.. .++.+......+.+.+|+++++.....+ +.+ +.+.+ ..+.|++|+....+....
T Consensus 191 D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------r~~-l~l~~---S~D~g~tW~~~~~i~~~~~~~ 259 (275)
T PF13088_consen 191 DGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG-------RSN-LSLYV---SEDGGKTWSRPKTIDDGPNGD 259 (275)
T ss_dssp STTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSST-------SEE-EEEEE---ECTTCEEEEEEEEEEEEE-CC
T ss_pred CCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCC-------CCc-eEEEE---EeCCCCcCCccEEEeCCCCCc
Confidence 345789962 6787777776677889999998873211 111 12222 233456998653333222
Q ss_pred cceeeeEECCCCceEE
Q 048136 400 MYHSVANLLPDGRVFV 415 (559)
Q Consensus 400 ~yhs~a~llpdG~Vlv 415 (559)
...+..+.++||+|+|
T Consensus 260 ~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 260 SGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEEEETTEEEE
T ss_pred EECCeeEEeCCCcCCC
Confidence 4445777889999986
No 133
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.48 E-value=5.8e+02 Score=28.16 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=49.0
Q ss_pred eEEEeCCCCCEEeCccCC-CcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCcccc---ccccceEEEc
Q 048136 102 SVFYNVNTLQVTPLKVIT-DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKD---GRWYATQALL 177 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~-~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~---~R~y~s~~~L 177 (559)
+.+|+-.+.+.+.+.... +.-|+ -..-.+|..+++|=. ...+++||.. +++=.+ . |.. .|+ ++..-
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtS-v~ws~~G~~LavG~~---~g~v~iwD~~-~~k~~~--~-~~~~h~~rv--g~laW 268 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTS-VKWSPDGSHLAVGTS---DGTVQIWDVK-EQKKTR--T-LRGSHASRV--GSLAW 268 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEE-EEECCCCCEEEEeec---CCeEEEEehh-hccccc--c-ccCCcCcee--EEEec
Confidence 677888888877776653 22221 233458999999854 2479999987 444222 2 433 343 34344
Q ss_pred cCCcEEEEcCCCC
Q 048136 178 ADGSFLIFGGRDS 190 (559)
Q Consensus 178 ~dG~VyvvGG~~~ 190 (559)
++.++..|..+.
T Consensus 269 -~~~~lssGsr~~ 280 (484)
T KOG0305|consen 269 -NSSVLSSGSRDG 280 (484)
T ss_pred -cCceEEEecCCC
Confidence 688888888765
No 134
>PRK02888 nitrous-oxide reductase; Validated
Probab=37.99 E-value=6.6e+02 Score=28.68 Aligned_cols=50 Identities=14% Similarity=0.019 Sum_probs=36.2
Q ss_pred CeEEEEeCCCC---CCeecCCCccccccccceEEEccCCcEEEEcCCCCCceeEE
Q 048136 145 RTTRYLWGCPT---CDWTEYPTALKDGRWYATQALLADGSFLIFGGRDSFSYEYI 196 (559)
Q Consensus 145 ~~v~~ydp~~t---~~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y 196 (559)
+.|-++|.. + ..+..+. .++.++.-|++.+-+||+-+++.|..++++.++
T Consensus 296 n~V~VID~~-t~~~~~~~v~~-yIPVGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 296 SKVPVVDGR-KAANAGSALTR-YVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred CEEEEEECC-ccccCCcceEE-EEECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 568899987 5 1233333 377888889999999999777777666667666
No 135
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=37.50 E-value=6.8e+02 Score=28.68 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=17.4
Q ss_pred cccccceEEEccCCcEEEEcCCCCCceeEE
Q 048136 167 DGRWYATQALLADGSFLIFGGRDSFSYEYI 196 (559)
Q Consensus 167 ~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y 196 (559)
..-| +++.|+++ .||.|+.+ ++..+|
T Consensus 141 asVW--Av~~l~e~-~~vTgsaD-KtIklW 166 (745)
T KOG0301|consen 141 ASVW--AVASLPEN-TYVTGSAD-KTIKLW 166 (745)
T ss_pred hhee--eeeecCCC-cEEeccCc-ceeeec
Confidence 3456 67789877 88888876 344444
No 136
>PRK05137 tolB translocation protein TolB; Provisional
Probab=37.33 E-value=5.5e+02 Score=27.51 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=46.7
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
...+|..+++.+.+..... ........+||+-+++.....+...++++|.. +.+...+.. ....+.....-+||+
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~~~lt~---~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNPRRISF---GGGRYSTPVWSPRGD 346 (435)
T ss_pred EEEEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CCCeEEeec---CCCcccCeEECCCCC
Confidence 4556888888877654221 12234567899866665443455678889977 555554431 122233344456887
Q ss_pred EEEEcC
Q 048136 182 FLIFGG 187 (559)
Q Consensus 182 VyvvGG 187 (559)
.+++..
T Consensus 347 ~ia~~~ 352 (435)
T PRK05137 347 LIAFTK 352 (435)
T ss_pred EEEEEE
Confidence 766543
No 137
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.11 E-value=3.6e+02 Score=27.86 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=52.1
Q ss_pred eEEEeCCCCCEEeC-ccC-CCcccccCeecCCCcEEEE-cCCCC-CCCeEEEEeCCCCCCeecCCCccc-cccccceEEE
Q 048136 102 SVFYNVNTLQVTPL-KVI-TDTWCSSGGLDVNGNLIST-GGFLG-GSRTTRYLWGCPTCDWTEYPTALK-DGRWYATQAL 176 (559)
Q Consensus 102 ~~~yDp~t~~w~~~-~~~-~~~~c~~~~~l~dG~i~v~-GG~~~-g~~~v~~ydp~~t~~W~~~~~~m~-~~R~y~s~~~ 176 (559)
..++|+.+++-... ... ..+|...+++.+||+++.+ =...+ +.-.+-+||.. +....+.. .. .+-.-|=...
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E-~~s~GIGPHel~l 106 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGE-FPSHGIGPHELLL 106 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeE-ecCCCcChhhEEE
Confidence 68899999876543 222 3468888899999986554 33222 23467889986 34444432 22 2334455667
Q ss_pred ccCCcEEEE--cCC
Q 048136 177 LADGSFLIF--GGR 188 (559)
Q Consensus 177 L~dG~Vyvv--GG~ 188 (559)
++||+-+|| ||.
T Consensus 107 ~pDG~tLvVANGGI 120 (305)
T PF07433_consen 107 MPDGETLVVANGGI 120 (305)
T ss_pred cCCCCEEEEEcCCC
Confidence 889966655 564
No 138
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=37.11 E-value=2e+02 Score=27.28 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=43.1
Q ss_pred CCccCCCCeEEEEEEeccccccceEEEEEEcCCcccccccCCcceEEeeeeeeecccCCCcEEEEEEcCCCCCccCCcce
Q 048136 461 EKAAPYGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVVVAMPPSGNIAPPGYY 540 (559)
Q Consensus 461 p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~v~l~~~~~~~~~~~g~~~~~v~~P~~~~~~ppG~y 540 (559)
|..+..|+.|++++-..+ .......|.+...+........ ....+. .+ .+.+++++|. ||.|
T Consensus 144 P~~l~~g~~~~~~vl~~G-kPl~~a~V~~~~~~~~~~~~~~-----~~~~~T--D~----~G~~~~~~~~------~G~w 205 (215)
T PF10670_consen 144 PYKLKAGDPLPFQVLFDG-KPLAGAEVEAFSPGGWYDVEHE-----AKTLKT--DA----NGRATFTLPR------PGLW 205 (215)
T ss_pred cccccCCCEEEEEEEECC-eEcccEEEEEEECCCccccccc-----eEEEEE--CC----CCEEEEecCC------CEEE
Confidence 666788998888877433 2234578888888766543333 222222 11 3467776665 8999
Q ss_pred EEEEEc
Q 048136 541 MLSVVL 546 (559)
Q Consensus 541 mlf~~~ 546 (559)
||-+..
