Your job contains 1 sequence.
>048138
IKPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSY
VKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRA
QHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLIL
KL
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048138
(182 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 817 2.0e-81 1
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 505 2.3e-48 1
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 484 3.8e-46 1
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 469 1.5e-44 1
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 468 1.9e-44 1
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 466 3.1e-44 1
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 464 5.0e-44 1
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 463 6.4e-44 1
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 463 6.4e-44 1
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 463 6.4e-44 1
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 462 8.1e-44 1
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 462 8.1e-44 1
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 461 1.0e-43 1
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 460 1.3e-43 1
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 451 1.2e-42 1
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 408 4.3e-38 1
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 396 3.4e-36 1
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 337 1.4e-30 1
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 299 1.5e-26 1
UNIPROTKB|F1PFY2 - symbol:APEX1 "Uncharacterized protein"... 257 4.3e-22 1
TIGR_CMR|CBU_0297 - symbol:CBU_0297 "exodeoxyribonuclease... 250 2.4e-21 1
UNIPROTKB|G3V5Q1 - symbol:APEX1 "DNA-(apurinic or apyrimi... 223 6.6e-21 2
UNIPROTKB|F1M909 - symbol:F1M909 "Uncharacterized protein... 230 3.1e-19 1
UNIPROTKB|F1M910 - symbol:F1M910 "Uncharacterized protein... 230 3.1e-19 1
UNIPROTKB|F1M911 - symbol:F1M911 "Uncharacterized protein... 222 2.2e-18 1
TIGR_CMR|NSE_0415 - symbol:NSE_0415 "exodeoxyribonuclease... 211 3.2e-17 1
GENEDB_PFALCIPARUM|PFC0250c - symbol:PFC0250c "AP endonuc... 172 9.8e-17 2
UNIPROTKB|O97240 - symbol:PFC0250c "AP endonuclease (DNA-... 172 9.8e-17 2
TIGR_CMR|SPO_2509 - symbol:SPO_2509 "exodeoxyribonuclease... 195 1.6e-15 1
TIGR_CMR|ECH_0675 - symbol:ECH_0675 "exodeoxyribonuclease... 181 5.1e-14 1
POMBASE|SPBC3D6.10 - symbol:apn2 "AP-endonuclease Apn2" s... 186 1.2e-13 1
TIGR_CMR|APH_0505 - symbol:APH_0505 "exodeoxyribonuclease... 177 1.3e-13 1
UNIPROTKB|G3V359 - symbol:APEX1 "DNA-(apurinic or apyrimi... 170 7.1e-13 1
UNIPROTKB|P09030 - symbol:xthA "exonuclease III" species:... 169 1.0e-12 1
TAIR|locus:505006392 - symbol:AT3G48425 species:3702 "Ara... 170 2.8e-12 1
UNIPROTKB|E2RCW8 - symbol:APEX2 "Uncharacterized protein"... 170 6.1e-12 1
UNIPROTKB|J9NYZ7 - symbol:APEX2 "Uncharacterized protein"... 170 6.1e-12 1
UNIPROTKB|F1MSK4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 168 1.0e-11 1
UNIPROTKB|Q5E9N9 - symbol:APEX2 "DNA-(apurinic or apyrimi... 168 1.0e-11 1
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 166 1.6e-11 1
UNIPROTKB|Q9UBZ4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 166 1.7e-11 1
UNIPROTKB|H7C4A8 - symbol:APEX1 "DNA-(apurinic or apyrimi... 157 1.7e-11 1
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 138 2.9e-11 2
ASPGD|ASPL0000077623 - symbol:AN4736 species:162425 "Emer... 112 3.4e-11 2
RGD|1586200 - symbol:Apex2l1 "APEX nuclease (apurinic/apy... 162 4.5e-11 1
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 161 5.7e-11 1
UNIPROTKB|Q9KQY7 - symbol:VC1860 "Exodeoxyribonuclease II... 151 1.4e-10 1
TIGR_CMR|VC_1860 - symbol:VC_1860 "exodeoxyribonuclease I... 151 1.4e-10 1
UNIPROTKB|G3V5M0 - symbol:APEX1 "DNA-(apurinic or apyrimi... 145 3.2e-10 1
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 104 1.2e-09 2
UNIPROTKB|G3V3C7 - symbol:APEX1 "DNA-(apurinic or apyrimi... 130 1.2e-08 1
TIGR_CMR|SO_3037 - symbol:SO_3037 "exodeoxyribonuclease I... 129 3.1e-07 1
SGD|S000000115 - symbol:APN2 "Class II abasic (AP) endonu... 103 9.5e-07 2
UNIPROTKB|G3V574 - symbol:APEX1 "DNA-(apurinic or apyrimi... 112 1.0e-06 1
TIGR_CMR|SPO_3425 - symbol:SPO_3425 "exodeoxyribonuclease... 120 8.0e-06 1
GENEDB_PFALCIPARUM|PF14_0285 - symbol:PF14_0285 "exodeoxy... 102 3.8e-05 2
UNIPROTKB|Q8ILF8 - symbol:PF14_0285 "Exodeoxyribonuclease... 102 3.8e-05 2
CGD|CAL0001657 - symbol:APN2 species:5476 "Candida albica... 90 7.8e-05 2
TAIR|locus:2135164 - symbol:AT4G36050 species:3702 "Arabi... 109 0.00098 1
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 147/182 (80%), Positives = 165/182 (90%)
Query: 1 IKPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSY 60
IKPLSV YG G+S HD+EGR+VTAEFDSF+L++ YVPNSGDGL+RLSYRI EWD +LS++
Sbjct: 355 IKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNH 414
Query: 61 VKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRA 120
+KELEK KPV+LTGDLNCAH+EIDI+NPAGN+RSAGFT EERQSFGAN L KGFVDTFR
Sbjct: 415 IKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKGFVDTFRK 474
Query: 121 QHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLIL 180
QH GVVGYTYWGYRHGGRKTN+GWRLDYFLVSQS+A HDSYILPD+ GSDH PIGLIL
Sbjct: 475 QHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHDSYILPDINGSDHCPIGLIL 534
Query: 181 KL 182
KL
Sbjct: 535 KL 536
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 95/184 (51%), Positives = 131/184 (71%)
Query: 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGD-GLRRLSYRITEWDPSLSSY 60
KP ++T+G+GI+ HD+EGR++T E+D F++++ Y+PN+G GL+RL YRI EWD +Y
Sbjct: 178 KPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAY 237
Query: 61 VKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRA 120
+++L KP+I GDLN AH EID+ NP N++SAGFT EER SF +NFL KG+VD++R
Sbjct: 238 LEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSF-SNFLEKGYVDSYRH 296
Query: 121 QHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDS-YILPDVTGSDHSPIGL 178
+ G G YT+W Y GGR N GWRLDYF+VS+ L D S + V GSDH PIG+
Sbjct: 297 FNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSVMGSDHCPIGV 356
Query: 179 ILKL 182
++ L
Sbjct: 357 VVDL 360
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 88/178 (49%), Positives = 124/178 (69%)
Query: 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYV 61
+PLSVTYGLGI +HD EGR++T EF+ F++++ Y PNS GL RL YR+ +W+ +Y+
Sbjct: 73 EPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLERLEYRM-KWEDDFRAYI 131
Query: 62 KELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQ 121
K L++KK V+ GDLN AH+EID+ NP NR++ GF+DEER+ F L +GF+DT+R
Sbjct: 132 KRLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC-ILEEGFIDTYRYL 190
