BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>048140
MDGEKRDEKDGSKSLDDGKMIQVCDKLIEVFMVDKPTPTDWRRLLVFSKEWNNLRSNFFK
RCQDRADAEVDPEMKHKLLRLGRKLKEIDEDVQSHNELLEVIEAAPSEVSQIVSRRCKDF
TQEFFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDII
NSPSVDAACRKIDSLAEKNQLDSALVLMITKAWSAAKESNMMKEEVKDILYHLYMTARGN
LQRLMPKEVRILKYLLTIEDPEERLCGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTL
VDAYNFSREGSLLKEAKDMMNPNMIEKIEELRKL

High Scoring Gene Products

Symbol, full name Information P value
AT1G36320 protein from Arabidopsis thaliana 2.8e-128
AT4G37920 protein from Arabidopsis thaliana 1.1e-73

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  048140
        (334 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2035957 - symbol:AT1G36320 "AT1G36320" species...  1259  2.8e-128  1
TAIR|locus:2121036 - symbol:AT4G37920 "AT4G37920" species...   744  1.1e-73   1


>TAIR|locus:2035957 [details] [associations]
            symbol:AT1G36320 "AT1G36320" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009073 "aromatic amino acid family biosynthetic
            process" evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] EMBL:CP002684 EMBL:AC021199 HOGENOM:HOG000237806
            EMBL:AY057493 EMBL:AY085614 EMBL:AY103296 IPI:IPI00539746
            PIR:D86484 RefSeq:NP_564471.1 UniGene:At.18045 PRIDE:Q9C8X8
            EnsemblPlants:AT1G36320.1 GeneID:840539 KEGG:ath:AT1G36320
            TAIR:At1g36320 InParanoid:Q9C8X8 OMA:EVRILKY PhylomeDB:Q9C8X8
            ProtClustDB:CLSN2688352 Genevestigator:Q9C8X8 Uniprot:Q9C8X8
        Length = 414

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 239/333 (71%), Positives = 292/333 (87%)

Query:     5 KRDEKDGSKSL--DDGKMIQVCDKLIEVFMVDKPTPTDWRRLLVFSKEWNNLRSNFFKRC 62
             K ++KDGS+ +  D+ +MI+VCDKLIEVFMVDKPTP+DWRRLL FSKEW+++R +F+KRC
Sbjct:    76 KEEKKDGSEEVVVDNQRMIKVCDKLIEVFMVDKPTPSDWRRLLAFSKEWDSIRPHFYKRC 135

Query:    63 QDRADAEVDPEMXXXXXXXXXXXXEIDEDVQSHNELLEVIEAAP-SEVSQIVSRRCKDFT 121
             Q+RAD+E +PEM            E+DED+Q HNELL VI+  P +E+ ++V+RR KDFT
Sbjct:   136 QERADSEDNPEMKHKVHRLARKLKEVDEDIQRHNELLNVIKRTPPAEIGELVARRRKDFT 195

Query:   122 QEFFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDIIN 181
              EFFEHLHTVAESYY++P +Q+ +A LGKL +AAVQAYDT+TESI+ALNAAE+K QDIIN
Sbjct:   196 NEFFEHLHTVAESYYDNPDEQNALASLGKLSIAAVQAYDTSTESIDALNAAEMKLQDIIN 255

Query:   182 SPSVDAACRKIDSLAEKNQLDSALVLMITKAWSAAKESNMMKEEVKDILYHLYMTARGNL 241
             SPS+DAACRKIDSLAEKNQLDSALVLMITKAWSAAKESNMMKEEVKDILYHLY+TARGNL
Sbjct:   256 SPSLDAACRKIDSLAEKNQLDSALVLMITKAWSAAKESNMMKEEVKDILYHLYVTARGNL 315

