BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048140
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DT9|A Chain A, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Flavus
pdb|2DT9|B Chain B, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Flavus
pdb|2ZHO|A Chain A, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|B Chain B, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|C Chain C, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|D Chain D, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|E Chain E, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|F Chain F, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
Length = 167
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 118 KDFTQEFFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAV----------QAYDTTTESIE 167
KDF QE E L V + + DIAK+ + V QA +T +IE
Sbjct: 68 KDFAQEALEALEPVLAEIGGEAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIE 127
Query: 168 ALNAAELKFQDIINSPSVDAACRKI 192
+ +E++ II + +AA R +
Sbjct: 128 MIATSEVRISVIIPAEYAEAALRAV 152
>pdb|3P09|A Chain A, Crystal Structure Of Beta-Lactamase From Francisella
Tularensis
pdb|3P09|B Chain B, Crystal Structure Of Beta-Lactamase From Francisella
Tularensis
Length = 290
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 139 PAKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDIINSPSVDAACRKIDSLAEK 198
P QDDI KLG + A T T I LN A + + +SP+ + R++ L
Sbjct: 90 PINQDDIGKLGYAPITAKNVGKTLT--ISQLNYAAI----LSDSPASNILVRELGGLQNL 143
Query: 199 NQL-------DSALVLMITKAWSAAKESNMMKEEVKDILYHLYMTARGNLQRLMPKEVRI 251
N+ D+ + + SN+ K K I +Y A GN+ K++ I
Sbjct: 144 NKFIKKLGDNDTIITADEPEINYTQPHSNINKTTPKAITKDIYKLAFGNILDKKHKDIFI 203
Query: 252 LKYL 255
KYL
Sbjct: 204 -KYL 206
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 247 KEVRILKYLLTIEDPEERLCGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTLVDAYNF 306
+E+R+LK+L E + GL D FTP IE D +Y ++ A + +V +
Sbjct: 76 RELRLLKHL-----KHENVIGLLDVFTPATSIE--DFSEVYLVTTLMGADLNNIVKSQAL 128
Query: 307 SRE 309
S E
Sbjct: 129 SDE 131
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 247 KEVRILKYLLTIEDPEERLCGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTLVDAYNF 306
+E+R+LK+L E + GL D FTP IE D +Y ++ A + +V
Sbjct: 68 RELRLLKHL-----KHENVIGLLDVFTPATSIE--DFSEVYLVTTLMGADLNNIVKCQAL 120
Query: 307 SRE 309
S E
Sbjct: 121 SDE 123
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 247 KEVRILKYLLTIEDPEERLCGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTLVDAYNF 306
+E+R+LK+L E + GL D FTP IE D +Y ++ A + +V
Sbjct: 76 RELRLLKHL-----KHENVIGLLDVFTPATSIE--DFSEVYLVTTLMGADLNNIVKCQAL 128
Query: 307 SRE 309
S E
Sbjct: 129 SDE 131
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
Nicotinate Phosphoribosyltransferase, New York
Structural Genomics Consortium
Length = 494
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 127 HLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDIIN--SPS 184
H H++ +SY ND AK + CV V YDT + + + D IN
Sbjct: 203 HAHSLVQSYGNDYEAFMAYAKTHRDCVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVR 262
Query: 185 VDAACRKIDSLAEKNQLDSA 204
+D+ S + QLD A
Sbjct: 263 IDSGDMAYISKRVREQLDEA 282
>pdb|2AFR|A Chain A, The Crystal Structure Of Putative Precorrin Isomerase Cbic
In Cobalamin Biosynthesis
pdb|2AFV|A Chain A, The Crystal Structure Of Putative Precorrin Isomerase Cbic
In Cobalamin Biosynthesis
pdb|2AFV|B Chain B, The Crystal Structure Of Putative Precorrin Isomerase Cbic
In Cobalamin Biosynthesis
Length = 231
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 164 ESIEALNAAELKFQDIINSPSVDAACRKIDSLAEKNQLDSALVLMITKAWSAAKES--NM 221
ESI+ N+ L + II + A +I+ L + + AL++ + + +AKES ++
Sbjct: 121 ESIQKANSFNLLNESIIVIGNAPTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESI 180
Query: 222 MKEE---VKDILYHLYMTARGN 240
+K E V I Y L M +G
Sbjct: 181 LKLEYYNVTSIPYILTMGRKGG 202
>pdb|3FKA|A Chain A, Crystal Structure Of A Ntf-2 Like Protein Of Unknown
Function (spo1084) From Silicibacter Pomeroyi Dss-3 At
1.69 A Resolution
pdb|3FKA|B Chain B, Crystal Structure Of A Ntf-2 Like Protein Of Unknown
Function (spo1084) From Silicibacter Pomeroyi Dss-3 At
1.69 A Resolution
pdb|3FKA|C Chain C, Crystal Structure Of A Ntf-2 Like Protein Of Unknown
Function (spo1084) From Silicibacter Pomeroyi Dss-3 At
1.69 A Resolution
pdb|3FKA|D Chain D, Crystal Structure Of A Ntf-2 Like Protein Of Unknown
Function (spo1084) From Silicibacter Pomeroyi Dss-3 At
1.69 A Resolution
Length = 120
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 51 WNNLRSNFFKRCQDRADAEVDP 72
WN+ R F C+D ADAE DP
Sbjct: 50 WNS-RDAFIAXCEDAADAETDP 70
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 266 CGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTL 300
CGL D EI KD+ + TPE+++ L L
Sbjct: 759 CGLADKSXKLFEIYSKDIPAAFVTPEIVYRLASXL 793
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 266 CGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTL 300
CGL D EI KD+ + TPE+++ L L
Sbjct: 745 CGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASML 779
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 266 CGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTL 300
CGL D EI KD+ + TPE+++ L L
Sbjct: 759 CGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASML 793
>pdb|1SZH|A Chain A, Crystal Structure Of C. Elegans Her-1
pdb|1SZH|B Chain B, Crystal Structure Of C. Elegans Her-1
Length = 161
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 172 AELKFQDIINSPSVDAACRKIDSLAEKNQLDSALVLMITKAWSAAKES 219
E + ++++ SPS+DAA R +DS+ + LD+ L K S K+
Sbjct: 90 CENRCKNLMTSPSIDAATR-LDSIKSCSLLDNVLYKCFEKCRSLRKDG 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,518,643
Number of Sequences: 62578
Number of extensions: 369207
Number of successful extensions: 1274
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1264
Number of HSP's gapped (non-prelim): 28
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)