Query: 122 HRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGL 178
+ G Y++W YR G R N GWRLDYF+VS+ + D+ + I +V GSDH P+ L
Sbjct: 191 YPDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITAAKINSEVMGSDHCPVEL 248
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 92/180 (51%), Positives = 117/180 (65%)
Query: 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYV 61
+PL+VTYG+G +HD EGR++TAEF FFL++ YVPN+ GL RL YR T WD +Y+
Sbjct: 131 EPLNVTYGIGKEEHDKEGRVITAEFPDFFLVTAYVPNASRGLVRLDYRKT-WDVDFRAYL 189
Query: 62 KELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQ 121
L+ +KP++L GDLN AHQEID+ NP GNR++AGFT EER+ F L GF D+FR
Sbjct: 190 CGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGF-TQLLEAGFTDSFREL 248
Query: 122 HRG-VVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLIL 180
+ YT+W Y R N GWRLDYF++S +L DS I GSDH PI L L
Sbjct: 249 YPDQAYAYTFWTYMMNARSKNVGWRLDYFVLSSALLPGLCDSKIRNTAMGSDHCPITLFL 308
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 90/181 (49%), Positives = 116/181 (64%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 138 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDKAFCKFLK 196
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
+L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 197 DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRHLY 256
Query: 123 RGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 257 PNTPYAYTFWTYMMNARAKNVGWRLDYFLLSHSLLSSLCDSKIRSKALGSDHCPITLYLA 316
Query: 182 L 182
L
Sbjct: 317 L 317
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 89/181 (49%), Positives = 116/181 (64%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEF+SF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 138 PLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 196
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
+L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 197 DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRHLY 256
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 257 PNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 316
Query: 182 L 182
L
Sbjct: 317 L 317
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 89/181 (49%), Positives = 116/181 (64%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEF+SF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 138 PLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 196
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
+L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 197 DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 256
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 257 PNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 316
Query: 182 L 182
L
Sbjct: 317 L 317
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 90/181 (49%), Positives = 115/181 (63%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 90/181 (49%), Positives = 115/181 (63%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 90/181 (49%), Positives = 115/181 (63%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 90/181 (49%), Positives = 115/181 (63%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRRFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 90/181 (49%), Positives = 115/181 (63%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRRFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLTALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 89/181 (49%), Positives = 115/181 (63%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFD+F L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDTFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 88/181 (48%), Positives = 116/181 (64%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AE+D+F L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRHLY 257
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+SQS+ DS I GSDH PI L L
Sbjct: 258 PNTAYAYTFWTYMMNARSKNVGWRLDYFLLSQSVLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 88/180 (48%), Positives = 113/180 (62%)
Query: 4 LSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKE 63
L V+YG+G +HD EGR++ AEFD+F L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 LKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLKG 197
Query: 64 LEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHR 123
L KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 LASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYP 257
Query: 124 GVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L L
Sbjct: 258 NTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 317
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 81/175 (46%), Positives = 110/175 (62%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
P+ V G+G + D+ GRL+ AEF F+ + YVPNSG L L R W+ L+ +K
Sbjct: 110 PMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPNSGAKLVNLEKR-GRWEKLLTEKMK 168
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNR-RSAGFTDEERQSFGANFLSKGFVDTFRAQ 121
E+++KKPVI GDLN AH EID+ NP NR ++AGFTD+ER F + L GF DTFRA
Sbjct: 169 EMDEKKPVIYGGDLNVAHNEIDLKNPESNRNKTAGFTDQERGWF-SEMLELGFTDTFRAM 227
Query: 122 HRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPI 176
H Y++W Y R+ + GWRLDY++VS + +K S I+ V GSDH+P+
Sbjct: 228 HPDEKKYSFWSYLANSRQKDVGWRLDYYVVSNRIMNKVKRSDIMSSVMGSDHAPV 282
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 396 (144.5 bits), Expect = 3.4e-36, P = 3.4e-36
Identities = 79/183 (43%), Positives = 107/183 (58%)
Query: 1 IKPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSY 60
I P+ V YG+G + D GR++TAE++ F+L++ YVPNSG L L R+ W+ +Y
Sbjct: 499 IMPIHVEYGIGNEEFDDVGRMITAEYEKFYLINVYVPNSGRKLVNLEPRM-RWEKLFQAY 557
Query: 61 VKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRA 120
VK+L+ KPV++ GD+N +H ID+ NP N ++AGFT EER L GFVDTFR
Sbjct: 558 VKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKM-TELLGLGFVDTFRH 616
Query: 121 QHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLI 179
+ G YT+W Y R N GWRLDY LVS+ K + I GSDH PI +
Sbjct: 617 LYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDHCPITIF 676
Query: 180 LKL 182
+
Sbjct: 677 FNI 679
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 61/117 (52%), Positives = 83/117 (70%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFR 119
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFR 254
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 61/165 (36%), Positives = 98/165 (59%)
Query: 16 DSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGD 75
D EGR++ F + L + Y PN RL++++ + L K L+ +I+ GD
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPNGQKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICGD 152
Query: 76 LNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVG--YTYWGY 133
