Query 048142
Match_columns 352
No_of_seqs 379 out of 2882
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3E-75 6.6E-80 566.4 36.6 352 1-352 300-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3.9E-69 8.6E-74 535.0 37.7 348 1-350 465-857 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8.6E-47 1.9E-51 371.8 23.5 318 1-331 447-786 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-46 4E-51 369.4 23.7 263 1-277 482-750 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.2E-45 2.7E-50 359.2 26.5 339 1-345 199-581 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 2E-46 4.2E-51 372.8 16.6 322 1-345 263-677 (857)
7 PRK11788 tetratricopeptide rep 99.8 3.7E-18 8E-23 156.0 21.0 258 3-275 47-311 (389)
8 PRK11788 tetratricopeptide rep 99.8 9.7E-18 2.1E-22 153.2 23.6 261 2-278 80-350 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 7.4E-17 1.6E-21 162.2 23.9 251 2-272 578-829 (899)
10 PF14432 DYW_deaminase: DYW fa 99.8 3.1E-19 6.6E-24 131.4 4.2 59 278-342 57-116 (116)
11 TIGR02917 PEP_TPR_lipo putativ 99.7 3.4E-16 7.4E-21 157.4 24.5 218 2-235 612-831 (899)
12 PRK15174 Vi polysaccharide exp 99.6 4.8E-14 1E-18 136.2 22.7 251 3-273 88-345 (656)
13 PRK15174 Vi polysaccharide exp 99.6 3E-13 6.5E-18 130.7 25.6 254 2-275 121-381 (656)
14 PF13041 PPR_2: PPR repeat fam 99.6 1.1E-14 2.4E-19 91.1 6.8 50 68-117 1-50 (50)
15 TIGR00990 3a0801s09 mitochondr 99.6 3.2E-12 7E-17 123.5 27.2 253 4-275 307-571 (615)
16 PF13429 TPR_15: Tetratricopep 99.5 7.8E-15 1.7E-19 127.8 7.2 254 2-273 19-275 (280)
17 TIGR00990 3a0801s09 mitochondr 99.5 4.8E-12 1E-16 122.3 25.1 218 3-235 343-570 (615)
18 KOG4422 Uncharacterized conser 99.5 2.4E-12 5.3E-17 111.5 17.9 210 23-246 204-437 (625)
19 KOG4626 O-linked N-acetylgluco 99.5 6.6E-13 1.4E-17 119.8 14.9 213 4-233 231-448 (966)
20 TIGR02521 type_IV_pilW type IV 99.5 5.9E-11 1.3E-15 99.8 25.3 200 25-235 30-231 (234)
21 KOG4626 O-linked N-acetylgluco 99.5 1.5E-11 3.2E-16 111.2 22.3 206 1-223 296-506 (966)
22 PRK09782 bacteriophage N4 rece 99.5 6.5E-11 1.4E-15 117.8 27.0 215 5-237 490-707 (987)
23 PRK10747 putative protoheme IX 99.4 3.7E-11 7.9E-16 109.7 22.0 245 4-270 131-385 (398)
24 PF13429 TPR_15: Tetratricopep 99.4 8.5E-13 1.8E-17 115.0 10.8 216 3-234 56-275 (280)
25 PRK11447 cellulose synthase su 99.4 3.4E-11 7.3E-16 124.1 24.0 251 3-273 281-556 (1157)
26 PF13041 PPR_2: PPR repeat fam 99.4 4.9E-13 1.1E-17 83.6 5.7 50 103-153 1-50 (50)
27 PRK11447 cellulose synthase su 99.4 1.3E-10 2.7E-15 119.9 25.7 258 3-274 363-699 (1157)
28 KOG1126 DNA-binding cell divis 99.4 2.3E-11 5E-16 110.9 17.2 223 6-236 334-586 (638)
29 PRK09782 bacteriophage N4 rece 99.4 3.8E-10 8.2E-15 112.4 26.5 219 3-238 521-742 (987)
30 TIGR00540 hemY_coli hemY prote 99.4 9.1E-11 2E-15 107.6 20.4 224 33-270 160-394 (409)
31 KOG4422 Uncharacterized conser 99.4 2.2E-10 4.7E-15 99.6 21.0 227 3-234 127-383 (625)
32 TIGR02521 type_IV_pilW type IV 99.3 8.6E-10 1.9E-14 92.7 23.0 188 2-202 42-232 (234)
33 KOG4318 Bicoid mRNA stability 99.3 1.3E-10 2.8E-15 109.0 16.5 227 12-247 11-276 (1088)
34 KOG1840 Kinesin light chain [C 99.3 5.5E-10 1.2E-14 102.5 20.3 229 1-234 209-477 (508)
35 PRK12370 invasion protein regu 99.3 1.5E-09 3.3E-14 103.3 24.2 212 5-235 275-501 (553)
36 PRK12370 invasion protein regu 99.3 3.4E-09 7.3E-14 101.0 25.4 214 4-238 317-537 (553)
37 KOG1126 DNA-binding cell divis 99.3 3E-10 6.6E-15 103.7 16.9 200 25-239 420-623 (638)
38 PRK10049 pgaA outer membrane p 99.3 3E-09 6.6E-14 105.1 25.0 250 3-273 27-299 (765)
39 PRK10049 pgaA outer membrane p 99.2 9.9E-09 2.1E-13 101.5 25.8 219 8-236 213-456 (765)
40 KOG1155 Anaphase-promoting com 99.2 4.8E-09 1E-13 92.2 20.3 159 72-235 332-494 (559)
41 PRK10747 putative protoheme IX 99.2 8.7E-09 1.9E-13 94.1 23.1 219 2-235 164-389 (398)
42 KOG2003 TPR repeat-containing 99.2 8.7E-09 1.9E-13 90.4 21.4 206 3-222 502-709 (840)
43 PRK11189 lipoprotein NlpI; Pro 99.2 1.8E-08 3.9E-13 88.3 22.7 216 4-238 39-267 (296)
44 KOG1840 Kinesin light chain [C 99.2 3.7E-09 8.1E-14 97.1 18.8 243 26-274 199-478 (508)
45 COG2956 Predicted N-acetylgluc 99.1 5E-08 1.1E-12 82.2 21.5 229 4-241 48-283 (389)
46 KOG1129 TPR repeat-containing 99.1 9.2E-09 2E-13 86.7 17.0 220 1-236 233-458 (478)
47 TIGR00540 hemY_coli hemY prote 99.1 5E-08 1.1E-12 89.6 22.7 217 3-234 165-397 (409)
48 COG3071 HemY Uncharacterized e 99.0 9.6E-08 2.1E-12 82.8 21.3 255 4-269 97-384 (400)
49 PRK11189 lipoprotein NlpI; Pro 99.0 1.6E-07 3.4E-12 82.3 22.5 193 2-212 75-275 (296)
50 PRK14574 hmsH outer membrane p 99.0 1.8E-07 3.9E-12 91.8 24.7 195 75-274 297-512 (822)
51 KOG0547 Translocase of outer m 98.9 1.5E-07 3.2E-12 83.6 18.5 215 4-234 339-564 (606)
52 PF12854 PPR_1: PPR repeat 98.9 1.7E-09 3.6E-14 61.0 4.0 32 136-167 2-33 (34)
53 COG3063 PilF Tfp pilus assembl 98.9 3.5E-07 7.5E-12 73.8 17.9 162 72-238 37-204 (250)
54 PF12854 PPR_1: PPR repeat 98.9 2.8E-09 6.1E-14 60.1 4.4 32 100-131 2-33 (34)
55 KOG1155 Anaphase-promoting com 98.9 6.5E-07 1.4E-11 79.1 20.4 244 6-270 242-490 (559)
56 KOG0547 Translocase of outer m 98.9 5.4E-07 1.2E-11 80.1 19.6 150 82-235 338-490 (606)
57 PRK14574 hmsH outer membrane p 98.9 1.2E-06 2.7E-11 86.0 24.0 189 28-231 37-227 (822)
58 COG3063 PilF Tfp pilus assembl 98.8 3.1E-06 6.7E-11 68.5 21.5 197 27-235 36-235 (250)
59 PF12569 NARP1: NMDA receptor- 98.8 4E-06 8.7E-11 78.1 25.3 259 2-273 15-332 (517)
60 KOG1070 rRNA processing protei 98.8 1.1E-06 2.4E-11 86.9 22.1 208 23-241 1454-1668(1710)
61 COG3071 HemY Uncharacterized e 98.8 1.6E-06 3.4E-11 75.4 20.5 227 3-241 165-395 (400)
62 KOG1173 Anaphase-promoting com 98.8 7.3E-07 1.6E-11 80.6 18.9 221 3-241 256-521 (611)
63 KOG1125 TPR repeat-containing 98.8 4.5E-07 9.8E-12 82.2 17.6 220 2-234 296-525 (579)
64 KOG2003 TPR repeat-containing 98.8 3.4E-06 7.4E-11 74.5 21.1 182 40-236 504-689 (840)
65 KOG1128 Uncharacterized conser 98.8 5.3E-07 1.2E-11 83.8 16.8 223 23-278 395-619 (777)
66 COG2956 Predicted N-acetylgluc 98.8 2.7E-06 5.9E-11 72.0 19.4 186 3-201 81-277 (389)
67 KOG2076 RNA polymerase III tra 98.8 2.9E-06 6.3E-11 80.7 21.6 202 27-242 140-351 (895)
68 PF04733 Coatomer_E: Coatomer 98.7 3.1E-07 6.8E-12 79.6 13.7 146 80-235 112-264 (290)
69 KOG2076 RNA polymerase III tra 98.7 3.4E-06 7.5E-11 80.2 21.0 222 4-234 254-510 (895)
70 KOG0495 HAT repeat protein [RN 98.7 1.7E-05 3.7E-10 73.2 23.5 237 72-324 586-825 (913)
71 TIGR03302 OM_YfiO outer membra 98.6 6.2E-06 1.3E-10 69.8 18.9 168 68-237 31-233 (235)
72 TIGR03302 OM_YfiO outer membra 98.6 1.2E-05 2.7E-10 67.9 20.2 167 25-204 32-234 (235)
73 cd05804 StaR_like StaR_like; a 98.6 3.1E-05 6.7E-10 69.9 23.8 87 112-200 121-213 (355)
74 TIGR00756 PPR pentatricopeptid 98.6 7.2E-08 1.6E-12 54.9 4.1 34 72-105 2-35 (35)
75 PLN02789 farnesyltranstransfer 98.6 3.6E-05 7.7E-10 67.8 22.5 201 4-219 50-267 (320)
76 PRK15179 Vi polysaccharide bio 98.5 3.9E-05 8.4E-10 74.3 22.1 169 68-247 84-256 (694)
77 KOG0495 HAT repeat protein [RN 98.5 0.00018 3.8E-09 66.8 24.9 218 4-236 563-782 (913)
78 KOG1128 Uncharacterized conser 98.5 5.6E-06 1.2E-10 77.2 15.1 202 4-235 411-615 (777)
79 PF13812 PPR_3: Pentatricopept 98.5 2.4E-07 5.1E-12 52.4 4.1 33 71-103 2-34 (34)
80 PRK10370 formate-dependent nit 98.5 3E-05 6.6E-10 63.5 17.8 148 77-238 23-175 (198)
81 KOG2002 TPR-containing nuclear 98.5 4.6E-06 1E-10 80.0 14.1 221 3-235 464-708 (1018)
82 KOG2002 TPR-containing nuclear 98.4 5.3E-05 1.1E-09 73.0 20.3 256 5-272 427-706 (1018)
83 KOG1129 TPR repeat-containing 98.4 2.1E-05 4.6E-10 66.9 15.6 158 74-236 227-387 (478)
84 PF04733 Coatomer_E: Coatomer 98.4 8.2E-06 1.8E-10 70.9 13.6 153 34-206 110-269 (290)
85 TIGR00756 PPR pentatricopeptid 98.4 6.2E-07 1.3E-11 50.9 4.5 34 208-241 1-34 (35)
86 cd05804 StaR_like StaR_like; a 98.4 0.00021 4.6E-09 64.4 23.0 198 26-235 6-214 (355)
87 PF12569 NARP1: NMDA receptor- 98.4 0.00031 6.8E-09 65.7 24.1 228 2-234 49-332 (517)
88 COG5010 TadD Flp pilus assembl 98.4 4E-05 8.7E-10 63.3 16.1 94 143-236 102-197 (257)
89 KOG1173 Anaphase-promoting com 98.4 4E-05 8.7E-10 69.7 17.4 201 21-235 239-483 (611)
90 PRK15359 type III secretion sy 98.4 2.7E-05 5.8E-10 60.4 14.5 105 108-215 27-134 (144)
91 PRK15359 type III secretion sy 98.4 1.5E-05 3.3E-10 61.8 13.1 99 137-237 22-122 (144)
92 PRK15179 Vi polysaccharide bio 98.4 7.9E-05 1.7E-09 72.3 20.4 132 101-235 82-216 (694)
93 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.2E-11 49.7 4.3 33 208-240 2-34 (34)
94 COG5010 TadD Flp pilus assembl 98.3 8.9E-05 1.9E-09 61.3 17.1 154 75-231 71-226 (257)
95 PRK10370 formate-dependent nit 98.3 0.0001 2.3E-09 60.4 16.8 115 38-167 51-170 (198)
96 KOG4318 Bicoid mRNA stability 98.3 4.9E-05 1.1E-09 72.6 16.5 208 1-222 35-286 (1088)
97 PLN02789 farnesyltranstransfer 98.3 0.00074 1.6E-08 59.5 22.9 195 28-236 39-250 (320)
98 PF01535 PPR: PPR repeat; Int 98.2 1.1E-06 2.4E-11 48.3 3.1 30 72-101 2-31 (31)
