Query 048141
Match_columns 209
No_of_seqs 155 out of 258
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00178 STI Soybean trypsin in 100.0 3E-48 6.4E-53 323.4 16.0 139 57-208 1-146 (172)
2 smart00452 STI Soybean trypsin 100.0 3.6E-47 7.7E-52 317.0 16.3 137 58-208 1-144 (172)
3 PF00197 Kunitz_legume: Trypsi 100.0 1.6E-46 3.6E-51 313.4 12.4 141 57-208 1-150 (176)
4 PF07951 Toxin_R_bind_C: Clost 91.4 2.1 4.7E-05 37.5 9.7 137 54-199 6-157 (214)
5 PF09466 Yqai: Hypothetical pr 67.0 5 0.00011 29.5 2.3 21 56-76 24-44 (71)
6 PF08194 DIM: DIM protein; In 53.0 10 0.00022 24.5 1.6 16 1-24 1-16 (36)
7 TIGR02652 conserved hypothetic 47.0 12 0.00026 31.2 1.6 26 114-159 122-147 (163)
8 KOG3858 Ephrin, ligand for Eph 44.7 22 0.00048 31.6 3.0 57 61-123 116-177 (233)
9 PF09654 DUF2396: Protein of u 44.7 14 0.0003 30.8 1.6 14 147-160 133-146 (161)
10 COG2824 PhnA Uncharacterized Z 35.8 33 0.00071 27.3 2.4 24 55-78 42-65 (112)
11 PF14009 DUF4228: Domain of un 33.8 25 0.00055 27.8 1.6 19 61-79 64-82 (181)
12 PRK10220 hypothetical protein; 32.6 45 0.00097 26.5 2.7 23 56-78 42-64 (111)
13 PF07172 GRP: Glycine rich pro 31.0 35 0.00077 26.1 1.9 7 1-7 1-7 (95)
14 COG5510 Predicted small secret 30.1 39 0.00084 22.7 1.7 21 1-23 2-22 (44)
15 TIGR00686 phnA alkylphosphonat 28.7 58 0.0012 25.8 2.7 23 56-78 41-63 (109)
16 COG4066 Uncharacterized protei 26.2 73 0.0016 26.9 3.0 24 173-200 118-141 (165)
17 PF09888 DUF2115: Uncharacteri 24.7 1.1E+02 0.0025 25.4 4.0 35 169-207 115-159 (163)
18 PRK01022 hypothetical protein; 23.7 1.2E+02 0.0025 25.6 3.8 33 170-206 118-160 (167)
19 PF03831 PhnA: PhnA protein; 23.4 40 0.00087 23.7 0.9 19 58-76 2-20 (56)
20 PF15165 REC114-like: Meiotic 23.0 1.2E+02 0.0026 27.3 3.9 22 146-167 26-47 (243)
21 KOG3352 Cytochrome c oxidase, 22.8 94 0.002 26.0 3.1 32 162-197 109-147 (153)
22 PF03504 Chlam_OMP6: Chlamydia 22.2 3.7E+02 0.008 20.6 6.2 56 98-155 10-80 (95)
23 PF05474 Semenogelin: Semenoge 22.1 53 0.0011 32.5 1.7 7 1-7 1-7 (582)
24 PHA02087 hypothetical protein 22.0 62 0.0013 24.0 1.6 24 57-95 48-71 (83)
25 PF13677 MotB_plug: Membrane M 21.7 80 0.0017 21.7 2.1 16 10-25 25-40 (58)
26 PLN03207 stomagen; Provisional 20.9 70 0.0015 25.2 1.8 14 56-69 50-63 (113)
27 PF00812 Ephrin: Ephrin; Inte 20.6 31 0.00067 28.4 -0.2 18 62-79 101-118 (145)
No 1
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=100.00 E-value=3e-48 Score=323.36 Aligned_cols=139 Identities=35% Similarity=0.725 Sum_probs=125.5
Q ss_pred ceecCCCCcccCCCCEEEEcCccCCCCCCCCCccCeEEeecCCCCCCCceEeccCCCCCCeeeEEEecCCCCCCeeeecc
Q 048141 57 PVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVILHPNISNHGIKIRFSQAGYSSDNIVMQWS 136 (209)
Q Consensus 57 ~VlDt~G~~L~~G~~YYIlPa~~~~~~g~~GG~GGL~l~~t~n~tCPl~VvQ~~~e~~~GlPV~Fsp~~~~~~~vIrest 136 (209)
+|+|++|||||+|++|||+|+++ |. | |||++++++|++||++|+|++++..+|+||+|+|.+ +++++|||+|
