Query 048138
Match_columns 182
No_of_seqs 136 out of 1351
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:38:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 1.6E-42 3.4E-47 262.7 14.6 179 2-182 73-261 (261)
2 PRK13911 exodeoxyribonuclease 100.0 7.1E-40 1.5E-44 251.4 18.7 177 2-180 72-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 9.1E-33 2E-37 214.7 17.0 178 3-182 73-268 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 2E-32 4.4E-37 211.3 18.2 177 2-180 72-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 4.5E-29 9.7E-34 192.3 18.9 176 4-181 77-255 (255)
6 KOG1294 Apurinic/apyrimidinic 99.8 3.1E-20 6.7E-25 146.4 14.1 182 1-182 139-335 (335)
7 PF14529 Exo_endo_phos_2: Endo 99.7 3.5E-17 7.6E-22 111.9 7.9 119 29-177 1-119 (119)
8 COG3568 ElsH Metal-dependent h 99.6 5.4E-15 1.2E-19 112.5 11.6 130 18-182 118-257 (259)
9 PRK05421 hypothetical protein; 99.5 5.7E-13 1.2E-17 103.4 11.6 113 28-182 149-261 (263)
10 PRK15251 cytolethal distending 99.4 1.2E-11 2.6E-16 95.0 12.7 66 10-82 134-199 (271)
11 TIGR03395 sphingomy sphingomye 99.3 4.4E-11 9.5E-16 93.7 12.8 137 18-179 120-282 (283)
12 COG3021 Uncharacterized protei 99.3 4.8E-11 1E-15 92.7 9.8 130 16-181 173-306 (309)
13 PTZ00297 pantothenate kinase; 99.2 2.6E-10 5.7E-15 105.2 14.1 139 28-182 151-314 (1452)
14 PLN03144 Carbon catabolite rep 99.2 2E-10 4.4E-15 97.4 9.7 51 29-83 419-471 (606)
15 PF03372 Exo_endo_phos: Endonu 99.1 5.7E-11 1.2E-15 89.5 5.2 48 28-82 121-171 (249)
16 KOG3873 Sphingomyelinase famil 99.0 9.3E-10 2E-14 86.5 8.0 131 28-182 129-292 (422)
17 KOG2756 Predicted Mg2+-depende 98.7 4.7E-08 1E-12 74.4 6.7 127 28-181 205-348 (349)
18 smart00476 DNaseIc deoxyribonu 98.6 2E-07 4.4E-12 72.6 7.0 48 28-81 143-190 (276)
19 smart00128 IPPc Inositol polyp 98.5 2.1E-06 4.5E-11 68.3 11.2 73 5-81 114-195 (310)
20 COG2374 Predicted extracellula 98.1 1.6E-05 3.4E-10 68.4 9.1 127 27-182 621-788 (798)
21 KOG2338 Transcriptional effect 98.0 2.7E-05 5.8E-10 64.2 8.0 62 18-83 236-308 (495)
22 COG5411 Phosphatidylinositol 5 97.6 0.00021 4.5E-09 58.3 6.5 36 146-182 291-326 (460)
23 PLN03191 Type I inositol-1,4,5 97.6 0.00072 1.6E-08 57.6 9.6 37 144-182 555-591 (621)
24 COG5239 CCR4 mRNA deadenylase, 97.4 0.00094 2E-08 53.3 7.3 49 126-181 303-364 (378)
25 KOG0620 Glucose-repressible al 97.3 0.00036 7.9E-09 56.5 5.0 17 67-83 221-237 (361)
26 KOG0566 Inositol-1,4,5-triphos 97.3 0.0017 3.7E-08 57.6 9.1 66 6-79 650-726 (1080)
27 KOG1294 Apurinic/apyrimidinic 97.3 0.0016 3.5E-08 52.2 8.1 151 15-180 9-162 (335)
28 PTZ00312 inositol-1,4,5-tripho 92.8 0.79 1.7E-05 36.2 7.6 55 28-82 81-143 (356)
29 KOG1976 Inositol polyphosphate 68.7 12 0.00025 30.0 4.6 37 145-181 341-387 (391)
30 KOG2268 Serine/threonine prote 44.5 22 0.00048 29.3 2.7 59 7-78 169-230 (465)
31 PRK09716 hypothetical protein; 39.7 35 0.00076 26.2 3.0 22 56-77 48-69 (395)
32 KOG1387 Glycosyltransferase [C 37.4 48 0.001 27.3 3.5 48 28-82 45-92 (465)
33 cd07391 MPP_PF1019 Pyrococcus 29.3 79 0.0017 22.5 3.4 21 55-76 31-51 (172)
34 PF09949 DUF2183: Uncharacteri 27.8 93 0.002 20.4 3.2 19 56-75 54-72 (100)
35 KOG0373 Serine/threonine speci 27.8 72 0.0016 24.5 2.9 26 52-78 57-84 (306)
36 TIGR00375 conserved hypothetic 27.6 70 0.0015 26.4 3.1 42 28-80 3-44 (374)
37 KOG2126 Glycosylphosphatidylin 27.0 1.1E+02 0.0024 28.2 4.3 34 43-76 228-261 (895)
38 PF15569 Imm21: Immunity prote 26.5 77 0.0017 20.5 2.5 23 57-79 17-39 (91)
39 TIGR00824 EIIA-man PTS system, 25.2 1.2E+02 0.0025 20.3 3.4 26 52-77 43-68 (116)
40 PF12850 Metallophos_2: Calcin 23.9 84 0.0018 21.4 2.7 16 61-76 20-35 (156)
41 cd07390 MPP_AQ1575 Aquifex aeo 23.8 1.1E+02 0.0023 21.8 3.2 22 57-78 32-54 (168)
42 PF11288 DUF3089: Protein of u 23.7 94 0.002 23.4 2.9 21 55-75 82-102 (207)
43 cd02859 AMPKbeta_GBD_like AMP- 23.4 46 0.001 20.5 1.1 14 66-79 11-24 (79)
44 PF04042 DNA_pol_E_B: DNA poly 22.8 78 0.0017 23.2 2.4 27 55-81 17-46 (209)
45 cd00844 MPP_Dbr1_N Dbr1 RNA la 22.3 1.1E+02 0.0023 23.9 3.1 14 66-79 28-41 (262)
46 cd07393 MPP_DR1119 Deinococcus 22.3 1.1E+02 0.0023 23.1 3.1 23 55-77 29-52 (232)
47 cd00841 MPP_YfcE Escherichia c 22.3 91 0.002 21.5 2.6 13 67-79 25-37 (155)
48 cd02068 radical_SAM_B12_BD B12 22.2 2.3E+02 0.0051 18.8 4.5 21 56-76 57-77 (127)
49 PRK04011 peptide chain release 21.8 2.3E+02 0.0051 23.7 5.2 15 28-42 26-40 (411)
50 cd08164 MPP_Ted1 Saccharomyces 21.6 1.3E+02 0.0029 22.3 3.4 26 52-77 30-55 (193)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-42 Score=262.67 Aligned_cols=179 Identities=45% Similarity=0.799 Sum_probs=163.5
Q ss_pred CCceeeeCCCC-CCCCCCCCEEEEEeCcEEEEEEEeeCCCC-CccchhhHHHHHHHHHHHHHHHh-cCCCCEEEEccCCc
Q 048138 2 KPLSVTYGLGI-SDHDSEGRLVTAEFDSFFLLSCYVPNSGD-GLRRLSYRITEWDPSLSSYVKEL-EKKKPVILTGDLNC 78 (182)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~gR~i~~~~~~~~i~nvy~p~~~~-~~~~~~~k~~~~~~~l~~~l~~~-~~~~~~Ii~GDFN~ 78 (182)
+|.+|.+||+. ...|.+||+|.++++.+.|+|+|+|++.. +.+++.+|+ +|++.+..++.++ ..+.++|+|||||.
T Consensus 73 ~~~~v~~g~~~~~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~yKl-~f~~~l~~~l~~l~~~~~~~vl~GD~NI 151 (261)
T COG0708 73 PPDDVRRGFPGEEEDDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFDYKL-RFLDALRNYLEELLKKGKPVVLCGDFNI 151 (261)
T ss_pred CchhhhcCCCCCccccccCcEEEEEECCEEEEEEEcCCCCCCCCcchHHHH-HHHHHHHHHHHHHhhcCCCEEEeccccc
Confidence 67789999998 45788999999999999999999999998 788899999 9999999999996 45799999999999
Q ss_pred cCCCccccCCC---CCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhh
Q 048138 79 AHQEIDIYNPA---GNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSL 155 (182)
Q Consensus 79 ~~~~~d~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~ 155 (182)
+|.+.|..+++ .+.+.+++.++||+++. .|.+.||+|++|.++|+...||||+++.+.+..+.|+||||+++|+.+
T Consensus 152 ap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~-~ll~~G~~D~~R~~~p~~~~YTwW~YR~~~~~~n~G~RID~~l~S~~L 230 (261)
T COG0708 152 APEEIDVANPKKRWLNEGNSGFLPEERAWFR-RLLNAGFVDTFRLFHPEPEKYTWWDYRANAARRNRGWRIDYILVSPAL 230 (261)
T ss_pred CCchhcccCchhhhhcCCCCCCCHHHHHHHH-HHHHcchhhhhHhhCCCCCcccccccccchhhhcCceeEEEEEeCHHH
Confidence 99999999995 45788999999999998 577899999999999998889999999998877899999999999999
Q ss_pred hcccccceecCCCCC----CCccceEEEEeC
Q 048138 156 ADKFHDSYILPDVTG----SDHSPIGLILKL 182 (182)
Q Consensus 156 ~~~~~~~~i~~~~~~----SDH~pv~~~l~l 182 (182)
..++++|.|..+.+. |||+||.++|++
T Consensus 231 ~~~~~~a~I~~~~rg~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 231 ADRLKDAGIDREVRGWEKPSDHAPVWVELDL 261 (261)
T ss_pred HHHHHhcCccHHHhcCCCCCCcCcEEEEecC
Confidence 999999999987665 999999999975
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=7.1e-40 Score=251.37 Aligned_cols=177 Identities=51% Similarity=0.964 Sum_probs=160.2
Q ss_pred CCceeeeCCCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCC
Q 048138 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQ 81 (182)
Q Consensus 2 ~~~~~~~~~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~ 81 (182)
+|+.+.+|++....|.|||+|.++++.++|+|+|+|++..+.+++.+|+ +|++.+.++++++..+.++|+|||||.++.