Query:   242 QRLMPKEVRILKYLLTIEDPEERLCGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTLV 301
             QRLMPKEVRILKYLL+IEDP+E++  L+DAFTPG+E+EG DVD LYTTPE L +LMKT++
Sbjct:   316 QRLMPKEVRILKYLLSIEDPQEQISALQDAFTPGDELEGTDVDYLYTTPEHLQSLMKTVL 375

Query:   302 DAYNFSREGSLLKEAKDMMNPNMIEKIEELRKL 334
             +AY+FSREGSL+KEAKD+M+P +I KIE+L+KL
Sbjct:   376 EAYHFSREGSLVKEAKDLMHPELIAKIEQLKKL 408


>TAIR|locus:2121036 [details] [associations]
            symbol:AT4G37920 "AT4G37920" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161592 GO:GO:0009941
            EMBL:AL035538 GO:GO:0009535 PIR:T05619 EMBL:BT002988
            IPI:IPI00538492 RefSeq:NP_195505.2 UniGene:At.43573 PaxDb:Q84WN0
            PRIDE:Q84WN0 EnsemblPlants:AT4G37920.1 GeneID:829948
            KEGG:ath:AT4G37920 TAIR:At4g37920 eggNOG:NOG298618
            HOGENOM:HOG000237806 OMA:TIEDEYL PhylomeDB:Q84WN0
            ProtClustDB:CLSN2918855 Genevestigator:Q84WN0 Uniprot:Q84WN0
        Length = 427

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 137/309 (44%), Positives = 210/309 (67%)

Query:    20 MIQVCDKLIEVFMVDKPTPTDWRRLLVFSKEWNNLRSNFFKRCQDRADAEVDPEMXXXXX 79
             M Q CDK+I++F+ +KP    W+  LV   EWN    NF+KRC+ RAD E DP +     
Sbjct:    83 MAQFCDKIIDLFLNEKPKVKQWKTYLVLRDEWNKYSVNFYKRCRIRADTETDPILKQKLV 142

Query:    80 XXXXXXXEIDEDVQSHNELLEVIEAAPSEVSQIVSRRCKDFTQEFFEHLHTVAESYYNDP 139
                    +ID++++ HN+LL+ I+  P++++ I ++R +DFT EFF ++  ++E+  +  
Sbjct:   143 SLESKVKKIDKEMEKHNDLLKEIQENPTDINAIAAKRRRDFTGEFFRYVTLLSETL-DGL 201

Query:   140 AKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDIINSPSVDAACRKIDSLAEKN 199
               +D +A+L   C++AV AYD T ES+E L+ A+ KF+DI+NSPSVD+AC KI SLA+  
Sbjct:   202 EDRDAVARLATRCLSAVSAYDNTLESVETLDTAQAKFEDILNSPSVDSACEKIRSLAKAK 261

Query:   200 QLDSALVLMITKAWSAAKESNMMKEEVKDILYHLYMTARGNLQRLMPKEVRILKYLLTIE 259
             +LDS+L+L+I  A++AAKES  +  E KDI+YHLY   + +L+ + PKE+++LKYLL I 
Sbjct:   262 ELDSSLILLINSAYAAAKESQTVTNEAKDIMYHLYKATKSSLRSITPKEIKLLKYLLNIT 321

Query:   260 DPEERLCGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTLVDAYNFSREGSLLKEAKDM 319
             DPEER   L  AF+PG++ E KD   LYTTP+ LH  +K ++DAY+ ++E + +KEAK M
Sbjct:   322 DPEERFSALATAFSPGDDHEAKDPKALYTTPKELHKWIKIMLDAYHLNKEETDIKEAKQM 381

Query:   320 MNPNMIEKI 328
               P +I+++
Sbjct:   382 SQPIVIQRL 390


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      334       322   0.00085  116 3  11 22  0.42    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  223 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.10u 0.10s 29.20t   Elapsed:  00:00:01
  Total cpu time:  29.10u 0.10s 29.20t   Elapsed:  00:00:01
  Start:  Fri May 10 11:27:51 2013   End:  Fri May 10 11:27:52 2013

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