BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048138
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 325 bits (832), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 147/182 (80%), Positives = 165/182 (90%)
Query: 1 IKPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSY 60
IKPLSV YG G+S HD+EGR+VTAEFDSF+L++ YVPNSGDGL+RLSYRI EWD +LS++
Sbjct: 355 IKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNH 414
Query: 61 VKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRA 120
+KELEK KPV+LTGDLNCAH+EIDI+NPAGN+RSAGFT EERQSFGAN L KGFVDTFR
Sbjct: 415 IKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKGFVDTFRK 474
Query: 121 QHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLIL 180
QH GVVGYTYWGYRHGGRKTN+GWRLDYFLVSQS+A HDSYILPD+ GSDH PIGLIL
Sbjct: 475 QHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHDSYILPDINGSDHCPIGLIL 534
Query: 181 KL 182
KL
Sbjct: 535 KL 536
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 133/182 (73%), Gaps = 3/182 (1%)
Query: 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYV 61
+PL V YG+G+ +HD EGR++T EF++ F+++ Y PNS GL R+ YR+ +W+ +L SY+
Sbjct: 73 EPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNSRRGLERIDYRM-QWEEALLSYI 131
Query: 62 KELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQ 121
EL++KKPVIL GDLN AHQEID+ NP NR +AGF+D+ER++F FL GFVD+FR
Sbjct: 132 LELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAF-TRFLEAGFVDSFRHV 190
Query: 122 HRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLIL 180
+ + G Y++W YR G R N GWR+DYF+VS+SL ++ D+ I DV GSDH P+ LI+
Sbjct: 191 YPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVMGSDHCPVELII 250
Query: 181 KL 182
+
Sbjct: 251 NI 252
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 196 bits (499), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 131/184 (71%), Gaps = 4/184 (2%)
Query: 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGD-GLRRLSYRITEWDPSLSSY 60
KP ++T+G+GI+ HD+EGR++T E+D F++++ Y+PN+G GL+RL YRI EWD +Y
Sbjct: 178 KPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAY 237
Query: 61 VKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRA 120
+++L KP+I GDLN AH EID+ NP N++SAGFT EER SF +NFL KG+VD++R
Sbjct: 238 LEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSF-SNFLEKGYVDSYRH 296
Query: 121 QHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDS-YILPDVTGSDHSPIGL 178
+ G G YT+W Y GGR N GWRLDYF+VS+ L D S + V GSDH PIG+
Sbjct: 297 FNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSVMGSDHCPIGV 356
Query: 179 ILKL 182
++ L
Sbjct: 357 VVDL 360
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 186 bits (473), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEF+SF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 138 PLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 196
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
+L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 197 DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRHLY 256
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 257 PNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 316
Query: 182 L 182
L
Sbjct: 317 L 317
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEF+SF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 138 PLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 196
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
+L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 197 DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 256
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 257 PNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 316
Query: 182 L 182
L
Sbjct: 317 L 317
