Query 048137
Match_columns 332
No_of_seqs 150 out of 1951
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 11:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 8.4E-56 2.9E-60 394.6 26.2 285 12-306 4-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.2E-56 7.6E-61 399.2 20.3 281 17-314 3-294 (303)
3 1okc_A ADP, ATP carrier protei 100.0 4.2E-35 1.4E-39 260.8 18.5 193 109-308 5-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.2E-34 7.6E-39 256.8 18.0 193 113-310 3-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 30.8 35 0.0012 22.9 2.6 42 273-314 33-74 (81)
6 1pp9_G Ubiquinol-cytochrome C 25.4 49 0.0017 22.2 2.6 43 272-314 32-74 (81)
7 2acm_A Mucin-1; auto-catalytic 17.4 36 0.0012 21.2 0.5 19 54-72 41-59 (66)
8 3f2e_A SIRV coat protein; four 16.7 52 0.0018 21.6 1.2 33 256-288 6-42 (100)
9 1y9i_A Low temperature require 13.4 2.1E+02 0.0072 22.3 4.1 44 84-127 111-158 (178)
10 1rfz_A Hypothetical protein AP 11.5 4.3E+02 0.015 20.3 5.2 44 84-127 113-160 (168)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8.4e-56 Score=394.56 Aligned_cols=285 Identities=33% Similarity=0.538 Sum_probs=246.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhcCchhHHHHHHhhcCC------ccccCcHHHHHHHHHHhcCccccccccccchhcchhh
Q 048137 12 MPVFAKELVAGGVAGGFGKTAVAPLERVKILFQTRRA------EFHSIGLFGSIKKIAKTEGAMGFYRGNGASVARIVPY 85 (332)
Q Consensus 12 ~~~~~~~~~~g~~a~~~~~~~~~Pld~vk~~~Q~~~~------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~ 85 (332)
..+++..+++|+++++++.++++|+|++|+|+|++.. ...+.+..+++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4567899999999999999999999999999999753 2346899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC---CChhHHHHHHHHHHHHHHHhhccHHHHHHHhhccccccccccccccccccccCC
Q 048137 86 AALHYMAYEEYRRWIILSFPDVS---RGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYR 162 (332)
Q Consensus 86 ~~~~f~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~ 162 (332)
.+++|++||.+++.+....+... ......+++|++|++++.++++|+|+||+|+|++.... .....|.
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~---------~~~~~~~ 154 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG---------AAQREFT 154 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS---------TTTCSCS
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC---------CcCcCCC
Confidence 99999999999996543322111 12466899999999999999999999999999874211 1135689
Q ss_pred cHHHHHHHHHHhhchhhhccCchhhhhhhhhchhhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHhhhhccccHHHHH
Q 048137 163 GIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVVR 242 (332)
Q Consensus 163 ~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~ik 242 (332)
+.++++++|+++||+++||||+.+++++.++..+++|.+||.+++.+.+....+....+++|++||++++++++|+|+||
T Consensus 155 ~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvk 234 (297)
T 1okc_A 155 GLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 234 (297)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 99999999999999999999999999999999999999999999988765556678889999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCCHHHHHHHHHHhhchhhhcccchhhhhhhhhhhhHHHHHHHHHHHhc
Q 048137 243 RQMQVERFSASNSAESRGTMQTLVMIAQKQGWKQLFSGLSINYLKVVPSVAIGFTVYDIMKSYL 306 (332)
Q Consensus 243 ~r~q~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~ 306 (332)
+|||.+.........|+++++|+++++++||++|||||+.+++++. +.++++|.+||.+|+++
T Consensus 235 tr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 235 RRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999876433233579999999999999999999999999999996 57899999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.2e-56 Score=399.22 Aligned_cols=281 Identities=20% Similarity=0.357 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHhhcCC---------ccccCcHHHHHHHHHHhcCccccccccccchhcchhhHH
Q 048137 17 KELVAGGVAGGFGKTAVAPLERVKILFQTRRA---------EFHSIGLFGSIKKIAKTEGAMGFYRGNGASVARIVPYAA 87 (332)
Q Consensus 17 ~~~~~g~~a~~~~~~~~~Pld~vk~~~Q~~~~---------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~~ 87 (332)