T Consensus 206 li~a~~ 211 (215)
T PF10670_consen 206 LIRASH 211 (215)
T ss_pred EEEEEE
Confidence 998875
No 139
>PRK04792 tolB translocation protein TolB; Provisional
Probab=36.50 E-value=5.8e+02 Score=27.59 Aligned_cols=136 Identities=14% Similarity=0.018 Sum_probs=69.0
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
..++|+.+++-+.+...... -......+||+-+++-...++...++++|.. +.+.+.+... .-.....+.-+||+
T Consensus 244 L~~~dl~tg~~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~lt~~---~~~~~~p~wSpDG~ 318 (448)
T PRK04792 244 IFVQDIYTQVREKVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTRITRH---RAIDTEPSWHPDGK 318 (448)
T ss_pred EEEEECCCCCeEEecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEECccC---CCCccceEECCCCC
Confidence 56778888877666533211 1134567899855543332455678899998 7777665431 11112233346887
Q ss_pred EEEEcCCCCCceeEE--c-CCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEec-----CcEEEeeCCCCeE
Q 048136 182 FLIFGGRDSFSYEYI--P-AERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFAN-----NRSILLDPRANYV 253 (559)
Q Consensus 182 VyvvGG~~~~s~E~y--P-~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg-----~~~e~yDp~t~~W 253 (559)
-+++........++| . ..+ .+..+. . .. .........+||+.+++.. ....++|..++..
T Consensus 319 ~I~f~s~~~g~~~Iy~~dl~~g---~~~~Lt-~-~g-------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 319 SLIFTSERGGKPQIYRVNLASG---KVSRLT-F-EG-------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EEEEEECCCCCceEEEEECCCC---CEEEEe-c-CC-------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 554433222223455 2 222 122111 1 10 0111123467887666543 2456678877765
Q ss_pred E
Q 048136 254 L 254 (559)
Q Consensus 254 ~ 254 (559)
.
T Consensus 387 ~ 387 (448)
T PRK04792 387 Q 387 (448)
T ss_pred E
Confidence 4
No 140
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=36.40 E-value=2.3e+02 Score=22.92 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=47.6
Q ss_pred CCcccccCCCCccCCCCeEEEEEEeccccccceEEEEEEcCCcccccccCCcceEEeeeeeeecccCCCcEEEEEEcCCC
Q 048136 452 RPMILVDETEKAAPYGKWVGIKVKSAEMLNEFDLMVTMIAPPFVTHSISMNQRLIELAIIEIKNDVYPGVHEVVVAMPPS 531 (559)
Q Consensus 452 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~v~l~~~~~~~~~~~g~~~~~v~~P~~ 531 (559)
-|.|.+.. |..-..|++++|+=+.-+ ....+|. +. + ...++...+ ...|++++|..
T Consensus 2 ~P~I~~i~-P~~g~~G~~VtI~G~gFg---~~~~~V~-~g----------~---~~a~v~s~s------dt~I~~~vP~~ 57 (81)
T cd02849 2 TPLIGHVG-PMMGKAGNTVTISGEGFG---SAPGTVY-FG----------T---TAATVISWS------DTRIVVTVPNV 57 (81)
T ss_pred CCEEeeEc-CCCCCCCCEEEEEEECCC---CCCcEEE-EC----------C---EEeEEEEEC------CCEEEEEeCCC
Confidence 47888886 887788998887644211 0112221 11 1 333444332 25889999974
Q ss_pred CCccCCcceEEEEEc-CCCCCccEE
Q 048136 532 GNIAPPGYYMLSVVL-KGIPSPSMW 555 (559)
Q Consensus 532 ~~~~ppG~ymlf~~~-~gvPS~~~~ 555 (559)
++|.|-++|.. +|.=|.+.-
T Consensus 58 ----~aG~~~V~V~~~~G~~Sn~~~ 78 (81)
T cd02849 58 ----PAGNYDVTVKTADGATSNGYN 78 (81)
T ss_pred ----CCceEEEEEEeCCCcccCcEe
Confidence 78999999997 687776543
No 141
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=36.14 E-value=2.7e+02 Score=24.28 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=12.8
Q ss_pred cEEEEEEcCCCCCccCCcceEEEEE
Q 048136 521 VHEVVVAMPPSGNIAPPGYYMLSVV 545 (559)
Q Consensus 521 ~~~~~v~~P~~~~~~ppG~ymlf~~ 545 (559)
.-+|.|+.|+| ||=|.|-|-|-
T Consensus 94 ~~tv~V~spa~---A~VG~y~l~v~ 115 (118)
T PF00868_consen 94 SVTVSVTSPAN---APVGRYKLSVE 115 (118)
T ss_dssp EEEEEEE--TT---S--EEEEEEEE
T ss_pred EEEEEEECCCC---CceEEEEEEEE
Confidence 35667777875 45599998764
No 142
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=34.39 E-value=4.2e+02 Score=28.69 Aligned_cols=140 Identities=13% Similarity=0.083 Sum_probs=71.0
Q ss_pred eEEEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCCCEEeCccCCCccc-ccCee
Q 048136 50 MHSVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTLQVTPLKVITDTWC-SSGGL 128 (559)
Q Consensus 50 ~h~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~~~~~~~~~c-~~~~~ 128 (559)
+..++- .+||+++.||.+ .+..+||+.|.+-... ...++- -.+.+
T Consensus 206 l~~avS-~Dgkylatgg~d-------------------------------~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 206 LTLAVS-SDGKYLATGGRD-------------------------------RHVQIWDCDTLEHVKV--FKGHRGAVSSLA 251 (479)
T ss_pred EEEEEc-CCCcEEEecCCC-------------------------------ceEEEecCcccchhhc--ccccccceeeee
Confidence 345666 799999999864 1257788776554332 111111 01222
Q ss_pred cCCC--cEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccc-cccccceEEEccCCcEEEEcCCCCCceeEE--cCCCCCC
Q 048136 129 DVNG--NLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALK-DGRWYATQALLADGSFLIFGGRDSFSYEYI--PAERTEN 203 (559)
Q Consensus 129 l~dG--~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~-~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y--P~~~~~~ 203 (559)
+-.| .+|..+ . .+++.+|+-. .....+. |- ++-.-.+.-+|.-+|+..+||++. ++.+| |...+
T Consensus 252 fr~gt~~lys~s-~---Drsvkvw~~~-~~s~vet---lyGHqd~v~~IdaL~reR~vtVGgrDr-T~rlwKi~eesq-- 320 (479)
T KOG0299|consen 252 FRKGTSELYSAS-A---DRSVKVWSID-QLSYVET---LYGHQDGVLGIDALSRERCVTVGGRDR-TVRLWKIPEESQ-- 320 (479)
T ss_pred eecCccceeeee-c---CCceEEEehh-HhHHHHH---HhCCccceeeechhcccceEEeccccc-eeEEEeccccce--
Confidence 2232 344443 2 2566666654 3222221 21 111223344566789999999974 56666 44211
Q ss_pred CcceeccccccccccccCCccceEEEeeCCcEEEEecCcEEEe
Q 048136 204 AYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRSILL 246 (559)
Q Consensus 204 ~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~y 246 (559)
.+..-. ...+-++.+.|..=|+.|.....++
T Consensus 321 ---lifrg~---------~~sidcv~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 321 ---LIFRGG---------EGSIDCVAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred ---eeeeCC---------CCCeeeEEEecccceeeccCCceEE
Confidence 011000 1133355667888888887654443
No 143
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=33.95 E-value=5.3e+02 Score=26.32 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=42.6
Q ss_pred ccEEEeCCCCCCCeEEecCCCCCC-ccceeeeEECCCCceEEeCCCCCCCCccc-CCCCCcceeeEEcCCC-C-CCCcCC
Q 048136 375 KPLLYKPSKPPGSRFTELAPSDIP-RMYHSVANLLPDGRVFVGGSNDNDGYQEW-AKFPTELRLEKFSPPY-L-APELAD 450 (559)
Q Consensus 375 ~~e~YDP~t~~g~~Wt~~~~~~~~-R~yhs~a~llpdG~Vlv~GG~~~~~~~~~-~~~~~~~~~E~y~Ppy-l-~~~~~~ 450 (559)
++.+||-.+- +- ..+-+. -.|-.+..+-|||.+.+.||..+..+-.+ ++--..++.|.+++-. | |.+
T Consensus 173 tvKvWnl~~~---~l---~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp--- 243 (315)
T KOG0279|consen 173 TVKVWNLRNC---QL---RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP--- 243 (315)