+N AH+EID+ +P N ++GF ER ++ + L GF+DTFR + G + Y++W Y
Sbjct: 153 VNTAHKEIDLTHPKANANTSGFLPIER-AWIDDLLKLGFIDTFR-EINGEIKEKYSWWSY 210
Query: 134 RHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGL 178
R R+ N GWR+DYF +S+ L DK +++I D+ GSDH+P+G+
Sbjct: 211 RMKARERNVGWRIDYFFISKGLKDKLKNAFIRDDIFGSDHAPVGI 255
>UNIPROTKB|F1PFY2 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0080111 "DNA demethylation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0045739 "positive
regulation of DNA repair" evidence=IEA] [GO:0045454 "cell redox
homeostasis" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR004808
PROSITE:PS51435 GO:GO:0005739 GO:GO:0005813 GO:GO:0048471
GO:GO:0005730 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0080111 GO:GO:0003713
GO:GO:0090305 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0031490 GO:GO:0008081
GO:GO:0016890 GO:GO:0043488 EMBL:AAEX03000382
Ensembl:ENSCAFT00000035985 Uniprot:F1PFY2
Length = 284
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 67/174 (38%), Positives = 87/174 (50%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG G HD EGR VT F L + YVPN+G L L + WD + ++K
Sbjct: 119 PLKVSYGTGDKGHDLEGR-VT----EFVLETAYVPNTGGSLGCLVAQC--WDGAFCKFLK 171
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L + L GDL+ AH+EI + P GN++ AGFT +ERQ FG ++ +
Sbjct: 172 GLASHTSLGLCGDLSVAHEEIHLLYPKGNKQHAGFTRQERQGFGELLRLCHWLTVWGTST 231
Query: 123 RGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSP 175
+ YT+W Y GW LDYFL+S SL DS GSDH P
Sbjct: 232 PNLGYAYTFWTYVRNVPSIIIGWHLDYFLLSHSLLP-LCDSKSCCRALGSDHCP 284
>TIGR_CMR|CBU_0297 [details] [associations]
symbol:CBU_0297 "exodeoxyribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
HSSP:P27695 OMA:ADVFCIQ RefSeq:NP_819340.1
ProteinModelPortal:Q83EM1 PRIDE:Q83EM1 GeneID:1208179
KEGG:cbu:CBU_0297 PATRIC:17929289 ProtClustDB:CLSK913965
BioCyc:CBUR227377:GJ7S-304-MONOMER Uniprot:Q83EM1
Length = 259
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 58/175 (33%), Positives = 83/175 (47%)
Query: 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYV 61
KP VT LG D EGR + A+F S + S Y+P+ G R + D +
Sbjct: 75 KPDRVTTRLGWEHADKEGRYIQADFGSLSVASLYMPSGTTGEHRQKIKFDFMDRYMKRLK 134
Query: 62 KELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQ 121
+ K+ I+ GD N H+EIDI N N++ +G EER F G VD FR
Sbjct: 135 NIVHSKRSFIICGDWNIVHKEIDIKNFKSNQKYSGCLPEERAWLDEVFTKVGLVDAFRVV 194
Query: 122 HRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPI 176
++ YT+W R + N GWR+DY +++ L + I D SDH+P+
Sbjct: 195 NQKPDQYTWWSSRGRAWEKNVGWRIDYQVITSDLKNSVKSERIYKDKRFSDHAPL 249
>UNIPROTKB|G3V5Q1 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634
GO:GO:0005813 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V5Q1 SMR:G3V5Q1 Ensembl:ENST00000555839
ArrayExpress:G3V5Q1 Bgee:G3V5Q1 Uniprot:G3V5Q1
Length = 242
Score = 223 (83.6 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 43/95 (45%), Positives = 59/95 (62%)
Query: 40 GDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTD 99
G GL RL YR WD + ++K L +KP++L GDLN AH+EID+ NP GN+++AGFT
Sbjct: 147 GRGLVRLEYR-QRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTP 205
Query: 100 EERQSFGANFLSKGFVDTFRAQHRGV-VGYTYWGY 133
+ERQ FG + D+FR + YT+W Y
Sbjct: 206 QERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTY 240
Score = 37 (18.1 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 3 PLSVTYGLG 11
PL V+YG+G
Sbjct: 139 PLKVSYGIG 147
>UNIPROTKB|F1M909 [details] [associations]
symbol:F1M909 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00779020 Ensembl:ENSRNOT00000055393 Uniprot:F1M909
Length = 292
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 64/171 (37%), Positives = 87/171 (50%)
Query: 10 LGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKP 69
+G ++HD E R+V AE S + YVPN+G L RL Y+ WD + ++K KP
Sbjct: 138 IGEAEHDQEDRIV-AELASCVIT--YVPNAGRSLVRLEYQQC-WDEAFCKFLK-----KP 188
Query: 70 VILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYT 129
++L G+LN H+EI + NP GN+++A FT +ERQ FG + D R H + T
Sbjct: 189 LVLCGNLNVTHEEIYLCNPKGNKKNADFTPQERQGFGELLQAVPLADNLR--H--LYPNT 244
Query: 130 YWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLIL 180
+G G N W L Y S +DS I V SDH PI L L
Sbjct: 245 VYGLHDGCPPKNISWHLAY-----SFFYLHYDSKIWSKVLDSDHCPITLCL 290
>UNIPROTKB|F1M910 [details] [associations]
symbol:F1M910 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00781547 Ensembl:ENSRNOT00000055392 Uniprot:F1M910
Length = 294
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 64/171 (37%), Positives = 87/171 (50%)
Query: 10 LGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKP 69
+G ++HD E R+V AE S + YVPN+G L RL Y+ WD + ++K KP
Sbjct: 140 IGEAEHDQEDRIV-AELASCVIT--YVPNAGRSLVRLEYQQC-WDEAFCKFLK-----KP 190
Query: 70 VILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYT 129
++L G+LN H+EI + NP GN+++A FT +ERQ FG + D R H + T
Sbjct: 191 LVLCGNLNVTHEEIYLCNPKGNKKNADFTPQERQGFGELLQAVPLADNLR--H--LYPNT 246
Query: 130 YWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLIL 180
+G G N W L Y S +DS I V SDH PI L L
Sbjct: 247 VYGLHDGCPPKNISWHLAY-----SFFYLHYDSKIWSKVLDSDHCPITLCL 292
>UNIPROTKB|F1M911 [details] [associations]
symbol:F1M911 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00777317 Ensembl:ENSRNOT00000055391 Uniprot:F1M911
Length = 278
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 61/171 (35%), Positives = 85/171 (49%)
Query: 10 LGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKP 69
+G ++HD E R+V AE S + YVPN+G L RL Y+ WD + ++K KP
Sbjct: 121 IGEAEHDQEDRIV-AELASCVIT--YVPNAGRSLVRLEYQQC-WDEAFCKFLK-----KP 171
Query: 70 VILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYT 129
++L G+LN H+EI + NP GN+++A FT +ERQ FG + D R + V
Sbjct: 172 LVLCGNLNVTHEEIYLCNPKGNKKNADFTPQERQGFGELLQAVPLADNLRHLYPNTVYAD 231
Query: 130 YWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLIL 180
+ Y FL+S S +DS I V SDH PI L L
Sbjct: 232 FLDYMMDAHPRTS------FLLSYSFFYLHYDSKIWSKVLDSDHCPITLCL 276
>TIGR_CMR|NSE_0415 [details] [associations]
symbol:NSE_0415 "exodeoxyribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
KO:K01142 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000034587 GO:GO:0008853 RefSeq:YP_506301.1
ProteinModelPortal:Q2GDZ5 STRING:Q2GDZ5 GeneID:3931772
KEGG:nse:NSE_0415 PATRIC:22680889 OMA:EKAFSWW
ProtClustDB:CLSK2528138 BioCyc:NSEN222891:GHFU-437-MONOMER
Uniprot:Q2GDZ5
Length = 265
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 60/184 (32%), Positives = 91/184 (49%)
Query: 12 ISDH---DSEGRLVTAEFDSFF-----LLSCYVPNS-GDGLRRLSYRITEWDPSLSSYVK 62
ISD D E R + SFF L+S Y+PN+ G R Y++ ++ +L+ +
Sbjct: 82 ISDEIYMDGEARYIEGVI-SFFDKCIRLISIYIPNAQAAGSPRFEYKM-QFHDALARRIH 139
