Query 048139
Match_columns 115
No_of_seqs 108 out of 1041
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:39:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 100.0 9E-27 2E-31 135.5 13.9 106 8-114 1-107 (121)
2 cd08682 C2_Rab11-FIP_classI C2 99.9 4.9E-25 1.1E-29 129.5 13.2 103 11-114 1-111 (126)
3 cd08379 C2D_MCTP_PRT_plant C2 99.9 4.9E-25 1.1E-29 129.0 12.9 104 10-114 1-113 (126)
4 KOG1030 Predicted Ca2+-depende 99.9 2.2E-24 4.8E-29 129.0 10.9 98 7-105 4-101 (168)
5 cd04042 C2A_MCTP_PRT C2 domain 99.9 1.8E-23 3.8E-28 122.1 14.0 104 10-114 1-105 (121)
6 cd08376 C2B_MCTP_PRT C2 domain 99.9 2.2E-23 4.7E-28 120.8 13.6 105 10-115 1-106 (116)
7 cd08681 C2_fungal_Inn1p-like C 99.9 1.2E-23 2.6E-28 122.2 11.8 103 9-112 1-104 (118)
8 cd08395 C2C_Munc13 C2 domain t 99.9 2.4E-23 5.2E-28 120.9 12.9 102 10-113 1-113 (120)
9 cd08381 C2B_PI3K_class_II C2 d 99.9 1.2E-23 2.5E-28 123.0 11.6 101 8-110 12-121 (122)
10 cd08678 C2_C21orf25-like C2 do 99.9 4.8E-23 1E-27 121.0 13.3 100 11-113 1-102 (126)
11 cd04028 C2B_RIM1alpha C2 domai 99.9 4.9E-23 1.1E-27 123.1 12.8 107 7-114 27-140 (146)
12 cd04050 C2B_Synaptotagmin-like 99.9 6.4E-23 1.4E-27 117.0 12.4 99 11-113 2-103 (105)
13 cd04049 C2_putative_Elicitor-r 99.9 9.9E-23 2.1E-27 119.4 13.1 105 9-113 1-109 (124)
14 cd04019 C2C_MCTP_PRT_plant C2 99.9 9.1E-23 2E-27 122.9 13.1 105 10-114 1-110 (150)
15 cd08394 C2A_Munc13 C2 domain f 99.9 1.4E-22 3E-27 117.8 12.8 98 9-112 2-101 (127)
16 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 2.4E-22 5.3E-27 117.6 13.5 102 10-112 1-103 (123)
17 cd04024 C2A_Synaptotagmin-like 99.9 1.9E-22 4.2E-27 118.6 13.0 104 9-113 1-110 (128)
18 cd04022 C2A_MCTP_PRT_plant C2 99.9 1.1E-22 2.3E-27 119.7 11.6 103 10-113 1-109 (127)
19 cd08688 C2_KIAA0528-like C2 do 99.9 1.2E-22 2.6E-27 116.8 11.5 101 11-112 1-109 (110)
20 cd04010 C2B_RasA3 C2 domain se 99.9 8.2E-23 1.8E-27 122.7 11.1 102 10-114 1-124 (148)
21 cd08387 C2A_Synaptotagmin-8 C2 99.9 2.1E-22 4.6E-27 117.9 12.2 105 7-112 14-124 (124)
22 cd04029 C2A_SLP-4_5 C2 domain 99.9 3.2E-22 7E-27 117.3 12.7 104 7-111 13-125 (125)
23 cd04039 C2_PSD C2 domain prese 99.9 3.3E-22 7.2E-27 114.5 12.5 93 9-102 1-99 (108)
24 cd04051 C2_SRC2_like C2 domain 99.9 1.4E-22 3E-27 118.9 11.1 106 10-115 1-117 (125)
25 cd08677 C2A_Synaptotagmin-13 C 99.9 1.9E-22 4.2E-27 116.1 11.4 98 6-107 11-115 (118)
26 cd08393 C2A_SLP-1_2 C2 domain 99.9 1.7E-22 3.7E-27 118.5 11.3 104 7-111 13-125 (125)
27 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 6E-22 1.3E-26 115.6 13.5 102 11-113 2-105 (121)
28 cd04045 C2C_Tricalbin-like C2 99.9 5E-22 1.1E-26 115.8 13.0 103 9-113 1-104 (120)
29 cd08391 C2A_C2C_Synaptotagmin_ 99.9 6.4E-22 1.4E-26 115.3 12.8 102 9-112 1-109 (121)
30 cd08375 C2_Intersectin C2 doma 99.9 7.9E-22 1.7E-26 117.1 13.2 93 7-100 13-106 (136)
31 cd08377 C2C_MCTP_PRT C2 domain 99.9 1.1E-21 2.3E-26 114.1 13.4 102 9-113 1-102 (119)
32 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 1.1E-21 2.4E-26 114.5 13.2 102 11-113 2-105 (121)
33 cd04015 C2_plant_PLD C2 domain 99.9 1.3E-21 2.7E-26 118.9 13.9 107 6-114 4-141 (158)
34 cd08385 C2A_Synaptotagmin-1-5- 99.9 7.6E-22 1.6E-26 115.6 12.6 105 7-112 14-124 (124)
35 cd04036 C2_cPLA2 C2 domain pre 99.9 6.5E-22 1.4E-26 115.2 12.1 101 11-113 2-106 (119)
36 cd08685 C2_RGS-like C2 domain 99.9 3.9E-22 8.4E-27 116.0 10.8 102 7-110 10-119 (119)
37 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 7.7E-22 1.7E-26 116.8 12.3 103 10-113 1-116 (133)
38 cd08392 C2A_SLP-3 C2 domain fi 99.9 8.9E-22 1.9E-26 115.8 11.7 103 7-110 13-127 (128)
39 cd04030 C2C_KIAA1228 C2 domain 99.9 1.3E-21 2.9E-26 114.9 12.4 104 7-111 14-127 (127)
40 cd08382 C2_Smurf-like C2 domai 99.9 2.7E-21 5.8E-26 113.2 12.6 102 10-113 1-106 (123)
41 cd04041 C2A_fungal C2 domain f 99.9 2E-21 4.3E-26 111.9 11.7 91 9-100 1-99 (111)
42 cd04031 C2A_RIM1alpha C2 domai 99.9 2E-21 4.3E-26 113.9 11.9 103 7-111 14-125 (125)
43 cd08378 C2B_MCTP_PRT_plant C2 99.9 1.4E-21 3.1E-26 114.0 11.2 98 11-114 2-105 (121)
44 cd08386 C2A_Synaptotagmin-7 C2 99.9 3.9E-21 8.4E-26 112.7 12.9 105 7-112 14-125 (125)
45 cd04018 C2C_Ferlin C2 domain t 99.9 3.7E-21 8E-26 115.8 12.8 103 10-113 1-126 (151)
46 cd08521 C2A_SLP C2 domain firs 99.9 3E-21 6.6E-26 112.8 12.1 103 7-110 12-123 (123)
47 cd08680 C2_Kibra C2 domain fou 99.9 2.3E-21 4.9E-26 113.4 11.1 103 7-110 12-124 (124)
48 cd08388 C2A_Synaptotagmin-4-11 99.9 7.6E-21 1.6E-25 111.9 13.2 105 7-112 14-128 (128)
49 cd04038 C2_ArfGAP C2 domain pr 99.9 5.3E-21 1.2E-25 114.5 12.6 91 9-101 2-92 (145)
50 cd08675 C2B_RasGAP C2 domain s 99.9 3.1E-21 6.6E-26 114.8 11.5 102 11-114 1-122 (137)
51 cd04044 C2A_Tricalbin-like C2 99.9 6.5E-21 1.4E-25 111.5 12.4 99 9-108 2-103 (124)
52 cd08390 C2A_Synaptotagmin-15-1 99.9 8.1E-21 1.7E-25 111.0 12.6 104 7-111 12-122 (123)
53 cd04027 C2B_Munc13 C2 domain s 99.9 1.2E-20 2.5E-25 111.0 13.3 102 10-114 2-114 (127)
54 cd04046 C2_Calpain C2 domain p 99.9 1.3E-20 2.9E-25 110.6 13.3 100 8-111 2-101 (126)
55 cd04011 C2B_Ferlin C2 domain s 99.9 1.4E-20 3.1E-25 108.3 12.0 100 8-112 3-110 (111)
56 cd08373 C2A_Ferlin C2 domain f 99.9 1.7E-20 3.8E-25 110.3 12.6 97 15-114 2-101 (127)
57 cd04014 C2_PKC_epsilon C2 doma 99.9 3.9E-20 8.4E-25 109.4 13.8 103 8-112 3-118 (132)
58 cd08389 C2A_Synaptotagmin-14_1 99.9 1.9E-20 4.1E-25 109.7 11.9 104 7-112 14-124 (124)
59 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 1.1E-20 2.3E-25 115.2 11.1 104 7-111 25-137 (162)
60 cd04026 C2_PKC_alpha_gamma C2 99.9 2.3E-20 5E-25 110.2 11.8 107 5-113 9-122 (131)
61 cd04032 C2_Perforin C2 domain 99.9 1.7E-20 3.7E-25 110.0 10.9 91 8-100 27-119 (127)
62 cd04040 C2D_Tricalbin-like C2 99.9 4.8E-20 1E-24 106.6 12.6 103 11-114 1-105 (115)
63 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.2E-19 2.6E-24 106.6 13.6 100 9-113 4-105 (126)
64 cd08384 C2B_Rabphilin_Doc2 C2 99.8 8.9E-21 1.9E-25 112.3 8.8 104 7-113 11-122 (133)
65 cd04043 C2_Munc13_fungal C2 do 99.8 1.3E-19 2.8E-24 106.3 13.7 103 9-112 1-110 (126)
66 cd04048 C2A_Copine C2 domain f 99.8 5.4E-20 1.2E-24 107.2 10.9 99 15-114 6-116 (120)
67 cd04017 C2D_Ferlin C2 domain f 99.8 1.9E-19 4.1E-24 106.9 13.2 103 10-113 2-118 (135)
68 cd08676 C2A_Munc13-like C2 dom 99.8 1E-19 2.2E-24 109.7 11.8 99 6-110 25-153 (153)
69 cd04009 C2B_Munc13-like C2 dom 99.8 8.3E-20 1.8E-24 108.2 10.8 93 7-100 14-118 (133)
70 cd00276 C2B_Synaptotagmin C2 d 99.8 2.8E-20 6.1E-25 110.1 7.7 105 7-114 12-124 (134)
71 cd08404 C2B_Synaptotagmin-4 C2 99.8 4.6E-20 1E-24 109.6 8.5 103 7-112 13-123 (136)
72 cd04037 C2E_Ferlin C2 domain f 99.8 4.8E-19 1E-23 103.7 12.3 90 10-100 1-93 (124)
73 cd08407 C2B_Synaptotagmin-13 C 99.8 8.8E-20 1.9E-24 108.3 8.8 90 7-97 13-112 (138)
74 cd08405 C2B_Synaptotagmin-7 C2 99.8 6.7E-20 1.5E-24 108.9 8.1 91 7-98 13-111 (136)
75 cd08406 C2B_Synaptotagmin-12 C 99.8 1.1E-19 2.3E-24 107.9 7.8 89 7-96 13-109 (136)
76 cd08402 C2B_Synaptotagmin-1 C2 99.8 9.1E-20 2E-24 108.4 7.4 90 7-97 13-110 (136)
77 cd08403 C2B_Synaptotagmin-3-5- 99.8 1.9E-19 4E-24 106.8 8.5 89 7-96 12-108 (134)
78 KOG0696 Serine/threonine prote 99.8 2.5E-20 5.5E-25 125.9 4.5 106 6-113 177-289 (683)
79 cd04035 C2A_Rabphilin_Doc2 C2 99.8 2.3E-18 5E-23 100.7 12.3 99 7-107 13-120 (123)
80 cd04013 C2_SynGAP_like C2 doma 99.8 3.4E-18 7.4E-23 102.1 13.1 101 9-115 11-116 (146)
81 cd00275 C2_PLC_like C2 domain 99.8 3.6E-18 7.7E-23 100.3 12.9 102 10-115 3-113 (128)
82 cd08410 C2B_Synaptotagmin-17 C 99.8 3.5E-19 7.5E-24 105.7 8.4 104 7-113 12-124 (135)
83 cd08409 C2B_Synaptotagmin-15 C 99.8 3.3E-19 7.2E-24 106.1 8.3 91 7-99 13-111 (137)
84 cd04021 C2_E3_ubiquitin_ligase 99.8 5.5E-18 1.2E-22 99.4 13.3 90 9-101 2-92 (125)
85 cd08408 C2B_Synaptotagmin-14_1 99.8 2.4E-18 5.1E-23 102.5 10.6 91 7-98 13-112 (138)
86 cd08690 C2_Freud-1 C2 domain f 99.8 8.3E-18 1.8E-22 101.4 12.5 100 11-111 4-120 (155)
87 PLN03200 cellulose synthase-in 99.8 1.1E-18 2.3E-23 134.7 10.5 106 3-112 1974-2082(2102)
88 cd08691 C2_NEDL1-like C2 domai 99.8 1.8E-17 4E-22 98.4 13.6 100 10-112 2-121 (137)
89 cd08383 C2A_RasGAP C2 domain ( 99.8 2.3E-17 5E-22 95.5 12.2 97 11-114 2-102 (117)
90 cd08686 C2_ABR C2 domain in th 99.8 1.8E-17 3.9E-22 95.3 11.0 81 11-98 1-93 (118)
91 cd08692 C2B_Tac2-N C2 domain s 99.8 1.1E-17 2.3E-22 98.6 9.8 91 7-98 12-110 (135)
92 cd04047 C2B_Copine C2 domain s 99.8 7.6E-17 1.6E-21 92.5 12.1 87 13-101 4-101 (110)
93 PLN03008 Phospholipase D delta 99.7 4E-17 8.7E-22 117.8 12.1 108 6-115 11-161 (868)
94 cd04052 C2B_Tricalbin-like C2 99.7 1.3E-16 2.9E-21 91.7 10.8 86 25-112 8-96 (111)
95 PF00168 C2: C2 domain; Inter 99.7 1E-16 2.2E-21 87.5 8.8 81 11-92 1-85 (85)
96 KOG1028 Ca2+-dependent phospho 99.7 8.2E-16 1.8E-20 105.8 11.7 106 7-113 165-276 (421)
97 cd00030 C2 C2 domain. The C2 d 99.7 2.5E-15 5.3E-20 83.7 11.4 99 11-110 1-102 (102)
98 smart00239 C2 Protein kinase C 99.7 5.7E-15 1.2E-19 82.5 11.4 92 10-102 1-96 (101)
99 PLN02223 phosphoinositide phos 99.6 1.5E-13 3.3E-18 95.9 12.2 104 8-115 408-522 (537)
100 cd08374 C2F_Ferlin C2 domain s 99.6 1.4E-13 3.1E-18 81.0 10.3 92 11-103 2-126 (133)
101 KOG1011 Neurotransmitter relea 99.5 7.7E-15 1.7E-19 103.7 5.6 102 9-113 295-407 (1283)
102 KOG0169 Phosphoinositide-speci 99.5 1.8E-13 3.9E-18 97.7 10.2 103 10-115 617-729 (746)
103 PLN02270 phospholipase D alpha 99.5 1.2E-12 2.5E-17 95.0 12.6 109 6-115 5-132 (808)
104 PLN02952 phosphoinositide phos 99.5 1.6E-12 3.5E-17 92.3 12.3 104 8-115 469-584 (599)
105 PLN02230 phosphoinositide phos 99.4 2.4E-12 5.1E-17 91.4 11.7 104 8-115 468-583 (598)
106 cd08689 C2_fungal_Pkc1p C2 dom 99.4 2.1E-12 4.5E-17 72.5 8.4 84 11-100 1-88 (109)
107 KOG2059 Ras GTPase-activating 99.4 5.5E-13 1.2E-17 94.5 7.6 104 9-114 5-109 (800)
108 COG5038 Ca2+-dependent lipid-b 99.4 1.3E-12 2.8E-17 96.8 9.2 106 6-112 1037-1144(1227)
109 KOG1028 Ca2+-dependent phospho 99.4 2.5E-12 5.4E-17 88.8 10.1 89 8-97 297-393 (421)
110 PLN02222 phosphoinositide phos 99.4 1.1E-11 2.3E-16 87.9 12.2 104 8-115 451-566 (581)
111 PLN02228 Phosphoinositide phos 99.3 3.3E-11 7.2E-16 85.3 12.0 103 9-115 431-546 (567)
112 COG5038 Ca2+-dependent lipid-b 99.3 2.1E-11 4.6E-16 90.6 9.8 100 5-105 432-534 (1227)
113 KOG1264 Phospholipase C [Lipid 99.3 8.9E-11 1.9E-15 85.0 10.3 94 6-100 1062-1162(1267)
114 KOG1011 Neurotransmitter relea 99.2 7.3E-11 1.6E-15 84.0 9.2 110 1-112 1117-1237(1283)
115 KOG1031 Predicted Ca2+-depende 99.1 3.2E-10 7E-15 80.0 7.2 104 8-112 2-120 (1169)
116 KOG1328 Synaptic vesicle prote 99.0 7.8E-11 1.7E-15 84.5 1.8 93 7-100 945-1049(1103)
117 PLN02352 phospholipase D epsil 99.0 9.5E-09 2.1E-13 74.9 10.5 101 6-115 7-115 (758)
118 KOG2059 Ras GTPase-activating 99.0 1.2E-09 2.6E-14 78.0 5.7 87 27-114 148-255 (800)
119 KOG1326 Membrane-associated pr 98.9 1.2E-09 2.6E-14 80.4 3.1 90 8-98 612-704 (1105)
120 KOG0905 Phosphoinositide 3-kin 98.9 2.6E-09 5.7E-14 80.0 4.8 105 7-112 1522-1635(1639)
121 KOG1328 Synaptic vesicle prote 98.7 9E-10 2E-14 79.2 -1.4 104 9-114 114-285 (1103)
122 cd08683 C2_C2cd3 C2 domain fou 98.5 9.2E-07 2E-11 51.6 7.2 99 11-110 1-143 (143)
123 PLN02964 phosphatidylserine de 98.4 8E-07 1.7E-11 64.4 6.2 88 7-102 52-141 (644)
124 KOG1013 Synaptic vesicle prote 98.4 7.6E-07 1.6E-11 59.2 5.5 87 6-93 230-324 (362)
125 KOG1013 Synaptic vesicle prote 98.2 1.4E-07 3.1E-12 62.5 -1.5 93 7-100 91-192 (362)
126 KOG1327 Copine [Signal transdu 98.2 1.2E-05 2.7E-10 56.8 7.4 83 16-100 143-236 (529)
127 KOG3837 Uncharacterized conser 98.1 2E-06 4.4E-11 58.9 2.8 107 6-113 364-488 (523)
128 KOG2060 Rab3 effector RIM1 and 98.1 4E-06 8.6E-11 56.7 3.4 106 7-113 267-380 (405)
129 PF12416 DUF3668: Cep120 prote 98.0 0.00012 2.7E-09 49.7 10.0 99 11-113 2-114 (340)
130 KOG1265 Phospholipase C [Lipid 97.8 3.7E-05 8.1E-10 57.2 5.1 88 5-100 699-796 (1189)
131 KOG1326 Membrane-associated pr 97.8 7.8E-06 1.7E-10 61.1 1.2 87 11-98 208-304 (1105)
132 cd08684 C2A_Tac2-N C2 domain f 97.8 9.3E-05 2E-09 40.6 4.7 85 13-100 3-94 (103)
133 cd08693 C2_PI3K_class_I_beta_d 97.5 0.0026 5.7E-08 39.4 8.7 90 7-99 6-121 (173)
134 cd08398 C2_PI3K_class_I_alpha 97.3 0.0059 1.3E-07 37.3 8.9 86 8-98 7-106 (158)
135 cd08397 C2_PI3K_class_III C2 d 97.2 0.003 6.6E-08 38.6 6.9 69 29-98 29-107 (159)
136 cd08380 C2_PI3K_like C2 domain 97.2 0.0067 1.5E-07 36.8 8.3 88 9-98 8-107 (156)
137 PF10358 NT-C2: N-terminal C2 97.1 0.021 4.6E-07 33.9 11.0 99 10-112 8-120 (143)
138 cd04012 C2A_PI3K_class_II C2 d 96.9 0.01 2.2E-07 36.7 7.4 92 7-98 6-119 (171)
139 PF15627 CEP76-C2: CEP76 C2 do 96.9 0.03 6.5E-07 34.1 8.8 94 9-103 9-120 (156)
140 cd08687 C2_PKN-like C2 domain 96.8 0.015 3.3E-07 32.1 6.4 66 29-100 8-74 (98)
141 PF00792 PI3K_C2: Phosphoinosi 96.5 0.036 7.9E-07 33.1 7.4 54 44-98 23-85 (142)
142 cd08399 C2_PI3K_class_I_gamma 96.4 0.066 1.4E-06 33.4 8.4 89 8-98 9-122 (178)
143 cd08695 C2_Dock-B C2 domains f 95.9 0.23 5E-06 31.3 10.1 55 42-97 54-113 (189)
144 PF14429 DOCK-C2: C2 domain in 95.6 0.17 3.7E-06 31.5 7.8 55 42-97 60-120 (184)
145 PF11618 DUF3250: Protein of u 95.1 0.21 4.4E-06 28.6 6.3 78 33-113 2-90 (107)
146 PF15625 CC2D2AN-C2: CC2D2A N- 95.1 0.44 9.5E-06 29.4 8.2 69 30-99 37-107 (168)
147 cd08694 C2_Dock-A C2 domains f 94.7 0.65 1.4E-05 29.5 8.8 54 42-96 54-114 (196)
148 smart00142 PI3K_C2 Phosphoinos 94.6 0.4 8.6E-06 26.9 7.2 69 11-80 13-91 (100)
149 KOG1452 Predicted Rho GTPase-a 94.4 0.22 4.7E-06 33.9 6.0 80 7-88 49-131 (442)
150 KOG1327 Copine [Signal transdu 94.2 0.15 3.3E-06 36.8 5.3 61 42-103 42-107 (529)
151 cd08679 C2_DOCK180_related C2 94.0 0.63 1.4E-05 28.9 7.2 53 44-97 55-115 (178)
152 cd08696 C2_Dock-C C2 domains f 92.7 1.3 2.7E-05 27.8 6.9 56 41-97 54-118 (179)
153 cd08697 C2_Dock-D C2 domains f 92.3 1.8 3.9E-05 27.3 7.3 56 41-97 56-123 (185)
154 KOG0694 Serine/threonine prote 86.6 0.18 4E-06 37.4 -0.2 68 30-98 28-95 (694)
155 KOG1329 Phospholipase D1 [Lipi 75.7 4.1 8.8E-05 31.7 3.3 84 31-114 139-223 (887)
156 KOG0906 Phosphatidylinositol 3 74.8 3.2 7E-05 31.3 2.6 43 55-97 77-123 (843)
157 PF07162 B9-C2: Ciliary basal 74.1 18 0.00039 22.3 10.4 76 14-95 7-101 (168)
158 PF14909 SPATA6: Spermatogenes 67.7 25 0.00053 21.2 8.3 73 27-101 17-102 (140)
159 KOG0904 Phosphatidylinositol 3 59.0 28 0.00061 27.6 4.8 68 7-78 341-420 (1076)
160 KOG4269 Rac GTPase-activating 56.6 5.3 0.00011 31.3 0.8 65 7-78 757-826 (1112)
161 PF01060 DUF290: Transthyretin 56.1 27 0.00058 18.6 3.4 26 69-94 11-36 (80)
162 KOG2419 Phosphatidylserine dec 53.9 3.5 7.5E-05 31.1 -0.4 51 29-81 304-356 (975)
163 PF14924 DUF4497: Protein of u 52.1 43 0.00094 19.1 4.5 31 69-99 28-61 (112)
164 KOG4028 Uncharacterized conser 45.8 28 0.00062 20.8 2.5 24 70-93 74-97 (175)
165 KOG3543 Ca2+-dependent activat 44.5 1E+02 0.0022 23.9 5.6 80 11-94 343-425 (1218)
166 PF03646 FlaG: FlaG protein; 36.4 78 0.0017 17.7 3.4 38 57-99 53-90 (107)
167 PHA02919 host-range protein; P 29.2 76 0.0017 19.3 2.6 52 4-59 1-54 (150)
168 PRK08868 flagellar protein Fla 23.8 1.8E+02 0.0039 17.7 3.6 38 56-98 86-123 (144)
169 KOG4027 Uncharacterized conser 21.8 2.2E+02 0.0047 17.8 8.2 27 70-96 83-109 (187)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.95 E-value=9e-27 Score=135.51 Aligned_cols=106 Identities=26% Similarity=0.390 Sum_probs=93.0
Q ss_pred CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139 8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF 87 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~ 87 (115)
.|+|+|+|++|+++++.+ .+.+||||++.++..+++|+++.+++.||.|||+|.|.+.+....|.|+|||++.+++|++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER 79 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence 378999999999998777 7899999999999999999998765899999999999997666789999999999999999
Q ss_pred eEEEEEEcc-hhhccCeeeeEEecccCC
Q 048139 88 IGSGRIQLH-KALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 88 lG~~~v~l~-~l~~~~~~~~~~~L~~~~ 114 (115)
||.+.+++. .+..+.....|++|.+++
T Consensus 80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~ 107 (121)
T cd04016 80 IAWTHITIPESVFNGETLDDWYSLSGKQ 107 (121)
T ss_pred EEEEEEECchhccCCCCccccEeCcCcc
Confidence 999999996 455555578888998754
No 2
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.94 E-value=4.9e-25 Score=129.48 Aligned_cols=103 Identities=23% Similarity=0.317 Sum_probs=90.7
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC------CCceEEEEEEeCCCCCC
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE------GLRELNVVVWNSHTLTP 84 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~------~~~~L~~~v~~~~~~~~ 84 (115)
|+|+|++|++|+..+..+.+||||++.++..+++|+++.+ +.||.|||.|.|.+.. ....|.++|||++..++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 5799999999998888888999999999999999999887 8999999999999854 46789999999998888
Q ss_pred CceeEEEEEEcchhh--ccCeeeeEEecccCC
Q 048139 85 DEFIGSGRIQLHKAL--SQGFDDAAWPLQTKT 114 (115)
Q Consensus 85 ~~~lG~~~v~l~~l~--~~~~~~~~~~L~~~~ 114 (115)
+++||++.+++.++. .+.....||+|.++.
