Query 048140
Match_columns 334
No_of_seqs 44 out of 46
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 11:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etr_A Putative uncharacterize 54.3 34 0.0012 28.4 6.8 129 142-271 13-151 (153)
2 3bzc_A TEX; helix-turn-helix, 48.8 75 0.0026 33.8 9.9 88 194-301 80-170 (785)
3 4etr_A Putative uncharacterize 48.5 94 0.0032 25.6 8.7 30 54-86 25-54 (153)
4 1lva_A Selenocysteine-specific 45.9 47 0.0016 29.7 6.9 91 224-321 137-227 (258)
5 2krx_A ASL3597 protein; struct 41.9 12 0.00041 30.5 2.0 38 284-321 20-64 (94)
6 3g43_E Voltage-dependent L-typ 40.9 54 0.0019 26.0 5.6 50 199-248 1-53 (81)
7 4db8_A Armadillo-repeat protei 39.1 1.5E+02 0.0051 24.3 8.5 141 117-269 6-160 (252)
8 1naf_A ADP-ribosylation factor 38.0 40 0.0014 29.3 4.9 106 174-279 20-148 (158)
9 4db6_A Armadillo repeat protei 35.2 48 0.0017 26.6 4.7 139 117-269 6-160 (210)
10 1w6t_A Enolase; bacterial infe 32.4 93 0.0032 30.2 7.0 82 222-306 184-297 (444)
11 3qk9_A Mitochondrial import in 32.1 47 0.0016 30.1 4.5 92 46-156 8-112 (222)
12 3txn_A 26S proteasome regulato 30.9 2.4E+02 0.0083 27.2 9.6 133 47-202 193-347 (394)
13 1s0p_A CAP, adenylyl cyclase-a 29.7 1.3E+02 0.0045 26.4 6.9 55 76-135 42-96 (176)
14 2nsz_A Programmed cell death p 29.5 1.5E+02 0.0051 24.0 6.8 60 172-235 10-71 (129)
15 2ion_A PDCD4, programmed cell 29.3 1.4E+02 0.0049 25.0 6.8 60 172-235 12-73 (152)
16 2pv4_A Uncharacterized protein 27.7 88 0.003 27.1 5.2 34 95-128 42-76 (145)
17 2qk1_A Protein STU2; STU2P, XM 25.5 3.1E+02 0.011 23.9 8.6 81 186-269 122-213 (249)
18 3tqp_A Enolase; energy metabol 25.3 1.6E+02 0.0054 28.8 7.3 73 224-306 178-281 (428)
19 2pjw_H Uncharacterized protein 24.9 87 0.003 24.9 4.4 36 127-165 50-85 (88)
20 3iqt_A Signal transduction his 24.3 1.9E+02 0.0066 23.2 6.5 22 179-200 74-95 (123)
21 2oj4_A RGS3, regulator of G-pr 23.7 2.5E+02 0.0085 21.6 7.2 71 90-185 2-72 (127)
22 2fu2_A Hypothetical protein SP 22.1 1.9E+02 0.0066 22.8 6.0 72 201-276 22-101 (102)
23 1j2j_B ADP-ribosylation factor 22.1 92 0.0031 22.2 3.6 25 174-198 11-38 (45)
24 1vyk_A Oxygen-evolving enhance 21.9 1.4E+02 0.0046 25.8 5.4 50 128-180 89-138 (149)
25 3k6c_A Uncharacterized protein 21.9 2E+02 0.0067 23.3 6.0 46 63-114 38-83 (95)
26 1oxz_A ADP-ribosylation factor 21.7 2.5E+02 0.0086 24.8 7.2 106 173-278 35-163 (186)
27 3gs3_A Symplekin, LD45768P; he 21.5 1.9E+02 0.0067 26.3 6.7 97 169-268 10-111 (257)
28 2khf_A PLNJ; anti-microbial, b 21.3 28 0.00096 22.1 0.7 18 49-66 5-22 (26)
29 3fcn_A AN alpha-helical protei 21.0 3.7E+02 0.013 23.4 8.0 35 166-219 85-119 (164)
30 1huw_A Human growth hormone; 2 20.7 91 0.0031 27.4 4.1 48 285-333 67-119 (191)
31 1agr_E RGS4; GI-alpha-1, hydro 20.2 2.3E+02 0.008 24.7 6.7 72 89-185 53-124 (205)
No 1
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=54.31 E-value=34 Score=28.40 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhCCcc--hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 048140 142 QDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDIINSPS--VDAACRKIDSLAEKNQLDSALVLMITKAWSAAKES 219 (334)
Q Consensus 142 ~~~La~L~~~claaveAyD~a~~d~~~L~~A~~kf~dILnS~S--ldaa~~KId~LAe~~eLDsaLvLli~kA~aAAKeS 219 (334)
-+.|-.|=..|..++++|..+.+..+.- .-+..|..+.+.-. ..+....|..|-..=+-.+++.-.+..+|...|..
T Consensus 13 i~~Ln~Li~~~~D~~~gY~~aae~~~d~-~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~~g~~hr~~~~lks~ 91 (153)
T 4etr_A 13 LDVLNDLLQTSKDGEAGFHACAEDLRDP-QLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSL 91 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4456666677888999999988874321 23344444443321 12222233332222236778888999999987754
Q ss_pred hhh------hHHHHHHHHHHHHHHHhhhhhcCchhHH--HHHHHhccCChHHHHhhhhhh
Q 048140 220 NMM------KEEVKDILYHLYMTARGNLQRLMPKEVR--ILKYLLTIEDPEERLCGLKDA 271 (334)
Q Consensus 220 ~~~------k~EvKDIm~hLY~~ak~~l~r~~PkEvr--ilkyLL~IeDP~er~~aL~~A 271 (334)
=.. =+++...--+.-...+..+..-.|+++| |-+++-.|..=-+++..|.+|
T Consensus 92 ~~~~~~~~iL~~~~~gE~~~~~~Y~~al~~~lp~~~r~ll~~q~~~~~~~~d~~~~Lr~~ 151 (153)
T 4etr_A 92 VTGKDEEAVLNECERGEDVAKHRYQAALEKSLPAEIHQVIERQYQGVLRHHDRVRALRDA 151 (153)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 322 2233222223333334444455888886 345666666666666666654
No 2
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=48.78 E-value=75 Score=33.82 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=46.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH---HHHhhhhhcCchhHHHHHHHhccCChHHHHhhhhh
Q 048140 194 SLAEKNQLDSALVLMITKAWSAAKESNMMKEEVKDILYHLYM---TARGNLQRLMPKEVRILKYLLTIEDPEERLCGLKD 270 (334)
Q Consensus 194 ~LAe~~eLDsaLvLli~kA~aAAKeS~~~k~EvKDIm~hLY~---~ak~~l~r~~PkEvrilkyLL~IeDP~er~~aL~~ 270 (334)
.+.+.|.|++.|...|. +..+++|+.||-. =|+ .+|+++.+-.-=|- +-..||+ ||..-...++.