Query: 63 E--LEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRA 120
L ++L GD+N A ++ID+Y+P GF EER L+ G DTFR
Sbjct: 140 GYLLNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERSKL-RELLNLGLFDTFRM 198
Query: 121 QHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTG----SDHSPI 176
++ +++W YR GG + N G R+D+ L S D D YIL ++ SDH P+
Sbjct: 199 KYPTKQEFSWWDYRGGGLQRNEGMRIDHILASAEGMDHLLDCYILKELRHISRPSDHVPV 258
Query: 177 GLIL 180
+L
Sbjct: 259 VCVL 262
>GENEDB_PFALCIPARUM|PFC0250c [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-(apurinic
or apyrimidinic site) lyase), putative" species:5833 "Plasmodium
falciparum" [GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase
activity" evidence=ISS] [GO:0020011 "apicoplast" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL844502
GO:GO:0020011 HSSP:P27695 RefSeq:XP_001351132.1
ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 172 (65.6 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 46/120 (38%), Positives = 67/120 (55%)
Query: 15 HDSEGRLVTAEFDSFFLLSCYVPNSG-DGLRRLSYRITEWDPSLSSYVKEL--EKKKPVI 71
H EGR++ EF +FFLLS Y PN+G D ++ R+ +D L +V L EK+KP++
Sbjct: 413 HHDEGRVILVEFSNFFLLSTYTPNNGFDHVKFERRRL--FDEQLQKFVTILRNEKQKPLV 470
Query: 72 LTGDLNCAHQEIDIYNPAGNRR------------SAGFTDEERQSFGANFLSKGFVDTFR 119
TGDLN A ++ID+ +PA RR G TD ER++F + VD++R
Sbjct: 471 WTGDLNIAPEDIDLSHPAEFRRMKKGNVPKEFIGQPGCTDFERKNFQKILTAGNLVDSYR 530
Score = 68 (29.0 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 137 GRKTNRGWRLDYFLVSQSLADKFHDSYILP------DVTGSDHSPIGLILK 181
G+ N+ R+D+F+VS+ ++ + +I + GSDH P+ L LK
Sbjct: 565 GKSCNKAMRIDHFIVSKEFLNRINKIHIQGFSVFHNNFYGSDHCPVILYLK 615
>UNIPROTKB|O97240 [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-[apurinic or
apyrimidinic site] lyase), putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL844502 GO:GO:0020011 HSSP:P27695
RefSeq:XP_001351132.1 ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 172 (65.6 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 46/120 (38%), Positives = 67/120 (55%)
Query: 15 HDSEGRLVTAEFDSFFLLSCYVPNSG-DGLRRLSYRITEWDPSLSSYVKEL--EKKKPVI 71
H EGR++ EF +FFLLS Y PN+G D ++ R+ +D L +V L EK+KP++
Sbjct: 413 HHDEGRVILVEFSNFFLLSTYTPNNGFDHVKFERRRL--FDEQLQKFVTILRNEKQKPLV 470
Query: 72 LTGDLNCAHQEIDIYNPAGNRR------------SAGFTDEERQSFGANFLSKGFVDTFR 119
TGDLN A ++ID+ +PA RR G TD ER++F + VD++R
Sbjct: 471 WTGDLNIAPEDIDLSHPAEFRRMKKGNVPKEFIGQPGCTDFERKNFQKILTAGNLVDSYR 530
Score = 68 (29.0 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 137 GRKTNRGWRLDYFLVSQSLADKFHDSYILP------DVTGSDHSPIGLILK 181
G+ N+ R+D+F+VS+ ++ + +I + GSDH P+ L LK
Sbjct: 565 GKSCNKAMRIDHFIVSKEFLNRINKIHIQGFSVFHNNFYGSDHCPVILYLK 615
>TIGR_CMR|SPO_2509 [details] [associations]
symbol:SPO_2509 "exodeoxyribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_167724.1 ProteinModelPortal:Q5LQI1 GeneID:3194499
KEGG:sil:SPO2509 PATRIC:23378419 OMA:KYPYKLA ProtClustDB:CLSK933885
Uniprot:Q5LQI1
Length = 268
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 62/199 (31%), Positives = 92/199 (46%)
Query: 3 PLS-VTYGLGISDHDSEGRLVTAEF---DSFFLLSCYVPN--------SGDGLR--RLSY 48
PL V+ GL D D + R + A + L Y+PN SGD + + Y
Sbjct: 72 PLEDVSRGLPGDDSDEQARWIEATVVGKQALRLCGLYLPNGNPVELTESGDPVPGGKYDY 131
Query: 49 RITEWDPSLSSYVKEL-EKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGA 107
++ W L + EL ++P ++ GD N Q D P R A F E R +F
Sbjct: 132 KL-RWMERLQARATELMAAEEPALMAGDYNIIPQAEDAKRPEAWREDALFRPESRAAF-R 189
Query: 108 NFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPD 167
L+ GF + FRA+ +G Y++W Y+ G N G R+D+FL++ AD D I +
Sbjct: 190 RILNLGFTEAFRARVQGPGHYSFWDYQAGAWNRNDGIRIDHFLLTPQAADLMRDCGIDKE 249
Query: 168 VTG----SDHSPIGLILKL 182
V G SDH P+ + L +
Sbjct: 250 VRGRDKPSDHVPVWVELDI 268
>TIGR_CMR|ECH_0675 [details] [associations]
symbol:ECH_0675 "exodeoxyribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
OMA:EKAFSWW RefSeq:YP_507482.1 ProteinModelPortal:Q2GGF1
STRING:Q2GGF1 GeneID:3927975 KEGG:ech:ECH_0675 PATRIC:20576802
ProtClustDB:CLSK749128 BioCyc:ECHA205920:GJNR-677-MONOMER
Uniprot:Q2GGF1
Length = 281
Score = 181 (68.8 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 50/153 (32%), Positives = 76/153 (49%)
Query: 31 LLSCYVPNSGDGLRR--LSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNP 88
+ S YVPN G + Y++ +D + L+K++ +IL GD N A ID+Y+P
Sbjct: 124 IASIYVPN-GQSIDSDAFQYKLGFFDQLREHALSLLKKEEILILGGDYNVAPYPIDVYDP 182
Query: 89 AGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDY 148
F ER+ F + L+ GF D+FR + +++W Y+ G + NRG R+D
Sbjct: 183 EVMDGKLCFHKSEREKF-RSILNLGFTDSFRVLNDYEKKFSWWNYKAGAWQQNRGLRIDN 241
Query: 149 FLVSQSLADKF-----HDSYILPDVTGSDHSPI 176
L+S DK HD D T SDH+P+
Sbjct: 242 LLLSPQATDKLLSCVIHDKLRGLD-TPSDHAPV 273
>POMBASE|SPBC3D6.10 [details] [associations]
symbol:apn2 "AP-endonuclease Apn2" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004528 "phosphodiesterase I activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006284 "base-excision
repair" evidence=IC] [GO:0008311 "double-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IMP] [GO:0034614
"cellular response to reactive oxygen species" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 PomBase:SPBC3D6.10
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0034614 GO:GO:0004519
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 GO:GO:0004528 KO:K10772
OMA:FIDSYRC GO:GO:0008311 EMBL:AY483158 PIR:T40370
RefSeq:NP_595522.1 ProteinModelPortal:P87175 STRING:P87175
EnsemblFungi:SPBC3D6.10.1 GeneID:2540679 KEGG:spo:SPBC3D6.10
OrthoDB:EOG4GQTDH NextBio:20801803 Uniprot:P87175
Length = 523
Score = 186 (70.5 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 61/175 (34%), Positives = 83/175 (47%)
Query: 16 DSEGRLVTAEFDSFFLLSCYVP-NSGDGLRRLSYRITEWDPSLSSYVKELEKK--KPVIL 72
DSEGR + +F F L+ Y P NSG+ RL YR + +L ++ L K+ + +IL
Sbjct: 132 DSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAFYK-ALRERIERLIKEGNRKIIL 188
Query: 73 TGDLNCAHQEIDIYNPAGNRRSAGFTD--EERQSFGANFLSK--GFV-DTFRAQHRGVVG 127
GD+N ID + R + E RQ L G + D R QH G
Sbjct: 189 VGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLGLLLDIGRIQHPTRKG 248
Query: 128 -YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
+T W R R TN G R+DY L + L D+ I+ +V GSDH P+ L LK
Sbjct: 249 MFTCWNTRLNTRPTNYGTRIDYTLATPDLLPWVQDADIMAEVMGSDHCPVYLDLK 303
>TIGR_CMR|APH_0505 [details] [associations]
symbol:APH_0505 "exodeoxyribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_505100.1 ProteinModelPortal:Q2GKK1 STRING:Q2GKK1
GeneID:3931256 KEGG:aph:APH_0505 PATRIC:20949650 OMA:DVQIGIP
ProtClustDB:CLSK747329 BioCyc:APHA212042:GHPM-529-MONOMER
Uniprot:Q2GKK1
Length = 273
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 50/153 (32%), Positives = 75/153 (49%)
