BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048142
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 331 bits (848), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 240/400 (60%), Gaps = 48/400 (12%)
Query: 1 YVEDSACEEALLLFREVQ-HKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV 59
Y ++ EAL++F E+Q K + +++T+VS L AC +GALE+G W+H YI K I +
Sbjct: 339 YEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM 398
Query: 60 DVGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQ 97
+ + AL +DV +A+I LAM G GN+A++ FY+MQ
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQ 458
Query: 98 IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
VKP+ +TF V ACSH GLVDE S F+ M YGI P +HY C+V +LGR+G +
Sbjct: 459 EANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYL 518
Query: 158 AKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217
KA + I+ MP+ V G LLGAC+IH NL AE A +LLEL P N G++V+LSN Y
Sbjct: 519 EKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIY 578
Query: 218 SSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA------------------ 259
+ KW+ V +R+ M +KK PGC IE+DG++HEF+
Sbjct: 579 AKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVM 638
Query: 260 ------GFVPNKSEVLFDMDEEE-KETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVC 312
G+ P S+VL ++EEE KE +LNLH+EKLAI +GL+S +IR+IKNLRVC
Sbjct: 639 EKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVC 698
Query: 313 NDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH+ +IS++Y+RE +V DR RFHHF+NG CSC DFW
Sbjct: 699 GDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 58/241 (24%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
+V+ + ++AL LF++++ + + VTMV +L AC + LE G + YI + + V+
Sbjct: 207 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVN 266
Query: 61 VGLGMAL----------------------------------------------------- 67
+ L A+
Sbjct: 267 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Query: 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQI-RGVKPDAITFVGVLVACSHAGLVD-ERI 125
KD++ ALI G+ N+AL F+E+Q+ + +K + IT V L AC+ G ++ R
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 126 SHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRI 185
H + +K+GIR + L+++ + G + K+ E+ ++ D FV ++G +
Sbjct: 387 IHSYI--KKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAM 443
Query: 186 H 186
H
Sbjct: 444 H 444
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 22/114 (19%)
Query: 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL----------------- 67
+K T L+ A + +L +G LH +K + DV + +L
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 68 -----KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACS 116
KDV++ ++I G +KALE F +M+ VK +T VGVL AC+
Sbjct: 190 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 243
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 327 bits (839), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 160/399 (40%), Positives = 248/399 (62%), Gaps = 47/399 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y +++ E+A+ LF ++ +G+ ++ MVS++ +C HLGALE G + Y++K ++ V+
Sbjct: 224 YAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVN 283
Query: 61 VGLGMALKDV----------------------MTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ LG AL D+ ++ +++I LA+ G +KA+ YF +M
Sbjct: 284 LILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMIS 343
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
G P +TF VL ACSH GLV++ + + M + +GI P +EHYGC+V +LGRAG++A
Sbjct: 344 LGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLA 403
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+AE I M + + +LG LLGAC+I+ N E AER L+++ P++ G YV+LSN Y+
Sbjct: 404 EAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYA 463
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA------------------- 259
+ +W K++ +R++M E+ +KKPPG LIE+DG +++F
Sbjct: 464 CAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEIL 523
Query: 260 ------GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
G+ N + FD+DEEEKE+++++H+EKLAI +G++ PG IRI+KNLRVC
Sbjct: 524 GKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCE 583
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCHT T +IS+VY RE +V DRNRFHHF+NG CSC+D+W
Sbjct: 584 DCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 65 MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD-- 122
M +++ T + +I A KA++ F M+ GV + V V+ +C+H G ++
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG 268
Query: 123 ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGA 182
ER + + S + ++ LV + R G I KA + + +P D ++
Sbjct: 269 ERAYEYVVKSH---MTVNLILGTALVDMFWRCGDIEKAIHVFEGLP-ETDSLSWSSIIKG 324
Query: 183 CRIHDNLEAAERAAQQLLEL 202
+H + A Q++ L
Sbjct: 325 LAVHGHAHKAMHYFSQMISL 344
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 325 bits (832), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 174/405 (42%), Positives = 244/405 (60%), Gaps = 53/405 (13%)
Query: 1 YVEDSACEEALLLFREVQ-----HKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK 55
YV +EAL LFRE+Q + ++ TM ++L AC LGALE G W+H YI K
Sbjct: 169 YVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKY 228
Query: 56 NIEVDVGLGMAL-----------------------KDVMTLTALIVVLAMCGQGNKALEY 92
++E+D+ LG AL KDV +A+I LAM G ++ +
Sbjct: 229 HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQL 288
Query: 93 FYEMQIR-GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151
F EM + P+++TFVG+L AC H GL++E S+F +M E++GI PSI+HYGC+V +
Sbjct: 289 FSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLY 348
Query: 152 GRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYV 211
GR+G I +AE I +MPM D + G LL R+ +++ E A ++L+EL P N G+YV
Sbjct: 349 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYV 408
Query: 212 ILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV-------------- 257
+LSN Y+ + +W +VK IR M + I K PGC +EV+GVVHEFV
Sbjct: 409 LLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYA 468
Query: 258 ----------KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIK 307
+AG+V + EVL D++E++KE AL+ H+EKLAI F L+ PG +RIIK
Sbjct: 469 MLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIK 528
Query: 308 NLRVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
NLR+C DCH +ISK+++RE VV D NRFHHF++GSCSC+DFW
Sbjct: 529 NLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 65 MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG-----VKPDAITFVGVLVACSHAG 119
M ++V++ + LI MCG+ +AL+ F EMQ+ V+P+ T VL AC G
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 120 LVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167
+ E+ + +KY + I L+ + + G + +A+ + +
Sbjct: 214 AL-EQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNAL 260
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/391 (41%), Positives = 238/391 (60%), Gaps = 46/391 (11%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL 67
++A+ +FRE++ + + VT+VS+L A + LG+LE+G WLH Y I +D LG AL
Sbjct: 256 KDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSAL 315
Query: 68 KD----------------------VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105
D V+T +A+I A+ GQ A++ F +M+ GV+P
Sbjct: 316 IDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD 375
Query: 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIK 165
+ ++ +L ACSH GLV+E +F+ M G+ P IEHYGC+V +LGR+G + +AEE I
Sbjct: 376 VAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFIL 435
Query: 166 NMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225
NMP+ D + LLGACR+ N+E +R A L++++P + G+YV LSN Y+S W +
Sbjct: 436 NMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSE 495
Query: 226 VKRIRELMAERNIKKPPGCILIEVDGVVHEFVK------------------------AGF 261
V +R M E++I+K PGC LI++DGV+HEFV AG+
Sbjct: 496 VSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGY 555
Query: 262 VPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNI 321
P ++VL +++EE+KE L+ H+EK+A FGL+S PG IRI+KNLR+C DCH++ +
Sbjct: 556 RPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKL 615
Query: 322 ISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
ISKVY R+ V DR RFHHF++GSCSC D+W
Sbjct: 616 ISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 65 MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDER 124
M + V++ +I ++ G A+E F EM+ ++P+ +T V VL A S G + E
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSL-EL 292
Query: 125 ISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP 168
+L +E GIR L+ + + G I KA + + +P
Sbjct: 293 GEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLP 336
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 320 bits (819), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 227/399 (56%), Gaps = 47/399 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
YV+ +EAL LF E+Q+ + D V++ + L AC LGALE G W+H Y+ K I +D
Sbjct: 222 YVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMD 281
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
LG L K V TALI A G G +A+ F EMQ
Sbjct: 282 SVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQK 341
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
G+KP+ ITF VL ACS+ GLV+E F M Y ++P+IEHYGC+V +LGRAG +
Sbjct: 342 MGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLD 401
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+A+ I+ MP+ + + G LL ACRIH N+E E + L+ + P +GG YV +N ++
Sbjct: 402 EAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHA 461
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA------------------- 259
+KW K R LM E+ + K PGC I ++G HEF+
Sbjct: 462 MDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRR 521
Query: 260 -----GFVPNKSEVLFDM-DEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
G+VP E+L D+ D++E+E ++ H+EKLAIT+GL+ PG +IRI+KNLRVC
Sbjct: 522 KLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCK 581
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH T +ISK+Y R+ V+ DR RFHHF++G CSC D+W
Sbjct: 582 DCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 58/215 (26%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE--------- 58
E +LLL++ + + T SLL AC++L A E +H I K E
Sbjct: 97 ERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSL 156
Query: 59 ----------------------------------------VDVGLG----MALKDVMTLT 74
+D+ L MA K+ ++ T
Sbjct: 157 INSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWT 216
Query: 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDE-RISHFNLMSE 133
+I +AL+ F+EMQ V+PD ++ L AC+ G +++ + H L
Sbjct: 217 TMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKT 276
Query: 134 KYGIRPSIEHYGC-LVYILGRAGRIAKAEELIKNM 167
+ + + GC L+ + + G + +A E+ KN+
Sbjct: 277 RIRMDSVL---GCVLIDMYAKCGEMEEALEVFKNI 308
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 318 bits (814), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 230/398 (57%), Gaps = 46/398 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + EAL +F +Q +G+ + V M+S+L ACT LGAL+ G W H YI + I++
Sbjct: 215 YAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKIT 274
Query: 61 VGL----------------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V L GM K+V T ++ + LAM G G K LE F M+
Sbjct: 275 VRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQ 334
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
GV P+A+TFV VL CS G VDE HF+ M ++GI P +EHYGCLV + RAGR+
Sbjct: 335 DGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLE 394
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
A +I+ MPM V LL A R++ NLE A++++LEL N G+YV+LSN Y+
Sbjct: 395 DAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYA 454
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVK-------------------- 258
S W V +R+ M + ++K PGC ++EV+G VHEF
Sbjct: 455 DSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISR 514
Query: 259 ----AGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCND 314
AG+ + + V+FD+DEEEKE AL LH+EK AI FG++S V IRI+KNLRVC D
Sbjct: 515 RLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGD 574
Query: 315 CHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
CH + +ISK++NRE +V DRNRFHHFK+G CSC FW
Sbjct: 575 CHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 64 GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDE 123
GM +D + A+I A G+ +AL F+ MQ+ GVK + + + VL AC+ G +D+
Sbjct: 199 GMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQ 258
Query: 124 -RISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167
R +H + E+ I+ ++ LV + + G + KA E+ M
Sbjct: 259 GRWAHSYI--ERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGM 301
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 315 bits (806), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 169/400 (42%), Positives = 242/400 (60%), Gaps = 48/400 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK----- 55
Y + +EALLLF+E+ G T + VTM+S+L AC HLGA+++G W+H YI K+
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401
Query: 56 -----------------NIEV--DVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEM 96
+IE V + K + + A+I AM G+ + + + F M
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461
Query: 97 QIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156
+ G++PD ITFVG+L ACSH+G++D F M++ Y + P +EHYGC++ +LG +G
Sbjct: 462 RKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGL 521
Query: 157 IAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNR 216
+AEE+I M M D + LL AC++H N+E E A+ L+++ P+N GSYV+LSN
Sbjct: 522 FKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNI 581
Query: 217 YSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV------------------- 257
Y+S+ +W +V + R L+ ++ +KK PGC IE+D VVHEF+
Sbjct: 582 YASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 641
Query: 258 -----KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVC 312
KAGFVP+ SEVL +M+EE KE AL H+EKLAI FGL+S PG + I+KNLRVC
Sbjct: 642 EVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 701
Query: 313 NDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+CH AT +ISK+Y RE + DR RFHHF++G CSC D+W
Sbjct: 702 RNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYI-------- 52
Y E +EAL LF+++ + D+ TMV+++ AC G++E+G +H +I
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSN 300
Query: 53 ----------MKKNIEVDVGLGM----ALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