T Consensus 80 ~i~~qg~lt~~l~~~i~--------~a~t~~eleDly~-pyk~krrtka~~a~e~GLep-lA~~l~~--~~~~~p~~~A~ 147 (785)
T 3bzc_A 80 SIEEQGKLTPELARDIK--------LADTKTRLEDLYL-PYKQKRRTKGQIALEAGLGA-LADALFD--DPTLVPESEAA 147 (785)
T ss_dssp HHHHTTCCCHHHHHHHH--------HCCSHHHHHHHHG-GGSCCCCCHHHHHHHTTTHH-HHHHHHH--CTTSCHHHHHH
T ss_pred HHHHccCCCHHHHHHHH--------hcCcHHHHHHHHh-ccCCCCCCHHHHHHHcCCHH-HHHHHHc--CCCCCHHHHHH
Confidence 44455899998765443 3456778888432 232 23333333221111 4444554 55433445566
Q ss_pred hcCCCccccccCcccccCChHHHHHHHHHHH
Q 048140 271 AFTPGEEIEGKDVDTLYTTPEMLHALMKTLV 301 (334)
Q Consensus 271 AFtPG~e~e~~d~d~LyttP~~L~~~i~~il 301 (334)
.|.-. +-=+.|++..+.-...|+
T Consensus 148 ~~v~~--------~~~~~~~~~al~ga~~il 170 (785)
T 3bzc_A 148 RFVDA--------EKGFADVKAVLEGAKYIL 170 (785)
T ss_dssp TTCCS--------SSSCCSHHHHHHHHHHHH
T ss_pred HHhCc--------ccCCCCHHHHHHHHHHHH
Confidence 66521 112677787777666665
No 3
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=48.46 E-value=94 Score=25.64 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=20.1
Q ss_pred hhhhhHHHhHHhhhhccCHHHHHHHHHHHHHhh
Q 048140 54 LRSNFFKRCQDRADAEVDPEMKHKLLRLGRKLK 86 (334)
Q Consensus 54 ~R~~ff~Rc~~rA~~e~Dp~~k~kl~~L~Rklk 86 (334)
-.-.+|+++-+.+ .||..|.-|...+..-+
T Consensus 25 D~~~gY~~aae~~---~d~~lk~~f~~~a~~~~ 54 (153)
T 4etr_A 25 DGEAGFHACAEDL---RDPQLKAAMLEQSRDCA 54 (153)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
Confidence 3556788876665 68988887666654443
No 4
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=45.88 E-value=47 Score=29.73 Aligned_cols=91 Identities=22% Similarity=0.182 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHhccCChHHHHhhhhhhcCCCccccccCcccccCChHHHHHHHHHHHHH
Q 048140 224 EEVKDILYHLYMTARGNLQRLMPKEVRILKYLLTIEDPEERLCGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTLVDA 303 (334)
Q Consensus 224 ~EvKDIm~hLY~~ak~~l~r~~PkEvrilkyLL~IeDP~er~~aL~~AFtPG~e~e~~d~d~LyttP~~L~~~i~~ilda 303 (334)
++...+...|+...+. +...||.++=|---+.+ |+.+-...|..+..-|.-+.-. +-+|.+|+.+.+.++.|.+-
T Consensus 137 ~~~~~~~~~i~~~~~~--~g~~pp~~~dl~~~l~~-~~~~~~~~l~~l~~~g~lv~l~--~~~~~~~~~~~~~~~~l~~~ 211 (258)
T 1lva_A 137 ETQKKLLKDLEDKYRV--SRWQPPSFKEVAGSFNL-DPSELEELLHYLVREGVLVKIN--DEFYWHRQALGEAREVIKNL 211 (258)
T ss_dssp HHHHHHHHHHHHHHHH--HTTSCCBHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEESS--SSBEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCCCCHHHHHhHhCC-CHHHHHHHHHHHHHCCCEEEec--CCeEEcHHHHHHHHHHHHHH
Confidence 3455555566555532 45678888866666666 5666678888888888766643 46888998888877777655
Q ss_pred hhhccccchHHHHHhhcC
Q 048140 304 YNFSREGSLLKEAKDMMN 321 (334)
Q Consensus 304 y~~~~~~tl~~eA~~l~~ 321 (334)
+ ..+.--+.++|++++
T Consensus 212 ~--~~~~it~a~~Rd~lg 227 (258)
T 1lva_A 212 A--STGPFGLAEARDALG 227 (258)
T ss_dssp H--TTSCBCHHHHHHHHT
T ss_pred H--hcCCcCHHHHHHHhC
Confidence 4 557778888888875
No 5
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=41.92 E-value=12 Score=30.49 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=29.7
Q ss_pred ccccCChHHHHHHHHHHHHHh-------hhccccchHHHHHhhcC
Q 048140 284 DTLYTTPEMLHALMKTLVDAY-------NFSREGSLLKEAKDMMN 321 (334)
Q Consensus 284 d~LyttP~~L~~~i~~ilday-------~~~~~~tl~~eA~~l~~ 321 (334)
+==|.||++|+.|++.+|..+ ++.+-+|+-.+|+-|++
T Consensus 20 ~EqfLT~~Ell~~Lk~~L~~~~~~~LP~dL~~~~s~~~qaq~Lld 64 (94)
T 2krx_A 20 PEQFLTTIELLEKLKGELEKISFSDLPLELQKLDSLPAQAQHLID 64 (94)
T ss_dssp CSEEECHHHHHHHHHHHHHHSCTTTSCHHHHHCCCHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhCccccCCHHHHhCCCHHHHHHHHHH
Confidence 334789999999999999999 34444788888877764
No 6
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=40.93 E-value=54 Score=25.98 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=35.3
Q ss_pred ccCCHHHHHHHHHHHH--HhhhchhhhHHHHHHHHHHHH-HHHhhhhhcCchh
Q 048140 199 NQLDSALVLMITKAWS--AAKESNMMKEEVKDILYHLYM-TARGNLQRLMPKE 248 (334)
Q Consensus 199 ~eLDsaLvLli~kA~a--AAKeS~~~k~EvKDIm~hLY~-~ak~~l~r~~PkE 248 (334)
|-++++|++||-.|.. -+.+-.+..+|...++.+++. +.+..|+..+||.