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 118/182 (64%), Gaps = 3/182 (1%)
Query: 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYV 61
+PL+VTYG+G +HD EGR++TAEF FFL++ YVPN+ GL RL YR T WD +Y+
Sbjct: 131 EPLNVTYGIGKEEHDKEGRVITAEFPDFFLVTAYVPNASRGLVRLDYRKT-WDVDFRAYL 189
Query: 62 KELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQ 121
L+ +KP++L GDLN AHQEID+ NP GNR++AGFT EER+ F L GF D+FR
Sbjct: 190 CGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGF-TQLLEAGFTDSFREL 248
Query: 122 HRG-VVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLIL 180
+ YT+W Y R N GWRLDYF++S +L DS I GSDH PI L L
Sbjct: 249 YPDQAYAYTFWTYMMNARSKNVGWRLDYFVLSSALLPGLCDSKIRNTAMGSDHCPITLFL 308
Query: 181 KL 182
+
Sbjct: 309 AV 310
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes
GN=APEX1 PE=3 SV=1
Length = 318
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1
PE=1 SV=2
Length = 318
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 116/181 (64%), Gaps = 2/181 (1%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AE+D+F L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRHLY 257
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+SQS+ DS I GSDH PI L L
Sbjct: 258 PNTAYAYTFWTYMMNARSKNVGWRLDYFLLSQSVLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus
GN=APEX1 PE=3 SV=1
Length = 318
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRRFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLTALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla
gorilla GN=APEX1 PE=3 SV=1
Length = 318
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK 62
PL V+YG+G +HD EGR++ AEFDSF L++ YVPN+G GL RL YR WD + ++K
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYR-QRWDEAFRRFLK 197
Query: 63 ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQH 122
L +KP++L GDLN AH+EID+ NP GN+++AGFT +ERQ FG + D+FR +
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 123 RGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
YT+W Y R N GWRLDYFL+S SL DS I GSDH PI L L
Sbjct: 258 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317
Query: 182 L 182
L
Sbjct: 318 L 318
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 108/172 (62%), Gaps = 4/172 (2%)
Query: 13 SDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVIL 72
S D EGR++T EFD+FF+ Y PN+GDGL+RL R WD + Y+ EL+K+KPV+
Sbjct: 106 STMDLEGRIITLEFDAFFVTQVYTPNAGDGLKRLEERQV-WDAKYAEYLAELDKEKPVLA 164
Query: 73 TGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVG-YTYW 131
TGD N AH EID+ NPA NRRS GFTDEER F N L+ GF DTFR H V YT+W
Sbjct: 165 TGDYNVAHNEIDLANPASNRRSPGFTDEERAGF-TNLLATGFTDTFRHVHGDVPERYTWW 223
Query: 132 GYRHGGRKTNR-GWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182
R K N GWR+DY+L S +ADK S ++ DH+PI L + L
Sbjct: 224 AQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGARQDHTPIVLEIDL 275
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 108/172 (62%), Gaps = 4/172 (2%)
Query: 13 SDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVIL 72
S D EGR++T EFD+FF+ Y PN+GDGL+RL R WD + Y+ EL+K+KPV+
Sbjct: 106 STMDLEGRIITLEFDAFFVTQVYTPNAGDGLKRLEERQV-WDAKYAEYLAELDKEKPVLA 164
Query: 73 TGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVG-YTYW 131
TGD N AH EID+ NPA NRRS GFTDEER F N L+ GF DTFR H V YT+W
Sbjct: 165 TGDYNVAHNEIDLANPASNRRSPGFTDEERAGF-TNLLATGFTDTFRHVHGDVPERYTWW 223
Query: 132 GYRHGGRKTNR-GWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182
R K N GWR+DY+L S +ADK S ++ DH+PI L + L
Sbjct: 224 AQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGARQDHTPIVLEIDL 275
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 158 bits (399), Expect = 2e-38, Method: Composition-based stats.
