BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048141
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IIR|A Chain A, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
pdb|3IIR|B Chain B, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
Length = 190
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 57 PVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVI-LHPNISNH 115
P+ DINGN V S DYY++ V G GG++L GR+ +DVI L P++ +
Sbjct: 2 PLLDINGNVVEASRDYYLV------SVIGGAGGGGLTLYRGRNELCPLDVIQLSPDL-HK 54
Query: 116 GIKIRFSQAGYSSDNIVMQWSDLNFIFSALPG--KPS-WSVDNYDKSLTQWFITDGGVEG 172
G ++RF A Y++ +I+ + DLN FS +P+ W VDNYD S +WFIT GGVEG
Sbjct: 55 GTRLRF--AAYNNTSIIHEAVDLNVKFSTETSCNEPTVWRVDNYDPSRGKWFITTGGVEG 112
Query: 173 NPGGHTLLDWFKFESDGGN--TYRIIHCPSVCSTC 205
NPG TL +WFK E G + TY I+HCPSVC +C
Sbjct: 113 NPGAQTLKNWFKLERVGTDQGTYEIVHCPSVCKSC 147
>pdb|3S8J|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8J|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8K|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
pdb|3S8K|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
Length = 184
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 54 SEKPVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVILHPNIS 113
+ KP+ DI+G V +DY+V+ A + +GG G G + + V+ P
Sbjct: 2 APKPIVDIDGKPVLYGVDYFVVSA-----IWGAGGGGLTVYGPGNKKKCPLSVVQDP--F 54
Query: 114 NHGIKIRFSQAGYSSDNIVMQWSDLNFIFSALPG---KPSWSVDNYDKSLTQWFITDGGV 170
++G I FS DNIV + DLN F+ +W VD + + W +T GG
Sbjct: 55 DNGEPIIFSAIKNVKDNIVRESVDLNVKFNITINCNETTAWKVDRF-PGVIGWTVTLGGE 113
Query: 171 EGNPGGHTLLDWFKFESDG-GNTYRIIHCPSVCST 204
+G G + FK + G +Y+ CPS T
Sbjct: 114 KGYHGFESTHSMFKIKKAGLPFSYKFHFCPSYPRT 148
>pdb|1AVA|C Chain C, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|D Chain D, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|3BX1|D Chain D, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|C Chain C, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 57 PVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVILHPNISNHG 116
PV D +G+ + +YYV+ AN R+ G GG+++ G R+ + V PN + G
Sbjct: 5 PVHDTDGHELRADANYYVLSAN------RAHG-GGLTMAPGHGRHCPLFVSQDPNGQHDG 57
Query: 117 IKIRFSQAGYS-SDNIVMQWSDLNFIFSALP---GKPSWSVDNYDKSLTQWFITDGGVEG 172
+R + G + SD I+ +D+ F A W +D+ + + IT +
Sbjct: 58 FPVRITPYGVAPSDKIIRLSTDVRISFRAYTTCLQSTEWHIDSELAAGRRHVITGPVKDP 117
Query: 173 NPGGHTLLDWFKFESDGG---NTYRIIHCPSVCSTCGCLK 209
+P G + F+ E G + Y+++ C C G +
Sbjct: 118 SPSGRE--NAFRIEKYSGAEVHEYKLMSCGDWCQDLGVFR 155
>pdb|2IWT|B Chain B, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 189
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 57 PVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVILHPNISNHG 116
PV D +G+ + +YYV+ AN R+ G GG+++ G R+ + V PN + G
Sbjct: 13 PVHDTDGHELRADANYYVLSAN------RAHG-GGLTMAPGHGRHCPLFVSQDPNGQHDG 65
Query: 117 IKIRFSQAGYS-SDNIVMQWSDLNFIFSALP---GKPSWSVDNYDKSLTQWFITDGGVEG 172
+R + G + SD I+ +D+ F A W +D+ + + IT +
Sbjct: 66 FPVRITPYGVAPSDKIIRLSTDVRISFRAYTTCLQSTEWHIDSELAAGRRHVITGPVKDP 125
Query: 173 NPGGHTLLDWFKFESDGG---NTYRIIHCPSVCSTCGCLK 209
+P G + F+ E G + Y+++ C G +
Sbjct: 126 SPSGRE--NAFRIEKYSGAEVHEYKLMSSGDWCQDLGVFR 163
>pdb|2QN4|A Chain A, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
pdb|2QN4|B Chain B, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
Length = 200
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 53 SSEKPVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVILHPNI 112
++ PV D G+ ++ YYV+PA S G+GG + R + V +
Sbjct: 22 AAPPPVYDTEGHELSADGSYYVLPA--------SPGHGGGLTMAPRVLPCPLLVAQETDE 73
Query: 113 SNHGIKIRFSQ---AGYSSDNIVMQWSDLNFIFSALP---GKPSWSVDNYDKSLTQWFIT 166
G +RF+ A D + +D+ F+A W V + + + +T
Sbjct: 74 RRKGFPVRFTPWGGAAAPEDRTIRVSTDVRIRFNAATICVQSTEWHVGDEPLTGARRVVT 133
Query: 167 DGGVEGNPGGHTLLDWFKFESDGGNTYRIIHCPSVCSTCG 206
+ +P G + F+ E GG Y+++ C C G
Sbjct: 134 GPLIGPSPSGRE--NAFRVEKYGGG-YKLVSCRDSCQDLG 170
>pdb|2DRE|A Chain A, Crystal Structure Of Water-Soluble Chlorophyll Protein
From Lepidium Virginicum At 2.00 Angstrom Resolution
pdb|2DRE|B Chain B, Crystal Structure Of Water-Soluble Chlorophyll Protein