Query: 31 LLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTG-DLNCAHQEIDIYNPA 89
++S YVPN + + ++ L + + K + ++ G D N A +EID+++P
Sbjct: 117 VVSVYVPNGQEVESETFFYKLKFLEHLKDRLLNIMKTEDFLIAGGDFNVAPEEIDVHDPK 176
Query: 90 GNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGV--VGYTYWGYRHGGRKTNRGWRLD 147
F ER F L+ G VD FR G+ +++W YR GG + NRG R+D
Sbjct: 177 ALDGRLCFHILERAKF-REILNNGIVDIFRT-FVGIDRKEFSWWNYREGGWQNNRGLRID 234
Query: 148 YFLVSQSLADKFHDSYILPDVTG----SDHSPI 176
L S +ADK D IL V G SDH+P+
Sbjct: 235 ALLSSPQIADKVLDCSILSKVRGWDTPSDHAPV 267
>UNIPROTKB|G3V359 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V359 SMR:G3V359
Ensembl:ENST00000557592 ArrayExpress:G3V359 Bgee:G3V359
Uniprot:G3V359
Length = 172
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWD 54
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD
Sbjct: 122 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWD 172
>UNIPROTKB|P09030 [details] [associations]
symbol:xthA "exonuclease III" species:83333 "Escherichia
coli K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IDA] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA;IDA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
EchoBASE:EB1066 Pfam:PF03372 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0005622
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 EMBL:X13002
EMBL:M22592 PIR:E64934 RefSeq:NP_416263.1 RefSeq:YP_490010.1
PDB:1AKO PDBsum:1AKO ProteinModelPortal:P09030 SMR:P09030
DIP:DIP-11148N IntAct:P09030 MINT:MINT-1243969 SWISS-2DPAGE:P09030
PaxDb:P09030 PRIDE:P09030 EnsemblBacteria:EBESCT00000001718
EnsemblBacteria:EBESCT00000016194 GeneID:12932910 GeneID:946254
KEGG:ecj:Y75_p1724 KEGG:eco:b1749 PATRIC:32118809 EcoGene:EG11073
HOGENOM:HOG000034587 OMA:EVNAKRW ProtClustDB:PRK11756
BioCyc:EcoCyc:EG11073-MONOMER BioCyc:ECOL316407:JW1738-MONOMER
BioCyc:MetaCyc:EG11073-MONOMER EvolutionaryTrace:P09030
Genevestigator:P09030 GO:GO:0008853 Uniprot:P09030
Length = 268
Score = 169 (64.5 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 53/191 (27%), Positives = 95/191 (49%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFF----LLSCYVPNSGDGLRRLSYRI-TEWDPSL 57
P++V G D +++ R++ AE S +++ Y P + + ++ +L
Sbjct: 73 PIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNL 132
Query: 58 SSYVK-ELEKKKPVILTGDLNCAHQEIDIYNPAGNRR------SAGFTDEERQSFGANFL 110
+Y++ EL++ PV++ GD+N + ++DI NR+ F EER+ +
Sbjct: 133 QNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMD-RLM 191
Query: 111 SKGFVDTFR-AQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVT 169
S G VDTFR A + ++++ YR G NRG R+D L SQ LA+ ++ I ++
Sbjct: 192 SWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIR 251
Query: 170 G----SDHSPI 176
SDH+P+
Sbjct: 252 SMEKPSDHAPV 262
>TAIR|locus:505006392 [details] [associations]
symbol:AT3G48425 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0009507 EMBL:CP002686 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:BT015809
EMBL:BT020215 IPI:IPI00532252 RefSeq:NP_566904.2 UniGene:At.50257
ProteinModelPortal:Q5XF07 SMR:Q5XF07 STRING:Q5XF07 PaxDb:Q5XF07
PRIDE:Q5XF07 EnsemblPlants:AT3G48425.1 GeneID:824001
KEGG:ath:AT3G48425 OMA:KWDKRML ProtClustDB:CLSN2680895
Genevestigator:Q5XF07 Uniprot:Q5XF07
Length = 364
Score = 170 (64.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 47/140 (33%), Positives = 71/140 (50%)
Query: 2 KPLSVTYGLG--ISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSY-RITEWDPSLS 58
KP V + L S H+ +GR++ AEF++F LL+ Y PN+G ++ R +WD +
Sbjct: 147 KPRKVYFNLDKLASKHEPDGRVILAEFETFRLLNTYSPNNGWKDEENAFQRRRKWDKRIV 206
Query: 59 SYVKELEKKKPVILTGDLNCAHQEIDIYNPA--------G----NRRSAG---FTDEERQ 103
++ + K P+I GDLN +H+EID+ +P G N+ G FT ER
Sbjct: 207 EFLNKTSDK-PLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFTPSERG 265
Query: 104 SFGANFLSKGFVDTFRAQHR 123
FGA VD +R H+
Sbjct: 266 RFGATIKEGRLVDAYRYLHK 285
Score = 115 (45.5 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 35/94 (37%), Positives = 44/94 (46%)
Query: 96 GFTDEERQSFGANFLSKGFVDTFRAQHRGVV---GYTYWGYRHGGRKTNRGWRLDYFLVS 152
GFT ER FGA VD +R H+ G++ W G+ + R+DYFLVS
Sbjct: 258 GFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFS-WSGNPIGKYRGKRMRIDYFLVS 316
Query: 153 QSLAD-----KFHDSYI-LPDVTGSDHSPIGLIL 180
+ L D K H I L GSDH P+ L L
Sbjct: 317 EQLKDRIVSCKMHGRGIELEGFHGSDHCPVTLEL 350
>UNIPROTKB|E2RCW8 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 EMBL:AAEX03026400
EMBL:AAEX03026401 Ensembl:ENSCAFT00000022737 Uniprot:E2RCW8
Length = 515
Score = 170 (64.9 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 51/162 (31%), Positives = 79/162 (48%)
Query: 31 LLSCYVPNSGDGL-RRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPA 89
L++ Y P++ G RL++++ + L VI+ GDLN AH ID ++
Sbjct: 152 LINVYCPHADAGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAV 211
Query: 90 GNR---RSAG--FTDEERQSFGANFLS--KGFVDTFRA-QHRGVVGYTYWGYRHGGRKTN 141
G + D + G S + F+D++R Q + +T W G R N
Sbjct: 212 NLECFEEDPGRKWMDGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLN 271
Query: 142 RGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDHSPIGLILKL 182
G RLDY L ++L D F DS++LP+V GSDH P+G +L +
Sbjct: 272 YGSRLDYVLGDRTLVIDTFQDSFLLPEVMGSDHCPVGAVLSV 313
>UNIPROTKB|J9NYZ7 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 OMA:FIDSYRC
EMBL:AAEX03026400 EMBL:AAEX03026401 Ensembl:ENSCAFT00000049032
Uniprot:J9NYZ7
Length = 515
Score = 170 (64.9 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 51/162 (31%), Positives = 79/162 (48%)
Query: 31 LLSCYVPNSGDGL-RRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPA 89
L++ Y P++ G RL++++ + L VI+ GDLN AH ID ++
Sbjct: 152 LINVYCPHADAGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAV 211
Query: 90 GNR---RSAG--FTDEERQSFGANFLS--KGFVDTFRA-QHRGVVGYTYWGYRHGGRKTN 141
G + D + G S + F+D++R Q + +T W G R N
Sbjct: 212 NLECFEEDPGRKWMDGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLN 271
Query: 142 RGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDHSPIGLILKL 182
G RLDY L ++L D F DS++LP+V GSDH P+G +L +
Sbjct: 272 YGSRLDYVLGDRTLVIDTFQDSFLLPEVMGSDHCPVGAVLSV 313
>UNIPROTKB|F1MSK4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 IPI:IPI00696158 UniGene:Bt.1184
OMA:FIDSYRC EMBL:DAAA02073320 EMBL:DAAA02073321
Ensembl:ENSBTAT00000017537 ArrayExpress:F1MSK4 Uniprot:F1MSK4
Length = 514
Score = 168 (64.2 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 51/162 (31%), Positives = 79/162 (48%)
Query: 31 LLSCYVPNSGDGL-RRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPA 89
L++ Y P++ G RL++++ + L VI+ GDLN AH+ ID ++
Sbjct: 152 LINVYCPHADPGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAV 211
Query: 90 GNR---RSAG--FTDEERQSFGANFLSK-G-FVDTFRA-QHRGVVGYTYWGYRHGGRKTN 141