T Consensus 1 ~~ftsTLfALIRtsL~IK~~~~~~~~d~ELR~~i~~iWp~~~~k~lD~lvpp~ 53 (81)
T 3g43_E 1 GPLGSTLFALVRTALRIKTEGNLEQANEELRAIIKKIWKRTSMKLLDQVVPPA 53 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CchhHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHCcccChhhcccccCCC
Confidence 4578999999988854 344556778899999999987 6777888899974
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=39.14 E-value=1.5e+02 Score=24.34 Aligned_cols=141 Identities=12% Similarity=0.119 Sum_probs=67.2
Q ss_pred ccCCChHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhCCcc---hHHHHHHHH
Q 048140 117 CKDFTQEFFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDIINSPS---VDAACRKID 193 (334)
Q Consensus 117 RkdFT~eFF~hL~~~~ea~~d~~dr~~~La~L~~~claaveAyD~a~~d~~~L~~A~~kf~dILnS~S---ldaa~~KId 193 (334)
+...++.+|..+...+.+- +...+..++..|++.+-..-+..+...+ ..+-..|-.+|++++ ...|+..|-
T Consensus 6 ~~~~~~~~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~-----~g~i~~L~~lL~~~~~~v~~~a~~~L~ 79 (252)
T 4db8_A 6 HHHHHGSELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVID-----AGALPALVQLLSSPNEQILQEALWALS 79 (252)
T ss_dssp CCCCTTCSHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHH-----TTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHH-----cCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444555566666666664 4455566666665443331111111111 124456777888877 345667777
Q ss_pred HHHHhcc----------CCHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhhhhh-cCchhHHHHHHHhccCChH
Q 048140 194 SLAEKNQ----------LDSALVLMITKAWSAAKESNMMKEEVKDILYHLYMTARGNLQR-LMPKEVRILKYLLTIEDPE 262 (334)
Q Consensus 194 ~LAe~~e----------LDsaLvLli~kA~aAAKeS~~~k~EvKDIm~hLY~~ak~~l~r-~~PkEvrilkyLL~IeDP~ 262 (334)
+|+..+. .=|.|+-++.. .+......+-.++.+|-.......+. ..+.=+..|-.+|+-.||.
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 153 (252)
T 4db8_A 80 NIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 153 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 7775321 11233333321 33445555555555552211111000 0111234455566667777
Q ss_pred HHHhhhh
Q 048140 263 ERLCGLK 269 (334)
Q Consensus 263 er~~aL~ 269 (334)
-|.+++.
T Consensus 154 v~~~a~~ 160 (252)
T 4db8_A 154 ILQEALW 160 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 8
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=37.97 E-value=40 Score=29.27 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=52.6
Q ss_pred HHhhhhhCCcc---hHHHHHHHHHHHHhccCCHHHHHHHHHH--------------HHHhhhchhhhHHHHHHHHHHHHH
Q 048140 174 LKFQDIINSPS---VDAACRKIDSLAEKNQLDSALVLMITKA--------------WSAAKESNMMKEEVKDILYHLYMT 236 (334)
Q Consensus 174 ~kf~dILnS~S---ldaa~~KId~LAe~~eLDsaLvLli~kA--------------~aAAKeS~~~k~EvKDIm~hLY~~ 236 (334)
.+|+.+|.|+. +.+|.+-|+.||...+=.+.-+.-.... ..+....+....-=.++|--||.+
T Consensus 20 ~~L~~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~ 99 (158)
T 1naf_A 20 KMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQR 99 (158)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHH
T ss_pred HHHHHHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHH
Confidence 58999999976 6699999999997544333333222223 333322222211012677777766
Q ss_pred HHh---hhhhcCchh---HHHHHHHhccCChHHHHhhhhhhcCCCcccc
Q 048140 237 ARG---NLQRLMPKE---VRILKYLLTIEDPEERLCGLKDAFTPGEEIE 279 (334)
Q Consensus 237 ak~---~l~r~~PkE---vrilkyLL~IeDP~er~~aL~~AFtPG~e~e 279 (334)
-+. .+.++.... -..|--||.+.|.-.+.=.--++|.+|....
T Consensus 100 Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~ 148 (158)
T 1naf_A 100 CERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVN 148 (158)
T ss_dssp HHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCC
Confidence 543 333333221 1244555666555555444445555555443
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=35.15 E-value=48 Score=26.61 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=65.3
Q ss_pred ccCCChHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH--HHHHHhhhhhCCcc---hHHHHHH
Q 048140 117 CKDFTQEFFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEALN--AAELKFQDIINSPS---VDAACRK 191 (334)
Q Consensus 117 RkdFT~eFF~hL~~~~ea~~d~~dr~~~La~L~~~claaveAyD~a~~d~~~L~--~A~~kf~dILnS~S---ldaa~~K 191 (334)
.+.+...++..|..++.+- +..-+..++..|++.+. .+.... +.+. .+-..+-.+|++++ ...|+..