99 KOG1915 Cell cycle control pro 98.2 0.0004 8.8E-09 62.2 20.3 220 4-240 86-354 (677)
100 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.7E-05 1.7E-09 67.2 16.2 123 31-170 174-297 (395)
101 KOG1174 Anaphase-promoting com 98.2 0.00089 1.9E-08 59.1 21.8 122 112-237 341-501 (564)
102 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.4E-05 1.2E-09 68.1 14.4 122 108-234 172-295 (395)
103 COG4783 Putative Zn-dependent 98.2 0.00077 1.7E-08 60.7 21.1 160 68-233 272-434 (484)
104 KOG4340 Uncharacterized conser 98.2 0.00024 5.3E-09 59.9 16.7 206 20-242 4-213 (459)
105 KOG1915 Cell cycle control pro 98.2 0.0012 2.6E-08 59.2 21.7 165 68-236 320-500 (677)
106 KOG1125 TPR repeat-containing 98.1 0.00011 2.4E-09 67.1 15.2 215 36-270 295-522 (579)
107 KOG1070 rRNA processing protei 98.1 0.001 2.3E-08 66.8 22.6 213 3-231 1470-1695(1710)
108 COG4783 Putative Zn-dependent 98.1 0.00034 7.3E-09 62.9 17.7 116 80-200 316-435 (484)
109 KOG2376 Signal recognition par 98.1 0.00046 1E-08 63.3 18.3 210 2-239 23-256 (652)
110 TIGR02552 LcrH_SycD type III s 98.1 8.6E-05 1.9E-09 56.8 12.1 95 109-205 21-117 (135)
111 PF01535 PPR: PPR repeat; Int 98.1 4.4E-06 9.4E-11 45.9 3.5 31 208-238 1-31 (31)
112 TIGR02552 LcrH_SycD type III s 98.1 0.00035 7.6E-09 53.4 15.0 97 26-133 17-113 (135)
113 KOG3081 Vesicle coat complex C 98.1 0.0013 2.7E-08 54.8 18.4 149 77-235 115-270 (299)
114 KOG1174 Anaphase-promoting com 98.0 0.00051 1.1E-08 60.5 16.7 118 149-271 342-463 (564)
115 PF08579 RPM2: Mitochondrial r 98.0 0.00012 2.5E-09 52.6 10.5 81 72-153 27-116 (120)
116 PF09976 TPR_21: Tetratricopep 98.0 0.00069 1.5E-08 52.6 16.1 85 78-165 56-142 (145)
117 KOG3081 Vesicle coat complex C 98.0 0.0011 2.3E-08 55.2 17.5 194 68-273 70-269 (299)
118 PF09976 TPR_21: Tetratricopep 98.0 0.00089 1.9E-08 52.0 16.4 125 71-198 13-143 (145)
119 KOG3060 Uncharacterized conser 98.0 0.0008 1.7E-08 55.5 16.2 151 83-235 25-182 (289)
120 PRK14720 transcript cleavage f 98.0 0.001 2.2E-08 65.7 19.8 181 22-218 26-268 (906)
121 PF10037 MRP-S27: Mitochondria 98.0 0.00018 3.9E-09 65.2 13.5 134 13-154 50-186 (429)
122 PF06239 ECSIT: Evolutionarily 98.0 0.00032 6.9E-09 56.8 13.1 88 22-118 43-151 (228)
123 KOG4162 Predicted calmodulin-b 98.0 0.0009 1.9E-08 63.3 17.9 233 1-235 488-782 (799)
124 PF08579 RPM2: Mitochondrial r 98.0 0.00019 4.2E-09 51.5 10.4 81 28-117 27-116 (120)
125 cd00189 TPR Tetratricopeptide 97.9 0.00016 3.4E-09 50.6 10.1 92 144-235 3-96 (100)
126 PRK04841 transcriptional regul 97.9 0.0028 6.1E-08 64.7 22.8 229 3-237 503-761 (903)
127 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00037 8.1E-09 51.7 12.4 97 111-207 8-110 (119)
128 KOG3060 Uncharacterized conser 97.9 0.01 2.2E-07 49.3 20.8 191 4-207 25-225 (289)
129 PRK04841 transcriptional regul 97.8 0.0055 1.2E-07 62.6 23.1 263 3-272 464-757 (903)
130 KOG3785 Uncharacterized conser 97.8 0.0015 3.2E-08 56.6 15.6 126 75-203 364-491 (557)
131 PRK15363 pathogenicity island 97.8 0.0012 2.7E-08 50.9 13.7 96 141-236 35-132 (157)
132 KOG4340 Uncharacterized conser 97.8 0.0037 8.1E-08 53.0 17.4 192 2-199 155-372 (459)
133 KOG0624 dsRNA-activated protei 97.8 0.011 2.4E-07 51.2 20.4 223 2-238 117-372 (504)
134 KOG0985 Vesicle coat protein c 97.8 0.0034 7.4E-08 61.4 19.2 223 4-271 1061-1304(1666)
135 KOG3617 WD40 and TPR repeat-co 97.8 0.0018 3.9E-08 61.9 17.1 211 1-234 738-994 (1416)
136 cd00189 TPR Tetratricopeptide 97.8 0.00041 8.8E-09 48.4 10.4 92 73-167 3-94 (100)
137 KOG1156 N-terminal acetyltrans 97.8 0.011 2.5E-07 55.1 21.3 113 106-218 144-264 (700)
138 KOG1156 N-terminal acetyltrans 97.8 0.01 2.2E-07 55.4 21.0 101 138-238 366-470 (700)
139 KOG3616 Selective LIM binding 97.8 0.00086 1.9E-08 63.3 13.9 114 32-168 738-851 (1636)
140 PF12895 Apc3: Anaphase-promot 97.7 5.9E-05 1.3E-09 52.5 4.9 80 119-198 3-83 (84)
141 PF05843 Suf: Suppressor of fo 97.7 0.0022 4.8E-08 55.7 15.5 143 71-217 2-150 (280)
142 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0012 2.6E-08 48.9 12.2 96 142-237 3-106 (119)
143 PF12895 Apc3: Anaphase-promot 97.7 0.00013 2.7E-09 50.8 5.5 81 4-95 2-83 (84)
144 PF10037 MRP-S27: Mitochondria 97.6 0.00044 9.6E-09 62.7 10.1 105 5-118 80-186 (429)
145 KOG3616 Selective LIM binding 97.6 0.0021 4.6E-08 60.7 14.5 187 5-231 746-932 (1636)
146 KOG2047 mRNA splicing factor [ 97.6 0.037 8.1E-07 51.9 21.8 228 4-239 151-509 (835)
147 PLN03088 SGT1, suppressor of 97.6 0.0016 3.4E-08 58.7 13.2 84 4-98 15-98 (356)
148 PRK02603 photosystem I assembl 97.6 0.0069 1.5E-07 48.5 15.7 87 26-122 35-123 (172)
149 KOG2376 Signal recognition par 97.6 0.015 3.2E-07 53.9 19.0 226 2-232 186-516 (652)
150 PF05843 Suf: Suppressor of fo 97.6 0.0012 2.5E-08 57.4 11.8 131 27-167 2-133 (280)
151 KOG2047 mRNA splicing factor [ 97.6 0.007 1.5E-07 56.5 16.7 224 68-298 347-642 (835)
152 KOG4162 Predicted calmodulin-b 97.6 0.02 4.3E-07 54.6 19.8 209 14-234 311-540 (799)
153 PRK02603 photosystem I assembl 97.5 0.0037 8.1E-08 50.0 13.5 130 68-221 33-165 (172)
154 PRK15363 pathogenicity island 97.5 0.0062 1.3E-07 47.1 13.5 100 26-136 35-134 (157)
155 PRK10153 DNA-binding transcrip 97.5 0.0064 1.4E-07 57.4 16.1 60 174-234 421-480 (517)
156 KOG1914 mRNA cleavage and poly 97.4 0.068 1.5E-06 49.2 21.0 206 8-226 310-529 (656)
157 KOG3785 Uncharacterized conser 97.4 0.056 1.2E-06 47.2 19.6 195 3-219 34-231 (557)
158 PRK10153 DNA-binding transcrip 97.4 0.0089 1.9E-07 56.4 16.4 134 21-167 332-479 (517)
159 CHL00033 ycf3 photosystem I as 97.4 0.0026 5.6E-08 50.7 11.2 94 140-233 34-139 (168)
160 PF13414 TPR_11: TPR repeat; P 97.4 0.00075 1.6E-08 44.8 6.8 64 172-235 2-66 (69)
161 KOG3617 WD40 and TPR repeat-co 97.4 0.0077 1.7E-07 57.8 15.4 162 5-200 814-994 (1416)
162 CHL00033 ycf3 photosystem I as 97.4 0.0086 1.9E-07 47.7 13.8 95 26-128 35-136 (168)
163 PRK14720 transcript cleavage f 97.4 0.013 2.8E-07 58.2 17.0 149 68-235 29-197 (906)
164 PLN03088 SGT1, suppressor of 97.3 0.0086 1.9E-07 54.0 14.5 88 35-133 11-98 (356)
165 KOG2053 Mitochondrial inherita 97.3 0.18 4E-06 49.2 23.0 219 3-238 21-257 (932)
166 PF13281 DUF4071: Domain of un 97.3 0.062 1.3E-06 48.0 18.7 167 29-204 144-336 (374)
167 PF13432 TPR_16: Tetratricopep 97.3 0.00093 2E-08 43.8 5.7 54 181-234 5-58 (65)
168 KOG1127 TPR repeat-containing 97.3 0.034 7.3E-07 54.7 17.9 180 6-201 473-658 (1238)
169 PF06239 ECSIT: Evolutionarily 97.2 0.0039 8.6E-08 50.6 10.0 88 68-156 45-153 (228)
170 PF13432 TPR_16: Tetratricopep 97.2 0.0021 4.5E-08 42.0 7.2 60 147-206 3-64 (65)
171 PF03704 BTAD: Bacterial trans 97.2 0.0013 2.9E-08 51.0 7.2 69 175-243 64-137 (146)
172 PF12921 ATP13: Mitochondrial 97.2 0.0056 1.2E-07 46.0 10.1 28 69-96 1-28 (126)
173 KOG0553 TPR repeat-containing 97.2 0.0048 1E-07 52.4 10.5 97 37-148 92-189 (304)
174 KOG1914 mRNA cleavage and poly 97.2 0.043 9.3E-07 50.5 16.7 174 7-192 347-529 (656)
175 PF14559 TPR_19: Tetratricopep 97.2 0.00078 1.7E-08 44.5 4.5 51 185-235 3-53 (68)
176 PF14559 TPR_19: Tetratricopep 97.2 0.0026 5.6E-08 42.0 7.0 47 118-167 4-51 (68)
177 KOG0553 TPR repeat-containing 97.2 0.006 1.3E-07 51.8 10.5 88 117-207 93-183 (304)
178 KOG0548 Molecular co-chaperone 97.1 0.05 1.1E-06 49.9 16.9 209 5-237 238-456 (539)
179 PF12921 ATP13: Mitochondrial 97.1 0.0096 2.1E-07 44.7 10.7 97 25-150 1-97 (126)
180 PRK10866 outer membrane biogen 97.1 0.12 2.7E-06 43.7 18.4 186 25-234 31-239 (243)
181 KOG2053 Mitochondrial inherita 97.1 0.25 5.3E-06 48.4 21.8 192 2-206 54-259 (932)
182 KOG0985 Vesicle coat protein c 97.1 0.058 1.3E-06 53.3 17.7 177 26-232 1104-1304(1666)
183 PF12688 TPR_5: Tetratrico pep 97.1 0.024 5.3E-07 42.1 12.3 91 76-166 7-100 (120)
184 KOG1127 TPR repeat-containing 97.1 0.016 3.4E-07 56.9 13.7 160 71-234 493-657 (1238)
185 PF14938 SNAP: Soluble NSF att 97.0 0.038 8.3E-07 48.1 14.7 201 27-233 36-263 (282)
186 smart00299 CLH Clathrin heavy 96.9 0.12 2.5E-06 39.7 15.7 125 30-184 11-136 (140)
187 PF12688 TPR_5: Tetratrico pep 96.9 0.098 2.1E-06 38.9 14.3 108 31-152 6-117 (120)
188 PF13371 TPR_9: Tetratricopept 96.9 0.0044 9.5E-08 41.5 6.6 57 181-237 3-59 (73)
189 COG4235 Cytochrome c biogenesi 96.9 0.021 4.5E-07 48.7 11.8 102 138-239 152-259 (287)
190 KOG0624 dsRNA-activated protei 96.9 0.25 5.3E-06 43.2 22.6 194 25-236 37-252 (504)
191 PF13414 TPR_11: TPR repeat; P 96.9 0.0071 1.5E-07 40.0 7.4 61 71-132 4-65 (69)
192 PF04840 Vps16_C: Vps16, C-ter 96.8 0.17 3.7E-06 44.7 17.3 113 143-275 179-291 (319)
193 PF03704 BTAD: Bacterial trans 96.8 0.012 2.6E-07 45.6 9.1 72 72-144 64-139 (146)
194 COG4700 Uncharacterized protei 96.8 0.19 4.2E-06 40.0 17.3 131 68-198 87-218 (251)
195 PRK10803 tol-pal system protei 96.8 0.019 4.2E-07 49.1 10.8 96 142-237 144-247 (263)
196 PRK10866 outer membrane biogen 96.8 0.28 6.1E-06 41.6 20.9 178 75-271 37-237 (243)
197 KOG2796 Uncharacterized conser 96.7 0.14 3E-06 43.0 14.7 132 108-240 180-319 (366)
198 PF14938 SNAP: Soluble NSF att 96.7 0.064 1.4E-06 46.7 13.5 162 73-236 38-225 (282)