T Consensus 72 ~~~~v~~~~~~~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~~~~r~~~K~-~~~~~~~~~l~~l~~~~~~Ii~GD~Nva~~ 150 (250)
T PRK13911 72 EPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRM-SWEVEFKKFLKALELKKPVIVCGDLNVAHN 150 (250)
T ss_pred CchheEEcCCCCcccccCCEEEEEECCEEEEEEEecCCCCCCcchHHHH-HHHHHHHHHHHhcccCCCEEEEccccCCCC
Confidence 5788999998888899999999999999999999999988778999998 999999999998766789999999999999
Q ss_pred CccccCCCCCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCC-CCccccCCCCCCcCCCCcceeeEEEEChhhhcccc
Q 048138 82 EIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFH 160 (182)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~-~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~ 160 (182)
+.|..++..+.+.++++++||+++.+++ +.||+|+||.++|.. ..||||+++.+++..+.++||||||+|+.+...+.
T Consensus 151 ~~D~~~~~~~~~~~gf~~~er~~f~~~l-~~gl~D~~R~~~p~~~~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~~~~ 229 (250)
T PRK13911 151 EIDLENPKTNRKNAGFSDEERGKFSELL-NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLK 229 (250)
T ss_pred hhhccChhhcCCCCCcCHHHHHHHHHHH-hcCCeehhhhhCCCCCCCCccCCCcCCccccCCcceEEEEEEChHHhhhEE
Confidence 9999988877778899999999998645 579999999999984 67999999988887889999999999999998899
Q ss_pred cceecCCCCCCCccceEEEE
Q 048138 161 DSYILPDVTGSDHSPIGLIL 180 (182)
Q Consensus 161 ~~~i~~~~~~SDH~pv~~~l 180 (182)
++.+......|||+||.++|
T Consensus 230 ~~~i~~~~~~SDH~Pv~~~~ 249 (250)
T PRK13911 230 DALIYKDILGSDHCPVGLEL 249 (250)
T ss_pred EEEECCCCCCCCcccEEEEe
Confidence 99888877789999999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=9.1e-33 Score=214.75 Aligned_cols=178 Identities=27% Similarity=0.504 Sum_probs=141.6
Q ss_pred CceeeeCCCCCCCCCCCCEEEEEeC----cEEEEEEEeeCCCCC--ccchhhHHHHHHHHHHHHHHHh-cCCCCEEEEcc
Q 048138 3 PLSVTYGLGISDHDSEGRLVTAEFD----SFFLLSCYVPNSGDG--LRRLSYRITEWDPSLSSYVKEL-EKKKPVILTGD 75 (182)
Q Consensus 3 ~~~~~~~~~~~~~~~~gR~i~~~~~----~~~i~nvy~p~~~~~--~~~~~~k~~~~~~~l~~~l~~~-~~~~~~Ii~GD 75 (182)
|..+..+++....+.++|+|.+++. .+.++|+|+|++... ..+..+|+ +|.+.|.+++.++ +.+.|+|+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~-~~~~~l~~~l~~~~~~~~pvIl~GD 151 (268)
T PRK11756 73 PIAVRKGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKR-QFYQDLQNYLETELSPDNPLLIMGD 151 (268)
T ss_pred hHHeEECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHH-HHHHHHHHHHHHHhccCCCEEEEee
Confidence 3455666666556678999999883 699999999987642 23444565 7888888888774 56789999999
Q ss_pred CCccCCCccccCCCCC------CCCCCCCHHHHHHHHHhhhhCCceeceeccCCC-CCCccccCCCCCCcCCCCcceeeE
Q 048138 76 LNCAHQEIDIYNPAGN------RRSAGFTDEERQSFGANFLSKGFVDTFRAQHRG-VVGYTYWGYRHGGRKTNRGWRLDY 148 (182)
Q Consensus 76 FN~~~~~~d~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~-~~~~T~~~~~~~~~~~~~~~rID~ 148 (182)
||+.+.+.|...+..+ .+.+++.++||+++. .+.+.||+|+||.++|. ...||||+++...+..+.++||||
T Consensus 152 fN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~-~l~~~~l~D~~R~~~p~~~~~~T~~~~~~~~~~~~~g~RIDy 230 (268)
T PRK11756 152 MNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLD-RLMDWGLVDTFRQLNPDVNDRFSWFDYRSKGFDDNRGLRIDL 230 (268)
T ss_pred cccCCChhhcCCcccChHHhcccCCccCCHHHHHHHH-HHHhCCcEeehhhhCCCCCCcccCcCCcccccccCCceEEEE
Confidence 9999988887543222 234678889999887 46678999999999997 578999999887776678899999
Q ss_pred EEEChhhhcccccceecCCC----CCCCccceEEEEeC
Q 048138 149 FLVSQSLADKFHDSYILPDV----TGSDHSPIGLILKL 182 (182)
Q Consensus 149 i~~s~~~~~~~~~~~i~~~~----~~SDH~pv~~~l~l 182 (182)
||+|+.+..++.+|.|..+. .+|||+||+++|+|
T Consensus 231 i~~s~~~~~~v~~~~i~~~~~~~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 231 ILATQPLAERCVETGIDYDIRGMEKPSDHAPIWATFKL 268 (268)
T ss_pred EEeCHHHHhhheEeEEeHHHhCCCCCCCcccEEEEEeC
Confidence 99999998889999987543 47999999999986
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=2e-32 Score=211.27 Aligned_cols=177 Identities=43% Similarity=0.821 Sum_probs=147.0
Q ss_pred CCceeeeCCCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCC-CccchhhHHHHHHHHHHHHHHHh-cCCCCEEEEccCCcc
Q 048138 2 KPLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGD-GLRRLSYRITEWDPSLSSYVKEL-EKKKPVILTGDLNCA 79 (182)
Q Consensus 2 ~~~~~~~~~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~-~~~~~~~k~~~~~~~l~~~l~~~-~~~~~~Ii~GDFN~~ 79 (182)
.|+++..+++...++.+||++.++++++.|+|+|+|+++. ..++..+|. +|++.|.++++++ ..+.|+|+|||||+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~~~~~~~~r~-~~~~~l~~~~~~~~~~~~pvIi~GDfN~~ 150 (254)
T TIGR00195 72 EPLSVRRGFGVEEEDAEGRIIMAEFDSFLVINGYFPNGSRDDSEKLPYKL-QWLEALQNYLEKLVDKDKPVLICGDMNIA 150 (254)
T ss_pred CcceEEECCCCcccccCCCEEEEEECCEEEEEEEccCCCCCCCccHHHHH-HHHHHHHHHHHHHHhcCCcEEEEeecccC
Confidence 4677888888777888999999999999999999999654 345667776 8888899999886 356899999999999
Q ss_pred CCCccccCCCCCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhccc
Q 048138 80 HQEIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKF 159 (182)
Q Consensus 80 ~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~ 159 (182)
+.+.|..++.......++.++++..+.. +.+.+|+|+||..+|....||||+.+...+..+.+.||||||+|+.+..++
T Consensus 151 ~~~~d~~~~~~~~~~~~~~~~e~~~~~~-l~~~~l~D~~r~~~~~~~~~T~~~~~~~~~~~~~g~RID~i~~s~~~~~~v 229 (254)
T TIGR00195 151 PTEIDLHSPDENRNHTGFLPEEREWLDR-LLEAGLVDTFRKFNPDEGAYSWWDYRTKARDRNRGWRIDYFLVSEPLKERC 229 (254)
T ss_pred CChhhccChhhcCCCcCcChHHHHHHHH-HHHcCCEeeecccCCCCCCCcccCCcCCccccCCceEEEEEEECHHHHhhh
Confidence 9988887666666667888889988875 446789999999999888899999877655556788999999999998889
Q ss_pred ccceecCC----CCCCCccceEEEE
Q 048138 160 HDSYILPD----VTGSDHSPIGLIL 180 (182)
Q Consensus 160 ~~~~i~~~----~~~SDH~pv~~~l 180 (182)
.++.|... ..+|||+||.++|
T Consensus 230 ~~~~i~~~~~~~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 230 VDCGIDYDIRGSEKPSDHCPVVLEF 254 (254)
T ss_pred hEEEEcHHHhcCCCCCCcccEEEeC
Confidence 99998763 2469999999875
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=4.5e-29 Score=192.31 Aligned_cols=176 Identities=51% Similarity=0.924 Sum_probs=136.7
Q ss_pred ceeeeCCCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCC-CccchhhHHHHHHHHHHHHHHH-hcCCCCEEEEccCCccCC
Q 048138 4 LSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGD-GLRRLSYRITEWDPSLSSYVKE-LEKKKPVILTGDLNCAHQ 81 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~-~~~~~~~k~~~~~~~l~~~l~~-~~~~~~~Ii~GDFN~~~~ 81 (182)
..+.++++....+.+||+|.++++++.|+++|+|++.. +.++..+|. ++++.+.+.+.+ +..+.++|+|||||+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~~~~~~~r~-~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 77 LDVRYGFGGEEHDEEGRVITAEFDGFTVVNVYVPNGGSRGLERLEYKL-QFWDALFQYYEKELDAGKPVIICGDMNVAHT 155 (255)
T ss_pred ceEEECCCCCcccCCCcEEEEEECCEEEEEEEccCCCCCCchhHHHHH-HHHHHHHHHHHHHHhcCCcEEEEeecccCCC
Confidence 35556667777788999999999999999999998773 334455565 566666666554 346789999999999988
Q ss_pred CccccCCCCCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCC-CCccccCCCCCCcCCCCcceeeEEEEChhhhcccc
Q 048138 82 EIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFH 160 (182)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~-~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~ 160 (182)
..|..++..+.+..++.++++..+.+++ +.||.|+|+..+|.. ..|||++.+....+.+.+.||||||+++.+...+.
T Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~ 234 (255)
T TIGR00633 156 EIDLGNPKENKGNAGFTPEEREWFDELL-EAGLVDTFRHFNPDTEGAYTWWDYRSGARDRNRGWRIDYFLVSEPLAERVV 234 (255)
T ss_pred hHHccChhhcCCCCCcCHHHHHHHHHHH-HcCCEecchhhCCCCCCcCcCcCCccCccccCCceEEEEEEECHHHHhhhc
Confidence 7777665555555667777777787544 589999999998876 48999988765555556789999999999987788
Q ss_pred cceecCCCCCCCccceEEEEe
Q 048138 161 DSYILPDVTGSDHSPIGLILK 181 (182)
Q Consensus 161 ~~~i~~~~~~SDH~pv~~~l~ 181 (182)
++.+......|||+||.++|+
T Consensus 235 ~~~i~~~~~~SDH~pv~~~~~ 255 (255)
T TIGR00633 235 DSYIDSEIRGSDHCPIVLELD 255 (255)
T ss_pred EeEECCCCCCCCcccEEEEEC
Confidence 888876556799999999874
No 6
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.85 E-value=3.1e-20 Score=146.35 Aligned_cols=182 Identities=47% Similarity=0.814 Sum_probs=147.7
Q ss_pred CCCceeeeCCC--CCCCCCCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHH-HHHHHHHHHHHHHhcC----CCCEEEE
Q 048138 1 IKPLSVTYGLG--ISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRI-TEWDPSLSSYVKELEK----KKPVILT 73 (182)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~-~~~~~~l~~~l~~~~~----~~~~Ii~ 73 (182)
.+|+.+++|++ .+.+++.||+|.+++....++|.|.|+...+.....++. ..|...+...+.+... ..+++++
T Consensus 139 ~~p~~v~~~~~~~~s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~ 218 (335)
T KOG1294|consen 139 FKPLKVHYGFGAMGSDHRPVGRVIIAEFEIFILINTYVPNIGGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVIC 218 (335)
T ss_pred cccceeeecccccCCccCccceEEEEeecceeeccccCcccccccchhhhhhhhhhHHHHHHHhhhccccccccCcceec
Confidence 37999999999 889999999999999999999999999877644444442 2555556666666432 2489999
Q ss_pred ccCCccCCCccc----cCCCCCC-CCCCCCHHHHHHHHHhhhhCC-ceeceeccCCCCC-CccccCCCCCCcCCCCccee
Q 048138 74 GDLNCAHQEIDI----YNPAGNR-RSAGFTDEERQSFGANFLSKG-FVDTFRAQHRGVV-GYTYWGYRHGGRKTNRGWRL 146 (182)
Q Consensus 74 GDFN~~~~~~d~----~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-l~D~~~~~~~~~~-~~T~~~~~~~~~~~~~~~rI 146 (182)
||.|..+...+. .++..+. ..+++.+++|.++...+.+.+ ++|+|+..+++.. .+|+|.+......++.+.|+
T Consensus 219 gd~nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~ 298 (335)
T KOG1294|consen 219 GDLNVSHEEIDPSKPLVSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERC 298 (335)
T ss_pred cccccchhhccccccccccccCCcCCCCCCHHHhhhHHHhhccCCcceeehhhhcCCccccccchhhccccccCCCCCce
Confidence 999999887773 3344443 567899999999832455566 9999999999886 89999998877777888999
Q ss_pred eEEEEChhhhcccccceecCC-CCCCCccceEEEEeC
Q 048138 147 DYFLVSQSLADKFHDSYILPD-VTGSDHSPIGLILKL 182 (182)
Q Consensus 147 D~i~~s~~~~~~~~~~~i~~~-~~~SDH~pv~~~l~l 182 (182)
||++|++.......+++|... ...|||+|+++.|.+
T Consensus 299 dy~~Vsk~~~n~~r~~~Ic~r~~~gsdh~pi~~~~~~ 335 (335)
T KOG1294|consen 299 DYILVSKPGPNNGRRFYICSRPIHGSDHCPITLEFFL 335 (335)
T ss_pred eEEEecCcCCCCCceeeeecCccCCCCCCCeeeeecC
Confidence 999999999989999999988 789999999999864
No 7
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.71 E-value=3.5e-17 Score=111.89 Aligned_cols=119 Identities=30% Similarity=0.393 Sum_probs=66.2
Q ss_pred EEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHHHHHHh
Q 048138 29 FFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGAN 108 (182)
Q Consensus 29 ~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~ 108 (182)
++|+|||+|+.. . + ..|.+.|.+.++..... ++||+||||+....++... ........+.+.
T Consensus 1 i~i~~vY~pp~~-~------~-~~~~~~l~~~~~~~~~~-~~Ii~GDFN~~~~~w~~~~---------~~~~~~~~l~~~ 62 (119)
T PF14529_consen 1 ITIISVYAPPSS-E------R-EEFFDQLRQLLKNLPPA-PIIIGGDFNAHHPNWDSSN---------TNSRRGEQLLDW 62 (119)
T ss_dssp EEEEEEE--TTS--------C-HHHHHHHHHHHHCCTTS-SEEEEEE-----GGGT-SC---------HHHHHHHHHHHH
T ss_pred CEEEEEECCCCc-c------H-HHHHHHHHHHHHhCCCC-CEEEEeECCCCchhhhhcc---------ccchhHHHHHHH
Confidence 689999999877 1 1 16667788877764333 9999999999655432210 000233456667
Q ss_pred hhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCCCCCCccceE
Q 048138 109 FLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIG 177 (182)
Q Consensus 109 l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~~~SDH~pv~ 177 (182)
+.+.++.+. ++....+||.+.+. .++||++|+++.+... ..+.+......|||+||+
T Consensus 63 ~~~~~l~~~----~~~~~~~T~~~~~~-------~s~iD~~~~s~~~~~~-~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 63 LDSHNLVDL----NPPGRPPTFISNSH-------GSRIDLILTSDNLLSW-CVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp HHHCTEEE-------TT---SEEECCC-------EE--EEEEEECCGCCC-EEEEEETTSSSSSB--EE
T ss_pred hhhceeeee----ecCCCCCcccCCCC-------CceEEEEEECChHHhc-CcEEEeCCCCCCCccCCC
Confidence 888888877 23234588877654 2599999999998654 233444445689999985
No 8
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.62 E-value=5.4e-15 Score=112.50 Aligned_cols=130 Identities=20% Similarity=0.248 Sum_probs=76.4
Q ss_pred CCCEEEEEe-----CcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHH--HhcCCCCEEEEccCCccCCCccccCCCC
Q 048138 18 EGRLVTAEF-----DSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK--ELEKKKPVILTGDLNCAHQEIDIYNPAG 90 (182)
Q Consensus 18 ~gR~i~~~~-----~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~--~~~~~~~~Ii~GDFN~~~~~~d~~~~~~ 90 (182)
+++++.+++ +++.|+|+|+- -... .|+ +++...++ .+++.+|+|+|||||+.+.+.+..-...
T Consensus 118 ~Rgal~a~~~~~~g~~l~V~~~HL~-l~~~-----~R~----~Q~~~L~~~~~l~~~~p~vl~GDFN~~p~s~~yr~~~~ 187 (259)
T COG3568 118 PRGALLAEIELPGGKPLRVINAHLG-LSEE-----SRL----RQAAALLALAGLPALNPTVLMGDFNNEPGSAEYRLAAR 187 (259)
T ss_pred CceeEEEEEEcCCCCEEEEEEEecc-ccHH-----HHH----HHHHHHHhhccCcccCceEEEccCCCCCCCccceeccC
Confidence 556777765 28999999997 2221 111 22233333 2445569999999999987654311000
Q ss_pred CCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCC--
Q 048138 91 NRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDV-- 168 (182)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~-- 168 (182)
..+. ...++.+.+....+.. .-||.++.+. .+|||||+|+.+ .+..+.+..+.