T Consensus 6 ~~~~~~~~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~-----~~~~~~--~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~ 77 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLNSP-DQQELQSALRKLSQIAS-----GGNEQI--QAVIDAGALPALVQLLSSPNEQILQEALWA 77 (210)
T ss_dssp -------CHHHHHHHTTCS-CHHHHHHHHHHHHHHHT-----SCHHHH--HHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ccccccchhHHHHHHhcCC-CHHHHHHHHHHHHHHHc-----CCHHHH--HHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 4455566667777766542 22223344444444331 111111 1111 34556778888887 4567777
Q ss_pred HHHHHHhcc----------CCHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhhhhhcC-chhHHHHHHHhccCC
Q 048140 192 IDSLAEKNQ----------LDSALVLMITKAWSAAKESNMMKEEVKDILYHLYMTARGNLQRLM-PKEVRILKYLLTIED 260 (334)
Q Consensus 192 Id~LAe~~e----------LDsaLvLli~kA~aAAKeS~~~k~EvKDIm~hLY~~ak~~l~r~~-PkEvrilkyLL~IeD 260 (334)
|-+|+..+. .=|.|+-++.. .+..++..+-.++.+|-....+..+... ..=+..|-.+|+-.|
T Consensus 78 L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 151 (210)
T 4db6_A 78 LSNIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151 (210)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHhcCCcHHHHHHHHCCCHHHHHHHHcC------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 888774332 22444444422 2445566666666666432111111111 122445555666677
Q ss_pred hHHHHhhhh
Q 048140 261 PEERLCGLK 269 (334)
Q Consensus 261 P~er~~aL~ 269 (334)
|+-|..++.
T Consensus 152 ~~v~~~a~~ 160 (210)
T 4db6_A 152 EQILQEALW 160 (210)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
No 10
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A
Probab=32.43 E-value=93 Score=30.16 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhc-----CchhHHHHHHHhccCChHHHHhhhhhhc-----CCCcccc-ccCc-------
Q 048140 222 MKEEVKDILYHLYMTARGNLQRL-----MPKEVRILKYLLTIEDPEERLCGLKDAF-----TPGEEIE-GKDV------- 283 (334)
Q Consensus 222 ~k~EvKDIm~hLY~~ak~~l~r~-----~PkEvrilkyLL~IeDP~er~~aL~~AF-----tPG~e~e-~~d~------- 283 (334)
+-+|+......-|.+.|..+... +-.|-- +--++++..+|+.++.+|+ +||+++. .=|.
T Consensus 184 ~~~~a~~~~~~g~~~lK~~lk~kg~~~kvG~~gg---~~~~~~~d~~~l~avreav~~agy~pG~dv~L~vDaaas~~~~ 260 (444)
T 1w6t_A 184 TFKEALRYGAEIFHALKKILKSRGLETAVGDEGG---FAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFYD 260 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSC---BCCCCSSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGGBC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCC---CCCchHhHHHHHHHHHHHHHHhccCCCCCcEEEEEccchhccc
Confidence 34566666666677776544321 000000 0015566789999999998 8888765 2222
Q ss_pred --cccc------------CChHHHHHHHHHHHHHhhh
Q 048140 284 --DTLY------------TTPEMLHALMKTLVDAYNF 306 (334)
Q Consensus 284 --d~Ly------------ttP~~L~~~i~~ilday~~ 306 (334)
+.-| -||++...+++.+.+.|..
T Consensus 261 ~~n~~y~~~~n~~~~~~~~t~~eai~~~~~l~~~~~i 297 (444)
T 1w6t_A 261 KERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPI 297 (444)
T ss_dssp --CCCEETHHHHCTTCCEECHHHHHHHHHHHHHHSCE
T ss_pred ccCCceeeccccCcccCCCCHHHHHHHHHHHHHhCCc
Confidence 3333 3789999999999887753
No 11
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=32.07 E-value=47 Score=30.07 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=36.7
Q ss_pred cchhhhhhhhhh--hHHHh---HHh-hhhccCHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHcCC-chhhHHHhhhcc
Q 048140 46 VFSKEWNNLRSN--FFKRC---QDR-ADAEVDPEMKHKLLRLGRKLKEIDEDVQSHNELLEVIEAAP-SEVSQIVSRRCK 118 (334)
Q Consensus 46 afs~eW~~~R~~--ff~Rc---~~r-A~~e~Dp~~k~kl~~L~Rklk~ide~~~~hneLLe~i~~~p-~eie~iVArrRk 118 (334)
.|.+.|.+++.. +|+|. +.+ =+..++|.. |+++.|-|.|- ..+.+++ ...=..+.+.-|
T Consensus 8 ~~~~~w~~fk~~~~~~~~~~~~k~~~~~es~np~i--------~~~r~itd~v~------~~f~~te~a~~l~~Ik~~DP 73 (222)
T 3qk9_A 8 SFGKKVEDFKEKTVVGRSIQSLKNKLWDESENPLI--------VVMRKITNKVG------GFFAETESSRVYSQFKLMDP 73 (222)
T ss_dssp -------------------CHHHHHHHHHCCCHHH--------HHHHHHCC---------------CCHHHHTTCC----
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHhhhcccccCHHH--------HHHHHHHHhcc------cccCCCHHHHHHHHHHHhCC
Confidence 478899999865 44444 456 666777743 55566666552 2355666 344555667788
Q ss_pred CCChHHHHH------HHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 048140 119 DFTQEFFEH------LHTVAESYYNDPAKQDDIAKLGKLCVAAV 156 (334)
Q Consensus 119 dFT~eFF~h------L~~~~ea~~d~~dr~~~La~L~~~claav 156 (334)
.|+.+-|.- +.-+++|| -+-.++.|...|-.++
T Consensus 74 sF~~~~Fl~~a~~ai~p~Il~Af-----~~GD~~~Lk~llse~~ 112 (222)
T 3qk9_A 74 TFSNESFTRHLREYIVPEILEAY-----VKGDVKVLKKWFSEAP 112 (222)
T ss_dssp -CCHHHHHHHHHHTHHHHHHHHH-----HHTCHHHHHHHBCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHhhcCHHH
Confidence 999988842 44577777 3444555666665554
No 12
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.90 E-value=2.4e+02 Score=27.19 Aligned_cols=133 Identities=11% Similarity=0.214 Sum_probs=79.0
Q ss_pred chhhhhhhhhhhHHHhHHhhhhccCHHHHH--HHHHHHHHh-------hh----------hcHHHHHHHHHHHHHHcCC-
Q 048140 47 FSKEWNNLRSNFFKRCQDRADAEVDPEMKH--KLLRLGRKL-------KE----------IDEDVQSHNELLEVIEAAP- 106 (334)
Q Consensus 47 fs~eW~~~R~~ff~Rc~~rA~~e~Dp~~k~--kl~~L~Rkl-------k~----------ide~~~~hneLLe~i~~~p- 106 (334)
..+.|..=..+||+=. +--+.-.+|.... +-.-|+.-+ +. -+-+++.+..|+.-+...+
T Consensus 193 ~~rdyk~A~~~F~eaf-~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl 271 (394)