199 KOG1130 Predicted G-alpha GTPa 96.7 0.022 4.8E-07 50.6 10.3 236 1-237 27-345 (639)
200 PRK10803 tol-pal system protei 96.6 0.069 1.5E-06 45.8 12.8 102 106-207 144-251 (263)
201 PF13424 TPR_12: Tetratricopep 96.5 0.014 3E-07 39.7 6.7 67 26-98 5-74 (78)
202 PF13424 TPR_12: Tetratricopep 96.5 0.0079 1.7E-07 40.9 5.4 21 145-165 9-29 (78)
203 PF04840 Vps16_C: Vps16, C-ter 96.5 0.13 2.8E-06 45.5 14.1 110 72-199 179-288 (319)
204 PF13525 YfiO: Outer membrane 96.5 0.4 8.6E-06 39.5 17.6 174 30-227 9-198 (203)
205 KOG2796 Uncharacterized conser 96.4 0.49 1.1E-05 39.9 18.8 135 71-206 178-319 (366)
206 KOG0548 Molecular co-chaperone 96.4 0.028 6.1E-07 51.5 9.5 102 78-183 10-114 (539)
207 KOG3941 Intermediate in Toll s 96.3 0.048 1E-06 46.1 9.6 89 23-120 64-173 (406)
208 PF13371 TPR_9: Tetratricopept 96.3 0.04 8.7E-07 36.7 7.8 54 35-98 4-57 (73)
209 PRK15331 chaperone protein Sic 96.2 0.19 4E-06 39.3 12.1 85 151-235 47-133 (165)
210 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.16 3.5E-06 45.9 12.8 131 71-205 398-534 (660)
211 PF04184 ST7: ST7 protein; In 96.1 0.51 1.1E-05 43.4 16.0 77 107-183 261-341 (539)
212 PF13281 DUF4071: Domain of un 96.0 1.1 2.3E-05 40.4 18.3 162 75-237 146-335 (374)
213 PRK15331 chaperone protein Sic 96.0 0.12 2.7E-06 40.3 10.2 87 36-133 47-133 (165)
214 KOG2041 WD40 repeat protein [G 96.0 0.13 2.7E-06 49.0 12.0 53 140-198 851-903 (1189)
215 PF13170 DUF4003: Protein of u 96.0 0.44 9.6E-06 41.6 14.7 133 7-148 78-224 (297)
216 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.05 1.1E-06 49.5 9.0 98 140-240 74-178 (453)
217 PF13428 TPR_14: Tetratricopep 95.9 0.023 5.1E-07 33.7 4.6 40 175-214 3-42 (44)
218 smart00299 CLH Clathrin heavy 95.8 0.6 1.3E-05 35.7 15.0 128 72-219 9-137 (140)
219 PF13525 YfiO: Outer membrane 95.8 0.87 1.9E-05 37.4 16.1 162 3-193 17-198 (203)
220 COG5107 RNA14 Pre-mRNA 3'-end 95.8 0.27 5.8E-06 44.6 12.5 131 104-236 396-531 (660)
221 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.14 3E-06 46.6 10.9 62 103-167 73-138 (453)
222 PF09205 DUF1955: Domain of un 95.7 0.59 1.3E-05 35.0 12.1 140 81-239 13-152 (161)
223 KOG2041 WD40 repeat protein [G 95.7 0.23 5.1E-06 47.3 12.3 260 23-329 689-953 (1189)
224 COG4235 Cytochrome c biogenesi 95.7 0.55 1.2E-05 40.3 13.5 111 102-215 153-268 (287)
225 COG4700 Uncharacterized protei 95.7 0.85 1.9E-05 36.4 16.6 151 76-233 62-219 (251)
226 KOG1538 Uncharacterized conser 95.5 1.8 3.9E-05 41.2 17.1 202 13-239 622-849 (1081)
227 PF13431 TPR_17: Tetratricopep 95.4 0.016 3.5E-07 32.3 2.3 33 196-228 2-34 (34)
228 COG0457 NrfG FOG: TPR repeat [ 95.4 1.2 2.6E-05 36.1 25.1 219 7-236 39-265 (291)
229 KOG3941 Intermediate in Toll s 95.2 0.23 4.9E-06 42.2 9.5 99 68-167 65-185 (406)
230 PF00637 Clathrin: Region in C 95.2 0.00081 1.8E-08 52.0 -4.6 127 32-187 13-139 (143)
231 PF04053 Coatomer_WDAD: Coatom 95.1 0.33 7.2E-06 44.9 11.4 133 80-238 271-404 (443)
232 KOG1538 Uncharacterized conser 95.1 0.15 3.2E-06 48.1 8.9 266 22-331 552-849 (1081)
233 KOG0543 FKBP-type peptidyl-pro 95.0 0.71 1.5E-05 41.3 12.4 95 141-235 257-354 (397)
234 KOG0550 Molecular chaperone (D 94.9 0.92 2E-05 40.7 12.8 167 68-240 166-354 (486)
235 COG3118 Thioredoxin domain-con 94.7 2.5 5.3E-05 36.4 15.0 143 79-223 143-288 (304)
236 COG1729 Uncharacterized protei 94.4 0.46 1E-05 40.2 9.6 91 143-236 144-244 (262)
237 PF10300 DUF3808: Protein of u 94.4 2.8 6.2E-05 39.4 15.9 165 30-200 192-374 (468)
238 KOG2114 Vacuolar assembly/sort 94.3 4.4 9.6E-05 39.9 16.7 139 3-169 380-518 (933)
239 COG3629 DnrI DNA-binding trans 94.3 0.31 6.7E-06 41.8 8.3 67 175-241 155-226 (280)
240 KOG4555 TPR repeat-containing 94.2 1.3 2.8E-05 33.2 10.3 88 78-167 51-141 (175)
241 COG3898 Uncharacterized membra 94.1 4.2 9.1E-05 36.5 22.6 220 4-240 133-396 (531)
242 PF13512 TPR_18: Tetratricopep 94.1 1.2 2.6E-05 34.0 10.4 82 69-153 10-94 (142)
243 KOG0543 FKBP-type peptidyl-pro 94.0 0.74 1.6E-05 41.2 10.3 93 71-167 258-352 (397)
244 PF10300 DUF3808: Protein of u 94.0 5.5 0.00012 37.5 19.0 161 72-235 190-375 (468)
245 COG1729 Uncharacterized protei 93.9 1 2.3E-05 38.1 10.7 101 107-208 144-250 (262)
246 PF09205 DUF1955: Domain of un 93.9 2 4.4E-05 32.3 11.3 57 109-167 90-146 (161)
247 PF10602 RPN7: 26S proteasome 93.9 2.1 4.6E-05 34.3 12.1 97 71-167 37-139 (177)
248 COG3629 DnrI DNA-binding trans 93.8 1.1 2.3E-05 38.6 10.8 79 72-151 155-237 (280)
249 PF13176 TPR_7: Tetratricopept 93.3 0.23 5E-06 27.9 4.2 26 72-97 1-26 (36)
250 KOG1585 Protein required for f 93.3 4.3 9.4E-05 34.0 14.6 218 7-231 9-251 (308)
251 PF04053 Coatomer_WDAD: Coatom 93.3 4 8.7E-05 38.0 14.4 155 37-231 272-426 (443)
252 PF08631 SPO22: Meiosis protei 93.3 5.1 0.00011 34.7 22.7 226 3-233 5-272 (278)
253 COG3118 Thioredoxin domain-con 92.6 6.3 0.00014 34.0 15.5 150 25-190 134-289 (304)
254 PF13512 TPR_18: Tetratricopep 92.3 4.1 8.9E-05 31.1 11.6 52 153-204 22-78 (142)
255 PRK11906 transcriptional regul 92.2 9.4 0.0002 35.3 16.8 145 7-167 274-433 (458)
256 KOG1941 Acetylcholine receptor 92.1 8.4 0.00018 34.3 14.7 224 3-232 18-271 (518)
257 KOG2610 Uncharacterized conser 91.9 7.4 0.00016 34.3 13.0 117 5-131 117-235 (491)
258 KOG1130 Predicted G-alpha GTPa 91.8 0.54 1.2E-05 42.2 6.3 193 35-233 26-261 (639)
259 PF13428 TPR_14: Tetratricopep 91.7 0.9 1.9E-05 26.7 5.5 28 72-99 3-30 (44)
260 PF07035 Mic1: Colon cancer-as 91.7 5.6 0.00012 31.4 15.7 89 68-167 27-115 (167)
261 PRK11906 transcriptional regul 91.6 11 0.00024 34.8 16.2 162 27-201 252-435 (458)
262 KOG2280 Vacuolar assembly/sort 91.6 15 0.00032 36.0 18.1 128 125-271 668-795 (829)
263 PF00515 TPR_1: Tetratricopept 91.3 0.63 1.4E-05 25.4 4.3 31 174-204 2-32 (34)
264 PF00515 TPR_1: Tetratricopept 91.3 0.62 1.3E-05 25.4 4.3 28 71-98 2-29 (34)
265 KOG2610 Uncharacterized conser 91.1 3.3 7.1E-05 36.4 10.1 157 82-241 115-281 (491)
266 KOG4555 TPR repeat-containing 90.9 5.5 0.00012 30.0 10.6 51 3-54 55-105 (175)
267 PF07035 Mic1: Colon cancer-as 90.8 6.9 0.00015 30.9 15.3 137 90-239 14-152 (167)
268 KOG2114 Vacuolar assembly/sort 90.6 12 0.00025 37.2 14.2 80 80-167 378-457 (933)
269 PF09613 HrpB1_HrpK: Bacterial 90.6 6.9 0.00015 30.6 11.8 65 116-185 21-89 (160)
270 PF07719 TPR_2: Tetratricopept 90.5 1.2 2.5E-05 24.1 5.0 31 175-205 3-33 (34)
271 PF02284 COX5A: Cytochrome c o 90.5 2.7 5.9E-05 29.9 7.6 61 88-150 28-88 (108)
272 PF13176 TPR_7: Tetratricopept 90.4 0.81 1.8E-05 25.6 4.2 23 176-198 2-24 (36)
273 KOG1920 IkappaB kinase complex 90.3 13 0.00029 38.3 14.8 169 22-199 787-991 (1265)
274 COG4785 NlpI Lipoprotein NlpI, 90.3 9.3 0.0002 31.6 15.8 160 71-238 100-268 (297)
275 COG3947 Response regulator con 90.2 11 0.00025 32.5 15.6 171 69-241 121-352 (361)
276 cd00923 Cyt_c_Oxidase_Va Cytoc 90.1 2.4 5.2E-05 29.8 6.9 63 85-149 22-84 (103)
277 PF13374 TPR_10: Tetratricopep 89.9 0.98 2.1E-05 25.8 4.5 28 71-98 3-30 (42)
278 PF10602 RPN7: 26S proteasome 89.4 8.5 0.00018 30.8 10.9 102 26-134 36-142 (177)
279 PF00637 Clathrin: Region in C 89.4 0.19 4.1E-06 38.6 1.3 85 76-168 13-97 (143)
280 PF13170 DUF4003: Protein of u 89.3 14 0.00031 32.3 17.9 124 86-211 78-221 (297)
281 PF07079 DUF1347: Protein of u 89.2 18 0.00039 33.4 20.1 217 3-235 18-326 (549)
282 KOG2280 Vacuolar assembly/sort 89.2 3.5 7.5E-05 40.0 9.5 106 76-198 690-795 (829)
283 COG4105 ComL DNA uptake lipopr 89.0 13 0.00028 31.5 21.3 70 3-81 46-117 (254)
284 KOG0550 Molecular chaperone (D 88.9 18 0.00039 32.9 14.4 161 24-202 166-350 (486)
285 COG0457 NrfG FOG: TPR repeat [ 88.7 11 0.00024 30.2 24.1 190 39-238 36-233 (291)
286 PF04184 ST7: ST7 protein; In 88.6 21 0.00046 33.4 14.5 54 179-232 265-320 (539)
287 PF11207 DUF2989: Protein of u 88.6 6.4 0.00014 32.0 9.5 76 8-90 123-198 (203)
288 PF02284 COX5A: Cytochrome c o 88.2 4.8 0.0001 28.7 7.4 48 168-215 40-87 (108)
289 KOG4570 Uncharacterized conser 88.2 5.7 0.00012 34.6 9.3 96 69-167 63-161 (418)
290 PF07719 TPR_2: Tetratricopept 88.1 1.5 3.3E-05 23.6 4.3 27 72-98 3-29 (34)
291 COG4105 ComL DNA uptake lipopr 88.1 15 0.00033 31.1 20.3 166 68-235 33-232 (254)
292 KOG4570 Uncharacterized conser 88.0 3 6.6E-05 36.2 7.6 103 21-134 59-164 (418)
293 PF13762 MNE1: Mitochondrial s 88.0 7.9 0.00017 29.7 9.2 97 18-118 29-128 (145)
294 PF13431 TPR_17: Tetratricopep 88.0 1 2.3E-05 24.8 3.4 23 68-90 11-33 (34)
295 TIGR02561 HrpB1_HrpK type III 87.9 8.1 0.00018 29.8 9.1 47 117-168 22-71 (153)
296 COG3898 Uncharacterized membra 87.6 22 0.00047 32.2 22.0 37 168-204 257-294 (531)
297 COG4649 Uncharacterized protei 87.2 13 0.00029 29.5 14.7 132 26-167 59-193 (221)
298 COG1747 Uncharacterized N-term 87.2 26 0.00057 32.9 20.7 177 23-217 63-249 (711)
299 PF02259 FAT: FAT domain; Int 86.7 23 0.00049 31.6 15.0 185 33-239 5-216 (352)
300 PF09613 HrpB1_HrpK: Bacterial 86.7 6.9 0.00015 30.6 8.3 74 142-218 8-88 (160)
301 PF07079 DUF1347: Protein of u 86.6 26 0.00057 32.3 17.9 31 26-56 298-328 (549)