K E++ G+ KDV++ LI +AL F EM
Sbjct: 301 LKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 99 RGVKPDAITFVGVLVACSHAGLVD-ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
G P+ +T + +L AC+H G +D R H + G+ + L+ + + G I
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 420
Query: 158 AKAEELIKNM 167
A ++ ++
Sbjct: 421 EAAHQVFNSI 430
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
YV++ E+A +F + H+ D V+ +L+ G +E L I
Sbjct: 179 YVQNGRLEDAHKVFDKSPHR----DVVSYTALIKGYASRGYIENAQKLFDEI-------- 226
Query: 61 VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGL 120
+KDV++ A+I A G +ALE F +M V+PD T V V+ AC+ +G
Sbjct: 227 -----PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 121 VDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP 168
+ E +L + +G +++ L+ + + G + A L + +P
Sbjct: 282 I-ELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 315 bits (806), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 238/400 (59%), Gaps = 48/400 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV 59
Y + +AL+LF+++ +G D++T+V+ L AC+ +GALE G W+H ++ I +
Sbjct: 233 YAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRL 292
Query: 60 DVGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQ 97
+V + L KD++ A+I AM G AL F EMQ
Sbjct: 293 NVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQ 352
Query: 98 -IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156
I G++P ITF+G L AC+HAGLV+E I F M ++YGI+P IEHYGCLV +LGRAG+
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412
Query: 157 IAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNR 216
+ +A E IKNM M D + +LG+C++H + + A+ L+ L N G YV+LSN
Sbjct: 413 LKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNI 472
Query: 217 YSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEF-------------------- 256
Y+S ++ V ++R LM E+ I K PG IE++ VHEF
Sbjct: 473 YASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKI 532
Query: 257 ---VKA-GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVC 312
+K+ G+VPN + VL D++E EKE +L +H+E+LAI +GL+S PG ++I KNLRVC
Sbjct: 533 SERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVC 592
Query: 313 NDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+DCHT T +ISK+ R+ V+ DRNRFHHF +GSCSC DFW
Sbjct: 593 SDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHF 128
D+ TA I ++ G ++A + ++ + P+ TF +L +CS ++ H
Sbjct: 94 DLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTK---SGKLIHT 150
Query: 129 NLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP 168
+++ GI P + LV + + G + A+++ MP
Sbjct: 151 HVLKFGLGIDPYVA--TGLVDVYAKGGDVVSAQKVFDRMP 188
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 314 bits (805), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 238/399 (59%), Gaps = 47/399 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK------ 54
+ E+ EEAL L+ E+ KG+ D T+VSLL AC +GAL +G +H Y++K
Sbjct: 197 FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 256
Query: 55 ---KNIEVDVGL-------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQ- 97
N+ +D+ M K+ ++ T+LIV LA+ G G +A+E F M+
Sbjct: 257 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 316
Query: 98 IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
G+ P ITFVG+L ACSH G+V E +F M E+Y I P IEH+GC+V +L RAG++
Sbjct: 317 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 376
Query: 158 AKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217
KA E IK+MPM + + LLGAC +H + + AE A Q+L+L P++ G YV+LSN Y
Sbjct: 377 KKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMY 436
Query: 218 SSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV-------------------- 257
+S ++W V++IR+ M +KK PG L+EV VHEF+
Sbjct: 437 ASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMT 496
Query: 258 ----KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
G+VP S V D++EEEKE A+ H+EK+AI F L+S I ++KNLRVC
Sbjct: 497 GRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCA 556
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH A ++SKVYNRE VV DR+RFHHFKNGSCSC+D+W
Sbjct: 557 DCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 28/192 (14%)
Query: 1 YVEDSACEEALLLFREVQHKGLT-GDKVTMVSLLLACTHLGALEVGMWLHPYIMKKN--- 56
Y E A L+RE++ GL D T L+ A T + + +G +H +++
Sbjct: 95 YAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGS 154
Query: 57 -IEVDVGL------------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQ 97
I V L M KD++ ++I A G+ +AL + EM
Sbjct: 155 LIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMN 214
Query: 98 IRGVKPDAITFVGVLVACSHAGLVD--ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155
+G+KPD T V +L AC+ G + +R+ + + K G+ ++ L+ + R G
Sbjct: 215 SKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI---KVGLTRNLHSSNVLLDLYARCG 271
Query: 156 RIAKAEELIKNM 167
R+ +A+ L M
Sbjct: 272 RVEEAKTLFDEM 283
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 313 bits (803), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 235/399 (58%), Gaps = 47/399 (11%)
Query: 1 YVEDSACEEALLLFRE-VQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV 59
Y + EA +FR V++K +T + +T+ ++LLA +H GAL +G +H +++ +E
Sbjct: 261 YAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED 320
Query: 60 DVGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQ 97
DV +G ++ K+V + TA+I M G KALE F M
Sbjct: 321 DVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380
Query: 98 IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
GV+P+ ITFV VL ACSHAGL E FN M ++G+ P +EHYGC+V +LGRAG +
Sbjct: 381 DSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFL 440
Query: 158 AKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217
KA +LI+ M M D + LL ACRIH N+E AE + +L EL N G Y++LS+ Y
Sbjct: 441 QKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIY 500
Query: 218 SSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEF--------------------- 256
+ + +WK V+R+R +M R + KPPG L+E++G VH F
Sbjct: 501 ADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELN 560
Query: 257 ---VKAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
++AG+V N S V D+DEEEKE L +H+EKLAI FG+++ +PG + ++KNLRVC+
Sbjct: 561 RKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCS 620
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH +ISK+ +RE VV D RFHHFK+G CSC D+W
Sbjct: 621 DCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 306 bits (784), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/399 (40%), Positives = 235/399 (58%), Gaps = 47/399 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK----KN 56
Y + EAL LFRE+Q K L +++T++S+L +C LG+L++G W+H Y K K
Sbjct: 205 YARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY 264
Query: 57 IEVDVGL------------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
++V+ L M KD +A+IV A G+ K++ F M+
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRS 324
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
V+PD ITF+G+L ACSH G V+E +F+ M K+GI PSI+HYG +V +L RAG +
Sbjct: 325 ENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLE 384
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
A E I +P++ + LL AC H+NL+ AE+ ++++ EL +GG YVILSN Y+
Sbjct: 385 DAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYA 444
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVK-------------------- 258
++KW+ V +R++M +R K PGC IEV+ VVHEF
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVK 504
Query: 259 ----AGFVPNKSEVLF-DMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
+G+VP+ S V+ +M+++EKE L H+EKLAITFGL++ PG IR++KNLRVC
Sbjct: 505 ELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCR 564
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH A +IS ++ R+ V+ D RFHHF++G CSC DFW
Sbjct: 565 DCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALK 68
E LF E+ G+ D T SLL AC ALE G LH MK ++ +V + L
Sbjct: 112 EVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLI 171
Query: 69 DVMT----------------------LTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106
++ T A+I A + N+AL F EMQ + +KP+ I
Sbjct: 172 NMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEI 231
Query: 107 TFVGVLVACSHAGLVD 122
T + VL +C+ G +D
Sbjct: 232 TLLSVLSSCALLGSLD 247
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/410 (40%), Positives = 234/410 (57%), Gaps = 58/410 (14%)
Query: 1 YVEDSACEEALLLFREVQH------KG-----LTGDKVTMVSLLLACTHLGALEVGMWLH 49
YV E+ALLL ++Q+ KG L + +T++++L +C L AL G +H
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540
Query: 50 PYIMKKNIEVDVGLGMAL----------------------KDVMTLTALIVVLAMCGQGN 87
Y +K N+ DV +G AL K+V+T +I+ M G G
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600
Query: 88 KALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147
+A++ M ++GVKP+ +TF+ V ACSH+G+VDE + F +M YG+ PS +HY C+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660
Query: 148 VYILGRAGRIAKAEELIKNMPMALDHF-VLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206
V +LGRAGRI +A +L+ MP + LLGA RIH+NLE E AAQ L++L P+
Sbjct: 661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 720
Query: 207 GGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV--------- 257
YV+L+N YSS+ W K +R M E+ ++K PGC IE VH+FV
Sbjct: 721 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 780
Query: 258 ---------------KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVL 302
K G+VP+ S VL +++E+EKE L H+EKLAI FG+++ PG +
Sbjct: 781 EKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTI 840
Query: 303 IRIIKNLRVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
IR+ KNLRVCNDCH AT ISK+ +RE ++ D RFH FKNG+CSC D+W
Sbjct: 841 IRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 24/134 (17%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLG---ALEVGMWLHPYIMKKN------IE 58
E AL FR + + + T+VS++ AC++L L +G +H Y ++K I
Sbjct: 181 EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIIN 240
Query: 59 VDVGLGMAL---------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP 103
V + L +D++T ++ L Q +ALEY EM + GV+P
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
Query: 104 DAITFVGVLVACSH 117
D T VL ACSH
Sbjct: 301 DEFTISSVLPACSH 314
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK-NIEVDVGLGMAL 67
EAL RE+ +G+ D+ T+ S+L AC+HL L G LH Y +K +++ + +G AL
Sbjct: 285 EALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSAL 344
Query: 68 KDVMT----------------------LTALIVVLAMCGQGNKALEYFYEM-QIRGVKPD 104
D+ A+I + +AL F M + G+ +
Sbjct: 345 VDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLAN 404
Query: 105 AITFVGVLVACSHAGLVDER 124
+ T GV+ AC +G +
Sbjct: 405 STTMAGVVPACVRSGAFSRK 424
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 43/238 (18%)
Query: 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD- 60
V + EA+L + ++ G+ D +LL A L +E+G +H ++ K VD
Sbjct: 73 VRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDS 132
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V + L ++ ++ +LI L + ALE F M
Sbjct: 133 VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD 192
Query: 99 RGVKPDAITFVGVLVACSH----AGLVDERISHFNLMSEKYGIRPS-IEHY--GCLVYIL 151
V+P + T V V+ ACS+ GL+ + H YG+R + + LV +
Sbjct: 193 ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVH------AYGLRKGELNSFIINTLVAMY 246
Query: 152 GRAGRIAKAEELIKNM---PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE-LLPD 205
G+ G++A ++ L+ + + + VL L C+ LEA E + +LE + PD
Sbjct: 247 GKLGKLASSKVLLGSFGGRDLVTWNTVLSSL---CQNEQLLEALEYLREMVLEGVEPD 301
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 302 bits (773), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/398 (40%), Positives = 231/398 (58%), Gaps = 47/398 (11%)
Query: 2 VEDSACEEALLLFREVQ-HKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
V+ S EEA+ +F +Q +G+ D VTM+S+ AC HLGAL++ W++ YI K I++D
Sbjct: 445 VQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLD 504
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V LG L +DV TA I +AM G +A+E F +M
Sbjct: 505 VRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIE 564
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
+G+KPD + FVG L ACSH GLV + F M + +G+ P HYGC+V +LGRAG +
Sbjct: 565 QGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLE 624
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+A +LI++MPM + + LL ACR+ N+E A AA+++ L P+ GSYV+LSN Y+
Sbjct: 625 EAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYA 684
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA------------------- 259
S+ +W + ++R M E+ ++KPPG I++ G HEF
Sbjct: 685 SAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQ 744
Query: 260 -----GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCND 314
G VP+ S VL D+DE+EK L+ H+EKLA+ +GL+S G IRI+KNLRVC+D
Sbjct: 745 RASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSD 804
Query: 315 CHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
CH+ SKVYNRE ++ D NRFH+ + G CSC DFW
Sbjct: 805 CHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 23/223 (10%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y C EA+LLF + + G++ DK T L AC A G+ +H I+K
Sbjct: 109 YASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK------ 162
Query: 61 VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGL 120
+G A KD+ +L+ A CG+ + A + F EM R V +++ ++ +
Sbjct: 163 --MGYA-KDLFVQNSLVHFYAECGELDSARKVFDEMSERNV----VSWTSMICGYARRDF 215
Query: 121 VDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE---LIKNMPMALDHFVLG 177
+ + F M + P+ C++ + + E+ I+N + ++ ++
Sbjct: 216 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS 275
Query: 178 GLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSS 220
L+ + ++ A+R L + G S + L N +S+
Sbjct: 276 ALVDMYMKCNAIDVAKR-------LFDEYGASNLDLCNAMASN 311
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGL 63
D A + L FR V+ + +T + VTMV ++ AC L LE G ++ +I IEV+ +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273
Query: 64 GMALKDV-MTLTALIVV-----------LAMC----------GQGNKALEYFYEMQIRGV 101
AL D+ M A+ V L +C G +AL F M GV
Sbjct: 274 VSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGV 333
Query: 102 KPDAITFVGVLVACSH 117
+PD I+ + + +CS
Sbjct: 334 RPDRISMLSAISSCSQ 349
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 59/223 (26%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK------ 54