T 3txn_A 193 DERDFKTAFSYFYEAF-EGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSL 271 (394)
T ss_dssp TTSCHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCH
T ss_pred hccCHHHHHHHHHHHH-hcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCH
Confidence 5788888888888742 2223333443222 111111111 11 2456777777888888777
Q ss_pred chhhHHHhhhccCCChHHH--HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhCCcc
Q 048140 107 SEVSQIVSRRCKDFTQEFF--EHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDIINSPS 184 (334)
Q Consensus 107 ~eie~iVArrRkdFT~eFF--~hL~~~~ea~~d~~dr~~~La~L~~~claaveAyD~a~~d~~~L~~A~~kf~dILnS~S 184 (334)
.+++.++..+++.|..+.| .|+..+.... + -..+...++.|.+.+=+ .| ...++- |
T Consensus 272 ~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I-----r-------~~~L~~i~~pYsrIsl~--~i-------A~~l~l-s 329 (394)
T 3txn_A 272 ADFQAALKEYKKELAEDVIVQAHLGTLYDTM-----L-------EQNLCRIIEPYSRVQVA--HV-------AESIQL-P 329 (394)
T ss_dssp HHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH-----H-------HHHHHHHHTTCSEEEHH--HH-------HHHHTC-C
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-----H-------HHHHHHHhHhhceeeHH--HH-------HHHHCc-C
Confidence 7889999999998888876 4555665555 1 12344456777654332 22 223343 5
Q ss_pred hHHHHHHHHHHHHhccCC
Q 048140 185 VDAACRKIDSLAEKNQLD 202 (334)
Q Consensus 185 ldaa~~KId~LAe~~eLD 202 (334)
.+++...|-.|...|.|+
T Consensus 330 ~~evE~~L~~lI~dg~I~ 347 (394)
T 3txn_A 330 MPQVEKKLSQMILDKKFS 347 (394)
T ss_dssp HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHCCCee
Confidence 777777888888877764
No 13
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=29.70 E-value=1.3e+02 Score=26.43 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHHHHHHcCCchhhHHHhhhccCCChHHHHHHHHHHHHh
Q 048140 76 HKLLRLGRKLKEIDEDVQSHNELLEVIEAAPSEVSQIVSRRCKDFTQEFFEHLHTVAESY 135 (334)
Q Consensus 76 ~kl~~L~Rklk~ide~~~~hneLLe~i~~~p~eie~iVArrRkdFT~eFF~hL~~~~ea~ 135 (334)
.+++.++-+-|+=+..- ...||.-+.+.=++|..+=.. ....+||.||..+.|+.
T Consensus 42 r~~L~~as~~kKP~~~~--~~~lL~pl~~~i~~i~~~re~---nR~s~~fNHLsavsEgi 96 (176)
T 1s0p_A 42 KALINTASQSKKPSQET--LLELIKPLNNFAAEVGKIRDS---NRSSKFFNNLSAISESI 96 (176)
T ss_dssp HHHHHHHHHEECCCHHH--HHHHTHHHHHHHHHHHHHHHT---CTTCTTHHHHHHHHTSG
T ss_pred HHHHHHHHhcCCCCchh--HHHHHHHHHHHHHHHHHHHHc---cCCCchhhHHHHHHHhh
Confidence 35666666666665322 334555444433344444444 44568999999999987
No 14
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.49 E-value=1.5e+02 Score=23.98 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=41.2
Q ss_pred HHHHhhhhhCCcchHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhch--hhhHHHHHHHHHHHH
Q 048140 172 AELKFQDIINSPSVDAACRKIDSLAEKNQLDSALVLMITKAWSAAKESN--MMKEEVKDILYHLYM 235 (334)
Q Consensus 172 A~~kf~dILnS~Sldaa~~KId~LAe~~eLDsaLvLli~kA~aAAKeS~--~~k~EvKDIm~hLY~ 235 (334)
...-++.-++|.++++|++.|.+|..- -+-+. ++.+++..|=|.+ ...+.+-..+.||+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f~~e---~V~~~i~~alE~~~~~~~e~~~~LL~~L~~ 71 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHE---LVYEAIVMVLESTGESAFKMILDLLKSLWK 71 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHH---HHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-ccHHH---HHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 344566777889999999999999632 34343 4456777776753 456677777777774
No 15
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.35 E-value=1.4e+02 Score=25.01 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=41.8
Q ss_pred HHHHhhhhhCCcchHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHH
Q 048140 172 AELKFQDIINSPSVDAACRKIDSLAEKNQLDSALVLMITKAWSAAKES--NMMKEEVKDILYHLYM 235 (334)
Q Consensus 172 A~~kf~dILnS~Sldaa~~KId~LAe~~eLDsaLvLli~kA~aAAKeS--~~~k~EvKDIm~hLY~ 235 (334)
...-++.-++|.++++|++.|.+|..- .+-+.+ +.+++..|=|. +...+.+-..+.||+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~---V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHEL---VYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHH---HHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHH---HHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 344566777889999999999999632 444444 45667777664 4556778888888874
No 16
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP: a.286.1.1
Probab=27.65 E-value=88 Score=27.14 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCC-chhhHHHhhhccCCChHHHHHH
Q 048140 95 HNELLEVIEAAP-SEVSQIVSRRCKDFTQEFFEHL 128 (334)
Q Consensus 95 hneLLe~i~~~p-~eie~iVArrRkdFT~eFF~hL 128 (334)
|||||+.-.+.- .-|++.=+.-|.=++.+=|.-+
T Consensus 42 ~~elled~e~~f~~aWdaLPaSAqnlld~eqFHgf 76 (145)
T 2pv4_A 42 CDELLADRDGRFTRAWDQLPDSASSLFERCVFHGF 76 (145)
T ss_dssp HHHHHHTTTCHHHHHHHHSCHHHHTSSCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHhCcHHHHhcccHHHhHHH
Confidence 566665443332 6889999999999999877665
No 17
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=25.46 E-value=3.1e+02 Score=23.85 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhc------c-CCHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH---hhhhhcC-chhHHHHHH
Q 048140 186 DAACRKIDSLAEKN------Q-LDSALVLMITKAWSAAKESNMMKEEVKDILYHLYMTAR---GNLQRLM-PKEVRILKY 254 (334)
Q Consensus 186 daa~~KId~LAe~~------e-LDsaLvLli~kA~aAAKeS~~~k~EvKDIm~hLY~~ak---~~l~r~~-PkEvrilky 254 (334)
++++..++.+++.= - |+ .++--+-.++... +.+++.++-..+..+..+++ ..|...+ |.=+..|..