T ss_pred eEEEEccCCc---ch---hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC---
Confidence 6889998776 32 233222 33556788999999999999876532111 1100123444444443 1 323
Q ss_pred CCCccccc
Q 048136 451 RRPMILVD 458 (559)
Q Consensus 451 ~RP~i~~~ 458 (559)
.|+.+-.+
T Consensus 244 nrywL~~a 251 (315)
T KOG0279|consen 244 NRYWLCAA 251 (315)
T ss_pred CceeEeec
Confidence 57777655
No 144
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=33.83 E-value=3.6e+02 Score=27.96 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=48.9
Q ss_pred eEEEeCCCCCEEeCcc---CC-----CcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCC-CCCeecCCCcccc-cccc
Q 048136 102 SVFYNVNTLQVTPLKV---IT-----DTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCP-TCDWTEYPTALKD-GRWY 171 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~---~~-----~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~-t~~W~~~~~~m~~-~R~y 171 (559)
+..|+..+++++.+.. .. ...++.-.+.+||+.+.+.- .+.+++.+|+-.. +.+.+.+.. ... +++-
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn--r~~~sI~vf~~d~~~g~l~~~~~-~~~~G~~P 294 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN--RGSNSISVFDLDPATGTLTLVQT-VPTGGKFP 294 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE--CTTTEEEEEEECTTTTTEEEEEE-EEESSSSE
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe--ccCCEEEEEEEecCCCceEEEEE-EeCCCCCc
Confidence 3445555666665432 11 12455556677897544432 2346788887521 444444321 222 2222
Q ss_pred ceEEEccCCcEEEEcCCCCCceeEE
Q 048136 172 ATQALLADGSFLIFGGRDSFSYEYI 196 (559)
Q Consensus 172 ~s~~~L~dG~VyvvGG~~~~s~E~y 196 (559)
-..+.-+||+.++++...+..+.+|
T Consensus 295 r~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCeEEEE
Confidence 2345557899888888777778887
No 145
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=33.81 E-value=5e+02 Score=26.02 Aligned_cols=96 Identities=15% Similarity=0.215 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee-cCCCCcccccEEEe--eCCeEEEEcCcCCCCCC
Q 048136 289 DAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLL--PTGDVLLINGAELGSAG 365 (559)
Q Consensus 289 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~L--pdG~V~vvGG~~~g~~g 365 (559)
.+.|+..||.. ..+++|+++ .+.+.+ .-.. -.-|+ ++. -+++|+- |+.+ |
T Consensus 126 enSi~~AgGD~------------------~~y~~dlE~--G~i~r~~rGHt-DYvH~-vv~R~~~~qils-G~ED-G--- 178 (325)
T KOG0649|consen 126 ENSILFAGGDG------------------VIYQVDLED--GRIQREYRGHT-DYVHS-VVGRNANGQILS-GAED-G--- 178 (325)
T ss_pred CCcEEEecCCe------------------EEEEEEecC--CEEEEEEcCCc-ceeee-eeecccCcceee-cCCC-c---
Confidence 68899999742 234566664 455544 2222 23332 343 3566653 4433 3
Q ss_pred ccCCCCCCcccEEEeCCCCCCCeEEecCCC---CCCc--cceeeeEECCCCceEEeCCCCCC
Q 048136 366 WKDADKPCFKPLLYKPSKPPGSRFTELAPS---DIPR--MYHSVANLLPDGRVFVGGSNDND 422 (559)
Q Consensus 366 ~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~---~~~R--~yhs~a~llpdG~Vlv~GG~~~~ 422 (559)
++.+||-.|.. .-+.+.+- ..-| ..-=..+|.-|..=||.||++.-
T Consensus 179 ---------tvRvWd~kt~k--~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~l 229 (325)
T KOG0649|consen 179 ---------TVRVWDTKTQK--HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKL 229 (325)
T ss_pred ---------cEEEEeccccc--eeEEeccccChhhcCcccCceeEEEeccCceEEecCCCce
Confidence 56777777651 22222221 1122 22213556668888999998753
No 146
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.78 E-value=7.6e+02 Score=28.14 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=57.4
Q ss_pred cCCCcEEEEcCCCCCCCeEEEEeCCC-CCCeec--CCCcccc-ccccceEEEccCCcEEEEcCCCCCceeEE-cCCCCCC
Q 048136 129 DVNGNLISTGGFLGGSRTTRYLWGCP-TCDWTE--YPTALKD-GRWYATQALLADGSFLIFGGRDSFSYEYI-PAERTEN 203 (559)
Q Consensus 129 l~dG~i~v~GG~~~g~~~v~~ydp~~-t~~W~~--~~~~m~~-~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~ 203 (559)
.++++-+.+||. || .++.++-.. .+.-.+ .+ .|.. .-|-.-.+...+|+.+|.--.+ .++-+| +..+ +
T Consensus 34 a~~~ryLfTgGR-Dg--~i~~W~~~~d~~~~s~~~~a-sme~HsDWVNDiiL~~~~~tlIS~SsD-tTVK~W~~~~~--~ 106 (735)
T KOG0308|consen 34 APNGRYLFTGGR-DG--IIRLWSVTQDSNEPSTPYIA-SMEHHSDWVNDIILCGNGKTLISASSD-TTVKVWNAHKD--N 106 (735)
T ss_pred CCCCceEEecCC-Cc--eEEEeccccccCCcccchhh-hhhhhHhHHhhHHhhcCCCceEEecCC-ceEEEeecccC--c
Confidence 357887788887 44 455554331 111111 22 2553 3465545555577776654433 467778 6544 2
Q ss_pred CcceeccccccccccccCCccce-EEE-eeCCcEEEEec--CcEEEeeCCCC
Q 048136 204 AYSIPFQFLRDTYDVLENNLYPF-VYL-VPDGNLYIFAN--NRSILLDPRAN 251 (559)
Q Consensus 204 ~w~~~~p~l~~~~d~~~~~~yp~-~~~-l~~G~iyv~Gg--~~~e~yDp~t~ 251 (559)
.| .+..+....| |-- .+. ..+..+++.|| +.+.+||..+.
T Consensus 107 ~~--c~stir~H~D------YVkcla~~ak~~~lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 107 TF--CMSTIRTHKD------YVKCLAYIAKNNELVASGGLDRKIFLWDINTG 150 (735)
T ss_pred ch--hHhhhhcccc------hheeeeecccCceeEEecCCCccEEEEEccCc
Confidence 23 2333444333 222 122 45788888887 45677887755
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=33.76 E-value=1.3e+02 Score=32.99 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=48.1
Q ss_pred eEEEEecCCCCceeeec---CCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCC
Q 048136 319 CARMVVTSPDPVWTTEK---MPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPS 395 (559)
Q Consensus 319 ~~~~d~~~~~~~W~~~~---M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~ 395 (559)
+-++|+..+.++--... +...-..-..-+++||+-+++||... ++-+||-.+. +=+.-+.+
T Consensus 442 VKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas-------------tlsiWDLAap---Tprikael 505 (705)
T KOG0639|consen 442 VKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS-------------TLSIWDLAAP---TPRIKAEL 505 (705)
T ss_pred EEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc-------------eeeeeeccCC---Ccchhhhc
Confidence 34567766544443322 22222233356889999999999741 6788998887 44433333
Q ss_pred CC--CccceeeeEECCCCceEEeCCC
Q 048136 396 DI--PRMYHSVANLLPDGRVFVGGSN 419 (559)
Q Consensus 396 ~~--~R~yhs~a~llpdG~Vlv~GG~ 419 (559)
+. +-.|. -.+-||.+|..+-..
T Consensus 506 tssapaCyA--La~spDakvcFsccs 529 (705)
T KOG0639|consen 506 TSSAPACYA--LAISPDAKVCFSCCS 529 (705)
T ss_pred CCcchhhhh--hhcCCccceeeeecc
Confidence 33 34443 234578888666543
No 148
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.37 E-value=5.6e+02 Score=26.56 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=68.2
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEc-cCC
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALL-ADG 180 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L-~dG 180 (559)
+-+||.+++..-..-.-++.--.....-+.-+++++.... .+.+.||-. . .-..+.- .+..----+.++. -|.