YV EAL +F + G+ D+++M+S + +C+ L + G H Y+++
Sbjct: 312 YVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESW 371
Query: 55 -------------------------------------------KNIEVDVGL----GMAL 67
+N EVD M
Sbjct: 372 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPE 431
Query: 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIR-GVKPDAITFVGVLVACSHAGLVD--ER 124
K++++ +I L +A+E F MQ + GV D +T + + AC H G +D +
Sbjct: 432 KNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKW 491
Query: 125 ISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167
I ++ EK GI+ + LV + R G A + ++
Sbjct: 492 IYYY---IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 57/160 (35%), Gaps = 10/160 (6%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL 67
+E + R + +GL D T+ L+ LG E K+ E G
Sbjct: 46 DELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRE-----SLSFAKEVFENSESYGTCF 100
Query: 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISH 127
+LI A G N+A+ F M G+ PD TF L AC+ + I
Sbjct: 101 ----MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQI 156
Query: 128 FNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167
L+ K G + LV+ G + A ++ M
Sbjct: 157 HGLIV-KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEM 195
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/398 (39%), Positives = 219/398 (55%), Gaps = 46/398 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y ++ E+A+ LFRE+Q + + VT+ +L AC LGAL +G W+H + + E
Sbjct: 395 YTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ + AL K+ +T +I + GQG +AL FYEM
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
G+ P +TF+ VL ACSHAGLV E FN M +YG PS++HY C+V ILGRAG +
Sbjct: 515 SGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQ 574
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+A + I+ M + V LLGACRIH + A +++L EL PDN G +V+LSN +S
Sbjct: 575 RALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHS 634
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV--------------------- 257
+ R + + +R+ +R + K PG LIE+ H F
Sbjct: 635 ADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEG 694
Query: 258 ---KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCND 314
+AG+ P L D++EEE+E + +H+E+LAI FGL++ PG IRIIKNLRVC D
Sbjct: 695 KMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLD 754
Query: 315 CHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
CHT T +ISK+ R VV D NRFHHFK+G CSC D+W
Sbjct: 755 CHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 28/190 (14%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + E +L LF+E+ G T+VSL+ HL + +H Y +K N
Sbjct: 297 YTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSH 353
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ AL K + + A+I G A+ F EMQ
Sbjct: 354 ASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQK 413
Query: 99 RGVKPDAITFVGVLVACSHAGLVD-ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
P+ +T +L AC+ G + + H + S + SI L+ + + G I
Sbjct: 414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF--ESSIYVSTALIGMYAKCGSI 471
Query: 158 AKAEELIKNM 167
A+A L M
Sbjct: 472 AEARRLFDLM 481
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 296 bits (758), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 223/397 (56%), Gaps = 46/397 (11%)
Query: 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDV 61
+E+ E A +F +++ G+ D+ T+ +L A + L ALE G +H +K N D
Sbjct: 594 IENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDP 653
Query: 62 GLGMALKDV-------------------MTLTA---LIVVLAMCGQGNKALEYFYEMQIR 99
+G +L D+ M +TA ++V LA G+G + L+ F +M+
Sbjct: 654 FVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSL 713
Query: 100 GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK 159
G+KPD +TF+GVL ACSH+GLV E H M YGI+P IEHY CL LGRAG + +
Sbjct: 714 GIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQ 773
Query: 160 AEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS 219
AE LI++M M + LL ACR+ + E +R A +LLEL P + +YV+LSN Y++
Sbjct: 774 AENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAA 833
Query: 220 SRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV---------------------- 257
+ KW ++K R +M +KK PG IEV +H FV
Sbjct: 834 ASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRD 893
Query: 258 --KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDC 315
+ G+VP L D++EEEKE AL H+EKLA+ FGL+S P IR+IKNLRVC DC
Sbjct: 894 IKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDC 953
Query: 316 HTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
H A I+KVYNRE V+ D NRFH FK+G CSC D+W
Sbjct: 954 HNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/392 (39%), Positives = 224/392 (57%), Gaps = 48/392 (12%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL- 67
EAL LF +Q +G+ T++S+L C L +L G +H +++ +VDV + L
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLM 373
Query: 68 ---------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG-VKPDA 105
KD++ ++I A G G +AL+ F EM + G KP+
Sbjct: 374 TMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433
Query: 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIK 165
+TFV L ACS+AG+V+E + + M +G++P HY C+V +LGRAGR +A E+I
Sbjct: 434 VTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMID 493
Query: 166 NMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225
+M + D V G LLGACR H L+ AE A++L+E+ P+N G+Y++LSN Y+S +W
Sbjct: 494 SMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWAD 553
Query: 226 VKRIRELMAERNIKKPPGCILIEVDGVVHEFVK-------------------------AG 260
V +R+LM R ++K PGC EV+ VH F + AG
Sbjct: 554 VAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAG 613
Query: 261 FVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATN 320
+ P+ S L D+DEEEK +L H+E+LA+ + L+ G+ IR++KNLRVC+DCHTA
Sbjct: 614 YNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIK 673
Query: 321 IISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
IISKV RE ++ D NRFHHF+NG CSCKD+W
Sbjct: 674 IISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISH 127
KD + T++I L G+ ++A E F EM R V IT+ ++ VD+
Sbjct: 170 KDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKI 225
Query: 128 FNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP----MALDHFVLG-GLLG- 181
F++M EK + + ++ + GRI AEEL + MP +A + + G G G
Sbjct: 226 FDVMPEKTEV-----SWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGE 280
Query: 182 ---ACRIHDNLEAAERAAQQLL 200
A R+ D+++ A+ Q +
Sbjct: 281 IAKARRVFDSMKERNDASWQTV 302
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 287 bits (735), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 152/391 (38%), Positives = 223/391 (57%), Gaps = 47/391 (12%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL- 67
EAL LF ++Q +G+ +++S+L C L +L+ G +H ++++ + DV + L
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLM 373
Query: 68 ---------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106
KD++ ++I A G G +AL+ F+EM G P+ +
Sbjct: 374 TMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKV 433
Query: 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKN 166
T + +L ACS+AG ++E + F M K+ + P++EHY C V +LGRAG++ KA ELI++
Sbjct: 434 TLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIES 493
Query: 167 MPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKV 226
M + D V G LLGAC+ H L+ AE AA++L E PDN G+YV+LS+ +S KW V
Sbjct: 494 MTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDV 553
Query: 227 KRIRELMAERNIKKPPGCILIEVDGVVHEFVK-------------------------AGF 261
+R+ M N+ K PGC IEV VH F + AG+
Sbjct: 554 AVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGY 613
Query: 262 VPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNI 321
P+ S VL D+DEEEK +L+ H+E+LA+ +GL+ GV IR++KNLRVC DCH A +
Sbjct: 614 SPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKL 673
Query: 322 ISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
ISKV RE ++ D NRFHHF NG CSC+D+W
Sbjct: 674 ISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 18/143 (12%)
Query: 65 MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDER 124
M +KDV+ T +I L G+ ++A F EM+ R V +T+ ++ VD
Sbjct: 167 MPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVA 222
Query: 125 ISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPM----ALDHFVLG-GL 179
F +M EK + + G Y L +GRI AEE + MPM A + ++G G
Sbjct: 223 RKLFEVMPEKTEVSWTSMLLG---YTL--SGRIEDAEEFFEVMPMKPVIACNAMIVGFGE 277
Query: 180 LG----ACRIHDNLEAAERAAQQ 198
+G A R+ D +E + A +
Sbjct: 278 VGEISKARRVFDLMEDRDNATWR 300
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 287 bits (735), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 156/405 (38%), Positives = 237/405 (58%), Gaps = 54/405 (13%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
YVE +EAL +F E+ G+ D V+M S++ AC +LG L+ W+H I +E +
Sbjct: 319 YVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESE 378
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ + AL ++V++ +++I L+M G+ + AL F M+
Sbjct: 379 LSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQ 438
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
V+P+ +TFVGVL CSH+GLV+E F M+++Y I P +EHYGC+V + GRA +
Sbjct: 439 ENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLR 498
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+A E+I++MP+A + + G L+ ACRIH LE + AA+++LEL PD+ G+ V++SN Y+
Sbjct: 499 EALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYA 558
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV--------------------- 257
++W+ V+ IR +M E+N+ K G I+ +G HEF+
Sbjct: 559 REQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVS 618
Query: 258 ---KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMP-------GVLIRIIK 307
AG+VP+ VL D++EEEK+ + H+EKLA+ FGL++ GV IRI+K
Sbjct: 619 KLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IRIVK 677
Query: 308 NLRVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
NLRVC DCH ++SKVY RE +V DR RFH +KNG CSC+D+W
Sbjct: 678 NLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/219 (16%), Positives = 85/219 (38%), Gaps = 64/219 (29%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGL---- 63
+EA LF E++ + D++ + +++ AC G + ++ ++++ ++ +D L
Sbjct: 194 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTAL 253
Query: 64 ------------------GMALKDVMTLTALIVVLAMCGQ-------------------- 85
M+++++ TA++ + CG+
Sbjct: 254 VTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWT 313
Query: 86 -----------GNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDE-----RISHFN 129
+AL F EM G+KPD ++ V+ AC++ G++D+ H N
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373
Query: 130 LMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP 168
G+ + L+ + + G + ++ + MP
Sbjct: 374 ------GLESELSINNALINMYAKCGGLDATRDVFEKMP 406
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 23/182 (12%)
Query: 10 ALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLH-----------PYIMKKNIE 58
+L ++ ++H G D+ + + +L A + + AL GM LH P++ ++
Sbjct: 95 TILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMD 154
Query: 59 VDVGLG-----------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT 107
+ G M+ +DV+T +I G ++A + F EM+ V PD +
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMI 214
Query: 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167
++ AC G + + + + E +R LV + AG + A E + M
Sbjct: 215 LCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAREFFRKM 273
Query: 168 PM 169
+
Sbjct: 274 SV 275
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 285 bits (728), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 155/392 (39%), Positives = 221/392 (56%), Gaps = 48/392 (12%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALK 68
E+ L FRE+Q G++ ++V++ +L AC+ G+ E G LH ++ K V + AL
Sbjct: 252 ESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALI 311
Query: 69 D-----------------------VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105
D +++ T++I LAM GQG +A+ F EM GV PD
Sbjct: 312 DMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDG 371
Query: 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIK 165
I+F+ +L ACSHAGL++E +F+ M Y I P IEHYGC+V + GR+G++ KA + I
Sbjct: 372 ISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFIC 431
Query: 166 NMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225
MP+ V LLGAC H N+E AE+ Q+L EL P+N G V+LSN Y+++ KWK
Sbjct: 432 QMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKD 491
Query: 226 VKRIRELMAERNIKKPPGCILIEVDGVVHEFV-------------------------KAG 260
V IR+ M + IKK L+EV +++F +AG
Sbjct: 492 VASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAG 551
Query: 261 FVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATN 320
+ P + L+D++EEEKE ++ H+EKLA+ F L G IRI+KNLR+C DCH
Sbjct: 552 YTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMK 611
Query: 321 IISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+ SKVY E +V DRNRFH FK+GSCSC+D+W
Sbjct: 612 LTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 65 MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD-E 123
M +D ++ + +IV +A G N++ YF E+Q G+ P+ ++ GVL ACS +G +
Sbjct: 229 MPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFG 288
Query: 124 RISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGAC 183
+I H EK G + L+ + R G + A + + M ++
Sbjct: 289 KILHG--FVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGL 346
Query: 184 RIHDNLEAAERAAQQLLE--LLPDNGGSYVIL 213
+H E A R ++ + PD G S++ L
Sbjct: 347 AMHGQGEEAVRLFNEMTAYGVTPD-GISFISL 377
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYI--MKKNIEVDVGLGM 65
EEA+ LF E+ G+T D ++ +SLL AC+H G +E G Y MK+ ++
Sbjct: 353 EEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEG---EDYFSEMKRVYHIE----- 404
Query: 66 ALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD 122
++ ++ + G+ KA ++ +M I P AI + +L ACS G ++
Sbjct: 405 --PEIEHYGCMVDLYGRSGKLQKAYDFICQMPI---PPTAIVWRTLLGACSSHGNIE 456
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 284 bits (727), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 228/400 (57%), Gaps = 48/400 (12%)
Query: 1 YVEDSACEEALLLFREV--QHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE 58
Y ++ EAL FRE+ + K + + VTMVS+L AC L ALE G +H YI+++ ++
