BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048139
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
LE+ +V L+D ++++ DPYV L + ++ G P + E F+ + EG
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 71 ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQG 102
EL +++ T D+ +G I L +G
Sbjct: 72 ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGL 69
+ ITVV L K+ DPYV ++ G +K RTKT G NP ++E F
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNPVWEENFHFECHNSS 76
Query: 70 RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF 103
+ V V L D+ I S Q K S F
Sbjct: 77 DRIKVRV-----LDEDDDIKSRVKQRFKRESDDF 105
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
L++ V+ +L ++ + DP+ LE G+ + +T T NP + + F P+ +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDIHD 73
Query: 71 ELNVVVWNSHTLTPDEFIGSGRIQL 95
L V V++ P +F+G I L
Sbjct: 74 VLEVTVFDEDGDKPPDFLGKVAIPL 98
>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C
Epsilon
Length = 136
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 31 DPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGS 90
DPY+ L S+ +P + ++FV + G R++ + V++ + D+F+ +
Sbjct: 39 DPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVAN 97
Query: 91 GRIQLHKALSQG 102
IQ + L G
Sbjct: 98 CTIQFEELLQNG 109
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 11 LEITVVGCYNLDDKEWISRQDPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPL 65
L +TV NL + DPYV L+ SK +TKT NP + E F L
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQWNESFTFKL 77
Query: 66 --IEGLRELNVVVWNSHTLTPDEFIGS---GRIQLHKALSQGF 103
+ R L+V +W+ T ++F+GS G +L K + G+
Sbjct: 78 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGW 120
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 11 LEITVVGCYNLDDKEWISRQDPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPL 65
L +TV NL + DPYV L+ SK +TKT NP + E F L
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQWNESFTFKL 76
Query: 66 --IEGLRELNVVVWNSHTLTPDEFIGS---GRIQLHKALSQGF 103
+ R L+V +W+ T ++F+GS G +L K + G+
Sbjct: 77 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGW 119
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 11 LEITVVGCYNLDDKEWISRQDPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPL 65
L +TV NL + DPYV L+ SK +TKT NP + E F L
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQWNESFTFKL 78
Query: 66 --IEGLRELNVVVWNSHTLTPDEFIGS---GRIQLHKALSQGF 103
+ R L+V +W+ T ++F GS G +L K + G+
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGW 121
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 31 DPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPLIEGL--RELNVVVWNSHTLT 83
DPYV L+ SK +TKT NP + E F L E R L+V +W+ +
Sbjct: 53 DPYVKLKLIPDPKSESKQKTKTIK-CSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 84 PDEFIGS---GRIQLHKALSQGF 103
++F+GS G +L KA G+
Sbjct: 112 RNDFMGSLSFGISELQKAGVDGW 134
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 11 LEITVVGCYNLDDKEWISRQDPYVCLE-YGSSKYR------TKTCTDGGKNPTFQEKFVL 63
L + VV +L K+ DPYV L Y + + R TKT NP + E+F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIK-KTLNPKWNEEFYF 81
Query: 64 PLIEGLRELNVVVWNSHTLTPDEFIGSGRIQL 95
+ L V++ + LT D+F+G + L
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPL 113
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 31 DPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPLIEGL--RELNVVVWNSHTLT 83
DPYV L+ SK +TKT NP + E F L E R L+V +W+ +
Sbjct: 194 DPYVKLKLIPDPKSESKQKTKT-IKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 84 PDEFIGS---GRIQLHKA 98
++F+GS G +L KA
Sbjct: 253 RNDFMGSLSFGISELQKA 270
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 29 RQDPYVCLEYGSSKYRTKTCTDGGKNPTFQ---EKFVLPLIEGLRELNVVVWNSHTLTPD 85
+ +PY + GS Y T+T D NP + + F+ L + + L + +++ +PD
Sbjct: 407 KSNPYCEISMGSQSYTTRTIQDTL-NPKWNFNCQFFIKDLYQDV--LCLTLFDRDQFSPD 463
Query: 86 EFIGSGRIQLHK 97
+F+G I + K
Sbjct: 464 DFLGRTEIPVAK 475
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQEKFVLP 64
+ + V+ L K+ + DPYV + + +TKT NP + E+ +
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILFR 68
Query: 65 LIEGLRELNVVVWNSHTLTPDEFIGSGRIQLH 96
++ + V++ + LT D+F+G + L+
Sbjct: 69 VLPQRHRILFEVFDENRLTRDDFLGQVDVPLY 100
>pdb|1V4A|A Chain A, Structure Of The N-Terminal Domain Of Escherichia Coli
Glutamine Synthetase Adenylyltransferase
Length = 440
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 51 GGKNPTFQEKFVLPLIEGLRELNVVVWN 78
GG+ P+ Q + +LP + + EL+++ N
Sbjct: 338 GGREPSLQSRSLLPTLSAIAELHLLSEN 365
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 56 TFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGS 90
TF + V P +E + LN VW +HTL D S
Sbjct: 216 TFGKMMVTP-VELHKRLNTKVWQAHTLAWDTIFKS 249
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQEKFVLP 64
+ + V+ L K+ + DPYV + + +TKT NP + E+ +
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKS-LNPKWNEEILFR 80
Query: 65 LIEGLRELNVVVWNSHTLTPDEFIGSGRIQLH 96
+ L V++ + LT D+F+G + L+
Sbjct: 81 VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLY 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,981,829
Number of Sequences: 62578
Number of extensions: 158629
Number of successful extensions: 307
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 18
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)