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD---tTFRLWDFR-e-aI~sV~V-FQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD---TTFRLWDFR-E-AIQSVAV-FQGHTDTVTSVVFNTDD 369 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccC---ceeEeccch-h-hcceeee-ecccccceeEEEEecCC
Confidence 4678888777554433343322222335788898886542 345555533 0 0001110 1111111122222 133
Q ss_pred cEEEEcCCCCCceeEEcCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEe--cCcEEEeeCCCCeEEEECC
Q 048136 181 SFLIFGGRDSFSYEYIPAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFA--NNRSILLDPRANYVLREYP 258 (559)
Q Consensus 181 ~VyvvGG~~~~s~E~yP~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~G--g~~~e~yDp~t~~W~~~~p 258 (559)
+ |+.|++..++.+|...|. ..|+..-+.|... -.+.+...++|.++- ++++.+||...++ ++
T Consensus 370 ~--vVSgSDDrTvKvWdLrNM------RsplATIRtdS~~----NRvavs~g~~iIAiPhDNRqvRlfDlnG~R----la 433 (481)
T KOG0300|consen 370 R--VVSGSDDRTVKVWDLRNM------RSPLATIRTDSPA----NRVAVSKGHPIIAIPHDNRQVRLFDLNGNR----LA 433 (481)
T ss_pred c--eeecCCCceEEEeeeccc------cCcceeeecCCcc----ceeEeecCCceEEeccCCceEEEEecCCCc----cc
Confidence 3 457788788888844331 1233222222111 123445566677764 5789999998875 55
Q ss_pred CCC
Q 048136 259 PLP 261 (559)
Q Consensus 259 ~mp 261 (559)
.||
T Consensus 434 RlP 436 (481)
T KOG0300|consen 434 RLP 436 (481)
T ss_pred cCC
Confidence 555
No 149
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=32.32 E-value=6.7e+02 Score=27.01 Aligned_cols=212 Identities=16% Similarity=0.198 Sum_probs=106.2
Q ss_pred CcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccc-cccccceEEEccCCcEEEEcCCCCCceeEE-cCCCCCCCcceec
Q 048136 132 GNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALK-DGRWYATQALLADGSFLIFGGRDSFSYEYI-PAERTENAYSIPF 209 (559)
Q Consensus 132 G~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~-~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~~ 209 (559)
+.-++.++. || ++.+|+.. +. +++.+ +. +.+--..++.-++|+.+..+-.+. +..+| -.+. -+ .
T Consensus 231 ~~~lat~s~-Dg--tvklw~~~-~e--~~l~~-l~gH~~RVs~VafHPsG~~L~TasfD~-tWRlWD~~tk----~E--l 296 (459)
T KOG0272|consen 231 DLNLATASA-DG--TVKLWKLS-QE--TPLQD-LEGHLARVSRVAFHPSGKFLGTASFDS-TWRLWDLETK----SE--L 296 (459)
T ss_pred ccceeeecc-CC--ceeeeccC-CC--cchhh-hhcchhhheeeeecCCCceeeeccccc-chhhcccccc----hh--h
Confidence 445566655 43 56666665 32 23332 32 222234566778999988776542 33444 2211 00 0
Q ss_pred cccccccccccCCccceEEEeeCCcEEEEecCc--EEEeeCCCCeEEEECCCCCCCCCcccCCCceeecccccccccccc
Q 048136 210 QFLRDTYDVLENNLYPFVYLVPDGNLYIFANNR--SILLDPRANYVLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYAR 287 (559)
Q Consensus 210 p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~--~e~yDp~t~~W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~ 287 (559)
=+++... ...|- ..--+||.|.+.||.+ ..+||.++++-+..+ .+... + =.+|-. .
T Consensus 297 L~QEGHs----~~v~~-iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L---~gH~k--~--I~~V~f--s-------- 354 (459)
T KOG0272|consen 297 LLQEGHS----KGVFS-IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL---AGHIK--E--ILSVAF--S-------- 354 (459)
T ss_pred Hhhcccc----cccce-eEecCCCceeeccCccchhheeecccCcEEEEe---ccccc--c--eeeEeE--C--------
Confidence 0111110 01222 2234699999999854 578999998755322 11101 0 012211 1
Q ss_pred cCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeeecCCCCcccccEEEe-e-CCeEEEEcCcCCCCCC
Q 048136 288 VDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTEKMPTPRVMSDGVLL-P-TGDVLLINGAELGSAG 365 (559)
Q Consensus 288 ~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~~M~~~R~~~~av~L-p-dG~V~vvGG~~~g~~g 365 (559)
.+|.-++.||.+ ++|-++|+..-.... -||--+.-.+-|.. | .|+.++..+.+.
T Consensus 355 PNGy~lATgs~D-----------------nt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g~fL~TasyD~---- 410 (459)
T KOG0272|consen 355 PNGYHLATGSSD-----------------NTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEGYFLVTASYDN---- 410 (459)
T ss_pred CCceEEeecCCC-----------------CcEEEeeecccccce---ecccccchhhheEecccCCeEEEEcccCc----
Confidence 278888888865 466777776422211 44433322222222 2 577788777652
Q ss_pred ccCCCCCCcccEEEeCCCCCCCeEEecCCCC--CCccceeeeEECCCCceEEeCCC
Q 048136 366 WKDADKPCFKPLLYKPSKPPGSRFTELAPSD--IPRMYHSVANLLPDGRVFVGGSN 419 (559)
Q Consensus 366 ~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~--~~R~yhs~a~llpdG~Vlv~GG~ 419 (559)
++-+|.+. .|+.+..|. ..+. -| .-+.+||.-++.++.
T Consensus 411 ---------t~kiWs~~-----~~~~~ksLaGHe~kV-~s-~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 411 ---------TVKIWSTR-----TWSPLKSLAGHEGKV-IS-LDISPDSQAIATSSF 450 (459)
T ss_pred ---------ceeeecCC-----CcccchhhcCCccce-EE-EEeccCCceEEEecc
Confidence 56788653 677665542 1111 11 223456666666554
No 150
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=31.45 E-value=2.2e+02 Score=31.79 Aligned_cols=95 Identities=17% Similarity=0.268 Sum_probs=49.7
Q ss_pred cCcEEEEEcCCCCccccccccccccccccCceEEEEecCCCCceeee-cCCCCcc-------cccEEEeeCCeEEEEcCc
Q 048136 288 VDAEVLICGGSVPEAFYFGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMPTPRV-------MSDGVLLPTGDVLLINGA 359 (559)
Q Consensus 288 ~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~-------~~~av~LpdG~V~vvGG~ 359 (559)
.+++||++... ..+..+|..+....|+.. ..+.... ....+++-+++||+....
T Consensus 68 ~~g~vyv~s~~------------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d 129 (527)
T TIGR03075 68 VDGVMYVTTSY------------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD 129 (527)
T ss_pred ECCEEEEECCC------------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC
Confidence 37888886542 234566766555678764 3221100 011345668888874321
Q ss_pred CCCCCCccCCCCCCcccEEEeCCCCCCCeEEecC-CCCCCccc-eeeeEECCCCceEEeC
Q 048136 360 ELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELA-PSDIPRMY-HSVANLLPDGRVFVGG 417 (559)
Q Consensus 360 ~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~-~~~~~R~y-hs~a~llpdG~Vlv~G 417 (559)
+ .+.++|.++.+- .|+.-. ... ..+ ...+-++.+|+|++..
T Consensus 130 --g------------~l~ALDa~TGk~-~W~~~~~~~~--~~~~~tssP~v~~g~Vivg~ 172 (527)
T TIGR03075 130 --A------------RLVALDAKTGKV-VWSKKNGDYK--AGYTITAAPLVVKGKVITGI 172 (527)
T ss_pred --C------------EEEEEECCCCCE-Eeeccccccc--ccccccCCcEEECCEEEEee
Confidence 1 467888877522 577532 211 111 1123334588888753
No 151
>PRK05137 tolB translocation protein TolB; Provisional
Probab=29.73 E-value=7.2e+02 Score=26.58 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=45.9
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
..++|+.+++.+.+..... .......-+||+-+++....++...++++|.. +.+...+.. -.. .......-+||+
T Consensus 228 i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~Lt~-~~~--~~~~~~~spDG~ 302 (435)
T PRK05137 228 VYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTRLTD-SPA--IDTSPSYSPDGS 302 (435)
T ss_pred EEEEECCCCcEEEeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEEccC-CCC--ccCceeEcCCCC
Confidence 6789999988877654322 12234567899755543333445678888987 666555532 111 111233456887
Q ss_pred EEEEc
Q 048136 182 FLIFG 186 (559)
Q Consensus 182 VyvvG 186 (559)
-+++.
