Query 048138
Match_columns 182
No_of_seqs 136 out of 1351
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 11:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 3.8E-34 1.3E-38 220.2 15.5 177 3-181 79-256 (265)
2 2j63_A AP-endonuclease; base e 100.0 1.8E-32 6.1E-37 226.0 18.3 169 14-182 265-466 (467)
3 2o3h_A DNA-(apurinic or apyrim 100.0 5E-30 1.7E-34 198.8 17.0 178 3-182 106-285 (285)
4 2jc5_A Exodeoxyribonuclease; h 100.0 4.1E-30 1.4E-34 196.0 14.9 177 5-182 79-256 (259)
5 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 1.9E-29 6.6E-34 192.4 18.6 174 6-182 77-257 (257)
6 1hd7_A DNA-(apurinic or apyrim 100.0 1.5E-30 5E-35 205.5 12.5 178 3-182 139-318 (318)
7 2jc4_A Exodeoxyribonuclease II 100.0 5.5E-29 1.9E-33 189.5 16.7 175 6-182 76-256 (256)
8 1ako_A Exonuclease III; AP-end 99.9 6.3E-27 2.2E-31 179.2 10.4 176 4-181 74-267 (268)
9 1vyb_A ORF2 contains A reverse 99.9 3.7E-25 1.3E-29 166.5 11.0 143 16-181 92-238 (238)
10 2ei9_A Non-LTR retrotransposon 99.9 3E-22 1E-26 152.3 8.9 139 17-181 78-218 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 99.8 1.9E-20 6.4E-25 142.1 14.0 136 20-182 104-243 (245)
12 3teb_A Endonuclease/exonucleas 99.8 8.4E-19 2.9E-23 133.7 10.6 136 18-182 122-266 (266)
13 4gew_A 5'-tyrosyl-DNA phosphod 99.8 1.7E-18 5.7E-23 138.9 10.8 133 19-181 212-361 (362)
14 3g6s_A Putative endonuclease/e 99.8 3.8E-18 1.3E-22 130.7 12.3 123 28-181 131-259 (267)
15 4fva_A 5'-tyrosyl-DNA phosphod 99.8 6.4E-18 2.2E-22 127.6 11.0 133 19-181 106-255 (256)
16 3l1w_A Uncharacterized protein 99.7 1.7E-17 5.9E-22 126.2 9.2 122 28-182 125-251 (257)
17 1zwx_A SMCL, sphingomyelinase- 99.7 4.4E-17 1.5E-21 126.7 10.6 137 20-182 132-300 (301)
18 3mpr_A Putative endonuclease/e 99.7 4.6E-17 1.6E-21 126.9 9.4 122 28-181 135-288 (298)
19 4gz1_A Tyrosyl-DNA phosphodies 99.7 1.5E-17 5.3E-22 125.4 6.5 130 28-182 115-254 (256)
20 4f1h_A Tyrosyl-DNA phosphodies 99.7 2.5E-17 8.4E-22 123.0 7.4 130 28-182 109-250 (250)
21 2ddr_A Sphingomyelin phosphodi 99.7 7.8E-16 2.7E-20 119.7 11.9 144 20-182 132-305 (306)
22 3i41_A Beta-hemolysin; beta to 99.5 4E-14 1.4E-18 111.4 11.4 112 20-156 151-275 (317)
23 2f1n_A CDT B, cytolethal diste 99.3 2.3E-11 7.8E-16 91.9 11.3 58 18-82 130-192 (262)
24 1sr4_B CDT B, cytolethal diste 99.3 1.5E-11 5.2E-16 93.5 9.9 59 17-81 120-183 (261)
25 2a40_B Deoxyribonuclease-1; WA 99.3 4E-12 1.4E-16 97.0 5.2 117 28-181 127-260 (260)
26 4b8c_D Glucose-repressible alc 99.3 1.2E-12 4.2E-17 113.4 2.1 140 28-182 548-717 (727)
27 3ngq_A CCR4-NOT transcription 99.2 6.2E-11 2.1E-15 95.9 10.0 52 28-83 196-261 (398)
28 2imq_X Salivary nitrophorin; f 99.1 1.1E-10 3.6E-15 90.5 7.1 55 21-81 117-177 (282)
29 1i9z_A Synaptojanin, phosphati 98.9 2.1E-08 7.2E-13 79.7 13.8 34 146-182 282-315 (347)
30 2xsw_A 72 kDa inositol polypho 98.5 2.6E-06 9E-11 67.8 13.5 38 145-182 281-320 (357)
31 3mtc_A Type II inositol-1,4,5- 98.0 0.00017 5.7E-09 56.3 13.3 38 144-182 264-301 (313)
32 4a9c_A Phosphatidylinositol-3, 98.0 0.0002 7E-09 55.9 13.6 39 144-182 271-311 (316)
33 1z0n_A 5'-AMP-activated protei 30.4 21 0.0007 22.2 1.4 13 67-79 21-33 (96)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=3.8e-34 Score=220.16 Aligned_cols=177 Identities=41% Similarity=0.743 Sum_probs=152.9
Q ss_pred CceeeeCCCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhc-CCCCEEEEccCCccCC
Q 048138 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELE-KKKPVILTGDLNCAHQ 81 (182)
Q Consensus 3 ~~~~~~~~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~-~~~~~Ii~GDFN~~~~ 81 (182)
+..+..+++....+.+||++.++++.+.|+|+|+|++....++..+|+ +|++.|.++++++. .+.++|||||||+.+.
T Consensus 79 ~~~~~~~~~~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~~~~~~~r~-~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~ 157 (265)
T 3g91_A 79 PSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGAMSEERLKYKL-EFYDAFLEDVNRERDSGRNVIICGDFNTAHR 157 (265)
T ss_dssp CSEEECCCSCHHHHSBSCEEEEECSSCEEEEEECCCCTTCHHHHHHHH-HHHHHHHHHHHHHHHTTCCEEEEEECCCCCS
T ss_pred hHHhccCCCCcccCCcCCEEEEEeCCEEEEEEEecCCCCCchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEECccccCCc
Confidence 456666666666678999999999999999999999887767778887 88888999888864 3789999999999998
Q ss_pred CccccCCCCCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhccccc
Q 048138 82 EIDIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHD 161 (182)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~ 161 (182)
+.|..++..+.+..++.++++.++..++ +.||+|+|+..+|....||||+.++..++.+.++||||||+|+.+...+.+
T Consensus 158 ~~d~~~~~~~~~~~~~~~~~~~~~~~l~-~~gl~D~~r~~~p~~~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~~~~~ 236 (265)
T 3g91_A 158 EIDLARPKENSNVSGFLPVERAWIDKFI-ENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKR 236 (265)
T ss_dssp GGGBSCTGGGTTSTTSCHHHHHHHHHHH-HTTEEETHHHHCCCSCCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEEE
T ss_pred hhhccCHhhcCCCCccCHHHHHHHHHHH-hcCcEEeeHhhCCCCCCCCCcCCCCCccccCceEEEEEEEECHHHHhhhcE
Confidence 8888777666667788899998888655 899999999999988899999999887777788899999999999888999
Q ss_pred ceecCCCCCCCccceEEEEe
Q 048138 162 SYILPDVTGSDHSPIGLILK 181 (182)
Q Consensus 162 ~~i~~~~~~SDH~pv~~~l~ 181 (182)
+.|.+...+|||+||++++.
T Consensus 237 ~~i~~~~~~SDH~Pv~~~~~ 256 (265)
T 3g91_A 237 SWILSDVMGSDHCPIGLEIE 256 (265)
T ss_dssp EEECTTCCSSSBCCEEEEEE
T ss_pred EEEeCCCCCCCcceEEEEhh
Confidence 99998767999999999985
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=1.8e-32 Score=226.05 Aligned_cols=169 Identities=39% Similarity=0.689 Sum_probs=139.8
Q ss_pred CCCCCCCEEEEEe----------CcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhc------------------
Q 048138 14 DHDSEGRLVTAEF----------DSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELE------------------ 65 (182)
Q Consensus 14 ~~~~~gR~i~~~~----------~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~------------------ 65 (182)
..|.+||+|.+++ +.+.|+|+|+|+...+.+++.+|+.+|++.|.++++++.
T Consensus 265 ~~D~egR~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~ 344 (467)
T 2j63_A 265 AGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSG 344 (467)
T ss_dssp CCCTTCCEEEEEECSSCCC----CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------
T ss_pred ccCCCCcEEEEEEEeCCcccccCceEEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhccc
Confidence 3678999999998 579999999999876556777776457677777777653
Q ss_pred -CCCCEEEEccCCccCCCccccC---CCCCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCC-CCccccCCCCCCcCC
Q 048138 66 -KKKPVILTGDLNCAHQEIDIYN---PAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGV-VGYTYWGYRHGGRKT 140 (182)
Q Consensus 66 -~~~~~Ii~GDFN~~~~~~d~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~-~~~T~~~~~~~~~~~ 140 (182)
.+.++|||||||+.+.+.|..+ +..+.+..++.+++|.++.+.+...+|+|+|+.++|.. ..||||+++...+..