T Consensus 188 ------------~~~~---~~~~~~~~~~~a~~~~-~~tfps~~p~-------lriD~Ifvs~~~--~i~~~~v~~~~~a 242 (259)
T COG3568 188 ------------SPLN---AQAALTGAFAPAVGRT-IRTFPSNTPL-------LRLDRIFVSKEL--AIRSVHVLTDRLA 242 (259)
T ss_pred ------------Cchh---hccccccccCcccCcc-cCCCCCCCcc-------ccccEEEecCcc--cEEEEEeecCCCc
Confidence 0011 1223334433322211 2366555432 499999999988 46666666553
Q ss_pred -CCCCccceEEEEeC
Q 048138 169 -TGSDHSPIGLILKL 182 (182)
Q Consensus 169 -~~SDH~pv~~~l~l 182 (182)
..|||+||.++|.+
T Consensus 243 ~~aSDHlPl~aeL~~ 257 (259)
T COG3568 243 RVASDHLPLLAELRL 257 (259)
T ss_pred cccccccceEEEEec
Confidence 37999999999875
No 9
>PRK05421 hypothetical protein; Provisional
Probab=99.48 E-value=5.7e-13 Score=103.43 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=66.1
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHHHHHH
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGA 107 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 107 (182)
.+.|+|+|+++...+.+. +. ..++.+.+.+.. ...|+|+|||||+..... ...+..
T Consensus 149 ~l~v~ntHl~~~~~~~~~---r~-~q~~~l~~~~~~--~~~p~Il~GDFN~~~~~~------------------~~~l~~ 204 (263)
T PRK05421 149 TLLVVNIHAINFSLGVDV---YS-KQLEPIGDQIAH--HSGPVILAGDFNTWSRKR------------------MNALKR 204 (263)
T ss_pred EEEEEEECccccCcChHH---HH-HHHHHHHHHHHh--CCCCEEEEcccccCcccc------------------hHHHHH
Confidence 599999999765332111 11 222445555554 356999999999743210 012333
Q ss_pred hhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCCCCCCccceEEEEeC
Q 048138 108 NFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 108 ~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~~~SDH~pv~~~l~l 182 (182)
.+...++.+... .+..+..+ .+.+|||||++ .+ .+.++.+... ..|||+||+++|++
T Consensus 205 ~~~~~~l~~~~~--~~~~~~~~------------~~~~ID~I~~~-~~--~v~~~~v~~~-~~SDH~Pv~a~l~l 261 (263)
T PRK05421 205 FARELGLKEVRF--TDDQRRRA------------FGRPLDFVFYR-GL--NVSKASVLVT-RASDHNPLLVEFSL 261 (263)
T ss_pred HHHHcCCCccCc--CCcccccc------------cCCCcceEEEC-Cc--EEEEEEcCCC-CCCCccCEEEEEEe
Confidence 344456655321 11111101 12589999995 44 5777777754 59999999999875
No 10
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.38 E-value=1.2e-11 Score=95.03 Aligned_cols=66 Identities=9% Similarity=0.088 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCC
Q 048138 10 LGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQE 82 (182)
Q Consensus 10 ~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~ 82 (182)
++.+ ...++.++.++++.+.++++|+++..... +. +.++.+.++...-.+..+|+||||||..|++
T Consensus 134 l~~p-~~~~Rpilgi~i~~~~ffstH~~a~~~~d-----a~-aiV~~I~~~f~~~~~~~pw~I~GDFNr~P~s 199 (271)
T PRK15251 134 LRPP-TVASRPIIGIRIGNDVFFSIHALANGGTD-----AG-AIVRAVHNFFRPNMRHINWMIAGDFNRSPDR 199 (271)
T ss_pred ecCC-CCcccceEEEEecCeEEEEeeecCCCCcc-----HH-HHHHHHHHHHhhccCCCCEEEeccCCCCCcc
Confidence 4443 44577888899999999999998874321 11 3445566666511235799999999988764
No 11
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.32 E-value=4.4e-11 Score=93.74 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCEEEEEeC----cEEEEEEEeeCCCCCc---cchhhHHHHHHHHHHHHHHH--hcCCCCEEEEccCCccCCCccccCC
Q 048138 18 EGRLVTAEFD----SFFLLSCYVPNSGDGL---RRLSYRITEWDPSLSSYVKE--LEKKKPVILTGDLNCAHQEIDIYNP 88 (182)
Q Consensus 18 ~gR~i~~~~~----~~~i~nvy~p~~~~~~---~~~~~k~~~~~~~l~~~l~~--~~~~~~~Ii~GDFN~~~~~~d~~~~ 88 (182)
.+.++.+++. .+.|+|+|+.+..... .....|. ...+.|.++++. .+.+.++||+||||..+.+.
T Consensus 120 ~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~-~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s~----- 193 (283)
T TIGR03395 120 NKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRA-NQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGSN----- 193 (283)
T ss_pred CCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHH-HHHHHHHHHHhhccCCCCceEEEEeeCCCCCCCH-----
Confidence 4567777763 6999999997643210 0012233 333567777764 33467899999999976431
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCC----cCCCCcceeeEEEEChhhhc-c-cccc
Q 048138 89 AGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGG----RKTNRGWRLDYFLVSQSLAD-K-FHDS 162 (182)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~----~~~~~~~rID~i~~s~~~~~-~-~~~~ 162 (182)
.+..++..++..+.. . ....+||.+..+.- .+.....||||||++..... . ..+.
T Consensus 194 ---------------~~~~ml~~l~~~~p~---~-~g~~~T~d~~~N~~a~~~~~~~~~~~lDyvl~~~~~~~p~~~~~~ 254 (283)
T TIGR03395 194 ---------------EYHDMFKTLNVSEPR---Y-VGVPATWDATTNSIAKYYYPKEEPEYLDYIFVSKSHAQPPVWQNK 254 (283)
T ss_pred ---------------HHHHHHHHhcccCCC---c-CCCCCCcCCCcCchhhhhcCCCCcceEEEEEEECCCCCCccccce
Confidence 122234444444331 1 12457886543321 12234569999999965431 1 1110
Q ss_pred eec-----------CCCCCCCccceEEE
Q 048138 163 YIL-----------PDVTGSDHSPIGLI 179 (182)
Q Consensus 163 ~i~-----------~~~~~SDH~pv~~~ 179 (182)
.+. ....+|||+||...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 255 VLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred EEeccccccccccccccccccccceeee
Confidence 000 11237999999864
No 12
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.26 E-value=4.8e-11 Score=92.71 Aligned_cols=130 Identities=22% Similarity=0.162 Sum_probs=70.4
Q ss_pred CCCCCEEEEEe----CcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCC
Q 048138 16 DSEGRLVTAEF----DSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGN 91 (182)
Q Consensus 16 ~~~gR~i~~~~----~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~ 91 (182)
.+.++.+.+-. +.+.++++|.-+..-+... +| ..+..+.+.+.. -..++|++||||+.|-+.
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~--~~--~ql~~l~~~i~~--~~gpvIlaGDfNa~pWS~-------- 238 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTDP--QR--AQLLELGDQIAG--HSGPVILAGDFNAPPWSR-------- 238 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCccH--HH--HHHHHHHHHHHc--CCCCeEEeecCCCcchhH--------
Confidence 44555655543 4899999999754433221 21 111233344433 258999999999976321
Q ss_pred CCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCCCCC
Q 048138 92 RRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGS 171 (182)
Q Consensus 92 ~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~~~S 171 (182)
... .+...+..+.+....-.+. -|+...+... .+..|||||++. + .+.+...... .+|
T Consensus 239 ------------~~~-R~~~l~~~~~~~~aG~~~~-~~~p~~~~r~----~g~PIDhvf~rg-l--~~~ka~rl~~-~gS 296 (309)
T COG3021 239 ------------TAK-RMAALGGLRAAPRAGLWEV-RFTPDERRRA----FGLPIDHVFYRG-L--TVMKARRLPD-RGS 296 (309)
T ss_pred ------------HHH-HHHHhcccccchhccCCcc-ccCHHHHhhc----cCCCcceeeecC-c--chhhhhhccc-cCC
Confidence 001 1222222222221110111 1222222111 245799999999 4 5666666665 699
Q ss_pred CccceEEEEe
Q 048138 172 DHSPIGLILK 181 (182)
Q Consensus 172 DH~pv~~~l~ 181 (182)
||+||.++|.
T Consensus 297 DH~PLLveF~ 306 (309)
T COG3021 297 DHRPLLVEFS 306 (309)
T ss_pred CCCceEEEEE
Confidence 9999999986
No 13
>PTZ00297 pantothenate kinase; Provisional
Probab=99.22 E-value=2.6e-10 Score=105.23 Aligned_cols=139 Identities=16% Similarity=0.183 Sum_probs=70.8
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHH----h------cCCCCEEEEccCCccCCCccccCCCCCCCCCCC
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKE----L------EKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGF 97 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~----~------~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~ 97 (182)
.+.++++|+-.......+..+ .+++.+++.. . +.+.|+||+||||....+ |... ...