T Consensus 303 ~i~f~ 307 (435)
T PRK05137 303 QIVFE 307 (435)
T ss_pred EEEEE
Confidence 55543
No 152
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=28.47 E-value=7e+02 Score=26.07 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=52.5
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
...||..+++.+.+...... -......+||+.+++.....+...++++|.. +.++..+.. ...+......-+||+
T Consensus 260 i~~~d~~~~~~~~l~~~~~~-~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~~~~l~~---~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGI-DTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGEVRRLTF---RGGYNASPSWSPDGD 334 (417)
T ss_pred EEEEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEeec---CCCCccCeEECCCCC
Confidence 56778888887776532211 1122445788766654443344578889988 777765532 223333445556888
Q ss_pred EEEEcCCCCCceeEE
Q 048136 182 FLIFGGRDSFSYEYI 196 (559)
Q Consensus 182 VyvvGG~~~~s~E~y 196 (559)
.+++........++|
T Consensus 335 ~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 335 LIAFVHREGGGFNIA 349 (417)
T ss_pred EEEEEEccCCceEEE
Confidence 887766544334444
No 153
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=28.33 E-value=1.2e+02 Score=29.53 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCcEEEEEEcCCCCCccCCcceEEEEEcCCCCCccEEEEeC
Q 048136 519 PGVHEVVVAMPPSGNIAPPGYYMLSVVLKGIPSPSMWFQVK 559 (559)
Q Consensus 519 ~g~~~~~v~~P~~~~~~ppG~ymlf~~~~gvPS~~~~v~i~ 559 (559)
.|-++++|++|.+ +++|.+=|.+..+|+.|.+..|.|+
T Consensus 178 ~Gl~QvNv~vP~~---~~~G~~~v~itvgg~~S~~~~i~v~ 215 (215)
T TIGR03437 178 VGLYQVNVRVPAG---LATGAVPVVITVGGVTSNAVTIAVQ 215 (215)
T ss_pred CceEEEEEEcCCC---CCCCcEeEEEEECCccCCcEEEEeC
Confidence 3679999999996 3679888888889999999888764
No 154
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=27.04 E-value=5.5e+02 Score=31.40 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=37.8
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCc----------cccc-cccceEEEccCCcEEEEcCCCCCceeE
Q 048136 127 GLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTA----------LKDG-RWYATQALLADGSFLIFGGRDSFSYEY 195 (559)
Q Consensus 127 ~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~----------m~~~-R~y~s~~~L~dG~VyvvGG~~~~s~E~ 195 (559)
++..||.|||+-.. ...+++||+. +...+.+... .... ..-.++++-+||++||.-..+ ..+.+
T Consensus 810 avd~dG~LYVADs~---N~rIrviD~~-tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-n~Irv 884 (1057)
T PLN02919 810 LCAKDGQIYVADSY---NHKIKKLDPA-TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-SLIRY 884 (1057)
T ss_pred eEeCCCcEEEEECC---CCEEEEEECC-CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-CEEEE
Confidence 45578999998543 3689999998 6655433210 0000 112245555689999986543 23445
Q ss_pred E
Q 048136 196 I 196 (559)
Q Consensus 196 y 196 (559)
+
T Consensus 885 i 885 (1057)
T PLN02919 885 L 885 (1057)
T ss_pred E
Confidence 5
No 155
>PRK02889 tolB translocation protein TolB; Provisional
Probab=25.92 E-value=8.3e+02 Score=26.08 Aligned_cols=137 Identities=14% Similarity=0.117 Sum_probs=67.3
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
..+||..+++-+.+...... -.....-+||+-+++....++...++.+|.. +.....+... ... .....-.+||+
T Consensus 222 I~~~dl~~g~~~~l~~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~lt~~--~~~-~~~~~wSpDG~ 296 (427)
T PRK02889 222 VYVHDLATGRRRVVANFKGS-NSAPAWSPDGRTLAVALSRDGNSQIYTVNAD-GSGLRRLTQS--SGI-DTEPFFSPDGR 296 (427)
T ss_pred EEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEEccCCCceEEEEECC-CCCcEECCCC--CCC-CcCeEEcCCCC
Confidence 56788888876665433211 1234567899766543333455678888876 5555444321 011 11233456887
Q ss_pred EEEEcCCCCCceeEE--cCCCCCCCcceeccccccccccccCCccceEEEeeCCcEEEEecC-----cEEEeeCCCCeEE
Q 048136 182 FLIFGGRDSFSYEYI--PAERTENAYSIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANN-----RSILLDPRANYVL 254 (559)
Q Consensus 182 VyvvGG~~~~s~E~y--P~~~~~~~w~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~-----~~e~yDp~t~~W~ 254 (559)
-+++........++| +..+. ....+ .+ ... .+. .....+||+..++... .+.++|..+++..
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g--~~~~l-t~-~g~-----~~~--~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGG--AAQRV-TF-TGS-----YNT--SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCC--ceEEE-ec-CCC-----CcC--ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 555432222234555 32210 11111 11 110 011 1234678876555321 3667888777655
No 156
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=25.84 E-value=8.4e+02 Score=26.12 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred EEeecCCCeEEEEecccccccCCCCCCCCCCCCccccccccccCCccceeeEEEeCCCCCEEeCccCCCcccccCeecCC
Q 048136 52 SVLLPNVDEMVIFDATVWQISRLPLPDYKRPCPMHQNKATNVTNIDCWCHSVFYNVNTLQVTPLKVITDTWCSSGGLDVN 131 (559)
Q Consensus 52 ~~~~~~~gkv~~~gg~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~d 131 (559)
.... .+|+++++|-.. .....+|.....|+++.......-.+.....|
T Consensus 244 v~~~-~dG~~~~vg~~G-------------------------------~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~d 291 (398)
T PLN00033 244 VNRS-PDGDYVAVSSRG-------------------------------NFYLTWEPGQPYWQPHNRASARRIQNMGWRAD 291 (398)
T ss_pred EEEc-CCCCEEEEECCc-------------------------------cEEEecCCCCcceEEecCCCccceeeeeEcCC
Q ss_pred CcEEEEcCCCCCCCeEEEEeCCCCC-----CeecCCCccccccccceEEEccCCcEEEEcCCCCCceeEE-cCCCCCCCc
Q 048136 132 GNLISTGGFLGGSRTTRYLWGCPTC-----DWTEYPTALKDGRWYATQALLADGSFLIFGGRDSFSYEYI-PAERTENAY 205 (559)
Q Consensus 132 G~i~v~GG~~~g~~~v~~ydp~~t~-----~W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w 205 (559)
|.++++|.. -.+..-+-. .. +|.++.. -....-..++....|+.++++|.... ++ ...+ .+-
T Consensus 292 g~l~l~g~~----G~l~~S~d~-G~~~~~~~f~~~~~-~~~~~~l~~v~~~~d~~~~a~G~~G~----v~~s~D~--G~t 359 (398)
T PLN00033 292 GGLWLLTRG----GGLYVSKGT-GLTEEDFDFEEADI-KSRGFGILDVGYRSKKEAWAAGGSGI----LLRSTDG--GKS 359 (398)
T ss_pred CCEEEEeCC----ceEEEecCC-CCcccccceeeccc-CCCCcceEEEEEcCCCcEEEEECCCc----EEEeCCC--Ccc
Q ss_pred ceeccccccccccccCCccceEEEeeCCcEEEEecCcEEE
Q 048136 206 SIPFQFLRDTYDVLENNLYPFVYLVPDGNLYIFANNRSIL 245 (559)
Q Consensus 206 ~~~~p~l~~~~d~~~~~~yp~~~~l~~G~iyv~Gg~~~e~ 245 (559)
+...+...+... ++| .+.-..+++.|+.|.+.+.+
T Consensus 360 W~~~~~~~~~~~----~ly-~v~f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 360 WKRDKGADNIAA----NLY-SVKFFDDKKGFVLGNDGVLL 394 (398)
T ss_pred eeEccccCCCCc----cee-EEEEcCCCceEEEeCCcEEE
No 157
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.63 E-value=4.6e+02 Score=29.79 Aligned_cols=143 Identities=15% Similarity=0.176 Sum_probs=72.3
Q ss_pred EEeeCCcEEEEec--CcEEEeeCCCCe-EEEECCCCCCCCCcccCCCceeecccccccccccccCcEEEEEcCCCCcccc
Q 048136 228 YLVPDGNLYIFAN--NRSILLDPRANY-VLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVDAEVLICGGSVPEAFY 304 (559)
Q Consensus 228 ~~l~~G~iyv~Gg--~~~e~yDp~t~~-W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 304 (559)
.++-+|+.++... .++-++++..+. |. +..+-. ...|- .++..+ +.+..+++.||.+..