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~ 111 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP 111 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCC
Confidence 999999999999987 445567888997654
No 3
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.93 E-value=4.9e-25 Score=129.00 Aligned_cols=104 Identities=28% Similarity=0.470 Sum_probs=92.7
Q ss_pred eEEEEEeeecC---CCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCC---
Q 048139 10 PLEITVVGCYN---LDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLT--- 83 (115)
Q Consensus 10 ~l~v~i~~a~~---l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~--- 83 (115)
.|+|+|++|++ |+..+..|.+||||.+.++.++.+|+++.+ +.||.|||+|.|.+......|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~ 79 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVED-SSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKE 79 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccC-CCCCcceeEEEEEecCCCCEEEEEEEECCCccccc
Confidence 38999999999 777888899999999999999999999987 99999999999999655568999999998763
Q ss_pred ---CCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139 84 ---PDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 84 ---~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
+|++||++.+++..+..+.....||+|.+.+
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 113 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN 113 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC
Confidence 8999999999999998888888899998643
No 4
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.92 E-value=2.2e-24 Score=128.98 Aligned_cols=98 Identities=28% Similarity=0.455 Sum_probs=90.7
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCc
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDE 86 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~ 86 (115)
.-|.|+|.|.+|.+|...+..+++||||.+.+++++.+|+++.+ +.||+|||.|.|.+......|+++|||++.++.||
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~-n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD 82 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYK-NLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDD 82 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecC-CCCCcccceEEEEecCCCceEEEEEEeCCCCCccc
Confidence 46889999999999998888789999999999999999999876 99999999999999888899999999999999999
Q ss_pred eeEEEEEEcchhhccCeee
Q 048139 87 FIGSGRIQLHKALSQGFDD 105 (115)
Q Consensus 87 ~lG~~~v~l~~l~~~~~~~ 105 (115)
++|.+++++.+++..+...
T Consensus 83 ~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred ccceeeeccHHHHHHhhhh
Confidence 9999999999998865544
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.92 E-value=1.8e-23 Score=122.06 Aligned_cols=104 Identities=27% Similarity=0.444 Sum_probs=93.0
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l 88 (115)
.|+|+|++|++|+..+..+.+||||++.+.+ ..++|+++.+ +.||.|+|.|.|.+......|.|+|||++..+++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcce
Confidence 3789999999999888888999999999986 6889999887 9999999999999865567899999999988899999
Q ss_pred EEEEEEcchhhccCeeeeEEecccCC
Q 048139 89 GSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 89 G~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
|++.+++.++..++....|++|.++.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~~ 105 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDPN 105 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCCC
Confidence 99999999999888888899997654
No 6
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.92 E-value=2.2e-23 Score=120.81 Aligned_cols=105 Identities=30% Similarity=0.485 Sum_probs=93.5
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCC-CceEEEEEEeCCCCCCCcee
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEG-LRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~L~~~v~~~~~~~~~~~l 88 (115)
.|+|+|++|++|+..+..+.+|||+++.+.+..++|+++.+ +.||.|+|.|.|.+... ...|.++|||++..+++++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSK-TLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccC-CCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence 47899999999998888888999999999999999999887 99999999999998543 67899999999988889999
Q ss_pred EEEEEEcchhhccCeeeeEEecccCCC
Q 048139 89 GSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 89 G~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
|++.+++.++..++....|++|.+..|
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~G 106 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDGEG 106 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCCCc
Confidence 999999999988777888889876543
No 7
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.92 E-value=1.2e-23 Score=122.25 Aligned_cols=103 Identities=29% Similarity=0.452 Sum_probs=90.1
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCce
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEF 87 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~ 87 (115)
|.|+|+|++|++|+..+..+.+||||++.++...++|+++.+++.||.|||.|.|.+.. ....|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 57999999999999988889999999999998889999875547899999999999954 4578999999998765 889
Q ss_pred eEEEEEEcchhhccCeeeeEEeccc
Q 048139 88 IGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 88 lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
||++.+++.++..++...+|++|..
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~ 104 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTL 104 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEecc
Confidence 9999999999987666678888864
No 8
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.91 E-value=2.4e-23 Score=120.92 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=86.0
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----C--eEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEEe
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYG-----S--SKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVWN 78 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~--~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~~ 78 (115)
+|+|+|++|++|+..+ .|.+|||+++++. . .+++|++..+ +.||.|||.|.|.+.. ....|.|+|||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence 5899999999998876 4889999999973 1 3568888865 9999999999999953 23468999999
Q ss_pred CCCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
++..+++++||++.+++..+..++....|++|..+
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 98777899999999999999988887888888653
No 9
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.91 E-value=1.2e-23 Score=122.96 Aligned_cols=101 Identities=32% Similarity=0.362 Sum_probs=88.8
Q ss_pred CceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-c---CCCceEEEEEEe
Q 048139 8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-I---EGLRELNVVVWN 78 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~---~~~~~L~~~v~~ 78 (115)
.+.|.|.|++|++|+..+ .+.+||||++.+. ..+++|+++++ +.||.|||+|.|.+ + .....|.++|||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 578999999999999888 7889999999985 34788999887 99999999999987 3 245789999999
Q ss_pred CCCCCCCceeEEEEEEcchhhccCeeeeEEec
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPL 110 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L 110 (115)
++..+++++||++.+++.++...+....||+|
T Consensus 90 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 90 HDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 99888899999999999999877767788887
No 10
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.91 E-value=4.8e-23 Score=121.02 Aligned_cols=100 Identities=22% Similarity=0.407 Sum_probs=88.8
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEEC--CeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYG--SSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l 88 (115)
|.|+|++|++|+. ..+.+||||++.+. ...++|+++.+ +.||.|+|.|.|.+......|.|+|||++..+++++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceE
Confidence 5799999999987 67889999999997 35789999887 8999999999999976667899999999988889999
Q ss_pred EEEEEEcchhhccCeeeeEEecccC
Q 048139 89 GSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 89 G~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
|++.+++.++........||+|.++
T Consensus 78 G~~~i~l~~l~~~~~~~~~~~L~~~ 102 (126)
T cd08678 78 GLAIVPFDELRKNPSGRQIFPLQGR 102 (126)
T ss_pred EEEEEeHHHhccCCceeEEEEecCC
Confidence 9999999999887777788899765
No 11
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.91 E-value=4.9e-23 Score=123.14 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=91.1
Q ss_pred cCceEEEEEeeecCCCCCC-CCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEE-eC
Q 048139 7 QGLPLEITVVGCYNLDDKE-WISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVW-NS 79 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~-~~ 79 (115)
..+.|.|+|++|++|+..+ ..+.+|||+++++.. .+++|+++++ +.||.|||+|.|.+......|.++|| ++
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSPTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence 4578999999999998754 567899999999842 3789999876 99999999999999767789999999 57
Q ss_pred CCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139 80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
+...++++||++.++|+.+...+....||+|.+..
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 77778999999999999986666677899998753
No 12
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.91 E-value=6.4e-23 Score=117.00 Aligned_cols=99 Identities=24% Similarity=0.337 Sum_probs=87.4
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCceeE
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFIG 89 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~lG 89 (115)
|.|+|++|++|+..+..+.+||||++.+++..++|+++.+ +.+|.|||.|.|.+.. ....|.|+|||++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999998887888999999999999999999876 9999999999999964 45789999999874 78999
Q ss_pred EEEEEcchhhccC--eeeeEEecccC
Q 048139 90 SGRIQLHKALSQG--FDDAAWPLQTK 113 (115)
Q Consensus 90 ~~~v~l~~l~~~~--~~~~~~~L~~~ 113 (115)
++.+++.++...+ ...+||+|.++
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCCC
Confidence 9999999998754 46788898754
No 13
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.91 E-value=9.9e-23 Score=119.36 Aligned_cols=105 Identities=23% Similarity=0.473 Sum_probs=93.2
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCC----CceEEEEEEeCCCCCC
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEG----LRELNVVVWNSHTLTP 84 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~L~~~v~~~~~~~~ 84 (115)
|.|+|+|++|++|+..+..+.+|||+++.+....++|++..+++.+|.|||.|.|.+... ...|.|+|||.+..++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999998888889999999999988889988764489999999999999654 5789999999988888
Q ss_pred CceeEEEEEEcchhhccCeeeeEEecccC
Q 048139 85 DEFIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 85 ~~~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
+++||++.+++.++..++....|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999998888888888764
No 14
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.91 E-value=9.1e-23 Score=122.89 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=90.4
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCcee
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~l 88 (115)
.|.|+|++|++|+..+..|.+||||++.++...++|++..+++.||.|||.|.|.+.. ....|.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 3889999999999999889999999999999999999986546999999999999853 456899999999887789999
Q ss_pred EEEEEEcchhhcc----CeeeeEEecccCC
Q 048139 89 GSGRIQLHKALSQ----GFDDAAWPLQTKT 114 (115)
Q Consensus 89 G~~~v~l~~l~~~----~~~~~~~~L~~~~ 114 (115)
|++.++++++... ....+||+|.+..
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~ 110 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPG 110 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence 9999999998653 2356788998653
No 15
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.90 E-value=1.4e-22 Score=117.84 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=84.0
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l 88 (115)
+.|.|+|++|++|+..+ ..+||+.+.+++.+.+|++.++ .||.|||.|.|.+......|.|+|||++.. .|+++
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~--~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l 75 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG--SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLV 75 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC--CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence 57999999999997654 4589999999999999998764 499999999999976666799999999854 89999
Q ss_pred EEEEEEcchhhccCee--eeEEeccc
Q 048139 89 GSGRIQLHKALSQGFD--DAAWPLQT 112 (115)
Q Consensus 89 G~~~v~l~~l~~~~~~--~~~~~L~~ 112 (115)
|++.++|.++..+... .+||+|.+
T Consensus 76 G~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 76 GTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEEEEhHHcccCCCCCCCccEecCh
Confidence 9999999999876554 67888864
No 16
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.90 E-value=2.4e-22 Score=117.55 Aligned_cols=102 Identities=21% Similarity=0.363 Sum_probs=90.8
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCcee
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~l 88 (115)
.|+|+|++|++|+..+..+.+||||.+.+++..++|+++.+ +.||.|+|+|.|.+.. ....|.|+|||++..+++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence 38999999999998887888999999999988999999887 9999999999999854 356899999999988889999
Q ss_pred EEEEEEcchhhccCeeeeEEeccc
Q 048139 89 GSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 89 G~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
|++.+++.++...+....|+.|.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCC
Confidence 999999999987666778888875
No 17
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.90 E-value=1.9e-22 Score=118.59 Aligned_cols=104 Identities=22% Similarity=0.455 Sum_probs=91.3
Q ss_pred ceEEEEEeeecCCCCCCC--CCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCC
Q 048139 9 LPLEITVVGCYNLDDKEW--ISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPD 85 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~ 85 (115)
|.|.|+|++|++|+..+. .+.+||||.+.++...++|+++.+ +.+|.|+|.|.|.+.. ....|.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPN-TLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecC-CcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 679999999999998877 788999999999999999999887 9999999999999964 567999999999988889
Q ss_pred ceeEEEEEEcchhhc---cCeeeeEEecccC
Q 048139 86 EFIGSGRIQLHKALS---QGFDDAAWPLQTK 113 (115)
Q Consensus 86 ~~lG~~~v~l~~l~~---~~~~~~~~~L~~~ 113 (115)
++||++.+++.++.. .+....|+.|.++
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 999999999999973 3445678888765
No 18
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=1.1e-22 Score=119.66 Aligned_cols=103 Identities=26% Similarity=0.357 Sum_probs=88.7
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCC----CceEEEEEEeCCCCC-C
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEG----LRELNVVVWNSHTLT-P 84 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~L~~~v~~~~~~~-~ 84 (115)
+|.|+|++|++|+..+..+.+||||++.+...+++|+++.+ +.||.|||.|.|.+... ...|.|+|||.+..+ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcC-CCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence 58999999999998888888999999999999999999886 99999999999998532 357999999988776 7
Q ss_pred CceeEEEEEEcchhhc-cCeeeeEEecccC
Q 048139 85 DEFIGSGRIQLHKALS-QGFDDAAWPLQTK 113 (115)
Q Consensus 85 ~~~lG~~~v~l~~l~~-~~~~~~~~~L~~~ 113 (115)
+++||++.+++.++.. +....+||+|..+
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~ 109 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKR 109 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeC
Confidence 8999999999999974 4455678888754
No 19
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.90 E-value=1.2e-22 Score=116.76 Aligned_cols=101 Identities=23% Similarity=0.366 Sum_probs=88.3
Q ss_pred EEEEEeeecCCCCCCC-CCCCCcEEEEEECCeEEEEEEecCCCCCCee-ceeEEEeecCC---CceEEEEEEeCCCCCCC
Q 048139 11 LEITVVGCYNLDDKEW-ISRQDPYVCLEYGSSKYRTKTCTDGGKNPTF-QEKFVLPLIEG---LRELNVVVWNSHTLTPD 85 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w-~e~~~~~~~~~---~~~L~~~v~~~~~~~~~ 85 (115)
|.|+|++|++|+..+. .+.+|||+++.++...++|+++.+ +.+|.| +|.|.|.+... ...|.|+|||++..+++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 5799999999988763 677899999999999999999887 999999 99999998542 36899999999988889
Q ss_pred ceeEEEEEEcchhhcc---CeeeeEEeccc
Q 048139 86 EFIGSGRIQLHKALSQ---GFDDAAWPLQT 112 (115)
Q Consensus 86 ~~lG~~~v~l~~l~~~---~~~~~~~~L~~ 112 (115)
++||++.+++.++... .....||+|.+
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999999883 45678998865
No 20
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.90 E-value=8.2e-23 Score=122.65 Aligned_cols=102 Identities=29% Similarity=0.388 Sum_probs=87.0
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeec------------C----C
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLI------------E----G 68 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~------------~----~ 68 (115)
+|.|+|++|++|+. ..|.+||||++.+.. .+++|+++.+ +.||.|||.|.|.+. + .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCccccc
Confidence 48999999999987 467899999999965 5788999887 999999999999983 1 1
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEcchhhcc-CeeeeEEecccCC
Q 048139 69 LRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQ-GFDDAAWPLQTKT 114 (115)
Q Consensus 69 ~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~-~~~~~~~~L~~~~ 114 (115)
...|.|+||+++..++++|||++.+++..+... +....||+|.++.
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 257899999999888899999999999999876 5677899997764
No 21
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.90 E-value=2.1e-22 Score=117.93 Aligned_cols=105 Identities=23% Similarity=0.316 Sum_probs=91.7
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCC
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSH 80 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~ 80 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+. ...++|+++++ +.+|.|+|.|.|.+.. ....|.++|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 357899999999999988888889999999984 34788999887 9999999999999853 2468999999999
Q ss_pred CCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
..+++++||++.+++.++..++....|+.|++
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence 88889999999999999987777888989864
No 22
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.90 E-value=3.2e-22 Score=117.33 Aligned_cols=104 Identities=24% Similarity=0.373 Sum_probs=89.2
Q ss_pred cCceEEEEEeeecCCCCCCC-CCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEW-ISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~ 77 (115)
..+.|.|.|++|++|+..+. .+.+|||+++.+. ..+++|+++++ +.||.|||+|.|.+.. ....|.|+||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 46789999999999987654 4779999999884 23678998876 9999999999999853 3467999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ 111 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~ 111 (115)
|++..+++++||++.+++..+...+....|++|.