T Consensus 122 ~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~ 198 (249)
T 2qk1_A 122 EAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHK--TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198 (249)
T ss_dssp HHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Confidence 77788888888853 1 22 3444444555332 67899999999999999888 5677777 788888888
Q ss_pred HhccCChHHHHhhhh
Q 048140 255 LLTIEDPEERLCGLK 269 (334)
Q Consensus 255 LL~IeDP~er~~aL~ 269 (334)
+|+=.||+=|-.+..
T Consensus 199 ~l~D~~~~VR~aA~~ 213 (249)
T 2qk1_A 199 IVNDTQPAIRTIGFE 213 (249)
T ss_dssp HHTCSSHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHH
Confidence 998888887766543
No 18
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=25.26 E-value=1.6e+02 Score=28.83 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhc------------CchhHHHHHHHhccCChHHH----Hhhhhhh-cCCCcccc-ccCc--
Q 048140 224 EEVKDILYHLYMTARGNLQRL------------MPKEVRILKYLLTIEDPEER----LCGLKDA-FTPGEEIE-GKDV-- 283 (334)
Q Consensus 224 ~EvKDIm~hLY~~ak~~l~r~------------~PkEvrilkyLL~IeDP~er----~~aL~~A-FtPG~e~e-~~d~-- 283 (334)
.|+......-|.+.|--+... .| ++.+++++ ..++++| |+||+++. +=|.
T Consensus 178 ~ea~~~~~egy~~lK~~l~~~g~~t~vGdegg~ap----------~~~~~~e~l~~i~~Air~agy~~G~dv~l~vD~aa 247 (428)
T 3tqp_A 178 AEALRYGAEVFHALKKRLVSRGLMSAVGDEGGFAP----------DLPNNEAAFELILEAIEDANYVPGKDIYLALDAAS 247 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCC----------CCSSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCG
T ss_pred HHHHHHHHHHHHhHhhhhcccccccccCCCCCcCC----------CcccHHHHHHHHHHHHHHhhcccCCceEEEEecch
Confidence 355555566677766554321 23 24456777 6788888 99999876 2233
Q ss_pred -----ccc------cCChHHHHHHHHHHHHHhhh
Q 048140 284 -----DTL------YTTPEMLHALMKTLVDAYNF 306 (334)
Q Consensus 284 -----d~L------yttP~~L~~~i~~ilday~~ 306 (334)
+.- .-||+++...++.+++.|..
T Consensus 248 se~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i 281 (428)
T 3tqp_A 248 SELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPV 281 (428)
T ss_dssp GGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCE
T ss_pred hhhccCCceeccccccCHHHHHHHHHHHHhhccc
Confidence 111 24799999999999998864
No 19
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=24.95 E-value=87 Score=24.86 Aligned_cols=36 Identities=14% Similarity=0.369 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 048140 127 HLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTES 165 (334)
Q Consensus 127 hL~~~~ea~~d~~dr~~~La~L~~~claaveAyD~a~~d 165 (334)
+|..+++-| -.++++|..|...|..|+..||.+.+.
T Consensus 50 kL~~li~ky---sqKk~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 50 QVTRMLGKY---AKEKEDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 468999999999999999999998875
No 20
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=24.29 E-value=1.9e+02 Score=23.24 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=16.3
Q ss_pred hhCCcchHHHHHHHHHHHHhcc
Q 048140 179 IINSPSVDAACRKIDSLAEKNQ 200 (334)
Q Consensus 179 ILnS~Sldaa~~KId~LAe~~e 200 (334)
++-.|.+..+|..|...++.|.
T Consensus 74 ~~Ga~~L~~~c~~LE~~~r~g~ 95 (123)
T 3iqt_A 74 YSGVPRMKNLCQLIEQQLRSGT 95 (123)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTC
T ss_pred HcCHHHHHHHHHHHHHHHHcCC
Confidence 4556667888888888888775
No 21
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=23.75 E-value=2.5e+02 Score=21.56 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHcCCchhhHHHhhhccCCChHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 048140 90 EDVQSHNELLEVIEAAPSEVSQIVSRRCKDFTQEFFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEAL 169 (334)
Q Consensus 90 e~~~~hneLLe~i~~~p~eie~iVArrRkdFT~eFF~hL~~~~ea~~d~~dr~~~La~L~~~claaveAyD~a~~d~~~L 169 (334)
|++.++..-|+.|..+|.-...+-.=.++.|..|-. .+..+|+.|-....+....
T Consensus 2 ~~~~~w~~sl~~iL~~~~g~~~F~~Fl~~e~~~enl-------------------------~Fw~~ve~~k~~~~~~~~~ 56 (127)
T 2oj4_A 2 EEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENL-------------------------EFWLACEDFKKVKSQSKMA 56 (127)
T ss_dssp THHHHHTTCHHHHHTCHHHHHHHHHHHHHTTCHHHH-------------------------HHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHhHHHHHHCCHHHHHHHHHHHHHcCCHHHH-------------------------HHHHHHHHHhcCCCHHHHH
Confidence 567777777888888876655554444445544421 2334455555543334456
Q ss_pred HHHHHHhhhhhCCcch
Q 048140 170 NAAELKFQDIINSPSV 185 (334)
Q Consensus 170 ~~A~~kf~dILnS~Sl 185 (334)
..|..-++.-|.++|.