T Consensus 1 ~VlD~~G~~l~~g~~YyI~p~~~----g~-G--GGl~l~~~~~~~CPl~VvQ~~~~~~~GlPv~Fs~~~-~~~~~I~e~t 72 (172)
T cd00178 1 PVLDTDGNPLRNGGRYYILPAIR----GG-G--GGLTLAATGNETCPLTVVQSPSELDRGLPVKFSPPN-PKSDVIREST 72 (172)
T ss_pred CcCcCCCCCCcCCCeEEEEEcee----CC-C--CcEEEcCCCCCCCCCeeEECCCCCCCCeeEEEEeCC-CCCCEEECCC
Confidence 69999999999999999999999 64 5 599999999999999999999999999999999986 6899999999
Q ss_pred ceEEEEecC----CCCCceEEeccCCCccceEEEeCCCCCCCCCCCCCcceEEEEcCC--CCceEEecCCCCC-CCccC
Q 048141 137 DLNFIFSAL----PGKPSWSVDNYDKSLTQWFITDGGVEGNPGGHTLLDWFKFESDGG--NTYRIIHCPSVCS-TCGCL 208 (209)
Q Consensus 137 dLnI~F~~~----~~St~WkV~~~d~~~~~~fV~tGG~~g~pg~~t~~~~FkIeK~~~--~~YKLvfCP~vc~-~C~~l 208 (209)
+|||+|... ++|++|+|++++. .++|||+|||++++ +.+|||||||+++ +.|||+|||++|. .|+++
T Consensus 73 ~lnI~F~~~~~c~~~st~W~V~~~~~-~~~~~V~~Gg~~~~----~~~~~FkIek~~~~~~~YKL~~Cp~~~~~~C~~V 146 (172)
T cd00178 73 DLNIEFDAPTWCCGSSTVWKVDRDST-PEGLFVTTGGVKGN----TLNSWFKIEKVSEGLNAYKLVFCPSSCDSKCGDV 146 (172)
T ss_pred cEEEEeCCCCcCCCCCCEEEEeccCC-ccCeEEEeCCcCCC----cccceEEEEECCCCCCcEEEEEcCCCCCCceeec
Confidence 999999986 5799999997555 78999999998875 6899999999986 5799999999873 58664
No 2
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=100.00 E-value=3.6e-47 Score=317.01 Aligned_cols=137 Identities=34% Similarity=0.669 Sum_probs=123.0
Q ss_pred eecCCCCcccCCCCEEEEcCccCCCCCCCCCccCeEEeecCCCCCCCceEeccCCCCCCeeeEEEecCCCCCCeeeeccc
Q 048141 58 VTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVILHPNISNHGIKIRFSQAGYSSDNIVMQWSD 137 (209)
Q Consensus 58 VlDt~G~~L~~G~~YYIlPa~~~~~~g~~GG~GGL~l~~t~n~tCPl~VvQ~~~e~~~GlPV~Fsp~~~~~~~vIrestd 137 (209)
|+|++||||++|++|||+|+++ +. | |||++++++|++||++|+|++++..+|+||+|+|.+ .++++|||+|+
T Consensus 1 VlDt~G~~l~~G~~YyI~p~~~----g~-G--GGl~l~~~~n~~CPl~VvQ~~~~~~~GlPV~Fs~~~-~~~~ii~e~t~ 72 (172)
T smart00452 1 VLDTDGNPLRNGGTYYILPAIR----GH-G--GGLTLAATGNEICPLTVVQSPNEVDNGLPVKFSPPN-PSDFIIRESTD 72 (172)
T ss_pred CCCCCCCCCcCCCcEEEEEccc----cC-C--CCEEEccCCCCCCCCeeEECCCCCCCceeEEEeecC-CCCCEEecCce
Confidence 7999999999999999999999 65 5 599999999999999999999999999999999976 78999999999
Q ss_pred eEEEEecC---CCCCceEEeccCCCccceEEEeCCCCCCCCCCCCCcceEEEEcCC--CCceEEecCCCCC--CCccC
Q 048141 138 LNFIFSAL---PGKPSWSVDNYDKSLTQWFITDGGVEGNPGGHTLLDWFKFESDGG--NTYRIIHCPSVCS--TCGCL 208 (209)
Q Consensus 138 LnI~F~~~---~~St~WkV~~~d~~~~~~fV~tGG~~g~pg~~t~~~~FkIeK~~~--~~YKLvfCP~vc~--~C~~l 208 (209)
|||+|... ++|++|+|++ ++..++|||+||| +|+.. .|||||||+++ +.|||+|||++|+ .|+++
T Consensus 73 lnI~F~~~~~C~~st~W~V~~-~~~~~~~~V~~gg---~~~~~--~~~FkIek~~~~~~~YKLv~Cp~~~~~~~C~~v 144 (172)
T smart00452 73 LNIEFDAPPLCAQSTVWTVDE-DSAPEGLAVKTGG---YPGVR--DSWFKIEKYSGESNGYKLVYCPNGSDDDKCGDV 144 (172)
T ss_pred EEEEeCCCCCCCCCCEEEEec-CCccccEEEEeCC---cCCCC--CCeEEEEECCCCCCCEEEEEcCCCCCCCccCcc