.++++|++|++++.++++|+|++|+|+|++.. ..++.+.++++++++++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999754 235689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHHhhccHHHHHHHhhccccccccccccccccccccCCcHHHH
Q 048137 88 LHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDC 167 (332)
Q Consensus 88 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (332)
++|++||.+++.+.+.. ...+....+++|++|++++.++++|+|+||+|+|++... .....|.+.+++
T Consensus 83 i~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----------~~~~~~~~~~~~ 150 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA----------GGGRRYQSTVEA 150 (303)
T ss_dssp HTTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC----------CCSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc----------CCCCCCCCHHHH
Confidence 99999999999886531 246778899999999999999999999999999998421 113468999999
Q ss_pred HHHHHHhhchhhhccCchhhhhhhhhchhhHHHHHHHHHhhCCCCC--CchhHHHHHHHHHHHHhhhhccccHHHHHHHH
Q 048137 168 FRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDH--KKDIMVKLACGSIAGLLGQTFTYPLDVVRRQM 245 (332)
Q Consensus 168 ~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~g~~ag~~~~~~~~Pld~ik~r~ 245 (332)
+++|+++||+++||||+.+.+++.++..+++|.+||.+++.+.+.. ..+....+++|++||++++++++|+|+||+|+
T Consensus 151 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrl 230 (303)
T 2lck_A 151 YKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY 230 (303)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999886543 35567889999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCHHHHHHHHHHhhchhhhcccchhhhhhhhhhhhHHHHHHHHHHHhccCCCCCcc
Q 048137 246 QVERFSASNSAESRGTMQTLVMIAQKQGWKQLFSGLSINYLKVVPSVAIGFTVYDIMKSYLRVPARDED 314 (332)
Q Consensus 246 q~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~~~ 314 (332)
|.+.. ..|+++++|+++++++||++|||||+.+++++.++.++++|.+||.+|+.+.....+++
T Consensus 231 q~~~~-----~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~~~~ 294 (303)
T 2lck_A 231 MNSAL-----GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSRE 294 (303)
T ss_dssp TTCCS-----SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred Hhccc-----cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 98752 46999999999999999999999999999999999999999999999999876554433
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.2e-35 Score=260.84 Aligned_cols=193 Identities=26% Similarity=0.404 Sum_probs=167.5
Q ss_pred CChhHHHHHHHHHHHHHHHhhccHHHHHHHhhccccccccccccccccccccCCcHHHHHHHHHHhhchhhhccCchhhh
Q 048137 109 RGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSL 188 (332)
Q Consensus 109 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~ 188 (332)
.+....+++|++|++++.++++|+|+||+|+|++....+. .....|++.++++++++++||+++||||+.+.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~-------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l 77 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI-------SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANV 77 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC-------CGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc-------ccccccccHHHHHHHHHhccchhheecccHHHH
Confidence 3467789999999999999999999999999998532110 113568999999999999999999999999999
Q ss_pred hhhhhchhhHHHHHHHHHhhC-CCCCC-----chhHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhccCCCCCCCCCHH
Q 048137 189 YGIFPYAGLKFYFYEEMKRHV-PEDHK-----KDIMVKLACGSIAGLLGQTFTYPLDVVRRQMQVERFSASNSAESRGTM 262 (332)
Q Consensus 189 ~~~~~~~~~~~~~y~~~~~~~-~~~~~-----~~~~~~~~~g~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~ 262 (332)
++.++..+++|.+||.+++.+ ..... ......+++|++||++++++++|+|+||+|+|.+.........|++++
T Consensus 78 ~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~ 157 (297)
T 1okc_A 78 IRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLG 157 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHH
Confidence 999999999999999999953 32221 234678999999999999999999999999999864333346799999
Q ss_pred HHHHHHHHhhchhhhcccchhhhhhhhhhhhHHHHHHHHHHHhccC
Q 048137 263 QTLVMIAQKQGWKQLFSGLSINYLKVVPSVAIGFTVYDIMKSYLRV 308 (332)
Q Consensus 263 ~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~~ 308 (332)
+++++++++||++|||||+.+++++.++.+++.|.+||.+|+.+..