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9998889999999999999998887788898884
No 23
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.90 E-value=3.3e-22 Score=114.49 Aligned_cols=93 Identities=15% Similarity=0.333 Sum_probs=81.1
Q ss_pred ceEEEEEeeecCCCCCCCC----CCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC--CCceEEEEEEeCCCC
Q 048139 9 LPLEITVVGCYNLDDKEWI----SRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE--GLRELNVVVWNSHTL 82 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~----~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~L~~~v~~~~~~ 82 (115)
|.|.|+|++|++|+..+.. +.+|||+++.++...++|+++.+ +.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 6899999999999986543 24799999999988999999987 9999999999999843 335799999999988
Q ss_pred CCCceeEEEEEEcchhhccC
Q 048139 83 TPDEFIGSGRIQLHKALSQG 102 (115)
Q Consensus 83 ~~~~~lG~~~v~l~~l~~~~ 102 (115)
+++++||++.++|+++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 99999999999999997743
No 24
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.90 E-value=1.4e-22 Score=118.86 Aligned_cols=106 Identities=26% Similarity=0.402 Sum_probs=91.6
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCC-----CceEEEEEEeCCCCC
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEG-----LRELNVVVWNSHTLT 83 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~L~~~v~~~~~~~ 83 (115)
+|+|+|++|++|+..+..+.+||||.+.+.. .+++|+++.+++.+|.|||.|.|.+... ...|.|+|||++..+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 5899999999999888888999999999987 7889998765589999999999999554 578999999998878
Q ss_pred CCceeEEEEEEcchhhccCee-----eeEEecccCCC
Q 048139 84 PDEFIGSGRIQLHKALSQGFD-----DAAWPLQTKTG 115 (115)
Q Consensus 84 ~~~~lG~~~v~l~~l~~~~~~-----~~~~~L~~~~~ 115 (115)
.+++||++.+++.++..+... ..||.|..+.|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g 117 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG 117 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC
Confidence 899999999999999886553 56888876554
No 25
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.90 E-value=1.9e-22 Score=116.11 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=81.1
Q ss_pred ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139 6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN 78 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~ 78 (115)
...+.|+|+|++|++|+ ..+.+|||+++.+.. .+++|++.++ +.||.|||+|.|.++. ....|.++|||
T Consensus 11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 35689999999999998 346689999999853 4778998886 9999999999999853 35679999999
Q ss_pred CCCCCCCceeEEEEEEcchhhccCeeeeE
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQGFDDAA 107 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~ 107 (115)
++.++++++||++.+++.++.......+|
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W 115 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVSMMLGAAQW 115 (118)
T ss_pred CCCCCCCceEEEEEEccccccCCccccch
Confidence 99999999999999999987443333333
No 26
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.90 E-value=1.7e-22 Score=118.52 Aligned_cols=104 Identities=26% Similarity=0.370 Sum_probs=88.7
Q ss_pred cCceEEEEEeeecCCCCCCCC-CCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWI-SRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~ 77 (115)
..+.|.|+|++|++|+..+.. +.+|||+++.+. ..+++|+++++ +.||.|||+|.|.+.. ....|.++||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 346899999999999988865 789999999984 23578999887 9999999999999843 3468999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ 111 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~ 111 (115)
|++..+++++||++.++|.++...+....||+|+
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9998889999999999999997666667788874
No 27
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.90 E-value=6e-22 Score=115.57 Aligned_cols=102 Identities=25% Similarity=0.328 Sum_probs=89.0
Q ss_pred EEEEEeeecCCCCCC-CCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139 11 LEITVVGCYNLDDKE-WISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 11 l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l 88 (115)
|.|+|.+|++|+... ..+.+||||.+.+... .++|+++.+ +.||.|||+|.|.+......|.|.|||++..+++++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceE
Confidence 789999999998753 4567899999999754 689999887 9999999999999976668999999999988899999
Q ss_pred EEEEEEcchhhccCeeeeEEecccC
Q 048139 89 GSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 89 G~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
|++.++++++...+....||+|.+.
T Consensus 81 G~~~i~l~~l~~~~~~~~w~~L~~~ 105 (121)
T cd08401 81 GKVAIKKEDLHKYYGKDTWFPLQPV 105 (121)
T ss_pred EEEEEEHHHccCCCCcEeeEEEEcc
Confidence 9999999999877777888898763
No 28
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.89 E-value=5e-22 Score=115.75 Aligned_cols=103 Identities=20% Similarity=0.305 Sum_probs=90.0
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF 87 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~ 87 (115)
|.|.|+|++|++|++.+..+.+|||+++.+.+ ..++|+++.+ +.+|.|+|.|.|.+......|.|+|||++..+++++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence 57999999999999988888999999999975 5688888776 999999999999986666799999999998888999
Q ss_pred eEEEEEEcchhhccCeeeeEEecccC
Q 048139 88 IGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 88 lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
||++.+++.++... ....||.|.+.
T Consensus 80 IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 80 LGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred eeEEEEeHHHhhCC-CCCceEEecCC
Confidence 99999999999876 55778866554
No 29
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.89 E-value=6.4e-22 Score=115.32 Aligned_cols=102 Identities=26% Similarity=0.440 Sum_probs=90.0
Q ss_pred ceEEEEEeeecCCCCCCC------CCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCC
Q 048139 9 LPLEITVVGCYNLDDKEW------ISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHT 81 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~------~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~ 81 (115)
|.|+|+|++|++|+..+. .+.+||||++.++...++|+++.+ +.+|.|+|.|.|.+.. ....|.++|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKE-NLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCC-CCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 579999999999987654 357899999999999999999887 9999999999999853 56789999999987
Q ss_pred CCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 82 LTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 82 ~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
. ++++||++.+++.++..++....|++|.+
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 109 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLED 109 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcC
Confidence 7 88999999999999988887788999875
No 30
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.89 E-value=7.9e-22 Score=117.15 Aligned_cols=93 Identities=23% Similarity=0.377 Sum_probs=84.8
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCC
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPD 85 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~ 85 (115)
..|.|.|+|++|++|+..+..+.+||||++.++...++|+++.+ +.||.|||.|.|.+.. ....|.|+|||++..+++
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~-t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD-TLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCC-CCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence 34799999999999998888899999999999999999999887 9999999999999854 456899999999988889
Q ss_pred ceeEEEEEEcchhhc
Q 048139 86 EFIGSGRIQLHKALS 100 (115)
Q Consensus 86 ~~lG~~~v~l~~l~~ 100 (115)
++||++.+++.++..
T Consensus 92 ~~lG~~~i~l~~l~~ 106 (136)
T cd08375 92 DFLGRTEIRVADILK 106 (136)
T ss_pred CeeEEEEEEHHHhcc
Confidence 999999999999986
No 31
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.89 E-value=1.1e-21 Score=114.12 Aligned_cols=102 Identities=23% Similarity=0.348 Sum_probs=89.5
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l 88 (115)
|.|+|+|++|++|+..+..+.+|||+.+.+....++|+++.+ +.||.|+|+|.|.+......|.|+|||++..+++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYK-TLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecC-CcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCcee
Confidence 579999999999998888888999999999988899999887 9999999999999866567899999999887889999
Q ss_pred EEEEEEcchhhccCeeeeEEecccC
Q 048139 89 GSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 89 G~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
|++.+++.++..+ ...|+.|.++
T Consensus 80 G~~~~~l~~~~~~--~~~~~~l~~~ 102 (119)
T cd08377 80 GKVAIPLLSIKNG--ERKWYALKDK 102 (119)
T ss_pred eEEEEEHHHCCCC--CceEEECccc
Confidence 9999999998654 2467787654
No 32
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.89 E-value=1.1e-21 Score=114.53 Aligned_cols=102 Identities=25% Similarity=0.306 Sum_probs=88.8
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeE
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIG 89 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG 89 (115)
|.|+|++|++|+..+..+.+||||++.+.+. ..+|+++.+ +.||.|||.|.|.+......|.|+|||++..++++++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999998899999999999765 469999887 99999999999999766679999999999888999999
Q ss_pred EEEEEcchhhccCe-eeeEEecccC
Q 048139 90 SGRIQLHKALSQGF-DDAAWPLQTK 113 (115)
Q Consensus 90 ~~~v~l~~l~~~~~-~~~~~~L~~~ 113 (115)
++.+++.++...+. ...|++|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~W~~L~~~ 105 (121)
T cd04054 81 KVSLTREVISAHPRGIDGWMNLTEV 105 (121)
T ss_pred EEEEcHHHhccCCCCCCcEEECeee
Confidence 99999998876433 5667788653
No 33
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.89 E-value=1.3e-21 Score=118.92 Aligned_cols=107 Identities=19% Similarity=0.302 Sum_probs=90.5
Q ss_pred ccCceEEEEEeeecCCCCCC------------------------------CCCCCCcEEEEEECCeE-EEEEEecCCCCC
Q 048139 6 IQGLPLEITVVGCYNLDDKE------------------------------WISRQDPYVCLEYGSSK-YRTKTCTDGGKN 54 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~------------------------------~~~~~~p~~~~~~~~~~-~~t~~~~~~~~~ 54 (115)
+..|+|.|+|.+|++|++.+ ..+.+||||.+.+++.. .+|+++.+ +.|
T Consensus 4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~n 82 (158)
T cd04015 4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SEN 82 (158)
T ss_pred EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCC
Confidence 45789999999999999865 24557999999998654 69999887 899
Q ss_pred CeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139 55 PTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 55 P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
|.|||+|.|.+......|.|+|||++..+ +++||++.+++.++..++....|++|.+.+
T Consensus 83 P~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~ 141 (158)
T cd04015 83 PVWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN 141 (158)
T ss_pred CccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC
Confidence 99999999998655678999999998764 579999999999998877778899987643
No 34
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.89 E-value=7.6e-22 Score=115.59 Aligned_cols=105 Identities=22% Similarity=0.317 Sum_probs=90.1
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCC
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSH 80 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~ 80 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+. ...++|+++++ +.||.|||.|.|.+.. ....|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 567899999999999988888889999999884 34678998876 9999999999999853 2468999999999
Q ss_pred CCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
..+++++||++.+++.++..+....+|+.|.+
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEccC
Confidence 88889999999999999877666778888753
No 35
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.89 E-value=6.5e-22 Score=115.15 Aligned_cols=101 Identities=23% Similarity=0.299 Sum_probs=88.4
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCc
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDE 86 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~ 86 (115)
|.|+|++|++|+..+..+.+||||++.+. ...++|+++.+ +.||.|||+|.|.+.. ....|.|+|||++.. +++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 78999999999988878889999999985 35789999887 9999999999999854 345799999999977 889
Q ss_pred eeEEEEEEcchhhccCeeeeEEecccC
Q 048139 87 FIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 87 ~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
+||++.+++.++..+.....|++|.++
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~ 106 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQ 106 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCC
Confidence 999999999999887778888998764
No 36
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.89 E-value=3.9e-22 Score=116.05 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=86.1
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC--CCceEEEEEEeC
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE--GLRELNVVVWNS 79 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~L~~~v~~~ 79 (115)
..+.|.|+|++|++|+..+ .+.+||||++.+.. .+++|+++++ +.+|.|||+|.|.+.. ....|.++||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 5689999999999998887 77899999999852 3678998876 9999999999999843 235688999998
Q ss_pred CCCC-CCceeEEEEEEcchhhccCeeeeEEec
Q 048139 80 HTLT-PDEFIGSGRIQLHKALSQGFDDAAWPL 110 (115)
Q Consensus 80 ~~~~-~~~~lG~~~v~l~~l~~~~~~~~~~~L 110 (115)
+... ++++||.+.+++.++..++...+||.|
T Consensus 88 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 8765 478999999999999876667888876
No 37
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.89 E-value=7.7e-22 Score=116.81 Aligned_cols=103 Identities=23% Similarity=0.372 Sum_probs=88.7
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-------EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCC
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-------KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTL 82 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-------~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~ 82 (115)
.|+|+|++|++|+..+..+.+|||+++.+... .++|+++.+ +.+|.|||+|.|.+......|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPREHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCCCEEEEEEEECCCC
Confidence 48999999999999888889999999998643 578988876 9999999999999976567899999999988
Q ss_pred CCCceeEEEEEEcchhhccCe------eeeEEecccC
Q 048139 83 TPDEFIGSGRIQLHKALSQGF------DDAAWPLQTK 113 (115)
Q Consensus 83 ~~~~~lG~~~v~l~~l~~~~~------~~~~~~L~~~ 113 (115)
+++++||++.+++.++..... ...||+|.++
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~ 116 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence 889999999999999987543 3478888754
No 38
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.88 E-value=8.9e-22 Score=115.81 Aligned_cols=103 Identities=30% Similarity=0.347 Sum_probs=86.7
Q ss_pred cCceEEEEEeeecCCCCCCCC-CCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWI-SRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~ 77 (115)
..+.|.|+|++|++|+..+.. +.+||||++.+. ..+++|+++++ +.||.|||+|.|.+.. ....|.+.||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 357899999999999988764 889999999985 23778999876 9999999999999854 3578999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccC---eeeeEEec
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQG---FDDAAWPL 110 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~---~~~~~~~L 110 (115)
+.+..+++++||++.++|.++.... ....||+|
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9998889999999999999985532 44578887
No 39
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.88 E-value=1.3e-21 Score=114.94 Aligned_cols=104 Identities=30% Similarity=0.328 Sum_probs=89.8
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+..+.+||||++.+. ...++|+++++ +.||.|||+|.|.+.. ....|.+.||+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 357899999999999998888889999999985 45789999887 9999999999999843 24689999999
Q ss_pred CCCC--CCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139 79 SHTL--TPDEFIGSGRIQLHKALSQGFDDAAWPLQ 111 (115)
Q Consensus 79 ~~~~--~~~~~lG~~~v~l~~l~~~~~~~~~~~L~ 111 (115)
.+.. +++++||++.+++.++..++....||+|.
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 8864 67899999999999998777778898874
No 40
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.88 E-value=2.7e-21 Score=113.18 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=86.9
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEEC-CeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCC--Cc
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYG-SSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTP--DE 86 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~--~~ 86 (115)
.|+|+|++|++|+..+..+.+||||++.+. ...++|+++.+ +.||.|||.|.|.+.. ...|.++|||++..++ ++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCc
Confidence 489999999999998888899999999996 67889999886 9999999999999965 5789999999987765 57
Q ss_pred eeEEEEEEcchhhccCe-eeeEEecccC
Q 048139 87 FIGSGRIQLHKALSQGF-DDAAWPLQTK 113 (115)
Q Consensus 87 ~lG~~~v~l~~l~~~~~-~~~~~~L~~~ 113 (115)
+||++.+++.++..... ...|++|...
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 106 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKL 106 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecC
Confidence 99999999999976543 3567777443
No 41
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.88 E-value=2e-21 Score=111.86 Aligned_cols=91 Identities=22% Similarity=0.426 Sum_probs=80.4
Q ss_pred ceEEEEEeeecCCCCCCCC-CCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEEeCC
Q 048139 9 LPLEITVVGCYNLDDKEWI-SRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVWNSH 80 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~~~~ 80 (115)
|.|+|+|++|++|+..+.. +.+||||++.+. ...++|+++++ +.||.|+|.|.|.+.. ....|.++|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 6899999999999988877 889999999884 34689999887 9999999999998743 3468999999999
Q ss_pred CCCCCceeEEEEEEcchhhc
Q 048139 81 TLTPDEFIGSGRIQLHKALS 100 (115)
Q Consensus 81 ~~~~~~~lG~~~v~l~~l~~ 100 (115)
..+++++||++.+++.++..
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCCcceEEEEEHHHHhc
Confidence 88889999999999999985
No 42
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=2e-21 Score=113.89 Aligned_cols=103 Identities=30% Similarity=0.389 Sum_probs=86.2
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~ 77 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+.. .+++|+++++ +.+|.|+|+|.|.+.. ....|.|+||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 4578999999999999888888899999999853 5778998887 9999999999998632 3568999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ 111 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~ 111 (115)
|++..+++++||++.+++.+... .....||+|.
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 99988889999999999998433 3346788873
No 43
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=1.4e-21 Score=113.97 Aligned_cols=98 Identities=24% Similarity=0.371 Sum_probs=84.8
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCceeE
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFIG 89 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~lG 89 (115)
|.|+|++|++|+.. .+||||++.+.....+|+++++ +.||.|||+|.|.+.. ....|.++|||++.. ++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 78999999999876 6799999999988999999887 9999999999999854 567899999999866 788999
Q ss_pred EEEEEcchhhccC-----eeeeEEecccCC
Q 048139 90 SGRIQLHKALSQG-----FDDAAWPLQTKT 114 (115)
Q Consensus 90 ~~~v~l~~l~~~~-----~~~~~~~L~~~~ 114 (115)
++.++++++...+ ....||+|.++.
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~ 105 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKK 105 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence 9999999987643 245788998765
No 44
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.88 E-value=3.9e-21 Score=112.69 Aligned_cols=105 Identities=21% Similarity=0.256 Sum_probs=89.7
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEEeC
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVWNS 79 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~~~ 79 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+. ....+|+++.+ +.+|.|||+|.|...+ ....|.++|||+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 457899999999999988888889999999883 45789999887 9999999999997522 345799999999
Q ss_pred CCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
+..+++++||++.+++.++...+....|+.|.+
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 988889999999999999987767778888864
No 45
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.88 E-value=3.7e-21 Score=115.78 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=86.1
Q ss_pred eEEEEEeeecCCCCCCCCC--------------CCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEee--cCCCceEE
Q 048139 10 PLEITVVGCYNLDDKEWIS--------------RQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL--IEGLRELN 73 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~--------------~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~--~~~~~~L~ 73 (115)
.|.|+|++|++|+..+..+ .+||||++.+.+.+.+|+++++ +.||.|||+|.|.+ ......|.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcC-CCCCCcceEEEEEeeCCCcCCEEE
Confidence 4789999999999876443 5899999999999999999887 99999999999996 23456899
Q ss_pred EEEEeCCCCCCCceeEEEEEEcchhhccCe-------eeeEEecccC
Q 048139 74 VVVWNSHTLTPDEFIGSGRIQLHKALSQGF-------DDAAWPLQTK 113 (115)
Q Consensus 74 ~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~-------~~~~~~L~~~ 113 (115)
|+|||++..++|+++|++.+++.++...+. ...|+.|.+.
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999988899999999999999977653 2355566543
No 46
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.88 E-value=3e-21 Score=112.80 Aligned_cols=103 Identities=25% Similarity=0.395 Sum_probs=88.2
Q ss_pred cCceEEEEEeeecCCCCCC-CCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKE-WISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~ 77 (115)
..+.|.|+|++|++|+..+ ..+.+||||++.+. ..+++|+++++ +.+|.|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 4678999999999999877 67789999999874 14678888776 9999999999999854 2468999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccCeeeeEEec
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPL 110 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L 110 (115)
|++..+++++||++.+++.++...+....||+|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999888899999999999999776667788876
No 47
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.87 E-value=2.3e-21 Score=113.37 Aligned_cols=103 Identities=25% Similarity=0.287 Sum_probs=86.8
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC------CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG------SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~------~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~ 77 (115)
..+.|.|+|++|+||+..+..+.+|||+++.+. ..+++|++.++ +.||.|||+|.|.+.. ....|.++||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 457899999999999988777889999999974 23788998876 9999999999999854 4678999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccC-eeeeEEec
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQG-FDDAAWPL 110 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~-~~~~~~~L 110 (115)
+++..+++++||.+.++|.++...+ ....||.|
T Consensus 91 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9998889999999999999995543 34557665
No 48
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.87 E-value=7.6e-21 Score=111.92 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=86.3
Q ss_pred cCceEEEEEeeecCCCCCCCC-CCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEe-ecC---CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWI-SRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLP-LIE---GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+.. +.+||||++.+. ..+.+|+++++ +.||.|||+|.|. +.. ....|.++||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 457899999999999987765 789999999885 44678999887 9999999999994 432 33579999999
Q ss_pred CCCCCCCceeEEEEEEcchhhcc--CeeeeEEeccc
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQ--GFDDAAWPLQT 112 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~--~~~~~~~~L~~ 112 (115)
++..+++++||++.++|.++.-. +....|.+|++
T Consensus 93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred cCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 99888999999999999998554 55566767753
No 49
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.87 E-value=5.3e-21 Score=114.52 Aligned_cols=91 Identities=26% Similarity=0.486 Sum_probs=83.5
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l 88 (115)
|.|.|+|++|++|+..+. +.+|||+++.++...++|+++.+ +.||.|+|+|.|.+......+.|+|||++..++|++|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~-t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~i 79 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKK-NLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSM 79 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcC-CCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEE
Confidence 689999999999987776 78999999999999999999887 9999999999999976678899999999988899999
Q ss_pred EEEEEEcchhhcc
Q 048139 89 GSGRIQLHKALSQ 101 (115)
Q Consensus 89 G~~~v~l~~l~~~ 101 (115)
|++.+++.++...