T Consensus 57 ~~a~~I~~~yi~~~s~ 72 (127)
T 2oj4_A 57 SKAKKIFAEYIAIQAC 72 (127)
T ss_dssp HHHHHHHHHHTSTTCT
T ss_pred HHHHHHHHHHccCCCC
Confidence 7788888888877653
No 22
>2fu2_A Hypothetical protein SPY2152; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.15A {Streptococcus pyogenes}
Probab=22.12 E-value=1.9e+02 Score=22.77 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhhhhh---cCchhHHHHHHHhccCChHHH-----Hhhhhhhc
Q 048140 201 LDSALVLMITKAWSAAKESNMMKEEVKDILYHLYMTARGNLQR---LMPKEVRILKYLLTIEDPEER-----LCGLKDAF 272 (334)
Q Consensus 201 LDsaLvLli~kA~aAAKeS~~~k~EvKDIm~hLY~~ak~~l~r---~~PkEvrilkyLL~IeDP~er-----~~aL~~AF 272 (334)
.|+.|.-+|-.|. ++-+. +..+-=|.++|+.-.-..+.. +.|+++--|+..+.=..-..| ...|...|
T Consensus 22 ~~~~L~~~il~aa---~~L~k-~~n~~~va~kL~~~i~~Yll~h~~~~P~sl~~L~~~i~k~~~kyrg~~~~~~~l~~~f 97 (102)
T 2fu2_A 22 ADDYFRQAIFELA---SQLEK-EGMSSLLATKIDSLINQYILTHQFDAPKSIFDLSRLVKTKASHYKGTAISAIMLGSFL 97 (102)
T ss_dssp TCHHHHHHHHHHH---HHHHH-HCCCHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHC------------------
T ss_pred cCHHHHHHHHHHH---HHhhc-CCCHHHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777777665544 33322 224556889999999999988 599999888777654433333 23467778
Q ss_pred CCCc
Q 048140 273 TPGE 276 (334)
Q Consensus 273 tPG~ 276 (334)
+-||
T Consensus 98 ~~~~ 101 (102)
T 2fu2_A 98 SGGP 101 (102)
T ss_dssp ----
T ss_pred ccCC
Confidence 7776
No 23
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=22.10 E-value=92 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHhhhhhCCcchH---HHHHHHHHHHHh
Q 048140 174 LKFQDIINSPSVD---AACRKIDSLAEK 198 (334)
Q Consensus 174 ~kf~dILnS~Sld---aa~~KId~LAe~ 198 (334)
..|+.||.|.+++ +|.+-|++|+..
T Consensus 11 k~L~~Ll~s~~P~Dlq~AN~LiK~mv~e 38 (45)
T 1j2j_B 11 KMLARLLKSSHPEDLRAANKLIKEMVQE 38 (45)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHHhhH
Confidence 4789999999976 899999999865
No 24
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=21.95 E-value=1.4e+02 Score=25.76 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhh
Q 048140 128 LHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDII 180 (334)
Q Consensus 128 L~~~~ea~~d~~dr~~~La~L~~~claaveAyD~a~~d~~~L~~A~~kf~dIL 180 (334)
|+.++.+. -+++|.++..|++.+...++.-|.+..... .-.|+..|++..
T Consensus 89 l~~li~sl--p~~~kk~l~~La~~Lf~~le~LD~AAr~kd-~~~a~~~Y~~t~ 138 (149)
T 1vyk_A 89 LKTVISAK--PKDEKKSLQELTSKLFSSIDNLDHAAKIKS-PTEAEKYYGQTV 138 (149)
T ss_dssp HHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 55666666 488999999999999999999999887643 555555555543
No 25
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=21.88 E-value=2e+02 Score=23.30 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=36.8
Q ss_pred HHhhhhccCHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHcCCchhhHHHh
Q 048140 63 QDRADAEVDPEMKHKLLRLGRKLKEIDEDVQSHNELLEVIEAAPSEVSQIVS 114 (334)
Q Consensus 63 ~~rA~~e~Dp~~k~kl~~L~Rklk~ide~~~~hneLLe~i~~~p~eie~iVA 114 (334)
..+|+...||..|.-|... .+||.....++|+.++..+.++.....
T Consensus 38 ~q~a~~~~d~~~k~vl~~i------~~EEkeH~g~~lelLrr~Dp~~~~~l~ 83 (95)
T 3k6c_A 38 NQRVNACKDKELKAILAHN------RDEEKEHAAMLLEWIRRCDPAFDKELK 83 (95)
T ss_dssp HHHHHHCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5689999999998876554 478999999999999988777665544
No 26
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.75 E-value=2.5e+02 Score=24.78 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred HHHhhhhhCCcch---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhch----hhhHH----------HHHHHHHHHH
Q 048140 173 ELKFQDIINSPSV---DAACRKIDSLAEKNQLDSALVLMITKAWSAAKESN----MMKEE----------VKDILYHLYM 235 (334)
Q Consensus 173 ~~kf~dILnS~Sl---daa~~KId~LAe~~eLDsaLvLli~kA~aAAKeS~----~~k~E----------vKDIm~hLY~ 235 (334)
..+|+.+|.|.++ .+|.+=|+.||...+=.+.-+.-....+..++.+. .|=+. =.++|--||.
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~ 114 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 114 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHH
Confidence 4689999999885 59999999999654433333222222232222221 11111 1467777886
Q ss_pred HHHh---hhhhcCchh---HHHHHHHhccCChHHHHhhhhhhcCCCccc
Q 048140 236 TARG---NLQRLMPKE---VRILKYLLTIEDPEERLCGLKDAFTPGEEI 278 (334)
Q Consensus 236 ~ak~---~l~r~~PkE---vrilkyLL~IeDP~er~~aL~~AFtPG~e~ 278 (334)
+-+. .+.++..-. -..|--||.+.|.-.+.=.--++|..|...
T Consensus 115 ~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~ 163 (186)
T 1oxz_A 115 RCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEV 163 (186)
T ss_dssp HHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHHHCC-
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC
Confidence 6543 333333221 134455555555554444444444444443
No 27
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=21.52 E-value=1.9e+02 Score=26.32 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhCCcchHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhhhchhhhHHHHHHHHHH-HHHHHhhhhh
Q 048140 169 LNAAELKFQDIINSPSVDAACRKIDSLAEKNQL----DSALVLMITKAWSAAKESNMMKEEVKDILYHL-YMTARGNLQR 243 (334)
Q Consensus 169 L~~A~~kf~dILnS~Sldaa~~KId~LAe~~eL----DsaLvLli~kA~aAAKeS~~~k~EvKDIm~hL-Y~~ak~~l~r 243 (334)
...|..+.-++||+-.+-.-..||..|.+..|| ||+|+--+=.-+-+=... ..-||+--.... +.+.+. --.