From Lepidium Virginicum At 2.00 Angstrom Resolution
pdb|2DRE|C Chain C, Crystal Structure Of Water-Soluble Chlorophyll Protein
From Lepidium Virginicum At 2.00 Angstrom Resolution
pdb|2DRE|D Chain D, Crystal Structure Of Water-Soluble Chlorophyll Protein
From Lepidium Virginicum At 2.00 Angstrom Resolution
Length = 180
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 20/149 (13%)
Query: 55 EKPVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLI--TGRHRNGLMDVILHPNI 112
E+PV D NGN + Y++ PA+ N G +S + G R L
Sbjct: 4 EEPVKDTNGNPLKIETRYFIQPASDNNGGGLVPANVDLSHLCPLGIVRTSLP-------- 55
Query: 113 SNHGIKIRFSQAGYSSDNIVMQWSDLNFIFSA----LPGKPSWSVDNYDKSLTQWFITDG 168
G+ + S S N V+ +++ F A P +W+VD+ S ++ IT G
Sbjct: 56 YQPGLPVTISTPSSSEGNDVLTNTNIAITFDAPIWLCPSSKTWTVDS--SSEEKYIITGG 113
Query: 169 GVEGNPGGHTLLDWFKFESDGGNTYRIIH 197
+ G + K+ +G NTY+++
Sbjct: 114 DPK---SGESFFRIEKY-GNGKNTYKLVR 138
>pdb|1R8N|A Chain A, The Crystal Structure Of The Kunitz (Sti) Type Inhibitor
From Seeds Of Delonix Regia
Length = 185
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 104 MDVILHPNISNHGIKIRFSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNYDKSLTQW 163
M +I + G+ +RFS I ++L F P S K +
Sbjct: 46 MSIIQEQSDLQMGLPVRFSSPEEKQGKIYTD-TELEIEFVEKPDCAESSKWVIVKDSGEA 104
Query: 164 FITDGGVEGNPGGHTLLDWFKFESDGGNTYRIIHCP 199
+ GG E +P G + +FK E G Y+++ CP
Sbjct: 105 RVAIGGSEDHPQGELVRGFFKIEKLGSLAYKLVFCP 140
>pdb|3TC2|A Chain A, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|B Chain B, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|C Chain C, Crystal Structure Of Potato Serine Protease Inhibitor
Length = 187
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 14/164 (8%)
Query: 53 SSEKPVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVILHPNI 112
S PV D+ G ++ + Y +I + G +G G NG+ + ++
Sbjct: 3 SDATPVLDVTGKELDPRLSYRII-STFWGALGGDVYLGKSPNSDAPCANGVFR--YNSDV 59
Query: 113 SNHGIKIRFSQAGYSSDNIVMQWSDLNFIFSALPGKPS-----WSVDNYDKSLTQWFITD 167
G +RF + + + LN F+ K W V +YD SL +
Sbjct: 60 GPSGTPVRFIGSSSHFGQGIFEDELLNIQFAISTSKMCVSYTIWKVGDYDASLGTMLLET 119
Query: 168 GGVEGNPGGHTLLDWFKFESDGGNTYRIIHCPSVCSTCG--CLK 209
GG G WFK Y +++CP S+ CLK
Sbjct: 120 GGTIGQADSS----WFKIVKSSQFGYNLLYCPVTTSSDDQFCLK 159
>pdb|2GO2|A Chain A, Crystal Structure Of Bbki, A Kunitz-Type Kallikrein
Inhibitor
Length = 163
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 32/154 (20%)
Query: 58 VTDINGNAVNTSMD-YYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVILHPNISNHG 116
V D NG V+ D YY++P S G+ G++L + V+L P+ G
Sbjct: 4 VVDTNGQPVSNGADAYYLVPV--------SHGHAGLALAKIGNEAEPRAVVLDPH-HRPG 54
Query: 117 IKIRFSQAGYSSDNIVMQWSDLNFIFSALPGKPS------WSVDNYDKSLTQWFITDGGV 170
+ +RF NI+ + LN F PS W V D +TD
Sbjct: 55 LPVRFESP--LRINIIKESYFLNIKFG-----PSSSDSGVWDVIQQDPIGLAVKVTD--- 104
Query: 171 EGNPGGHTLLDWFKFESDGGNTYRIIHCPSVCST 204
+LL FK E + G Y+I++ P T
Sbjct: 105 -----TKSLLGPFKVEKE-GEGYKIVYYPERGQT 132
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 120 RFSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
+F++ GY S V W+D + IF LP W + NY
Sbjct: 193 KFTEKGYGSIKKVYIWTDQDKIF--LPDFQRWQIANY 227
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 120 RFSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
+F++ GY S V W+D + IF LP W + NY
Sbjct: 193 KFTEKGYGSIKKVYIWTDQDKIF--LPDFQRWQIANY 227
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 120 RFSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
+F++ GY S V W+D + IF LP W + NY
Sbjct: 193 KFTEKGYGSIKKVYIWTDQDKIF--LPDFQRWQIANY 227
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 120 RFSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
+F++ GY S V W+D + IF LP W + NY
Sbjct: 193 KFTEKGYGSIKKVYIWTDQDKIF--LPDFQRWQIANY 227
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 120 RFSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
+F++ GY S V W+D + IF LP W + NY
Sbjct: 189 KFTEKGYGSIKKVYIWTDQDKIF--LPDFQRWQIANY 223
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 121 FSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
F++ GY S + W+D + IF LP W ++NY