T Consensus 80 G~a~i~l~~l~~~ 92 (145)
T cd04038 80 GEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEHHHhhhh
Confidence 9999999998764
No 50
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.87 E-value=3.1e-21 Score=114.78 Aligned_cols=102 Identities=29% Similarity=0.469 Sum_probs=89.7
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEEC----CeEEEEEEecCCCCCCeeceeEEEeecC----------------CCc
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYG----SSKYRTKTCTDGGKNPTFQEKFVLPLIE----------------GLR 70 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~----~~~~~t~~~~~~~~~P~w~e~~~~~~~~----------------~~~ 70 (115)
|+|+|++|++|+.. ..+.+|||+++.+. ...++|+++.+ +.+|.|+|.|.|.+.. ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57999999999888 77889999999998 67899999887 9999999999999843 245
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139 71 ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 71 ~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
.|.|+|||++..+++++||++.+++.++...+....||.|.++.
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 89999999998888999999999999998777788899998764
No 51
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.87 E-value=6.5e-21 Score=111.48 Aligned_cols=99 Identities=22% Similarity=0.286 Sum_probs=85.5
Q ss_pred ceEEEEEeeecCCCCCCC-CCCCCcEEEEEECC--eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCC
Q 048139 9 LPLEITVVGCYNLDDKEW-ISRQDPYVCLEYGS--SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPD 85 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~--~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~ 85 (115)
|.|+|+|++|++|+.... .+.+||||.+.+.. ..++|+++.+ +.+|.|||.|.|.+......|.|+|||++..+++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 679999999999986553 45689999999987 7899999887 9999999999999876678999999999988889
Q ss_pred ceeEEEEEEcchhhccCeeeeEE
Q 048139 86 EFIGSGRIQLHKALSQGFDDAAW 108 (115)
Q Consensus 86 ~~lG~~~v~l~~l~~~~~~~~~~ 108 (115)
++||++.+++.++..++....++
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~~~~ 103 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQENLT 103 (124)
T ss_pred ceeEEEEEEHHHhccCccccCcc
Confidence 99999999999998876654433
No 52
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.87 E-value=8.1e-21 Score=111.03 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=89.4
Q ss_pred cCceEEEEEeeecCCCCCC-CCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeC
Q 048139 7 QGLPLEITVVGCYNLDDKE-WISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNS 79 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~ 79 (115)
..+.|.|+|++|++|+..+ ..+.+|||+++.+. ....+|+++.+ +.+|.|+|.|.|.+.. ....|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 4578999999999999887 57789999999873 34678888877 9999999999999843 235799999999
Q ss_pred CCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139 80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ 111 (115)
Q Consensus 80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~ 111 (115)
+..+++++||++.+++.++........|++|.
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 98888999999999999998888778888885
No 53
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.87 E-value=1.2e-20 Score=111.02 Aligned_cols=102 Identities=31% Similarity=0.483 Sum_probs=87.0
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCC-------
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTL------- 82 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~------- 82 (115)
.|+|+|++|++|+..+..+.+|||+.+.++...++|+++.+ +.+|.|+|.|.|.+......|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~-t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQ-NLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecC-CCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence 58999999999998888888999999999888899999877 9999999999999855557899999998742
Q ss_pred ----CCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139 83 ----TPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 83 ----~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
+.+++||++.+++.++. +....|+.|.++.
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~ 114 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRT 114 (127)
T ss_pred eccccCCCcceEEEEEhHHcc--CCCCeEEECccCC
Confidence 46889999999999874 3456788887653
No 54
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.87 E-value=1.3e-20 Score=110.64 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=86.3
Q ss_pred CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139 8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF 87 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~ 87 (115)
...|+|+|++|++|...+..+.+||||.+.+++..++|+++.+ +.+|.|+|.|.|.+......|.|+|||++.. .+++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~ 79 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKD-TLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF 79 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCC-CCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence 4679999999999998888889999999999999999999886 9999999999998866677899999999866 5899
Q ss_pred eEEEEEEcchhhccCeeeeEEecc
Q 048139 88 IGSGRIQLHKALSQGFDDAAWPLQ 111 (115)
Q Consensus 88 lG~~~v~l~~l~~~~~~~~~~~L~ 111 (115)
||.+.+++.++. +....+|+|.
T Consensus 80 lG~~~~~l~~~~--~~~~~~~~l~ 101 (126)
T cd04046 80 LGQATLSADPND--SQTLRTLPLR 101 (126)
T ss_pred eEEEEEecccCC--CcCceEEEcc
Confidence 999999998754 3344667774
No 55
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.86 E-value=1.4e-20 Score=108.29 Aligned_cols=100 Identities=23% Similarity=0.319 Sum_probs=84.8
Q ss_pred CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-C----CceEEEEEEeCCCC
Q 048139 8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-G----LRELNVVVWNSHTL 82 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~----~~~L~~~v~~~~~~ 82 (115)
...|+|+|++|++|+ .+.+|||+++.+++.+++|+++.+ +.+|.|+|+|.|.+.. . ...|.|+|||++..
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 346899999999998 467899999999999999999876 8999999999999732 1 35799999999988
Q ss_pred CCCceeEEEEEEcchhhcc---CeeeeEEeccc
Q 048139 83 TPDEFIGSGRIQLHKALSQ---GFDDAAWPLQT 112 (115)
Q Consensus 83 ~~~~~lG~~~v~l~~l~~~---~~~~~~~~L~~ 112 (115)
+++++||++.++++.+..+ +....|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8899999999999999765 33456888865
No 56
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.86 E-value=1.7e-20 Score=110.26 Aligned_cols=97 Identities=25% Similarity=0.375 Sum_probs=85.8
Q ss_pred EeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCCCCceeEEE
Q 048139 15 VVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLTPDEFIGSG 91 (115)
Q Consensus 15 i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~~~~~lG~~ 91 (115)
|++|++|+. ..+.+|||+++.+....++|+++++ +.+|.|+|+|.|.+.. ....|.++|||++..+++++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence 678999987 6778999999999988999999887 8999999999999843 467899999999988889999999
Q ss_pred EEEcchhhccCeeeeEEecccCC
Q 048139 92 RIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 92 ~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
.+++.++..++....|++|.++.
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~ 101 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSN 101 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCC
Confidence 99999999888888889987554
No 57
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.86 E-value=3.9e-20 Score=109.45 Aligned_cols=103 Identities=22% Similarity=0.426 Sum_probs=87.1
Q ss_pred CceEEEEEeeecCCCCCCCC----------CCCCcEEEEEECCeE-EEEEEecCCCCCCeeceeEEEeecCCCceEEEEE
Q 048139 8 GLPLEITVVGCYNLDDKEWI----------SRQDPYVCLEYGSSK-YRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVV 76 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~----------~~~~p~~~~~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v 76 (115)
.|.|+|+|++|++|+..+.. +..||||++.+++.. .+|+++.+ +.+|.|||+|.|.+. ....|.|+|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~-~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVH-NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcC-CCCEEEEEE
Confidence 47799999999999877652 568999999998754 68888776 999999999999996 447899999
Q ss_pred EeCCCCCCCceeEEEEEEcchhhc--cCeeeeEEeccc
Q 048139 77 WNSHTLTPDEFIGSGRIQLHKALS--QGFDDAAWPLQT 112 (115)
Q Consensus 77 ~~~~~~~~~~~lG~~~v~l~~l~~--~~~~~~~~~L~~ 112 (115)
|+++..++++++|++.++|.++.. .+....|++|.+
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 118 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP 118 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC
Confidence 999888889999999999999987 455677778863
No 58
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.86 E-value=1.9e-20 Score=109.70 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=87.4
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEe-ecC---CCceEEEEEEeC
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLP-LIE---GLRELNVVVWNS 79 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~~~L~~~v~~~ 79 (115)
..+.|.|+|++|++|+..+..+..+||+++.+. ..+++|++.+ +.||.|||+|.|. +.. ....|.++||++
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~--~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR--GPNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc--CCCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 346899999999999988877888999997763 3577888764 3899999999998 543 457899999999
Q ss_pred CCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
+..+++++||++.++|+++...+....|++|.+
T Consensus 92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 988899999999999999977777778888864
No 59
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.86 E-value=1.1e-20 Score=115.24 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=88.1
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeec-C---CCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLI-E---GLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~-~---~~~~L~~~v~ 77 (115)
..+.|.|+|++|++|+..+..+.+||||++.+. ...++|+++.+ +.||.|||.|.|.+. . ....|.|+||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 458899999999999988888889999999873 35789999887 999999999999852 2 2357999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ 111 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~ 111 (115)
|++..+++++||++.+++.++...+....|+.|.
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 9998888999999999999987766666666664
No 60
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.86 E-value=2.3e-20 Score=110.24 Aligned_cols=107 Identities=26% Similarity=0.354 Sum_probs=91.3
Q ss_pred cccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCC--CceEEEEEE
Q 048139 5 GIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG--LRELNVVVW 77 (115)
Q Consensus 5 ~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~L~~~v~ 77 (115)
+...+.|.|+|++|++|+..+..+.+|||+.+.+. ...++|+++.+ +.+|.|+|+|.|.+... ...|.++||
T Consensus 9 ~~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~ 87 (131)
T cd04026 9 SVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEVW 87 (131)
T ss_pred EECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEEE
Confidence 45668999999999999987777889999999985 35789999887 99999999999998543 467999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
|++..+++++||++.+++.++... ....||+|.+.
T Consensus 88 d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 88 DWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred ECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 998888899999999999999765 56778888664
No 61
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.85 E-value=1.7e-20 Score=109.96 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=80.1
Q ss_pred CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEee-c-CCCceEEEEEEeCCCCCCC
Q 048139 8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL-I-EGLRELNVVVWNSHTLTPD 85 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~-~-~~~~~L~~~v~~~~~~~~~ 85 (115)
.+.|+|+|++|++|+. +..+.+|||+++.+.+..++|+++++ +.+|.|||+|.|.. . .....|.|+|||++..+++
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 4799999999999974 56778999999999988999999987 99999999999974 2 3567899999999988899
Q ss_pred ceeEEEEEEcchhhc
Q 048139 86 EFIGSGRIQLHKALS 100 (115)
Q Consensus 86 ~~lG~~~v~l~~l~~ 100 (115)
++||++.+++.....
T Consensus 105 d~IG~~~i~l~~~~~ 119 (127)
T cd04032 105 DLLGTCSVVPEAGVH 119 (127)
T ss_pred CeeEEEEEEecCCce
Confidence 999999999987653
No 62
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.85 E-value=4.8e-20 Score=106.60 Aligned_cols=103 Identities=24% Similarity=0.385 Sum_probs=88.9
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCcee
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~l 88 (115)
|+|+|++|++|+..+..+.+||||++.+.+ ..++|+++.+ +.+|.|+|+|.|.+.. ....+.|+|||++..+++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence 578999999999888788899999999864 4578998876 9999999999999854 467899999999988889999
Q ss_pred EEEEEEcchhhccCeeeeEEecccCC
Q 048139 89 GSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 89 G~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
|++.+++.++..+.....|++|.++.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g 105 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQG 105 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCC
Confidence 99999999998876677788887654
No 63
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.85 E-value=1.2e-19 Score=106.59 Aligned_cols=100 Identities=24% Similarity=0.361 Sum_probs=84.0
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCc
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDE 86 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~ 86 (115)
..|+|+|++|++|+.. +.+||||++.+++. ..+|++ .+ +.||.|||.|.|.+.+ ....+.|.|||++..++++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 4699999999999864 36799999999864 467876 44 8999999999998643 3367899999999888999
Q ss_pred eeEEEEEEcchhhccCeeeeEEecccC
Q 048139 87 FIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 87 ~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
+||++.+++..+..++....|+.|.+.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~ 105 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSA 105 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccC
Confidence 999999999999887777788888754
No 64
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.85 E-value=8.9e-21 Score=112.28 Aligned_cols=104 Identities=21% Similarity=0.331 Sum_probs=84.7
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+. ...++|+++++ +.+|.|||+|.|.+.. ....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 468899999999999998888889999999984 24678999886 9999999999999843 24679999999
Q ss_pred CCCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
++..+++++||++.+++.. .+.....|+.++..
T Consensus 90 ~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred CCCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 9988889999999999975 22233455555443
No 65
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.85 E-value=1.3e-19 Score=106.33 Aligned_cols=103 Identities=22% Similarity=0.262 Sum_probs=85.8
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECC---eEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCC
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTP 84 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~ 84 (115)
+.|+|+|++|++|+..+..+..|||+.+.+.. ..++|+++.+ +.+|.|||+|.|.+.. ....|.|+|||++..++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~ 79 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGK 79 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCC
Confidence 35899999999999888888899999998763 3679999876 8999999999999965 45789999999998888
Q ss_pred CceeEEEEEEcchhhcc---CeeeeEEeccc
Q 048139 85 DEFIGSGRIQLHKALSQ---GFDDAAWPLQT 112 (115)
Q Consensus 85 ~~~lG~~~v~l~~l~~~---~~~~~~~~L~~ 112 (115)
+++||++.+++.++... .....|+.|.+
T Consensus 80 ~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~ 110 (126)
T cd04043 80 HDLCGRASLKLDPKRFGDDGLPREIWLDLDT 110 (126)
T ss_pred CceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence 99999999999987543 24456778754
No 66
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.84 E-value=5.4e-20 Score=107.21 Aligned_cols=99 Identities=25% Similarity=0.452 Sum_probs=83.8
Q ss_pred EeeecCCCCCCCCCCCCcEEEEEECCe-------EEEEEEecCCCCCCeeceeEEEeec-CCCceEEEEEEeCCC----C
Q 048139 15 VVGCYNLDDKEWISRQDPYVCLEYGSS-------KYRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVVVWNSHT----L 82 (115)
Q Consensus 15 i~~a~~l~~~~~~~~~~p~~~~~~~~~-------~~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~v~~~~~----~ 82 (115)
.++|++|+..+..+.+|||+++.+... .++|+++.+ +.||.|+|.|.|.+. +....|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 467899998888899999999998643 489999887 999999999999863 355689999999986 7
Q ss_pred CCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139 83 TPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 83 ~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
+++++||++.+++.++........++.|.+..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~~ 116 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKGGK 116 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccCCC
Confidence 88999999999999999876667788885543
No 67
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.84 E-value=1.9e-19 Score=106.89 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=84.1
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC----------CCceEEEEEEeC
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE----------GLRELNVVVWNS 79 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~----------~~~~L~~~v~~~ 79 (115)
.|+|.|.+|++|+..+..+.+|||+++.+....++|+++.+ +.||.|+|.|.|.+.. ....|.++|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 48899999999999888899999999999999999999887 9999999999997421 124689999999
Q ss_pred CCCCCCceeEEEEE-Ecchhhc---cCeeeeEEecccC
Q 048139 80 HTLTPDEFIGSGRI-QLHKALS---QGFDDAAWPLQTK 113 (115)
Q Consensus 80 ~~~~~~~~lG~~~v-~l~~l~~---~~~~~~~~~L~~~ 113 (115)
+..+++++||++.+ ++..+.. .....+|++|...
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~ 118 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG 118 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC
Confidence 98888999999986 4444433 2345678788643
No 68
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.84 E-value=1e-19 Score=109.69 Aligned_cols=99 Identities=25% Similarity=0.324 Sum_probs=83.8
Q ss_pred ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----------------------------eEEEEEEecCCCCCCe
Q 048139 6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----------------------------SKYRTKTCTDGGKNPT 56 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----------------------------~~~~t~~~~~~~~~P~ 56 (115)
.....|.|+|++|++|+..+..|.+||||++.+.. ..++|+++.+ +.+|.
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~ 103 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNPV 103 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCCc
Confidence 45678999999999999999889999999998852 2367888776 99999
Q ss_pred eceeEEEeecC-CCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEec
Q 048139 57 FQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPL 110 (115)
Q Consensus 57 w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L 110 (115)
|||+|.|.+.. ....|.|+|||++ +++||++.++++++... ....||+|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 99999999854 4578999999987 78999999999999854 35778876
No 69
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.84 E-value=8.3e-20 Score=108.18 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=81.3
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-------CeEEEEEEecCCCCCCeeceeEEEeecC-----CCceEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-------SSKYRTKTCTDGGKNPTFQEKFVLPLIE-----GLRELNV 74 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-------~~~~~t~~~~~~~~~P~w~e~~~~~~~~-----~~~~L~~ 74 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+. ...++|+++++ +.+|.|||.|.|.+.. ....|.|
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence 346899999999999988888889999999985 34789999887 9999999999999843 2468999
Q ss_pred EEEeCCCCCCCceeEEEEEEcchhhc
Q 048139 75 VVWNSHTLTPDEFIGSGRIQLHKALS 100 (115)
Q Consensus 75 ~v~~~~~~~~~~~lG~~~v~l~~l~~ 100 (115)
+|||++..+++++||++.+++.++..
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999988889999999999999975
No 70
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.83 E-value=2.8e-20 Score=110.11 Aligned_cols=105 Identities=19% Similarity=0.188 Sum_probs=86.9
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+.. ..++|+++.+ +.+|.|+|+|.|.+... ...|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 3578999999999999888788899999998853 2668888876 89999999999998543 4789999999
Q ss_pred CCCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
.+..+++++||++.+++.+ .+.....|+.|.+.+
T Consensus 91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 9887889999999999999 444456677776654
No 71
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.83 E-value=4.6e-20 Score=109.62 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=82.7
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+.. .+++|+++++ +.||.|+|+|.|.+.. ....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 3578999999999999888888999999998842 2567888776 9999999999999843 34578999999
Q ss_pred CCCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
++..+++++||++.+++.. .......|+.|..
T Consensus 92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 9988899999999999988 2222344445543
No 72
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.83 E-value=4.8e-19 Score=103.74 Aligned_cols=90 Identities=28% Similarity=0.403 Sum_probs=78.3
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeE--EEEEEecCCCCCCeeceeEEEeec-CCCceEEEEEEeCCCCCCCc
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSK--YRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVVVWNSHTLTPDE 86 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~v~~~~~~~~~~ 86 (115)
.|+|.|++|++|+..+..+.+|||+++.++... .+|+++.+ +.+|.|||.|.|.+. +....|.|+|||++..++++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 478999999999998888899999999998654 56777776 999999999999874 44578999999999888999
Q ss_pred eeEEEEEEcchhhc
Q 048139 87 FIGSGRIQLHKALS 100 (115)
Q Consensus 87 ~lG~~~v~l~~l~~ 100 (115)
+||++.+++.+..-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999987753
No 73
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.82 E-value=8.8e-20 Score=108.35 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=76.3
Q ss_pred cCceEEEEEeeecCCCCCCC--CCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEW--ISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVV 76 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v 76 (115)
..+.|.|.|++|+||+..+. .+.+||||++.+.. .+++|++.++ +.||+|||.|.|.++. ....|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEE
Confidence 46789999999999998763 34589999999853 2668888876 9999999999999954 356799999
Q ss_pred EeCCCCCCCceeEEEEEEcch
Q 048139 77 WNSHTLTPDEFIGSGRIQLHK 97 (115)
Q Consensus 77 ~~~~~~~~~~~lG~~~v~l~~ 97 (115)
||++..+++++||++.+++..
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCCCcCcceeceEEecCcC
Confidence 999999999999999999864
No 74
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.82 E-value=6.7e-20 Score=108.93 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=77.9
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+. ...++|+++++ +.+|.|||.|.|.+.. ....|.|+|||
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 357899999999999988888899999999873 23578888876 9999999999999842 24579999999
Q ss_pred CCCCCCCceeEEEEEEcchh
Q 048139 79 SHTLTPDEFIGSGRIQLHKA 98 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l 98 (115)
++..+++++||++.+++...
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCCcEeEEEEECCccC
Confidence 99888899999999998875
No 75
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.81 E-value=1.1e-19 Score=107.92 Aligned_cols=89 Identities=25% Similarity=0.202 Sum_probs=76.2
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+..+.+||||++.+.. .+.+|++.++ +.||.|||+|.|.++. ....|.|+||+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 3568999999999999888788899999999842 2567888776 9999999999999853 45789999999
Q ss_pred CCCCCCCceeEEEEEEcc
Q 048139 79 SHTLTPDEFIGSGRIQLH 96 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~ 96 (115)
++..+++++||++.+...
T Consensus 92 ~d~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 92 STEDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCCCCCCeeEEEEECCC
Confidence 998889999999999765
No 76
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.81 E-value=9.1e-20 Score=108.36 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=77.1
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC--C---eEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG--S---SKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+. . ..++|+++++ +.+|.|+|+|.|.+... ...|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 457899999999999988888889999999984 2 3567888776 99999999999998532 3479999999
Q ss_pred CCCCCCCceeEEEEEEcch
Q 048139 79 SHTLTPDEFIGSGRIQLHK 97 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~ 97 (115)
++..+++++||++.+++..