T Consensus 345 ~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~~~~~gf~~~er~~~~~lL~~~gL~DafR~~~p~~~~~yTw~s~r~~~~~~ 424 (467)
T 2j63_A 345 SSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRPR 424 (467)
T ss_dssp CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBCSCCSBCCTTTTTTTT
T ss_pred ccCCcEEEeccccCCCchhhhccccchhhcccccccCHHHHHHHHHHHhhCCCEEehHhhCCCCCCCccccCCCCCcccC
Confidence 3579999999999988877765 33344556888999999987777889999999999864 469999998877766
Q ss_pred CCcceeeEEEEChhhhcccccceecCCCCCCCccceEEEEeC
Q 048138 141 NRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 141 ~~~~rID~i~~s~~~~~~~~~~~i~~~~~~SDH~pv~~~l~l 182 (182)
+.+.||||||+++.+...+.++.|.....+|||+||+++|++
T Consensus 425 n~g~RIDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 425 NLGWRLDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp TCCBCCEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred CCCceeEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 778999999999999878999999887789999999999975
No 3
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.97 E-value=5e-30 Score=198.81 Aligned_cols=178 Identities=50% Similarity=0.901 Sum_probs=138.5
Q ss_pred CceeeeCCCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCC
Q 048138 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQE 82 (182)
Q Consensus 3 ~~~~~~~~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~ 82 (182)
++.+..+++....+.++|++.++++.+.|+|+|+|+...+.++..+|. +|++.|.+.++++....++|||||||+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~r~-~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~ 184 (285)
T 2o3h_A 106 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQ-RWDEAFRKFLKGLASRKPLVLCGDLNVAHEE 184 (285)
T ss_dssp CSEEEESCSCGGGSSBCCEEEEECSSCEEEEEECCCCCGGGTTHHHHH-HHHHHHHHHHHHHHTTSCEEEEEECSCCCSG
T ss_pred hHHeeeccCCcccCCCCcEEEEEeCCEEEEEEEcCCCCCcchhHHHHH-HHHHHHHHHHHhhccCCCEEEEEECCCCCch
Confidence 355666666555678899999999999999999998766544555665 7777888888876556899999999998877
Q ss_pred ccccCCCCCCCCCCCCHHHHHHH-HHhhhhCCceeceeccCCCCC-CccccCCCCCCcCCCCcceeeEEEEChhhhcccc
Q 048138 83 IDIYNPAGNRRSAGFTDEERQSF-GANFLSKGFVDTFRAQHRGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFH 160 (182)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~l~D~~~~~~~~~~-~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~ 160 (182)
.|..++..+.+..++..+++..+ ...+.. +|.|+|+..+|... .|||++.++..+..+.+.||||||+++.+...+.
T Consensus 185 ~D~~~~~~~~~~~g~~~~~~~~~~~~~l~~-~l~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~v~ 263 (285)
T 2o3h_A 185 IDLRNPKGNKKNAGFTPQERQGFGELLQAV-PLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC 263 (285)
T ss_dssp GGBSCTTTCTTSTTSCHHHHHHHHHHHHHT-TCEEHHHHHCTTCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGGGEE
T ss_pred hhccChhhcCCCCCcCHHHHHHHHHHHhcC-CCEEEEEecCCCCCCcEeEecCcCCccccCceeEEEEEEECHHHHhhhh
Confidence 77655554444567777788777 655554 99999998888655 4999988765433334579999999999877788
Q ss_pred cceecCCCCCCCccceEEEEeC
Q 048138 161 DSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 161 ~~~i~~~~~~SDH~pv~~~l~l 182 (182)
++.|......|||+||+++|++
T Consensus 264 ~~~v~~~~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 264 DSKIRSKALGSDHCPITLYLAL 285 (285)
T ss_dssp EEEECTTCCSSSBCCEEEEECC
T ss_pred heEeeccCCCCCeecEEEEecC
Confidence 8999876668999999999975
No 4
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.97 E-value=4.1e-30 Score=196.04 Aligned_cols=177 Identities=31% Similarity=0.574 Sum_probs=137.3
Q ss_pred eeeeCCCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHh-cCCCCEEEEccCCccCCCc
Q 048138 5 SVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKEL-EKKKPVILTGDLNCAHQEI 83 (182)
Q Consensus 5 ~~~~~~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~-~~~~~~Ii~GDFN~~~~~~ 83 (182)
.+..+++....+.++|++.++++.+.|+|+|+|+...+.++..+|. +|++.|.+.++++ ..+.++|+|||||+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~~~r~~~~~-~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~ 157 (259)
T 2jc5_A 79 NVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEERQQVKY-RFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNI 157 (259)
T ss_dssp EEEESCSCHHHHTTCCEEEEEETTEEEEEEECCCCTTCHHHHHHHH-HHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGG
T ss_pred eEEeCCCCCccCCCCeEEEEEcCCEEEEEEeccCCCCCcHHHHHHH-HHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchh
Confidence 3444554433456899999999999999999998876545555554 6777788877765 3578999999999998877
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccce
Q 048138 84 DIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSY 163 (182)
Q Consensus 84 d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~ 163 (182)
|...+..+....++.++++..+...+...+|.|+|+..+|...+|||++.++..+..+.+.||||||+++.+...+.++.
T Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~d~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~ 237 (259)
T 2jc5_A 158 DLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAH 237 (259)
T ss_dssp GBSCSTTCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTCCCCCEESCSSHHHHTTCEECCEEEEECHHHHTTEEEEE
T ss_pred hccChhhcCCCCCcCHHHHHHHHHHhccCCcEEeeHhhCCCCCCccEECCcCCCccCCCeeEEEEEEECHHHHhHHhhee
Confidence 77666555555677777777777666688999999988887777999988754333344579999999999877788899
Q ss_pred ecCCCCCCCccceEEEEeC
Q 048138 164 ILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 164 i~~~~~~SDH~pv~~~l~l 182 (182)
|......|||+||.++|++
T Consensus 238 v~~~~~~SDH~pv~~~l~~ 256 (259)
T 2jc5_A 238 VYKDEKFSDHAPLVVEYDY 256 (259)
T ss_dssp ECCSSCCSSBCCEEEEESC
T ss_pred ecCCCCCCCcccEEEEEec
Confidence 8866679999999999875
No 5
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.97 E-value=1.9e-29 Score=192.43 Aligned_cols=174 Identities=28% Similarity=0.536 Sum_probs=134.7
Q ss_pred eeeCCCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCC-CccchhhHHHHHHHHHHHHHHHh-cCCCCEEEEccCCccCCCc
Q 048138 6 VTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGD-GLRRLSYRITEWDPSLSSYVKEL-EKKKPVILTGDLNCAHQEI 83 (182)
Q Consensus 6 ~~~~~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~-~~~~~~~k~~~~~~~l~~~l~~~-~~~~~~Ii~GDFN~~~~~~ 83 (182)
+..+++....+ ++|++.++++.+.|+|+|+|+... +.++..+|. +|++.|.++++++ ..+.++|+|||||+.+.+.
T Consensus 77 ~~~~~~~~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~~r~-~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~ 154 (257)
T 2voa_A 77 VSFGLDSEPKD-EDRLIRAKIAGIDVINTYVPQGFKIDSEKYQYKL-QWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPI 154 (257)
T ss_dssp EEESCSSSSCC-GGGEEEEEETTEEEEEEECCCCSCTTSHHHHHHH-HHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGG
T ss_pred heecCCCCccc-cCcEEEEEECCEEEEEEEeCCCCCCCcHHHHHHH-HHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchh
Confidence 44566654455 899999999999999999998764 334455554 6777788888775 3578999999999998877
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCC-CCCCcCCCCcceeeEEEEChhhhcccccc
Q 048138 84 DIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGY-RHGGRKTNRGWRLDYFLVSQSLADKFHDS 162 (182)
Q Consensus 84 d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~-~~~~~~~~~~~rID~i~~s~~~~~~~~~~ 162 (182)
|..++..+.+..++..+++.++.. +.+.+|.|+|+..+|....|||++. ++..+..+.+.||||||+++.+...+.++
T Consensus 155 d~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~D~~~~~~p~~~~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~ 233 (257)
T 2voa_A 155 DVHSPDKLKNHVCFHEDARRAYKK-ILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDC 233 (257)
T ss_dssp GBSCGGGCTTSTTTCHHHHHHHHH-HHTTTCEEHHHHHSTTCCCCSBCCTTSTTTTTTTCCBCCEEEEECHHHHTTEEEE
T ss_pred hccChhHhCCCCCCCHHHHHHHHH-HHHcCcEeeehhhCCCCCCcceeccccCCceecCceEEEEEEEECHHHHhhhhee
Confidence 776555454556677777777765 4478999999988887778999988 66555445668999999999997778888
Q ss_pred eecCC----CCCCCccceEEEEeC
Q 048138 163 YILPD----VTGSDHSPIGLILKL 182 (182)
Q Consensus 163 ~i~~~----~~~SDH~pv~~~l~l 182 (182)
.|... ...|||+||.++|++
T Consensus 234 ~v~~~~~~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 234 YADIKPRLAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp EECCHHHHSSSCCSBCCEEEEECC
T ss_pred EeehhhccCCCCCCccCEEEEEeC
Confidence 88764 258999999999975
No 6
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.97 E-value=1.5e-30 Score=205.51 Aligned_cols=178 Identities=50% Similarity=0.904 Sum_probs=137.2
Q ss_pred CceeeeCCCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCC
Q 048138 3 PLSVTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQE 82 (182)
Q Consensus 3 ~~~~~~~~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~ 82 (182)
++.+..+++....+.++|++.++++.+.|+|+|+|+...+.++..+|. +|++.|.++++.+....++|||||||+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~~~~~~~r~-~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~ 217 (318)
T 1hd7_A 139 PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQ-RWDEAFRKFLKGLASRKPLVLCGDLNVAHEE 217 (318)
T ss_dssp CSEEEESCSCGGGSSSSCEEEEECSSCEEEEEECCCCCGGGTTHHHHH-HHHHHHHHHHHHHHHHSCEEEEEECSCCCSG
T ss_pred ceeEEecCCCcccCCCCcEEEEEcCCEEEEEEEcCCCCCccccHHHHH-HHHHHHHHHHHhcccCCCEEEEeeCCCCChh
Confidence 355666666666678899999999999999999998776544555565 7777888888775445899999999998877
Q ss_pred ccccCCCCCCCCCCCCHHHHHHH-HHhhhhCCceeceeccCCCCC-CccccCCCCCCcCCCCcceeeEEEEChhhhcccc
Q 048138 83 IDIYNPAGNRRSAGFTDEERQSF-GANFLSKGFVDTFRAQHRGVV-GYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFH 160 (182)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~l~D~~~~~~~~~~-~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~ 160 (182)
.|..++..+.+..++.++++.++ ..++ ..+|.|+|+..+|... .|||++.++..+..+.+.||||||+++.+...+.