Confidence 99999976 7899999996 6678899999998 45443 69999999986 5799999999885 68765
No 3
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=100.00 E-value=1.6e-46 Score=313.37 Aligned_cols=141 Identities=35% Similarity=0.703 Sum_probs=121.4
Q ss_pred ceecCCCCcccCCCCEEEEcCccCCCCCCCCCccCeEEeecCCCCCCCceEeccCCCCCCeeeEEEe-cCCCCCCeeeec
Q 048141 57 PVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLITGRHRNGLMDVILHPNISNHGIKIRFSQ-AGYSSDNIVMQW 135 (209)
Q Consensus 57 ~VlDt~G~~L~~G~~YYIlPa~~~~~~g~~GG~GGL~l~~t~n~tCPl~VvQ~~~e~~~GlPV~Fsp-~~~~~~~vIres 135 (209)
||+|++|||||+|++|||+|+++ +. | |||++++++|++||++|+|++++..+|+||+|+| .....+++|||+
T Consensus 1 pVlD~~G~~l~~g~~YyI~p~~~----~~-G--GGl~l~~~~n~~CPl~Vvq~~~~~~~GlPv~Fs~~~~~~~~~~ir~s 73 (176)
T PF00197_consen 1 PVLDTDGNPLRNGGEYYILPAIR----GA-G--GGLTLAKTGNETCPLDVVQSPSELSRGLPVKFSPPYRNSFDTVIRES 73 (176)
T ss_dssp B-BETTSCB-BTTSEEEEEESST----GC-S--EEEEEECCTTSSSSEEEEEESSTTS-BSEEEEEESSSSSSTBCTBTT
T ss_pred CcCCCCCCCCcCCCCEEEEeCcc----CC-C--CeeEecCCCCCCCChheEEccCCCCCceeEEEEeCCcccCCCeeEcc
Confidence 69999999999999999999999 76 6 4899999999999999999999999999999998 221578899999
Q ss_pred cceEEEEecC---CCCCceEEeccCCCccceEEEeCCCCCCCCCCCCCcceEEEEcCC---CCceEEecCCCCC--CCcc
Q 048141 136 SDLNFIFSAL---PGKPSWSVDNYDKSLTQWFITDGGVEGNPGGHTLLDWFKFESDGG---NTYRIIHCPSVCS--TCGC 207 (209)
Q Consensus 136 tdLnI~F~~~---~~St~WkV~~~d~~~~~~fV~tGG~~g~pg~~t~~~~FkIeK~~~---~~YKLvfCP~vc~--~C~~ 207 (209)
|+|||+|... ..+++|+|++.++++++ ||+|||.+| .+++.|||||||+++ +.|||+|||+.|+ .|++
T Consensus 74 t~l~I~F~~~~~c~~~~~W~V~~~~~~~~~-~V~~gg~~~---~~~~~~~FkIek~~~~~~~~YKLvfCp~~~~~~~C~d 149 (176)
T PF00197_consen 74 TDLNIEFSSPTSCACSTVWKVVKDDPETGQ-FVKTGGVKG---PETVDSWFKIEKYEDGFNNAYKLVFCPSVCCDSLCGD 149 (176)
T ss_dssp SEEEEEESSECTTSSSSBEEEEEETTTTEE-EEEEESSSS---SGCGCCEEEEEEESSSSTTEEEEEEESSSSSTSSEEE
T ss_pred eEEEEEEccCCCCCccCEEEEeecCcccce-EEEeCCccc---CCccCcEEEEEEeCCCCCCcEEEEECCCccccCccce
Confidence 9999999886 67889999987666566 899999877 678999999999987 3599999999853 6866
Q ss_pred C
Q 048141 208 L 208 (209)
Q Consensus 208 l 208 (209)
+
T Consensus 150 v 150 (176)
T PF00197_consen 150 V 150 (176)
T ss_dssp E
T ss_pred e
Confidence 4
No 4
>PF07951 Toxin_R_bind_C: Clostridium neurotoxin, C-terminal receptor binding; InterPro: IPR013104 The Clostridium neurotoxin family is composed of tetanus neurotoxins and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domains and two receptor-binding domains []. This domain is the C-terminal receptor-binding domain, which adopts a modified beta-trefoil fold with a six stranded beta-barrel and a beta-hairpin triplet capping the domain []. The first step in the intoxication process is a binding event between this domain and the pre-synaptic nerve ending []. ; PDB: 3AZW_A 3N7L_A 3AZV_A 3N7M_A 3RSJ_B 3FUQ_A 3RMX_D 3OBT_A 3RMY_B 3OGG_A ....