G + D + G S G F+D++R Q + +T W G R N
Sbjct: 212 NMECFEEDPGRKWMDGLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLN 271
Query: 142 RGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDHSPIGLILKL 182
G RLDY L ++L D F S++LP+V GSDH P+G +L +
Sbjct: 272 YGSRLDYVLGDRTLVIDTFQSSFLLPEVMGSDHCPVGAVLSV 313
>UNIPROTKB|Q5E9N9 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:BT020881 EMBL:BT021707 IPI:IPI00696158
RefSeq:NP_001015577.1 UniGene:Bt.1184 ProteinModelPortal:Q5E9N9
STRING:Q5E9N9 PRIDE:Q5E9N9 GeneID:511790 KEGG:bta:511790 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 InParanoid:Q5E9N9 KO:K10772
OrthoDB:EOG4NS3BQ NextBio:20870098 Uniprot:Q5E9N9
Length = 514
Score = 168 (64.2 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 51/162 (31%), Positives = 79/162 (48%)
Query: 31 LLSCYVPNSGDGL-RRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPA 89
L++ Y P++ G RL++++ + L VI+ GDLN AH+ ID ++
Sbjct: 152 LINVYCPHADPGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAV 211
Query: 90 GNR---RSAG--FTDEERQSFGANFLSK-G-FVDTFRA-QHRGVVGYTYWGYRHGGRKTN 141
G + D + G S G F+D++R Q + +T W G R N
Sbjct: 212 NMECFEEDPGRKWMDGLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLN 271
Query: 142 RGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDHSPIGLILKL 182
G RLDY L ++L D F S++LP+V GSDH P+G +L +
Sbjct: 272 YGSRLDYVLGDRTLVIDTFQSSFLLPEVMGSDHCPVGAVLSV 313
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 166 (63.5 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 49/167 (29%), Positives = 80/167 (47%)
Query: 28 SFFLLSCYVPNSGDGL-RRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIY 86
S +++ Y P++ G RL++++ + L VI+ GDLN AH+ ID +
Sbjct: 149 SLTVINVYCPHADPGKPERLTFKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHW 208
Query: 87 NPA---------GNRRSAGFTDEERQSFGANFLSKGFVDTFRA-QHRGVVGYTYWGYRHG 136
+ G + G R G++ F+D++R Q + +T W G
Sbjct: 209 DAVNLECFEEDPGRKWMDGLLSNLRCQAGSHM--GPFIDSYRYFQPKQKGAFTCWSTVTG 266
Query: 137 GRKTNRGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDHSPIGLILKL 182
R N G R+DY L ++L D F S++LP+V GSDH P+G +L +
Sbjct: 267 ARHLNYGSRIDYVLGDRALVMDTFQSSFVLPEVMGSDHCPVGAVLNV 313
>UNIPROTKB|Q9UBZ4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0007049 GO:GO:0006310 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ
EMBL:AB049211 EMBL:AJ011311 EMBL:AB021260 EMBL:AF119046
EMBL:AY884244 EMBL:AL020991 EMBL:BC002959 IPI:IPI00083281
RefSeq:NP_055296.2 UniGene:Hs.659558 ProteinModelPortal:Q9UBZ4
SMR:Q9UBZ4 IntAct:Q9UBZ4 MINT:MINT-1439290 STRING:Q9UBZ4
PhosphoSite:Q9UBZ4 DMDM:73921676 PeptideAtlas:Q9UBZ4 PRIDE:Q9UBZ4
DNASU:27301 Ensembl:ENST00000374987 GeneID:27301 KEGG:hsa:27301
UCSC:uc004dtz.3 GeneCards:GC0XP055043 HGNC:HGNC:17889 HPA:HPA030872
MIM:300773 neXtProt:NX_Q9UBZ4 PharmGKB:PA38474 InParanoid:Q9UBZ4
OMA:FIDSYRC PhylomeDB:Q9UBZ4 GenomeRNAi:27301 NextBio:50285
ArrayExpress:Q9UBZ4 Bgee:Q9UBZ4 CleanEx:HS_APEX2
Genevestigator:Q9UBZ4 GermOnline:ENSG00000169188 Uniprot:Q9UBZ4
Length = 518
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 51/162 (31%), Positives = 78/162 (48%)
Query: 31 LLSCYVPNSGDGL-RRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPA 89
L++ Y P++ G RL +++ + L VI+ GDLN AH+ ID ++
Sbjct: 152 LINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAV 211
Query: 90 GNR---RSAG--FTDEERQSFGANFLSK-G-FVDTFRA-QHRGVVGYTYWGYRHGGRKTN 141
G + D + G S G F+D++R Q + +T W G R N
Sbjct: 212 NLECFEEDPGRKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLN 271
Query: 142 RGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDHSPIGLILKL 182
G RLDY L ++L D F S++LP+V GSDH P+G +L +
Sbjct: 272 YGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSV 313
>UNIPROTKB|H7C4A8 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:H7C4A8 PRIDE:H7C4A8
Ensembl:ENST00000438886 Uniprot:H7C4A8
Length = 150
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 35 YVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNP 88
YVPN+G GL RL YR WD + ++K L +KP++L GDLN AH+EID+ NP
Sbjct: 98 YVPNAGRGLVRLEYR-QRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNP 150
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 138 (53.6 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 32/94 (34%), Positives = 46/94 (48%)
Query: 85 IYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH-RGVVGYTYWGYRHGGRKTNRG 143
++ A N + DE + F + FVD+FR H + +T W G R+TN G
Sbjct: 214 LFETAENSENGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYG 273
Query: 144 WRLDYFLVSQSLADKFHDSY-ILPDVTGSDHSPI 176
R+DY + SL F I+P+V GSDH P+
Sbjct: 274 TRIDYIFSNHSLVKTFFIGVDIMPEVEGSDHCPV 307
Score = 49 (22.3 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 70 VILTGDLNCAHQEIDIYNP 88
VI+ GD+N +H+ ID +P
Sbjct: 177 VIILGDVNTSHRPIDHCDP 195
>ASPGD|ASPL0000077623 [details] [associations]
symbol:AN4736 species:162425 "Emericella nidulans"
[GO:0034614 "cellular response to reactive oxygen species"
evidence=IEA] [GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 EMBL:BN001303 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 OMA:FIDSYRC
EnsemblFungi:CADANIAT00005693 HOGENOM:HOG000193944 Uniprot:C8VAT9
Length = 612
Score = 112 (44.5 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 117 TFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPI 176
+F + +G+ YT W R R N G R+DY L S + D F DS I + GSDH P+
Sbjct: 257 SFHPKRKGM--YTCWEQRINARPGNYGSRIDYVLCSLDMKDWFFDSNIQEGLMGSDHCPV 314
Query: 177 GLILK 181
+ K
Sbjct: 315 YAVFK 319
Score = 104 (41.7 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 16 DSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKK-KPVILTG 74
DSEGR V EF +F L+ Y P + D R ++R D + + V+ L K V +TG
Sbjct: 135 DSEGRCVILEFPAFVLIGLYCPANRDESRD-AFRQNFLD-LMDARVRNLVALGKRVFVTG 192
Query: 75 DLNCAHQEIDIYNPAGNRRSAGFTDEE 101
D+N + EID + A N + G T E+
Sbjct: 193 DINISRGEIDAAHAAENIKK-GVTTED 218
Score = 42 (19.8 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 46 LSYRITEWDPSLSSY--VKELEKKK--PVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEE 101
+S+R D + Y +++L K K L + C E + G A DE
Sbjct: 104 VSFRDLPEDQQIGGYPTIEQLSKLKLDAETLDSEGRCVILEFPAFVLIGLYCPAN-RDES 162
Query: 102 RQSFGANFL 110
R +F NFL
Sbjct: 163 RDAFRQNFL 171
>RGD|1586200 [details] [associations]
symbol:Apex2l1 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2-like 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 RGD:1586200 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
KO:K10772 OrthoDB:EOG4NS3BQ OMA:FIDSYRC IPI:IPI00364584
RefSeq:XP_001059968.1 RefSeq:XP_223499.3 PRIDE:D3ZHV4
Ensembl:ENSRNOT00000038157 GeneID:289662 KEGG:rno:289662
NextBio:630125 Uniprot:D3ZHV4
Length = 516
Score = 162 (62.1 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 51/165 (30%), Positives = 81/165 (49%)