T Consensus 80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c--~stir~-H~DYV---kcla~~---------ak~~~lvaSgGLD~~--- 141 (735)
T KOG0308|consen 80 ILCGNGKTLISASSDTTVKVWNAHKDNTFC--MSTIRT-HKDYV---KCLAYI---------AKNNELVASGGLDRK--- 141 (735)
T ss_pred HhhcCCCceEEecCCceEEEeecccCcchh--Hhhhhc-ccchh---eeeeec---------ccCceeEEecCCCcc---
Confidence 3455888888765 457788887653 43 222211 23442 222221 137788999998742
Q ss_pred ccccccccccccCceEEEEecCC-------CCceeeecCC-CCcccccE-EEeeCCeEEEEcCcCCCCCCccCCCCCCcc
Q 048136 305 FGEVEKRLVPALDDCARMVVTSP-------DPVWTTEKMP-TPRVMSDG-VLLPTGDVLLINGAELGSAGWKDADKPCFK 375 (559)
Q Consensus 305 ~~~~~~~~~~a~~s~~~~d~~~~-------~~~W~~~~M~-~~R~~~~a-v~LpdG~V~vvGG~~~g~~g~~~~~~~~~~ 375 (559)
+..+|++.. .+.=+..++. .++...=+ +.-++|.++|.||... .
T Consensus 142 --------------IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-------------~ 194 (735)
T KOG0308|consen 142 --------------IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-------------D 194 (735)
T ss_pred --------------EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc-------------c
Confidence 222333211 1222222444 33332212 2335677888888652 4
Q ss_pred cEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceEEeCCCC
Q 048136 376 PLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSND 420 (559)
Q Consensus 376 ~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~ 420 (559)
..+|||.+.. +-..+- --+-.--+.++..||+=++.|+.+
T Consensus 195 lr~wDprt~~--kimkLr---GHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 195 LRLWDPRTCK--KIMKLR---GHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred eEEecccccc--ceeeee---ccccceEEEEEcCCCCeEeecCCC
Confidence 6899999871 211111 011111245678899665555543
No 158
>PRK03629 tolB translocation protein TolB; Provisional
Probab=25.60 E-value=8.5e+02 Score=26.08 Aligned_cols=83 Identities=7% Similarity=-0.030 Sum_probs=48.6
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
...||..+++.+++..... ........+||+.+++.....+...++.+|.. +.+-..+.. ...........+||+
T Consensus 269 I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~~~lt~---~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 269 LYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAPQRITW---EGSQNQDADVSSDGK 343 (429)
T ss_pred EEEEECCCCCEEEccCCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCeEEeec---CCCCccCEEECCCCC
Confidence 5678998888887754321 22345667899866665443344577788887 555544421 111222344567888
Q ss_pred EEEEcCCC
Q 048136 182 FLIFGGRD 189 (559)
Q Consensus 182 VyvvGG~~ 189 (559)
.++.....
T Consensus 344 ~Ia~~~~~ 351 (429)
T PRK03629 344 FMVMVSSN 351 (429)
T ss_pred EEEEEEcc
Confidence 77665543
No 159
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=25.53 E-value=2.6e+02 Score=29.47 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=34.9
Q ss_pred EEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCC
Q 048136 103 VFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTC 156 (559)
Q Consensus 103 ~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~ 156 (559)
-+|...++.-.++-.-++..|..+-+++||+-+++|=. + .++.+|||+ ++
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-d--gti~~Wn~k-tg 222 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-D--GTIIVWNPK-TG 222 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-C--ceEEEEecC-CC
Confidence 34544443333333347788999999999999998754 3 478999998 66
No 160
>COG3656 Predicted periplasmic protein [Function unknown]
Probab=25.31 E-value=1.1e+02 Score=27.59 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=31.4
Q ss_pred CcceEEeeeeeeecc-cCCCcEEEEEEcCC-CCCccCCcceEEEEEc
Q 048136 502 NQRLIELAIIEIKND-VYPGVHEVVVAMPP-SGNIAPPGYYMLSVVL 546 (559)
Q Consensus 502 ~qR~v~l~~~~~~~~-~~~g~~~~~v~~P~-~~~~~ppG~ymlf~~~ 546 (559)
+.|.+.+++...++. -.||.+.+...--. .-.++|||-|.|.|=.
T Consensus 85 ~Gr~vs~p~dgVsgaTR~pG~y~l~~dg~k~~lk~lppG~Y~lvVEa 131 (172)
T COG3656 85 NGRLVSTPIDGVSGATRNPGTYALAWDGKKDKLKLLPPGDYYLVVEA 131 (172)
T ss_pred cCeEEeccccccccCcCCCCceEEEecCccchhccCCCCcEEEEEEe
Confidence 678999988765432 22567777664444 3468999999998865
No 161
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=25.18 E-value=1.1e+02 Score=20.03 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=16.5
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEe
Q 048136 126 GGLDVNGNLISTGGFLGGSRTTRYLW 151 (559)
Q Consensus 126 ~~~l~dG~i~v~GG~~~g~~~v~~yd 151 (559)
-...+++..+++||.+ +.+++||
T Consensus 17 i~~~~~~~~~~s~~~D---~~i~vwd 39 (39)
T PF00400_consen 17 IAWSPDGNFLASGSSD---GTIRVWD 39 (39)
T ss_dssp EEEETTSSEEEEEETT---SEEEEEE
T ss_pred EEEecccccceeeCCC---CEEEEEC
Confidence 3445678888998873 5788776
No 162
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.09 E-value=35 Score=28.79 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=7.0
Q ss_pred CcchhHHHHHHHHH
Q 048136 1 MAATSKLVFILAVL 14 (559)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (559)
|| ||.+++|+++
T Consensus 1 Ma--SK~~llL~l~ 12 (95)
T PF07172_consen 1 MA--SKAFLLLGLL 12 (95)
T ss_pred Cc--hhHHHHHHHH
Confidence 55 7766555544
No 163
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=24.91 E-value=1.5e+02 Score=28.12 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=36.8
Q ss_pred EeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceEEeCCC
Q 048136 347 LLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSN 419 (559)
Q Consensus 347 ~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~ 419 (559)
--|+|+.++++|... .. -.+++||..+. +.+.....+. .+...-.||||-+++-..