T Consensus 218 ~D~~~~~~~~~~~g~~~~~~~~~~~~ll-~~~l~D~~r~~~p~~~~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~~v~ 296 (318)
T 1hd7_A 218 IDLRNPKGNKKNAGFTPQERQGFGELLQ-AVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC 296 (318)
T ss_dssp GGBSCHHHHTTSTTSCHHHHHHHHHHHH-HTTCEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGGGEE
T ss_pred hhccChhhcCCCCCcCHHHHHHHHHHHh-hCCCEEeehhhCCCCCCCcceECCcCCCcccCCceEEEEEEECHHHHhhhh
Confidence 77654443344567778888877 6544 4599999999888754 5999988764433345679999999999977788
Q ss_pred cceecCCCCCCCccceEEEEeC
Q 048138 161 DSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 161 ~~~i~~~~~~SDH~pv~~~l~l 182 (182)
++.|......|||+||+++|+|
T Consensus 297 ~~~v~~~~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 297 DSKIRSKALGSDHCPITLYLAL 318 (318)
T ss_dssp EEEECTTCCSSSBCCEEEEECC
T ss_pred heEeeccCCCCCccCEEEEecC
Confidence 8998876668999999999975
No 7
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.96 E-value=5.5e-29 Score=189.49 Aligned_cols=175 Identities=26% Similarity=0.452 Sum_probs=133.5
Q ss_pred eeeCCCCCCCCCCCCEEEEEeCcEEEEEEEeeCCCC-CccchhhHHHHHHHHHHHHHHHh-cCCCCEEEEccCCccCCCc
Q 048138 6 VTYGLGISDHDSEGRLVTAEFDSFFLLSCYVPNSGD-GLRRLSYRITEWDPSLSSYVKEL-EKKKPVILTGDLNCAHQEI 83 (182)
Q Consensus 6 ~~~~~~~~~~~~~gR~i~~~~~~~~i~nvy~p~~~~-~~~~~~~k~~~~~~~l~~~l~~~-~~~~~~Ii~GDFN~~~~~~ 83 (182)
+..+++....+.++|++.++++.+.|+|+|+|+... +.++..+|. ++.+.|.+.++++ ..+.++|||||||+.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~r~-~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~ 154 (256)
T 2jc4_A 76 VHFGLPALPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKYKE-QWFAALTEFVRDEMTRHGKLVLLGDFNIAPADA 154 (256)
T ss_dssp EEESCTTSTTCCSCCEEEEEETTEEEEEEECCCCCSTTSHHHHHHH-HHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGG
T ss_pred heecCCCCccCCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHHHHH-HHHHHHHHHHHHHhcCCCCEEEEeECCCCCchh
Confidence 444565544567899999999999999999998765 233445554 6777788888775 4688999999999988776
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccce
Q 048138 84 DIYNPAGNRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSY 163 (182)
Q Consensus 84 d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~ 163 (182)
|..++..+.+..++.++++..+.. +.+.+|.|+|+..+|....|||++.++..++.+.+.||||||+++.+...+.++.
T Consensus 155 d~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~ 233 (256)
T 2jc4_A 155 DCYDPEKWHEKIHCSSVERQWFQN-LLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVR 233 (256)
T ss_dssp GBSSGGGGTTCTTSCHHHHHHHHH-HHTTTCEEHHHHHCCSSCCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEE
T ss_pred hccChhHhCCCCCcCHHHHHHHHH-HHhcCcEEhhhhhCCCCCceeeEcCCCCccccCcEEEEEEEEECHHHHhheeEEE
Confidence 665544444455677777777764 4478999999988887677999987765443345679999999999876688888
Q ss_pred ecCC----CCCCCccceEEEEeC
Q 048138 164 ILPD----VTGSDHSPIGLILKL 182 (182)
Q Consensus 164 i~~~----~~~SDH~pv~~~l~l 182 (182)
|... ...|||+||+++|++
T Consensus 234 v~~~~~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 234 VDLETRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp ECHHHHTSSSCCSBCCEEEEECC
T ss_pred EEhhcccCCCCCCcccEEEEecC
Confidence 8763 368999999999975
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.94 E-value=6.3e-27 Score=179.19 Aligned_cols=176 Identities=27% Similarity=0.476 Sum_probs=126.7
Q ss_pred ceeeeCCCCCCCCCCCCEEEEEe----CcEEEEEEEeeCCCCCc--cchhhHHHHHHHHHHHHHHHh-cCCCCEEEEccC
Q 048138 4 LSVTYGLGISDHDSEGRLVTAEF----DSFFLLSCYVPNSGDGL--RRLSYRITEWDPSLSSYVKEL-EKKKPVILTGDL 76 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~gR~i~~~~----~~~~i~nvy~p~~~~~~--~~~~~k~~~~~~~l~~~l~~~-~~~~~~Ii~GDF 76 (182)
..+..+++....+.+++++.+++ +.+.|+|+|+|+..... ++...|. ++++.|.+.++++ ..+.++|+||||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~-~~~~~l~~~~~~~~~~~~~~Il~GDF 152 (268)
T 1ako_A 74 IAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKA-QFYQNLQNYLETELKRDNPVLIMGDM 152 (268)
T ss_dssp SEEEESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHH-HHHHHHHHHHHHHCCTTSCEEEEEEC
T ss_pred ceeeeCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHH-HHHHHHHHHHHHhhhCCCCEEEEeEC
Confidence 34555555433355789999887 37999999999876432 2334454 6777788888875 467899999999
Q ss_pred CccCCCccccCCCCC------CCCCCCCHHHHHHHHHhhhhCCceeceeccCCCC-CCccccCCCCCCcCCCCcceeeEE
Q 048138 77 NCAHQEIDIYNPAGN------RRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGV-VGYTYWGYRHGGRKTNRGWRLDYF 149 (182)
Q Consensus 77 N~~~~~~d~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~-~~~T~~~~~~~~~~~~~~~rID~i 149 (182)
|+.+.+.|......+ .+..++.++++..+. .+.+.+|.|+|+..+|.. ..|||++.++..++.+.+.|||||
T Consensus 153 N~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~l~~~gl~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~riD~i 231 (268)
T 1ako_A 153 NISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMD-RLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLL 231 (268)
T ss_dssp CCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHH-HHHHTTEEEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEE
T ss_pred CCCCchhcccCcccChhhhccCCCcCcCHHHHHHHH-HHhcCCCEEeEhhhCCCCCCCeeEeCCcCCccccCceEEEEEE
Confidence 998876665321100 023456677777665 466789999999988864 469999887655543456799999
Q ss_pred EEChhhhcccccceecCC----CCCCCccceEEEEe
Q 048138 150 LVSQSLADKFHDSYILPD----VTGSDHSPIGLILK 181 (182)
Q Consensus 150 ~~s~~~~~~~~~~~i~~~----~~~SDH~pv~~~l~ 181 (182)
|+++.+...+.++.|... ...|||+||+++|+
T Consensus 232 l~s~~~~~~~~~~~i~~~~~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 232 LASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp EEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred EeCHHHHHHHHhceechhhcCCCCCCCcccEEEEcc
Confidence 999998766777877653 25899999999986
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.92 E-value=3.7e-25 Score=166.45 Aligned_cols=143 Identities=22% Similarity=0.362 Sum_probs=108.4
Q ss_pred CCCCCEEEEEe----CcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCC
Q 048138 16 DSEGRLVTAEF----DSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGN 91 (182)
Q Consensus 16 ~~~gR~i~~~~----~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~ 91 (182)
+.++|++.+++ +.+.|+|+|+|+.... +|.+.+.+.+.+. .+.++|+|||||+.+.+.|...