Probab=91.41 E-value=2.1 Score=37.45 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=76.7
Q ss_pred CCCceecCCCCcccCCCCEEEEcCccCCCCCC-----CCCccCe-EEeecCCCCCCCceEeccCCCCCCeeeEEEecC--
Q 048141 54 SEKPVTDINGNAVNTSMDYYVIPANANGDVGR-----SGGYGGI-SLITGRHRNGLMDVILHPNISNHGIKIRFSQAG-- 125 (209)
Q Consensus 54 ~~e~VlDt~G~~L~~G~~YYIlPa~~~~~~g~-----~GG~GGL-~l~~t~n~tCPl~VvQ~~~e~~~GlPV~Fsp~~-- 125 (209)
.+..+.|-=||+|+-..+||++++.. .. .. .++ ....++.. =-+.+....+++..|++|++...+
T Consensus 6 ~~niLKDfWGN~L~YdkeYYl~N~~~----~n~yi~~~~--~~~~~~n~~r~~-~~~ni~~n~r~LY~G~k~iIkr~~~~ 78 (214)
T PF07951_consen 6 YTNILKDFWGNYLRYDKEYYLLNVLY----PNKYIKRKS--DSILSINNQRGT-GVFNIYLNYRDLYTGIKFIIKRYADN 78 (214)
T ss_dssp TTTB-BBTTSSB-BTTSEEEEEESSS----TTEEEEEET--TSEEEEEEEEEE-EEEEEESEETSSSSS-EEEEEESSTS
T ss_pred cccHHHHhcCCccccCceeEEEecCC----cccceeecc--cceeeecccccc-cceeeeeeehhhccCceEEEEEccCC
Confidence 34689999999999999999999875 21 01 122 33222211 112333445668899999997543
Q ss_pred CCCCCeeeeccceEEEEecCCCCCceEEec---c--CCCccceEEEeCCCCCCCCCCCCCcceEEEEcCC-CCc-eEEec
Q 048141 126 YSSDNIVMQWSDLNFIFSALPGKPSWSVDN---Y--DKSLTQWFITDGGVEGNPGGHTLLDWFKFESDGG-NTY-RIIHC 198 (209)
Q Consensus 126 ~~~~~vIrestdLnI~F~~~~~St~WkV~~---~--d~~~~~~fV~tGG~~g~pg~~t~~~~FkIeK~~~-~~Y-KLvfC 198 (209)
...+..||.+..+-|.|.. ....|+|.. + +.+..+-.+.+.+....-+.-..-..|+|++..+ ..| +..||
T Consensus 79 ~~~Dn~Vr~~D~iy~n~~~--~n~ey~l~~~~~Y~~~~~~~~kli~l~~l~~~~~~~~~~~vmqik~~~~~~~yc~q~f~ 156 (214)
T PF07951_consen 79 SNNDNRVRNGDYIYFNVVI--NNKEYRLYADTMYKNSKNQSEKLIYLLRLSDSNDNINQYIVMQIKNYNSQGTYCSQIFK 156 (214)
T ss_dssp SSTSSB-BTTEEEEEEEEE--TTEEEEEEEETEECTTSSSSEEEEEEEEEECSCTTTCEECEEEEEEEEESTSSEEEEEE
T ss_pred CCCcceeecCCEEEEEEEe--CCceEEEEeeeecccccccchheeeEEecccCCCCcCceEEEEEEecccccchhhhhhh
Confidence 1468899999999999874 456788721 1 1122223343333221111112235899999865 344 45555
Q ss_pred C
Q 048141 199 P 199 (209)
Q Consensus 199 P 199 (209)
-
T Consensus 157 ~ 157 (214)
T PF07951_consen 157 S 157 (214)
T ss_dssp E
T ss_pred h
Confidence 3
No 5
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=66.99 E-value=5 Score=29.48 Aligned_cols=21 Identities=29% Similarity=0.767 Sum_probs=12.1
Q ss_pred CceecCCCCcccCCCCEEEEc
Q 048141 56 KPVTDINGNAVNTSMDYYVIP 76 (209)
Q Consensus 56 e~VlDt~G~~L~~G~~YYIlP 76 (209)
-++.|.-|+++.+|.+|+|.|
T Consensus 24 ~~i~D~yG~EI~~~D~y~i~~ 44 (71)
T PF09466_consen 24 HPIEDFYGDEIFPGDDYFISP 44 (71)
T ss_dssp -B---TTSS-B-TTS-EEE-E
T ss_pred cceeeeeccccccCCeEEEeC
Confidence 367889999999999999965
No 6
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=52.96 E-value=10 Score=24.45 Aligned_cols=16 Identities=69% Similarity=0.827 Sum_probs=9.7