T Consensus 92 ~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred CCCCCCCceeEEEEECCcc
Confidence 9988899999999999875
No 77
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.81 E-value=1.9e-19 Score=106.78 Aligned_cols=89 Identities=24% Similarity=0.310 Sum_probs=76.2
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~ 78 (115)
..+.|+|+|++|++|+..+..+.+|||+++.+. ...++|+++++ +.+|.|+|.|.|.+.. ....|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 457899999999999998888999999999874 13678888766 9999999999999843 23469999999
Q ss_pred CCCCCCCceeEEEEEEcc
Q 048139 79 SHTLTPDEFIGSGRIQLH 96 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~ 96 (115)
++..+++++||++.+++.
T Consensus 91 ~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 91 YDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCCCCCceeEEEEECCC
Confidence 998889999999999876
No 78
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.81 E-value=2.5e-20 Score=125.89 Aligned_cols=106 Identities=27% Similarity=0.343 Sum_probs=93.4
Q ss_pred ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC--CCceEEEEEEe
Q 048139 6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE--GLRELNVVVWN 78 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~L~~~v~~ 78 (115)
+....|+|+|..|+||-+.+.+|.+|||+++.+- ..+++|++++. +.||.|||+|.|.+.+ ..+.|.|+|||
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWD 255 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWD 255 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEec
Confidence 4567899999999999999999999999999984 35889999987 9999999999999943 56889999999
Q ss_pred CCCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
++..++++|+|...+.+++|++. ..+.||.|++.
T Consensus 256 WDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsq 289 (683)
T KOG0696|consen 256 WDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQ 289 (683)
T ss_pred ccccccccccceecccHHHHhhc-chhhHHHHhhh
Confidence 99999999999999999999874 46788887764
No 79
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.81 E-value=2.3e-18 Score=100.67 Aligned_cols=99 Identities=26% Similarity=0.374 Sum_probs=81.9
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-cC---CCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-IE---GLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~~---~~~~L~~~v~ 77 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+. ...++|+++.+ +.+|.|++.|.|.. .. ....|.++||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 357899999999999988878889999999873 24789999887 89999999999963 32 2468999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccCeeeeE
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAA 107 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~ 107 (115)
|++.. .+++||++.+++.++..++...-+
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCCCcceEee
Confidence 99877 889999999999999876544433
No 80
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.81 E-value=3.4e-18 Score=102.14 Aligned_cols=101 Identities=18% Similarity=0.260 Sum_probs=84.4
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeE-EEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCC----
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSK-YRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLT---- 83 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~---- 83 (115)
..|.|.|.+|++|+... ++||.+.+++.. .+|++..+ +.+|.|+|.|.|...+....|.|.||..+...
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 46899999999998643 799999999887 49999887 89999999999997655678999998654321
Q ss_pred CCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 84 PDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 84 ~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
++++||.+.||+..+..+.....||+|.+.+|
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~ 116 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKG 116 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeecCCC
Confidence 57899999999999998777889999887653
No 81
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.80 E-value=3.6e-18 Score=100.35 Aligned_cols=102 Identities=29% Similarity=0.450 Sum_probs=82.2
Q ss_pred eEEEEEeeecCCCCCC--CCCCCCcEEEEEEC------CeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCC
Q 048139 10 PLEITVVGCYNLDDKE--WISRQDPYVCLEYG------SSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSH 80 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~------~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~ 80 (115)
.|+|+|++|++|+..+ ..+..+||+.+.+. ..+++|+++.+.+.+|.|+|+|.|.+.. ....|.++|||.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999877 57789999999983 4568999877634599999999999853 3457899999998
Q ss_pred CCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
.. +++++|++.+++.++.. + ..++.|.++.|
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~-g--~~~~~l~~~~~ 113 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQ-G--YRHVPLLDSKG 113 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcC-c--eEEEEecCCCC
Confidence 77 88999999999999844 2 34567766543
No 82
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.80 E-value=3.5e-19 Score=105.75 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=80.5
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC--C---eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG--S---SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~---~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+..+.+|||+++.+. . ..++|+++++ +.||.|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 457899999999999998888899999999873 1 3578888776 9999999999999843 23469999999
Q ss_pred CCCCCCCceeEEEEEEcchhhccCe-eeeEEecccC
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQGF-DDAAWPLQTK 113 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~~~-~~~~~~L~~~ 113 (115)
++..+++++||++.+.... .++. ..+|..|.+.
T Consensus 91 ~d~~~~~~~iG~~~l~~~~--~~~~~~~~W~~l~~~ 124 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYS--SGPSETNHWRRMLNS 124 (135)
T ss_pred CCCCCCCcEEEEEEEcCcc--CCchHHHHHHHHHhC
Confidence 9988899999998865432 2222 3444455443
No 83
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.80 E-value=3.3e-19 Score=106.06 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=76.4
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~ 78 (115)
..+.|.|+|++|++|+..+ .+.+|||+++.+.. .+++|++.++ +.||.|||.|.|.++. ....|.|+||+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 3578999999999999887 77799999998752 3668888776 9999999999999843 34689999999
Q ss_pred CCCCCCCceeEEEEEEcchhh
Q 048139 79 SHTLTPDEFIGSGRIQLHKAL 99 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~ 99 (115)
.+..+++++||++.+......
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred CCCCCCcceEEEEEECCcccC
Confidence 998889999999999865443
No 84
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.80 E-value=5.5e-18 Score=99.38 Aligned_cols=90 Identities=27% Similarity=0.454 Sum_probs=78.3
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF 87 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~ 87 (115)
..|.|+|.+|+ +......+.+||||.+.+++. .++|+++.+ +.+|.|+|.|.|.+.. ...|.|+|||++..+.+++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcE
Confidence 46899999998 555555788999999999876 899999876 9999999999999864 4689999999998888999
Q ss_pred eEEEEEEcchhhcc
Q 048139 88 IGSGRIQLHKALSQ 101 (115)
Q Consensus 88 lG~~~v~l~~l~~~ 101 (115)
||++.+++.++...
T Consensus 79 iG~~~i~l~~l~~~ 92 (125)
T cd04021 79 LGEASLDLSDILKN 92 (125)
T ss_pred EEEEEEEHHHhHhh
Confidence 99999999999764
No 85
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=2.4e-18 Score=102.46 Aligned_cols=91 Identities=24% Similarity=0.291 Sum_probs=78.1
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC------eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~ 77 (115)
..+.|.|+|++|+||+..+..+.+|||+++.+.. .+++|++.++ +.||.|||+|.|.+.. ....|.|+||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 4588999999999999888888899999998841 2568998876 9999999999999953 4468999999
Q ss_pred eCCCCCCCceeEEEEEEcchh
Q 048139 78 NSHTLTPDEFIGSGRIQLHKA 98 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l 98 (115)
+.+..+++++||++.+++...
T Consensus 92 ~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 92 NKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred ECCCCCCCcEEEEEEECCcCC
Confidence 999888999999999987643
No 86
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.79 E-value=8.3e-18 Score=101.41 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=79.9
Q ss_pred EEEEEeeecC--CCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCC---------CceEEE
Q 048139 11 LEITVVGCYN--LDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG---------LRELNV 74 (115)
Q Consensus 11 l~v~i~~a~~--l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---------~~~L~~ 74 (115)
..++|..|++ ++.....+..|||+++.+. ..+++|+++++ +.||.|||+|.|.+... ...|.+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 4566666666 5566666779999999872 35899999887 99999999999999432 357999
Q ss_pred EEEeCCCC-CCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139 75 VVWNSHTL-TPDEFIGSGRIQLHKALSQGFDDAAWPLQ 111 (115)
Q Consensus 75 ~v~~~~~~-~~~~~lG~~~v~l~~l~~~~~~~~~~~L~ 111 (115)
+|||++.+ .+|++||++.++|..+........+++|+
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~ 120 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM 120 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhh
Confidence 99999865 46999999999999997766666677776
No 87
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=134.73 Aligned_cols=106 Identities=17% Similarity=0.279 Sum_probs=92.8
Q ss_pred cccccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeec--CCCceEEEEEEeC
Q 048139 3 ISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLI--EGLRELNVVVWNS 79 (115)
Q Consensus 3 ~~~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~--~~~~~L~~~v~~~ 79 (115)
.|....|.|.|+|++|++|. +..+.+||||++.+++. +.+|+++++ +.||.|||.|.|.+. +....|+++|||+
T Consensus 1974 ~~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1974 LLQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HHhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 35667899999999999997 55788999999999954 889999987 999999999998874 3446799999999
Q ss_pred CCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
+.+++| .+|++.+++.++..++....||+|..
T Consensus 2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred CccCCC-CCceEEEEHHHHhcCceeeeeeecCc
Confidence 988555 89999999999999999999999984
No 88
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.79 E-value=1.8e-17 Score=98.36 Aligned_cols=100 Identities=21% Similarity=0.357 Sum_probs=80.3
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEEC-------------CeEEEEEEecCCCCCCee-ceeEEEeecCCCceEEEE
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYG-------------SSKYRTKTCTDGGKNPTF-QEKFVLPLIEGLRELNVV 75 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-------------~~~~~t~~~~~~~~~P~w-~e~~~~~~~~~~~~L~~~ 75 (115)
...|++++|++|+ .+..+.+|||+++.+. ...++|+++.+ +.||.| ||.|.|.+.. ...|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~-~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP-TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC-CCEEEEE
Confidence 3578999999998 6778999999999884 13689999887 999999 9999999854 3689999
Q ss_pred EEeCCCCCC---CceeEEEEEEcchhhccCe---eeeEEeccc
Q 048139 76 VWNSHTLTP---DEFIGSGRIQLHKALSQGF---DDAAWPLQT 112 (115)
Q Consensus 76 v~~~~~~~~---~~~lG~~~v~l~~l~~~~~---~~~~~~L~~ 112 (115)
|||+...++ +++||++.+++.++..++. ...++.|..
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k 121 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGR 121 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCc
Confidence 999764433 6899999999999987543 334566653
No 89
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.77 E-value=2.3e-17 Score=95.54 Aligned_cols=97 Identities=26% Similarity=0.294 Sum_probs=75.2
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCCCCc
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLTPDE 86 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~~~~ 86 (115)
|.|+|++|++|+.. +.+||||.+.+.+. .++|++..+ .+|.|||+|.|.+.. ....|.+.+|+.+....+.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence 78999999999866 68899999999864 578888764 899999999999965 3456888889887665566
Q ss_pred eeEEEEEEcchhhccCeeeeEEecccCC
Q 048139 87 FIGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 87 ~lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
++|.+. +..+..++....|++|.+++
T Consensus 77 ~~g~v~--l~~~~~~~~~~~w~~L~~~~ 102 (117)
T cd08383 77 VIGKVA--LSKLDLGQGKDEWFPLTPVD 102 (117)
T ss_pred EEEEEE--ecCcCCCCcceeEEECccCC
Confidence 666655 44444456667888998754
No 90
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.77 E-value=1.8e-17 Score=95.33 Aligned_cols=81 Identities=26% Similarity=0.491 Sum_probs=67.8
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeC------
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNS------ 79 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~------ 79 (115)
|.|+|.+|++|+ +..||||.+.+.. ...+|+++.+ +.||.|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence 679999999995 4589999998852 4689999987 9999999999999964 67999999998
Q ss_pred -CCCCCCceeEEEEEEcchh
Q 048139 80 -HTLTPDEFIGSGRIQLHKA 98 (115)
Q Consensus 80 -~~~~~~~~lG~~~v~l~~l 98 (115)
+..+.|+++|.+.+.|+.-
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred ccccCcccEEEEEEEEECHH
Confidence 3457899998888887643
No 91
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.76 E-value=1.1e-17 Score=98.57 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=74.2
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCC-CCeeceeEEEeecC--CCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGK-NPTFQEKFVLPLIE--GLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~-~P~w~e~~~~~~~~--~~~~L~~~v~~ 78 (115)
..+.|+|.|++|++|+.....+..|||+++.+. ..+++|++.++ +. +|.|||.|.|.+.. ....|.|++||
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 467899999999999976545567899999874 24778888776 64 69999999999954 23467889999
Q ss_pred CCCCCCCceeEEEEEEcchh
Q 048139 79 SHTLTPDEFIGSGRIQLHKA 98 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l 98 (115)
++..+++++||++.+..+..
T Consensus 91 ~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 91 RSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCCcCCceEEEEEECCccC
Confidence 99888999999999998763
No 92
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.75 E-value=7.6e-17 Score=92.54 Aligned_cols=87 Identities=23% Similarity=0.408 Sum_probs=72.9
Q ss_pred EEEeeecCCCCCCCCCCCCcEEEEEECC------eEEEEEEecCCCCCCeeceeEEEeec---C--CCceEEEEEEeCCC
Q 048139 13 ITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQEKFVLPLI---E--GLRELNVVVWNSHT 81 (115)
Q Consensus 13 v~i~~a~~l~~~~~~~~~~p~~~~~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~---~--~~~~L~~~v~~~~~ 81 (115)
+-.++|++|+..+..+.+|||+++.+.. ..++|+++++ +.+|.|+ .|.|... . ....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 3456789999999899999999998753 2589999887 9999999 6887752 1 25789999999998
Q ss_pred CCCCceeEEEEEEcchhhcc
Q 048139 82 LTPDEFIGSGRIQLHKALSQ 101 (115)
Q Consensus 82 ~~~~~~lG~~~v~l~~l~~~ 101 (115)
.+++++||++.+++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 88999999999999999853
No 93
>PLN03008 Phospholipase D delta
Probab=99.74 E-value=4e-17 Score=117.81 Aligned_cols=108 Identities=19% Similarity=0.342 Sum_probs=90.0
Q ss_pred ccCceEEEEEeeecCCCCCCC------------------------------------------CCCCCcEEEEEECCe-E
Q 048139 6 IQGLPLEITVVGCYNLDDKEW------------------------------------------ISRQDPYVCLEYGSS-K 42 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~~------------------------------------------~~~~~p~~~~~~~~~-~ 42 (115)
+..|+|+++|.+|++|++.+. .+.+|||+.+.++.. .
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv 90 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL 90 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce
Confidence 357899999999999874110 234699999999865 5
Q ss_pred EEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 43 YRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 43 ~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
.+|+++.+ +.||.|||+|.|.+......|.|+|||++.++ +++||++.+|+.++..+.....|++|...+|
T Consensus 91 ~RTrVi~n-~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~ 161 (868)
T PLN03008 91 ARTRVLKN-SQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG 161 (868)
T ss_pred eeEEeCCC-CCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC
Confidence 68999877 89999999999999666679999999999886 5899999999999988878888988877653
No 94
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=1.3e-16 Score=91.73 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCceeEEEEEEcchhhcc-
Q 048139 25 EWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQ- 101 (115)
Q Consensus 25 ~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~- 101 (115)
...|.+||||.+.+++. .++|+++.+ +.||.|||.|.|.+.+ ....|.|+|||++.. ++++||.+.++|.++...
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 35678999999999864 678888776 9999999999999854 457799999999987 899999999999999654
Q ss_pred CeeeeEEeccc
Q 048139 102 GFDDAAWPLQT 112 (115)
Q Consensus 102 ~~~~~~~~L~~ 112 (115)
+....||+|.+
T Consensus 86 ~~~~~w~~L~~ 96 (111)
T cd04052 86 SVGQQWFPLSG 96 (111)
T ss_pred hccceeEECCC
Confidence 44567888864
No 95
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.72 E-value=1e-16 Score=87.45 Aligned_cols=81 Identities=33% Similarity=0.605 Sum_probs=71.0
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECC---eEEEEEEecCCCCCCeeceeEEEee-cCCCceEEEEEEeCCCCCCCc
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVVVWNSHTLTPDE 86 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~v~~~~~~~~~~ 86 (115)
|+|+|.+|++|+..+..+..+||+.+.+.. ..++|++..+ +.+|.|++.|.|.+ .+....|.|+||+.+..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 789999999999877778899999999976 6799999887 89999999999997 344556999999999888899
Q ss_pred eeEEEE
Q 048139 87 FIGSGR 92 (115)
Q Consensus 87 ~lG~~~ 92 (115)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999973
No 96
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=8.2e-16 Score=105.83 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=89.3
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeec---CCCceEEEEEEeCC
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLI---EGLRELNVVVWNSH 80 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~---~~~~~L~~~v~~~~ 80 (115)
....|.|+|++|.+|+..+..|..|||+++++. ..+.+|++.++ +.||.|||+|.|.+. -....|.++|||++
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 456799999999999988855678999999986 35889999886 999999999999973 24678999999999
Q ss_pred CCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139 81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
.+++++++|++.++|..+........|.+|...
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~ 276 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPS 276 (421)
T ss_pred CcccccEEEEEEecCccccccccceeeeccccc
Confidence 999999999999998888665555556677653
No 97
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.68 E-value=2.5e-15 Score=83.69 Aligned_cols=99 Identities=32% Similarity=0.598 Sum_probs=83.4
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCcee
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFI 88 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~l 88 (115)
|.|.|++|+++.........+||+.+.+.. ..++|++..+ +.+|.|++.|.|.+.. ....|.+++|+....+.++++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence 468999999998766667789999999987 8889998876 8899999999999965 567899999999877778899
Q ss_pred EEEEEEcchhh-ccCeeeeEEec
Q 048139 89 GSGRIQLHKAL-SQGFDDAAWPL 110 (115)
Q Consensus 89 G~~~v~l~~l~-~~~~~~~~~~L 110 (115)
|++.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999998 55555566554
No 98
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.66 E-value=5.7e-15 Score=82.46 Aligned_cols=92 Identities=29% Similarity=0.502 Sum_probs=78.5
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCe---EEEEEEecCCCCCCeeceeEEEeecCC-CceEEEEEEeCCCCCCC
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSS---KYRTKTCTDGGKNPTFQEKFVLPLIEG-LRELNVVVWNSHTLTPD 85 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~---~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~L~~~v~~~~~~~~~ 85 (115)
.|.|.|..|+++......+..+||+.+.+... ..+|+.+.+ +.+|.|++.|.|.+... ...|.++||+....+.+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~ 79 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRD 79 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcccCEEEEEEEecCCccCC
Confidence 37899999999987766567899999999764 789998876 77999999999999654 78999999999877778
Q ss_pred ceeEEEEEEcchhhccC
Q 048139 86 EFIGSGRIQLHKALSQG 102 (115)
Q Consensus 86 ~~lG~~~v~l~~l~~~~ 102 (115)
.++|.+.+++.++..+.
T Consensus 80 ~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 80 DFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ceeEEEEEEHHHcccCc
Confidence 99999999999886654
No 99
>PLN02223 phosphoinositide phospholipase C
Probab=99.55 E-value=1.5e-13 Score=95.89 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=79.6
Q ss_pred CceEEEEEeeecCCCCC-----CCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEee-cCCCceEEEEE
Q 048139 8 GLPLEITVVGCYNLDDK-----EWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVVV 76 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~-----~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~v 76 (115)
..+|.|+|+.|++++.. .....+|||+++.+.+ ..++|.+.. .+.||.|||+|.|.+ .+...-|.|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~n-Ng~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKN-NEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCC-CCcCceecceeEEEEEccCceEEEEEE
Confidence 35799999999987511 2234579999999853 356776554 499999999999998 45566789999
Q ss_pred EeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 77 WNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 77 ~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
+|++...+++|+|++.+|+..+..+ . .+.+|.+++|
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~G-y--R~VpL~~~~g 522 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIEG-I--RAVPLYDERG 522 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcCC-c--eeEeccCCCc
Confidence 9999778899999999999998763 2 3346666654
No 100
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=1.4e-13 Score=81.03 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=75.6
Q ss_pred EEEEEeeecCCCC--CCCCCC--CCcEEEEEECC---eEEEEEEecCCCCC--CeeceeEEEeecC--------------
Q 048139 11 LEITVVGCYNLDD--KEWISR--QDPYVCLEYGS---SKYRTKTCTDGGKN--PTFQEKFVLPLIE-------------- 67 (115)
Q Consensus 11 l~v~i~~a~~l~~--~~~~~~--~~p~~~~~~~~---~~~~t~~~~~~~~~--P~w~e~~~~~~~~-------------- 67 (115)
|+|.|-+|++++. ....|. .|||++..+.. .+++|.++.+ +.+ |.||+.|.|.+.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 7899999999653 334554 89999999863 5799999887 888 9999999988722
Q ss_pred ----------CCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCe
Q 048139 68 ----------GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF 103 (115)
Q Consensus 68 ----------~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~ 103 (115)
....|.++|||.+.+++|+++|++.+++..+..+..
