Query 048140
Match_columns 334
No_of_seqs 44 out of 46
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 11:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048140.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048140hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s0pa_ a.192.1.1 (A:) N-termi 42.7 29 0.0021 28.6 6.9 55 76-135 42-96 (176)
2 d1hcia4 a.7.1.1 (A:633-746) al 41.1 37 0.0027 24.2 6.6 87 53-157 5-100 (114)
3 d1af7a1 a.58.1.1 (A:11-91) Che 35.4 17 0.0012 25.3 3.7 62 48-114 14-77 (81)
4 d2ffja1 e.50.1.1 (A:7-288) Hyp 34.3 28 0.0021 30.0 5.8 66 208-273 5-80 (282)
5 d3bzka3 a.294.1.1 (A:1-324) Tr 28.7 45 0.0033 29.0 6.2 30 192-229 78-107 (324)
6 d1j2jb_ a.7.8.1 (B:) ADP-ribos 28.5 18 0.0013 23.8 2.6 27 174-200 9-38 (41)
7 d1wy6a1 a.118.20.1 (A:7-167) H 26.8 17 0.0012 29.9 2.7 119 88-222 14-142 (161)
8 d2at2a1 c.78.1.1 (A:1-144) Asp 26.1 6.6 0.00048 30.9 -0.0 39 252-290 1-46 (144)
9 d1mmsa1 a.4.7.1 (A:71-140) Rib 25.5 29 0.0021 24.7 3.5 27 168-195 35-61 (70)
10 d1nzea_ a.24.18.1 (A:) Oxygen- 25.4 35 0.0026 25.8 4.2 50 128-180 52-101 (112)
11 d3dxoa1 d.17.4.19 (A:1-117) Un 25.4 14 0.001 26.5 1.8 49 256-306 15-63 (117)
12 d1hc8a_ a.4.7.1 (A:) Ribosomal 24.7 26 0.0019 25.2 3.1 28 168-196 39-66 (74)
13 d2cbia1 a.246.1.1 (A:496-624) 24.7 1.4E+02 0.01 22.8 11.9 102 69-183 1-106 (129)
14 d1zpya1 a.25.1.5 (A:4-94) Hypo 21.5 97 0.007 23.1 6.0 43 63-111 35-77 (91)
15 d1sgma2 a.121.1.1 (A:78-188) P 20.4 1E+02 0.0074 21.2 5.8 40 141-180 71-110 (111)
No 1
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=42.73 E-value=29 Score=28.62 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHHHHHHcCCchhhHHHhhhccCCChHHHHHHHHHHHHh
Q 048140 76 HKLLRLGRKLKEIDEDVQSHNELLEVIEAAPSEVSQIVSRRCKDFTQEFFEHLHTVAESY 135 (334)
Q Consensus 76 ~kl~~L~Rklk~ide~~~~hneLLe~i~~~p~eie~iVArrRkdFT~eFF~hL~~~~ea~ 135 (334)
..++.++-+-|+=|. ....+||.-+.+.=++|..+=..+| +.+||.||..++|+.
T Consensus 42 r~~L~~a~~~kKP~~--~~~~~ll~pl~~~i~~i~~~re~nR---~s~~fNHLsavsEgi 96 (176)
T d1s0pa_ 42 KALINTASQSKKPSQ--ETLLELIKPLNNFAAEVGKIRDSNR---SSKFFNNLSAISESI 96 (176)
T ss_dssp HHHHHHHHHEECCCH--HHHHHHTHHHHHHHHHHHHHHHTCT---TCTTHHHHHHHHTSG
T ss_pred HHHHHHHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHHHhcC---CCchhHHHHHHHHhc
Confidence 456666666666653 3344555444444344445544555 557999999999987
No 2
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.07 E-value=37 Score=24.17 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=51.3
Q ss_pred hhhhhhHHHhHHhh---------hhccCHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHcCCchhhHHHhhhccCCChH
Q 048140 53 NLRSNFFKRCQDRA---------DAEVDPEMKHKLLRLGRKLKEIDEDVQSHNELLEVIEAAPSEVSQIVSRRCKDFTQE 123 (334)
Q Consensus 53 ~~R~~ff~Rc~~rA---------~~e~Dp~~k~kl~~L~Rklk~ide~~~~hneLLe~i~~~p~eie~iVArrRkdFT~e 123 (334)
.+|..|+..|.+-- -+..++..-..+-.+.++.+.+..+|..|..-++.|.+...++-. . .-|..+
T Consensus 5 ~L~~~F~~~a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~---~--~~~~~~ 79 (114)
T d1hcia4 5 RLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQE---A--LVFDNK 79 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T--TCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---c--CCchHH
Confidence 45666776665521 112222223346668888999999999999988888876665533 1 122222
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 048140 124 FFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQ 157 (334)
Q Consensus 124 FF~hL~~~~ea~~d~~dr~~~La~L~~~claave 157 (334)
.-..+.++|...+..+.+.+.