T Consensus 151 ~v~v~~tHL~~~~~~~~R~~Q-----~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~~~-----~~~~---~~~ 217 (1452)
T PTZ00297 151 RIVFFNVHLRQEDSLPSTSSQ-----VQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNINGID-----PHNG---GHP 217 (1452)
T ss_pred eEEEEEeCCCCCCCcchHHHH-----HHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCcccc-----cccc---CCc
Confidence 599999999765443212211 1233333332 1 246799999999975211 1000 000
Q ss_pred CHHHHHHHHHhhh--hCCceeceeccCCC---C-CCccccCCCCCC-cCCCCcceeeEEEEChhhhcccccceecCC---
Q 048138 98 TDEERQSFGANFL--SKGFVDTFRAQHRG---V-VGYTYWGYRHGG-RKTNRGWRLDYFLVSQSLADKFHDSYILPD--- 167 (182)
Q Consensus 98 ~~~~~~~l~~~l~--~~~l~D~~~~~~~~---~-~~~T~~~~~~~~-~~~~~~~rID~i~~s~~~~~~~~~~~i~~~--- 167 (182)
..+. ..|...+. ..++.|++...... . +..+|++..... .......||||||+++.+ .+.++.|...
T Consensus 218 s~e~-~~ml~~l~~~~~~l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v--~v~~~~v~~~~~~ 294 (1452)
T PTZ00297 218 TKRF-QELLNELQDLGSGVREVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCV--QVEKPRIEKFVVS 294 (1452)
T ss_pred cHHH-HHHHHHhhhccccHhHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEeCCc--eEEEEEEeccccc
Confidence 1111 11222222 23456665443221 1 223444422110 001122499999999876 4556666322
Q ss_pred -----CCCCCccceEEEEeC
Q 048138 168 -----VTGSDHSPIGLILKL 182 (182)
Q Consensus 168 -----~~~SDH~pv~~~l~l 182 (182)
.++|||+||.++|.+
T Consensus 295 ~~~~~~~~SDH~Pv~a~l~l 314 (1452)
T PTZ00297 295 SRRPYTYLSDHFGVSARLTL 314 (1452)
T ss_pred CCCCCCCcCcCccEEEEEEe
Confidence 248999999999874
No 14
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.16 E-value=2e-10 Score=97.42 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=31.6
Q ss_pred EEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhc--CCCCEEEEccCCccCCCc
Q 048138 29 FFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELE--KKKPVILTGDLNCAHQEI 83 (182)
Q Consensus 29 ~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~--~~~~~Ii~GDFN~~~~~~ 83 (182)
|.|+|+|+-..... ...|+ .....|.+.++++. .+.|+|+|||||+.|.+.
T Consensus 419 l~VaNTHL~~~p~~---~dvRl-~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S~ 471 (606)
T PLN03144 419 LCVANTHIHANQEL---KDVKL-WQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA 471 (606)
T ss_pred EEEEEeeeccCCcc---chhHH-HHHHHHHHHHHHHhhcCCCceEEeccCCCCCCCh
Confidence 88999999322221 12233 22234555555542 467999999999988753
No 15
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.14 E-value=5.7e-11 Score=89.53 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=27.2
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcC---CCCEEEEccCCccCCC
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEK---KKPVILTGDLNCAHQE 82 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~---~~~~Ii~GDFN~~~~~ 82 (182)
.+.|+|+|+|+..... . ...+.+.+.+..... ..++|||||||+.+..
T Consensus 121 ~i~v~~~H~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 121 PITVVNVHLPSSNDER--Q-----EQWRELLARIQKIYADNPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp EEEEEEEETTSHHHHH--H-----HHHHHHHHHHHHHHHTSSCCEEEEEEE-SS-BSS
T ss_pred EEEeeeccccccchhh--h-----hhhhhhhhhhhhcccccccceEEEEeecccCCcc
Confidence 6889999998733211 1 111234444444322 2369999999998764
No 16
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.04 E-value=9.3e-10 Score=86.54 Aligned_cols=131 Identities=27% Similarity=0.364 Sum_probs=75.1
Q ss_pred cEEEEEEEeeC--CCCCccchhhHH-HHHHHHHHHHHHHh-cCCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHH
Q 048138 28 SFFLLSCYVPN--SGDGLRRLSYRI-TEWDPSLSSYVKEL-EKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQ 103 (182)
Q Consensus 28 ~~~i~nvy~p~--~~~~~~~~~~k~-~~~~~~l~~~l~~~-~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~ 103 (182)
.+.++|+|+-+ ....+.-...|. +.|. +.++++.. ..+.-+|++||||..|.+....
T Consensus 129 ~v~~yntHLHAeY~rq~D~YL~HR~~QAwd--laqfi~~t~q~~~vVI~~GDLN~~P~dl~~~----------------- 189 (422)
T KOG3873|consen 129 MVNLYNTHLHAEYDRQNDEYLCHRVAQAWD--LAQFIRATRQNADVVILAGDLNMQPQDLGHK----------------- 189 (422)
T ss_pred EeeeeehhccccccccCchhhhHHHHHHHH--HHHHHHHHhcCCcEEEEecCCCCCcccccee-----------------
Confidence 57777877733 222222222222 2443 55566653 3567799999999988754221
Q ss_pred HHHHhhhhCCceeceeccCCCC---------------CCccccCCCCCCc-------CCCCcceeeEEEEChhhhc-ccc
Q 048138 104 SFGANFLSKGFVDTFRAQHRGV---------------VGYTYWGYRHGGR-------KTNRGWRLDYFLVSQSLAD-KFH 160 (182)
Q Consensus 104 ~l~~~l~~~~l~D~~~~~~~~~---------------~~~T~~~~~~~~~-------~~~~~~rID~i~~s~~~~~-~~~ 160 (182)
.+.+.||+|+|+..++.. .+.|+.+..+ ++ ....+.||||+|+++.... +..
T Consensus 190 ----ll~~a~l~daw~~~h~~q~e~~~~r~s~~~~l~~g~tcd~~~N-~y~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a 264 (422)
T KOG3873|consen 190 ----LLLSAGLVDAWTSLHLDQCESDSFRLSEDKELVEGNTCDSPLN-CYTSAQKREDDPLGKRIDYVLVKPGDCNAKIA 264 (422)
T ss_pred ----eeeccchhhhHhhhchhhhcCcccccchhhhhhcCCcccCcch-hhhHHHhCCCCccceeeeEEEEcCcceEEEee
Confidence 344667777777666542 1223332211 11 1124679999999987642 233
Q ss_pred cceecC------CCCCCCccceEEEEeC
Q 048138 161 DSYILP------DVTGSDHSPIGLILKL 182 (182)
Q Consensus 161 ~~~i~~------~~~~SDH~pv~~~l~l 182 (182)
++++.. +...|||.+++++|++
T Consensus 265 ~~~~t~~rvP~~d~s~SDH~Al~a~L~I 292 (422)
T KOG3873|consen 265 EVEFTEPRVPGEDCSYSDHEALMATLKI 292 (422)
T ss_pred eEEecCCCCCCCCCCccchhhheeEEEe
Confidence 344332 1236999999999864
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=98.70 E-value=4.7e-08 Score=74.40 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=74.4
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHH---HHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHHH
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWD---PSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQS 104 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~---~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~ 104 (182)
.+.+++.|+-+....+ ..+.++|- +.+.+.++.+ ++..||.+||.|.......+.
T Consensus 205 Kl~l~tsHLEStr~h~---P~r~~qF~~~~~k~~EaIe~l-PnA~ViFGGD~NlrD~ev~r~------------------ 262 (349)
T KOG2756|consen 205 KLCLMTSHLESTRGHA---PERMNQFKMVLKKMQEAIESL-PNATVIFGGDTNLRDREVTRC------------------ 262 (349)
T ss_pred eEEEEeccccCCCCCC---hHHHHHHHHHHHHHHHHHHhC-CCceEEEcCcccchhhhcccC------------------
Confidence 7999999997655432 11222443 3445555554 789999999999753211100
Q ss_pred HHHhhhhCCceeceeccC-CCCCCccccCCCCCCcCCC--CcceeeEEEEChhhh-----cc------cccceecCCCCC
Q 048138 105 FGANFLSKGFVDTFRAQH-RGVVGYTYWGYRHGGRKTN--RGWRLDYFLVSQSLA-----DK------FHDSYILPDVTG 170 (182)
Q Consensus 105 l~~~l~~~~l~D~~~~~~-~~~~~~T~~~~~~~~~~~~--~~~rID~i~~s~~~~-----~~------~~~~~i~~~~~~ 170 (182)
=...+.+|+|..+. |..-+|||....+....++ -..|+|+||..-.-. .. .+..+-.. .++
T Consensus 263 ----~lPD~~vDvWE~lg~p~~~~FTwDT~~N~nl~G~~a~k~RfDRi~~r~~~~~G~~~~~~l~l~g~~kiRgc~-~fP 337 (349)
T KOG2756|consen 263 ----GLPDNIVDVWEFLGKPKHCQFTWDTQMNSNLGGTAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLRGCG-RFP 337 (349)
T ss_pred ----CCCchHHHHHHHhCCCCcCceeeecccCcccchhHHHHHHHHHHhhhhhhhcCCcCccccchhhhhhhccCC-CCC
Confidence 01235678888775 6667899976544322222 235899999943321 00 00000011 358
Q ss_pred CCccceEEEEe
Q 048138 171 SDHSPIGLILK 181 (182)
Q Consensus 171 SDH~pv~~~l~ 181 (182)
|||+++.++|.