Q ss_pred CCcccchhhhhHHHHHHHHHHHHh
Q 048141 1 MKSSSLAATTTALLSFSFTLLALA 24 (209)
Q Consensus 1 mk~~~~~~~~~~~l~~~fll~a~~ 24 (209)
||.-+++ +.|+|+|++
T Consensus 1 Mk~l~~a--------~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCLSLA--------FALLLLALA 16 (36)
T ss_pred CceeHHH--------HHHHHHHHH
Confidence 8877765 445555543
No 7
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=46.96 E-value=12 Score=31.21 Aligned_cols=26 Identities=31% Similarity=0.640 Sum_probs=16.7
Q ss_pred CCCeeeEEEecCCCCCCeeeeccceEEEEecCCCCCceEEeccCCC
Q 048141 114 NHGIKIRFSQAGYSSDNIVMQWSDLNFIFSALPGKPSWSVDNYDKS 159 (209)
Q Consensus 114 ~~GlPV~Fsp~~~~~~~vIrestdLnI~F~~~~~St~WkV~~~d~~ 159 (209)
--||||.|||.. .+.+-|.|.+||-+
T Consensus 122 LYGLPveFsp~~--------------------~~~~~W~VINFdle 147 (163)
T TIGR02652 122 LYGLPVEFSPAA--------------------KQDPRWAVINFELE 147 (163)
T ss_pred ccccceeccCCC--------------------CCCCceeEEEeEee
Confidence 367788887753 33467777776554
No 8
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=44.75 E-value=22 Score=31.60 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=34.9
Q ss_pred CCCCcccCCCCEEEEcCccCCCCCCCCCc----cCeEEeecCCCCCCCceEeccCC-CCCCeeeEEEe
Q 048141 61 INGNAVNTSMDYYVIPANANGDVGRSGGY----GGISLITGRHRNGLMDVILHPNI-SNHGIKIRFSQ 123 (209)
Q Consensus 61 t~G~~L~~G~~YYIlPa~~~~~~g~~GG~----GGL~l~~t~n~tCPl~VvQ~~~e-~~~GlPV~Fsp 123 (209)
..|.+-|+|.+||++.... +...|- ||+- .+.+..|=+.|.|++.. ...-.++.+.|
T Consensus 116 p~G~EF~pG~~YY~IStSt----g~~~g~~~~~ggvc--~~~~mk~~~~V~~~~~~~~~~~~~~~~~p 177 (233)
T KOG3858|consen 116 PLGFEFQPGHTYYYISTST----GDAEGLCNLRGGVC--VTRNMKLLMKVGQSPRSGVTPEKPVSEEP 177 (233)
T ss_pred CCCccccCCCeEEEEeCCC----ccccccchhhCCEe--ccCCceEEEEecccCCCCccccccccccc
Confidence 3699999999999999887 331100 2333 34566777788888752 11223444444
No 9
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=44.65 E-value=14 Score=30.77 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=9.1
Q ss_pred CCCceEEeccCCCc
Q 048141 147 GKPSWSVDNYDKSL 160 (209)
Q Consensus 147 ~St~WkV~~~d~~~ 160 (209)
+.+-|.|.+||-+.
T Consensus 133 ~d~~W~VINFdlek 146 (161)
T PF09654_consen 133 EDPCWQVINFDLEK 146 (161)
T ss_pred CCCceeEEEeeecc
Confidence 35678877776543
No 10
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=35.77 E-value=33 Score=27.26 Aligned_cols=24 Identities=25% Similarity=0.183 Sum_probs=19.4
Q ss_pred CCceecCCCCcccCCCCEEEEcCc
Q 048141 55 EKPVTDINGNAVNTSMDYYVIPAN 78 (209)
Q Consensus 55 ~e~VlDt~G~~L~~G~~YYIlPa~ 78 (209)
...|.|.+||.|+.|..--|+=..