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 136789999999999999999999999998876543
No 101
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.7e-15 Score=103.72 Aligned_cols=102 Identities=27% Similarity=0.461 Sum_probs=88.6
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCC------
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTL------ 82 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~------ 82 (115)
.+++++|++|++|.-.+..|++|||+...++..+.+|+++-. ..||.|+|.|+|++++....++++|||.++.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~-~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQ-ELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhh-ccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 478899999999998999999999999999999999999886 9999999999999998888999999997642
Q ss_pred -----CCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139 83 -----TPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 83 -----~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
..|+|+|+..+.+..+. |..+.||.|..+
T Consensus 374 qkl~resddflgqtvievrtls--gemdvwynlekr 407 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKR 407 (1283)
T ss_pred HHhhhcccccccceeEEEEecc--cchhhhcchhhc
Confidence 35889999999887764 466788877543
No 102
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.52 E-value=1.8e-13 Score=97.68 Aligned_cols=103 Identities=23% Similarity=0.375 Sum_probs=81.6
Q ss_pred eEEEEEeeecCCCCCCCC----CCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeec-CCCceEEEEEEeC
Q 048139 10 PLEITVVGCYNLDDKEWI----SRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVVVWNS 79 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~----~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~v~~~ 79 (115)
+|.|.|..++++.+.... ...+||+.+.+.+ ...+|+++.+.+.+|.|+|+|.|.+. +...-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 799999999976543322 2368999888753 47899976666999999999999994 5667789999999
Q ss_pred CCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
+..++|+|+|+..+|+..|.. |. ...+|.++.|
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~-Gy--RhVpL~~~~G 729 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQ-GY--RHVPLLSREG 729 (746)
T ss_pred CCCCcccccceeeccHHHhhC-ce--eeeeecCCCC
Confidence 999999999999999999865 33 2346666655
No 103
>PLN02270 phospholipase D alpha
Probab=99.49 E-value=1.2e-12 Score=94.96 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=90.8
Q ss_pred ccCceEEEEEeeecCCCCCC------------------CCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeec
Q 048139 6 IQGLPLEITVVGCYNLDDKE------------------WISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLI 66 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~------------------~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~ 66 (115)
+..|+|+++|.+|++|++.+ ..+.++||+.+.+.+. ..+|+++.+...||.|+|+|++.+.
T Consensus 5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence 67899999999999998521 1134699999999865 6699998764569999999999996
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 67 EGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 67 ~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
.....+.|.|.|.+.++ ..+||.+.+|..++..+.....|++|.+.+|
T Consensus 85 h~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~ 132 (808)
T PLN02270 85 HMASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDK 132 (808)
T ss_pred cCcceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCC
Confidence 66689999999988775 4599999999999999888899998887654
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=99.47 E-value=1.6e-12 Score=92.31 Aligned_cols=104 Identities=23% Similarity=0.245 Sum_probs=81.2
Q ss_pred CceEEEEEeeecCCCCC------CCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeec-CCCceEEEE
Q 048139 8 GLPLEITVVGCYNLDDK------EWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVV 75 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~------~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~ 75 (115)
..+|.|.|+.|++++.. +....+|||+++.+. ..+++|+++.+ +.||.|+|+|.|.+. +...-|.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCCccEEEEE
Confidence 46799999999887531 112235899999875 34778999887 799999999999984 445678999
Q ss_pred EEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 76 VWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 76 v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
|||++..+.++|+|++.+|+..|..+- .+.+|.++.|
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G 584 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKG 584 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCC
Confidence 999988788999999999999997643 3668877665
No 105
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.45 E-value=2.4e-12 Score=91.38 Aligned_cols=104 Identities=22% Similarity=0.255 Sum_probs=80.0
Q ss_pred CceEEEEEeeecCCCCC------CCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-cCCCceEEEE
Q 048139 8 GLPLEITVVGCYNLDDK------EWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVV 75 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~------~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~ 75 (115)
..+|.|+|+.+++++.. +.....|||+++.+. ..+.+|++..+ +.||.|+|+|.|.+ .+...-|+|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEEE
Confidence 46899999999986421 112347999999884 23578887665 89999999999998 4556788999
Q ss_pred EEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 76 VWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 76 v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
|+|++...+++|+|+..+|+..|..+ .. ..+|.++.|
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~G-yR--~V~L~~~~G 583 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQG-IH--AVPLFNRKG 583 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCc-cc--eEeccCCCc
Confidence 99999878899999999999999763 32 346666654
No 106
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.43 E-value=2.1e-12 Score=72.52 Aligned_cols=84 Identities=23% Similarity=0.379 Sum_probs=70.4
Q ss_pred EEEEEeeecCCCCCC---CCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCc
Q 048139 11 LEITVVGCYNLDDKE---WISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDE 86 (115)
Q Consensus 11 l~v~i~~a~~l~~~~---~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~ 86 (115)
|.|+|..|+++...+ +.+.++||+.+.++.. +.+|++ +.||.|||.|.|.+. ...++.+.|||... ...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEec-CCcEEEEEEEeCCC-Ceec
Confidence 578999999998877 5677899999999866 788876 579999999999995 56899999999863 3445
Q ss_pred eeEEEEEEcchhhc
Q 048139 87 FIGSGRIQLHKALS 100 (115)
Q Consensus 87 ~lG~~~v~l~~l~~ 100 (115)
.+|..-+.+++|..
T Consensus 75 Pi~llW~~~sdi~E 88 (109)
T cd08689 75 PVGLLWLRLSDIAE 88 (109)
T ss_pred ceeeehhhHHHHHH
Confidence 78999999998865
No 107
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.43 E-value=5.5e-13 Score=94.54 Aligned_cols=104 Identities=23% Similarity=0.292 Sum_probs=93.1
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF 87 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~ 87 (115)
.-|.|.|.+|+||+..+..|..||||.+.+.. ...+|.++.+ +..|-|+|+|.|.++..-..|.|.|||.+ +++|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcceeeEEEEEeccc-cccccc
Confidence 45899999999999998889999999999985 5789999887 99999999999999888889999999999 999999
Q ss_pred eEEEEEEcchhhccCeeeeEEecccCC
Q 048139 88 IGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 88 lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
||.+.+.-.+|......+.||.|...+
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD 109 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVD 109 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccC
Confidence 999999999998877667788887643
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.42 E-value=1.3e-12 Score=96.77 Aligned_cols=106 Identities=23% Similarity=0.310 Sum_probs=90.4
Q ss_pred ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCC
Q 048139 6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLT 83 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~ 83 (115)
...|-|+|.+..|.+|+..+..+..||||.+.+... .++|+++++ +.||.|||++..++.. ....+.+.|+|++...
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeeccccceEEEEEeecccCC
Confidence 357889999999999999988888999999999865 899999887 9999999999999964 4567899999999888
Q ss_pred CCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 84 PDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 84 ~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
+++.||.+.++|+.+..++.....-+|.+
T Consensus 1116 knd~lg~~~idL~~l~~~~~~n~~i~ldg 1144 (1227)
T COG5038 1116 KNDLLGTAEIDLSKLEPGGTTNSNIPLDG 1144 (1227)
T ss_pred CccccccccccHhhcCcCCccceeeeccC
Confidence 99999999999999877665544445543
No 109
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.5e-12 Score=88.77 Aligned_cols=89 Identities=27% Similarity=0.381 Sum_probs=74.8
Q ss_pred CceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeC
Q 048139 8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNS 79 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~ 79 (115)
.+.|+|.|++|++|+..+..+..||||++.+. ..+++|.+.++ +.||.|||+|.|.++. ....|.|+|||+
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 58999999999999998888889999999874 23666777665 9999999999998853 235789999999
Q ss_pred CCCCCCceeEEEEEEcch
Q 048139 80 HTLTPDEFIGSGRIQLHK 97 (115)
Q Consensus 80 ~~~~~~~~lG~~~v~l~~ 97 (115)
+.++++++||.+.+....
T Consensus 376 d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccccccceeeEEEecCCC
Confidence 999999999998887654
No 110
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.40 E-value=1.1e-11 Score=87.94 Aligned_cols=104 Identities=23% Similarity=0.298 Sum_probs=79.1
Q ss_pred CceEEEEEeeecCCC----CCC--CCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-cCCCceEEEE
Q 048139 8 GLPLEITVVGCYNLD----DKE--WISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVV 75 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~----~~~--~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~ 75 (115)
..+|.|+|+.+++++ ... .....|||+++.+. ..+.+|+++.+ +.+|.|+|+|.|.+ .+...-|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCceeEEEEE
Confidence 357999999998753 111 12346899999885 34678999887 68999999999998 4456778999
Q ss_pred EEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 76 VWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 76 v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
|+|++....++|+|+..+|+..|..+ .. ..+|.++.|
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~G-yR--~V~L~~~~g 566 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQG-IR--AFPLHSRKG 566 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCc-cc--eEEccCCCc
Confidence 99998777899999999999998763 32 336666554
No 111
>PLN02228 Phosphoinositide phospholipase C
Probab=99.35 E-value=3.3e-11 Score=85.28 Aligned_cols=103 Identities=24% Similarity=0.304 Sum_probs=78.4
Q ss_pred ceEEEEEeeecCCCC----CC--CCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCee-ceeEEEeec-CCCceEEEE
Q 048139 9 LPLEITVVGCYNLDD----KE--WISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTF-QEKFVLPLI-EGLRELNVV 75 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~----~~--~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w-~e~~~~~~~-~~~~~L~~~ 75 (115)
.+|.|+|+.|++|+. .. .....|||+.+.+. ..+++|+++.+ +.+|.| +|.|.|.+. +...-|+|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCceeEEEEE
Confidence 479999999988731 11 12337899999874 34678998776 789999 999999984 456678999
Q ss_pred EEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139 76 VWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115 (115)
Q Consensus 76 v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~ 115 (115)
|+|++..+.++|+|++.+|+..|.. |.. ..+|.+..|
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~-GYR--~VpL~~~~G 546 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKS-GVR--AVRLHDRAG 546 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhC-Cee--EEEccCCCC
Confidence 9999877789999999999999965 333 336666554
No 112
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.31 E-value=2.1e-11 Score=90.56 Aligned_cols=100 Identities=18% Similarity=0.310 Sum_probs=85.6
Q ss_pred cccCceEEEEEeeecCCCCCC--CCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCC
Q 048139 5 GIQGLPLEITVVGCYNLDDKE--WISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHT 81 (115)
Q Consensus 5 ~~~~~~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~ 81 (115)
+..-|+|.|+|.+|+++...+ ..+..|||+.+.+.. ...+|++.++ +.||+|||+|...+..-...|.+++||.+.
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeec-cCCccccceEEEEecccCCceeEEEEeccc
Confidence 356789999999999998877 567789999998753 3558898877 999999999999997777899999999888
Q ss_pred CCCCceeEEEEEEcchhhccCeee
Q 048139 82 LTPDEFIGSGRIQLHKALSQGFDD 105 (115)
Q Consensus 82 ~~~~~~lG~~~v~l~~l~~~~~~~ 105 (115)
...|+.+|.+.++|..+...+...
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~ 534 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKK 534 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccc
Confidence 889999999999999987765543
No 113
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.26 E-value=8.9e-11 Score=85.04 Aligned_cols=94 Identities=23% Similarity=0.390 Sum_probs=75.6
Q ss_pred ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeec-eeEEEee-cCCCceEEEEEEe
Q 048139 6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQ-EKFVLPL-IEGLRELNVVVWN 78 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~-e~~~~~~-~~~~~~L~~~v~~ 78 (115)
+.+-+|.|.|+.|++|+.. .-+...||+.+.+. ..+++|.++..++.||+|+ |.|+|++ .+...-|++.|++
T Consensus 1062 l~p~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1062 LLPMTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred ccceEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 4566889999999999844 34456799999874 3455555544459999999 9999999 4566789999999
Q ss_pred CCCCCCCceeEEEEEEcchhhc
Q 048139 79 SHTLTPDEFIGSGRIQLHKALS 100 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~ 100 (115)
.+.++...|||++.+|+..+..
T Consensus 1141 eDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred ccccCCcceeeeeecchhhhhc
Confidence 9988888899999999998865
No 114
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=7.3e-11 Score=84.04 Aligned_cols=110 Identities=22% Similarity=0.240 Sum_probs=90.8
Q ss_pred CccccccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-------eEEEEEEecCCCCCCeeceeEEEeec----CCC
Q 048139 1 MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-------SKYRTKTCTDGGKNPTFQEKFVLPLI----EGL 69 (115)
Q Consensus 1 ~~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-------~~~~t~~~~~~~~~P~w~e~~~~~~~----~~~ 69 (115)
+.++++..++++|.|+.|++|+.. ..|...||+.+.+.+ .++.|+.-.+ +..|.+||+|+|-+. ++.
T Consensus 1117 fthpgtgehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~Pe~ 1194 (1283)
T KOG1011|consen 1117 FTHPGTGEHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGGPEH 1194 (1283)
T ss_pred ecCCCCCcceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCCCce
Confidence 468899999999999999999743 456678999887742 3566776555 889999999999983 345
Q ss_pred ceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 70 RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 70 ~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
-+|.++|.|+.....|+.+|.+.++|.++..+|+...|++|..
T Consensus 1195 YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1195 YELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred EEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 6789999999877778899999999999999999999998854
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.11 E-value=3.2e-10 Score=80.05 Aligned_cols=104 Identities=14% Similarity=0.255 Sum_probs=86.5
Q ss_pred CceEEEEEeeecCCCCCCCCC-CCCcEEEEEECCeEEEEEEecCCCCCCeec-eeEEEeecC---CCceEEEEEEeCCCC
Q 048139 8 GLPLEITVVGCYNLDDKEWIS-RQDPYVCLEYGSSKYRTKTCTDGGKNPTFQ-EKFVLPLIE---GLRELNVVVWNSHTL 82 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~-~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~-e~~~~~~~~---~~~~L~~~v~~~~~~ 82 (115)
+|+|-|.|..|++|+..+..+ ..|.|+.+.+.+..++|.+..+ +.||.|| +.|.|+++. .++.|.+++.|++.-
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhh-hcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 688999999999999887654 3689999999999999999876 9999999 679999953 357899999999988
Q ss_pred CCCceeEEEEEEcchhhccC----------eeeeEEeccc
Q 048139 83 TPDEFIGSGRIQLHKALSQG----------FDDAAWPLQT 112 (115)
Q Consensus 83 ~~~~~lG~~~v~l~~l~~~~----------~~~~~~~L~~ 112 (115)
+.++-||.+.++++++.... ....||++.+
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifd 120 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFD 120 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecce
Confidence 88999999999999885432 2345777654
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.04 E-value=7.8e-11 Score=84.49 Aligned_cols=93 Identities=20% Similarity=0.305 Sum_probs=79.6
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-------eEEEEEEecCCCCCCeeceeEEEeecCC-----CceEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-------SKYRTKTCTDGGKNPTFQEKFVLPLIEG-----LRELNV 74 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-------~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~L~~ 74 (115)
..++|.|-|+.|+++-+.+.+|.+|||+++.+.. ..++|+++.. +.||+|+|.|.|.+++. ..-+.|
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEE
Confidence 3456778889999999999999999999999863 3789999887 99999999999999532 456899
Q ss_pred EEEeCCCCCCCceeEEEEEEcchhhc
Q 048139 75 VVWNSHTLTPDEFIGSGRIQLHKALS 100 (115)
Q Consensus 75 ~v~~~~~~~~~~~lG~~~v~l~~l~~ 100 (115)
+|+|++-...++|-|++.+.|.++..
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EeeccceecccccchHHHHhhCCCCC
Confidence 99999999999999999998887743
No 117
>PLN02352 phospholipase D epsilon
Probab=98.98 E-value=9.5e-09 Score=74.86 Aligned_cols=101 Identities=16% Similarity=0.241 Sum_probs=76.8
Q ss_pred ccCceEEEEEeeecCCCCCC----CCCC-CCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCC-ceEEEEEEe
Q 048139 6 IQGLPLEITVVGCYNLDDKE----WISR-QDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGL-RELNVVVWN 78 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~----~~~~-~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~L~~~v~~ 78 (115)
...|+|+++|.+|.-+.... ..+. .+||+.+.+... ..+| .+ ..||.|+|+|++.+.... ..+.|.|.|
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~-~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SH-EYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CC-CCCCccccceeEEeeeecCCcEEEEEec
Confidence 56799999999997443221 1111 389999999865 4466 44 669999999999995444 689999988
Q ss_pred CCCCCCCceeEEEEEEcchhhccCe-eeeEEecccCCC
Q 048139 79 SHTLTPDEFIGSGRIQLHKALSQGF-DDAAWPLQTKTG 115 (115)
Q Consensus 79 ~~~~~~~~~lG~~~v~l~~l~~~~~-~~~~~~L~~~~~ 115 (115)
. ..+||.+.+|..++..++. .+.|++|.+.+|
T Consensus 83 ~-----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~ 115 (758)
T PLN02352 83 K-----CSILGRFHIQAHQIVTEASFINGFFPLIMENG 115 (758)
T ss_pred C-----CeEEEEEEEEHHHhhCCCcccceEEEcccCCC
Confidence 2 5699999999999998756 788998887654
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.97 E-value=1.2e-09 Score=78.02 Aligned_cols=87 Identities=23% Similarity=0.396 Sum_probs=69.4
Q ss_pred CCCCCcEEEEEECCe----EEEEEEecCCCCCCeeceeEEEeecCC----------------CceEEEEEEeC-CCCCCC
Q 048139 27 ISRQDPYVCLEYGSS----KYRTKTCTDGGKNPTFQEKFVLPLIEG----------------LRELNVVVWNS-HTLTPD 85 (115)
Q Consensus 27 ~~~~~p~~~~~~~~~----~~~t~~~~~~~~~P~w~e~~~~~~~~~----------------~~~L~~~v~~~-~~~~~~ 85 (115)
.+.+|||+.+...+. ..+|++.++ +.+|.|+|.|.|.+..+ ...+++++|+. +....+
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~ 226 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVIND 226 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhh
Confidence 345899999987643 358888776 99999999999998432 35688899994 455568
Q ss_pred ceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139 86 EFIGSGRIQLHKALSQGFDDAAWPLQTKT 114 (115)
Q Consensus 86 ~~lG~~~v~l~~l~~~~~~~~~~~L~~~~ 114 (115)
.|+|++.+++..+........||.|.+++
T Consensus 227 ~FlGevrv~v~~~~~~s~p~~W~~Lqp~~ 255 (800)
T KOG2059|consen 227 VFLGEVRVPVDVLRQKSSPAAWYYLQPRP 255 (800)
T ss_pred hhceeEEeehhhhhhccCccceEEEecCC
Confidence 99999999999998766778899988764
No 119
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.88 E-value=1.2e-09 Score=80.41 Aligned_cols=90 Identities=27% Similarity=0.366 Sum_probs=77.2
Q ss_pred CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeE--EEEEEecCCCCCCeeceeEEEee-cCCCceEEEEEEeCCCCCC
Q 048139 8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSK--YRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVVVWNSHTLTP 84 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~v~~~~~~~~ 84 (115)
...++|++++|.+|.+.+..|.+|||+++.++... -+...+.+ +.||+|++.|.+.. -+....|.++|||++..++
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 34677999999999999999999999999998776 44455666 99999999998887 3456789999999999999
Q ss_pred CceeEEEEEEcchh
Q 048139 85 DEFIGSGRIQLHKA 98 (115)
Q Consensus 85 ~~~lG~~~v~l~~l 98 (115)
|+.+|+..++++.-
T Consensus 691 d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 691 DEKIGETTIDLENR 704 (1105)
T ss_pred cchhhceehhhhhc
Confidence 99999999998764
No 120
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.88 E-value=2.6e-09 Score=80.00 Aligned_cols=105 Identities=29% Similarity=0.227 Sum_probs=85.8
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-c---CCCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-I---EGLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~---~~~~~L~~~v~ 77 (115)
..++|.|-|..|++|+-...-..+||||++++. ..+.+|++.++ +.+|.|||...... + ..+++|.++||
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhheeeeeee
Confidence 468899999999999766555568999999985 24788999887 99999999988773 2 13578999999
Q ss_pred eCCCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~ 112 (115)
.......+.++|.+.++|..+........||.|..
T Consensus 1601 s~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1601 SNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 99888888899999999998876656668888754
No 121
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.74 E-value=9e-10 Score=79.20 Aligned_cols=104 Identities=20% Similarity=0.356 Sum_probs=77.2
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-------------------------------EEEEEEecCCCCCCee
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-------------------------------KYRTKTCTDGGKNPTF 57 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-------------------------------~~~t~~~~~~~~~P~w 57 (115)
-.+.|.+..|.++-.++..|.+|||+.+.+... .+-|.+.+ .+.||.|
T Consensus 114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnPkW 192 (1103)
T KOG1328|consen 114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNPKW 192 (1103)
T ss_pred HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCcch
Confidence 345566778888888888899999998865200 12334444 4999999
Q ss_pred ceeEEEeecC-CCceEEEEEEeCCC---------------------------------CCC---CceeEEEEEEcchhhc
Q 048139 58 QEKFVLPLIE-GLRELNVVVWNSHT---------------------------------LTP---DEFIGSGRIQLHKALS 100 (115)
Q Consensus 58 ~e~~~~~~~~-~~~~L~~~v~~~~~---------------------------------~~~---~~~lG~~~v~l~~l~~ 100 (115)
+|.|.|.+.. ....+++-|||++. .+. |+|+|++.+|+.++..