T Consensus 92 ~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~~---------~~~~~l~~~l~~~-~~~~~Il~GDFN~~~~~~~~~~---- 157 (238)
T 1vyb_A 92 DKEGHYIMVKGSIQQEELTILNIYAPNTGAP---------RFIKQVLSDLQRD-LDSHTLIMGDFNTPLSTLDRST---- 157 (238)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEEECCSSSHH---------HHHHHHHHHTTTT-CCTTEEEEEECSSCSSGGGBTT----
T ss_pred cCCCcEEEEEEEeCCCcEEEEEEecCCCCcH---------HHHHHHHHHHHhc-cCCCEEEEccCCCCCCccccCC----
Confidence 46899998876 3799999999986531 3444455555443 3689999999999877655432
Q ss_pred CCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCCCCC
Q 048138 92 RRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGS 171 (182)
Q Consensus 92 ~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~~~S 171 (182)
.+....++..+.+.+.+.+|.|+|+..+|....|||++.++.. ..||||||+++.+...+.++.+.+. ..|
T Consensus 158 ---~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~T~~~~~~~~-----~~rID~i~~s~~~~~~~~~~~v~~~-~~S 228 (238)
T 1vyb_A 158 ---RQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHT-----YSKIDHIVGSKALLSKCKRTEIITN-YLS 228 (238)
T ss_dssp ---CCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTTTE-----EECCEEEEEEGGGGGGEEEEEEECC-SSS
T ss_pred ---CCCCcHHHHHHHHHHhhCCCEEhhHhhCCCCCceeEEcCCCCc-----ccceEEEEeCHHHHhhhhhceeecC-CCC
Confidence 1233455666776677889999999988877789999876543 3599999999998777888888874 699
Q ss_pred CccceEEEEe
Q 048138 172 DHSPIGLILK 181 (182)
Q Consensus 172 DH~pv~~~l~ 181 (182)
||+||.++|+
T Consensus 229 DH~pv~~~l~ 238 (238)
T 1vyb_A 229 DHSAIKLELR 238 (238)
T ss_dssp SSCEEEEEEC
T ss_pred CcccEEEEeC
Confidence 9999999984
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.87 E-value=3e-22 Score=152.34 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=92.2
Q ss_pred CCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCCCCCCC
Q 048138 17 SEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAG 96 (182)
Q Consensus 17 ~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~ 96 (182)
..++++.++++.++|+|+|+|++... .+++ +|++.| +..+ .+.++|||||||+.+..++ . .....+
T Consensus 78 ~~~~~i~i~~~~i~i~svY~P~~~~~----~~~~-~~l~~l---~~~~-~~~~~Ii~GDfN~~~~~w~---~--~~~~~~ 143 (240)
T 2ei9_A 78 THITVVHIGGWDLYMVSAYFQYSDPI----DPYL-HRLGNI---LDRL-RGARVVICADTNAHSPLWH---S--LPRHYV 143 (240)
T ss_dssp SSEEEEEETTTTEEEEEEECCTTSCS----HHHH-HHHHHH---HHHT-TTSCEEEEEECCCCCGGGT---C--CHHHHS
T ss_pred CCEEEEEEeeccEEEEEEEcCCCCch----hHHH-HHHHHH---HHhc-CCCcEEEEEeccccccccc---C--CCCCCC
Confidence 44567777778999999999997652 2333 444443 3322 3579999999999875321 1 110113
Q ss_pred CCHHHHHHHHHhhhhCCceecee--ccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCCCCCCcc
Q 048138 97 FTDEERQSFGANFLSKGFVDTFR--AQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHS 174 (182)
Q Consensus 97 ~~~~~~~~l~~~l~~~~l~D~~~--~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~~~SDH~ 174 (182)
..+.+|....+.|. ++.|.++ ..++....||||++++ ++||||+|+|+.+.. .++.+.. ..+|||+
T Consensus 144 ~~~~~r~~~~~~l~--~~~d~~~l~~~~~~~~~~T~~s~~~-------~~rID~~l~s~~l~~--~~~~i~~-~~~SDH~ 211 (240)
T 2ei9_A 144 GRGQEVADRRAKME--DFIGARRLVVHNADGHLPTFSTANG-------ESYVDVTLSTRGVRV--SEWRVTN-ESSSDHR 211 (240)
T ss_dssp SSCHHHHHHHHHHH--HHHHHTTCEECCCTTCCCSEEETTE-------EECCEEEEECTTCCE--EEEEECS-CCSSSBC
T ss_pred CcchhhHHHHHHHH--HHHHhcCCEecCCCCCCceEeCCCC-------ceEEEEEEecCcccc--CCeEECC-CCCCCcc
Confidence 34444544443443 5777766 3466556799998753 369999999999864 6667765 5799999
Q ss_pred ceEEEEe
Q 048138 175 PIGLILK 181 (182)
Q Consensus 175 pv~~~l~ 181 (182)
||.++|+
T Consensus 212 Pv~~~l~ 218 (240)
T 2ei9_A 212 LIVFGVG 218 (240)
T ss_dssp CEEEEEE
T ss_pred cEEEEEC
Confidence 9999986
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.85 E-value=1.9e-20 Score=142.13 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=90.6
Q ss_pred CEEEEEe----CcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCCCCCC
Q 048138 20 RLVTAEF----DSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSA 95 (182)
Q Consensus 20 R~i~~~~----~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~ 95 (182)
+.+.+.+ +.+.|+|+|+|+.... ..|.+.|.+.++.+ ...++|||||||+.+..++.
T Consensus 104 ~~~~~~i~~~~~~~~v~~vy~p~~~~~--------~~~~~~l~~~~~~~-~~~~~Ii~GDfN~~~~~~~~---------- 164 (245)
T 1wdu_A 104 NIVVVGIRTRAWEITLVSYYFEPDKPI--------ESYLEQIKRVERKM-GPKRLIFGGDANAKSTWWGS---------- 164 (245)
T ss_dssp SEEEEEEECSSCEEEEEEEECCTTSCS--------HHHHHHHHHHHHTT-CSSSEEEEEECCCCCGGGTC----------
T ss_pred CEEEEEEEcCCCcEEEEEEEeCCCCCH--------HHHHHHHHHHHHHh-CCCcEEEEeccccCcccCCC----------
Confidence 4444444 3799999999986531 14556666666654 46799999999997643221
Q ss_pred CCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCCCCCCccc
Q 048138 96 GFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDVTGSDHSP 175 (182)
Q Consensus 96 ~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~~~SDH~p 175 (182)
....+++..+.+.+...++.. .++ ...+||++.+++. ..++||||||+++.+...+.++.|......|||+|
T Consensus 165 ~~~~~~~~~l~~~~~~~~l~~----~~~-~~~~T~~~~~~~~---~~~~rID~i~~s~~~~~~v~~~~v~~~~~~SDH~P 236 (245)
T 1wdu_A 165 KEDDARGDQLMGTLGELGLHI----LNE-GDVPTFDTIRGGK---RYQSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNG 236 (245)
T ss_dssp SSCCHHHHHHHHHHHHHTCEE----CCC-SCCCSEEC--------CCEECCEEEEECGGGBTTEEEEEECTTSSSSSBCC
T ss_pred CCcCcchHHHHHHHHHCCcEE----ecC-CCCCcEECCCCCC---CCCCEEEEEEeChHHHhhccceEEcCCCCCCCccc
Confidence 011234445555566666643 333 3458999876531 12579999999999877788899887667999999
Q ss_pred eEEEEeC
Q 048138 176 IGLILKL 182 (182)
Q Consensus 176 v~~~l~l 182 (182)
|.++|++
T Consensus 237 v~~~l~l 243 (245)
T 1wdu_A 237 MVFNIRL 243 (245)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 9999875
No 12
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.78 E-value=8.4e-19 Score=133.71 Aligned_cols=136 Identities=21% Similarity=0.274 Sum_probs=87.9
Q ss_pred CCCEEEEEe----CcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCCCC
Q 048138 18 EGRLVTAEF----DSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRR 93 (182)
Q Consensus 18 ~gR~i~~~~----~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~ 93 (182)
.++++.+++ +.+.|+|+|++....+.+ .|. . ++...++.+..+.++|+|||||+.+...
T Consensus 122 ~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~---~r~-~---q~~~l~~~~~~~~~~il~GDfN~~~~~~---------- 184 (266)
T 3teb_A 122 ARRIVSITINYEGQDIEFYSCHMNLPNCETE---DMG-K---NIQTILNRTQNSNLKILMGDFNTDAIGN---------- 184 (266)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECCCTTCTTC---CHH-H---HHHHHHTSSCSCCEEEEEEECCCCTTTC----------
T ss_pred cceEEEEEEEeCCeEEEEEEecCCCccCChH---HHH-H---HHHHHHHHHhcCCcEEEEeECCCCCCCC----------
Confidence 355666766 379999999987643211 111 1 2233333333478999999999976210
Q ss_pred CCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCCCcC-CCCcceeeEEEEChhhhcccccceecCC----C
Q 048138 94 SAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRK-TNRGWRLDYFLVSQSLADKFHDSYILPD----V 168 (182)
Q Consensus 94 ~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~-~~~~~rID~i~~s~~~~~~~~~~~i~~~----~ 168 (182)
...+. .+.+.+|.|+|+...+...++||.... ..+. ...+.||||||+++.+ .+..+.+... .
T Consensus 185 --------~~~~~-~l~~~~l~d~~~~~~~~~~~~t~~~~~-~~~~~~~~~~riD~i~~s~~~--~~~~~~v~~~~~~~~ 252 (266)
T 3teb_A 185 --------VAAYE-NILSQGLFDTYVMAEKKDDGITVDKSI-HGWDNDKAKKRLDYIFSNKEL--KVKESKVIFNNKNKE 252 (266)
T ss_dssp --------HHHHH-HHHTTTCEEHHHHCSEECCCCCEECC-------CTTEECCEEEEESSCC--CEEEEEEESSSSSSC
T ss_pred --------CcHHH-hhccccccchHHhhccccCCccccCcc-CCcCcCCcCCeeEEEEeCCCe--EEEEEEEEeCCCCCC
Confidence 11233 455678999999887766678874322 2222 1245699999999987 4777777653 3
Q ss_pred CCCCccceEEEEeC
Q 048138 169 TGSDHSPIGLILKL 182 (182)
Q Consensus 169 ~~SDH~pv~~~l~l 182 (182)
..|||+||.++|++
T Consensus 253 ~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 253 IVSDHFGIEVKIEF 266 (266)
T ss_dssp CCSSSCEEEEEECC
T ss_pred CcCCccCEEEEEEC
Confidence 57999999999975
No 13
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.77 E-value=1.7e-18 Score=138.93 Aligned_cols=133 Identities=20% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCEEEEEe--C--cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHH---hcCCCCEEEEccCCccCCCccccCCCCC
Q 048138 19 GRLVTAEF--D--SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKE---LEKKKPVILTGDLNCAHQEIDIYNPAGN 91 (182)
Q Consensus 19 gR~i~~~~--~--~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~---~~~~~~~Ii~GDFN~~~~~~d~~~~~~~ 91 (182)
.+++.+++ . .+.|+|+|+++.....+. |. ..+..+...+.. ..++.++|+|||||..+....