T Consensus 10 ~~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~--~~~~vrk~~~~Fi~e~~~~-k~~ 86 (257)
T 3gs3_A 10 TATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHD--SNMEVRKQVVAFVEQVCKV-KVE 86 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGC--SCHHHHHHHHHHHHHHHHH-CGG
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHHH-HHH
Confidence 445555555555555442124688888888874 666543322222221111 112444333333 333333 345
Q ss_pred cCchhHHHHHHHhccCChHHHHhhh
Q 048140 244 LMPKEVRILKYLLTIEDPEERLCGL 268 (334)
Q Consensus 244 ~~PkEvrilkyLL~IeDP~er~~aL 268 (334)
..|+=+-.|.+||+-+||.=-..+.
T Consensus 87 l~~~~l~~L~~Ll~d~d~~V~K~~I 111 (257)
T 3gs3_A 87 LLPHVINVVSMLLRDNSAQVIKRVI 111 (257)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7888899999999988887554443
No 28
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=21.34 E-value=28 Score=22.05 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=13.5
Q ss_pred hhhhhhhhhhHHHhHHhh
Q 048140 49 KEWNNLRSNFFKRCQDRA 66 (334)
Q Consensus 49 ~eW~~~R~~ff~Rc~~rA 66 (334)
.-|+.+|.+||+--.-||
T Consensus 5 nfwsslrkgfydgeagra 22 (26)
T 2khf_A 5 NFWSSLRKGFYDGEAGRA 22 (26)
T ss_dssp HHHHHHHHHHTTTHHHHT
T ss_pred HHHHHHHhhcccchhhhH
Confidence 459999999997654444
No 29
>3fcn_A AN alpha-helical protein of unknown function (PFA; DUF29 family protein, structural genomics; HET: MSE; 1.45A {Rhodospirillum rubrum atcc 11170}
Probab=20.95 E-value=3.7e+02 Score=23.38 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 048140 166 IEALNAAELKFQDIINSPSVDAACRKIDSLAEKNQLDSALVLMITKAWSAAKES 219 (334)
Q Consensus 166 ~~~L~~A~~kf~dILnS~Sldaa~~KId~LAe~~eLDsaLvLli~kA~aAAKeS 219 (334)
...|......+.++| |||+.. .|+ +.++|..|...
T Consensus 85 ~~tI~~~R~~I~~~L-sPSLk~------------yl~------l~~~Y~~A~~~ 119 (164)
T 3fcn_A 85 RSEVVSWHNLLLDTI-TPGMID------------RID------IGVIWRRAVSE 119 (164)
T ss_dssp HHHHHHHHHHHHHHC-CGGGGG------------GCC------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hHhhhh------------hhh------HHHHHHHHHHH
Confidence 345778888899999 999877 333 78899888654
No 30
>1huw_A Human growth hormone; 2.00A {Homo sapiens} SCOP: a.26.1.1 PDB: 1kf9_A 1hwg_A 3hhr_A 1a22_A 1bp3_A 1hwh_A 1axi_A 1hgu_A 1z7c_A
Probab=20.71 E-value=91 Score=27.42 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=35.4
Q ss_pred cccCChHHHHHHHHHHHHHhhhccccchHHH-HHhhc--CHH--HHHHHHHHhh
Q 048140 285 TLYTTPEMLHALMKTLVDAYNFSREGSLLKE-AKDMM--NPN--MIEKIEELRK 333 (334)
Q Consensus 285 ~LyttP~~L~~~i~~ilday~~~~~~tl~~e-A~~l~--~P~--vi~rl~~lk~ 333 (334)
+.=+++++|++|+-.+|.++..- =-.+..+ +..++ .|. |++|++.|++
T Consensus 67 aqq~s~~~LL~~~l~Ll~SW~~P-L~~L~~~l~~~~~~~~~~~~i~~k~k~Lee 119 (191)
T 1huw_A 67 TQQKSNLELLRISLLLIQSWLEP-VQFLRSVFANSLVYGASDSNVYDLLKDLEE 119 (191)
T ss_dssp HHTSCHHHHHHHHHHHHHTTTTG-GGGGHHHHHHCCSTTTTTCCHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccccCCChHHHHHHHHHHHH
Confidence 55678899999999999998544 3455566 56655 564 8888888764
No 31
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=20.20 E-value=2.3e+02 Score=24.68 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHHcCCchhhHHHhhhccCCChHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 048140 89 DEDVQSHNELLEVIEAAPSEVSQIVSRRCKDFTQEFFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEA 168 (334)
Q Consensus 89 de~~~~hneLLe~i~~~p~eie~iVArrRkdFT~eFF~hL~~~~ea~~d~~dr~~~La~L~~~claaveAyD~a~~d~~~ 168 (334)
-+++.+++.-|+.|..+|.-...+-.=.+.+|..|-. .+..+||.|-....+.+.
T Consensus 53 ~~~~~~w~~sle~IL~dp~g~~~F~~FL~~e~s~EnL-------------------------~Fw~ave~yk~~~~~~~~ 107 (205)
T 1agr_E 53 QEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENI-------------------------DFWISCEEYKKIKSPSKL 107 (205)
T ss_dssp HHHHHHHTTCHHHHHHSHHHHHHHHHHHHHTTCTHHH-------------------------HHHHHHHHHHHCCCTTTH
T ss_pred HHHHHHHHhhHHHHhcCHHHHHHHHHHHHHcCCHHHH-------------------------HHHHHHHHHhccCCHHHH
Confidence 4567777777777777765555444433444433321 233355555554433345
Q ss_pred HHHHHHHhhhhhCCcch
Q 048140 169 LNAAELKFQDIINSPSV 185 (334)
Q Consensus 169 L~~A~~kf~dILnS~Sl 185 (334)
...|..-|+.-|..+|.
T Consensus 108 ~~~A~~Iy~~YI~~~Sp 124 (205)
T 1agr_E 108 SPKAKKIYNEFISVQAT 124 (205)
T ss_dssp HHHHHHHHHHHTSTTCT
T ss_pred HHHHHHHHHHHCCCCCc
Confidence 67788888888887764
Done!