302 PF04097 Nic96: Nup93/Nic96; 86.1 18 0.0004 35.4 12.9 217 4-241 271-536 (613)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 86.1 6.4 0.00014 27.8 7.0 48 168-215 37-84 (103)
304 PF13929 mRNA_stabil: mRNA sta 85.9 22 0.00048 30.7 14.3 123 73-198 134-263 (292)
305 KOG1920 IkappaB kinase complex 85.3 48 0.001 34.5 15.2 51 148-198 972-1024(1265)
306 COG4455 ImpE Protein of avirul 84.7 6.4 0.00014 32.5 7.5 56 74-130 5-60 (273)
307 PF13374 TPR_10: Tetratricopep 84.5 2.7 5.9E-05 23.8 4.3 29 26-54 2-30 (42)
308 PRK15180 Vi polysaccharide bio 83.9 13 0.00028 34.4 9.9 127 117-245 301-429 (831)
309 PF13181 TPR_8: Tetratricopept 83.8 3.2 7E-05 22.4 4.1 29 175-203 3-31 (34)
310 KOG4234 TPR repeat-containing 83.5 6.3 0.00014 32.1 6.9 87 151-237 105-198 (271)
311 PF11207 DUF2989: Protein of u 82.8 23 0.0005 28.9 10.0 68 123-192 124-197 (203)
312 PF13929 mRNA_stabil: mRNA sta 82.5 32 0.00069 29.8 12.3 126 29-166 134-263 (292)
313 PF07163 Pex26: Pex26 protein; 81.3 21 0.00046 30.7 9.6 86 77-165 90-182 (309)
314 PF07721 TPR_4: Tetratricopept 81.2 3.5 7.6E-05 21.0 3.3 20 146-165 6-25 (26)
315 TIGR02561 HrpB1_HrpK type III 80.5 10 0.00022 29.3 6.8 60 143-204 9-75 (153)
316 KOG1550 Extracellular protein 80.1 59 0.0013 31.4 14.7 118 3-134 261-393 (552)
317 PF13181 TPR_8: Tetratricopept 80.1 6.2 0.00013 21.2 4.4 27 72-98 3-29 (34)
318 TIGR02508 type_III_yscG type I 79.3 20 0.00044 25.6 8.3 60 148-210 46-105 (115)
319 PF13174 TPR_6: Tetratricopept 79.3 4.7 0.0001 21.4 3.7 24 181-204 8-31 (33)
320 KOG4648 Uncharacterized conser 78.8 5.3 0.00012 35.2 5.5 91 113-206 105-198 (536)
321 COG4649 Uncharacterized protei 78.5 32 0.0007 27.4 14.2 129 71-201 60-195 (221)
322 PF11663 Toxin_YhaV: Toxin wit 78.0 2.7 5.9E-05 31.6 3.0 31 83-115 108-138 (140)
323 PF13762 MNE1: Mitochondrial s 77.9 29 0.00064 26.7 10.8 83 71-154 40-128 (145)
324 PRK15180 Vi polysaccharide bio 76.5 16 0.00036 33.8 8.1 127 77-207 296-425 (831)
325 KOG1585 Protein required for f 76.1 48 0.001 28.1 13.3 58 176-233 153-216 (308)
326 KOG4648 Uncharacterized conser 75.8 19 0.00042 31.9 8.0 52 1-54 107-159 (536)
327 KOG0276 Vesicle coat complex C 75.3 56 0.0012 31.5 11.2 84 69-168 665-748 (794)
328 PF10366 Vps39_1: Vacuolar sor 74.9 27 0.00058 25.4 7.5 27 72-98 41-67 (108)
329 PF06552 TOM20_plant: Plant sp 74.8 42 0.00091 26.9 9.6 44 189-239 96-139 (186)
330 KOG0276 Vesicle coat complex C 74.7 85 0.0018 30.4 14.7 130 72-231 616-745 (794)
331 TIGR03504 FimV_Cterm FimV C-te 74.7 5.9 0.00013 23.4 3.3 26 212-237 4-29 (44)
332 KOG2908 26S proteasome regulat 74.6 48 0.001 29.4 10.0 89 31-125 80-177 (380)
333 COG3947 Response regulator con 74.1 25 0.00055 30.5 8.1 72 72-144 281-356 (361)
334 PHA02875 ankyrin repeat protei 74.0 37 0.00081 31.2 10.3 133 13-166 17-157 (413)
335 TIGR03504 FimV_Cterm FimV C-te 73.8 8.7 0.00019 22.7 3.9 25 76-100 5-29 (44)
336 PF11846 DUF3366: Domain of un 73.7 16 0.00035 29.6 7.0 36 169-204 140-175 (193)
337 COG4455 ImpE Protein of avirul 72.9 17 0.00037 30.1 6.6 89 143-241 3-96 (273)
338 KOG2066 Vacuolar assembly/sort 72.8 88 0.0019 31.1 12.2 102 77-185 363-467 (846)
339 KOG1550 Extracellular protein 72.6 96 0.0021 30.0 17.1 182 42-239 228-429 (552)
340 KOG1498 26S proteasome regulat 72.1 78 0.0017 28.8 14.9 88 148-239 138-244 (439)
341 smart00028 TPR Tetratricopepti 72.0 8.3 0.00018 19.4 3.5 17 182-198 10-26 (34)
342 KOG4077 Cytochrome c oxidase, 71.6 30 0.00065 25.9 7.0 59 88-148 67-125 (149)
343 PF10579 Rapsyn_N: Rapsyn N-te 71.3 14 0.00031 25.0 4.9 20 143-162 45-64 (80)
344 PHA03100 ankyrin repeat protei 71.1 93 0.002 29.2 13.2 135 13-166 50-198 (480)
345 KOG2659 LisH motif-containing 70.7 60 0.0013 27.1 9.3 97 68-167 24-129 (228)
346 KOG4234 TPR repeat-containing 70.1 53 0.0011 27.0 8.6 83 2-99 106-197 (271)
347 PF11838 ERAP1_C: ERAP1-like C 69.8 78 0.0017 27.8 17.8 110 121-231 146-261 (324)
348 KOG1258 mRNA processing protei 67.7 1.2E+02 0.0026 29.2 18.6 183 25-222 296-490 (577)
349 smart00386 HAT HAT (Half-A-TPR 67.3 14 0.0003 19.2 3.7 29 187-215 1-29 (33)
350 PF13934 ELYS: Nuclear pore co 66.5 77 0.0017 26.5 12.3 52 147-199 114-166 (226)
351 PRK10564 maltose regulon perip 65.9 14 0.0003 32.2 5.0 45 68-112 254-299 (303)
352 PF08631 SPO22: Meiosis protei 65.8 89 0.0019 27.0 20.6 160 37-200 4-184 (278)
353 KOG2396 HAT (Half-A-TPR) repea 64.9 1.1E+02 0.0024 28.8 10.7 89 88-178 89-179 (568)
354 PF11846 DUF3366: Domain of un 64.6 36 0.00078 27.5 7.2 51 117-167 120-170 (193)
355 COG5159 RPN6 26S proteasome re 64.1 99 0.0021 26.9 13.0 132 33-167 10-151 (421)
356 TIGR02508 type_III_yscG type I 63.8 52 0.0011 23.6 8.6 45 82-132 51-95 (115)
357 COG5159 RPN6 26S proteasome re 63.7 1E+02 0.0022 26.9 10.4 49 76-124 9-64 (421)
358 KOG1586 Protein required for f 63.3 92 0.002 26.3 12.1 18 184-201 165-182 (288)
359 PF08311 Mad3_BUB1_I: Mad3/BUB 62.2 64 0.0014 24.1 9.1 61 25-95 64-124 (126)
360 PF09477 Type_III_YscG: Bacter 61.8 59 0.0013 23.6 8.7 77 41-133 21-97 (116)
361 COG2178 Predicted RNA-binding 61.5 87 0.0019 25.5 9.3 18 218-235 132-149 (204)
362 PF10366 Vps39_1: Vacuolar sor 61.3 56 0.0012 23.7 6.9 25 144-168 42-66 (108)
363 PF11848 DUF3368: Domain of un 61.3 20 0.00044 21.5 3.9 33 3-35 14-46 (48)
364 PF06552 TOM20_plant: Plant sp 61.1 86 0.0019 25.2 8.6 47 71-117 29-81 (186)
365 KOG4077 Cytochrome c oxidase, 60.9 59 0.0013 24.4 6.7 47 168-214 79-125 (149)
366 PF14853 Fis1_TPR_C: Fis1 C-te 60.5 21 0.00045 22.1 3.9 30 179-208 7-36 (53)
367 KOG0545 Aryl-hydrocarbon recep 59.9 78 0.0017 26.9 8.1 88 149-236 186-293 (329)
368 PRK13342 recombination factor 59.9 1.5E+02 0.0032 27.5 15.3 37 118-155 243-279 (413)
369 COG2976 Uncharacterized protei 59.6 96 0.0021 25.3 11.6 126 70-202 54-188 (207)
370 KOG4567 GTPase-activating prot 59.5 1.3E+02 0.0027 26.6 10.4 43 91-133 264-306 (370)
371 PF14689 SPOB_a: Sensor_kinase 58.0 47 0.001 21.2 5.4 27 72-98 25-51 (62)
372 cd00280 TRFH Telomeric Repeat 57.4 71 0.0015 25.8 7.1 67 121-187 85-157 (200)
373 PF10579 Rapsyn_N: Rapsyn N-te 57.3 36 0.00077 23.1 4.7 47 82-128 18-66 (80)
374 KOG1464 COP9 signalosome, subu 57.3 1.3E+02 0.0028 26.0 10.4 90 147-236 71-174 (440)
375 PRK10564 maltose regulon perip 56.8 23 0.00049 30.9 4.7 38 21-58 251-289 (303)
376 KOG2297 Predicted translation 56.0 1.4E+02 0.0031 26.2 10.4 115 101-227 219-341 (412)
377 PF11848 DUF3368: Domain of un 55.8 43 0.00093 20.1 5.1 32 82-113 14-45 (48)
378 KOG4507 Uncharacterized conser 55.0 48 0.001 31.8 6.8 100 116-218 618-721 (886)
379 PF09670 Cas_Cas02710: CRISPR- 54.4 1.7E+02 0.0038 26.7 12.7 56 78-134 139-198 (379)
380 PF14853 Fis1_TPR_C: Fis1 C-te 54.3 48 0.001 20.5 4.7 34 76-111 7-40 (53)
381 PRK10941 hypothetical protein; 54.1 1E+02 0.0022 26.7 8.3 63 175-237 183-245 (269)
382 COG5108 RPO41 Mitochondrial DN 53.3 1.2E+02 0.0025 29.9 9.0 77 31-117 33-115 (1117)
383 PF14689 SPOB_a: Sensor_kinase 52.9 32 0.00069 22.0 4.0 30 104-133 22-51 (62)
384 PF08311 Mad3_BUB1_I: Mad3/BUB 52.6 96 0.0021 23.2 8.1 42 191-232 81-124 (126)
385 COG2976 Uncharacterized protei 51.0 1.4E+02 0.003 24.5 13.8 125 106-237 55-189 (207)
386 PF11663 Toxin_YhaV: Toxin wit 51.0 15 0.00031 27.8 2.4 32 116-150 106-137 (140)
387 KOG1941 Acetylcholine receptor 50.7 1.9E+02 0.0042 26.2 13.0 126 74-199 126-272 (518)
388 PF07163 Pex26: Pex26 protein; 50.6 1.4E+02 0.0031 25.9 8.4 112 82-196 47-181 (309)
389 COG1747 Uncharacterized N-term 50.4 2.3E+02 0.0051 27.0 19.4 162 3-181 78-247 (711)
390 KOG0292 Vesicle coat complex C 49.0 39 0.00085 34.0 5.5 95 83-201 606-700 (1202)
391 PF04910 Tcf25: Transcriptiona 48.8 2.1E+02 0.0045 26.0 12.6 95 141-235 40-167 (360)
392 KOG3807 Predicted membrane pro 48.3 2E+02 0.0044 25.7 11.3 57 111-167 281-337 (556)
393 KOG4642 Chaperone-dependent E3 48.2 1.7E+02 0.0037 24.8 9.6 112 82-198 22-142 (284)
394 PF09477 Type_III_YscG: Bacter 48.1 1.1E+02 0.0023 22.3 7.6 77 120-201 21-97 (116)
395 PF09454 Vps23_core: Vps23 cor 47.8 56 0.0012 21.2 4.5 52 22-83 4-55 (65)
396 PF03745 DUF309: Domain of unk 47.2 65 0.0014 20.6 4.7 47 3-49 11-62 (62)
397 KOG4279 Serine/threonine prote 46.6 3.2E+02 0.0069 27.5 10.8 166 2-206 212-399 (1226)
398 KOG0890 Protein kinase of the 46.4 5.2E+02 0.011 29.9 14.2 112 75-195 1388-1505(2382)
399 COG5108 RPO41 Mitochondrial DN 46.3 1.3E+02 0.0028 29.5 8.2 48 75-122 33-82 (1117)
400 PF11817 Foie-gras_1: Foie gra 46.1 85 0.0018 26.6 6.7 55 145-199 182-244 (247)
401 cd08819 CARD_MDA5_2 Caspase ac 46.1 99 0.0021 21.5 7.6 67 10-91 21-87 (88)
402 KOG2582 COP9 signalosome, subu 45.6 1.1E+02 0.0023 27.6 7.1 17 221-237 330-346 (422)
403 PRK14963 DNA polymerase III su 45.5 2.7E+02 0.0058 26.7 10.5 93 9-104 179-275 (504)
404 PF13934 ELYS: Nuclear pore co 45.3 1.8E+02 0.004 24.3 13.0 107 72-187 78-186 (226)
405 PRK11619 lytic murein transgly 45.2 3.2E+02 0.007 27.1 20.9 116 119-234 255-373 (644)
406 PF02607 B12-binding_2: B12 bi 45.0 37 0.00079 22.7 3.6 38 82-119 13-50 (79)
