BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048137
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 148/302 (49%), Gaps = 21/302 (6%)
Query: 15 FAKELVAGGVAGGFGKTAVAPLERVKILFQTRRA------EFHSIGLFGSIKKIAKTEGA 68
F K+ +AGGVA KTAVAP+ERVK+L Q + A E G+ + +I K +G
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66
Query: 69 MGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPD----VSRGPVLDLIAGSFAGGT 124
+ F+RGN A+V R P AL++ ++Y++ I L D R +L +G AG T
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAFKDKYKQ-IFLGGVDRHKQFWRYFAGNLASGGAAGAT 125
Query: 125 AVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGA 184
++ F YPLD RT+LA + G +A+ + G+ +C + +K GLRGLY+G
Sbjct: 126 SLCFVYPLDFARTRLAADV---------GKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 185 APSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVVRRQ 244
S+ GI Y F Y+ K +P+ I+V + +YP D VRR+
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRR 236
Query: 245 MQVERFSASNSAESRGTMQTLVMIAQKQGWKQLFSGLSINYLKVVPSVAIGFTVYDIMKS 304
M ++ GT+ IA+ +G K F G N L+ + A +YD +K
Sbjct: 237 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLVLYDEIKK 295
Query: 305 YL 306
++
Sbjct: 296 FV 297
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 13/202 (6%)
Query: 114 DLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYK 173
D +AG A + P++ R KL Q+ +SK+ +SAE Y+GI DC + K
Sbjct: 10 DFLAGGVAAAISKTAVAPIE--RVKLLLQVQHASKQ-----ISAEKQYKGIIDCVVRIPK 62
Query: 174 ESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHV---PEDHK---KDIMVKLACGSIA 227
E G +RG ++ FP L F F ++ K+ + HK + LA G A
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAA 122
Query: 228 GLLGQTFTYPLDVVRRQMQVERFSASNSAESRGTMQTLVMIAQKQGWKQLFSGLSINYLK 287
G F YPLD R ++ + + E G + I + G + L+ G +++
Sbjct: 123 GATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQG 182
Query: 288 VVPSVAIGFTVYDIMKSYLRVP 309
++ A F VYD K L P
Sbjct: 183 IIIYRAAYFGVYDTAKGMLPDP 204
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 211 EDHKKDIMVKLACGSIAGLLGQTFTYPLDVVRRQMQVERFSASNSAES--RGTMQTLVMI 268
D + G +A + +T P++ V+ +QV+ S SAE +G + +V I
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 269 AQKQGWKQLFSGLSINYLKVVPSVAIGFTVYDIMK 303
++QG+ + G N ++ P+ A+ F D K
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYK 95
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 117/300 (39%), Gaps = 28/300 (9%)
Query: 18 ELVAGGVAGGFGKTAVAPLERVKILFQTR---------RAEFHSIGLFGSIKKIAKTEGA 68
+ + G A PL+ K+ Q + A G+ G+I + +TEG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 69 MGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLF 128
Y G A + R + +A++ Y+ +++ G L+AGS G AV
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS--RLLAGSTTGALAVAV 121
Query: 129 TYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSL 188
P D+V+ + Q + +Q V A ++ +E G+RGL++G +P++
Sbjct: 122 AQPTDVVKVRFQAQARAGGGRRYQSTVEA----------YKTIAREEGIRGLWKGTSPNV 171
Query: 189 YGIFPYAGLKFYFYEEMKRHVPEDH--KKDIMVKLACGSIAGLLGQTFTYPLDVVRRQMQ 246
+ Y+ +K + + + D+ AG P+DVV+
Sbjct: 172 ARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVK---- 227
Query: 247 VERFSASNSAESRGTMQTLVMIAQKQGWKQLFSGLSINYLKVVPSVAIGFTVYDIMKSYL 306
R+ S + + + +K+G + + G ++L++ + F Y+ +K L
Sbjct: 228 -TRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 217 IMVKLACGSIAGLLGQTFTYPLDVVRRQMQVERFS-----ASNSAESRGTMQTLVMIAQK 271
+ VK A + T+PLD + ++Q++ S + SA+ RG + T++ + +
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 272 QGWKQLFSGLSINYLKVVPSVAIGFTVYDIMKSY 305
+G + L++GL + + ++ +YD +K +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQF 94
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 27 GFGKTAVA-PLERVKILF-QTRRAEFHSIGLFGSIKKIAKTEGAMGFYRGNGASVARIVP 84
GF T +A P++ VK + + ++HS G + + EG FY+G S R+
Sbjct: 213 GFCTTVIASPVDVVKTRYMNSALGQYHSAG--HCALTMLRKEGPRAFYKGFMPSFLRLGS 270
Query: 85 YAALHYMAYEEYRRWIILSF 104
+ + ++ YE+ +R ++ ++
Sbjct: 271 WNVVMFVTYEQLKRALMAAY 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,604,173
Number of Sequences: 62578
Number of extensions: 400240
Number of successful extensions: 880
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 11
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)