T Consensus 158 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 158 NCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998754
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.2e-34 Score=256.79 Aligned_cols=193 Identities=23% Similarity=0.366 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhhccccccccccccccccccccCCcHHHHHHHHHHhhchhhhccCchhhhhhhh
Q 048137 113 LDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIF 192 (332)
Q Consensus 113 ~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~ 192 (332)
..+++|++|++++.++++|+|+||+|+|++....... .......|++.++++++|+++||+++||||+.+.+++.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 78 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV----RTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQM 78 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH----HHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc----ccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHH
Confidence 3578999999999999999999999999984321100 001124689999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHhhCCCC-CCchhHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHh
Q 048137 193 PYAGLKFYFYEEMKRHVPED-HKKDIMVKLACGSIAGLLGQTFTYPLDVVRRQMQVERFSASNSAESRGTMQTLVMIAQK 271 (332)
Q Consensus 193 ~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~i~~~ 271 (332)
+..+++|.+||.+++.+.+. ...+....+++|++||+++.++++|+|+||+|+|.+.... ....|++.++++++|+++
T Consensus 79 ~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 79 SFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG-GGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp HHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC-CSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC-CCCCCCCHHHHHHHHHHh
Confidence 99999999999999988654 3456788999999999999999999999999999986431 235799999999999999
Q ss_pred hchhhhcccchhhhhhhhhhhhHHHHHHHHHHHhccCCC
Q 048137 272 QGWKQLFSGLSINYLKVVPSVAIGFTVYDIMKSYLRVPA 310 (332)
Q Consensus 272 ~G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~ 310 (332)
||++|||||+.+++++.++..++.|.+||.+|+.+....
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999987654
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=30.80 E-value=35 Score=22.91 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=33.3
Q ss_pred chhhhcccchhhhhhhhhhhhHHHHHHHHHHHhccCCCCCcc
Q 048137 273 GWKQLFSGLSINYLKVVPSVAIGFTVYDIMKSYLRVPARDED 314 (332)
Q Consensus 273 G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~~~ 314 (332)
|+...+|-+...++..+|..++...+|+..++.-+....+++
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnp 74 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNP 74 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCG
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 556666667777888999999999999999888776666653
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=25.38 E-value=49 Score=22.17 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=34.4
Q ss_pred hchhhhcccchhhhhhhhhhhhHHHHHHHHHHHhccCCCCCcc
Q 048137 272 QGWKQLFSGLSINYLKVVPSVAIGFTVYDIMKSYLRVPARDED 314 (332)
Q Consensus 272 ~G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~~~ 314 (332)
.|+...+|-+.-..+..++..++...+|+..++.-+....++.
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp 74 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNP 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4566777777778888999999999999999888776666653
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=17.45 E-value=36 Score=21.15 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHhcCccccc
Q 048137 54 GLFGSIKKIAKTEGAMGFY 72 (332)
Q Consensus 54 ~~~~~~~~i~~~~G~~gly 72 (332)
++...+.+||+++++.|++
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 5778899999999999886
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=16.67 E-value=52 Score=21.60 Aligned_cols=33 Identities=6% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHhhch----hhhcccchhhhhhh
Q 048137 256 AESRGTMQTLVMIAQKQGW----KQLFSGLSINYLKV 288 (332)
Q Consensus 256 ~~~~~~~~~~~~i~~~~G~----~gly~G~~~~l~~~ 288 (332)
+++.+.-.-+..++.+.|+ +.+|+|+.....|.
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 5666666666677777776 55888888776554
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=13.44 E-value=2.1e+02 Score=22.25 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhCC----CCCCChhHHHHHHHHHHHHHHH
Q 048137 84 PYAALHYMAYEEYRRWIILSFP----DVSRGPVLDLIAGSFAGGTAVL 127 (332)
Q Consensus 84 ~~~~~~f~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~a~~~~~~ 127 (332)
...++.|..||..|-......+ ..-......++||+.|++++.+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 4578889999998865443322 2233466678888888776543
No 10
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=11.51 E-value=4.3e+02 Score=20.31 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHH----HhhCCCCCCChhHHHHHHHHHHHHHHH
Q 048137 84 PYAALHYMAYEEYRRWI----ILSFPDVSRGPVLDLIAGSFAGGTAVL 127 (332)
Q Consensus 84 ~~~~~~f~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~a~~~~~~ 127 (332)
...++.|..||..|-.. .+..+..-......+++|+.|++++.+
T Consensus 113 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 160 (168)
T 1rfz_A 113 SIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRL 160 (168)
T ss_dssp TTHHHHHHHHHHHCCTHHHHHHCSSSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 45778888999888433 222233344567788888888876543
Done!