407 PF12796 Ank_2: Ankyrin repeat 44.8 47 0.001 22.4 4.2 8 98-105 47-54 (89)
408 PRK14958 DNA polymerase III su 44.7 2.9E+02 0.0063 26.5 11.4 85 17-105 191-280 (509)
409 COG0735 Fur Fe2+/Zn2+ uptake r 44.2 1.3E+02 0.0028 23.1 6.8 41 93-134 9-49 (145)
410 cd00280 TRFH Telomeric Repeat 44.1 1.7E+02 0.0037 23.7 7.7 66 86-155 85-157 (200)
411 PF11817 Foie-gras_1: Foie gra 43.9 1.3E+02 0.0027 25.6 7.4 77 158-234 162-245 (247)
412 PHA02875 ankyrin repeat protei 43.3 2E+02 0.0044 26.3 9.3 143 37-197 10-156 (413)
413 PF10475 DUF2450: Protein of u 42.6 2.3E+02 0.005 24.7 9.7 107 75-193 103-217 (291)
414 KOG1258 mRNA processing protei 41.7 3.3E+02 0.0073 26.3 12.3 131 68-202 43-180 (577)
415 KOG0403 Neoplastic transformat 41.6 1.6E+02 0.0035 27.4 7.8 52 146-197 514-567 (645)
416 PF02847 MA3: MA3 domain; Int 41.0 69 0.0015 23.1 4.8 24 74-97 6-29 (113)
417 PRK11619 lytic murein transgly 39.9 3.9E+02 0.0084 26.6 15.4 135 82-223 45-179 (644)
418 PRK12798 chemotaxis protein; R 39.8 3.1E+02 0.0067 25.4 20.0 155 38-203 124-287 (421)
419 PRK09857 putative transposase; 39.2 2.5E+02 0.0054 24.6 8.6 66 176-241 209-274 (292)
420 PRK08691 DNA polymerase III su 38.5 3.1E+02 0.0066 27.5 9.7 85 18-105 192-280 (709)
421 PF15469 Sec5: Exocyst complex 37.8 2.1E+02 0.0045 22.8 7.5 115 108-247 60-179 (182)
422 cd08819 CARD_MDA5_2 Caspase ac 37.5 1.4E+02 0.003 20.7 7.4 66 89-161 21-86 (88)
423 PF09454 Vps23_core: Vps23 cor 37.1 97 0.0021 20.1 4.3 48 68-116 6-53 (65)
424 COG0735 Fur Fe2+/Zn2+ uptake r 36.5 2E+02 0.0042 22.1 7.0 63 47-119 7-69 (145)
425 COG2178 Predicted RNA-binding 35.9 2.4E+02 0.0053 23.0 10.0 19 35-53 38-56 (204)
426 PF12862 Apc5: Anaphase-promot 35.6 1.5E+02 0.0033 20.6 7.6 56 37-98 9-69 (94)
427 PF10475 DUF2450: Protein of u 35.5 3E+02 0.0065 24.0 9.9 142 73-227 63-217 (291)
428 PRK14956 DNA polymerase III su 35.2 3.7E+02 0.0081 25.6 9.4 33 209-241 250-282 (484)
429 PF02259 FAT: FAT domain; Int 35.1 3.2E+02 0.0069 24.1 16.4 64 138-201 143-212 (352)
430 cd07229 Pat_TGL3_like Triacylg 34.7 3.7E+02 0.008 24.8 9.9 132 47-190 100-254 (391)
431 PF12862 Apc5: Anaphase-promot 34.7 1.6E+02 0.0034 20.5 7.8 54 81-134 9-70 (94)
432 PF07575 Nucleopor_Nup85: Nup8 34.4 1.4E+02 0.0031 29.0 7.0 32 219-250 507-538 (566)
433 PF11838 ERAP1_C: ERAP1-like C 34.4 3.2E+02 0.0069 23.9 13.8 120 37-167 141-263 (324)
434 smart00777 Mad3_BUB1_I Mad3/BU 34.3 2E+02 0.0043 21.5 7.1 44 43-94 80-123 (125)
435 PF03745 DUF309: Domain of unk 34.3 1.3E+02 0.0027 19.3 5.1 47 81-127 10-61 (62)
436 PF11768 DUF3312: Protein of u 34.2 3.7E+02 0.008 25.9 9.1 60 143-202 410-473 (545)
437 PF14561 TPR_20: Tetratricopep 34.2 1.4E+02 0.0031 20.7 5.2 50 174-223 23-74 (90)
438 PF11768 DUF3312: Protein of u 33.7 4.4E+02 0.0096 25.4 10.7 59 72-132 410-471 (545)
439 cd04449 DEP_DEPDC5-like DEP (D 33.6 20 0.00043 24.6 0.8 33 313-346 47-79 (83)
440 PRK14956 DNA polymerase III su 33.5 4.3E+02 0.0093 25.1 11.2 35 18-54 194-228 (484)
441 KOG0890 Protein kinase of the 32.6 3.1E+02 0.0067 31.5 9.3 113 110-228 1388-1504(2382)
442 PF10255 Paf67: RNA polymerase 32.6 2.9E+02 0.0063 25.5 8.1 100 68-167 73-190 (404)
443 KOG1586 Protein required for f 32.1 3.2E+02 0.0069 23.3 13.6 133 72-205 76-227 (288)
444 cd04440 DEP_2_P-Rex DEP (Dishe 32.1 37 0.0008 23.9 1.9 36 310-346 51-86 (93)
445 KOG4507 Uncharacterized conser 32.0 3.7E+02 0.0081 26.2 8.7 100 38-150 619-719 (886)
446 cd07153 Fur_like Ferric uptake 31.8 1.2E+02 0.0026 21.9 4.9 42 78-119 8-49 (116)
447 KOG4642 Chaperone-dependent E3 31.6 1.4E+02 0.0031 25.3 5.4 117 114-233 19-143 (284)
448 KOG0686 COP9 signalosome, subu 30.8 4.4E+02 0.0095 24.4 13.6 156 71-234 151-331 (466)
449 COG2909 MalT ATP-dependent tra 30.1 6.3E+02 0.014 26.0 21.6 221 4-232 428-684 (894)
450 PRK07452 DNA polymerase III su 30.0 3.9E+02 0.0084 23.6 8.9 32 106-140 202-233 (326)
451 PRK11639 zinc uptake transcrip 29.3 2.9E+02 0.0062 21.8 7.2 58 97-156 18-75 (169)
452 KOG0686 COP9 signalosome, subu 28.7 4.8E+02 0.01 24.2 12.7 162 1-167 160-330 (466)
453 KOG0292 Vesicle coat complex C 28.6 6.8E+02 0.015 25.9 12.1 112 68-201 670-781 (1202)
454 KOG1308 Hsp70-interacting prot 28.1 41 0.0009 29.9 1.9 87 154-240 127-215 (377)
455 PF04090 RNA_pol_I_TF: RNA pol 27.7 3.4E+02 0.0075 22.2 9.3 118 71-205 42-173 (199)
456 PF09670 Cas_Cas02710: CRISPR- 27.7 4.8E+02 0.01 23.9 11.6 57 35-99 140-198 (379)
457 KOG2063 Vacuolar assembly/sort 27.6 7.1E+02 0.015 25.8 11.8 157 73-230 507-707 (877)
458 PF10155 DUF2363: Uncharacteri 27.2 2.7E+02 0.0059 20.9 9.0 48 5-58 3-50 (126)
459 PRK06645 DNA polymerase III su 27.2 5.7E+02 0.012 24.6 10.6 94 9-105 191-292 (507)
460 PF04034 DUF367: Domain of unk 26.7 2.8E+02 0.006 20.8 7.9 55 141-195 66-121 (127)
461 KOG4814 Uncharacterized conser 26.6 2.4E+02 0.0052 27.7 6.6 83 153-235 366-456 (872)
462 PF02607 B12-binding_2: B12 bi 26.6 93 0.002 20.6 3.2 38 4-41 14-51 (79)
463 PF10255 Paf67: RNA polymerase 26.4 4.9E+02 0.011 24.1 8.5 55 179-233 128-190 (404)
464 PF07064 RIC1: RIC1; InterPro 26.1 4.2E+02 0.0091 22.7 14.9 154 72-236 84-249 (258)
465 PRK10941 hypothetical protein; 25.8 4.4E+02 0.0095 22.8 10.6 76 108-186 184-264 (269)
466 PRK09687 putative lyase; Provi 25.5 4.5E+02 0.0097 22.8 22.5 217 23-272 34-260 (280)
467 COG4976 Predicted methyltransf 25.4 1.6E+02 0.0034 24.9 4.6 48 117-167 7-55 (287)
468 cd04448 DEP_PIKfyve DEP (Dishe 25.3 55 0.0012 22.3 1.8 34 312-346 44-77 (81)
469 PRK09462 fur ferric uptake reg 25.3 3.1E+02 0.0068 20.9 7.1 58 96-155 8-66 (148)
470 KOG0991 Replication factor C, 25.2 4.3E+02 0.0094 22.5 10.3 133 75-217 135-282 (333)
471 PF10345 Cohesin_load: Cohesin 25.2 6.6E+02 0.014 24.7 19.0 187 8-201 38-253 (608)
472 PF11123 DNA_Packaging_2: DNA 24.8 2E+02 0.0043 19.2 4.1 31 156-186 12-44 (82)
473 cd04438 DEP_dishevelled DEP (D 24.7 38 0.00083 23.3 0.9 36 308-344 42-77 (84)
474 TIGR03581 EF_0839 conserved hy 24.7 4.1E+02 0.009 22.1 7.1 79 156-234 136-235 (236)
475 KOG3364 Membrane protein invol 24.5 3.3E+02 0.0071 20.9 8.9 73 23-105 29-104 (149)
476 COG4976 Predicted methyltransf 24.5 1.7E+02 0.0038 24.7 4.7 58 151-208 5-64 (287)
477 PF07443 HARP: HepA-related pr 24.4 26 0.00057 21.8 0.1 32 5-36 6-37 (55)
478 PF01475 FUR: Ferric uptake re 24.3 1.3E+02 0.0029 21.9 3.9 45 75-119 12-56 (120)
479 PF04097 Nic96: Nup93/Nic96; 24.3 7E+02 0.015 24.6 10.5 32 141-172 500-536 (613)
480 cd08780 Death_TRADD Death Doma 24.0 2.6E+02 0.0056 19.5 4.9 48 113-163 40-87 (90)
481 PF09986 DUF2225: Uncharacteri 23.9 4.2E+02 0.0091 21.9 12.0 22 78-99 173-194 (214)
482 PRK11639 zinc uptake transcrip 23.8 3.7E+02 0.008 21.2 7.1 47 75-121 30-76 (169)
483 COG2137 OraA Uncharacterized p 23.8 3.8E+02 0.0083 21.4 11.5 64 90-155 88-151 (174)
484 KOG2168 Cullins [Cell cycle co 23.7 8E+02 0.017 25.1 10.6 214 4-234 481-734 (835)
485 PRK10304 ferritin; Provisional 23.7 2.2E+02 0.0047 22.5 5.2 22 40-61 49-70 (165)
486 cd04441 DEP_2_DEP6 DEP (Dishev 23.5 62 0.0014 22.3 1.8 34 312-346 48-81 (85)
487 PF06957 COPI_C: Coatomer (COP 23.3 5.2E+02 0.011 24.1 8.1 44 163-206 288-333 (422)
488 PRK14700 recombination factor 23.3 5.2E+02 0.011 22.8 13.9 31 22-54 63-93 (300)
489 KOG4567 GTPase-activating prot 23.3 5.3E+02 0.012 22.9 8.2 45 11-55 263-307 (370)
490 COG4003 Uncharacterized protei 23.2 1.4E+02 0.0031 20.4 3.3 31 208-238 31-62 (98)
491 PRK14951 DNA polymerase III su 22.7 7.6E+02 0.016 24.5 10.4 84 18-104 197-284 (618)
492 PF10963 DUF2765: Protein of u 22.6 2.1E+02 0.0046 19.6 4.2 31 137-167 12-42 (83)
493 smart00804 TAP_C C-terminal do 22.4 1.1E+02 0.0024 19.7 2.7 20 5-24 39-58 (63)
494 cd07153 Fur_like Ferric uptake 22.3 1.9E+02 0.0041 20.9 4.4 38 118-156 13-50 (116)
495 cd04442 DEP_1_DEP6 DEP (Dishev 22.1 67 0.0015 22.0 1.7 34 312-345 44-77 (82)
496 PF14840 DNA_pol3_delt_C: Proc 22.1 90 0.0019 23.3 2.6 27 4-30 10-36 (125)
497 PRK14135 recX recombination re 21.9 5E+02 0.011 22.1 20.4 79 88-168 124-203 (263)
498 PF14863 Alkyl_sulf_dimr: Alky 21.7 3.8E+02 0.0081 20.6 7.1 63 156-221 56-118 (141)
499 COG2909 MalT ATP-dependent tra 21.6 9E+02 0.02 24.9 19.8 199 37-241 426-652 (894)
500 PF02631 RecX: RecX family; I 21.4 3.3E+02 0.0072 19.9 11.0 99 43-156 9-107 (121)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-75 Score=566.42 Aligned_cols=352 Identities=36% Similarity=0.627 Sum_probs=342.2
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC-------------
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL------------- 67 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l------------- 67 (352)
|++.|++++|+++|++|...|+.||..||++++.+|++.|++++|.+++.+|.+.|+.+|..+++++
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ---------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 048142 68 ---------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIR 138 (352)
Q Consensus 68 ---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~ 138 (352)
||+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+++|+.