T Consensus 80 -------------~i~~~~~~L~~~W~~L~~~~~ 100 (114)
T d1hcia4 80 -------------HTNYTMEHIRVGWELLLTTIA 100 (114)
T ss_dssp -------------TCSCHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHH
Confidence 223456666666666666553
No 3
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=35.36 E-value=17 Score=25.31 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=42.4
Q ss_pred hhhhhhhhhhhHHHhHHhhhhccCHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHcCC--chhhHHHh
Q 048140 48 SKEWNNLRSNFFKRCQDRADAEVDPEMKHKLLRLGRKLKEIDEDVQSHNELLEVIEAAP--SEVSQIVS 114 (334)
Q Consensus 48 s~eW~~~R~~ff~Rc~~rA~~e~Dp~~k~kl~~L~Rklk~ide~~~~hneLLe~i~~~p--~eie~iVA 114 (334)
.+++..++.-++++|--.-+..-..-.+.+|.+..+.+. +.-+++.+..++.+| .++..+|.
T Consensus 14 d~~f~~~~~~i~~~~Gi~l~~~K~~~l~~RL~~rm~~~g-----~~s~~~Y~~~L~~~~~~~e~~~li~ 77 (81)
T d1af7a1 14 DAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALG-----LDDFGRYLSMLEANQNSAEWQAFIN 77 (81)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 467888888899888887777777777777666666654 334555555556555 46776664
No 4
>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=34.32 E-value=28 Score=30.02 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhhhhh-cCchhH-----HHHHHHhccCChH----HHHhhhhhhcC
Q 048140 208 MITKAWSAAKESNMMKEEVKDILYHLYMTARGNLQR-LMPKEV-----RILKYLLTIEDPE----ERLCGLKDAFT 273 (334)
Q Consensus 208 li~kA~aAAKeS~~~k~EvKDIm~hLY~~ak~~l~r-~~PkEv-----rilkyLL~IeDP~----er~~aL~~AFt 273 (334)
+++++...++-++.-.+..+.++.+........+.. ..|+.+ |+++-++..+||= ++.+..+-.+-
T Consensus 5 ~~~q~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~i~~~i~~~~g~~DPy~~~K~~~n~~Al~~~ 80 (282)
T d2ffja1 5 LLGRVYYEAKLVTDDEDLISQCVDESLKILAENYSSRPINAHLATRIHRRVYEILGVEDPYAEVKARANEVARQVL 80 (282)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTCSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 567888889998888889999999988888766655 566653 7788889999983 34444444443
No 5
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.72 E-value=45 Score=29.04 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=20.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhhchhhhHHHHHH
Q 048140 192 IDSLAEKNQLDSALVLMITKAWSAAKESNMMKEEVKDI 229 (334)
Q Consensus 192 Id~LAe~~eLDsaLvLli~kA~aAAKeS~~~k~EvKDI 229 (334)