Identities = 79/183 (43%), Positives = 107/183 (58%), Gaps = 3/183 (1%)
Query: 1 IKPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSY 60
I P+ V YG+G + D GR++TAE++ F+L++ YVPNSG L L R+ W+ +Y
Sbjct: 499 IMPIHVEYGIGNEEFDDVGRMITAEYEKFYLINVYVPNSGRKLVNLEPRM-RWEKLFQAY 557
Query: 61 VKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRA 120
VK+L+ KPV++ GD+N +H ID+ NP N ++AGFT EER L GFVDTFR
Sbjct: 558 VKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKM-TELLGLGFVDTFRH 616
Query: 121 QHRGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLI 179
+ G YT+W Y R N GWRLDY LVS+ K + I GSDH PI +
Sbjct: 617 LYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDHCPITIF 676
Query: 180 LKL 182
+
Sbjct: 677 FNI 679
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 16 DSEGRLVTAEFDSFFLLSCYVP-NSGDGLRRLSYRITEWDPSLSSYVKEL--EKKKPVIL 72
DSEGR + +F F L+ Y P NSG+ RL YR + +L ++ L E + +IL
Sbjct: 132 DSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAFYK-ALRERIERLIKEGNRKIIL 188
Query: 73 TGDLNCAHQEIDIYNPAGNRRSAGFTD--EERQ---SFGANFLSKGFVDTFRAQHRGVVG 127
GD+N ID + R + E RQ +D R QH G
Sbjct: 189 VGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLGLLLDIGRIQHPTRKG 248
Query: 128 -YTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILK 181
+T W R R TN G R+DY L + L D+ I+ +V GSDH P+ L LK
Sbjct: 249 MFTCWNTRLNTRPTNYGTRIDYTLATPDLLPWVQDADIMAEVMGSDHCPVYLDLK 303
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 25/189 (13%)
Query: 16 DSEGRLVTAEFD---------SFFLLSCYVPNSGDG-LRRLSYRITEWDPSLSSYVKELE 65
DSEGR + + + L++ Y P++ G RL++++ + L
Sbjct: 128 DSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQIRAEALLA 187
Query: 66 KKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSK----------GFV 115
VI+ GDLN AH+ ID ++ A N F ++ + + LS F+
Sbjct: 188 AGSHVIILGDLNTAHRPIDHWD-AVNMEC--FEEDPGRKWMDGLLSNLGCESGSHMGPFI 244
Query: 116 DTFRA-QHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDH 173
D++R Q + +T W G R N G RLDY L ++L D F S++LP+V GSDH
Sbjct: 245 DSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVLGDRTLVIDTFQSSFLLPEVMGSDH 304
Query: 174 SPIGLILKL 182
P+G +L +
Sbjct: 305 CPVGAVLSV 313
>sp|P09030|EX3_ECOLI Exodeoxyribonuclease III OS=Escherichia coli (strain K12) GN=xthA
PE=1 SV=4
Length = 268
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 18/191 (9%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDSFF----LLSCYVPNSGDGLRRLSYRI-TEWDPSL 57
P++V G D +++ R++ AE S +++ Y P + + ++ +L
Sbjct: 73 PIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNL 132
Query: 58 SSYVK-ELEKKKPVILTGDLNCAHQEIDIYNPAGNRR------SAGFTDEERQSFGANFL 110
+Y++ EL++ PV++ GD+N + ++DI NR+ F EER+ + +
Sbjct: 133 QNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEERE-WMDRLM 191
Query: 111 SKGFVDTFR-AQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVT 169
S G VDTFR A + ++++ YR G NRG R+D L SQ LA+ ++ I ++
Sbjct: 192 SWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIR 251
Query: 170 G----SDHSPI 176
SDH+P+
Sbjct: 252 SMEKPSDHAPV 262
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens
GN=APEX2 PE=1 SV=1
Length = 518
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 25/189 (13%)
Query: 16 DSEGRLVTAEFD---------SFFLLSCYVPNSGDG-LRRLSYRITEWDPSLSSYVKELE 65
DSEGR + + + L++ Y P++ G RL +++ + L
Sbjct: 128 DSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLA 187
Query: 66 KKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSK----------GFV 115
VI+ GDLN AH+ ID ++ A N F ++ + + + LS F+