T Consensus 338 SDHwgll~Tl~ 348 (349)
T KOG2756|consen 338 SDHWGLLCTLD 348 (349)
T ss_pred cccceeeeecc
Confidence 99999999875
No 18
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=98.57 E-value=2e-07 Score=72.61 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=28.3
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCC
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQ 81 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~ 81 (182)
.+.++++|+.+..... ++...++.+.+..++. ...++|++||||+...
T Consensus 143 ~F~li~~H~~p~~~~~-----e~~aL~~v~~~~~~~~-~~~~villGDFNa~~~ 190 (276)
T smart00476 143 EFVIVPLHTTPEAAVA-----EIDALYDVYLDVRQKW-GTEDVIFMGDFNAGCS 190 (276)
T ss_pred cEEEEEecCChHHHHH-----HHHHHHHHHHHHHHhh-ccCCEEEEccCCCCCC
Confidence 6999999996643211 1101112223333322 5789999999999654
No 19
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.50 E-value=2.1e-06 Score=68.30 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=43.6
Q ss_pred eeeeCCCCCCCCCCCCEEEEEeC--cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHH-------hcCCCCEEEEcc
Q 048138 5 SVTYGLGISDHDSEGRLVTAEFD--SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKE-------LEKKKPVILTGD 75 (182)
Q Consensus 5 ~~~~~~~~~~~~~~gR~i~~~~~--~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~-------~~~~~~~Ii~GD 75 (182)
.+..|+...-.+..|..+..++. .+.++|+|++++... ...|...|. .+.+.+.- +...+.+|++||
T Consensus 114 ~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~---~~~R~~~~~-~I~~~~~f~~~~~~~~~~~d~~f~~GD 189 (310)
T smart00128 114 TVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN---VEQRNQDYK-TILRALSFPERAELSQFDHDVVFWFGD 189 (310)
T ss_pred eeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch---hhhhHHHHH-HHHHhcCCCCCccccccccceEEEecC
Confidence 35566554434556677777775 599999999986653 222321222 23222210 013578999999
Q ss_pred CCccCC
Q 048138 76 LNCAHQ 81 (182)
Q Consensus 76 FN~~~~ 81 (182)
||-..+
T Consensus 190 lNyRi~ 195 (310)
T smart00128 190 LNFRLD 195 (310)
T ss_pred cceeec
Confidence 998654
No 20
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=98.14 E-value=1.6e-05 Score=68.44 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=76.8
Q ss_pred CcEEEEEEEeeCCCCC-c----------cchhhHHHHHHHHHHHHHHHhc---CCCCEEEEccCCccCCCccccCCCCCC
Q 048138 27 DSFFLLSCYVPNSGDG-L----------RRLSYRITEWDPSLSSYVKELE---KKKPVILTGDLNCAHQEIDIYNPAGNR 92 (182)
Q Consensus 27 ~~~~i~nvy~p~~~~~-~----------~~~~~k~~~~~~~l~~~l~~~~---~~~~~Ii~GDFN~~~~~~d~~~~~~~~ 92 (182)
+.|+++.-|+.+.... . .-...|. +--+.|..+++..+ ...+++|+||||....+.
T Consensus 621 ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~-~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~ed--------- 690 (798)
T COG2374 621 EKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRV-RAAQALAAFLATNPTGKADADIVILGDFNDYAFED--------- 690 (798)
T ss_pred cEEEEEEeeecccCCCCCCcccccccccchhhHHH-HHHHHHHHHHhhCcccccCCCEEEEeccchhhhcc---------
Confidence 3689999999654321 1 1122222 33456777777532 467899999999864321
Q ss_pred CCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecC------
Q 048138 93 RSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILP------ 166 (182)
Q Consensus 93 ~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~------ 166 (182)
.+. .+.+.|+....-.+++....|+|.-. .. ...+||+|+|.++..++..+..++
T Consensus 691 -----------pI~-~l~~aGy~~l~~~~~~~~~~YSY~f~---G~----~gtLDhaLas~sl~~~v~~a~ewHINAdE~ 751 (798)
T COG2374 691 -----------PIQ-ALEGAGYMNLAARFHDAGDRYSYVFN---GQ----SGTLDHALASASLAAQVSGATEWHINADEP 751 (798)
T ss_pred -----------HHH-HHhhcCchhhhhhccCCCCceEEEEC---Cc----cchHhhhhhhhhhhhhccCceeeeeccccc
Confidence 122 45555654444444555555665321 11 147999999999876665554331
Q ss_pred ---------------------CCCCCCccceEEEEeC
Q 048138 167 ---------------------DVTGSDHSPIGLILKL 182 (182)
Q Consensus 167 ---------------------~~~~SDH~pv~~~l~l 182 (182)
..+.|||-||++.|+|
T Consensus 752 ~~ldYn~~Fk~q~~~~~~~~~~fR~SDHDPvvvglnL 788 (798)
T COG2374 752 DALDYNLEFKGQNVSLYKTTNPFRASDHDPVVVGLNL 788 (798)
T ss_pred chhhhhhhhccccccccccCCccccCCCCCeEEEEEe
Confidence 0246999999999875
No 21
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=98.02 E-value=2.7e-05 Score=64.20 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=36.4
Q ss_pred CCCEEEEEe-------CcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcC----CCCEEEEccCCccCCCc
Q 048138 18 EGRLVTAEF-------DSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEK----KKPVILTGDLNCAHQEI 83 (182)
Q Consensus 18 ~gR~i~~~~-------~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~----~~~~Ii~GDFN~~~~~~ 83 (182)
-|-+|.+++ +++.|+|+|+-....+. ..|+ .....|.+.++++.. +-|+|+|||||+.|.+.
T Consensus 236 V~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~---~vrL-~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~~ 308 (495)
T KOG2338|consen 236 VGLVVSLEFRLVDESSQGILVANTHLLFNPSRS---DVRL-AQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDSP 308 (495)
T ss_pred eeEEEEEEecccCcccCceEEEeeeeeecCccc---chhh-HHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCCC
Confidence 344555555 27999999994322211 1132 222335555555432 34999999999988643
No 22
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=97.59 E-value=0.00021 Score=58.26 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=24.2
Q ss_pred eeEEEEChhhhcccccceecCCCCCCCccceEEEEeC
Q 048138 146 LDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 146 ID~i~~s~~~~~~~~~~~i~~~~~~SDH~pv~~~l~l 182 (182)
-|+|++.+.-. ......-.+....|||.||++.+++
T Consensus 291 tDRIl~~s~~~-~p~sY~sip~l~~SDHrPV~a~~~~ 326 (460)
T COG5411 291 TDRILYKSEQL-TPHSYSSIPHLMISDHRPVYATFRA 326 (460)
T ss_pred hhhhhhhcccc-ccccccccCceeecCCCeEEEEEec
Confidence 39999987631 2232333343568999999999864
No 23
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=97.56 E-value=0.00072 Score=57.59 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=22.5
Q ss_pred ceeeEEEEChhhhcccccceecCCCCCCCccceEEEEeC
Q 048138 144 WRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 144 ~rID~i~~s~~~~~~~~~~~i~~~~~~SDH~pv~~~l~l 182 (182)
+-.|+||....-. +... .-..+...|||.||.+.|.+
T Consensus 555 SWCDRILykg~~i-~~l~-Y~s~ei~~SDHRPV~A~F~v 591 (621)
T PLN03191 555 AWCDRILWLGKGI-KQLC-YKRSEIRLSDHRPVSSMFLV 591 (621)
T ss_pred chhheEeecCCCc-eEeE-eccCCcccCCchhcceEEEE
Confidence 4589999864321 1111 11234568999999988753
No 24
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=97.35 E-value=0.00094 Score=53.27 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=29.3
Q ss_pred CCccccCCCCCCcCCCCcceeeEEEEChhhhcccccc----------ee---cCCCCCCCccceEEEEe
Q 048138 126 VGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDS----------YI---LPDVTGSDHSPIGLILK 181 (182)
Q Consensus 126 ~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~----------~i---~~~~~~SDH~pv~~~l~ 181 (182)
.++|.|++... .-|||||+...+.-+.+.. .+ .+..++|||.|+..++.
T Consensus 303 ~~fTN~t~~~k-------G~iDYIfy~~~~~~~~~~~l~~ve~e~~~k~~G~pn~~~pSdhipl~~ef~ 364 (378)
T COG5239 303 LGFTNWTPGFK-------GVIDYIFYHGGLLTRQTGLLGVVEGEYASKVIGLPNMPFPSDHIPLLAEFA 364 (378)
T ss_pred ccccccccccc-------ceeEEEEEecCcceeeeccccccccchhhhhcccCCCCCccccccchhccc
Confidence 45777665432 4799999998732121111 11 12235899999988764
No 25
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=97.33 E-value=0.00036 Score=56.50 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.0
Q ss_pred CCCEEEEccCCccCCCc
Q 048138 67 KKPVILTGDLNCAHQEI 83 (182)
Q Consensus 67 ~~~~Ii~GDFN~~~~~~ 83 (182)
.-|++++||||+.+...