|..+.+.|+|++.|.--|.. | .+.+|+.||
T Consensus 78 l~~i~~~~~Lt~~L~~~i~~----a----~t~~eLEdl 107 (324)
T d3bzka3 78 LASIEEQGKLTPELARDIKL----A----DTKTRLEDL 107 (324)
T ss_dssp HHHHHHTTCCCHHHHHHHHH----C----CSHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHc----C----CCHHHHHHH
Confidence 45677789999997655443 3 346788887
No 6
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.52 E-value=18 Score=23.80 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=21.5
Q ss_pred HHhhhhhCCcc---hHHHHHHHHHHHHhcc
Q 048140 174 LKFQDIINSPS---VDAACRKIDSLAEKNQ 200 (334)
Q Consensus 174 ~kf~dILnS~S---ldaa~~KId~LAe~~e 200 (334)
..|+.+|+|.. +.+|.+-|++|++.-|
T Consensus 9 klL~~LLkS~~PeDLqaANrLIK~mVkedq 38 (41)
T d1j2jb_ 9 KMLARLLKSSHPEDLRAANKLIKEMVQEDQ 38 (41)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 45788999987 6689999999987643
No 7
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=26.80 E-value=17 Score=29.89 Aligned_cols=119 Identities=16% Similarity=0.233 Sum_probs=59.0
Q ss_pred hcHHHHHHHHHHHHHHc-CC-ch----hhHHHhhhccCCChHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhh
Q 048140 88 IDEDVQSHNELLEVIEA-AP-SE----VSQIVSRRCKDFTQEFFEHLHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDT 161 (334)
Q Consensus 88 ide~~~~hneLLe~i~~-~p-~e----ie~iVArrRkdFT~eFF~hL~~~~ea~~d~~dr~~~La~L~~~claaveAyD~ 161 (334)
+|-.|++--+++.++-. ++ .| |+.+|.+--=+ --|+-|.. ++++.|...=++ +-.-|+-|=.
T Consensus 14 ldG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~---~v~~~Ld~-IG~~FDls~C~N--------lk~vv~C~~~ 81 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCR---YMFQVLDK-IGSYFDLDKCQN--------LKSVVECGVI 81 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHH---HHHHHHHH-HGGGSCGGGCSC--------THHHHHHHHH
T ss_pred HhhhHHhHHHHHHHHcccCCccccceeeeecccccchH---HHHHHHHH-HhhhcCchhhhc--------HHHHHHHHHH
Confidence 56677788888877763 33 33 24555432111 11222221 223322222111 1223333434
Q ss_pred hhhhHHHHHHHHHHhhhhhCCcchHHHHHHH-HHHHHhccCCHHHHHHHHHHHH---Hhhhchhh
Q 048140 162 TTESIEALNAAELKFQDIINSPSVDAACRKI-DSLAEKNQLDSALVLMITKAWS---AAKESNMM 222 (334)
Q Consensus 162 a~~d~~~L~~A~~kf~dILnS~Sldaa~~KI-d~LAe~~eLDsaLvLli~kA~a---AAKeS~~~ 222 (334)
+-.+.+-.+-|= |||.-...++.-++| .+|++.+|+.|++++-|..||. +.++|+..