Sbjct: 258 YAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLD 317
Query: 59 VDVGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEM 96
+ + AL +DV++ +LI + G G KA++ F EM
Sbjct: 318 SILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEM 377
Query: 97 QIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156
G P +TFV VL ACSH GLV+E F M +GI+P IEHY C+V +LGRA R
Sbjct: 378 LANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANR 437
Query: 157 IAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNR 216
+ +A +++++M V G LLG+CRIH N+E AERA+++L L P N G+YV+L++
Sbjct: 438 LDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADI 497
Query: 217 YSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV------------------- 257
Y+ ++ W +VKR+++L+ R ++K PG +EV ++ FV
Sbjct: 498 YAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKL 557
Query: 258 -----KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVC 312
+ G++P VL++++ EEKE + H+EKLA+ FGL++ G IRI KNLR+C
Sbjct: 558 AEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLC 617
Query: 313 NDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH T ISK +E +V D NRFH FKNG CSC D+W
Sbjct: 618 EDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 32 LLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL----------------------KD 69
L+L C H +L + +H +I+ + D L L +
Sbjct: 83 LILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRT 142
Query: 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVAC 115
+ AL L + G G + L +++M GV+ D T+ VL AC
Sbjct: 143 IYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/398 (39%), Positives = 220/398 (55%), Gaps = 46/398 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
YVE+S E+ L LFR + +G+ + + S LL C+ L AL++G +H + K + D
Sbjct: 259 YVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCND 318
Query: 61 VG--------------LG--------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V LG M KDV+ A+I A G +KAL F EM
Sbjct: 319 VTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMID 378
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
++PD ITFV VL+AC+HAGLV+ +++F M Y + P +HY C+V +LGRAG++
Sbjct: 379 NKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLE 438
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+A +LI++MP V G LLGACR+H N+E AE AA++LL+L N YV L+N Y+
Sbjct: 439 EALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYA 498
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEF---------------------- 256
S +W+ V R+R+ M E N+ K PG IE+ VH F
Sbjct: 499 SKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEK 558
Query: 257 --VKAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCND 314
AG+ P L +++EE+KE L H+EKLA+ FG + G I++ KNLR+C D
Sbjct: 559 KMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGD 618
Query: 315 CHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
CH A IS++ RE +V D RFHHFK+GSCSC D+W
Sbjct: 619 CHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 217/398 (54%), Gaps = 46/398 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + EAL LF +++ +G ++ + S L C + ALE+G LH ++K E
Sbjct: 384 YSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG 443
Query: 61 VGLG----------------------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+G MA KD+++ +I + G G AL +F M+
Sbjct: 444 CFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKR 503
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
G+KPD T V VL ACSH GLVD+ +F M++ YG+ P+ +HY C+V +LGRAG +
Sbjct: 504 EGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLE 563
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
A L+KNMP D + G LLGA R+H N E AE AA ++ + P+N G YV+LSN Y+
Sbjct: 564 DAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYA 623
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV--------------------- 257
SS +W V ++R M ++ +KK PG IE+ H F
Sbjct: 624 SSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDL 683
Query: 258 ---KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCND 314
KAG+V S VL D++EEEKE + H+E+LA+ +G++ G IR+IKNLRVC D
Sbjct: 684 RMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCED 743
Query: 315 CHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
CH A ++++ R ++ D NRFHHFK+GSCSC D+W
Sbjct: 744 CHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 282 bits (722), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/399 (38%), Positives = 222/399 (55%), Gaps = 47/399 (11%)
Query: 1 YVEDSACEEALLLFREVQHKG-LTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV 59
Y ++ EA+ ++ ++ +G + ++ T VS+L AC+ GAL GM LH ++K + +
Sbjct: 425 YAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 484
Query: 60 DVGLGMALKDV----------------------MTLTALIVVLAMCGQGNKALEYFYEMQ 97
DV + +L D+ + LI G G KA+ F EM
Sbjct: 485 DVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML 544
Query: 98 IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
GVKPD ITFV +L ACSH+GLVDE F +M YGI PS++HYGC+V + GRAG++
Sbjct: 545 DEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQL 604
Query: 158 AKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217
A + IK+M + D + G LL ACR+H N++ + A++ L E+ P++ G +V+LSN Y
Sbjct: 605 ETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMY 664
Query: 218 SSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA------------------ 259
+S+ KW+ V IR + + ++K PG +EVD V F
Sbjct: 665 ASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQ 724
Query: 260 ------GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
G+VP+ VL D++++EKE L H+E+LAI F L++ IRI KNLRVC
Sbjct: 725 AKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCG 784
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH+ T ISK+ RE +V D NRFHHFKNG CSC D+W
Sbjct: 785 DCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 1 YVEDSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV 59
Y + +EAL L GL D VT+VSLL ACT G G+ +H Y +K +E
Sbjct: 226 YCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLES 280
Query: 60 DVGLG----------------------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQ 97
++ + M ++D+++ ++I + Q +A+ F EM+
Sbjct: 281 ELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMR 340
Query: 98 IRGVKPDAITFVGVLVACSHAG 119
+ ++PD +T + + S G
Sbjct: 341 LSRIQPDCLTLISLASILSQLG 362
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)
Query: 10 ALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV-DVGLGMAL- 67
A+ LF+E++ + D +T++SL + LG + + + ++K + D+ +G A+
Sbjct: 332 AISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVV 391
Query: 68 ---------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG-VKPDA 105
DV++ +I A G ++A+E + M+ G + +
Sbjct: 392 VMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQ 451
Query: 106 ITFVGVLVACSHAGLVDERIS-HFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELI 164
T+V VL ACS AG + + + H L+ K G+ + L + G+ GR+ A L
Sbjct: 452 GTWVSVLPACSQAGALRQGMKLHGRLL--KNGLYLDVFVVTSLADMYGKCGRLEDALSLF 509
Query: 165 KNMP 168
+P
Sbjct: 510 YQIP 513
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 281 bits (718), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 153/407 (37%), Positives = 234/407 (57%), Gaps = 64/407 (15%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGL---- 63
+ AL LFRE+Q + D TM S+L AC LG+L +G W H ++++K +VDV +
Sbjct: 234 DSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRK-CDVDVAMDVLV 291
Query: 64 ----------------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEM--QIR 99
GM +D+ + A+I+ A G+ +A+ +F M +
Sbjct: 292 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRE 351
Query: 100 GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK 159
V+P+++TFVG+L+AC+H G V++ +F++M Y I P++EHYGC+V ++ RAG I +
Sbjct: 352 NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITE 411
Query: 160 AEELIKNMPMALDHFVLGGLLGAC-RIHDNLEAAERAAQQLLELLPDN-------GGSYV 211
A +++ +MPM D + LL AC + ++E +E A+ ++ DN G+YV
Sbjct: 412 AIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYV 471
Query: 212 ILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA------------ 259
+LS Y+S+ +W V +R+LM+E I+K PGC IE++G+ HEF
Sbjct: 472 LLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQ 531
Query: 260 ------------GFVPNKSEV-LFD-MDEEEKETALNLHTEKLAITFGLVSPMPGVLIRI 305
G++P++S+ L D ++ KE +L LH+E+LAI FGL++ P IRI
Sbjct: 532 QLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRI 591
Query: 306 IKNLRVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
KNLRVCNDCH T +ISKV+N E +V DR RFHHFK+GSCSC D+W
Sbjct: 592 FKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 280 bits (717), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 160/403 (39%), Positives = 224/403 (55%), Gaps = 51/403 (12%)
Query: 1 YVEDSACEEALLLFREVQHK---GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNI 57
Y+ + + L+LF ++++ + D VT + L AC +LGAL+ G +H +I + +
Sbjct: 189 YLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGL 248
Query: 58 EVDVGL----------------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYE 95
+ L GM ++V++ TALI LAM G G +A+E F E
Sbjct: 249 SGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNE 308
Query: 96 MQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLM-SEKYGIRPSIEHYGCLVYILGRA 154
M G+ P+ T G+L ACSH+GLV E + F+ M S ++ I+P++ HYGC+V +LGRA
Sbjct: 309 MLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRA 368
Query: 155 GRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214
+ KA LIK+M M D + LLGACR+H ++E ER L+EL + G YV+L
Sbjct: 369 RLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLL 428
Query: 215 NRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVK---------------- 258
N YS+ KW+KV +R LM E+ I PGC IE+ G VHEF+
Sbjct: 429 NTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLA 488
Query: 259 --------AGFVPNKSEVLFDMD-EEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNL 309
AG+V + L +++ EEEK AL H+EKLAI FG++ PG IR+ KNL
Sbjct: 489 EINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNL 548
Query: 310 RVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
R C DCH +S VY+R +V DR+RFHHFK GSCSC DFW
Sbjct: 549 RTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 280 bits (717), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 147/394 (37%), Positives = 217/394 (55%), Gaps = 47/394 (11%)
Query: 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLG 64
S E+AL LF+ + G + SL AC+ G LE G W+H Y++K ++ G
Sbjct: 241 SGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG 300
Query: 65 ----------------------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102
+A +DV++ +L+ A G G +A+ +F EM+ G++
Sbjct: 301 NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIR 360
Query: 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162
P+ I+F+ VL ACSH+GL+DE ++ LM +K GI P HY +V +LGRAG + +A
Sbjct: 361 PNEISFLSVLTACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALR 419
Query: 163 LIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK 222
I+ MP+ + LL ACR+H N E AA+ + EL PD+ G +VIL N Y+S +
Sbjct: 420 FIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGR 479
Query: 223 WKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV------------------------K 258
W R+R+ M E +KK P C +E++ +H FV +
Sbjct: 480 WNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKE 539
Query: 259 AGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTA 318
G+VP+ S V+ +D++E+E L H+EK+A+ F L++ PG I I KN+RVC DCHTA
Sbjct: 540 LGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTA 599
Query: 319 TNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+ SKV RE +V D NRFHHFK+G+CSCKD+W
Sbjct: 600 IKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + +EA+ F E++ G+ ++++ +S+L AC+H G L+ G W + +MKK+
Sbjct: 338 YAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG-WHYYELMKKD---- 392
Query: 61 VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVAC 115
G+ + + ++ +L G N+AL + EM I +P A + +L AC
Sbjct: 393 -GI---VPEAWHYVTVVDLLGRAGDLNRALRFIEEMPI---EPTAAIWKALLNAC 440
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGL 63
D C+ ALL F ++ G + ++ T+ S++ A G LH + +K + +V +
Sbjct: 140 DRPCD-ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHV 198
Query: 64 GMALKDVMT----------------------LTALIVVLAMCGQGNKALEYFYEMQIRGV 101
G AL D+ T ALI A KALE F M G
Sbjct: 199 GSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF 258
Query: 102 KPDAITFVGVLVACSHAGLVDE 123
+P ++ + ACS G +++
Sbjct: 259 RPSHFSYASLFGACSSTGFLEQ 280
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 221/398 (55%), Gaps = 46/398 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
YV++ EAL LFR++ + V S++ AC HL L +G LH Y+++ +
Sbjct: 318 YVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSN 377
Query: 61 VGLGMALKDV----------------------MTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ + AL D+ ++ TA+I+ A+ G G++A+ F EM+
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
+GVKP+ + FV VL ACSH GLVDE +FN M++ YG+ +EHY + +LGRAG++
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 497
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+A I M + V LL +C +H NLE AE+ A+++ + +N G+YV++ N Y+
Sbjct: 498 EAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYA 557
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV--------------------- 257
S+ +WK++ ++R M ++ ++K P C IE+ H FV
Sbjct: 558 SNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVME 617
Query: 258 ---KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCND 314
K G+V + S VL D+DEE K L H+E+LA+ FG+++ PG IR+ KN+R+C D
Sbjct: 618 QMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTD 677
Query: 315 CHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
CH A ISK+ RE +V D +RFHHF G+CSC D+W
Sbjct: 678 CHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 22/139 (15%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + E+AL + RE+ L D T+ S+L + + G +H Y+++K I+ D
Sbjct: 217 YAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSD 276
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V +G +L +D ++ +L+ G+ N+AL F +M
Sbjct: 277 VYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVT 336
Query: 99 RGVKPDAITFVGVLVACSH 117
VKP A+ F V+ AC+H
Sbjct: 337 AKVKPGAVAFSSVIPACAH 355