T Consensus 212 r~~l~~~i~~~g~~l~v~ntHL~s~~~~~~~---R~-~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~------- 280 (362)
T 4gew_A 212 RTLQILEGSIGGLKVFLLNTHLESTREHRPQ---RC-AQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVS------- 280 (362)
T ss_dssp CEEEEEEEEETTEEEEEEEEECCCSGGGHHH---HH-HHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCC-------
T ss_pred ceEEEEEEEECCEEEEEEEecCCccccchhH---HH-HHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccc-------
Confidence 34454554 2 799999999886543211 21 112233333333 245789999999998765321
Q ss_pred CCCCCCCHHHHHHHHHhhhhCCceeceeccCCC-CCCccccCCCCCCcCC--CCcceeeEEEEChhhhcccccceecC--
Q 048138 92 RRSAGFTDEERQSFGANFLSKGFVDTFRAQHRG-VVGYTYWGYRHGGRKT--NRGWRLDYFLVSQSLADKFHDSYILP-- 166 (182)
Q Consensus 92 ~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~-~~~~T~~~~~~~~~~~--~~~~rID~i~~s~~~~~~~~~~~i~~-- 166 (182)
....+|.|+|+...+. ...|||+..++..+.. ..+.||||||+++.+. ...+.+..
T Consensus 281 -----------------~~~~gl~Da~~~~~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l~--~~~~~vi~~~ 341 (362)
T 4gew_A 281 -----------------RVPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQ 341 (362)
T ss_dssp -----------------CCCTTCEEHHHHTTCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEESSCC--EEEEEEECCS
T ss_pred -----------------hhcchHHHHHHHhCCCCCCCcCcccccCcccccCCCCCcceEEEEEcCCcc--eeEEEEEeee
Confidence 1235789999887543 4679998776543321 2346899999999873 33333321
Q ss_pred -----CCCCCCccceEEEEe
Q 048138 167 -----DVTGSDHSPIGLILK 181 (182)
Q Consensus 167 -----~~~~SDH~pv~~~l~ 181 (182)
..++|||+||+++|.
T Consensus 342 ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 342 RIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp CCTTTSSCSCSSCEEEEEEE
T ss_pred ecCCCCCCCCcccCEEEEEc
Confidence 124799999999985
No 14
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.77 E-value=3.8e-18 Score=130.68 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=85.9
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHHHHHH
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGA 107 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 107 (182)
.+.|+|+|++.... ..|. +..+.+.+.++++..+.|+|||||||+.+.+. .+.
T Consensus 131 ~~~v~~~Hl~~~~~-----~~R~-~q~~~l~~~l~~~~~~~pvIl~GDfN~~~~~~--------------------~~~- 183 (267)
T 3g6s_A 131 IFMAVNTHFDHVGE-----EARR-QSALLIIRKIKEIVGERPAVVTGDFNVTDASD--------------------AYE- 183 (267)
T ss_dssp EEEEEEEECCSSCH-----HHHH-HHHHHHHHHHHHHTTTSCEEEEEECSSCTTSH--------------------HHH-
T ss_pred EEEEEEeCCCCCCH-----HHHH-HHHHHHHHHHHHhcCCCCEEEEeECCCCCCCH--------------------HHH-
Confidence 79999999976542 2232 34456777777765588999999999876431 122
Q ss_pred hhhhCC--ceeceeccCC-CCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCC---CCCCccceEEEEe
Q 048138 108 NFLSKG--FVDTFRAQHR-GVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDV---TGSDHSPIGLILK 181 (182)
Q Consensus 108 ~l~~~~--l~D~~~~~~~-~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~---~~SDH~pv~~~l~ 181 (182)
.+...+ |.|+|+.... ....+||.+..+.. ...+.||||||+++.+ .+..+.+.... ..|||+||.+++.
T Consensus 184 ~l~~~~~~l~d~~~~~~~~~~~~~T~~~~~~~~--~~~~~riD~I~~s~~~--~~~~~~v~~~~~~~~~SDH~PV~a~~~ 259 (267)
T 3g6s_A 184 TITTNEFVMKDAYKTAARVTGVDYTFHDFARIP--AEDCEKIDFIFVTPQV--LVKSCEIPAEVPEALLSDHNPQLADLE 259 (267)
T ss_dssp HHHSSSSCCEEHHHHCSEEEECSCSBCTTTTSC--GGGCCCCEEEEECTTS--EEEEEEECCCCSSSCCCSBCCEEEEEE
T ss_pred HhhcCCcchhhhHhhhccccCCCCCEeCCCCCC--CCCCCcEeEEEeCCCc--eEEEEEEecCCCCCCCCCcccEEEEEE
Confidence 455555 9999987652 33467887654321 1234699999999987 57777877654 4799999999986
No 15
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.75 E-value=6.4e-18 Score=127.64 Aligned_cols=133 Identities=19% Similarity=0.179 Sum_probs=81.2
Q ss_pred CCEEEEEe----CcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHH---hcCCCCEEEEccCCccCCCccccCCCCC
Q 048138 19 GRLVTAEF----DSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKE---LEKKKPVILTGDLNCAHQEIDIYNPAGN 91 (182)
Q Consensus 19 gR~i~~~~----~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~---~~~~~~~Ii~GDFN~~~~~~d~~~~~~~ 91 (182)
...+.+++ ..+.|+|+|+++.....+....++ +.+.+.+.. ..++.++|+|||||..+....
T Consensus 106 ~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~q~----~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~------- 174 (256)
T 4fva_A 106 RTLQILEGSIGGLKVFLLNTHLESTREHRPQRCAQF----GFCMDKVREIIAQNPGALVFFGGDLNLRDEEVS------- 174 (256)
T ss_dssp CEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHH----HHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCC-------
T ss_pred ceeEEEEEEeCCeEEEEEEecCCCCCcchHHHHHHH----HHHHHHhhhhhhccCCCcEEEeccCCCCcchhh-------
Confidence 34444544 279999999987654322211111 222333322 246789999999998754321
Q ss_pred CCCCCCCHHHHHHHHHhhhhCCceeceeccCCC-CCCccccCCCCCCcC--CCCcceeeEEEEChhhhcccccceecC--
Q 048138 92 RRSAGFTDEERQSFGANFLSKGFVDTFRAQHRG-VVGYTYWGYRHGGRK--TNRGWRLDYFLVSQSLADKFHDSYILP-- 166 (182)
Q Consensus 92 ~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~-~~~~T~~~~~~~~~~--~~~~~rID~i~~s~~~~~~~~~~~i~~-- 166 (182)
....++.|+|+...+. ...+||.+..+.... .....||||||+++.+ .+..+.+..
T Consensus 175 -----------------~~~~~~~d~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~--~~~~~~~~~~~ 235 (256)
T 4fva_A 175 -----------------RVPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL--DKVKFTLEGRQ 235 (256)
T ss_dssp -----------------CCCTTCEEHHHHTTCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEESSC--CEEEEEEECCS
T ss_pred -----------------hhhcchhhHHHHhCCCCCCCcccccccCcccccCCCCCcCeEEEEEcCCc--eeeEEEEEeeE
Confidence 1134688888877543 467898766543221 1234689999999977 344444321
Q ss_pred -----CCCCCCccceEEEEe
Q 048138 167 -----DVTGSDHSPIGLILK 181 (182)
Q Consensus 167 -----~~~~SDH~pv~~~l~ 181 (182)
..++|||+||+++|.
T Consensus 236 ~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 236 RIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp CCTTTCSCSCSSCEEEEEEE
T ss_pred ecCCCCCCcCcccCEEEEEc
Confidence 124699999999985
No 16
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.72 E-value=1.7e-17 Score=126.23 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=80.3
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHH-HhcCCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHHHHH
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVK-ELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFG 106 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~-~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~l~ 106 (182)
.+.|+|+|++..... .|. ...+.+.+.++ .+..+ |+|+|||||+.+.+. .+.
T Consensus 125 ~~~v~~~Hl~~~~~~-----~r~-~q~~~l~~~i~~~~~~~-pvil~GDfN~~~~~~--------------------~~~ 177 (257)
T 3l1w_A 125 PFLVINVHLDHISAH-----ARL-AGMTVILEELHDKIAQY-PTLLMGDFNAESGEE--------------------VHQ 177 (257)
T ss_dssp CEEEEEEECCSSCHH-----HHH-HHHHHHHHHTHHHHHHS-CEEEEEECCCCTTSH--------------------HHH
T ss_pred EEEEEEeCCCCCCHH-----HHH-HHHHHHHHHHHHHcCCC-CEEEEeeCCCCCCcH--------------------HHH
Confidence 799999999775321 222 33345666666 34334 999999999876421 122
Q ss_pred HhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCC----CCCCCccceEEEEeC
Q 048138 107 ANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPD----VTGSDHSPIGLILKL 182 (182)
Q Consensus 107 ~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~----~~~SDH~pv~~~l~l 182 (182)
.+. .++.|+|+...+....+||.+.... .+.+.+.||||||+ +.+ .+..+.+... ...|||+||.++|++
T Consensus 178 -~l~-~~l~d~~~~~~~~~~~~t~~~~~~~-~~~~~~~riD~i~~-~~~--~~~~~~v~~~~~~~~~~SDH~pv~~~l~~ 251 (257)
T 3l1w_A 178 -LVQ-KKFQDSKNLATHYGPRGTFQNFTYT-KPWAELEEIDYIYV-KGW--QVQQTASLTDSIDGRFPSDHFPLEAEVAG 251 (257)
T ss_dssp -HHT-TTCEEGGGTSEEESCSCCBCTTCTT-CCGGGCBCCEEEEE-ESE--EEEEEEECCCCBTTBCSSSBCCEEEEEEE
T ss_pred -Hhh-hhccchhhhhcccCCCCcccCCccc-CCCCCCCceeEEEE-CCc--EEEEEEEeccCcCCcccCCcceEEEEEEE
Confidence 233 3899999877654556777654321 11123469999999 666 5677777654 257999999999874
No 17
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.71 E-value=4.4e-17 Score=126.68 Aligned_cols=137 Identities=13% Similarity=0.079 Sum_probs=80.1
Q ss_pred CEEEEEeC----cEEEEEEEeeCCCCC---ccchhhHHHHHHHHHHHHHHHh--cCCCCEEEEccCCccCCCccccCCCC
Q 048138 20 RLVTAEFD----SFFLLSCYVPNSGDG---LRRLSYRITEWDPSLSSYVKEL--EKKKPVILTGDLNCAHQEIDIYNPAG 90 (182)
Q Consensus 20 R~i~~~~~----~~~i~nvy~p~~~~~---~~~~~~k~~~~~~~l~~~l~~~--~~~~~~Ii~GDFN~~~~~~d~~~~~~ 90 (182)
.++.+++. .+.|+|+|+++.... ......|. ...+.|.+++++. ..+.++|||||||+.+.+.