T Consensus 221 ~~p~l~~gdfNs~p~~~ 237 (361)
T KOG0620|consen 221 SFPLLLCGDFNSTPLSP 237 (361)
T ss_pred ccceeeeccccCCCCcc
Confidence 46899999999987643
No 26
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0017 Score=57.57 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=40.4
Q ss_pred eeeCCCCCCCCCCCCEEEEEe----CcEEEEEEEeeCCCCC--ccchhhHHHHHHHHHHHHHHH-----hcCCCCEEEEc
Q 048138 6 VTYGLGISDHDSEGRLVTAEF----DSFFLLSCYVPNSGDG--LRRLSYRITEWDPSLSSYVKE-----LEKKKPVILTG 74 (182)
Q Consensus 6 ~~~~~~~~~~~~~gR~i~~~~----~~~~i~nvy~p~~~~~--~~~~~~k~~~~~~~l~~~l~~-----~~~~~~~Ii~G 74 (182)
+..||+. .-.....+.++| ..+.+++.|+.++... .++++|+ .+.+-|.= +...+.++.||
T Consensus 650 kKTGfGG--~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~DY~------tI~r~l~Fp~Gr~I~~HD~ifW~G 721 (1080)
T KOG0566|consen 650 KKTGFGG--ATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVEERNEDYK------TIARKLRFPRGRMIFSHDYIFWLG 721 (1080)
T ss_pred eeccccc--ccCCCceEEEEEEeccccEEEEecccccccchHhhhhhhHH------HHHHhccccCCccccCCceEEEec
Confidence 4455544 333457788877 3899999999887763 2334333 23222211 12357799999
Q ss_pred cCCcc
Q 048138 75 DLNCA 79 (182)
Q Consensus 75 DFN~~ 79 (182)
|||-.
T Consensus 722 DFNYR 726 (1080)
T KOG0566|consen 722 DFNYR 726 (1080)
T ss_pred cccee
Confidence 99965
No 27
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=97.29 E-value=0.0016 Score=52.17 Aligned_cols=151 Identities=23% Similarity=0.321 Sum_probs=84.6
Q ss_pred CCCCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHh-cCCCCEEEEccCCccCCCccccC-CCCCC
Q 048138 15 HDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKEL-EKKKPVILTGDLNCAHQEIDIYN-PAGNR 92 (182)
Q Consensus 15 ~~~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~-~~~~~~Ii~GDFN~~~~~~d~~~-~~~~~ 92 (182)
.+.+||+++...+.+.+++||.|....+.... ++ .|+..+....+.+ ..++++++ |..+...+.-. +....
T Consensus 9 ~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~~~--~~-~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~~~~~~ 81 (335)
T KOG1294|consen 9 LDSEGRCVIVDKEMFVLINVYCPRNSPEISKR--RL-RFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEACEKFS 81 (335)
T ss_pred hhccCCeeeeecccccccceeccccCCcchhh--hh-hhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhhhhccc
Confidence 46799999999999999999999877653211 33 6666677777774 56778777 65554332211 11000
Q ss_pred CCCCCCHHHHHHHHHhhhhCCc-eeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCCCCC
Q 048138 93 RSAGFTDEERQSFGANFLSKGF-VDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGS 171 (182)
Q Consensus 93 ~~~~~~~~~~~~l~~~l~~~~l-~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~~~S 171 (182)
+......+.+. +. .+....+ ++.....++....||.+.......+.+...++|++.+.+-... . .+. ...|
T Consensus 82 ~~~~~~~~l~d-~~-~~~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v~-~---~~~--~~~s 153 (335)
T KOG1294|consen 82 GDPEISSELRD-LQ-CLLETKCTIDSGPCSHPTEKGYTHSLLSCASKKDGYSGEIDYSKFKPLKVH-Y---GFG--AMGS 153 (335)
T ss_pred cchhccccchh-hh-hhhhccceeccCcceecccCCcccceeecccccCCccceeeeeecccceee-e---ccc--ccCC
Confidence 00000111111 11 1122222 5666666666666766544433334456678888887774421 1 111 1489
Q ss_pred CccceEEEE
Q 048138 172 DHSPIGLIL 180 (182)
Q Consensus 172 DH~pv~~~l 180 (182)
||+|+...+
T Consensus 154 ~h~~~g~~i 162 (335)
T KOG1294|consen 154 DHRPVGRVI 162 (335)
T ss_pred ccCccceEE
Confidence 999987654
No 28
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=92.83 E-value=0.79 Score=36.21 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=30.5
Q ss_pred cEEEEEEEeeCCCCCc--c------chhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCC
Q 048138 28 SFFLLSCYVPNSGDGL--R------RLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQE 82 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~--~------~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~ 82 (182)
.+.++|+|+-+....- . ....|...+...|.+.-....+..++++.||||-..+.
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld~ 143 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLDG 143 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeecc
Confidence 7999999997754321 0 11112111112222222223467899999999977653
No 29
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=68.70 E-value=12 Score=29.97 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=24.5
Q ss_pred eeeEEEEChhhhccccc---ce-------ecCCCCCCCccceEEEEe
Q 048138 145 RLDYFLVSQSLADKFHD---SY-------ILPDVTGSDHSPIGLILK 181 (182)
Q Consensus 145 rID~i~~s~~~~~~~~~---~~-------i~~~~~~SDH~pv~~~l~ 181 (182)
-.|+|+.++.....+.. +. +....+..||-||.+.+.
T Consensus 341 WcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~e~c~GdHKpVfl~~~ 387 (391)
T KOG1976|consen 341 WCDRILMNDRANELVKHDEFEASGLYYGLVGEEKCVGDHKPVFLHAS 387 (391)
T ss_pred hhhhhhcCccHHHHhhccccCcccceecccccccccCCCcceEEEEe
Confidence 48999999876544431 11 123345799999998765
No 30
>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]
Probab=44.55 E-value=22 Score=29.26 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=36.1
Q ss_pred eeCCCCCC-CCCCCCEEEEEe-CcEEEEEEE-eeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCc
Q 048138 7 TYGLGISD-HDSEGRLVTAEF-DSFFLLSCY-VPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNC 78 (182)
Q Consensus 7 ~~~~~~~~-~~~~gR~i~~~~-~~~~i~nvy-~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~ 78 (182)
.+|||++. .|-.+.+|..++ ..+-+..|+ +.+.. ..++.|..++..+. +.=+|=||||.
T Consensus 169 e~gfpVPkpiD~~RH~Vvmelv~g~Pl~~v~~v~d~~-----------~ly~~lm~~Iv~la--~~GlIHgDFNE 230 (465)
T KOG2268|consen 169 ERGFPVPKPIDHNRHCVVMELVDGYPLRQVRHVEDPP-----------TLYDDLMGLIVRLA--NHGLIHGDFNE 230 (465)
T ss_pred HcCCCCCCcccccceeeHHHhhcccceeeeeecCChH-----------HHHHHHHHHHHHHH--HcCceecccch
Confidence 47899984 566667776665 677777777 22211 23344555565542 34467799995
No 31
>PRK09716 hypothetical protein; Provisional
Probab=39.66 E-value=35 Score=26.19 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCCCEEEEccCC
Q 048138 56 SLSSYVKELEKKKPVILTGDLN 77 (182)
Q Consensus 56 ~l~~~l~~~~~~~~~Ii~GDFN 77 (182)
++...+..+.+++..||.|||-
T Consensus 48 ~mvtlln~lqpggkciitgdfq 69 (395)
T PRK09716 48 EMVTLLNTLQPGGKCIITGDFQ 69 (395)
T ss_pred HHHHHHHhcCCCCeEEEeCcHH
Confidence 3555566677899999999995
No 32
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=37.41 E-value=48 Score=27.32 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=29.3
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCC
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQE 82 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~ 82 (182)
.+-++-=|..+++++.+- .| ..+....++.+...-+|-.||||..+..
T Consensus 45 tvgfFHPYCNAGGGGErV------LW-~Avr~~q~k~~n~~~viYsGD~n~t~~~ 92 (465)
T KOG1387|consen 45 TVGFFHPYCNAGGGGERV------LW-KAVRITQRKFPNNVIVIYSGDFNVTPEN 92 (465)
T ss_pred EEEEecccccCCCCccee------hh-HHHHHHHHhCCCceEEEEeCCCCCCHHH
Confidence 456666677666665321 23 2344444445556778999999987654
No 33
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=29.28 E-value=79 Score=22.52 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCCCEEEEccC
Q 048138 55 PSLSSYVKELEKKKPVILTGDL 76 (182)
Q Consensus 55 ~~l~~~l~~~~~~~~~Ii~GDF 76 (182)
+.+.+.+++ .....+|++||+
T Consensus 31 ~~l~~~~~~-~~~d~lii~GDl 51 (172)
T cd07391 31 ERLDRLIEE-YGPERLIILGDL 51 (172)
T ss_pred HHHHHHHHh-cCCCEEEEeCcc
Confidence 445555554 245789999994
No 34
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=27.83 E-value=93 Score=20.41 Aligned_cols=19 Identities=21% Similarity=0.592 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCCEEEEcc
Q 048138 56 SLSSYVKELEKKKPVILTGD 75 (182)
Q Consensus 56 ~l~~~l~~~~~~~~~Ii~GD 75 (182)
.|.+.++.. ++.++|+.||
T Consensus 54 ~i~~i~~~f-P~~kfiLIGD 72 (100)
T PF09949_consen 54 NIERILRDF-PERKFILIGD 72 (100)
T ss_pred HHHHHHHHC-CCCcEEEEee
Confidence 345555543 6889999999
No 35
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=27.81 E-value=72 Score=24.48 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHh--cCCCCEEEEccCCc
Q 048138 52 EWDPSLSSYVKEL--EKKKPVILTGDLNC 78 (182)
Q Consensus 52 ~~~~~l~~~l~~~--~~~~~~Ii~GDFN~ 78 (182)
+|++ |.+..+.- -++.++|.||||=.