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 279 bits (713), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 222/399 (55%), Gaps = 47/399 (11%)
Query: 1 YVEDSACEEALLLFREV-QHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV 59
Y ++ EAL LF + + K + D+ T+ +L AC L A + G +H YIM+
Sbjct: 473 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS 532
Query: 60 DVGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQ 97
D + +L KD+++ T +I M G G +A+ F +M+
Sbjct: 533 DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMR 592
Query: 98 IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
G++ D I+FV +L ACSH+GLVDE FN+M + I P++EHY C+V +L R G +
Sbjct: 593 QAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDL 652
Query: 158 AKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217
KA I+NMP+ D + G LL CRIH +++ AE+ A+++ EL P+N G YV+++N Y
Sbjct: 653 IKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIY 712
Query: 218 SSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV-------------------- 257
+ + KW++VKR+R+ + +R ++K PGC IE+ G V+ FV
Sbjct: 713 AEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVR 772
Query: 258 ----KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
+ G+ P L D +E EKE AL H+EKLA+ G++S G +IR+ KNLRVC
Sbjct: 773 ARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCG 832
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH +SK+ RE V+ D NRFH FK+G CSC+ FW
Sbjct: 833 DCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + EA+ LF E++ +G++ D T+ ++L C L+ G +H +I E D
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK----END 427
Query: 61 VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGL 120
+G D+ AL+ + A CG +A F EM+++ D I++ ++ S
Sbjct: 428 LGF-----DIFVSNALMDMYAKCGSMQEAELVFSEMRVK----DIISWNTIIGGYSKNCY 478
Query: 121 VDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEEL 163
+E +S FNL+ E+ P C++ K E+
Sbjct: 479 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 22/145 (15%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK----- 55
YV + E+ L +F ++ G+ D T+VS+ C + +G +H +K
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 330
Query: 56 ----NIEVD-------------VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
N +D V M+ + V++ T++I A G +A++ F EM+
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390
Query: 99 RGVKPDAITFVGVLVACSHAGLVDE 123
G+ PD T VL C+ L+DE
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDE 415
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 13 LFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK------------------ 54
LF+++ G+ D T + + + L ++ G LH +I+K
Sbjct: 182 LFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYL 241
Query: 55 KNIEVD----VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVG 110
KN VD V M +DV++ ++I G K L F +M + G++ D T V
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301
Query: 111 VLVACSHAGLV 121
V C+ + L+
Sbjct: 302 VFAGCADSRLI 312
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 277 bits (709), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 224/403 (55%), Gaps = 51/403 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNI--- 57
Y++++ EA+ L+ ++ G D V++ S+L AC AL +G +H YI +K +
Sbjct: 284 YMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPN 343
Query: 58 -------------------EVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
DV M +DV++ TA+I G+G A+ F ++Q
Sbjct: 344 LLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQD 403
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
G+ PD+I FV L ACSHAGL++E S F LM++ Y I P +EH C+V +LGRAG++
Sbjct: 404 SGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVK 463
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+A I++M M + V G LLGACR+H + + AA +L +L P+ G YV+LSN Y+
Sbjct: 464 EAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYA 523
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV--------------------- 257
+ +W++V IR +M + +KK PG +EV+ ++H F+
Sbjct: 524 KAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVK 583
Query: 258 ---KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPM-----PGVLIRIIKNL 309
+ G+VP+ L D++EE+KET L +H+EKLAI F L++ IRI KNL
Sbjct: 584 KMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNL 643
Query: 310 RVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
R+C DCH A +IS++ +RE ++ D NRFH F+ G CSC D+W
Sbjct: 644 RICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y ++ ++AL + RE++ ++ D TM SLL A ++ V M++ D
Sbjct: 216 YAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV-MYVK----------D 264
Query: 61 VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVAC--SHA 118
+ M K +++ +I V +A+E + M+ G +PDA++ VL AC + A
Sbjct: 265 MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324
Query: 119 GLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167
+ ++I + E+ + P++ L+ + + G + KA ++ +NM
Sbjct: 325 LSLGKKIHGY---IERKKLIPNLLLENALIDMYAKCGCLEKARDVFENM 370
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 277 bits (708), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 149/391 (38%), Positives = 225/391 (57%), Gaps = 47/391 (12%)
Query: 9 EALLLFREV-QHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL 67
E LLLFR + L ++ MVS LLAC + GAL +GM +H ++++ E+++ + +L
Sbjct: 216 ECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSL 275
Query: 68 KDV----------------------MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105
D+ +T +A+I LA+ G+G AL F +M G++PD
Sbjct: 276 VDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDH 335
Query: 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIK 165
+ +V VL ACSH+GLV E F M ++ + P+ EHYGCLV +LGRAG + +A E I+
Sbjct: 336 VVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQ 395
Query: 166 NMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225
++P+ + + L CR+ N+E + AAQ+LL+L N G Y+++SN YS + W
Sbjct: 396 SIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDD 455
Query: 226 VKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA------------------------GF 261
V R R +A + +K+ PG ++E+ G H FV G+
Sbjct: 456 VARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGY 515
Query: 262 VPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNI 321
P+ +++L ++DEEEK+ L H++K+AI FGL+ PG +I+I +NLR+C+DCHT T
Sbjct: 516 SPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKK 575
Query: 322 ISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
IS +Y RE VV DRNRFH FK G+CSCKD+W
Sbjct: 576 ISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 34/276 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
YV + EEAL + E+ +G D T LL ACT L ++ G +H + K +E D
Sbjct: 107 YVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEAD 166
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEM-Q 97
V + +L K + ++++ A G ++ L F M
Sbjct: 167 VFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCS 226
Query: 98 IRGVKPDAITFVGVLVACSHAGLVDERIS-HFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156
+K + V L+AC++ G ++ +S H L+ + ++ LV + + G
Sbjct: 227 ETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQ--TSLVDMYVKCGC 284
Query: 157 IAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE--LLPDNGGSYVILS 214
+ KA + + M ++ ++ +H E+A R ++++ L PD+ YV +
Sbjct: 285 LDKALHIFQKME-KRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDH-VVYVSVL 342
Query: 215 NRYSSSRKWKKVKRIRELMAERNIKKPP----GCIL 246
N S S K+ +R+ M + +P GC++
Sbjct: 343 NACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLV 378
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 219/390 (56%), Gaps = 47/390 (12%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALK 68
+AL F +++ + + D T VS++ A L W+H +M+ ++ +V + AL
Sbjct: 421 DALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALV 480
Query: 69 D----------------------VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106
D V T A+I G G ALE F EMQ +KP+ +
Sbjct: 481 DMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGV 540
Query: 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKN 166
TF+ V+ ACSH+GLV+ + F +M E Y I S++HYG +V +LGRAGR+ +A + I
Sbjct: 541 TFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQ 600
Query: 167 MPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKV 226
MP+ V G +LGAC+IH N+ AE+AA++L EL PD+GG +V+L+N Y ++ W+KV
Sbjct: 601 MPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKV 660
Query: 227 KRIRELMAERNIKKPPGCILIEVDGVVHEFV------------------------KAGFV 262
++R M + ++K PGC ++E+ VH F +AG+V
Sbjct: 661 GQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYV 720
Query: 263 PNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNII 322
P+ + VL ++ + KE L+ H+EKLAI+FGL++ G I + KNLRVC DCH AT I
Sbjct: 721 PDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYI 779
Query: 323 SKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
S V RE VV D RFHHFKNG+CSC D+W
Sbjct: 780 SLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 22/136 (16%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYI----MKKN 56
YV++ +EA+L+F+++ +G+ V+++ L AC LG LE G ++H + +N
Sbjct: 312 YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 371
Query: 57 I--------------EVDVGLGM----ALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ EVD M + +++ A+I+ A G+ AL YF +M+
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 431
Query: 99 RGVKPDAITFVGVLVA 114
R VKPD T+V V+ A
Sbjct: 432 RTVKPDTFTYVSVITA 447
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 22/141 (15%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y ++ AL + + + + L +T+VS+L A + L + VG +H Y M+ +
Sbjct: 211 YSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL 270
Query: 61 VGLGMALKD----------------------VMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V + AL D V++ ++I +A+ F +M
Sbjct: 271 VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330
Query: 99 RGVKPDAITFVGVLVACSHAG 119
GVKP ++ +G L AC+ G
Sbjct: 331 EGVKPTDVSVMGALHACADLG 351
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 27/191 (14%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
+ + S ++AL F +++ + LL C L VG +H ++K +D
Sbjct: 110 FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD 169
Query: 61 V----GLG------------------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ GL M +D+++ ++ + G ALE M
Sbjct: 170 LFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE 229
Query: 99 RGVKPDAITFVGVLVACSHAGLVD--ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156
+KP IT V VL A S L+ + I + + S G + LV + + G
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS---GFDSLVNISTALVDMYAKCGS 286
Query: 157 IAKAEELIKNM 167
+ A +L M
Sbjct: 287 LETARQLFDGM 297
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/396 (38%), Positives = 224/396 (56%), Gaps = 44/396 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK------ 54
+ ++S + AL LF+ ++ G ++ T+ S+L ACT L LE+GM H +I+K
Sbjct: 235 FAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLI 294
Query: 55 -KNIEVD-------------VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG 100
N VD V M +DV+T + +I LA G +AL+ F M+ G
Sbjct: 295 LNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSG 354
Query: 101 VKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160
KP+ IT VGVL ACSHAGL+++ +F M + YGI P EHYGC++ +LG+AG++ A
Sbjct: 355 TKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDA 414
Query: 161 EELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSS 220
+L+ M D LLGACR+ N+ AE AA++++ L P++ G+Y +LSN Y++S
Sbjct: 415 VKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANS 474
Query: 221 RKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA--------------------- 259
+KW V+ IR M +R IKK PGC IEV+ +H F+
Sbjct: 475 QKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRL 534
Query: 260 ---GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCH 316
G+VP + VL D++ E+ E +L H+EKLA+ FGL++ +IRI KNLR+C DCH
Sbjct: 535 TGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCH 594
Query: 317 TATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+ SK+ R V+ D R+HHF++G CSC D+W
Sbjct: 595 VFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 65 MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDER 124
M ++V++ T +I + C KALE M V+P+ T+ VL +C+ G+ D R
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCN--GMSDVR 179
Query: 125 ISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGA 182
+ H ++ E G+ + L+ + + G A + M D V ++G
Sbjct: 180 MLHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG-DAIVWNSIIGG 234
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 217/390 (55%), Gaps = 46/390 (11%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL- 67
EAL LFRE+Q G+ + VT+ S+L AC ++ AL G H + ++ ++ +V +G AL
Sbjct: 371 EALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALI 430
Query: 68 ---------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106
K+++ +L+ +M G+ + + F + +KPD I
Sbjct: 431 DMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFI 490
Query: 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKN 166
+F +L AC GL DE +F +MSE+YGI+P +EHY C+V +LGRAG++ +A +LIK
Sbjct: 491 SFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKE 550
Query: 167 MPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKV 226
MP D V G LL +CR+ +N++ AE AA++L L P+N G+YV+LSN Y++ W +V
Sbjct: 551 MPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEV 610
Query: 227 KRIRELMAERNIKKPPGCILIEV------------------------DGVVHEFVKAGFV 262
IR M +KK PGC I+V D + E K+G
Sbjct: 611 DSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHR 670
Query: 263 PNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNII 322
PN L D++E+E+E L H+EKLA+ FGL++ G +++IKNLR+C DCH I
Sbjct: 671 PNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFI 730
Query: 323 SKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
S RE + D NRFHHFK+G CSC DFW
Sbjct: 731 SSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL 67
+EA+++F+++ H G D+VT+ S+L + L +G +H Y++K+ + L
Sbjct: 234 KEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGL---------L 284
Query: 68 KDVMTLTALIVVLAMCGQGNKALEYF--YEMQIRGVKPDAITFVGVLVACSHAGLVDERI 125
KD ++A+I + G + F +EM GV IT S GLVD+ +
Sbjct: 285 KDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYIT------GLSRNGLVDKAL 338
Query: 126 SHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMA---LDHFVLGGLLGA 182