T Consensus 132 ~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~-~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~------- 203 (301)
T 1zwx_A 132 GFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRA-EQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTD------- 203 (301)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHH-HHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSH-------
T ss_pred CeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHH-HHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcH-------
Confidence 36667662 799999999876432 11233343 4456677777764 3468999999999986532
Q ss_pred CCCCCCCCHHHHHHHHHhhhhCCce--eceeccCCCCCCccccCCCC----CCcCCCCcceeeEEEEChhhhccc-----
Q 048138 91 NRRSAGFTDEERQSFGANFLSKGFV--DTFRAQHRGVVGYTYWGYRH----GGRKTNRGWRLDYFLVSQSLADKF----- 159 (182)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~l~--D~~~~~~~~~~~~T~~~~~~----~~~~~~~~~rID~i~~s~~~~~~~----- 159 (182)
.+..++..+++. |+|+ ...+||....+ ..++...+.||||||+++......
T Consensus 204 -------------~~~~l~~~~~~~~~d~~~-----g~~~T~~~~~n~~~~~t~~~~~~~rID~I~~~~~~~~~~~~~~~ 265 (301)
T 1zwx_A 204 -------------EYHDMLKLLNVSSPANFN-----GQMATWDPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNK 265 (301)
T ss_dssp -------------HHHHHHHHHTBCCCTTCC-----TTSCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSCCCSCEEEE
T ss_pred -------------HHHHHHHHcCCCCCcccc-----CCCceECCccCccccccCCCCCcceEeEEEEeCCCCCcccccce
Confidence 122233344555 6665 23456632111 011112346999999998753210
Q ss_pred ------ccceec-----CC-CCCCCccceEEEEeC
Q 048138 160 ------HDSYIL-----PD-VTGSDHSPIGLILKL 182 (182)
Q Consensus 160 ------~~~~i~-----~~-~~~SDH~pv~~~l~l 182 (182)
....+. .. ...|||+||+++|++
T Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 266 VLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTDN 300 (301)
T ss_dssp ECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC-
T ss_pred eeccccccceeecccCCccccCCCCCccEEEEEec
Confidence 011211 11 358999999999874
No 18
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=4.6e-17 Score=126.92 Aligned_cols=122 Identities=29% Similarity=0.413 Sum_probs=80.4
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhc--CCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHHHH
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELE--KKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSF 105 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~--~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~l 105 (182)
.+.|+|+|++.... ..|. +..+.+.+.++++. .+.|+|||||||+.+.+. .+
T Consensus 135 ~~~v~~~Hl~~~~~-----~~R~-~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~--------------------~~ 188 (298)
T 3mpr_A 135 EFLFFNLHMDHIGK-----KARV-ESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQ--------------------SY 188 (298)
T ss_dssp EEEEEEEECCSSCH-----HHHH-HHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSH--------------------HH
T ss_pred EEEEEEecCCCCCH-----HHHH-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCH--------------------HH
Confidence 79999999985432 2232 33455677777754 578999999999876521 12
Q ss_pred HHhhhhCC-ceeceeccCC-CCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceecCCC---------------
Q 048138 106 GANFLSKG-FVDTFRAQHR-GVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYILPDV--------------- 168 (182)
Q Consensus 106 ~~~l~~~~-l~D~~~~~~~-~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~--------------- 168 (182)
. .|...+ |.|+|..... ....+||....... ....||||||+++.+ .+.++.++...
T Consensus 189 ~-~l~~~g~l~D~~~~~~~~~~~~~T~~~~~~~~---~~~~rID~Il~s~~~--~v~~~~v~~~~~~~~~~~~~~~~~~~ 262 (298)
T 3mpr_A 189 D-AFVSKGVLCDSYEKCDYRYALNGTFNNFDPNS---FTESRIDHIFVSPSF--HVKRYGVLTDTYRSVRENSKKEDVRD 262 (298)
T ss_dssp H-HHHTTSSSEEHHHHCSEEECSSCSBCTTCTTC---CCSCCCEEEEECTTS--EEEEEEECCCCEEEECC---------
T ss_pred H-HHhcCCcchhhHhhhcccCCCCCCccCCCCCC---CCCceEEEEEeCCCe--eEEEEEEecCccccCCCcccccCccc
Confidence 2 344444 9999876642 23456776543211 124699999999987 55666654321
Q ss_pred -------------CCCCccceEEEEe
Q 048138 169 -------------TGSDHSPIGLILK 181 (182)
Q Consensus 169 -------------~~SDH~pv~~~l~ 181 (182)
..|||+||++++.
T Consensus 263 ~~~~~~~~~~~~~~~SDH~PV~v~~~ 288 (298)
T 3mpr_A 263 CPEEITIKAYEARTPSDHFPVKVELV 288 (298)
T ss_dssp -------CCEEEECSSSBCCEEEEEE
T ss_pred chhhhccChhhcccCCCCCcEEEEEe
Confidence 3599999999975
No 19
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.70 E-value=1.5e-17 Score=125.40 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=78.5
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHHHHHH
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGA 107 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 107 (182)
.+.|+|+|+++..... ..+. .....+.+.+++...+.|+|+|||||+.+.+.+. .
T Consensus 115 ~~~v~~~Hl~~~~~~~---~~~~-~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~---------------------~ 169 (256)
T 4gz1_A 115 EFCLMTSHLESTREHS---AERI-RQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIK---------------------C 169 (256)
T ss_dssp EEEEEECBCCCSGGGH---HHHH-HHHHHHHHHHHHSCTTSEEEEEEECCCCHHHHHH---------------------H
T ss_pred EEEEEeecccccccch---hhhh-HHHHHHhhhhhhccCcceEEEeCccCCCcchhhh---------------------h
Confidence 7999999998765432 1121 2334456666665567899999999986542211 1
Q ss_pred hhhhCCceeceeccCCC-CCCccccCCCCC--CcCCCCcceeeEEEEChhhhc-ccccceec------CCCCCCCccceE
Q 048138 108 NFLSKGFVDTFRAQHRG-VVGYTYWGYRHG--GRKTNRGWRLDYFLVSQSLAD-KFHDSYIL------PDVTGSDHSPIG 177 (182)
Q Consensus 108 ~l~~~~l~D~~~~~~~~-~~~~T~~~~~~~--~~~~~~~~rID~i~~s~~~~~-~~~~~~i~------~~~~~SDH~pv~ 177 (182)
.....++.|+|+..... ...+||...... .+....+.||||||+++.... ....+.+. ...++|||+||+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~ 249 (256)
T 4gz1_A 170 GGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLL 249 (256)
T ss_dssp TCSCTTEEEHHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEE
T ss_pred hhccchhhhHHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEE
Confidence 23456777887766443 344555443322 223345679999999876431 22233332 123479999999
Q ss_pred EEEeC
Q 048138 178 LILKL 182 (182)
Q Consensus 178 ~~l~l 182 (182)
++|++
T Consensus 250 a~~~i 254 (256)
T 4gz1_A 250 CTLNV 254 (256)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99975
No 20
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.70 E-value=2.5e-17 Score=122.96 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=76.4
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHHHHHH
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGA 107 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 107 (182)
.+.++++|++...... ..+. ..++.+.+.+++.....|+|+|||||+.+.+.+..
T Consensus 109 ~~~v~~~hl~~~~~~~---~~r~-~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~~--------------------- 163 (250)
T 4f1h_A 109 KLYLMTSHLESCKNQS---QERT-KQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANV--------------------- 163 (250)
T ss_dssp EEEEEECBCCCSGGGH---HHHH-HHHHHHHHHHHHSCTTEEEEEEEECCCCHHHHHTT---------------------
T ss_pred EEEEeccccccccccH---HHHH-HHHHHHHHHHHhcCCCCCEEEEEecCCCCcchhhh---------------------
Confidence 7999999998765432 1222 33455666676655677999999999875432211
Q ss_pred hhhhCCceeceeccCCCC-CCccccCCCCC--CcCCCCcceeeEEEEChhhhcccc---cceec------CCCCCCCccc
Q 048138 108 NFLSKGFVDTFRAQHRGV-VGYTYWGYRHG--GRKTNRGWRLDYFLVSQSLADKFH---DSYIL------PDVTGSDHSP 175 (182)
Q Consensus 108 ~l~~~~l~D~~~~~~~~~-~~~T~~~~~~~--~~~~~~~~rID~i~~s~~~~~~~~---~~~i~------~~~~~SDH~p 175 (182)
.....++.|+|+.+.+.. ..++|...... ......+.||||||+++....... ...+. ...++|||+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~p 243 (250)
T 4f1h_A 164 GGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHMALIGMEKLDCGRYTSDHWG 243 (250)
T ss_dssp TSSCTTEEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSCCCEEEEEEEECCSCCTTSSCSCSBCE
T ss_pred hhccccchHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEEEeCcccccceeeeEEEEecccccCCCCCCCcccC
Confidence 122345666666655433 33444332221 122234568999999986642221 11221 1224799999
Q ss_pred eEEEEeC
Q 048138 176 IGLILKL 182 (182)
Q Consensus 176 v~~~l~l 182 (182)
|+++|+.