Sbjct: 188 AGSHVIILGDLNTAHRPIDHWD-AVNLEC--FEEDPGRKWMDSLLSNLGCQSASHVGPFI 244
Query: 116 DTFRA-QHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDH 173
D++R Q + +T W G R N G RLDY L ++L D F S++LP+V GSDH
Sbjct: 245 DSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDH 304
Query: 174 SPIGLILKL 182
P+G +L +
Sbjct: 305 CPVGAVLSV 313
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus
GN=Apex2 PE=1 SV=1
Length = 516
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 16 DSEGRLVTAEFD---------SFFLLSCYVPNSGDG-LRRLSYRITEWDPSLSSYVKELE 65
DSEGR + + + L++ Y P++ G RL++++ + L
Sbjct: 127 DSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLA 186
Query: 66 KKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKG----------FV 115
VI+ GDLN AH+ ID + + F ++ + + LS F+
Sbjct: 187 AGSHVIILGDLNTAHRPIDHCDASSLE---CFEEDPGRKWMDGLLSNPGDEAGPHIGLFM 243
Query: 116 DTFRAQH-RGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLA-DKFHDSYILPDVTGSDH 173
D++R H + +T W G R N G RLDY L ++L D F S++LP+V GSDH
Sbjct: 244 DSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLGDRALVIDTFQASFLLPEVMGSDH 303
Query: 174 SPIGLILKL 182
P+G +L +
Sbjct: 304 CPVGAVLNV 312
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDS----FFLLSCYVPNSGDGLRRLSYRI-TEWDPSL 57
P+SV G +++ R++ AE S +++ Y P L + ++ +L
Sbjct: 73 PISVRRGFPDDGEEAQRRIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAKAQFYQNL 132
Query: 58 SSYVK-ELEKKKPVILTGDLNCAHQEIDIYNPAGNRR------SAGFTDEERQSFGANFL 110
+Y++ EL+ PV++ GD+N + ++DI NR+ F EER+ + + L
Sbjct: 133 QNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEERE-WMSRLL 191
Query: 111 SKGFVDTFR-AQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVT 169
G VDTFR A + + ++++ YR G NRG R+D L S LA++ ++ I D+
Sbjct: 192 KWGLVDTFRQANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYDIR 251
Query: 170 G----SDHSPI 176
SDH+P+
Sbjct: 252 SMEKPSDHAPV 262
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 3 PLSVTYGLGISDHDSEGRLVTAEFDS----FFLLSCYVPNSGDGLRRLSYRI-TEWDPSL 57
P+SV G +++ R++ AE S +++ Y P L + ++ +L
Sbjct: 73 PISVRRGFPDDGEEAQRRIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAKAQFYQNL 132
Query: 58 SSYVK-ELEKKKPVILTGDLNCAHQEIDIYNPAGNRR------SAGFTDEERQSFGANFL 110
+Y++ EL+ PV++ GD+N + ++DI NR+ F EER+ + + L
Sbjct: 133 QNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEERE-WMSRLL 191
Query: 111 SKGFVDTFR-AQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVT 169
G VDTFR A + + ++++ YR G NRG R+D L S LA++ ++ I D+
Sbjct: 192 KWGLVDTFRQANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYDIR 251
Query: 170 G----SDHSPI 176
SDH+P+
Sbjct: 252 SMEKPSDHAPV 262
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFF----LLSCYVPNSGDGLRRLSYRITE-WDPS 56
+P + G + D++ R++ A+ ++ F +++ Y P + E +
Sbjct: 72 EPKVIRRGFPTDNEDAQKRIIMADLETEFGLLTVINGYFPQGESRAHETKFPAKEKFYAD 131
Query: 57 LSSYV-KELEKKKPVILTGDLNCAHQEIDIYNPAGNRR------SAGFTDEERQSFGANF 109
L Y+ KE +K P+++ GD+N + ++DI NR+ F EER ++
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEER-AWYQRL 190
Query: 110 LSKGFVDTFRAQHRGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDV 168
G D+FR + ++++ YR G NRG R+D+ LVSQ LA++ D I D+
Sbjct: 191 YDYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDI 250
Query: 169 TG----SDHSPI 176
SDH+PI
Sbjct: 251 RAMEKPSDHAPI 262
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 82/199 (41%), Gaps = 40/199 (20%)
Query: 16 DSEGRLVTAEFDS-FFLLSCYVP-NSGDGLRRLSYRITEWDPSLSSYVKELEK-KKPVIL 72
DSEGR V E ++S Y P NS +R+ + L V+ L+K K ++L