F L E+ + ++ + ++ + G+ +A EL + M +A +H + +L A
Sbjct: 339 EMFELFKEQT-MELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 183 C 183
C
Sbjct: 398 C 398
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH-AGLVDERISH 127
+V++ T++I A G+ +ALE F EMQ+ GVKP+ +T +L AC + A L R +H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 128 FNLMSEKYGIRPSI---EHYG-CLVYILGRAGRIAKAEELIKNMP 168
+ +R + H G L+ + + GRI ++ + MP
Sbjct: 412 ------GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP 450
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 22/143 (15%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLG---- 64
+++ +F + GL D + +L C L A +VG +H +++D +
Sbjct: 99 QSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMF 158
Query: 65 ------------------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106
M+ KDV+T +AL+ A G + + EM+ G++ + +
Sbjct: 159 HMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIV 218
Query: 107 TFVGVLVACSHAGLVDERISHFN 129
++ G+L + +G E + F
Sbjct: 219 SWNGILSGFNRSGYHKEAVVMFQ 241
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 274 bits (700), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 134/309 (43%), Positives = 191/309 (61%), Gaps = 24/309 (7%)
Query: 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISH 127
+D ++ T++I+ LA G +ALE F M + G++PD IT+VGV AC+HAGLV++ +
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537
Query: 128 FNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHD 187
F++M + I P++ HY C+V + GRAG + +A+E I+ MP+ D G LL ACR+H
Sbjct: 538 FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHK 597
Query: 188 NLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILI 247
N++ + AA++LL L P+N G+Y L+N YS+ KW++ +IR+ M + +KK G I
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Query: 248 EVDGVVH------------------------EFVKAGFVPNKSEVLFDMDEEEKETALNL 283
EV VH E K G+VP+ + VL D++EE KE L
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRH 717
Query: 284 HTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNIISKVYNRETVVMDRNRFHHFKN 343
H+EKLAI FGL+S +RI+KNLRVCNDCHTA ISK+ RE +V D RFHHFK+
Sbjct: 718 HSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKD 777
Query: 344 GSCSCKDFW 352
G CSC+D+W
Sbjct: 778 GFCSCRDYW 786
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/398 (36%), Positives = 222/398 (55%), Gaps = 47/398 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y ++ EA+ +F E+ +K + D +++ S + AC +G+LE ++ Y+ + + D
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDD 357
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V + AL +DV+ +A+IV + G+ +A+ + M+
Sbjct: 358 VFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMER 417
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
GV P+ +TF+G+L+AC+H+G+V E FN M++ + I P +HY C++ +LGRAG +
Sbjct: 418 GGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLD 476
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+A E+IK MP+ V G LL AC+ H ++E E AAQQL + P N G YV LSN Y+
Sbjct: 477 QAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYA 536
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEF---------------------- 256
++R W +V +R M E+ + K GC +EV G + F
Sbjct: 537 AARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIES 596
Query: 257 --VKAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCND 314
+ GFV NK L D+++EE E L H+E++AI +GL+S G +RI KNLR C +
Sbjct: 597 RLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVN 656
Query: 315 CHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
CH AT +ISK+ +RE VV D NRFHHFK+G CSC D+W
Sbjct: 657 CHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 27/192 (14%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y ++ ++ALL++ +Q ++ D T LL AC+ L L++G ++H + + + D
Sbjct: 94 YSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 153
Query: 61 V------------------------GLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEM 96
V GL + + +++ TA++ A G+ +ALE F +M
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213
Query: 97 QIRGVKPDAITFVGVLVACS-HAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155
+ VKPD + V VL A + L R H +++ I P + L + + G
Sbjct: 214 RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCG 271
Query: 156 RIAKAEELIKNM 167
++A A+ L M
Sbjct: 272 QVATAKILFDKM 283
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 82/182 (45%), Gaps = 23/182 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y ++ EAL +F +++ + D V +VS+L A T L L+ G +H ++K +E++
Sbjct: 197 YAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256
Query: 61 VGLGMALK----------------------DVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
L ++L +++ A+I A G +A++ F+EM
Sbjct: 257 PDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN 316
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
+ V+PD I+ + AC+ G +++ S + + + R + L+ + + G +
Sbjct: 317 KDVRPDTISITSAISACAQVGSLEQARSMYEYVG-RSDYRDDVFISSALIDMFAKCGSVE 375
Query: 159 KA 160
A
Sbjct: 376 GA 377
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 214/398 (53%), Gaps = 46/398 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y +S +E + LF ++ + L D+ ++V L +C LGAL++G W I + +
Sbjct: 288 YASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTN 347
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ + AL KD++ + A I LA G + F + +
Sbjct: 348 LFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEK 407
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
G+ PD TF+G+L C HAGL+ + + FN +S Y ++ ++EHYGC+V + GRAG +
Sbjct: 408 LGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLD 467
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
A LI +MPM + V G LL CR+ + + AE ++L+ L P N G+YV LSN YS
Sbjct: 468 DAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYS 527
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVK-------------------- 258
+W + +R++M ++ +KK PG IE++G VHEF+
Sbjct: 528 VGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGN 587
Query: 259 ----AGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCND 314
GFVP V FD++EEEKE L H+EKLA+ GL+S G +IR++KNLRVC D
Sbjct: 588 EMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGD 647
Query: 315 CHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
CH +ISK+ RE VV D NRFH F NGSCSC D+W
Sbjct: 648 CHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYI----MKKN 56
Y EA+ LF+++ G+ D +V +L AC H+G L+ G W+ Y+ M+KN
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKN 246
Query: 57 IEVDVGL------------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V L M KD++T + +I A + +E F +M
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQ 306
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
+KPD + VG L +C+ G +D +L+ +++ ++ L+ + + G +A
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGEWGISLI-DRHEFLTNLFMANALIDMYAKCGAMA 365
Query: 159 KAEELIKNM 167
+ E+ K M
Sbjct: 366 RGFEVFKEM 374
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 23/189 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
+V + E L LF ++ GL T +L ACT + ++G+ LH ++K D
Sbjct: 86 FVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHD 145
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V +L + V+T TAL G+ +A++ F +M
Sbjct: 146 VAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVE 205
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
GVKPD+ V VL AC H G +D M E + S LV + + G++
Sbjct: 206 MGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVR-TTLVNLYAKCGKME 264
Query: 159 KAEELIKNM 167
KA + +M
Sbjct: 265 KARSVFDSM 273
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 267 bits (682), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 147/393 (37%), Positives = 224/393 (56%), Gaps = 48/393 (12%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL 67
EEAL +F + +G++ + VT SLL A + L L+ G H +++++ + L +L
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL 295
Query: 68 KDV----------------------MTLTALIVVLAMCGQGNKALEYFYEMQI-RGVKPD 104
D+ ++ A++V + G G + LE F M+ + VKPD
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355
Query: 105 AITFVGVLVACSHAGLVDERISHFN-LMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEEL 163
A+T + VL CSH + D ++ F+ +++ +YG +P EHYGC+V +LGRAGRI +A E
Sbjct: 356 AVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEF 415
Query: 164 IKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW 223
IK MP VLG LLGACR+H +++ E ++L+E+ P+N G+YVILSN Y+S+ +W
Sbjct: 416 IKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRW 475
Query: 224 KKVKRIRELMAERNIKKPPGCILIEVDGVVHEF------------------------VKA 259
V +R +M ++ + K PG I+ + +H F +A
Sbjct: 476 ADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQA 535
Query: 260 GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTAT 319
G+VP+ S VL+D+DEE+KE L H+EKLA+TFGL++ G+ IR+ KNLR+C DCH
Sbjct: 536 GYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFA 595
Query: 320 NIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
I SKV+ RE + D+NRFH +G CSC D+W
Sbjct: 596 KIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + EAL +F E+ ++ T ++L +C L +G +H I+K N +
Sbjct: 128 YSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSH 187
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ +G +L +DV++ TA+I A G +ALE F+ +
Sbjct: 188 IFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHS 247
Query: 99 RGVKPDAITFVGVLVACSHAGLVDE-RISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
G+ P+ +T+ +L A S L+D + +H +++ + +++ L+ + + G +
Sbjct: 248 EGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNL 305
Query: 158 AKAEELIKNMP 168
+ A L NMP
Sbjct: 306 SYARRLFDNMP 316
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 65 MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHA-GLVDE 123
M K+V++ TA+I + G ++AL F EM KP+ TF VL +C A GL
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLG 172
Query: 124 RISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP 168
+ H ++ K+ I L+ + +AG+I +A E+ + +P
Sbjct: 173 KQIHGLIV--KWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
>sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990
OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
Length = 534
Score = 266 bits (681), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 215/399 (53%), Gaps = 50/399 (12%)
Query: 1 YVEDSACEEALLLFRE-VQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV 59
YV + EEAL + + + +K + S L AC LG L W+H ++ IE+
Sbjct: 139 YVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIEL 198
Query: 60 DVGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQ 97
+ L AL DV A+I A G +A+ F EM+
Sbjct: 199 NAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEME 258
Query: 98 IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
V PD+ITF+G+L CSH GL++E +F LMS ++ I+P +EHYG +V +LGRAGR+
Sbjct: 259 AEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRV 318
Query: 158 AKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217
+A ELI++MP+ D + LL + R + N E E A Q L + G YV+LSN Y
Sbjct: 319 KEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKA---KSGDYVLLSNIY 375
Query: 218 SSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEF---------VKA--------- 259
SS++KW+ +++RELM++ I+K G +E G++H F KA
Sbjct: 376 SSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLI 435
Query: 260 ------GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
GFV + VL D+ EEEKE LN H+EKLA+ + ++ PG IRI KN+R+C+
Sbjct: 436 QKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCS 495
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH +SK+ NR ++ DR RFH F++G CSC+D+W
Sbjct: 496 DCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 219/391 (56%), Gaps = 48/391 (12%)
Query: 10 ALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDV-----GLG 64
AL F ++ + D T+VS+L AC LG+LE+G ++ K+ I+ ++ L
Sbjct: 194 ALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLD 253
Query: 65 MALK-----------------DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT 107
M LK +V++ + +IV AM G +AL F MQ G++P+ +T
Sbjct: 254 MHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVT 313
Query: 108 FVGVLVACSHAGLVDERISHFNLM--SEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIK 165
F+GVL ACSHAGLV+E +F+LM S + P EHY C+V +LGR+G + +A E IK
Sbjct: 314 FLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIK 373
Query: 166 NMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225
MP+ D + G LLGAC +H ++ ++ A L+E PD G +V+LSN Y+++ KW
Sbjct: 374 KMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDC 433
Query: 226 VKRIRELMAERNIKKPPGCILIEVDGVVHEF------------------------VKAGF 261
V ++R M + KK +E +G +H F K G+
Sbjct: 434 VDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGY 493
Query: 262 VPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNI 321
VP+ V D++ EEKE +L+ H+EKLAI FGL+ PG IR++KNLR C+DCH +
Sbjct: 494 VPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKF 553
Query: 322 ISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+S + + E ++ D+NRFHHF+NG CSCK+FW
Sbjct: 554 VSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKN---- 56
YV + E+LLL+++++ G+ D+ T ++ A + LG G LH +++K
Sbjct: 84 YVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCL 143
Query: 57 -------IEVDVGLG-----------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ + + G M +KD++ A + V G ALEYF +M
Sbjct: 144 GIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCA 203
Query: 99 RGVKPDAITFVGVLVACSHAG 119
V+ D+ T V +L AC G
Sbjct: 204 DAVQFDSFTVVSMLSACGQLG 224
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 265 bits (678), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 145/392 (36%), Positives = 221/392 (56%), Gaps = 40/392 (10%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWL-----------H 49
Y ++ + L L+ +++ G+ D T+VS+L +C HLGA ++G + +
Sbjct: 232 YSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPN 291
Query: 50 PYIMKKNIEVDVGLG-----------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
++ +I + G M +K +++ TA+I M G G L F +M
Sbjct: 292 VFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIK 351
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
RG++PD FV VL ACSH+GL D+ + F M +Y + P EHY CLV +LGRAGR+