T Consensus 244 v~a~f~T 250 (250)
T 4f1h_A 244 IYCTFNT 250 (250)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999974
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.66 E-value=7.8e-16 Score=119.74 Aligned_cols=144 Identities=14% Similarity=0.128 Sum_probs=80.0
Q ss_pred CEEEEEe----CcEEEEEEEeeCCCCC---ccchhhHHHHHHHHHHHHHHHh--cCCCCEEEEccCCccCCCccccCCCC
Q 048138 20 RLVTAEF----DSFFLLSCYVPNSGDG---LRRLSYRITEWDPSLSSYVKEL--EKKKPVILTGDLNCAHQEIDIYNPAG 90 (182)
Q Consensus 20 R~i~~~~----~~~~i~nvy~p~~~~~---~~~~~~k~~~~~~~l~~~l~~~--~~~~~~Ii~GDFN~~~~~~d~~~~~~ 90 (182)
.++.+++ +.+.|+|+|+++.... ......|. .+.+.|.+++++. +.+.++|||||||+.+...|..
T Consensus 132 ~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~-~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~---- 206 (306)
T 2ddr_A 132 GFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRT-NQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENN---- 206 (306)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCC-------CHHHHHH-HHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSC----
T ss_pred CeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHH-HHHHHHHHHHHHhcCCCCCEEEEEeeCCCCccccccc----
Confidence 3566666 2699999999876431 01223343 4456677777764 3467999999999987543321
Q ss_pred CCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCC----CcCCCCcceeeEEEEChhhhccc------c
Q 048138 91 NRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHG----GRKTNRGWRLDYFLVSQSLADKF------H 160 (182)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~----~~~~~~~~rID~i~~s~~~~~~~------~ 160 (182)
...+ +..++..+++.+. .+....+||...... .++.....||||||+++.+.... .
T Consensus 207 ------~s~~----~~~l~~~~~~~~~----~~~g~~~T~~~~~n~~~~~t~~~~~~~rID~I~~s~~~~~~~~~~~~~~ 272 (306)
T 2ddr_A 207 ------NDSE----YASMFKTLNASVP----SYTGHTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVL 272 (306)
T ss_dssp ------TTSH----HHHHHHHHTBCCC----EEEECSCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSCCCSEEEEEEC
T ss_pred ------CCHH----HHHHHHhcCCCCc----ccCCCCcccCCCCCccccccCCCCCcceeeEEEEeCCCCCcccccceee
Confidence 0111 2223334455542 112245777432110 11112356999999999764221 0
Q ss_pred -----cceec------CCCCCCCccceEEEEeC
Q 048138 161 -----DSYIL------PDVTGSDHSPIGLILKL 182 (182)
Q Consensus 161 -----~~~i~------~~~~~SDH~pv~~~l~l 182 (182)
.+.+. .....|||+||+++|++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 273 QPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM 305 (306)
T ss_dssp CCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC
T ss_pred ccccccceeccccccccccCCCCCcceeEEEEe
Confidence 01111 01358999999999975
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.55 E-value=4e-14 Score=111.40 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=66.8
Q ss_pred CEEEEEe----CcEEEEEEEeeCCCCC---ccchhhHHHHHHHHHHHHHHHh--cCCCCEEEEccCCccCCCccccCCCC
Q 048138 20 RLVTAEF----DSFFLLSCYVPNSGDG---LRRLSYRITEWDPSLSSYVKEL--EKKKPVILTGDLNCAHQEIDIYNPAG 90 (182)
Q Consensus 20 R~i~~~~----~~~~i~nvy~p~~~~~---~~~~~~k~~~~~~~l~~~l~~~--~~~~~~Ii~GDFN~~~~~~d~~~~~~ 90 (182)
.++.+++ +.+.|+|+|+++.... ......|. ...+.|.+++++. +.+.++|+|||||..+.+.
T Consensus 151 ~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~-~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s~------- 222 (317)
T 3i41_A 151 GFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRA-EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTP------- 222 (317)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHH-HHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSH-------
T ss_pred ceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHH-HHHHHHHHHHHHhccCCCCeEEEEeECCCCCCCH-------
Confidence 3455555 2799999999875432 11233343 4556677778774 3578999999999987532
Q ss_pred CCCCCCCCHHHHHHHHHhhhhCCceeceeccCCCCCCccccCCCCC----CcCCCCcceeeEEEEChhhh
Q 048138 91 NRRSAGFTDEERQSFGANFLSKGFVDTFRAQHRGVVGYTYWGYRHG----GRKTNRGWRLDYFLVSQSLA 156 (182)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~----~~~~~~~~rID~i~~s~~~~ 156 (182)
.+..++...++.|.-. ....+||.+..+. .++.+.+.||||||+++...
T Consensus 223 -------------~~~~l~~~l~l~~~~~----~g~~~t~d~~~n~~~~~~~p~~~~~rLDyIlvs~~~~ 275 (317)
T 3i41_A 223 -------------EFKDMLKNLNVNDVLY----AGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHK 275 (317)
T ss_dssp -------------HHHHHHHHHTBCCCEE----EECSCSBCTTTCHHHHHHCTTCCCBCCEEEEEBTTSC
T ss_pred -------------HHHHHHHhcCCCCccc----CCCCcccCCCCCccccccCCCCCCcceEEEEEeCCcC
Confidence 1222333455655411 1124666554331 22233456999999999874
No 23
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.31 E-value=2.3e-11 Score=91.90 Aligned_cols=58 Identities=7% Similarity=0.085 Sum_probs=41.9
Q ss_pred CCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhcCC-----CCEEEEccCCccCCC
Q 048138 18 EGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELEKK-----KPVILTGDLNCAHQE 82 (182)
Q Consensus 18 ~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~~~-----~~~Ii~GDFN~~~~~ 82 (182)
++.+|.++++.+.++|+|+-...... +. +..+.+.+++... +. .||||+||||..|++
T Consensus 130 ~Rp~lgiri~~~~ff~tHa~a~~g~d-a~-----a~v~~I~~~~~~~-~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 130 GRPLLGIRIGNDAFFTAHAIAMRNND-AP-----ALVEEVYNFFRDS-RDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp CCCEEEEEETTEEEEEEECCSSSSCS-HH-----HHHHHHHHHHHTC-SSHHHHTCEEEEEEECSSCHHH
T ss_pred CCceEEEEECCEEEEEEEecCCCCcc-HH-----HHHHHHHHHHhcC-cccccCCCcEEEEecCCCCCcc
Confidence 77888899999999999997764321 11 2344566666552 23 599999999998764
No 24
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.29 E-value=1.5e-11 Score=93.51 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=39.4
Q ss_pred CCCCEEEEEeCcEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHh--cCC---CCEEEEccCCccCC
Q 048138 17 SEGRLVTAEFDSFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKEL--EKK---KPVILTGDLNCAHQ 81 (182)
Q Consensus 17 ~~gR~i~~~~~~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~--~~~---~~~Ii~GDFN~~~~ 81 (182)
....++.++++.+.++++|+...... ++. ...+.|.+++... .++ .+||||||||..+.
T Consensus 120 ~~R~~l~i~i~g~~f~s~Hl~~~~~~-ea~-----~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~ 183 (261)
T 1sr4_B 120 QSRPAVGIRIGTDVFFTVHALATGGS-DAV-----SLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPA 183 (261)
T ss_dssp CCCCEEEEEETTEEEEEEECCTTTTT-THH-----HHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHH
T ss_pred cCcceEEEEECCeEEEEeCCCCCCCc-hHH-----HHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChh
Confidence 46678889999999999999776522 111 2233455555442 024 69999999998743
No 25
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.26 E-value=4e-12 Score=96.98 Aligned_cols=117 Identities=19% Similarity=0.082 Sum_probs=62.0
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHH---hcCCCCEEEEccCCccCCCccccCCCCCCCCCCCCHHHHHH
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKE---LEKKKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQS 104 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~---~~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~ 104 (182)
.+.|+|+|++..... ++ .+.|.+.++. ..+..++|||||||..+.......+. .
T Consensus 127 ~~~vi~~Hl~~~~~~--~q-------~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~--------------~ 183 (260)
T 2a40_B 127 EFAIVALHSAPSDAV--AE-------INSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWS--------------S 183 (260)
T ss_dssp EEEEEECCCCGGGHH--HH-------HHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGG--------------G
T ss_pred eEEEEEecCCCCCcH--HH-------HHHHHHHHHHHHHhCCCCCEEEEecCCCCCcccccchhh--------------h
Confidence 799999999864321 11 1233443332 23568999999999976511000000 0
Q ss_pred HHHhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcc-c--ccceecC-----------CCCC
Q 048138 105 FGANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADK-F--HDSYILP-----------DVTG 170 (182)
Q Consensus 105 l~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~-~--~~~~i~~-----------~~~~ 170 (182)
+. .+.+.+|.. ..+... .|..+ +. ..+|||||+++.+... + .++.|.. ....