Query: 31 LLSCYVPNSGDGLR-RLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPA 89
L++ Y P++ G RL++++ + L VI+ GD+N AH ID N A
Sbjct: 151 LINVYCPHASPGNHERLTFKMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCN-A 209
Query: 90 GNRRSAGFTDEERQSFGANFLSK-----G-----FVDTFRAQH-RGVVGYTYWGYRHGGR 138
GN F ++ + + LS G F+D++R + + +T W G R
Sbjct: 210 GNLEC--FEEDLGRRWMDGLLSNLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMISGAR 267
Query: 139 KTNRGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDHSPIGLILKL 182
N G RLDY L ++ L D D+++LP+V GSDH P+G +L +
Sbjct: 268 SLNYGTRLDYILGNRDLIIDTLQDAFLLPEVMGSDHCPVGAVLNV 312
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 161 (61.7 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 50/165 (30%), Positives = 78/165 (47%)
Query: 31 LLSCYVPNSGDGL-RRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPA 89
L++ Y P++ G RL++++ + L VI+ GDLN AH+ ID + +
Sbjct: 151 LINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDAS 210
Query: 90 ---------GNRRSAGFTDEERQSFGANFLSKG-FVDTFRAQH-RGVVGYTYWGYRHGGR 138
G + G G + G F+D++R H + +T W G R
Sbjct: 211 SLECFEEDPGRKWMDGLLSNPGDEAGPHI---GLFMDSYRYLHPKQQRAFTCWSVVSGAR 267
Query: 139 KTNRGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDHSPIGLILKL 182
N G RLDY L ++L D F S++LP+V GSDH P+G +L +
Sbjct: 268 HLNYGSRLDYVLGDRALVIDTFQASFLLPEVMGSDHCPVGAVLNV 312
>UNIPROTKB|Q9KQY7 [details] [associations]
symbol:VC1860 "Exodeoxyribonuclease III" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008853 "exodeoxyribonuclease III
activity" evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 151 (58.2 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEF-----DSFFLLSCYVPNSGDGLR---RLSYRITEWD 54
P+ V G + + + R++ A F +L+ Y P GD + + Y+ ++
Sbjct: 73 PVEVIKGFPTDNEEHQKRMIMATFADQNGQKTTILNGYFPQ-GDNVEHETKFPYK-RQFY 130
Query: 55 PSLSSYVKE-LEKKKPVILTGDLNCAHQEIDIYNPAGNRR------SAGFTDEERQSFGA 107
L +Y++E + +++ GD+N + ++DI NR+ F EER+
Sbjct: 131 RDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEEREWL-Q 189
Query: 108 NFLSKGFVDTFRAQHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDS---Y 163
L G VDTFR H V ++++ YR G + NRG R+D L + +LA+ ++ Y
Sbjct: 190 TLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEAGIDY 249
Query: 164 ILPDVTG-SDHSPIGLILK 181
L + SDH+PI K
Sbjct: 250 ELRAIDKPSDHAPIWTTFK 268
>TIGR_CMR|VC_1860 [details] [associations]
symbol:VC_1860 "exodeoxyribonuclease III" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 151 (58.2 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEF-----DSFFLLSCYVPNSGDGLR---RLSYRITEWD 54
P+ V G + + + R++ A F +L+ Y P GD + + Y+ ++
Sbjct: 73 PVEVIKGFPTDNEEHQKRMIMATFADQNGQKTTILNGYFPQ-GDNVEHETKFPYK-RQFY 130
Query: 55 PSLSSYVKE-LEKKKPVILTGDLNCAHQEIDIYNPAGNRR------SAGFTDEERQSFGA 107
L +Y++E + +++ GD+N + ++DI NR+ F EER+
Sbjct: 131 RDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEEREWL-Q 189
Query: 108 NFLSKGFVDTFRAQHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDS---Y 163
L G VDTFR H V ++++ YR G + NRG R+D L + +LA+ ++ Y
Sbjct: 190 TLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEAGIDY 249
Query: 164 ILPDVTG-SDHSPIGLILK 181
L + SDH+PI K
Sbjct: 250 ELRAIDKPSDHAPIWTTFK 268
>UNIPROTKB|G3V5M0 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V5M0 SMR:G3V5M0
Ensembl:ENST00000557150 ArrayExpress:G3V5M0 Bgee:G3V5M0
Uniprot:G3V5M0
Length = 162
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 25/41 (60%), Positives = 33/41 (80%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGL 43
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL
Sbjct: 122 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGL 162
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 104 (41.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 25/62 (40%), Positives = 31/62 (50%)
Query: 116 DTFRAQHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHS 174
D R H +G YT W R R N G R+DY L S + D F D+ I + GSDH
Sbjct: 225 DLGREFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCSAGMKDWFIDANIQEGLLGSDHC 284
Query: 175 PI 176
P+
Sbjct: 285 PV 286
Score = 100 (40.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 16 DSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKK-KPVILTG 74
DSEGR + EF +F L+ Y P + D R +R + ++ + V+ L K V+LTG
Sbjct: 107 DSEGRCMILEFPAFVLIGVYSPATRDETRT-DFR-QAFHKAMDARVRNLVAMGKQVVLTG 164
Query: 75 DLNCAHQEID 84
DLN E+D
Sbjct: 165 DLNIIRNELD 174
>UNIPROTKB|G3V3C7 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0045454 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V3C7 SMR:G3V3C7
Ensembl:ENST00000556054 ArrayExpress:G3V3C7 Bgee:G3V3C7
Uniprot:G3V3C7
Length = 174
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPN 38
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN
Sbjct: 139 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPN 174
>TIGR_CMR|SO_3037 [details] [associations]
symbol:SO_3037 "exodeoxyribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372
GO:GO:0003677 GO:GO:0006281 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 RefSeq:NP_718605.1
ProteinModelPortal:Q8ECT7 GeneID:1170722 KEGG:son:SO_3037
PATRIC:23525710 Uniprot:Q8ECT7
Length = 270
Score = 129 (50.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 51/195 (26%), Positives = 86/195 (44%)
Query: 1 IKPLSVTYGLGISDHDSEGRLVTAEFDS-----FFLLSCYVPNSGDGLRR-LSYRIT-EW 53
+ PL V G + D++ R++ F +L+ Y P G+ + Y ++
Sbjct: 71 VAPLKVQKGFATDEEDAQRRMIIGTFAQANGRPLTVLNGYFPQ-GESIDHPTKYPAKRKF 129
Query: 54 DPSLSSYVKELEKK-KPVILTGDLNCAHQEIDIYNPAGNRR------SAGFTDEERQSFG 106
L +++ + + + GD+N + ++DI NR+ F EER+
Sbjct: 130 YQDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRWLKTGKCSFQPEEREWL- 188
Query: 107 ANFLSKGFVDTFRAQHRG-VVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYIL 165
G VDTFR H Y+++ YR G NRG R+D L + SLA + +S +
Sbjct: 189 KTLQDWGLVDTFRQLHPDRSERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLVESDVD 248
Query: 166 PDVTG----SDHSPI 176
++ G SDH+PI
Sbjct: 249 YELRGIDKPSDHAPI 263
>SGD|S000000115 [details] [associations]
symbol:APN2 "Class II abasic (AP) endonuclease involved in
repair of DNA damage" species:4932 "Saccharomyces cerevisiae"
[GO:0016829 "lyase activity" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IGI] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020848 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 SGD:S000000115
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 EMBL:BK006936 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 GO:GO:0008081 KO:K10772 GO:GO:0008311
OrthoDB:EOG4GQTDH EMBL:Z35780 EMBL:AY693183 PIR:S45753
RefSeq:NP_009534.1 ProteinModelPortal:P38207 DIP:DIP-3930N
IntAct:P38207 MINT:MINT-515848 STRING:P38207 EnsemblFungi:YBL019W