Sbjct: 352 RGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLD 411
Query: 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218
+A E I++MP+ D V G LLGAC+IH N++ AE A +++E P+N G YV++SN YS
Sbjct: 412 EAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYS 471
Query: 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKE 278
S+ + + RIR +M ER +K PG +E G VH F+ ++E + M +E +
Sbjct: 472 DSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELET 531
Query: 279 TALNL------------------HTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATN 320
+ + L H+E+LAI FG+++ +PG I +IKNLRVC DCH
Sbjct: 532 SVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLK 591
Query: 321 IISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+SK+ +R+ VV D +RFH+FK+G CSCKD+W
Sbjct: 592 QVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y +S +A +FR ++ G++ D VTM+ L+ CT L +G LH +K ++ +
Sbjct: 131 YTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSE 190
Query: 61 VGL----------------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V + M +K ++T A+I + G LE + +M+
Sbjct: 191 VAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKS 250
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISH-FNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
GV PD T V VL +C+H G ++I H + E G P++ + + R G +
Sbjct: 251 SGVCPDPFTLVSVLSSCAHLGA--KKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNL 308
Query: 158 AKAEELIKNMPM 169
AKA + MP+
Sbjct: 309 AKARAVFDIMPV 320
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 265 bits (676), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 220/399 (55%), Gaps = 47/399 (11%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y+++ + AL +FR++ G+ ++M+ + AC+ L +L +G H Y +K +E D
Sbjct: 572 YLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDD 631
Query: 61 VGL----------------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ G+ K + A+I+ + G +A++ F EMQ
Sbjct: 632 AFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQR 691
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
G PD +TF+GVL AC+H+GL+ E + + + M +G++P+++HY C++ +LGRAG++
Sbjct: 692 TGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLD 751
Query: 159 KAEELI-KNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217
KA ++ + M D + LL +CRIH NLE E+ A +L EL P+ +YV+LSN Y
Sbjct: 752 KALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLY 811
Query: 218 SSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV-------------------- 257
+ KW+ V+++R+ M E +++K GC IE++ V FV
Sbjct: 812 AGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILE 871
Query: 258 ----KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
K G+ P+ V D+ EEEK L H+EKLA+T+GL+ G IR+ KNLR+C
Sbjct: 872 MKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICV 931
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
DCH A +ISKV RE VV D RFHHFKNG CSC D+W
Sbjct: 932 DCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 16 EVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGL------------ 63
+++ GL D T+ SLL AC+ L +L +G +H +I++ +E D+ +
Sbjct: 486 QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 545
Query: 64 ----------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLV 113
M K +++ +I G ++AL F +M + G++ I+ + V
Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 605
Query: 114 ACS 116
ACS
Sbjct: 606 ACS 608
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 264 bits (675), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 205/375 (54%), Gaps = 47/375 (12%)
Query: 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMK----------KNIEVD-------------V 61
+ T+ L+AC L AL +G +H Y ++ N +D V
Sbjct: 476 NAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLV 535
Query: 62 GLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLV 121
M K+ +T T+L+ M G G +AL F EM+ G K D +T + VL ACSH+G++
Sbjct: 536 FDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMI 595
Query: 122 DERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLG 181
D+ + +FN M +G+ P EHY CLV +LGRAGR+ A LI+ MPM V L
Sbjct: 596 DQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLS 655
Query: 182 ACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241
CRIH +E E AA+++ EL ++ GSY +LSN Y+++ +WK V RIR LM + +KK
Sbjct: 656 CCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKR 715
Query: 242 PGCILIE-VDGVVHEFV-----------------------KAGFVPNKSEVLFDMDEEEK 277
PGC +E + G FV G+VP L D+D+EEK
Sbjct: 716 PGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEK 775
Query: 278 ETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNIISKVYNRETVVMDRNR 337
+ L H+EKLA+ +G+++ G IRI KNLRVC DCHTA +S++ + + ++ D +R
Sbjct: 776 DDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSR 835
Query: 338 FHHFKNGSCSCKDFW 352
FHHFKNGSCSCK +W
Sbjct: 836 FHHFKNGSCSCKGYW 850
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE-- 58
Y + EAL + R++ G+ ++VT++S+L C +GAL G +H Y +K I+
Sbjct: 340 YAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLR 399
Query: 59 -----------------------VDVGLGM------ALKDVMTLTALIVVLAMCGQGNKA 89
VD M +DV+T T +I + G NKA
Sbjct: 400 KNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459
Query: 90 LEYFYEM--QIRGVKPDAITFVGVLVAC-SHAGL-VDERISHFNLMSEKYGIRPSIEHYG 145
LE EM + +P+A T LVAC S A L + ++I + L +++ + + +
Sbjct: 460 LELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSN-- 517
Query: 146 CLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAA 192
CL+ + + G I+ A + NM MA + L+ +H E A
Sbjct: 518 CLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMHGYGEEA 563
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 24/154 (15%)
Query: 10 ALLLFREVQHK-GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLG---- 64
AL +F + ++ G D +T+V++L C LG +G LH + + + ++ +G
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271
Query: 65 ------------------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106
M++KDV++ A++ + G+ A+ F +MQ +K D +
Sbjct: 272 DMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVV 331
Query: 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS 140
T+ + + GL E + M GI+P+
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSS-GIKPN 364
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 28/192 (14%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y ++ + L LF + T D T + AC + ++ G H + +
Sbjct: 102 YGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISN 161
Query: 61 VGLG----------------------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V +G M++ DV++ ++I A G+ ALE F M
Sbjct: 162 VFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTN 221
Query: 99 R-GVKPDAITFVGVLVACSHAGL--VDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155
G +PD IT V VL C+ G + +++ F + SE + ++ CLV + + G
Sbjct: 222 EFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSE---MIQNMFVGNCLVDMYAKCG 278
Query: 156 RIAKAEELIKNM 167
+ +A + NM
Sbjct: 279 MMDEANTVFSNM 290
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL 67
EEAL +F E++ G D VT++ +L AC+H G ++ GM Y + V G
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGM---EYFNRMKTVFGVSPGPE- 616
Query: 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD 122
L+ +L G+ N AL EM + +P + +V L C G V+
Sbjct: 617 ----HYACLVDLLGRAGRLNAALRLIEEMPM---EPPPVVWVAFLSCCRIHGKVE 664
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + +EA +F + K D V+ +++ + +G E + L + ++ I++D
Sbjct: 274 YAKCGMMDEANTVFSNMSVK----DVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMD 329
Query: 61 VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG 119
V +T +A I A G G +AL +M G+KP+ +T + VL C+ G
Sbjct: 330 V---------VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVG 379
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/384 (37%), Positives = 217/384 (56%), Gaps = 47/384 (12%)
Query: 16 EVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL-------- 67
+++ + D T + L C L A +G +H +++ E ++ +G AL
Sbjct: 499 QMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCG 558
Query: 68 --------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLV 113
+DV+T T +I M G+G KALE F +M+ G+ PD++ F+ ++
Sbjct: 559 CLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIY 618
Query: 114 ACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDH 173
ACSH+GLVDE ++ F M Y I P IEHY C+V +L R+ +I+KAEE I+ MP+ D
Sbjct: 619 ACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDA 678
Query: 174 FVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELM 233
+ +L ACR ++E AER +++++EL PD+ G ++ SN Y++ RKW KV IR+ +
Sbjct: 679 SIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSL 738
Query: 234 AERNIKKPPGCILIEVDGVVHEF------------------------VKAGFVPNKSEVL 269
+++I K PG IEV VH F K G++P+ EV
Sbjct: 739 KDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVS 798
Query: 270 FDM-DEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNIISKVYNR 328
++ +EEEK + H+E+LAI FGL++ PG ++++KNLRVC DCH T +ISK+ R
Sbjct: 799 QNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGR 858
Query: 329 ETVVMDRNRFHHFKNGSCSCKDFW 352
E +V D NRFH FK+G+CSCKD W
Sbjct: 859 EILVRDANRFHLFKDGTCSCKDRW 882
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL 67
E+AL F +++ G+ D V ++++ AC+H G ++ G+ MK + ++D
Sbjct: 592 EKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEK-MKTHYKID------- 643
Query: 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD--ERI 125
+ ++ +L+ + +KA E+ M I KPDA + VL AC +G ++ ER+
Sbjct: 644 PMIEHYACVVDLLSRSQKISKAEEFIQAMPI---KPDASIWASVLRACRTSGDMETAERV 700
Query: 126 SH 127
S
Sbjct: 701 SR 702
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL- 67
EAL + +++ ++ DK T S++ AC L E+G ++ I+ E D+ +G AL
Sbjct: 89 EALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALV 148
Query: 68 ---------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106
+D+++ +LI + G +ALE ++E++ + PD+
Sbjct: 149 DMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSF 208
Query: 107 TFVGVLVA 114
T VL A
Sbjct: 209 TVSSVLPA 216
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y++ EA+ LF+ + D +T + L+ T L L+ G LH +K I +D
Sbjct: 383 YIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICID 442
Query: 61 VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG 119
+ + ALI + A CG+ +L+ F M D +T+ V+ AC G
Sbjct: 443 LSVS---------NALIDMYAKCGEVGDSLKIFSSMGT----GDTVTWNTVISACVRFG 488
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISH 127
K+V ++I + G +ALE++ +++ V PD TF V+ AC AGL D +
Sbjct: 69 KNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKAC--AGLFDAEMG- 125
Query: 128 FNLMSEK---YGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACR 184
+L+ E+ G + LV + R G + +A ++ MP+ D L+
Sbjct: 126 -DLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLISGYS 183
Query: 185 IHDNLEAAERAAQQLLE--LLPDN 206
H E A +L ++PD+
Sbjct: 184 SHGYYEEALEIYHELKNSWIVPDS 207
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 29/238 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK------ 54
Y++ EE++ +F E + D +T+ S+L AC HL L + +++ Y++K
Sbjct: 283 YLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLE 341
Query: 55 ---KNIEVDVGL-------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+NI +DV M KD ++ ++I G +A++ F M I
Sbjct: 342 STVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMI 401
Query: 99 RGVKPDAITFVGVL-VACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
+ D IT++ ++ V+ A L + H N + K GI + L+ + + G +
Sbjct: 402 MEEQADHITYLMLISVSTRLADLKFGKGLHSNGI--KSGICIDLSVSNALIDMYAKCGEV 459
Query: 158 AKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLL--ELLPDNGGSYVIL 213
+ ++ +M D ++ AC + + Q+ E++PD V L
Sbjct: 460 GDSLKIFSSMGTG-DTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTL 516
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 215/391 (54%), Gaps = 46/391 (11%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL 67
EEAL +F + +G+ + T S + A + ++ G +H I K + + + AL
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733
Query: 68 ----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105
K+ ++ A+I + G G++AL+ F +M V+P+
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 793
Query: 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIK 165
+T VGVL ACSH GLVD+ I++F M+ +YG+ P EHY C+V +L RAG +++A+E I+
Sbjct: 794 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 853
Query: 166 NMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225
MP+ D V LL AC +H N+E E AA LLEL P++ +YV+LSN Y+ S+KW
Sbjct: 854 EMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDA 913
Query: 226 VKRIRELMAERNIKKPPGCILIEVDGVVHEFV------------------------KAGF 261
R+ M E+ +KK PG IEV +H F + G+
Sbjct: 914 RDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGY 973
Query: 262 VPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNI 321
V + +L ++ E+K+ + +H+EKLAI+FGL+S V I ++KNLRVCNDCH
Sbjct: 974 VQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKF 1033
Query: 322 ISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+SKV NRE +V D RFHHF+ G+CSCKD+W
Sbjct: 1034 VSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 29/226 (12%)
Query: 7 CE-EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGL-- 63
CE EA+ LF ++ G+ S+L AC + +LE+G LH ++K D +
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCN 327
Query: 64 --------------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP 103
M+ +D +T LI L+ CG G KA+E F M + G++P
Sbjct: 328 ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEP 387
Query: 104 DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEEL 163
D+ T ++VACS G + R + + K G + + G L+ + + I A +
Sbjct: 388 DSNTLASLVVACSADGTL-FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 446
Query: 164 IKNMPMALDHFVLGG-LLGACRIHDNLEAAERAAQQLL--ELLPDN 206
+ +++ VL +L A + D+L + R +Q+ E++P+
Sbjct: 447 F--LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 28/246 (11%)
Query: 10 ALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV---------- 59
+ +FR++Q + + ++ T S+L C LG LE+G +H I+K N ++
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533
Query: 60 ------------DVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT 107
D+ + A KDV++ T +I +KAL F +M RG++ D +
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593
Query: 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167