T Consensus 108 wsP~G~~l~~~g~~n-~~---------G~l~~wd~~~~-----~~i~~~~~~~--~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 108 WSPDGRFLVLAGFGN-LN---------GDLEFWDVRKK-----KKISTFEHSD--ATDVEWSPDGRYLATATT 163 (194)
T ss_pred ECCCCCEEEEEEccC-CC---------cEEEEEECCCC-----EEeeccccCc--EEEEEEcCCCCEEEEEEe
Confidence 448999999999752 21 26899998743 3444433332 234566899999887654
No 164
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=24.68 E-value=7.3e+02 Score=25.64 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.2
Q ss_pred cceeeEEEeCCCCCEEeCccCCC---cccccCeecCC--CcEEEEcCCCCCCCeEEEEeCC
Q 048136 98 CWCHSVFYNVNTLQVTPLKVITD---TWCSSGGLDVN--GNLISTGGFLGGSRTTRYLWGC 153 (559)
Q Consensus 98 ~~~~~~~yDp~t~~w~~~~~~~~---~~c~~~~~l~d--G~i~v~GG~~~g~~~v~~ydp~ 153 (559)
|-..+.+||+.+++-..+.. |+ .-|+ .+.. -.++++|-++ +++..+|++
T Consensus 92 ~Dk~~k~wDL~S~Q~~~v~~-Hd~pvkt~~---wv~~~~~~cl~TGSWD---KTlKfWD~R 145 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVSQVAA-HDAPVKTCH---WVPGMNYQCLVTGSWD---KTLKFWDTR 145 (347)
T ss_pred cCCceEEEEccCCCeeeeee-cccceeEEE---EecCCCcceeEecccc---cceeecccC
Confidence 44568999999998887753 22 1222 1222 3478898884 789999987
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=24.48 E-value=2.2e+02 Score=32.24 Aligned_cols=63 Identities=19% Similarity=-0.002 Sum_probs=35.9
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEEeCCCCCC--eecCCCccccccccceEEEccCCcEEEEcCCCC---CceeEE
Q 048136 128 LDVNGNLISTGGFLGGSRTTRYLWGCPTCD--WTEYPTALKDGRWYATQALLADGSFLIFGGRDS---FSYEYI 196 (559)
Q Consensus 128 ~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~--W~~~~~~m~~~R~y~s~~~L~dG~VyvvGG~~~---~s~E~y 196 (559)
--+||+.+.+=+- | ..+++|+|. +.. -.+... -...|..--.-++ ||+++|+-|.+. ..+.+|
T Consensus 728 WSpdGr~~AtVcK-D--g~~rVy~Pr-s~e~pv~Eg~g-pvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y 795 (1012)
T KOG1445|consen 728 WSPDGRRIATVCK-D--GTLRVYEPR-SREQPVYEGKG-PVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMY 795 (1012)
T ss_pred ECCCCcceeeeec-C--ceEEEeCCC-CCCCccccCCC-CccCcceeEEEEe-cCcEEEEecccccchhhhhhh
Confidence 3456766555443 2 378999998 432 222222 2234543223345 999999999875 234556
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.34 E-value=6.9e+02 Score=30.37 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=19.9
Q ss_pred CCcEEEEec-CcEEEeeCCCCeEEEEC
Q 048136 232 DGNLYIFAN-NRSILLDPRANYVLREY 257 (559)
Q Consensus 232 ~G~iyv~Gg-~~~e~yDp~t~~W~~~~ 257 (559)
.|++++.|+ +.+.+||....+....+
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeec
Confidence 799999886 56789999887755433
No 167
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=23.92 E-value=3.8e+02 Score=27.58 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=40.8
Q ss_pred ceEEEEecCCCCceeee-cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeEEe-cCCC
Q 048136 318 DCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRFTE-LAPS 395 (559)
Q Consensus 318 s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~-~~~~ 395 (559)
++..+|+.. .-... .+...+.+. + - ..|.++|+|+.+. .+.+||-.+..- -++. -.++
T Consensus 117 ~ik~wD~R~---~~~~~~~d~~kkVy~-~-~-v~g~~LvVg~~~r-------------~v~iyDLRn~~~-~~q~reS~l 176 (323)
T KOG1036|consen 117 TIKFWDPRN---KVVVGTFDQGKKVYC-M-D-VSGNRLVVGTSDR-------------KVLIYDLRNLDE-PFQRRESSL 176 (323)
T ss_pred cEEEEeccc---cccccccccCceEEE-E-e-ccCCEEEEeecCc-------------eEEEEEcccccc-hhhhccccc
Confidence 456677652 11112 233335544 2 2 2677788887652 678999776511 1111 1112
Q ss_pred CCCccceeeeEECCCCceEEeCCCCC
Q 048136 396 DIPRMYHSVANLLPDGRVFVGGSNDN 421 (559)
Q Consensus 396 ~~~R~yhs~a~llpdG~Vlv~GG~~~ 421 (559)
... --+..++|++.=|+.|+-..
T Consensus 177 kyq---tR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 177 KYQ---TRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred eeE---EEEEEEecCCCceEEEeecc
Confidence 111 01344567777777777543
No 168
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=23.59 E-value=9.9e+02 Score=26.13 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred EeeCCcEEEEe-cCcEEEeeCCCCe--EEEECCCCCCCCCcccCCCceeecccccccccccccC-cEEEEEcCCCCcccc
Q 048136 229 LVPDGNLYIFA-NNRSILLDPRANY--VLREYPPLPGGARNYPSTSTSVLLPLKLYRDYYARVD-AEVLICGGSVPEAFY 304 (559)
Q Consensus 229 ~l~~G~iyv~G-g~~~e~yDp~t~~--W~~~~p~mp~~~~~~p~~g~~v~lpl~~~~~~~~~~~-gkI~v~GG~~~~~~~ 304 (559)
+..+|+||+.. ...+..+|.++++ |. .-...+......+.....+.+ .+ ++||+....
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~-~~~~~~~~~~~~~~~~~g~~~-----------~~~~~V~v~~~~------ 119 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWR-YDPKLPADRGCCDVVNRGVAY-----------WDPRKVFFGTFD------ 119 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhce-eCCCCCccccccccccCCcEE-----------ccCCeEEEecCC------
Q ss_pred ccccccccccccCceEEEEecCCCCceeee-cCC--CCcccccEEEeeCCeEEEEc--------CcCCCCCCccCCCCCC
Q 048136 305 FGEVEKRLVPALDDCARMVVTSPDPVWTTE-KMP--TPRVMSDGVLLPTGDVLLIN--------GAELGSAGWKDADKPC 373 (559)
Q Consensus 305 ~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~--~~R~~~~av~LpdG~V~vvG--------G~~~g~~g~~~~~~~~ 373 (559)
..+..+|..+....|+.. .-. ..-...++.++.+++||+.. |...
T Consensus 120 ------------g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g------------ 175 (488)
T cd00216 120 ------------GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG------------ 175 (488)
T ss_pred ------------CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCc------------
Q ss_pred cccEEEeCCCCCCCeEEecCCCCC------------------CccceeeeEECCCCceEEeCCC
Q 048136 374 FKPLLYKPSKPPGSRFTELAPSDI------------------PRMYHSVANLLPDGRVFVGGSN 419 (559)
Q Consensus 374 ~~~e~YDP~t~~g~~Wt~~~~~~~------------------~R~yhs~a~llpdG~Vlv~GG~ 419 (559)
.+.++|.++.+- .|+.-...+. +....+.++-..+|+||+..++
T Consensus 176 -~v~alD~~TG~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~ 237 (488)
T cd00216 176 -ALRAYDVETGKL-LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGN 237 (488)
T ss_pred -EEEEEECCCCce-eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCC
No 169
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.02 E-value=3.2e+02 Score=28.85 Aligned_cols=131 Identities=17% Similarity=0.259 Sum_probs=70.7
Q ss_pred CCcEEEEecCcEEEeeCCCCeEEEECCCCCCCCCcccCCC-ceeecccccccccccccCcEEEEEcCCCCcccccccccc
Q 048136 232 DGNLYIFANNRSILLDPRANYVLREYPPLPGGARNYPSTS-TSVLLPLKLYRDYYARVDAEVLICGGSVPEAFYFGEVEK 310 (559)
Q Consensus 232 ~G~iyv~Gg~~~e~yDp~t~~W~~~~p~mp~~~~~~p~~g-~~v~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~ 310 (559)
.+.+|+.+|..+++||+..+. .+..| ++.... .++ -.. ...-.|++++|.+
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~---Pv~sm-----swG~Dti~sv--kfN-------pvETsILas~~sD----------- 209 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDN---PVSSM-----SWGADSISSV--KFN-------PVETSILASCASD----------- 209 (433)
T ss_pred ccccccccCceeeecccccCC---cccee-----ecCCCceeEE--ecC-------CCcchheeeeccC-----------
Confidence 467889999999999997653 23222 221110 111 000 1345677777765
Q ss_pred ccccccCceEEEEecCCCCceeee-cCCCCcccccEEEeeCCeEEEEcCcCCCCCCccCCCCCCcccEEEeCCCCCCCeE
Q 048136 311 RLVPALDDCARMVVTSPDPVWTTE-KMPTPRVMSDGVLLPTGDVLLINGAELGSAGWKDADKPCFKPLLYKPSKPPGSRF 389 (559)
Q Consensus 311 ~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~av~LpdG~V~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W 389 (559)
.+...||.....+.=... .|..--..-+ |++-+|++|-.+. ....||-..-
T Consensus 210 ------rsIvLyD~R~~~Pl~KVi~~mRTN~Iswn----PeafnF~~a~ED~-------------nlY~~DmR~l----- 261 (433)
T KOG0268|consen 210 ------RSIVLYDLRQASPLKKVILTMRTNTICWN----PEAFNFVAANEDH-------------NLYTYDMRNL----- 261 (433)
T ss_pred ------CceEEEecccCCccceeeeeccccceecC----ccccceeeccccc-------------cceehhhhhh-----
Confidence 244567776533322222 5543322222 5777777765431 3455664322
Q ss_pred EecCCCCCCccceeeeEE----CCCCceEEeCCCCC
Q 048136 390 TELAPSDIPRMYHSVANL----LPDGRVFVGGSNDN 421 (559)
Q Consensus 390 t~~~~~~~~R~yhs~a~l----lpdG~Vlv~GG~~~ 421 (559)
-.|+.+-+ .|..|++ -|-|+=+|.|+.+-
T Consensus 262 --~~p~~v~~-dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 262 --SRPLNVHK-DHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred --cccchhhc-ccceeEEEeccCCCcchhccccccc
Confidence 12344333 4666766 46688888888653
No 170
>PRK04922 tolB translocation protein TolB; Provisional
Probab=21.57 E-value=1e+03 Score=25.45 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=47.3
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
..+||+.+++.+++..... ........+||+-+++.....+...++++|.. +.++..+.. ..++....+.-+||+
T Consensus 274 Iy~~d~~~g~~~~lt~~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~lt~---~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 274 IYVMDLGSRQLTRLTNHFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERLTF---QGNYNARASVSPDGK 348 (433)
T ss_pred EEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEeec---CCCCccCEEECCCCC
Confidence 5677888888777653211 11234567899866665443444578888877 666665431 223333445566887
Q ss_pred EEEEc
Q 048136 182 FLIFG 186 (559)
Q Consensus 182 VyvvG 186 (559)
.+++.