GeneID:852262 KEGG:sce:YBL019W CYGD:YBL019w HOGENOM:HOG000246560
OMA:MYTVWNT NextBio:970856 Genevestigator:P38207 GermOnline:YBL019W
Uniprot:P38207
Length = 520
Score = 103 (41.3 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 115 VDTFRA-QHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSD 172
+DT R Q R + YT W R +N G R+D+ LVS L + ILPD+ GSD
Sbjct: 294 IDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFILVSLKLERCIKAADILPDILGSD 353
Query: 173 HSPI 176
H P+
Sbjct: 354 HCPV 357
Score = 71 (30.1 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 16 DSEGRLVTAEFD-SFFLLSCYVP-NSGDGLRRLSYRITEWDPSLSSYVKELEK-KKPVIL 72
DSEGR V E ++S Y P NS +R+ + L V+ L+K K ++L
Sbjct: 161 DSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRL-RFLKVLLRRVRNLDKIGKKIVL 219
Query: 73 TGDLNCAHQEID 84
GD+N ID
Sbjct: 220 MGDVNVCRDLID 231
>UNIPROTKB|G3V574 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020848 PROSITE:PS00728 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006281 GO:GO:0090305 GO:GO:0045454
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V574
SMR:G3V574 Ensembl:ENST00000557054 ArrayExpress:G3V574 Bgee:G3V574
Uniprot:G3V574
Length = 49
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/45 (55%), Positives = 26/45 (57%)
Query: 138 RKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182
R N GWRLDYFL+S SL DS I GSDH PI L L L
Sbjct: 5 RSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 49
>TIGR_CMR|SPO_3425 [details] [associations]
symbol:SPO_3425 "exodeoxyribonuclease III, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587
RefSeq:YP_168621.1 ProteinModelPortal:Q5LMY7 GeneID:3195340
KEGG:sil:SPO3425 PATRIC:23380309 OMA:KWVDITR ProtClustDB:CLSK863995
Uniprot:Q5LMY7
Length = 262
Score = 120 (47.3 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 36/112 (32%), Positives = 55/112 (49%)
Query: 71 ILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQ-HRGVVGYT 129
IL GDLN A +E D++N + T E G S +VD R +G++ Y+
Sbjct: 146 ILVGDLNIAPREDDVWNHKQLLKIVSHTPIEVDHLGQVMDSGKWVDITRQDIPQGLL-YS 204
Query: 130 YWGYR-HGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTG----SDHSPI 176
+W YR ++G RLD+ + +++ H S IL D G SDH+P+
Sbjct: 205 WWSYRAKDWSAADKGRRLDHVWATPDISNAGHSSRILRDARGWEQPSDHAPV 256
>GENEDB_PFALCIPARUM|PF14_0285 [details] [associations]
symbol:PF14_0285 "exodeoxyribonuclease III,
putative" species:5833 "Plasmodium falciparum" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 102 (41.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 10 LGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK-ELEKKK 68
+ +S+ +EGR++ F +++ Y P SG RL Y++ + + ++ +
Sbjct: 169 ISVSEFFNEGRILITMHKHFIIVNIYAPYSGHNYERLYYKVRFFHAVRAKIIQLRIVTGL 228
Query: 69 PVILTGDLNCAHQEIDIY 86
P+IL GD N +++ DIY
Sbjct: 229 PIILLGDFNISYRNKDIY 246
Score = 62 (26.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 115 VDTFRAQHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKF 159
+DTF H V G +T W R N G R+DY + L + F
Sbjct: 609 IDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYIFMDYILYEHF 654
>UNIPROTKB|Q8ILF8 [details] [associations]
symbol:PF14_0285 "Exodeoxyribonuclease III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 102 (41.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 10 LGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK-ELEKKK 68
+ +S+ +EGR++ F +++ Y P SG RL Y++ + + ++ +
Sbjct: 169 ISVSEFFNEGRILITMHKHFIIVNIYAPYSGHNYERLYYKVRFFHAVRAKIIQLRIVTGL 228
Query: 69 PVILTGDLNCAHQEIDIY 86
P+IL GD N +++ DIY
Sbjct: 229 PIILLGDFNISYRNKDIY 246
Score = 62 (26.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 115 VDTFRAQHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKF 159
+DTF H V G +T W R N G R+DY + L + F
Sbjct: 609 IDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYIFMDYILYEHF 654
>CGD|CAL0001657 [details] [associations]
symbol:APN2 species:5476 "Candida albicans" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0034614 "cellular response to reactive oxygen
species" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 CGD:CAL0001657 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
KO:K10772 EMBL:AACQ01000244 EMBL:AACQ01000240 RefSeq:XP_710720.1
RefSeq:XP_710758.1 STRING:Q59LW6 GeneID:3647640 GeneID:3647674
KEGG:cal:CaO19.1836 KEGG:cal:CaO19.9394 Uniprot:Q59LW6
Length = 451
Score = 90 (36.7 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 116 DTFR-AQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVS-QSLADKFHDSYILPDVTGSDH 173
DT R Q R + YT W R+ N G R+D L S + + + ++ I P + GSDH
Sbjct: 323 DTTRLVQGRRMKMYTVWNTLTNARQINHGSRIDLILFSDEKMVQRISNADIWPFLMGSDH 382
Query: 174 SPI 176
P+
Sbjct: 383 CPV 385
Score = 67 (28.6 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 30/75 (40%), Positives = 39/75 (52%)
Query: 16 DSEGRLVTAEF-DSFFLLSCYVP-NSG---DG-LRRLSYRITEWDPSLSSYVKELEKKKP 69
DSEGR V E D+ + + Y P NS DG L RL++ I + VK +KK
Sbjct: 175 DSEGRCVCVELADNTVIFAVYCPANSQCTYDGELFRLTF-IKLLLQRCYNLVKLYPQKKI 233
Query: 70 VILTGDLNCAHQEID 84
VI+ GD+N A ID
Sbjct: 234 VIM-GDINIAIDMID 247
>TAIR|locus:2135164 [details] [associations]
symbol:AT4G36050 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR004808 InterPro:IPR010666
Pfam:PF06839 PROSITE:PS51435 Pfam:PF03372 EMBL:CP002687
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 KO:K10772
OMA:FIDSYRC IPI:IPI00517014 RefSeq:NP_974691.2 UniGene:At.22147
UniGene:At.74442 ProteinModelPortal:F4JNY0 SMR:F4JNY0 PRIDE:F4JNY0
EnsemblPlants:AT4G36050.2 GeneID:829761 KEGG:ath:AT4G36050
Uniprot:F4JNY0
Length = 610
Score = 109 (43.4 bits), Expect = 0.00098, P = 0.00098
Identities = 42/153 (27%), Positives = 67/153 (43%)
Query: 16 DSEGRLVTAEFDSFFLLSCYVPNS-GDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTG 74
D EGR V + F + + Y P + D R+ ++ + + L + + V + G
Sbjct: 134 DQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWECLLRQGRRVFVVG 193
Query: 75 DLNCAHQEIDIYNPAGNRRSAG--FTDEE-RQSFGANFLSKG--FVDTFRAQH-RGVVGY 128
DLN A +D R AG F E R+ F + + +G F D FR++H +
Sbjct: 194 DLNIAPFAMD-------RCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAF 246
Query: 129 TYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHD 161
T W G + N G R+D+ LV+ S + D
Sbjct: 247 TCWSSSSGAEQFNYGSRIDHILVAGSCLHQDED 279
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.140 0.432 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 182 182 0.00098 109 3 11 22 0.44 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 59
No. of states in DFA: 591 (63 KB)
Total size of DFA: 171 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.70u 0.09s 16.79t Elapsed: 00:00:01
Total cpu time: 16.71u 0.09s 16.80t Elapsed: 00:00:01
Start: Fri May 10 11:21:43 2013 End: Fri May 10 11:21:44 2013