T Consensus 380 ~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 380 RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999877999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 048142 139 PSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 139 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 218 (352)
|+..+|++|+++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.+..|.+..+|+.|++.|+
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhh------------------------hcCcccCchhhhhcCCH
Q 048142 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV------------------------KAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 219 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~------------------------~~G~~~~~~~~~~~~~~ 274 (352)
+.|++++|.++++.|+++|+++.++++|+.+.+.+|.|. +.|+.|+...++.++++
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~ 619 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE 619 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH
Confidence 999999999999999999999999999999887666554 78999999999999999
Q ss_pred HHHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEcccccccCccchhHHHhhhhcceEEeecCCccccccCCccCCCCCC
Q 048142 275 EEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKDFW 352 (352)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 352 (352)
+.++..+..|||+||++||+++++++.+|+|+||||+|+|||+|+|+||++.+|+|||||.+|||||++|+|||+|||
T Consensus 620 ~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 620 DEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-69 Score=534.97 Aligned_cols=348 Identities=41% Similarity=0.748 Sum_probs=333.7
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC-------------
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL------------- 67 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l------------- 67 (352)
|+++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.+.+++..+.+.|+.++..+.+++
T Consensus 465 ~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 4678899999999999985 69999999999999999999999999999999999999999888887
Q ss_pred --------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC
Q 048142 68 --------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP 139 (352)
Q Consensus 68 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p 139 (352)
||+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+++|+.|
T Consensus 544 ~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999996679999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS 219 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 219 (352)
+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++.+..|.+...|..|.+.|+.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhh------------------------hcCcccCchhhhhcCCHH
Q 048142 220 SRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV------------------------KAGFVPNKSEVLFDMDEE 275 (352)
Q Consensus 220 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~------------------------~~G~~~~~~~~~~~~~~~ 275 (352)
.|+|++|.++.+.|+++|++++++++|+.+++.+|.|. +.|+.|+...++ ..+++
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~ 782 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEV 782 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHH
Confidence 99999999999999999999999999999999887774 789999888777 44778
Q ss_pred HHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEcccccccCccchhHHHhhhhcceEEeecCCccccccCCccCCCC
Q 048142 276 EKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSCSCKD 350 (352)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 350 (352)
.++..+..|||+||++||+++++++++|+|+||||+|+|||+|+|+||++.+|+|||||.+|||||++|+|||+|
T Consensus 783 ~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 783 SKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.6e-47 Score=371.77 Aligned_cols=318 Identities=19% Similarity=0.227 Sum_probs=239.9
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
|++.|++++|.++|++|.+.|+.||..+|++||++|++.|++++|.++|++|.+.|+. ||..+||+||.+|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~---------PdvvTynaLI~gy 517 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE---------ANVHTFGALIDGC 517 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999998888 7778888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHh-cCCCCChhHHHHHHHHHHHcCCHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEK-YGIRPSIEHYGCLVYILGRAGRIAK 159 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~g~~p~~~~~~~li~~~~~~g~~~~ 159 (352)
++.|++++|+++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|... .|+.||..+|++||.+|++.|++++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 888888888888888888888888888888888888888888888888888652 3678888888888888888888888
Q ss_pred HHHHHHhC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 160 AEELIKNM---PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE-LLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 160 A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
|.++|+.| ++.|+..+|+++|.+|++.|++++|.++|++|.+ +..||..+|+.+|++|++.|++++|.+++++|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888887 6678888888888888888888888888888865 5677778888888888888888888888888888
Q ss_pred cCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHHhhhhhhh---------hHHHHHHHhhhCCC------CC
Q 048142 236 RNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKETALNLH---------TEKLAITFGLVSPM------PG 300 (352)
Q Consensus 236 ~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~------~~ 300 (352)
.|+.|+..+|.. ++..|++.|..++|..++.+|.+.+.......+ ...+..+..++..+ |.
T Consensus 678 ~G~~pd~~tyns----LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 678 QGIKLGTVSYSS----LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred cCCCCCHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 888888665554 444488888888888888777543222111111 11111111111100 00
Q ss_pred --CcEEEEcccccccCccchhHHHhhhhcceEE
Q 048142 301 --VLIRIIKNLRVCNDCHTATNIISKVYNRETV 331 (352)
Q Consensus 301 --~~i~~~~~l~~~~~~~~a~~~~~~~~~~~~~ 331 (352)
+-..++..+..+|+.++|.+++.+|...++-
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 1113456677777777777777777766553
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-46 Score=369.43 Aligned_cols=263 Identities=20% Similarity=0.303 Sum_probs=235.6
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+. ||..+||+||.+|
T Consensus 482 y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~---------PD~vTYnsLI~a~ 552 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK---------PDRVVFNALISAC 552 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999998 8888999999999
Q ss_pred HhcCChHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHH
Q 048142 81 AMCGQGNKALEYFYEMQI--RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 158 (352)
++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|++|.+. |+.|+..+|+++|.+|++.|+++
T Consensus 553 ~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHH
Confidence 999999999999999976 578999999999999999999999999999999886 99999999999999999999999
Q ss_pred HHHHHHHhC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 159 KAEELIKNM---PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE-LLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 159 ~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
+|.++|++| ++.||..+|+++|.+|++.|++++|.+++++|.+ +.+|+..+|++||.+|++.|++++|.++|++|.
T Consensus 632 eAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999998 7789999999999999999999999999999876 568888999999999999999999999999999
Q ss_pred hcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHH
Q 048142 235 ERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEK 277 (352)
Q Consensus 235 ~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 277 (352)
+.|+.|+..+++ .++..|++.|..++|.+++.+|...+.
T Consensus 712 ~~g~~PdvvtyN----~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 712 SIKLRPTVSTMN----ALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HcCCCCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 899999866654 455558899999999999988865543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=359.17 Aligned_cols=339 Identities=19% Similarity=0.238 Sum_probs=286.0
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC-------------
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL------------- 67 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l------------- 67 (352)
|++.|++++|+++|++|...|+.||..||++++.+|++.|..+.+.+++..+.+.|+.+|..+++++
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 4677888888888888888888888888888888888888888888888888888888888888887
Q ss_pred ---------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 048142 68 ---------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIR 138 (352)
Q Consensus 68 ---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~ 138 (352)
+|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+. |+.