Sbjct: 188 FTKEGYGSIKKIYVWTDQDEIF--LPEFQLWQIENY 221
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 121 FSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
F++ GY S + W+D + IF LP W ++NY
Sbjct: 189 FTKEGYGSIKKIYVWTDQDEIF--LPEFQLWQIENY 222
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 121 FSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
F++ GY S + W+D + IF LP W ++NY
Sbjct: 189 FTKEGYGSIKKIYVWTDQDEIF--LPEFQLWQIENY 222
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 121 FSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
F++ GY S + W+D + IF LP W ++NY
Sbjct: 189 FTKEGYGSIKKIYVWTDQDEIF--LPEFQLWQIENY 222
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 120 RFSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNY 156
+F++ GY S V W+D + IF LP W + NY
Sbjct: 189 KFTEKGYGSIPKVYIWTDQDKIF--LPDFQRWQIANY 223
>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
pdb|3QGU|B Chain B, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
Length = 449
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 117 IKIRFSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSV 153
+K F++ G+S V D +I+ PGKPSW V
Sbjct: 357 LKTTFTEMGFS----VYGGDDAPYIWVGFPGKPSWDV 389
>pdb|1YR0|A Chain A, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|B Chain B, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|C Chain C, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|D Chain D, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
Length = 175
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 35 QIENNAIPNCNAYIATKGSSEKPVTDINGN----AVNTSMDYYVIPANANGDVGRSGGYG 90
+I N+A+ N A + V D+ A TS + VI A +G V YG
Sbjct: 20 EIYNDAVVNTTAIW------NEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYG 73
Query: 91 GISLITGRHRNGLMDVILHPNISNHGIKIRFSQA 124
G V +H + HGI R QA
Sbjct: 74 DWRAFDGYRHTREHSVYVHKDARGHGIGKRLXQA 107
>pdb|3DSM|A Chain A, Crystal Structure Of The Surface Layer Protein
Bacuni_02894 From Bacteroides Uniformis, Northeast
Structural Genomics Consortium Target Btr193d
Length = 328
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 157 DKSLTQWFITDGGVEGNPGGHTLLDWFKFESD 188
DK W ITDGG EG+P G+ ++ +++
Sbjct: 180 DKYNKXWTITDGGYEGSPYGYEAPSLYRIDAE 211
>pdb|3TXY|A Chain A, Structure Of An Isochorismatase Family Protein
(Bth_ii2229) From Burkholderia Thailandensis
Length = 199
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 87 GGYGGISLITGRHRNGLMDVILHPNISNHGIKIRFSQAGYSSDNIVMQWSDLNFIFSALP 146
G + G L R G+ D++L +N G++ +A ++ N+V+ ++
Sbjct: 110 GAFTGTDLDVQLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVSDAVS------- 162
Query: 147 GKPSWSVDNYDKSLTQWFITDGGV 170
+WS D +LTQ F G V
Sbjct: 163 ---TWSTDAQTFALTQIFPKLGQV 183
>pdb|1Z6O|A Chain A, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|B Chain B, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|C Chain C, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|D Chain D, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|E Chain E, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|F Chain F, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|G Chain G, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|H Chain H, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|I Chain I, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|J Chain J, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|K Chain K, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|L Chain L, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
Length = 212
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 40 AIPNCNAYIATKGSSEKPVTDINGNA---VNTSMDYYVIPANANG-DVGRSGGYGGISLI 95
A+P CNA GS T++ A + S DY + A N R+G +
Sbjct: 20 ALPRCNAVYGEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKL 79
Query: 96 TGRHRNGLMDVILHPNISNHGIKIRFSQ 123
+ + +D+I H ++ G K+ F Q
Sbjct: 80 SDEAWSKTIDIIKH--VTKRGDKMNFDQ 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,592,285
Number of Sequences: 62578
Number of extensions: 305848
Number of successful extensions: 744
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 30
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)