T Consensus 184 l~-~~~~~~~~~----~~~~~~-~t~~~---~~-----~~~lD~I~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 249 (260)
T 2a40_B 184 IR-LRTSSTFQW----LIPDSA-DTTAT---ST-----NCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAI 249 (260)
T ss_dssp CH-HHHSTTEEE----SSCTTC-CCBSS---SC-----CCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHH
T ss_pred ee-eeccCCceE----cccCCC-CCccc---CC-----CCCcccEEEcchHhhhcccCCCCceeehHHhcCCCHHHHhhc
Confidence 10 122334422 111111 22221 11 2489999999986421 2 3455543 1136
Q ss_pred CCccceEEEEe
Q 048138 171 SDHSPIGLILK 181 (182)
Q Consensus 171 SDH~pv~~~l~ 181 (182)
|||+||+++|+
T Consensus 250 SDH~PV~~~l~ 260 (260)
T 2a40_B 250 SDHYPVEVTLT 260 (260)
T ss_dssp CSBCCEEEEBC
T ss_pred CCCCeEEEEeC
Confidence 99999999874
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=1.2e-12 Score=113.37 Aligned_cols=140 Identities=16% Similarity=0.081 Sum_probs=14.1
Q ss_pred cEEEEEEEeeCCCCC-ccchhhHHHHHHHHHHHHHHHh------------cCCCCEEEEccCCccCCCccccCCCCCCCC
Q 048138 28 SFFLLSCYVPNSGDG-LRRLSYRITEWDPSLSSYVKEL------------EKKKPVILTGDLNCAHQEIDIYNPAGNRRS 94 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~-~~~~~~k~~~~~~~l~~~l~~~------------~~~~~~Ii~GDFN~~~~~~d~~~~~~~~~~ 94 (182)
.+.|+|+|++..... ..|... ...+.+.++++ ..+.|+|+|||||+.+.+..+.--... ..
T Consensus 548 ~l~V~ntHL~~~p~~~~~R~~Q-----a~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~~~~~l~~~-~v 621 (727)
T 4b8c_D 548 TIWAVTTHLHWDPKFNDVKTFQ-----VGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTG-RV 621 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEeccccCCCCCchHHHH-----HHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCcceEeeecC-Cc
Confidence 689999999865321 111111 11233333332 136699999999998875322111000 00
Q ss_pred CCCCHHHHHHHH-----HhhhhCCceeceeccCCCCCCccccCCCCCCcCCCCcceeeEEEEChhhhcccccceec----
Q 048138 95 AGFTDEERQSFG-----ANFLSKGFVDTFRAQHRGVVGYTYWGYRHGGRKTNRGWRLDYFLVSQSLADKFHDSYIL---- 165 (182)
Q Consensus 95 ~~~~~~~~~~l~-----~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~---- 165 (182)
....+.+...+. .......+.++|... .+..||.+... ...+|||||+|++.........+.
T Consensus 622 ~~~~d~~~~~~~~~~~~~~~~~~~l~say~~~--~~~~~T~~~~~-------~~~~LDyI~~S~~~l~~~~~~~~~~~~~ 692 (727)
T 4b8c_D 622 QIHQEGNGRDFGYMSEKNFSHNLALKSSYNCI--GELPFTNFTPS-------FTDVIDYIWFSTHALRVRGLLGEVDPEY 692 (727)
T ss_dssp ------------------------------------CCCSBCCSS-------CCBCC-----------------CCCHHH
T ss_pred CcchhhccccccccccccccccccccchhhcC--CCCccccccCc-------cCCeeeeEEEcCCceeEeeccCCCCHHH
Confidence 000000000000 000112345555432 23446665432 124799999998653222111111
Q ss_pred --------CCCCCCCccceEEEEeC
Q 048138 166 --------PDVTGSDHSPIGLILKL 182 (182)
Q Consensus 166 --------~~~~~SDH~pv~~~l~l 182 (182)
...++|||+||+++|++
T Consensus 693 ~~~~~~~P~~~~pSDH~pV~a~f~l 717 (727)
T 4b8c_D 693 VSKFIGFPNDKFPSDHIPLLARFEF 717 (727)
T ss_dssp HTTCSSSSBTTBCSSBCC-------
T ss_pred hcccCCCCCCCCCCCceeEEEEEEE
Confidence 11247999999999874
No 27
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.21 E-value=6.2e-11 Score=95.86 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=32.3
Q ss_pred cEEEEEEEeeCCCCCccchhhHHHHHHHHHHHHHHHhc--------------CCCCEEEEccCCccCCCc
Q 048138 28 SFFLLSCYVPNSGDGLRRLSYRITEWDPSLSSYVKELE--------------KKKPVILTGDLNCAHQEI 83 (182)
Q Consensus 28 ~~~i~nvy~p~~~~~~~~~~~k~~~~~~~l~~~l~~~~--------------~~~~~Ii~GDFN~~~~~~ 83 (182)
.+.|+|+|+-..... ...|+ .....|.+.++++. ...|+|+|||||+.+.+.
T Consensus 196 ~l~V~nTHL~~~p~~---~~vRl-~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s~ 261 (398)
T 3ngq_A 196 LLIVANAHMHWDPEY---SDVKL-IQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSG 261 (398)
T ss_dssp EEEEEEEECCCCTTC---HHHHH-HHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTSH
T ss_pred EEEEEEeCcCCCCCC---HHHHH-HHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCCH
Confidence 499999999764332 12233 22234455555431 346899999999988753
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.12 E-value=1.1e-10 Score=90.51 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=33.9
Q ss_pred EEEEEe----CcEEEEEEEeeCCCCC--ccchhhHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCC
Q 048138 21 LVTAEF----DSFFLLSCYVPNSGDG--LRRLSYRITEWDPSLSSYVKELEKKKPVILTGDLNCAHQ 81 (182)
Q Consensus 21 ~i~~~~----~~~~i~nvy~p~~~~~--~~~~~~k~~~~~~~l~~~l~~~~~~~~~Ii~GDFN~~~~ 81 (182)
.+.+++ ..+.++|+|+.+.... .+...++ .+.+.++.+....++|++||||...+
T Consensus 117 av~~r~~~~~~~~~fvn~HL~~~~~~~~~R~~~~~------~I~~~~~~~~~~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 117 GIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYD------TRLDYSKKDDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp EEEEEEEETTEEEEEEEEECCTTCCCTTSSSSSCC------GGGCTTSSSSCCSEEEEEEECSCCBC
T ss_pred eEEEEEEECCEEEEEEEECCCCCCchHHHHHHHHH------HHHHhhhccCccceEEEecccccccC
Confidence 555655 2799999999987432 2222322 13332322335678999999997654
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=98.94 E-value=2.1e-08 Score=79.66 Aligned_cols=34 Identities=29% Similarity=0.275 Sum_probs=24.7
Q ss_pred eeEEEEChhhhcccccceecCCCCCCCccceEEEEeC
Q 048138 146 LDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 146 ID~i~~s~~~~~~~~~~~i~~~~~~SDH~pv~~~l~l 182 (182)
.|+||.++.+ +........ ...|||.||.+.|.+
T Consensus 282 cDRIL~~~~l--~~~~Y~~~~-~~~SDH~PV~a~f~~ 315 (347)
T 1i9z_A 282 TDRILYRGEL--VPHSYQSVP-LYYSDHRPIYATYEA 315 (347)
T ss_dssp CEEEEEESSC--EEEEEEECC-CCSSSBCCEEEEEEE
T ss_pred cceEEEeCCE--EEEEEEecC-ccCCCcCCceeEEEE
Confidence 3999998844 344444444 568999999998863
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.51 E-value=2.6e-06 Score=67.81 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=24.7
Q ss_pred eeeEEEEChhhhc--ccccceecCCCCCCCccceEEEEeC
Q 048138 145 RLDYFLVSQSLAD--KFHDSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 145 rID~i~~s~~~~~--~~~~~~i~~~~~~SDH~pv~~~l~l 182 (182)
-.|+||....-.. +........+...|||.||.+.|.+
T Consensus 281 WcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v 320 (357)
T 2xsw_A 281 YTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRV 320 (357)
T ss_dssp CCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEE
T ss_pred ccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEE
Confidence 4699999753211 2233333345678999999999863
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.01 E-value=0.00017 Score=56.27 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=24.2
Q ss_pred ceeeEEEEChhhhcccccceecCCCCCCCccceEEEEeC
Q 048138 144 WRLDYFLVSQSLADKFHDSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 144 ~rID~i~~s~~~~~~~~~~~i~~~~~~SDH~pv~~~l~l 182 (182)
+-.|+|+....-. ......-......|||.||.+.|.+
T Consensus 264 sWcDRIL~~~~~i-~~~~Y~s~~~~~~SDHrPV~a~f~~ 301 (313)
T 3mtc_A 264 AWCDRILWKGKNI-TQLSYQSHMALKTSDHKPVSSVFDI 301 (313)
T ss_dssp BCCEEEEEEESSE-EEEEEEECTTCCSSSSCCEEEEEEE
T ss_pred cccceEEEecCCe-EEEeeeeccCccCCCccCeEEEEEE
Confidence 4689999865321 1222222344568999999998863
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.00 E-value=0.0002 Score=55.88 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=24.2
Q ss_pred ceeeEEEEChhhhcccc--cceecCCCCCCCccceEEEEeC
Q 048138 144 WRLDYFLVSQSLADKFH--DSYILPDVTGSDHSPIGLILKL 182 (182)
Q Consensus 144 ~rID~i~~s~~~~~~~~--~~~i~~~~~~SDH~pv~~~l~l 182 (182)
+-.|+||....-...+. ...-..+...|||.||.+.|.+
T Consensus 271 aWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v 311 (316)
T 4a9c_A 271 SWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEV 311 (316)
T ss_dssp BCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEE
T ss_pred cccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEE
Confidence 45899998653211122 1222345678999999999863
No 33
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=30.38 E-value=21 Score=22.18 Aligned_cols=13 Identities=38% Similarity=0.445 Sum_probs=10.4
Q ss_pred CCCEEEEccCCcc
Q 048138 67 KKPVILTGDLNCA 79 (182)
Q Consensus 67 ~~~~Ii~GDFN~~ 79 (182)
...+-|+||||..
T Consensus 21 a~~V~v~GdFn~W 33 (96)
T 1z0n_A 21 GKEVYLSGSFNNW 33 (96)
T ss_dssp CSCEEEEEGGGTT
T ss_pred CcEEEEEEEeCCC
Confidence 4578899999964
Done!