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~ 357 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFP 357 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999997 999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcchHHHHHHHH
Q 048142 139 PSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE-LLPDNGGSYVILSNRY 217 (352)
Q Consensus 139 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~ 217 (352)
||..+|++||++|+++|++++|.++|++|. +||..+||+||.+|+++|+.++|.++|++|.+ +..||..||+.++++|
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999996 68999999999999999999999999999976 6889999999999999
Q ss_pred hhcCChHHHHHHHHHHHh-cCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHHhhh----hhh---h-----
Q 048142 218 SSSRKWKKVKRIRELMAE-RNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKETA----LNL---H----- 284 (352)
Q Consensus 218 ~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~----~~~---~----- 284 (352)
++.|++++|.++|+.|.+ .|+.|+..+|..++ ..|++.|..++|.+++.+|........ +.. +
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li----~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI----ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH----HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 999999999999999975 69999977766544 459999999999999988753211111 100 0
Q ss_pred hHH-HHHHHhhhCCCCCCcEEEEcccccccCccchhHHHhhhhcceEEe-------ecCCccccccCCc
Q 048142 285 TEK-LAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNIISKVYNRETVV-------MDRNRFHHFKNGS 345 (352)
Q Consensus 285 ~~~-l~~~~~~~~~~~~~~i~~~~~l~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~g~ 345 (352)
.+. ....+++-+.....-+.+++.+..+|+.++|.+++.+|.++++-. --.+..|.|-.|-
T Consensus 513 a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 000 011122222222344567788999999999999999999997632 2224456666654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-46 Score=372.75 Aligned_cols=322 Identities=25% Similarity=0.341 Sum_probs=277.9
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC-------------
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL------------- 67 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l------------- 67 (352)
|+++|++++|+++|++|...|+.||..||+++|.+|++.|+++.|.+++..|.+.|+.||..+++++
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 342 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 048142 68 ---------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIR 138 (352)
Q Consensus 68 ---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~ 138 (352)
||.++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++++.|.+. |+.
T Consensus 343 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~ 421 (857)
T PLN03077 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLI 421 (857)
T ss_pred HHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999997 999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------------
Q 048142 139 PSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPD------------- 205 (352)
Q Consensus 139 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------- 205 (352)
|+..+||+||++|+++|++++|.++|++|. +||.++|+++|.+|+++|+.++|..+|++|.+..+|
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA 500 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHh
Confidence 999999999999999999999999999997 579999999999999999999999999998765444
Q ss_pred ----------------------------------------------------CcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 206 ----------------------------------------------------NGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 206 ----------------------------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
|..+|++||.+|++.|+.++|.++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455677777777788888888888888
Q ss_pred HhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEccccccc
Q 048142 234 AERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCN 313 (352)
Q Consensus 234 ~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~ 313 (352)
.+.|+.||..|+.. ++..+.+.|.++++..+++.|.+. +|+.+...... ++++.|.++|
T Consensus 581 ~~~g~~Pd~~T~~~----ll~a~~~~g~v~ea~~~f~~M~~~----------------~gi~P~~~~y~-~lv~~l~r~G 639 (857)
T PLN03077 581 VESGVNPDEVTFIS----LLCACSRSGMVTQGLEYFHSMEEK----------------YSITPNLKHYA-CVVDLLGRAG 639 (857)
T ss_pred HHcCCCCCcccHHH----HHHHHhhcChHHHHHHHHHHHHHH----------------hCCCCchHHHH-HHHHHHHhCC
Confidence 88888888655544 444477888888888887777632 22222222222 6889999999
Q ss_pred CccchhHHHhhhhcc------eEEeecCCccccccCCc
Q 048142 314 DCHTATNIISKVYNR------ETVVMDRNRFHHFKNGS 345 (352)
Q Consensus 314 ~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~g~ 345 (352)
+.++|.+++.+|+-+ ..++..|+.+.+.+.|.
T Consensus 640 ~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 999999999999754 45566676666666554
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=3.7e-18 Score=155.97 Aligned_cols=258 Identities=12% Similarity=0.024 Sum_probs=208.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
..|++++|+..|+++...+ +.+..++..+...+...|++++|..+++.+.+.+..++. .....|..+...|.+
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------~~~~~~~~La~~~~~ 119 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------QRLLALQELGQDYLK 119 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHH
Confidence 4689999999999999863 235668899999999999999999999999875422111 223578899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----hhHHHHHHHHHHHcCCHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS----IEHYGCLVYILGRAGRIA 158 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~ 158 (352)
.|++++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+. +-.+. ...+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999875 3456778999999999999999999999999875 32222 224566778889999999
Q ss_pred HHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 159 KAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN-GGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 159 ~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
+|...|+++ ...|+ ...+..+...+...|++++|.+.++++.+..|.+ ..+++.++.+|...|++++|.+.++++.+
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999997 33454 6678888899999999999999999998876654 45688999999999999999999999987
Q ss_pred cCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHH
Q 048142 236 RNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEE 275 (352)
Q Consensus 236 ~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 275 (352)
.. |+.... ..+...+.+.|..++|..++..+.+.
T Consensus 278 ~~--p~~~~~----~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 278 EY--PGADLL----LALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred hC--CCchHH----HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 64 543222 34556688999999999998766543
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=9.7e-18 Score=153.19 Aligned_cols=261 Identities=11% Similarity=0.031 Sum_probs=204.1
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGD---KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIV 78 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~ 78 (352)
.+.|++++|+.+++.+...+..++ ..++..+...+.+.|++++|..+|+++.+... ++..+++.++.
T Consensus 80 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~----------~~~~~~~~la~ 149 (389)
T PRK11788 80 RRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD----------FAEGALQQLLE 149 (389)
T ss_pred HHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc----------chHHHHHHHHH
Confidence 467999999999999987543332 35678889999999999999999999987532 56778999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc
Q 048142 79 VLAMCGQGNKALEYFYEMQIRGVKPDA----ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA 154 (352)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 154 (352)
.+.+.|++++|.+.++++.+.+..++. ..+..+...+.+.|++++|...|+++.+. . +.+...+..+...|.+.
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-D-PQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-C-cCCHHHHHHHHHHHHHC
Confidence 999999999999999999886544332 24566777888999999999999999864 2 23466788888999999
Q ss_pred CCHHHHHHHHHhC-CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 155 GRIAKAEELIKNM-PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 155 g~~~~A~~~~~~m-~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
|++++|.++|+++ ...|+ ..+++.+..+|...|++++|...++++.+..|.. ..+..++..+.+.|++++|.++++
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998 33444 4568889999999999999999999998876644 566889999999999999999999
Q ss_pred HHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHHh
Q 048142 232 LMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKE 278 (352)
Q Consensus 232 ~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 278 (352)
++.+. .|+...+..++...+ .....|...++..+++.+......
T Consensus 307 ~~l~~--~P~~~~~~~l~~~~~-~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 307 EQLRR--HPSLRGFHRLLDYHL-AEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHHh--CcCHHHHHHHHHHhh-hccCCccchhHHHHHHHHHHHHHh
Confidence 88765 466443332222211 012378888999988887765433
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=7.4e-17 Score=162.20 Aligned_cols=251 Identities=11% Similarity=0.040 Sum_probs=180.0
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+.+++.+... .+.+..+|..+...+...|++++|...++.+.+... .+...|..+...|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP----------DSALALLLLADAYA 646 (899)
T ss_pred HHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CChHHHHHHHHHHH
Confidence 3456777777777776653 244566777777777777777777777777766432 34456777777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
+.|++++|...|+++.+. .+.+..++..+...+...|++++|..+++.+.+. .+++...+..+...+.+.|++++|.
T Consensus 647 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 647 VMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHH
Confidence 778888888888777764 2334667777777777888888888888877764 2446667777788888888888888
Q ss_pred HHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 162 ELIKNM-PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 162 ~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
..|+.+ ...|+..++..+...+...|++++|.+.++.+.+..|.+...+..+...|...|++++|.+.|+++.+.. |
T Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p 801 (899)
T TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--P 801 (899)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--C
Confidence 888876 4456667777788888888888888888888888888888888888888888899999998888887654 2
Q ss_pred CCceeEEEEcceeehhhhcCcccCchhhhhcC
Q 048142 241 PPGCILIEVDGVVHEFVKAGFVPNKSEVLFDM 272 (352)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 272 (352)
+. ...+..+...+.+.|. +.|..++...
T Consensus 802 ~~---~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 802 DN---AVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred CC---HHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 21 1122334445566777 6677776654
No 10
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.76 E-value=3.1e-19 Score=131.45 Aligned_cols=59 Identities=59% Similarity=1.038 Sum_probs=56.2
Q ss_pred hhhhhhhhHHHHHHHhhhCCCCCCcEEEEccc-ccccCccchhHHHhhhhcceEEeecCCcccccc
Q 048142 278 ETALNLHTEKLAITFGLVSPMPGVLIRIIKNL-RVCNDCHTATNIISKVYNRETVVMDRNRFHHFK 342 (352)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 342 (352)
...+..|+|++|++||++++ ++++|+ |+|+|||+++|++|++.+|+|+|||.+|||||+
T Consensus 57 ~~~~~~HSEKlAiafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 57 EESLCYHSEKLAIAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred hhhhhccHHHHHHHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 55789999999999999998 899999 999999999999999999999999999999997
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.75 E-value=3.4e-16 Score=157.41 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=126.3
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|+..|+++.... +.+...+..+...+.+.|++++|...++++.+... .+..+|..++..+.
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP----------DNTEAQIGLAQLLL 680 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHH
Confidence 35677777777777776542 23556666777777777777777777777766432 34455666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
..|++++|.++++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..+..++.+.|++++|.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666665542 334455555555666666666666666665542 333344555555555556666655
Q ss_pred HHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 162 ELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 162 ~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
+.++++ ....+...+..+...+...|+.++|...|+++.+..|+++.+++.+...+...|+ .+|...+++..+
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 555554 1122344555555555555555555555555555555555555555555555555 445555555443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.64 E-value=4.8e-14 Score=136.16 Aligned_cols=251 Identities=9% Similarity=-0.037 Sum_probs=165.2
Q ss_pred cCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
..|++++|++.|+++... .| +...+..+...+.+.|++++|...++++.+... .+...|..+...+.
T Consensus 88 ~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P----------~~~~a~~~la~~l~ 155 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS----------GNSQIFALHLRTLV 155 (656)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CcHHHHHHHHHHHH
Confidence 457777777777777764 34 455666677777777777777777777776432 34556777777778
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
..|++++|...++++...... +...+..+ ..+...|++++|...++.+.+. .-.++...+..+...+.+.|++++|.
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF-FALERQESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHH
Confidence 888888888877777654222 22223222 3366677888888777776653 22223344445566777788888888
Q ss_pred HHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 162 ELIKNM-PMAL-DHFVLGGLLGACRIHDNLEA----AERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 162 ~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..+++. ...| +...+..+...+...|++++ |...+++..+..|.+...+..+...+...|++++|...+++..+
T Consensus 233 ~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 233 QTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 887776 3334 35666777777788888775 67778887777777777888888888888888888888887766
Q ss_pred cCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCC
Q 048142 236 RNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMD 273 (352)
Q Consensus 236 ~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 273 (352)
.. |+.... ...+...+.+.|..++|...+..+.
T Consensus 313 l~--P~~~~a---~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 313 TH--PDLPYV---RAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred hC--CCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 43 432211 1123344667777777777775544
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.62 E-value=3e-13 Score=130.67 Aligned_cols=254 Identities=9% Similarity=-0.070 Sum_probs=202.9
Q ss_pred ccCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
.+.|++++|++.|++.... .| +...+..+...+...|++++|...++.+...... +...+..+ ..+
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~----------~~~a~~~~-~~l 187 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP----------RGDMIATC-LSF 187 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC----------CHHHHHHH-HHH
Confidence 4679999999999999874 45 5677888999999999999999999988775543 22233333 347
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHH-
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK- 159 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~- 159 (352)
...|++++|...++++....-.++...+..+..++...|++++|...+++..+. -+.+...+..+...|...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhh
Confidence 889999999999999887643344555666678889999999999999999864 23367788889999999999986
Q ss_pred ---HHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 160 ---AEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 160 ---A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
|...|++. ...|+ ...+..+...+...|++++|...+++..+..|.+...+..+...|.+.|++++|.+.++.+.