Sbjct: 161 DSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRL-RFLKVLLRRVRNLDKIGKKIVL 219
Query: 73 TGDLNCAHQEID-----------IYNPAG-NRRSAGFTDEERQSFGAN-------FLSKG 113
GD+N ID I +P G + A + D+ Q F N ++
Sbjct: 220 MGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQ-FIINPDTPHRRIFNQI 278
Query: 114 FVDTF--RAQHRGVV--------------GYTYWGYRHGGRKTNRGWRLDYFLVSQSLAD 157
D+ A RG++ YT W R +N G R+D+ LVS L
Sbjct: 279 LADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFILVSLKLER 338
Query: 158 KFHDSYILPDVTGSDHSPI 176
+ ILPD+ GSDH P+
Sbjct: 339 CIKAADILPDILGSDHCPV 357
>sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis
PE=4 SV=1
Length = 1308
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 18/155 (11%)
Query: 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYN 87
++ L++ Y P +G R SLS+Y++ ++ + +I+ GD N D
Sbjct: 103 TYNLMNVYAPTTGPERARFF-------ESLSAYMETIDSDEALIIGGDFNYTLDARDRNV 155
Query: 88 PAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLD 147
P S E A+F VD +R Q+ V +TY R G + R+D
Sbjct: 156 PKKRDSSESVLRE----LIAHF---SLVDVWREQNPETVAFTYVRVRDGHVSQS---RID 205
Query: 148 YFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182
+S L + S I SDH+ + L + +
Sbjct: 206 RIYISSHLMSRAQSSTIR-LAPFSDHNCVSLRMSI 239
>sp|O62653|SUIS_SUNMU Sucrase-isomaltase, intestinal OS=Suncus murinus GN=SI PE=2 SV=3
Length = 1813
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 129 TYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILP------DVTGSDHSPIGLILKL 182
T++ Y GG++T R R++ +L + YI+P + T S +P+GLI+ L
Sbjct: 747 TWYDYETGGKRTWRKQRVEMYLPGDKIGLHVRGGYIIPTQQPAVNTTASRKNPLGLIIAL 806
>sp|A4SKE9|MAO1_AERS4 NAD-dependent malic enzyme OS=Aeromonas salmonicida (strain A449)
GN=maeA PE=3 SV=1
Length = 564
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 11 GISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSY---RITEWDPSLS-SYVKELEK 66
G++D + GR+ D F L++ +PN D RRLS RI +W + S ++ +E
Sbjct: 322 GLTDAQARGRVFMV--DRFGLITDKIPNQLDFQRRLSQPVGRIADWPVGDNISLLEVMEH 379
Query: 67 KKPVILTG 74
+P IL G
Sbjct: 380 GRPDILIG 387
>sp|Q8K209|GPR56_MOUSE G-protein coupled receptor 56 OS=Mus musculus GN=Gpr56 PE=2 SV=1
Length = 687
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 74 GDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGY 133
G N Q Y+ + + EE + A FL+ + F + RG+ + +
Sbjct: 36 GQRNQTQQSTLHYDQSSEPHIFVWNTEETLTIRAPFLAAPDIPRFFPEPRGLYHFCLYWS 95
Query: 134 RHGGRKTNRGWRLDYFLVSQS 154
RH GR R + DY L SQ+
Sbjct: 96 RHTGRLHLRYGKHDYLLSSQA 116
>sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 OS=Homo sapiens GN=TCF20 PE=1 SV=3
Length = 1960
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 88 PAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGG 137
P+G +S G + SFG + S+G V F+AQH G+ G +++ + G
Sbjct: 111 PSGPVQSYG--PPQGSSFGNQYGSEGHVGQFQAQHSGLGGVSHYQQDYTG 158
>sp|Q5UPS2|YL783_MIMIV Putative BTB/POZ domain and WD-repeat protein R783 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L783 PE=3 SV=1
Length = 527
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 22 VTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVI 71
V F+ F CY+P++ + SY I WD S + +K ++K K I
Sbjct: 273 VKTRFEHF----CYLPSNNHLISTSSYNIYVWDLSTNKLIKTVKKHKNTI 318
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,268,324
Number of Sequences: 539616
Number of extensions: 3223073
Number of successful extensions: 5846
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5778
Number of HSP's gapped (non-prelim): 31
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)