T Consensus 42 ~~~v~DsnGn~L~dGDsV~lIKDL 65 (112)
T COG2824 42 ALIVKDSNGNLLADGDSVTLIKDL 65 (112)
T ss_pred ceEEEcCCCcEeccCCeEEEEEee
Confidence 368999999999999887776443
No 11
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=33.78 E-value=25 Score=27.83 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=16.6
Q ss_pred CCCCcccCCCCEEEEcCcc
Q 048141 61 INGNAVNTSMDYYVIPANA 79 (209)
Q Consensus 61 t~G~~L~~G~~YYIlPa~~ 79 (209)
.-.++|++|.-||++|..+
T Consensus 64 ~~d~~L~~G~~Y~llP~~~ 82 (181)
T PF14009_consen 64 PPDEELQPGQIYFLLPMSR 82 (181)
T ss_pred CccCeecCCCEEEEEEccc
Confidence 4568899999999999876
No 12
>PRK10220 hypothetical protein; Provisional
Probab=32.64 E-value=45 Score=26.54 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=18.6
Q ss_pred CceecCCCCcccCCCCEEEEcCc
Q 048141 56 KPVTDINGNAVNTSMDYYVIPAN 78 (209)
Q Consensus 56 e~VlDt~G~~L~~G~~YYIlPa~ 78 (209)
..|.|.+|++|..|-+--++=..
T Consensus 42 ~~vkDsnG~~L~dGDsV~viKDL 64 (111)
T PRK10220 42 LIVKDANGNLLADGDSVTIVKDL 64 (111)
T ss_pred ceEEcCCCCCccCCCEEEEEeec
Confidence 46999999999999877766443
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.05 E-value=35 Score=26.07 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=3.6
Q ss_pred CCcccch
Q 048141 1 MKSSSLA 7 (209)
Q Consensus 1 mk~~~~~ 7 (209)
|-|.+|+
T Consensus 1 MaSK~~l 7 (95)
T PF07172_consen 1 MASKAFL 7 (95)
T ss_pred CchhHHH
Confidence 6655533
No 14
>COG5510 Predicted small secreted protein [Function unknown]
Probab=30.07 E-value=39 Score=22.67 Aligned_cols=21 Identities=33% Similarity=0.203 Sum_probs=10.8
Q ss_pred CCcccchhhhhHHHHHHHHHHHH
Q 048141 1 MKSSSLAATTTALLSFSFTLLAL 23 (209)
Q Consensus 1 mk~~~~~~~~~~~l~~~fll~a~ 23 (209)
||.+.|. +.+++..+|+|-+-
T Consensus 2 mk~t~l~--i~~vll~s~llaaC 22 (44)
T COG5510 2 MKKTILL--IALVLLASTLLAAC 22 (44)
T ss_pred chHHHHH--HHHHHHHHHHHHHh
Confidence 6666544 44444455555443
No 15
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=28.66 E-value=58 Score=25.85 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=18.6
Q ss_pred CceecCCCCcccCCCCEEEEcCc
Q 048141 56 KPVTDINGNAVNTSMDYYVIPAN 78 (209)
Q Consensus 56 e~VlDt~G~~L~~G~~YYIlPa~ 78 (209)
..|.|.+|++|+.|-+--|+=..
T Consensus 41 ~~~kDsnG~~L~dGDsV~liKDL 63 (109)
T TIGR00686 41 LIVKDCNGNLLANGDSVILIKDL 63 (109)
T ss_pred ceEEcCCCCCccCCCEEEEEeec
Confidence 46999999999999877766444
No 16
>COG4066 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.16 E-value=73 Score=26.86 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=18.6
Q ss_pred CCCCCCCCcceEEEEcCCCCceEEecCC
Q 048141 173 NPGGHTLLDWFKFESDGGNTYRIIHCPS 200 (209)
Q Consensus 173 ~pg~~t~~~~FkIeK~~~~~YKLvfCP~ 200 (209)
||-.-+..|-|||+|-++ --|||.
T Consensus 118 HPpgt~FPGgfkVrkkgn----vyYCPV 141 (165)
T COG4066 118 HPPGTTFPGGFKVRKKGN----VYYCPV 141 (165)
T ss_pred CCCCCcCCCceEEEeeCC----EEeccc
Confidence 555567899999999988 348983
No 17
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=24.71 E-value=1.1e+02 Score=25.41 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCcceEEEEcCCCCceEEecCC----------CCCCCcc
Q 048141 169 GVEGNPGGHTLLDWFKFESDGGNTYRIIHCPS----------VCSTCGC 207 (209)
Q Consensus 169 G~~g~pg~~t~~~~FkIeK~~~~~YKLvfCP~----------vc~~C~~ 207 (209)
+..+||=.-...|-|+|++.++ -.|||. .|+.|..
T Consensus 115 ~~PlHPvG~~FPGG~~V~~~~g----~YYCPVKdkq~d~~~aLC~FC~a 159 (163)
T PF09888_consen 115 KEPLHPVGMPFPGGFKVEEKNG----NYYCPVKDKQKDVPFALCNFCPA 159 (163)
T ss_pred CCCCCCCCCCCCCCeEEEEECC----EEeCccchhhcCCCCccCCCcCc
Confidence 3445664445789999999987 448983 6887753
No 18
>PRK01022 hypothetical protein; Provisional
Probab=23.72 E-value=1.2e+02 Score=25.59 Aligned_cols=33 Identities=30% Similarity=0.627 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCcceEEEEcCCCCceEEecCC----------CCCCCc
Q 048141 170 VEGNPGGHTLLDWFKFESDGGNTYRIIHCPS----------VCSTCG 206 (209)
Q Consensus 170 ~~g~pg~~t~~~~FkIeK~~~~~YKLvfCP~----------vc~~C~ 206 (209)
-.+||=.-...|-|+|++.++ -.|||. .|+.|.