T Consensus 57 QFyD-L~eLFrtgG~vP~tnYiFmGDfVD 84 (306)
T KOG0373|consen 57 QFYD-LLELFRTGGQVPDTNYIFMGDFVD 84 (306)
T ss_pred hHHH-HHHHHHhcCCCCCcceEEeccccc
Confidence 6664 45555541 24778999999964
No 36
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=27.60 E-value=70 Score=26.43 Aligned_cols=42 Identities=10% Similarity=-0.071 Sum_probs=27.1
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccC
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAH 80 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~ 80 (182)
+++|.+.|.|..+..- ..+.|..+.+ .++-.+|-.||||+..
T Consensus 3 DLHIHs~~S~a~~~~m---------~~~~i~~~a~--~KGldvIg~~D~~~p~ 44 (374)
T TIGR00375 3 DLHIHIGRTRGAKTLT---------LDRILVEQSR--LKGLELLGIIDCHSPL 44 (374)
T ss_pred ccceecCcCCCCCccC---------CHHHHHHHHH--hcCCEEEEEecCCCch
Confidence 5778888887766531 1122333222 3688999999999973
No 37
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=27.01 E-value=1.1e+02 Score=28.24 Aligned_cols=34 Identities=12% Similarity=0.383 Sum_probs=24.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccC
Q 048138 43 LRRLSYRITEWDPSLSSYVKELEKKKPVILTGDL 76 (182)
Q Consensus 43 ~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDF 76 (182)
.+.+..|+.++-+.+.+.++.++.+.-.|+|||=
T Consensus 228 H~~M~~KL~qmD~vI~~ii~~mdedTlLvVmGDH 261 (895)
T KOG2126|consen 228 HPEMADKLVQMDRVINEIIKKMDEDTLLVVMGDH 261 (895)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCeeEEEecCC
Confidence 3556667756666677777777767789999993
No 38
>PF15569 Imm21: Immunity protein 21
Probab=26.54 E-value=77 Score=20.51 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCCEEEEccCCcc
Q 048138 57 LSSYVKELEKKKPVILTGDLNCA 79 (182)
Q Consensus 57 l~~~l~~~~~~~~~Ii~GDFN~~ 79 (182)
..+.+.-+....-+|++||-...
T Consensus 17 al~ii~~~~~~~i~ILGGDVY~~ 39 (91)
T PF15569_consen 17 ALKIINICEEKNIPILGGDVYKL 39 (91)
T ss_pred HHHHHHHHHhcCceEEcceEEEe
Confidence 34444444557889999997754
No 39
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=25.17 E-value=1.2e+02 Score=20.30 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEccCC
Q 048138 52 EWDPSLSSYVKELEKKKPVILTGDLN 77 (182)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~~Ii~GDFN 77 (182)
.|.+.+.+.++++..+..+|++-|+-
T Consensus 43 ~~~~~l~~~i~~~~~~~~vivltDl~ 68 (116)
T TIGR00824 43 TLQEKYNAALADLDTEEEVLFLVDIF 68 (116)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 45667788888776778999999964
No 40
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=23.86 E-value=84 Score=21.37 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=10.0
Q ss_pred HHHhcCCCCEEEEccC
Q 048138 61 VKELEKKKPVILTGDL 76 (182)
Q Consensus 61 l~~~~~~~~~Ii~GDF 76 (182)
++.+.....+|++||+
T Consensus 20 ~~~~~~~d~vi~~GDi 35 (156)
T PF12850_consen 20 LEYINEPDFVIILGDI 35 (156)
T ss_dssp HHHHTTESEEEEES-S
T ss_pred HHHhcCCCEEEECCCc
Confidence 3333346779999997
No 41
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=23.76 E-value=1.1e+02 Score=21.75 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=13.9
Q ss_pred HHHHHHH-hcCCCCEEEEccCCc
Q 048138 57 LSSYVKE-LEKKKPVILTGDLNC 78 (182)
Q Consensus 57 l~~~l~~-~~~~~~~Ii~GDFN~ 78 (182)
+.+.+.+ +.....+|++||+=.
T Consensus 32 ~i~~~~~~~~~~d~vi~~GDl~~ 54 (168)
T cd07390 32 LIRNWNETVGPDDTVYHLGDFSF 54 (168)
T ss_pred HHHHHhhhcCCCCEEEEeCCCCC
Confidence 3333433 344678999999754
No 42
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=23.70 E-value=94 Score=23.41 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCCEEEEcc
Q 048138 55 PSLSSYVKELEKKKPVILTGD 75 (182)
Q Consensus 55 ~~l~~~l~~~~~~~~~Ii~GD 75 (182)
+.+..+|+....++|+||+|.
T Consensus 82 ~AF~~yL~~~n~GRPfILaGH 102 (207)
T PF11288_consen 82 AAFDYYLANYNNGRPFILAGH 102 (207)
T ss_pred HHHHHHHHhcCCCCCEEEEEe
Confidence 445556666667899999996
No 43
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=23.40 E-value=46 Score=20.55 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=11.2
Q ss_pred CCCCEEEEccCCcc
Q 048138 66 KKKPVILTGDLNCA 79 (182)
Q Consensus 66 ~~~~~Ii~GDFN~~ 79 (182)
....+.|+||||-.
T Consensus 11 ~a~~V~v~G~F~~W 24 (79)
T cd02859 11 GGKEVYVTGSFDNW 24 (79)
T ss_pred CCcEEEEEEEcCCC
Confidence 35689999999964
No 44
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=22.80 E-value=78 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=17.0
Q ss_pred HHHHHHHHHhc-C--CCCEEEEccCCccCC
Q 048138 55 PSLSSYVKELE-K--KKPVILTGDLNCAHQ 81 (182)
Q Consensus 55 ~~l~~~l~~~~-~--~~~~Ii~GDFN~~~~ 81 (182)
+.|.+++..+. . -.-+|++|+|=....
T Consensus 17 ~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~ 46 (209)
T PF04042_consen 17 EPLRDLLSGVEDASKPDVLILMGPFIDSPH 46 (209)
T ss_dssp HHHHHHHHCCCHCTTECEEEEES-SCBTTS
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCcCccc
Confidence 45666666543 2 345899999987644
No 45
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=22.30 E-value=1.1e+02 Score=23.93 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=10.6
Q ss_pred CCCCEEEEccCCcc
Q 048138 66 KKKPVILTGDLNCA 79 (182)
Q Consensus 66 ~~~~~Ii~GDFN~~ 79 (182)
+.+-+|+||||=..
T Consensus 28 ~~D~lI~~GDf~~~ 41 (262)
T cd00844 28 KVDLLICCGDFQAV 41 (262)
T ss_pred CCcEEEEcCCCCCc
Confidence 45679999999443
No 46
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=22.26 E-value=1.1e+02 Score=23.10 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=15.0
Q ss_pred HHHHHHHHHh-cCCCCEEEEccCC
Q 048138 55 PSLSSYVKEL-EKKKPVILTGDLN 77 (182)
Q Consensus 55 ~~l~~~l~~~-~~~~~~Ii~GDFN 77 (182)
+.+.+.++.+ +..+-+|++|||-
T Consensus 29 ~~i~~~~~~~~~~~D~viiaGDl~ 52 (232)
T cd07393 29 EKIKENWDNVVAPEDIVLIPGDIS 52 (232)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCc
Confidence 3445555543 3567789999985
No 47
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=22.25 E-value=91 Score=21.46 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.3
Q ss_pred CCCEEEEccCCcc
Q 048138 67 KKPVILTGDLNCA 79 (182)
Q Consensus 67 ~~~~Ii~GDFN~~ 79 (182)
.+.+|++||+-..
T Consensus 25 ~d~ii~~GD~~~~ 37 (155)
T cd00841 25 VDLIIHAGDVLYP 37 (155)
T ss_pred CCEEEECCccccc
Confidence 5789999997653
No 48
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=22.17 E-value=2.3e+02 Score=18.80 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCCCEEEEccC
Q 048138 56 SLSSYVKELEKKKPVILTGDL 76 (182)
Q Consensus 56 ~l~~~l~~~~~~~~~Ii~GDF 76 (182)
.+.+.+++..++.++|++|-.
T Consensus 57 ~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 57 ELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHHCCCCEEEECCcc
Confidence 355667765566778888753
No 49
>PRK04011 peptide chain release factor 1; Provisional
Probab=21.84 E-value=2.3e+02 Score=23.68 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.2
Q ss_pred cEEEEEEEeeCCCCC
Q 048138 28 SFFLLSCYVPNSGDG 42 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~ 42 (182)
.-.++|+|+|+...-
T Consensus 26 ~t~~iSlyip~~~~i 40 (411)
T PRK04011 26 GTELISLYIPPGRPI 40 (411)
T ss_pred CceEEEEEECCCCcH
Confidence 568999999987753
No 50
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=21.64 E-value=1.3e+02 Score=22.29 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEccCC
Q 048138 52 EWDPSLSSYVKELEKKKPVILTGDLN 77 (182)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~~Ii~GDFN 77 (182)
.|+....+.+...-+...++++||+=
T Consensus 30 ~YL~~~~~~~~~~l~Pd~V~fLGDLf 55 (193)
T cd08164 30 YFLGHIVSMMQFWLKPDAVVVLGDLF 55 (193)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccc
Confidence 44445555555444577899999943
Done!