T Consensus 349 ~Ia~~ 353 (433)
T PRK04922 349 KIAMV 353 (433)
T ss_pred EEEEE
Confidence 66654
No 171
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=21.49 E-value=9.8e+02 Score=26.97 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=74.7
Q ss_pred ccEEEeCCCCCCCeEEecCCCCCCccceeeeEECCCCceEEeCCCCCCCCcccCCCCCcceeeEEcCCCCC------CC-
Q 048136 375 KPLLYKPSKPPGSRFTELAPSDIPRMYHSVANLLPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLA------PE- 447 (559)
Q Consensus 375 ~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~llpdG~Vlv~GG~~~~~~~~~~~~~~~~~~E~y~Ppyl~------~~- 447 (559)
++..+|-+.. +|-.-=....+-..+ +-+-+--.++.+|+.. ..+|.|+|-.=. -.
T Consensus 156 evYRlNLEqG---rfL~P~~~~~~~lN~--v~in~~hgLla~Gt~~-------------g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 156 EVYRLNLEQG---RFLNPFETDSGELNV--VSINEEHGLLACGTED-------------GVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ceEEEEcccc---cccccccccccccee--eeecCccceEEecccC-------------ceEEEecchhhhhheeeeccc
Confidence 5667788888 884311112222222 2233344556667643 268888886521 11
Q ss_pred cCCCCCcccccCCCCccCCCC-eEEEEEEeccc-------------------cccceEEEEEEcCCcccccccCCcceEE
Q 048136 448 LADRRPMILVDETEKAAPYGK-WVGIKVKSAEM-------------------LNEFDLMVTMIAPPFVTHSISMNQRLIE 507 (559)
Q Consensus 448 ~~~~RP~i~~~~~p~~~~~g~-~~~v~~~~~~~-------------------~~~~~~~v~l~~~~~~TH~~~~~qR~v~ 507 (559)
.-..+|-+..+.+++++++-. -++|-+-...+ ....|.++-.++..-.---+.||.|.+.
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~k 297 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILK 297 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhh
Confidence 112478777764456666543 45444432210 0011233333333222333455555555
Q ss_pred eeeeeeecccCCCcEEEEEEcCCCCCccCCcceEEEEEcCCCC
Q 048136 508 LAIIEIKNDVYPGVHEVVVAMPPSGNIAPPGYYMLSVVLKGIP 550 (559)
Q Consensus 508 l~~~~~~~~~~~g~~~~~v~~P~~~~~~ppG~ymlf~~~~gvP 550 (559)
|=-.... . ....+.=+.+=|-...-||--|+|+-+++.|
T Consensus 298 iWd~~~G-k---~~asiEpt~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 298 IWDECTG-K---PMASIEPTSDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred hcccccC-C---ceeeccccCCcCceeeecCCceEEEecCCCc
Confidence 4221110 0 1122333445566778899999999986533
No 172
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.13 E-value=1.4e+02 Score=29.68 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred cCCccceeeEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccce
Q 048136 94 TNIDCWCHSVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYAT 173 (559)
Q Consensus 94 ~~~~~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s 173 (559)
+.+|+. +.+||-.+++.+|+....+..-.-..+...+..++.|-. || +++.||-. ..+-.. +-|-.+- -+
T Consensus 119 gsfD~s--~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~-DG--tvRtydiR-~G~l~s--Dy~g~pi--t~ 188 (307)
T KOG0316|consen 119 GSFDSS--VRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSV-DG--TVRTYDIR-KGTLSS--DYFGHPI--TS 188 (307)
T ss_pred ccccce--eEEEEcccCCCCccchhhhhcCceeEEEecccEEEeecc-CC--cEEEEEee-cceeeh--hhcCCcc--ee
Confidence 455554 789999999999988775554444556667777676654 44 78889976 333211 1133332 23
Q ss_pred EEEccCCcEEEEcCCC
Q 048136 174 QALLADGSFLIFGGRD 189 (559)
Q Consensus 174 ~~~L~dG~VyvvGG~~ 189 (559)
+..-.||....+|-.+
T Consensus 189 vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLD 204 (307)
T ss_pred EEecCCCCEEEEeecc
Confidence 4445577666666544
No 173
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=20.63 E-value=2.2e+02 Score=29.26 Aligned_cols=95 Identities=19% Similarity=0.128 Sum_probs=61.4
Q ss_pred CCccceeeeEECCCCceEEeCCCCCCCCcccCCCCCcceeeEEcCCCCCCCcCCCCCcccccCCCCccCCCCeEEEEEEe
Q 048136 397 IPRMYHSVANLLPDGRVFVGGSNDNDGYQEWAKFPTELRLEKFSPPYLAPELADRRPMILVDETEKAAPYGKWVGIKVKS 476 (559)
Q Consensus 397 ~~R~yhs~a~llpdG~Vlv~GG~~~~~~~~~~~~~~~~~~E~y~Ppyl~~~~~~~RP~i~~~~~p~~~~~g~~~~v~~~~ 476 (559)
..|. | +.+|.-+|.||.+|=+-.+.... + ....|+|+||-..- .-|.| ..|..|..|+|-++.
T Consensus 117 ~Grn-H-Tl~ltdtG~v~afGeNK~GQlGl-g----n~~~~v~s~~~~~~----~~~~v------~~v~cga~ftv~l~~ 179 (443)
T KOG1427|consen 117 AGRN-H-TLVLTDTGQVLAFGENKYGQLGL-G----NAKNEVESTPLPCV----VSDEV------TNVACGADFTVWLSS 179 (443)
T ss_pred hccC-c-EEEEecCCcEEEecccccccccc-c----ccccccccCCCccc----cCccc------eeeccccceEEEeec
Confidence 3453 4 77888999999999875442211 1 22458889887642 12333 346779999999985
Q ss_pred ccccccceEEEEEEcCCccccc----ccCCcceEEeeeee
Q 048136 477 AEMLNEFDLMVTMIAPPFVTHS----ISMNQRLIELAIIE 512 (559)
Q Consensus 477 ~~~~~~~~~~v~l~~~~~~TH~----~~~~qR~v~l~~~~ 512 (559)
. ..+..+-|=..|---|. |||+.-.|.|.|..
T Consensus 180 ~----~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 180 T----ESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred c----cceeecCCccccccccCcchhhccccccceeeeec
Confidence 3 35677777666666665 46677777776654
No 174
>PRK00178 tolB translocation protein TolB; Provisional
Probab=20.24 E-value=1e+03 Score=25.12 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=47.4
Q ss_pred eEEEeCCCCCEEeCccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCCeecCCCccccccccceEEEccCCc
Q 048136 102 SVFYNVNTLQVTPLKVITDTWCSSGGLDVNGNLISTGGFLGGSRTTRYLWGCPTCDWTEYPTALKDGRWYATQALLADGS 181 (559)
Q Consensus 102 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~t~~W~~~~~~m~~~R~y~s~~~L~dG~ 181 (559)
..+||..+++.+.+..... ........+||+-+++....++...++.+|.. +.++..+.. ..+.......-+||+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt~---~~~~~~~~~~Spdg~ 343 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVTF---VGNYNARPRLSADGK 343 (430)
T ss_pred EEEEECCCCCeEEcccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEeec---CCCCccceEECCCCC
Confidence 4567999998887653211 12233456788755554433455678888987 777766532 122223334456777
Q ss_pred EEEEcCC
Q 048136 182 FLIFGGR 188 (559)
Q Consensus 182 VyvvGG~ 188 (559)
.++....
T Consensus 344 ~i~~~~~ 350 (430)
T PRK00178 344 TLVMVHR 350 (430)
T ss_pred EEEEEEc
Confidence 6665443
Done!