T Consensus 193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~ 272 (1103)
T KOG1328|consen 193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP 272 (1103)
T ss_pred hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence 9999999954 45689999999653 122 7899999999999976
Q ss_pred cCeeeeEEecccCC
Q 048139 101 QGFDDAAWPLQTKT 114 (115)
Q Consensus 101 ~~~~~~~~~L~~~~ 114 (115)
.| .++||.|.++.
T Consensus 273 ~G-ld~WFkLepRS 285 (1103)
T KOG1328|consen 273 DG-LDQWFKLEPRS 285 (1103)
T ss_pred ch-HHHHhccCccc
Confidence 54 47788887764
No 122
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.53 E-value=9.2e-07 Score=51.61 Aligned_cols=99 Identities=20% Similarity=0.362 Sum_probs=69.6
Q ss_pred EEEEEeeecCCCCC-----------C-CCC-CCCcEEEEEEC----CeEEEEEEecCCCCCCeeceeEEEeec-----C-
Q 048139 11 LEITVVGCYNLDDK-----------E-WIS-RQDPYVCLEYG----SSKYRTKTCTDGGKNPTFQEKFVLPLI-----E- 67 (115)
Q Consensus 11 l~v~i~~a~~l~~~-----------~-~~~-~~~p~~~~~~~----~~~~~t~~~~~~~~~P~w~e~~~~~~~-----~- 67 (115)
|.|.|.+|.+|+-. + ..+ ..++|+.+.+. ....+|+++.+ +.-|.|+.++.|.++ +
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 35677777777521 1 111 25789999853 56788998887 999999999988862 1
Q ss_pred C----------CceEEEEEEeCCCC----------CCCceeEEEEEEcchhhccCe-eeeEEec
Q 048139 68 G----------LRELNVVVWNSHTL----------TPDEFIGSGRIQLHKALSQGF-DDAAWPL 110 (115)
Q Consensus 68 ~----------~~~L~~~v~~~~~~----------~~~~~lG~~~v~l~~l~~~~~-~~~~~~L 110 (115)
+ ..++.++||..... .+|-+||.+.+|+.+|+.... ...||++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 25788999986432 234488999999999988654 4567764
No 123
>PLN02964 phosphatidylserine decarboxylase
Probab=98.41 E-value=8e-07 Score=64.39 Aligned_cols=88 Identities=20% Similarity=0.388 Sum_probs=70.2
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCc-EEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCC
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDP-YVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTP 84 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p-~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~ 84 (115)
-.|.+.++++.|+ + ...|+ |+.++++.+.++|...++ +.+|+||+...|.+.+ +..-.++.|||.+.+++
T Consensus 52 ~~~~~~~~~~~~~-~------~~~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 123 (644)
T PLN02964 52 FSGIALLTLVGAE-M------KFKDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK 123 (644)
T ss_pred ccCeEEEEeehhh-h------ccCCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence 3577888888874 2 12467 567778899999999887 9999999999999844 33346899999999999
Q ss_pred CceeEEEEEEcchhhccC
Q 048139 85 DEFIGSGRIQLHKALSQG 102 (115)
Q Consensus 85 ~~~lG~~~v~l~~l~~~~ 102 (115)
++++|.+.+++.++..++
T Consensus 124 n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQE 141 (644)
T ss_pred HHhhhheeecHhhccHHH
Confidence 999999999888776654
No 124
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=7.6e-07 Score=59.18 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=70.7
Q ss_pred ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEE
Q 048139 6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVW 77 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~ 77 (115)
....-+.|+++++..|.-.+..+-+|||+...+. ..+++|.+.++ +.+|.|+++|.+.+.++ ...+.|.+|
T Consensus 230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdLa~~kv~lsvg 308 (362)
T KOG1013|consen 230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDLAYKKVALSVG 308 (362)
T ss_pred cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccchhcceEEEeec
Confidence 4556788999999999988889999999999875 23677777666 99999999999999654 357889999
Q ss_pred eCCCCCCCceeEEEEE
Q 048139 78 NSHTLTPDEFIGSGRI 93 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v 93 (115)
|++..+..+++|-...
T Consensus 309 d~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSML 324 (362)
T ss_pred ccCCCcCccCCCcccc
Confidence 9987767788877544
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=1.4e-07 Score=62.50 Aligned_cols=93 Identities=28% Similarity=0.290 Sum_probs=74.2
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEee----cCCCceEEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNVVVW 77 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~~v~ 77 (115)
....+.+++.+|.+|++.+..+..|||+++.+.. .+.+|++..+ +.||.|+|...... ......+.+.+.
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vc 169 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVC 169 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeec
Confidence 3456889999999999999999999999998752 3567777766 99999999877664 123467788888
Q ss_pred eCCCCCCCceeEEEEEEcchhhc
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALS 100 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~ 100 (115)
|.+.+...+++|+..+++..+..
T Consensus 170 dn~~~~~~~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 170 DNDKKTHNESQGQSRVSLKKLKP 192 (362)
T ss_pred cCcccccccCcccchhhhhccCh
Confidence 98888888999999988776643
No 126
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.16 E-value=1.2e-05 Score=56.77 Aligned_cols=83 Identities=24% Similarity=0.435 Sum_probs=66.5
Q ss_pred eeecCCCCCCCCCCCCcEEEEEEC------CeEEEEEEecCCCCCCeeceeEEEee-----cCCCceEEEEEEeCCCCCC
Q 048139 16 VGCYNLDDKEWISRQDPYVCLEYG------SSKYRTKTCTDGGKNPTFQEKFVLPL-----IEGLRELNVVVWNSHTLTP 84 (115)
Q Consensus 16 ~~a~~l~~~~~~~~~~p~~~~~~~------~~~~~t~~~~~~~~~P~w~e~~~~~~-----~~~~~~L~~~v~~~~~~~~ 84 (115)
.+|.+|.+++.+++.+||..+.-. ...++|.+.++ +.+|.|.+ |.... .+....+.+.+||++..++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 567888888999999999777542 23678888887 99999976 55453 2346788999999998889
Q ss_pred CceeEEEEEEcchhhc
Q 048139 85 DEFIGSGRIQLHKALS 100 (115)
Q Consensus 85 ~~~lG~~~v~l~~l~~ 100 (115)
++++|++..++..+..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999988865
No 127
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.13 E-value=2e-06 Score=58.85 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=78.2
Q ss_pred ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC--C----------
Q 048139 6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE--G---------- 68 (115)
Q Consensus 6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~---------- 68 (115)
.....|++.|+++++++........|.|+.+.+- ..+.+|.++++ +.+|.|+|.|-+.+.. +
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 3455677888888777644332234567777653 34677888887 9999999999999843 1
Q ss_pred CceEEEEEEeCCCC-CCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139 69 LRELNVVVWNSHTL-TPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113 (115)
Q Consensus 69 ~~~L~~~v~~~~~~-~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~ 113 (115)
..-++|+||.+..+ ..|.++|.+.+.+..|...-..+..++|++.
T Consensus 443 r~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG 488 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG 488 (523)
T ss_pred hcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence 24689999998755 4588999999999988776666777777653
No 128
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=4e-06 Score=56.69 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=82.7
Q ss_pred cCceEEEEEeeecCCCCCCCC-CCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEe-C
Q 048139 7 QGLPLEITVVGCYNLDDKEWI-SRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWN-S 79 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~-~ 79 (115)
..|.++|-|++|++|...... ..+.||+++++.. .+.+|+...+ +.+|-+.....|.-.+...-|.+.+|. +
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCCccEEEEEEeccc
Confidence 467899999999999765432 3578999998852 3677888776 888888787888877777889999987 4
Q ss_pred CCCCCCceeEEEEEEcchhhccC-eeeeEEecccC
Q 048139 80 HTLTPDEFIGSGRIQLHKALSQG-FDDAAWPLQTK 113 (115)
Q Consensus 80 ~~~~~~~~lG~~~v~l~~l~~~~-~~~~~~~L~~~ 113 (115)
..+.++.|+|.+++-+.+|-... ....||+|.+.
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 55666789999999999996655 66788888653
No 129
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.04 E-value=0.00012 Score=49.66 Aligned_cols=99 Identities=12% Similarity=0.179 Sum_probs=77.0
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeec--------CCCceEEEEEEeCC-C
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLI--------EGLRELNVVVWNSH-T 81 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~--------~~~~~L~~~v~~~~-~ 81 (115)
+.|.|++|++.+.. .+....+...+.+....|..+.. +..|.|+....++++ .....+++++|..+ .
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 57889999988744 23345778888999999998776 889999999999973 23578999999987 5
Q ss_pred CCCCceeEEEEEEcchh---hcc--CeeeeEEecccC
Q 048139 82 LTPDEFIGSGRIQLHKA---LSQ--GFDDAAWPLQTK 113 (115)
Q Consensus 82 ~~~~~~lG~~~v~l~~l---~~~--~~~~~~~~L~~~ 113 (115)
.+..+.+|.+.++|... ..+ .....||+|++-
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 56678999999999988 443 345578888775
No 130
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.84 E-value=3.7e-05 Score=57.22 Aligned_cols=88 Identities=25% Similarity=0.467 Sum_probs=68.5
Q ss_pred cccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-------eEEEEEEecCCCCCCeecee-EEEee--cCCCceEEE
Q 048139 5 GIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-------SKYRTKTCTDGGKNPTFQEK-FVLPL--IEGLRELNV 74 (115)
Q Consensus 5 ~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-------~~~~t~~~~~~~~~P~w~e~-~~~~~--~~~~~~L~~ 74 (115)
++-.+++.|+|+++.-|.+. +...||.+.+.+ ..++|++..+.+.||.|+|+ |.|.- -+....|.|
T Consensus 699 gvIA~t~sV~VISgqFLSdr----kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSDR----KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred ceEEeeEEEEEEeeeecccc----ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence 44567899999999888654 345798887742 46788887777999999965 77773 567788999
Q ss_pred EEEeCCCCCCCceeEEEEEEcchhhc
Q 048139 75 VVWNSHTLTPDEFIGSGRIQLHKALS 100 (115)
Q Consensus 75 ~v~~~~~~~~~~~lG~~~v~l~~l~~ 100 (115)
.||+.+ ..++|+-.+|+..+..
T Consensus 775 avyeEg----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 775 AVYEEG----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred eeeccC----CceeeeeccchhcccC
Confidence 999876 4699999999988754
No 131
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.80 E-value=7.8e-06 Score=61.09 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=68.5
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEee---c-------CCCceEEEEEEeCC
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL---I-------EGLRELNVVVWNSH 80 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~---~-------~~~~~L~~~v~~~~ 80 (115)
+++.|.+|+.|.-.+..+.+|||+.+.+.++.+.|-++.+ +.+|+|+.+..|.- . .....+.+++||.+
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 4455567777777777778999999999999999999886 99999999988873 1 12356789999999
Q ss_pred CCCCCceeEEEEEEcchh
Q 048139 81 TLTPDEFIGSGRIQLHKA 98 (115)
Q Consensus 81 ~~~~~~~lG~~~v~l~~l 98 (115)
..+.++|+|.......-.
T Consensus 287 r~g~~ef~gr~~~~p~V~ 304 (1105)
T KOG1326|consen 287 RSGINEFKGRKKQRPYVM 304 (1105)
T ss_pred hhchHHhhcccccceEEE
Confidence 888999999976654433
No 132
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.76 E-value=9.3e-05 Score=40.56 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=58.2
Q ss_pred EEEeeecCCCCCCCCCC-CCcEEEEEE--CC-eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCCCC
Q 048139 13 ITVVGCYNLDDKEWISR-QDPYVCLEY--GS-SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLTPD 85 (115)
Q Consensus 13 v~i~~a~~l~~~~~~~~-~~p~~~~~~--~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~~~ 85 (115)
++++.++++......+. +..|++--+ .. ...+|...+ +..||.|.|+|.|.+.- ..-.|-++|+. ...+.
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 67888888865443332 334554433 22 345666544 59999999999999832 34567888887 45678
Q ss_pred ceeEEEEEEcchhhc
Q 048139 86 EFIGSGRIQLHKALS 100 (115)
Q Consensus 86 ~~lG~~~v~l~~l~~ 100 (115)
+.+|.+.+.++.+-.
T Consensus 80 e~iG~~sL~l~s~ge 94 (103)
T cd08684 80 RTIGECSLSLRTLST 94 (103)
T ss_pred ceeeEEEeecccCCH
Confidence 899999999888644
No 133
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.45 E-value=0.0026 Score=39.37 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=59.6
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEecCCCCCCeeceeEEEee----cCCCceEEEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNVVV 76 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~~v 76 (115)
-...+.|+|..+.++.- .....+.|+.+.+ ++. ...|+.... ...+.|+|.+.|.+ -+....|.|.|
T Consensus 6 ~~~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 6 IEEKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred cCCCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEE
Confidence 34678999999988864 1122345665543 333 334444332 46799999999987 24567899999
Q ss_pred EeCCCCC----------------CCceeEEEEEEcchhh
Q 048139 77 WNSHTLT----------------PDEFIGSGRIQLHKAL 99 (115)
Q Consensus 77 ~~~~~~~----------------~~~~lG~~~v~l~~l~ 99 (115)
|+..... .+..+|.+.++|-+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 9865321 2468999999987753
No 134
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.31 E-value=0.0059 Score=37.29 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=58.3
Q ss_pred CceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEecCCCCCCeeceeEEEeec----CCCceEEEEEE
Q 048139 8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCTDGGKNPTFQEKFVLPLI----EGLRELNVVVW 77 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~~----~~~~~L~~~v~ 77 (115)
...+.|.|+.+.++.-.. ..+.|+.+.+ ++. ...|+... ..++.|||.+.|.+. +....|.|+||
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEE
Confidence 467899999998886432 3466776654 333 22343332 357999999999872 45678999999
Q ss_pred eCCCCC----CCceeEEEEEEcchh
Q 048139 78 NSHTLT----PDEFIGSGRIQLHKA 98 (115)
Q Consensus 78 ~~~~~~----~~~~lG~~~v~l~~l 98 (115)
+..... ....+|.+.++|-+.
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEECC
Confidence 865321 224699999998774
No 135
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.21 E-value=0.003 Score=38.58 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=48.9
Q ss_pred CCCcEEEEEEC--Ce----EEEEEEecCCCCCCeeceeEEEeec----CCCceEEEEEEeCCCCCCCceeEEEEEEcchh
Q 048139 29 RQDPYVCLEYG--SS----KYRTKTCTDGGKNPTFQEKFVLPLI----EGLRELNVVVWNSHTLTPDEFIGSGRIQLHKA 98 (115)
Q Consensus 29 ~~~p~~~~~~~--~~----~~~t~~~~~~~~~P~w~e~~~~~~~----~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l 98 (115)
..+.|+.+.+. +. ...|....- +..+.|||.+.|++. +....|.|+||+....++...+|.++++|-+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 35667766553 33 234444333 567889999999972 45678999999987555677999999998875
No 136
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.19 E-value=0.0067 Score=36.79 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=56.8
Q ss_pred ceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEecCCCCCCeeceeEEEee----cCCCceEEEEEEe
Q 048139 9 LPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNVVVWN 78 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~~v~~ 78 (115)
..++|.+....++.... ....+.|+.+.+ ++. ...|..... +.++.|||.+.|.+ -+....|.+++|+
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 46778888777665411 112345555544 332 223333322 36899999999986 2456789999999
Q ss_pred CCCCC--CCceeEEEEEEcchh
Q 048139 79 SHTLT--PDEFIGSGRIQLHKA 98 (115)
Q Consensus 79 ~~~~~--~~~~lG~~~v~l~~l 98 (115)
..... .+..+|.+.++|-+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 76443 467999999998875
No 137
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.10 E-value=0.021 Score=33.91 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=63.9
Q ss_pred eEEEEEeeecCCCCCCCCCCCCcEEEEEECCe---EEEEEEecCCCCCCeeceeEEEee----cC-----CCceEEEEEE
Q 048139 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSS---KYRTKTCTDGGKNPTFQEKFVLPL----IE-----GLRELNVVVW 77 (115)
Q Consensus 10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~---~~~t~~~~~~~~~P~w~e~~~~~~----~~-----~~~~L~~~v~ 77 (115)
.+.+.|....+++. .....++....+.. ...|.......-.-.|++.|.+.+ .. ....+.|.|+
T Consensus 8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 46778888877764 22334666665544 345554443355688999998886 11 2346888888
Q ss_pred eCCCCCCCceeEEEEEEcchhhcc--CeeeeEEeccc
Q 048139 78 NSHTLTPDEFIGSGRIQLHKALSQ--GFDDAAWPLQT 112 (115)
Q Consensus 78 ~~~~~~~~~~lG~~~v~l~~l~~~--~~~~~~~~L~~ 112 (115)
.....++...+|.+.+.|.++... ......++|..
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~ 120 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK 120 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc
Confidence 874333336899999999999885 34445566654
No 138
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.92 E-value=0.01 Score=36.65 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=60.8
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEec---CCCCCCeeceeEEEee----cCCCceEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCT---DGGKNPTFQEKFVLPL----IEGLRELN 73 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~---~~~~~P~w~e~~~~~~----~~~~~~L~ 73 (115)
-...+.|+|..+.+++..-.....+-|+.+.+ +.+ ...|+... .-...+.|||.+.|.+ -+....|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 34678899999988876543334566776654 333 22333211 1122567999999987 24567899
Q ss_pred EEEEeCCCCC---------CCceeEEEEEEcchh
Q 048139 74 VVVWNSHTLT---------PDEFIGSGRIQLHKA 98 (115)
Q Consensus 74 ~~v~~~~~~~---------~~~~lG~~~v~l~~l 98 (115)
|.+|+..... .+..+|.+.++|-+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999865443 356899999998875
No 139
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.86 E-value=0.03 Score=34.09 Aligned_cols=94 Identities=19% Similarity=0.310 Sum_probs=61.0
Q ss_pred ceEEEEEeeecCCCCC-C-CCCCCCc--EEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCC--------------Cc
Q 048139 9 LPLEITVVGCYNLDDK-E-WISRQDP--YVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEG--------------LR 70 (115)
Q Consensus 9 ~~l~v~i~~a~~l~~~-~-~~~~~~p--~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------------~~ 70 (115)
.-|++.|..++-.-+. . ..+..+. .+-+.+.+++++|+.+.. +.+|.|+|.|.|++... ..
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 4577788776433221 1 0033333 344456799999999886 99999999999998322 24
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEcchhhccCe
Q 048139 71 ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF 103 (115)
Q Consensus 71 ~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~ 103 (115)
.+++-+...+..+...++|...+.=..++..+.
T Consensus 88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~ 120 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN 120 (156)
T ss_pred ceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence 677777666655555788887776665555444
No 140
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=96.76 E-value=0.015 Score=32.15 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=47.7
Q ss_pred CCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhhc
Q 048139 29 RQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALS 100 (115)
Q Consensus 29 ~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~ 100 (115)
..+..+.+.+.+. ...|.- +. ..+..|++.|.++++. .++|+|+||-.+- ..+.|...+.|.+...
T Consensus 8 ~~eV~avLklDn~~VgqT~W-k~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~~ 74 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQW-KP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDERH 74 (98)
T ss_pred ccceEEEEEEcCeEEeeccc-cc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhcc
Confidence 3566777877764 445554 22 5688999999999964 4799999988762 4577888888888543
No 141
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.48 E-value=0.036 Score=33.08 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=39.2
Q ss_pred EEEEecCCC-CCCeeceeEEEee----cCCCceEEEEEEeCCCCCCC----ceeEEEEEEcchh
Q 048139 44 RTKTCTDGG-KNPTFQEKFVLPL----IEGLRELNVVVWNSHTLTPD----EFIGSGRIQLHKA 98 (115)
Q Consensus 44 ~t~~~~~~~-~~P~w~e~~~~~~----~~~~~~L~~~v~~~~~~~~~----~~lG~~~v~l~~l 98 (115)
.|+.... + ..+.|+|.+.|.+ -+....|.|+||........ ..||.+.+++-+.