T Consensus 118 ~PlHPvG~~FPGG~~V~~~~g----~yYCPVkdkq~d~~~slC~fC~ 160 (167)
T PRK01022 118 EPLHPVGTPFPGGFKVEEKNG----VYYCPVKDKQKDVDFSLCEFCP 160 (167)
T ss_pred CCCCCCCCCCCCCeEEEeECC----EEeCccchhhcCCCccccCCcc
Confidence 345664445788899999988 458983 577774
No 19
>PF03831 PhnA: PhnA protein; InterPro: IPR013988 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the C-terminal domain of PhnA.; PDB: 2AKK_A 2AKL_A.
Probab=23.38 E-value=40 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=11.1
Q ss_pred eecCCCCcccCCCCEEEEc
Q 048141 58 VTDINGNAVNTSMDYYVIP 76 (209)
Q Consensus 58 VlDt~G~~L~~G~~YYIlP 76 (209)
|.|.+|++|+.|-+--++=
T Consensus 2 v~DsnGn~L~dGDsV~~iK 20 (56)
T PF03831_consen 2 VKDSNGNELQDGDSVTLIK 20 (56)
T ss_dssp -B-TTS-B--TTEEEEESS
T ss_pred eEcCCCCCccCCCEEEEEe
Confidence 7899999999997766653
No 20
>PF15165 REC114-like: Meiotic recombination protein REC114-like
Probab=23.03 E-value=1.2e+02 Score=27.26 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=15.6
Q ss_pred CCCCceEEeccCCCccceEEEe
Q 048141 146 PGKPSWSVDNYDKSLTQWFITD 167 (209)
Q Consensus 146 ~~St~WkV~~~d~~~~~~fV~t 167 (209)
+.++.|||.+.+++.+...+++
T Consensus 26 ~~s~~wkv~es~ee~~~lvlti 47 (243)
T PF15165_consen 26 ASSPSWKVFESNEESGYLVLTI 47 (243)
T ss_pred CCCccceeecccccCCceEEEE
Confidence 5678999997677766655444
No 21
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=22.79 E-value=94 Score=26.04 Aligned_cols=32 Identities=13% Similarity=0.340 Sum_probs=21.6
Q ss_pred ceEEEeCCCCCCCCCCCCCcceEEEEcCC-------CCceEEe
Q 048141 162 QWFITDGGVEGNPGGHTLLDWFKFESDGG-------NTYRIIH 197 (209)
Q Consensus 162 ~~fV~tGG~~g~pg~~t~~~~FkIeK~~~-------~~YKLvf 197 (209)
.+.|.-|..+++ +.-.||.|+|-+. ..|||+.
T Consensus 109 ~RiVGC~c~eD~----~~V~Wmwl~Kge~~rc~eCG~~fkL~~ 147 (153)
T KOG3352|consen 109 KRIVGCGCEEDS----HAVVWMWLEKGETQRCPECGHYFKLVP 147 (153)
T ss_pred ceEEeecccCCC----cceEEEEEEcCCcccCCcccceEEeee
Confidence 356888765553 3458999999865 4566665
No 22
>PF03504 Chlam_OMP6: Chlamydia cysteine-rich outer membrane protein 6; InterPro: IPR003506 Three cysteine-rich proteins (also believed to be lipoproteins) make up the extracellular matrix of the Chlamydial outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. As these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism. The largest of these is the major outer membrane protein (MOMP), and constitutes around 60% of the total protein for the membrane []. OMP6 is the second largest, with a molecular mass of 58kDa, while the OMP3 protein is ~15kDa []. MOMP is believed to elicit the strongest immune response, and has recently been linked to heart disease through its sequence similarity to a murine heart-muscle specific alpha myosin []. The OMP6 family plays a structural role in the outer membrane during the EB stage of the Chlamydial cell, and different biovars show a small, yet highly significant, change at peptide charge level []. Members of this family include Chlamydia trachomatis, Chlamydia pneumoniae and Chlamydia psittaci.; GO: 0005201 extracellular matrix structural constituent
Probab=22.22 E-value=3.7e+02 Score=20.64 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCCCCCCceEeccCCC---CCCeeeEEEecCCCCCC----eeeeccceEEEEecC-CC-------CCceEEec
Q 048141 98 RHRNGLMDVILHPNIS---NHGIKIRFSQAGYSSDN----IVMQWSDLNFIFSAL-PG-------KPSWSVDN 155 (209)
Q Consensus 98 ~n~tCPl~VvQ~~~e~---~~GlPV~Fsp~~~~~~~----vIrestdLnI~F~~~-~~-------St~WkV~~ 155 (209)
-|..|...+-|...+. ..-.|+.|.... +++ +|..-.+-..+|... ++ --+|+|+.