T Consensus 82 ~n~~se~vdlAL----d~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nel 142 (161)
T d1wy6a1 82 NNTLNEHVNKAL----DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 142 (161)
T ss_dssp TTCCCHHHHHHH----HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcchHHHHHHHH----HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 444444444442 333333344444455 7789999999999999999986 45555544
No 8
>d2at2a1 c.78.1.1 (A:1-144) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}
Probab=26.15 E-value=6.6 Score=30.90 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=31.8
Q ss_pred HHHHhccCC--hHHHHhhhhhhcC-----CCccccccCcccccCCh
Q 048140 252 LKYLLTIED--PEERLCGLKDAFT-----PGEEIEGKDVDTLYTTP 290 (334)
Q Consensus 252 lkyLL~IeD--P~er~~aL~~AFt-----PG~e~e~~d~d~LyttP 290 (334)
+||||+|.| +++-...|..|.. ++..+.++..-.||..|
T Consensus 1 Mkh~l~i~dls~~el~~il~~A~~lk~~~~~~~l~gk~~~~lF~ep 46 (144)
T d2at2a1 1 MKHLTTMSELSTEEIKDLLQTAQELKSGKTDNQLTGKFAANLFFEP 46 (144)
T ss_pred CcCcCChhcCCHHHHHHHHHHHHHHHcCCCCccccCCeeeEEEecC
Confidence 479999998 7888888888865 67778888888888877
No 9
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.53 E-value=29 Score=24.68 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhhhCCcchHHHHHHHHHH
Q 048140 168 ALNAAELKFQDIINSPSVDAACRKIDSL 195 (334)
Q Consensus 168 ~L~~A~~kf~dILnS~Sldaa~~KId~L 195 (334)
..+=|+.|..| ||..|+++||+-|--=
T Consensus 35 v~eIAk~K~~d-l~~~~l~~a~k~v~Gt 61 (70)
T d1mmsa1 35 IEEIAKTKMPD-LNANSLEAAMKIIEGT 61 (70)
T ss_dssp HHHHHHHHGGG-CCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cCCCCHHHHHHHHHHh
Confidence 35668999999 8888999999987543
No 10
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=25.37 E-value=35 Score=25.78 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=35.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhh
Q 048140 128 LHTVAESYYNDPAKQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDII 180 (334)
Q Consensus 128 L~~~~ea~~d~~dr~~~La~L~~~claaveAyD~a~~d~~~L~~A~~kf~dIL 180 (334)
|+.++.+ -.++++.++.+|++.+...++.-|.+..... ...|+..|.+.+
T Consensus 52 l~~li~~--~~~~~k~~~~~la~~lf~~le~LD~Aar~kd-~~~a~~~Y~~t~ 101 (112)
T d1nzea_ 52 LKTVISA--KPKDEKKSLQELTSKLFSSIDNLDHAAKIKS-PTEAEKYYGQTV 101 (112)
T ss_dssp HHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHh--CCHhhhHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 4444444 3677888899999999999999998877643 455555555543
No 11
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=25.35 E-value=14 Score=26.46 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=40.3
Q ss_pred hccCChHHHHhhhhhhcCCCccccccCcccccCChHHHHHHHHHHHHHhhh
Q 048140 256 LTIEDPEERLCGLKDAFTPGEEIEGKDVDTLYTTPEMLHALMKTLVDAYNF 306 (334)
Q Consensus 256 L~IeDP~er~~aL~~AFtPG~e~e~~d~d~LyttP~~L~~~i~~ilday~~ 306 (334)
.|-.||+.|..+|...|+|.-... |+...+..++.+...+..+++++..
T Consensus 15 wn~~d~~~~~~~l~~~~a~d~~~~--dP~~~~~G~~ai~~~~~~~~~~~~~ 63 (117)
T d3dxoa1 15 WNEEDNERRRHLVGQAWAENTRYV--DPLMQGEGQQGIAAMIEAARQKFPG 63 (117)
T ss_dssp HHCSCHHHHHHHHHHHEEEEEEEE--CSSCEEEHHHHHHHHHHHHHHHSTT
T ss_pred HhccCchhhHHHHHHHccCCEEEE--CCCCCcccHHHHHHHHHHHHHhCCC
Confidence 355899999999999999987766 3444568899999999999998753
No 12
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.70 E-value=26 Score=25.23 Aligned_cols=28 Identities=43% Similarity=0.580 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhhhCCcchHHHHHHHHHHH
Q 048140 168 ALNAAELKFQDIINSPSVDAACRKIDSLA 196 (334)
Q Consensus 168 ~L~~A~~kf~dILnS~Sldaa~~KId~LA 196 (334)
..+-|+.|..| ||..|+++||+-|--=|
T Consensus 39 i~eIAk~K~~D-l~~~~l~~a~k~v~GtA 66 (74)
T d1hc8a_ 39 VREIAELKMPD-LNAASIEAAMRMIEGTA 66 (74)
T ss_dssp HHHHHHHSGGG-CCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-cCCCCHHHHHHHHHhhH
Confidence 35679999999 88889999999886544
No 13
>d2cbia1 a.246.1.1 (A:496-624) Hyaluronidase, post-catalytic domain 3 {Clostridium perfringens [TaxId: 1502]}
Probab=24.69 E-value=1.4e+02 Score=22.84 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=69.2
Q ss_pred ccCHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHcCCchhhHHHhhhccCCChHHHHHHHHHHHHhcCChhhHHHHHHH
Q 048140 69 EVDPEMKHKLLRLGRKLKEIDEDVQSHNELLEVIEAAPSEVSQIVSRRCKDFTQEFFEHLHTVAESYYNDPAKQDDIAKL 148 (334)
Q Consensus 69 e~Dp~~k~kl~~L~Rklk~ide~~~~hneLLe~i~~~p~eie~iVArrRkdFT~eFF~hL~~~~ea~~d~~dr~~~La~L 148 (334)
|+.|+.+.+|-.+-.|+.+=.+....+..|.++|. .|.....+.|...+.+-|+.+.--+.++ +.+.+=
T Consensus 1 eES~EL~~~l~~f~~kl~~G~~~~a~~~~L~~eF~----~i~~A~~~~r~~~~n~~l~ei~pWL~~~-------~~~g~A 69 (129)
T d2cbia1 1 EDAPELRAKMDELWNKLSSKEDASALIEELYGEFA----RMEEACNNLKANLPEVALEECSRQLDEL-------ITLAQG 69 (129)
T ss_dssp CSSHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH----HHHHHHHHHHHHSCHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH----HHHHHHHHHHhcCChhHHHHHHHHHHHH-------HHHHHH
Confidence 57899999999999999766555566777777775 3666667777777888887776666665 445555
Q ss_pred HHHHHHHHHHhhhhhhhHHH----HHHHHHHhhhhhCCc
Q 048140 149 GKLCVAAVQAYDTTTESIEA----LNAAELKFQDIINSP 183 (334)
Q Consensus 149 ~~~claaveAyD~a~~d~~~----L~~A~~kf~dILnS~ 183 (334)
|..-+.++.||..- |.++ --+|+..|+.+++++
T Consensus 70 ~~~~l~~~~A~~~g--D~~a~w~~~s~~q~~~~~~~~~~ 106 (129)
T d2cbia1 70 DKASLDMIVAQLNE--DTEAYESAKEIAQNKLNTALSSF 106 (129)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHhccc
Confidence 55666666666442 3222 345667777777665
No 14
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]}
Probab=21.51 E-value=97 Score=23.06 Aligned_cols=43 Identities=28% Similarity=0.306 Sum_probs=34.6
Q ss_pred HHhhhhccCHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHcCCchhhH
Q 048140 63 QDRADAEVDPEMKHKLLRLGRKLKEIDEDVQSHNELLEVIEAAPSEVSQ 111 (334)
Q Consensus 63 ~~rA~~e~Dp~~k~kl~~L~Rklk~ide~~~~hneLLe~i~~~p~eie~ 111 (334)
+.+|+...||..|.=|.-.+ |||...+.++|+.++..+.++..
T Consensus 35 ~q~a~~t~d~~~k~Vl~hia------~EEkeH~g~~LelLrr~Dp~~~~ 77 (91)
T d1zpya1 35 NQRVNACKDKELKAILAHNR------DEEKEHAAMLLEWIRRCDPAFDK 77 (91)
T ss_dssp HHHHHHCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCHHHHH
Confidence 57899999999988765543 78999999999999977655543
No 15
>d1sgma2 a.121.1.1 (A:78-188) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=20.40 E-value=1e+02 Score=21.18 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhh
Q 048140 141 KQDDIAKLGKLCVAAVQAYDTTTESIEALNAAELKFQDII 180 (334)
Q Consensus 141 r~~~La~L~~~claaveAyD~a~~d~~~L~~A~~kf~dIL 180 (334)
.-++||..--..+.+.-..-++..|.+.++.+...+..+|
T Consensus 71 ~~~~lA~~l~~~~~Ga~~~ar~~~d~~~l~~~~~~l~~Ll 110 (111)
T d1sgma2 71 EANQLGTLINSMIEGGIMLSLTNKDKTPLLLIAEQIPVLV 110 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHTTHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 3445666656666666677788888888888777766655
Done!