T Consensus 23 ~T~~~~~-~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPF-SFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EES-S-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred ecccccc-ccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 5555443 4 6999999999997 24667899999997654444 6999999998887
No 142
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.41 E-value=0.066 Score=33.39 Aligned_cols=89 Identities=9% Similarity=0.044 Sum_probs=53.9
Q ss_pred CceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe---EEEEEEecCCCCCCeeceeEEEeec----CCCceEEEEEEe
Q 048139 8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS---KYRTKTCTDGGKNPTFQEKFVLPLI----EGLRELNVVVWN 78 (115)
Q Consensus 8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~---~~~t~~~~~~~~~P~w~e~~~~~~~----~~~~~L~~~v~~ 78 (115)
...++|+|..+.. +..........|+.+.+ +.. ..+|....- +.++.|||.+.|.+. +....|.|+||+
T Consensus 9 ~~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 9 DRKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEE
Confidence 4578888888753 32221222234555433 322 224444443 567999999999972 456789999998
Q ss_pred CCCCC----------------CCceeEEEEEEcchh
Q 048139 79 SHTLT----------------PDEFIGSGRIQLHKA 98 (115)
Q Consensus 79 ~~~~~----------------~~~~lG~~~v~l~~l 98 (115)
..... .+..||-+.+.|-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 53211 245778888888764
No 143
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.87 E-value=0.23 Score=31.30 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=39.5
Q ss_pred EEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCC-C-CceeEEEEEEcch
Q 048139 42 KYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLT-P-DEFIGSGRIQLHK 97 (115)
Q Consensus 42 ~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~-~-~~~lG~~~v~l~~ 97 (115)
.++|-+... ..+|.|+|++.+.++. ....|.|+++...... + ....|.+.+||.+
T Consensus 54 e~~S~V~yH-~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYH-NNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEc-CCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 567777766 7899999999999853 3456888777643221 1 2578999999854
No 144
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.63 E-value=0.17 Score=31.53 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=32.5
Q ss_pred EEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCC-CC--ceeEEEEEEcch
Q 048139 42 KYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLT-PD--EFIGSGRIQLHK 97 (115)
Q Consensus 42 ~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~-~~--~~lG~~~v~l~~ 97 (115)
.+.|.+... ..+|.|+|+|.+.++. ....|.|++++...-. ++ ..+|.+.+||.+
T Consensus 60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEec-CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 455555555 7899999999999853 3457889998865322 12 689999999988
No 145
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=95.12 E-value=0.21 Score=28.57 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=39.1
Q ss_pred EEEEEEC-CeEEEEEEecCCCCCCeeceeEEEeecCC--------CceEEEEEEeCCCCCCCceeEEEEEEcchhhccCe
Q 048139 33 YVCLEYG-SSKYRTKTCTDGGKNPTFQEKFVLPLIEG--------LRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF 103 (115)
Q Consensus 33 ~~~~~~~-~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~ 103 (115)
||.+.+. -+.+.|.++. +.+|.++-+..+.+... ...+.++++..- ....+.+|.+++++.++.....
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCC
Confidence 4444443 4567777765 78999998888887432 368899999866 3357799999999999986432
Q ss_pred --eeeEEecccC
Q 048139 104 --DDAAWPLQTK 113 (115)
Q Consensus 104 --~~~~~~L~~~ 113 (115)
....-.|.+.
T Consensus 79 ~~i~~~~~l~g~ 90 (107)
T PF11618_consen 79 ERIHGSATLVGV 90 (107)
T ss_dssp --EEEEEEE-BS
T ss_pred ceEEEEEEEecc
Confidence 3344455444
No 146
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=95.06 E-value=0.44 Score=29.39 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=48.7
Q ss_pred CCcEEEEEECCe-EEEEEEecC-CCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhh
Q 048139 30 QDPYVCLEYGSS-KYRTKTCTD-GGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKAL 99 (115)
Q Consensus 30 ~~p~~~~~~~~~-~~~t~~~~~-~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~ 99 (115)
..-|+++.+.++ ..+|+...- ....-.|++.|.+.+..-.+.|.++||.... ..+.+|+++.+|+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 456888888765 444444221 1334557888888886666899999999876 57889999999976543
No 147
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.66 E-value=0.65 Score=29.45 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=39.0
Q ss_pred EEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCC----CCCceeEEEEEEcc
Q 048139 42 KYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTL----TPDEFIGSGRIQLH 96 (115)
Q Consensus 42 ~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~----~~~~~lG~~~v~l~ 96 (115)
.++|-+... ..+|.|+|++.+.++. ....|.++++..... ..+...|.+.+||-
T Consensus 54 e~~S~V~Yh-~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQ-VDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEee-cCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 667777555 7799999999999853 356788888774321 12357899999986
No 148
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.64 E-value=0.4 Score=26.89 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=41.3
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEecCCCCCCeeceeEEEeec----CCCceEEEEEEeCC
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCTDGGKNPTFQEKFVLPLI----EGLRELNVVVWNSH 80 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~~----~~~~~L~~~v~~~~ 80 (115)
+.+.+....+..........+.|+.+.+ ++. ...|....- ...+.|||.+.|.+. +....|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5556666555543322222366776654 333 234443332 556899999999872 45678999999864
No 149
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.45 E-value=0.22 Score=33.93 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=54.1
Q ss_pred cCceEEEEEeeecCCCCCCC-CC-CCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCC
Q 048139 7 QGLPLEITVVGCYNLDDKEW-IS-RQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLT 83 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~-~~-~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~ 83 (115)
..|.|.+.+..+++|+-... .| ..+-||++....+ +-+|.+... ...-.|.|.|...+-+ .+.+.+-||.+..-.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~-~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSS-GPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccC-CCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 34788899999999975433 22 2467888877643 556665433 5556788999888753 257888888887666
Q ss_pred CCcee
Q 048139 84 PDEFI 88 (115)
Q Consensus 84 ~~~~l 88 (115)
++++.
T Consensus 127 RHKLC 131 (442)
T KOG1452|consen 127 RHKLC 131 (442)
T ss_pred hcccc
Confidence 66653
No 150
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.25 E-value=0.15 Score=36.84 Aligned_cols=61 Identities=26% Similarity=0.425 Sum_probs=47.3
Q ss_pred EEEEEEecCCCCCCeeceeEEEee-cCCCceEEEEEEeCCC----CCCCceeEEEEEEcchhhccCe
Q 048139 42 KYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVVVWNSHT----LTPDEFIGSGRIQLHKALSQGF 103 (115)
Q Consensus 42 ~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~v~~~~~----~~~~~~lG~~~v~l~~l~~~~~ 103 (115)
..+|.++.+ ..+|.|.+.|.+.. .+..+.|++++++.+. ....+|+|++...+.++.....
T Consensus 42 ~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~ 107 (529)
T KOG1327|consen 42 VGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG 107 (529)
T ss_pred ccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh
Confidence 347777876 89999999888776 4566789999998653 3457799999999998876543
No 151
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=93.98 E-value=0.63 Score=28.90 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=38.4
Q ss_pred EEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCC-----CCCceeEEEEEEcch
Q 048139 44 RTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTL-----TPDEFIGSGRIQLHK 97 (115)
Q Consensus 44 ~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~-----~~~~~lG~~~v~l~~ 97 (115)
.+.++.. ..+|.|++++.+.++. ....|.|++++...- .....+|.+.+||.+
T Consensus 55 ~~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3344444 4799999999999843 356788999885522 335689999999876
No 152
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=92.68 E-value=1.3 Score=27.79 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=39.3
Q ss_pred eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCC------CCceeEEEEEEcch
Q 048139 41 SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLT------PDEFIGSGRIQLHK 97 (115)
Q Consensus 41 ~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~------~~~~lG~~~v~l~~ 97 (115)
....|.+... +.+|.|.+++.+.++. ..-.|.|++++...-. ....+|.+.+||-+
T Consensus 54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYH-NKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEe-CCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 3556666665 7899999999999843 3457888888743211 13578999999764
No 153
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=92.28 E-value=1.8 Score=27.26 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=40.4
Q ss_pred eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCC---------CCCceeEEEEEEcch
Q 048139 41 SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTL---------TPDEFIGSGRIQLHK 97 (115)
Q Consensus 41 ~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~---------~~~~~lG~~~v~l~~ 97 (115)
....|.+... +.+|.|.|++.+.++. ..-.|.|++++.... .....+|.+.+||..
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 3566677666 7899999999998843 345788998885421 123578999999876
No 154
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.60 E-value=0.18 Score=37.44 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=40.7
Q ss_pred CCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchh
Q 048139 30 QDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKA 98 (115)
Q Consensus 30 ~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l 98 (115)
.+||+.+.+..........+..+..|.|+++|+..+..+ ..+.+.++.......+.+..++.+..+++
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~~~a~~~~~~e~~ 95 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKALSEAQLSLQEESQ 95 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhhHHHhHHHHHHHH
Confidence 467877776533222222234488999999999997543 56777787765444444334444433333
No 155
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=75.67 E-value=4.1 Score=31.66 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=58.3
Q ss_pred CcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEe
Q 048139 31 DPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWP 109 (115)
Q Consensus 31 ~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~ 109 (115)
++|+.+.+... -.+|....+.-.+|.|.+.|..........+.+.+-+.+..+-..++|.+..+...+.++.....+++
T Consensus 139 e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~ 218 (887)
T KOG1329|consen 139 ENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFP 218 (887)
T ss_pred cchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceee
Confidence 56666666533 23344444423689999988776655566788888777765546789999999999988777777886
Q ss_pred cccCC
Q 048139 110 LQTKT 114 (115)
Q Consensus 110 L~~~~ 114 (115)
++.-+
T Consensus 219 Il~~d 223 (887)
T KOG1329|consen 219 ILDND 223 (887)
T ss_pred eeccC
Confidence 65543
No 156
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.84 E-value=3.2 Score=31.30 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=34.4
Q ss_pred CeeceeEEEeec----CCCceEEEEEEeCCCCCCCceeEEEEEEcch
Q 048139 55 PTFQEKFVLPLI----EGLRELNVVVWNSHTLTPDEFIGSGRIQLHK 97 (115)
Q Consensus 55 P~w~e~~~~~~~----~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~ 97 (115)
-.|||.+.+.+. .....|.+++|+.+..+...++|..++.+..
T Consensus 77 ~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 349999998872 2457899999998877788899999887654
No 157
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=74.08 E-value=18 Score=22.27 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=48.3
Q ss_pred EEeeecCCCCCCCCCCCCcEEEEEEC----------Ce-EEEEEEecCC----CCCCeeceeEEEee--cC--CCceEEE
Q 048139 14 TVVGCYNLDDKEWISRQDPYVCLEYG----------SS-KYRTKTCTDG----GKNPTFQEKFVLPL--IE--GLRELNV 74 (115)
Q Consensus 14 ~i~~a~~l~~~~~~~~~~p~~~~~~~----------~~-~~~t~~~~~~----~~~P~w~e~~~~~~--~~--~~~~L~~ 74 (115)
.|..|.+.. ..+.||+..+. .. ...|.+.... ...-.|+.-|.+.+ .. +-..|.+
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 466776442 34568887763 12 3444443221 23466887776665 21 2368999
Q ss_pred EEEeCCCCCCCceeEEEEEEc
Q 048139 75 VVWNSHTLTPDEFIGSGRIQL 95 (115)
Q Consensus 75 ~v~~~~~~~~~~~lG~~~v~l 95 (115)
+||..+..+++.+.|...+.+
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEe
Confidence 999999999999998876655
No 158
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=67.68 E-value=25 Score=21.25 Aligned_cols=73 Identities=14% Similarity=0.031 Sum_probs=51.3
Q ss_pred CCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEee------cC-------CCceEEEEEEeCCCCCCCceeEEEEE
Q 048139 27 ISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL------IE-------GLRELNVVVWNSHTLTPDEFIGSGRI 93 (115)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~------~~-------~~~~L~~~v~~~~~~~~~~~lG~~~v 93 (115)
..+.+.|..+.+.++-++|+.... -.--.++|.|.|+- ++ ....+.+++++..... ++.|+...-
T Consensus 17 ~~~~~vyL~v~~lg~~~~T~~~pp-vFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~ 94 (140)
T PF14909_consen 17 CDKGDVYLSVCILGQYKRTRCLPP-VFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEE 94 (140)
T ss_pred CCCCCEEEEEEEcccEeecccCCC-cCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEec
Confidence 346788999999999999987653 33444789998884 11 2467888998866443 667888777
Q ss_pred Ecchhhcc
Q 048139 94 QLHKALSQ 101 (115)
Q Consensus 94 ~l~~l~~~ 101 (115)
...+++-.
T Consensus 95 n~rDfLfP 102 (140)
T PF14909_consen 95 NTRDFLFP 102 (140)
T ss_pred cccceEcC
Confidence 77776553
No 159
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=59.05 E-value=28 Score=27.60 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=38.9
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE----CCe----EEEEEEecCCCCCCeeceeEEEee----cCCCceEEE
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY----GSS----KYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNV 74 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~----~~~----~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~ 74 (115)
....++|.++.+.+..-. -..+-++.+.. +.. ...|.... ++.+|.||+...|.+ -+....|.+
T Consensus 341 ~~~~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~-~~~~~~Wn~~leFDI~i~DLPr~ArLc~ 416 (1076)
T KOG0904|consen 341 LDRPFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVP-GCSFPLWNEWLEFDIYIKDLPRMARLCL 416 (1076)
T ss_pred CCCceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCC-CccchhccceeEeeeecCCCChhhhhee
Confidence 345677888776554211 12344444443 222 23333333 377899999998887 234566777
Q ss_pred EEEe
Q 048139 75 VVWN 78 (115)
Q Consensus 75 ~v~~ 78 (115)
.||.
T Consensus 417 ~i~~ 420 (1076)
T KOG0904|consen 417 AIYA 420 (1076)
T ss_pred eeeE
Confidence 7765
No 160
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=56.56 E-value=5.3 Score=31.29 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=41.4
Q ss_pred cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEe
Q 048139 7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWN 78 (115)
Q Consensus 7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~ 78 (115)
.-|.+++.+..|..+. ...+.||..... ..+..|+++.+ +..|.|+++++.++... +.+.+..++
T Consensus 757 ~ygflh~~vhsat~lk-----qs~~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~s-qS~r~~~~e 826 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLK-----QSRNLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIES-QSSRLEKTE 826 (1112)
T ss_pred cccceeeeeccccccc-----cccceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhhc-cccchhhhc
Confidence 3456677777765553 223456665442 34778888888 99999999999887432 233344444
No 161
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=56.07 E-value=27 Score=18.56 Aligned_cols=26 Identities=15% Similarity=0.598 Sum_probs=20.2
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEE
Q 048139 69 LRELNVVVWNSHTLTPDEFIGSGRIQ 94 (115)
Q Consensus 69 ~~~L~~~v~~~~~~~~~~~lG~~~v~ 94 (115)
....+|++|+.+....|++++.+...
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEEC
Confidence 35667999999976788999886653
No 162
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=53.89 E-value=3.5 Score=31.14 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC--CCceEEEEEEeCCC
Q 048139 29 RQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE--GLRELNVVVWNSHT 81 (115)
Q Consensus 29 ~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~L~~~v~~~~~ 81 (115)
..++++...++.+.++|+.... +.+|+|||. .++... ...-|...|.+++.
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~-~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~ 356 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDD-TEKPIYNED-EREDSDFQSNRYLGNKIVGYCE 356 (975)
T ss_pred CCCchheeecchhhhhhhhhcc-ccccccccc-ccccccchhhHHHhhhcccccc
Confidence 3568888888999999998776 999999996 445422 22334444444443
No 163
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=52.10 E-value=43 Score=19.06 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=21.2
Q ss_pred CceEEEEEEeCCC---CCCCceeEEEEEEcchhh
Q 048139 69 LRELNVVVWNSHT---LTPDEFIGSGRIQLHKAL 99 (115)
Q Consensus 69 ~~~L~~~v~~~~~---~~~~~~lG~~~v~l~~l~ 99 (115)
...|.+.+++-.. .....++|.+.+++.+..
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~ 61 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAF 61 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHH
Confidence 3567776665432 345668999999988775
No 164
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.84 E-value=28 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=19.8
Q ss_pred ceEEEEEEeCCCCCCCceeEEEEE
Q 048139 70 RELNVVVWNSHTLTPDEFIGSGRI 93 (115)
Q Consensus 70 ~~L~~~v~~~~~~~~~~~lG~~~v 93 (115)
..|.++||..++.++.++-|....
T Consensus 74 prl~~qiw~~dnfgr~eiagyg~~ 97 (175)
T KOG4028|consen 74 PRLHFQIWHHDNFGRCEIAGYGFC 97 (175)
T ss_pred ceeeeeeeecCcccceeecccceE
Confidence 689999999999999887766444
No 165
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=44.53 E-value=1e+02 Score=23.87 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=52.0
Q ss_pred EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCC---CCCCce
Q 048139 11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHT---LTPDEF 87 (115)
Q Consensus 11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~---~~~~~~ 87 (115)
+.|.|...++|.... .+.-.||.+.+.+.+..|.-.. ..-|.|+-.=.|........+++.+|.... .-.|+-
T Consensus 343 mevvvmevqglksva--pnrivyctmevegeklqtdqae--askp~wgtqgdfstthplpvvkvklftestgvlaledke 418 (1218)
T KOG3543|consen 343 MEVVVMEVQGLKSVA--PNRIVYCTMEVEGEKLQTDQAE--ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKE 418 (1218)
T ss_pred eeEEEeeeccccccC--CCeeEEEEEEecccccccchhh--hcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechh
Confidence 345555666664322 2234688888888888777643 668999977677765566778888887542 123556
Q ss_pred eEEEEEE
Q 048139 88 IGSGRIQ 94 (115)
Q Consensus 88 lG~~~v~ 94 (115)
+|.+-+.
T Consensus 419 lgrvil~ 425 (1218)
T KOG3543|consen 419 LGRVILQ 425 (1218)
T ss_pred hCeEEEe
Confidence 7876654
No 166
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=36.36 E-value=78 Score=17.72 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=24.5
Q ss_pred eceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhh
Q 048139 57 FQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKAL 99 (115)
Q Consensus 57 w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~ 99 (115)
++..+.|.++.....+.++|.|.. .++.|-+ +|..+++
T Consensus 53 ~~~~l~F~vde~~~~~vVkViD~~---T~eVIRq--IP~Ee~l 90 (107)
T PF03646_consen 53 LNTSLRFSVDEESGRVVVKVIDKE---TGEVIRQ--IPPEELL 90 (107)
T ss_dssp SS--EEEEEEEETTEEEEEEEETT---T-SEEEE--E-HHHHH
T ss_pred cCCceEEEEecCCCcEEEEEEECC---CCcEEEe--CCcHHHH
Confidence 566688888776678999999977 3456655 6655543
No 167
>PHA02919 host-range protein; Provisional
Probab=29.25 E-value=76 Score=19.29 Aligned_cols=52 Identities=27% Similarity=0.303 Sum_probs=24.0
Q ss_pred ccccCceEEEEEeeecCCCCCCCCCCCCcE-EEEEECCe-EEEEEEecCCCCCCeece
Q 048139 4 SGIQGLPLEITVVGCYNLDDKEWISRQDPY-VCLEYGSS-KYRTKTCTDGGKNPTFQE 59 (115)
Q Consensus 4 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~p~-~~~~~~~~-~~~t~~~~~~~~~P~w~e 59 (115)
||+. +.|.+-|.+.-.|+..+ ..+.|.| |.+.+... .++-+.+- -..|.|.|
T Consensus 1 MGI~-HeldIfv~enialK~v~-L~kGdsYGC~i~lk~~~~K~~~fi~--vLePdWse 54 (150)
T PHA02919 1 MGIQ-HEFDIIINGDIALRNLQ-LHRGDNYGCKLKIISNDYKKLKFRF--IIRPDWSE 54 (150)
T ss_pred CCce-EEEEEEEeCCcccceee-eccCCccceEEEEEECCceEEEEEE--EEccChhh
Confidence 3443 45666544333333222 2355666 66665422 22222221 35788976
No 168
>PRK08868 flagellar protein FlaG; Provisional
Probab=23.80 E-value=1.8e+02 Score=17.71 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=26.1
Q ss_pred eeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchh
Q 048139 56 TFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKA 98 (115)
Q Consensus 56 ~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l 98 (115)
.++..+.|.++.....+.|+|.|... +++|=+ +|-.++
T Consensus 86 ~~n~~L~F~vdeetgr~VVkViD~~T---~EVIRQ--IP~Ee~ 123 (144)
T PRK08868 86 SINKGLSFRVDEESGRDVVTIYEAST---GDIIRQ--IPDEEM 123 (144)
T ss_pred hhcCceEEEEecCCCCEEEEEEECCC---Cceeee--CCCHHH
Confidence 35677888887777788899998763 455544 555544
No 169
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.78 E-value=2.2e+02 Score=17.85 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.1
Q ss_pred ceEEEEEEeCCCCCCCceeEEEEEEcc
Q 048139 70 RELNVVVWNSHTLTPDEFIGSGRIQLH 96 (115)
Q Consensus 70 ~~L~~~v~~~~~~~~~~~lG~~~v~l~ 96 (115)
..+.+.||..+..++|-+.|...+++-
T Consensus 83 Pqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 83 PQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred ceEEEEEecCCcCCcceeeeeeeEecC
Confidence 578899999999999999998877654
Done!