T Consensus 10 vndd~nveitq~vP~yatvGspYPiEi~a~g--k~DcvnVviTqqLPce~eFV~SdPettp~~D~kLVW~Ig~ 80 (95)
T PF03504_consen 10 VNDDCNVEITQRVPKYATVGSPYPIEILAQG--KKDCVNVVITQQLPCEVEFVRSDPETTPTPDGKLVWKIGR 80 (95)
T ss_pred ecCCcceEEeecCcceeecCCCCCEEEEEEc--ccceeEEEEeecCCcceEEEecCCccccCCCCEEEEEecc
Confidence 4778999999988763 234588987653 233 677777888999765 21 24899984
No 23
>PF05474 Semenogelin: Semenogelin; InterPro: IPR008836 This family consists of several mammalian semenogelin (I and II) proteins. Freshly ejaculated Homo sapiens semen has the appearance of a loose gel in which the predominant structural protein components are the seminal vesicle secreted semenogelins (Sg) [].; GO: 0005198 structural molecule activity, 0019953 sexual reproduction, 0005576 extracellular region, 0030141 stored secretory granule
Probab=22.09 E-value=53 Score=32.50 Aligned_cols=7 Identities=43% Similarity=0.278 Sum_probs=6.5
Q ss_pred CCcccch
Q 048141 1 MKSSSLA 7 (209)
Q Consensus 1 mk~~~~~ 7 (209)
||++++|
T Consensus 1 MK~~I~F 7 (582)
T PF05474_consen 1 MKSIIFF 7 (582)
T ss_pred CCceeeh
Confidence 9999988
No 24
>PHA02087 hypothetical protein
Probab=21.97 E-value=62 Score=23.95 Aligned_cols=24 Identities=33% Similarity=0.749 Sum_probs=16.2
Q ss_pred ceecCCCCcccCCCCEEEEcCccCCCCCCCCCccCeEEe
Q 048141 57 PVTDINGNAVNTSMDYYVIPANANGDVGRSGGYGGISLI 95 (209)
Q Consensus 57 ~VlDt~G~~L~~G~~YYIlPa~~~~~~g~~GG~GGL~l~ 95 (209)
..+|.||..+. +|-.. || ||++..
T Consensus 48 ~lvdsdg~~ie-------lpe~~-------gg-ggi~fd 71 (83)
T PHA02087 48 MLVDSDGVKIE-------LPESE-------GG-GGITFD 71 (83)
T ss_pred EEEcCCCcEEE-------CCccc-------CC-Cceeec
Confidence 46788887765 45554 44 699874
No 25
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=21.70 E-value=80 Score=21.74 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHhh
Q 048141 10 TTALLSFSFTLLALAT 25 (209)
Q Consensus 10 ~~~~l~~~fll~a~~t 25 (209)
-|++|+++.+|+++++
T Consensus 25 mTLLl~fFVlL~s~s~ 40 (58)
T PF13677_consen 25 MTLLLAFFVLLFSMSS 40 (58)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4677777777777653
No 26
>PLN03207 stomagen; Provisional
Probab=20.87 E-value=70 Score=25.22 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=7.3
Q ss_pred CceecCCCCcccCC
Q 048141 56 KPVTDINGNAVNTS 69 (209)
Q Consensus 56 e~VlDt~G~~L~~G 69 (209)
+.+-+-+|+.+...
T Consensus 50 ~~~~~l~g~~~~k~ 63 (113)
T PLN03207 50 ETVKLLNGGHLSKS 63 (113)
T ss_pred hccccccccccchh
Confidence 44555556655443
No 27
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=20.62 E-value=31 Score=28.36 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.6
Q ss_pred CCCcccCCCCEEEEcCcc
Q 048141 62 NGNAVNTSMDYYVIPANA 79 (209)
Q Consensus 62 ~G~~L~~G~~YYIlPa~~ 79 (209)
.|-+-++|.+||++....
T Consensus 101 ~G~EF~pG~~YY~ISts~ 118 (145)
T PF00812_consen 101 LGLEFQPGHDYYYISTST 118 (145)
T ss_dssp TSSS--TTEEEEEEEEES
T ss_pred CCeeecCCCeEEEEEccC
Confidence 789999999999999887
Done!