+ AC+ + E + + G + LV + R G+I ++ L
Sbjct: 594 LTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES-YLAFEQ 651
Query: 168 PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG----GSYVILSNRYSSSRKW 223
A D+ L+ + N E A R ++ DN GS V ++ ++ ++
Sbjct: 652 TEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQG 711
Query: 224 KKVKRI 229
K+V +
Sbjct: 712 KQVHAV 717
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 23/184 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + + ++AL FR++ +G+ D+V + + + AC L AL+ G +H D
Sbjct: 566 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 625
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ AL D + AL+ G +AL F M
Sbjct: 626 LPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 685
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
G+ + TF + A S + + + + K G E L+ + + G I+
Sbjct: 686 EGIDNNNFTFGSAVKAASETANMKQG-KQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744
Query: 159 KAEE 162
AE+
Sbjct: 745 DAEK 748
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 26/194 (13%)
Query: 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHL-GALEVGMWLHPYIMKKNIEVDV 61
ED + +E + V+++G+ + T+ LL C G+L+ G LH I+K ++ +
Sbjct: 63 EDESFQEKRI--DSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNG 120
Query: 62 GLGMALKD----------------------VMTLTALIVVLAMCGQGNKALEYFYEMQIR 99
L L D + T +I LA + F M
Sbjct: 121 CLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSE 180
Query: 100 GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK 159
V P+ TF GVL AC + + + + G+R S L+ + R G +
Sbjct: 181 NVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL 240
Query: 160 AEELIKNMPMALDH 173
A + + + DH
Sbjct: 241 ARRVFDGLRLK-DH 253
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 262 bits (669), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 212/381 (55%), Gaps = 57/381 (14%)
Query: 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV-------DVGLGMALKD---------- 69
VT+ S+L AC G L VG W+H Y +KK + + DV +G AL D
Sbjct: 245 VTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDS 304
Query: 70 ------------VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH 117
V+T AL LAM G+G ++ F +M IR VKPD +TF VL ACSH
Sbjct: 305 SMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQM-IREVKPDDLTFTAVLSACSH 363
Query: 118 AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLG 177
+G+VDE F+ + YG+ P ++HY C+V +LGRAG I +AE L++ MP+ + VLG
Sbjct: 364 SGIVDEGWRCFHSL-RFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLG 422
Query: 178 GLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237
LLG+C +H +E AER ++L+++ P N +++SN Y + + +R + +R
Sbjct: 423 SLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRG 482
Query: 238 IKKPPGCILIEVDGVVHEFVK------------------------AGFVPNKSEVLF--D 271
I+K PG I V+ VH F AG+VP+ S ++ +
Sbjct: 483 IRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSE 542
Query: 272 MDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNIISKVYNRETV 331
D EEKE AL H+EKLA+ FGL+ P + + KNLR+C DCH+A I+SKVY+RE +
Sbjct: 543 GDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREII 602
Query: 332 VMDRNRFHHFKNGSCSCKDFW 352
+ DRNRFH FK GSCSC D+W
Sbjct: 603 IRDRNRFHQFKGGSCSCSDYW 623
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 261 bits (668), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 214/400 (53%), Gaps = 48/400 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGA-LEVGMWLHPYIMKKNIEV 59
Y + E A+ +F E+ G+ ++ T S+L C A + G H + +K ++
Sbjct: 469 YAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDS 528
Query: 60 DVGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQ 97
+ + AL KD+++ ++I A GQ KAL+ F EM+
Sbjct: 529 SLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMK 588
Query: 98 IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
R VK D +TF+GV AC+HAGLV+E +F++M I P+ EH C+V + RAG++
Sbjct: 589 KRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQL 648
Query: 158 AKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217
KA ++I+NMP + +L ACR+H E AA++++ + P++ +YV+LSN Y
Sbjct: 649 EKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMY 708
Query: 218 SSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA------------------ 259
+ S W++ ++R+LM ERN+KK PG IEV + F+
Sbjct: 709 AESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLS 768
Query: 260 ------GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313
G+ P+ S VL D+D+E KE L H+E+LAI FGL++ G + IIKNLRVC
Sbjct: 769 TRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCG 828
Query: 314 DCHTATNIISKVYNRETVVMDRNRFHHF-KNGSCSCKDFW 352
DCH +I+K+ RE VV D NRFHHF +G CSC DFW
Sbjct: 829 DCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 26/187 (13%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
++++ EEA+ LF E++ KG+ ++ T +L A + EV H ++K N E
Sbjct: 372 FLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEV----HAQVVKTNYERS 427
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+G AL KD++ +A++ A G+ A++ F E+
Sbjct: 428 STVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTK 487
Query: 99 RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158
G+KP+ TF +L C+ + F+ + K + S+ L+ + + G I
Sbjct: 488 GGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIE 547
Query: 159 KAEELIK 165
AEE+ K
Sbjct: 548 SAEEVFK 554
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y +S +E L LF +Q++G + T + L G G+ +H ++K ++
Sbjct: 169 YARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT 228
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
+ + +L K V+T ++I A G +AL FY M++
Sbjct: 229 IPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL 288
Query: 99 RGVKPDAITFVGVLVACSH 117
V+ +F V+ C++
Sbjct: 289 NYVRLSESSFASVIKLCAN 307
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 260 bits (665), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 225/398 (56%), Gaps = 49/398 (12%)
Query: 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGM-WLHPYIMKKNIEVD 60
V + EA+ L++ ++ +G+ +VT+V+ L AC+HLG ++ G H Y I +
Sbjct: 186 VSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVSN 245
Query: 61 VGLGM------------------ALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102
+ M K V+T +I A+ G+ ++ALE F +++ G+K
Sbjct: 246 AAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIK 305
Query: 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162
PD ++++ L AC HAGLV+ +S FN M+ K G+ +++HYGC+V +L RAGR+ +A +
Sbjct: 306 PDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERNMKHYGCVVDLLSRAGRLREAHD 364
Query: 163 LIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK 222
+I +M M D + LLGA I+ ++E AE A++++ E+ +N G +V+LSN Y++ +
Sbjct: 365 IICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGR 424
Query: 223 WKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKA----------------------- 259
WK V R+R+ M + +KK PG IE G +HEF +
Sbjct: 425 WKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIRE 484
Query: 260 -GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGV----LIRIIKNLRVCND 314
G+V VL D+ EEEKE AL H+EKLA+ +GL+ M G +R+I NLR+C D
Sbjct: 485 DGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLM-MMDGADEESPVRVINNLRICGD 543
Query: 315 CHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
CH ISK+Y RE +V DR RFH FK+GSCSC+DFW
Sbjct: 544 CHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 6 ACEEALL------LFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEV 59
AC AL L ++ +GL+ D + +LL A + G L + Y +
Sbjct: 118 ACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDL-----ISAYKLFDE--- 169
Query: 60 DVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG 119
M ++DV + ALI L + ++A+E + M+ G++ +T V L ACSH G
Sbjct: 170 -----MPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLG 224
Query: 120 LVDE 123
V E
Sbjct: 225 DVKE 228
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 223/392 (56%), Gaps = 47/392 (11%)
Query: 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHP----------------- 50
+AL +++ + ++G+ GD T+V+LL +C H+ AL +G+ LH
Sbjct: 190 NQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNAL 249
Query: 51 ---YIMKKNIEVDVGL--GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105
Y ++E +G+ GM +DV+T ++I+ + G G +A+ +F +M GV+P+A
Sbjct: 250 IDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNA 309
Query: 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIK 165
ITF+G+L+ CSH GLV E + HF +MS ++ + P+++HYGC+V + GRAG++ + E+I
Sbjct: 310 ITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIY 369
Query: 166 NMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225
D + LLG+C+IH NLE E A ++L++L N G YV++++ YS++ +
Sbjct: 370 ASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQA 429
Query: 226 VKRIRELMAERNIKKPPGCILIEVDGVVHEFV--------------KAGFVPNKSEVLFD 271
+R+L+ +++ PG IE+ VH+FV + G V N++ +
Sbjct: 430 FASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGY 489
Query: 272 MDEEEKETALNL-----------HTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATN 320
E+ TA L H+EKLAI +GL+ G +RI KNLRVC DCH+ T
Sbjct: 490 KPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTK 549
Query: 321 IISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+SK +NRE +V DR RFHHF +G CSC D+W
Sbjct: 550 YVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 65 MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD 122
M ++D+++ +I + G N+AL + M GV D+ T V +L +C+H ++
Sbjct: 168 MPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALN 225
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 208/391 (53%), Gaps = 47/391 (12%)
Query: 9 EALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGL----- 63
E LFR++Q + + T+ ++L AC+ + AL G +H I+K + DV L
Sbjct: 320 EMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLM 379
Query: 64 -----------------GMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106
M KD+ + ++ A+ G + + F M GV PD I
Sbjct: 380 DMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGI 439
Query: 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKN 166
TFV +L CS GL + +S F M ++ + P++EHY CLV ILGRAG+I +A ++I+
Sbjct: 440 TFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIET 499
Query: 167 MPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKV 226
MP + G LL +CR+H N+ E AA++L L P N G+YV++SN Y+ ++ W V
Sbjct: 500 MPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNV 559
Query: 227 KRIRELMAERNIKKPPGCILIEVDGVVHEFV-------------------------KAGF 261
+IRE+M +R +KK GC ++V + FV K+G+
Sbjct: 560 DKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGY 619
Query: 262 VPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNI 321
PN S VL D+DEE K + H+E+LA T+ L+ GV IRI KNLRVC DCH+ I
Sbjct: 620 SPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKI 679
Query: 322 ISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+S+V R V+ D RFHHF +G CSCKD+W
Sbjct: 680 VSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 29/238 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
Y + + +AL+++ ++ + ++ L AC L L VG +H I+K+ +VD
Sbjct: 211 YSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVD 270
Query: 61 ----------------------VGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V GM+ ++V+T +LI VL+ + ++ F +MQ
Sbjct: 271 QVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQE 330
Query: 99 RGVKPDAITFVGVLVACSH-AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
+ T +L ACS A L+ + H ++ K +P + L+ + G+ G +
Sbjct: 331 EMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKE--KPDVPLLNSLMDMYGKCGEV 388
Query: 158 AKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE--LLPDNGGSYVIL 213
+ + M + D +L I+ N+E + ++E + PD G ++V L
Sbjct: 389 EYSRRVFDVM-LTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPD-GITFVAL 444
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 258 bits (659), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 224/402 (55%), Gaps = 51/402 (12%)
Query: 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVD 60
+ ++ +EA+ +F +++ G D T VSLL AC GA+ +G W+H YI+ + ++++
Sbjct: 183 FEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLN 242
Query: 61 VGLGMAL----------------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98
V LG AL +V TA+I G G +A+E F +M+
Sbjct: 243 VKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMED 302
Query: 99 R-GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157
G P+ +TFV VL AC+HAGLV+E S + M++ Y + P +EH+ C+V +LGRAG +
Sbjct: 303 DCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFL 362
Query: 158 AKAEELIKNMPM---ALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214
+A + I + A + +LGAC++H N + A++L+ L PDN G +V+LS
Sbjct: 363 DEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLS 422
Query: 215 NRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVD----------------GVVHEFVK 258
N Y+ S K +V IR+ M N++K G +IEV+ G ++ +++
Sbjct: 423 NIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLE 482
Query: 259 A--------GFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLR 310
G+ P EV+ ++EEEKE AL H+EKLA+ FGL+ + V I I+KNLR
Sbjct: 483 TLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLR 541
Query: 311 VCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352
+C DCH+A IS V NR+ V D+ RFHHF+NGSCSC D+W
Sbjct: 542 ICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 25/177 (14%)
Query: 14 FREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL------ 67
+R + ++ T S++ +C L AL +G +H + + +D + AL
Sbjct: 95 YRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154
Query: 68 ----------------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGV 111
K ++ +L+ G ++A++ FY+M+ G +PD+ TFV +
Sbjct: 155 CGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSL 214
Query: 112 LVACSHAGLVD-ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167
L AC+ G V H ++SE G+ +++ L+ + R G + KA E+ M
Sbjct: 215 LSACAQTGAVSLGSWVHQYIISE--GLDLNVKLGTALINLYSRCGDVGKAREVFDKM 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,607,934
Number of Sequences: 539616
Number of extensions: 5288959
Number of successful extensions: 16952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 14320
Number of HSP's gapped (non-prelim): 1579
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)