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78999887 44555 77889999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHH
Q 048142 235 ERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEE 275 (352)
Q Consensus 235 ~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 275 (352)
+.+ |+.... .......+...|..++|...+....+.
T Consensus 346 ~~~--P~~~~~---~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 346 REK--GVTSKW---NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HhC--ccchHH---HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 753 332111 111234577899999999998875443
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.56 E-value=1.1e-14 Score=91.10 Aligned_cols=50 Identities=34% Similarity=0.495 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH 117 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 117 (352)
||+++||+||.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.56 E-value=3.2e-12 Score=123.48 Aligned_cols=253 Identities=12% Similarity=-0.006 Sum_probs=198.8
Q ss_pred CCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKG-LTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+++++|++.|+.....+ ..| +...|+.+...+...|++++|...+++..+... .+...|..+...+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P----------~~~~~~~~la~~~~ 376 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP----------RVTQSYIKRASMNL 376 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------CcHHHHHHHHHHHH
Confidence 478999999999998764 334 456778888888899999999999999987542 34567888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 160 (352)
..|++++|+..|++..+.. +.+...|..+...+...|++++|...|++..+ +.| +...+..+...+.+.|++++|
T Consensus 377 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999988752 33567888899999999999999999999875 345 567788888899999999999
Q ss_pred HHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcch-------HHHHHHHHhhcCChHHHHHHHH
Q 048142 161 EELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGS-------YVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 161 ~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~a~~~~~ 231 (352)
+..|++. ...|+ ...|+.+...+...|++++|++.|++..+..|.+..+ ++.....+...|++++|.++++
T Consensus 453 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 453 MATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999987 44454 7788888999999999999999999988876543222 2223334455799999999999
Q ss_pred HHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHH
Q 048142 232 LMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEE 275 (352)
Q Consensus 232 ~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 275 (352)
+..... |+... ....+...+.+.|..++|..+++...+.
T Consensus 533 kAl~l~--p~~~~---a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 533 KALIID--PECDI---AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhcC--CCcHH---HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 877653 44322 3345677788999999999998775443
No 16
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=7.8e-15 Score=127.77 Aligned_cols=254 Identities=16% Similarity=0.101 Sum_probs=109.5
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTM-VSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
.+.|++++|++++++-.....+|+...| ..+.......++.+.|.+.++++.+.+. -+...+..++..
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~----------~~~~~~~~l~~l- 87 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK----------ANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------cccccccccccc-
Confidence 4679999999999665544324544444 4455566778999999999999988654 233467777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
...+++++|.+++.+..+. .++...+..++..+...++++++..+++.........++...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 6899999999999887654 35667778888899999999999999999876434456888899999999999999999
Q ss_pred HHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 161 EELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 161 ~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
.+.+++. ...|+ ....+.++..+...|+.+++.++++...+..|.|+..+..+..+|...|+.++|...+++....+-
T Consensus 166 ~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 166 LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999987 44564 777888999999999999999999999888788889999999999999999999999999876443
Q ss_pred CCCCceeEEEEcceeehhhhcCcccCchhhhhcCC
Q 048142 239 KKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMD 273 (352)
Q Consensus 239 ~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 273 (352)
. |+ .....+...+...|..+.|..+....-
T Consensus 246 ~-d~----~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 D-DP----LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T--H----HHHHHHHHHHT----------------
T ss_pred c-cc----ccccccccccccccccccccccccccc
Confidence 2 21 122245566889999999998876543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=4.8e-12 Score=122.26 Aligned_cols=218 Identities=11% Similarity=0.013 Sum_probs=137.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGD-KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
..|++++|+..|++.... .|+ ..+|..+...+...|++++|...+++..+... .+...|..+...|.
T Consensus 343 ~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p----------~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 343 LKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS----------EDPDIYYHRAQLHF 410 (615)
T ss_pred HcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHH
Confidence 456777777777776653 343 45666666667777777777777777766432 34456677777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
..|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+. .+.+...++.+...|...|++++|.
T Consensus 411 ~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 7777777777777776641 223455666666677777777777777776642 2224566667777777777777777
Q ss_pred HHHHhC-CCCCc-HHHHH------HHHHHHH-hcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHH
Q 048142 162 ELIKNM-PMALD-HFVLG------GLLGACR-IHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 162 ~~~~~m-~~~p~-~~~~~------~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (352)
+.|++. ...|+ ..++. .....+. ..|++++|.+++++..+..|.+...+..+...+...|++++|.+.|++
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777764 33332 11111 1111222 246777777777777666666666677777777777777777777776
Q ss_pred HHh
Q 048142 233 MAE 235 (352)
Q Consensus 233 m~~ 235 (352)
..+
T Consensus 568 A~~ 570 (615)
T TIGR00990 568 AAE 570 (615)
T ss_pred HHH
Confidence 654
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2.4e-12 Score=111.45 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=167.8
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 102 (352)
+.+..||.++|.++|+-...+.|.+++.+-.....+ .+..+||.+|.+-+-.. -.+++.+|....+.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k---------v~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK---------VYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe---------eeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 347889999999999999999999999998887666 56689999986654222 27899999999999
Q ss_pred CCHhHHHHHHHHHhccCCHHH----HHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHH-HHHHHHh----C------
Q 048142 103 PDAITFVGVLVACSHAGLVDE----RISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK-AEELIKN----M------ 167 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~~~----a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~----m------ 167 (352)
||..|||+++++.++.|+++. |.+++.+|++- |+.|+..+|..+|..+++.++..+ |..++.+ +
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 999999999999999998876 46788999986 999999999999999999887754 4444333 3
Q ss_pred CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCC---cchHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 168 PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLEL-----LPDN---GGSYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 168 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
+..|+ ..-|.+-++.|.+..+.+.|.++...+..+ .+++ ...|..+..+.+.....+.....|+.|.-+-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 34454 566778888888999999999988877654 2332 34566788888899999999999999987777
Q ss_pred CCCCceeE
Q 048142 239 KKPPGCIL 246 (352)
Q Consensus 239 ~p~~~~~~ 246 (352)
-|++++..
T Consensus 430 ~p~~~~m~ 437 (625)
T KOG4422|consen 430 FPHSQTMI 437 (625)
T ss_pred cCCchhHH
Confidence 77755443
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.50 E-value=6.6e-13 Score=119.75 Aligned_cols=213 Identities=13% Similarity=0.121 Sum_probs=93.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 4 DSACEEALLLFREVQHKGLTGD-KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
+|+..+|+..|++..+ +.|+ ...|..|-+.|...+.++.|..-+........ ...+.|..|...|-.
T Consensus 231 ~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp----------n~A~a~gNla~iYye 298 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP----------NHAVAHGNLACIYYE 298 (966)
T ss_pred cchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC----------cchhhccceEEEEec
Confidence 4555555555555554 3343 34555555555555555555555554443221 122233333334444
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 160 (352)
.|.++-|++.+++..+ +.|+ ...|+.|..++-..|++.+|.+.+..... +.| -...-+.|...|...|.+++|
T Consensus 299 qG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred cccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchHH
Confidence 4444444444444433 2333 23344444444444444444444444432 122 223333444444444444444
Q ss_pred HHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 161 EELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 161 ~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
..+|... .+.|. ...++.|...|-+.|++++|+..+++.++..|.-...|+.+.+.|-..|+.+.|.+.+.+.
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 4444433 23333 3334444444444444444444444444444444444444444444444444444444433
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=5.9e-11 Score=99.81 Aligned_cols=200 Identities=14% Similarity=0.053 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
....+..+...+...|++++|.+.+++..+... .+...+..+...|...|++++|.+.+++..+.. +.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~ 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP----------DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNN 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC
Confidence 356677888889999999999999999887542 455678888999999999999999999988753 335
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGA 182 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 182 (352)
...+..+...+...|++++|...+++.............+..+...+...|++++|...+++. ...| +...+..+...
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 567778888899999999999999998864122224556777888899999999999999887 3334 46678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 183 CRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
+...|++++|...+++..+..+.+...+..+...+...|+.++|..+.+.+..
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999998877777777888888889999999999998887754
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.48 E-value=1.5e-11 Score=111.24 Aligned_cols=206 Identities=15% Similarity=0.153 Sum_probs=144.7
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGD-KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVV 79 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~ 79 (352)
|-.+|..+-|++.+++... +.|+ ...|+.|..++-..|++.+|.+.+.+...... .-..+.|.|...
T Consensus 296 YyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p----------~hadam~NLgni 363 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP----------NHADAMNNLGNI 363 (966)
T ss_pred EeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC----------ccHHHHHHHHHH
Confidence 3456777777777777765 3554 56777777777777777777777777776543 223456777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHcCCH
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRAGRI 157 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~ 157 (352)
|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++.. .+.|+ ...|+.+...|-..|++
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 7777777777777777666 4555 4557777777777778887777777775 45664 46677777777777777
Q ss_pred HHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCCh
Q 048142 158 AKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 158 ~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 223 (352)
+.|...+.+. .++|. ...++.|.+.|...|++.+|++.++..++..|+-+..|-.++.+..--.+|
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 7777777765 55666 566777777777788888888888777777777666776666665444443
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.45 E-value=6.5e-11 Score=117.84 Aligned_cols=215 Identities=11% Similarity=0.066 Sum_probs=164.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG 84 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g 84 (352)
|++++|+..|.+.... .|+......+...+...|++++|...++++.... |+...+..+...+.+.|
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~-----------p~~~a~~~la~all~~G 556 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD-----------MSNEDLLAAANTAQAAG 556 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-----------CCcHHHHHHHHHHHHCC
Confidence 6777888877777654 4665544444555568899999999888875432 33345667777888889
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 048142 85 QGNKALEYFYEMQIRGVKPDA-ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEEL 163 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 163 (352)
+.++|...|++..+.. |+. ..+..+.......|++++|...+++..+ ..|+...|..+...+.+.|++++|...
T Consensus 557 d~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 557 NGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998888753 433 3333344444566999999999988874 467788888888889999999999999
Q ss_pred HHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 164 IKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 164 ~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
+++. ...|+ ...++.+...+...|+.++|+..+++..+..|.++..+..+..++...|++++|...+++..+..
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8887 45565 56677777788889999999999999988888888889999999999999999999888876543
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=3.7e-11 Score=109.70 Aligned_cols=245 Identities=10% Similarity=0.001 Sum_probs=147.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMV--SLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.|++++|.+.|.++.+. .|+..... .....+...|+++.|...++++.+... .+......+...|.
T Consensus 131 ~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P----------~~~~al~ll~~~~~ 198 (398)
T PRK10747 131 RGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP----------RHPEVLRLAEQAYI 198 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHH
Confidence 45555555555555432 33332211 122334445555555555555544432 23344555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDA-------ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA 154 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 154 (352)
+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIEC 276 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHC
Confidence 555555555555555554433211 12222222222333334444444444332 233556666778888899
Q ss_pred CCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 155 GRIAKAEELIKNM-PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 155 g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
|+.++|.+++++. ...||.... ++.+....++.+++.+..+...+..|.|+..+..+...+.+.+++++|.+.|+..
T Consensus 277 g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 277 DDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887 444555322 3455556699999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhh
Q 048142 234 AERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLF 270 (352)
Q Consensus 234 ~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 270 (352)
.+.. |+...+. .+...+.+.|..++|..++.
T Consensus 355 l~~~--P~~~~~~----~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 355 LKQR--PDAYDYA----WLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HhcC--CCHHHHH----HHHHHHHHcCCHHHHHHHHH
Confidence 8754 5543322 23444667888777766654
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=8.5e-13 Score=114.96 Aligned_cols=216 Identities=15% Similarity=0.148 Sum_probs=113.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
..++.++|.+.++++...+.. +...+..++.. ...+++++|.+++....+.. ++...+..++..+.+
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-----------~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD-----------GDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc-----------cccchhhHHHHHHHH
Confidence 357899999999999876533 56667777776 78999999999988766543 444567888899999
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHH
Q 048142 83 CGQGNKALEYFYEMQIRG-VKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 160 (352)
.++++++.+++++..... .+++...|..+...+.+.|+.++|...+++..+. .| |....+.++..+...|+.+++
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999987543 3567778888999999999999999999999865 66 578888999999999999998
Q ss_pred HHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 161 EELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 161 ~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
.++++.. ....|+..|..+..++...|+.++|...+++..+..|.|+.+...+.+++...|+.++|.+++.+..
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888776 1134556788899999999999999999999999999999999999999999999999999987654
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.43 E-value=3.4e-11 Score=124.05 Aligned_cols=251 Identities=9% Similarity=-0.018 Sum_probs=191.4
Q ss_pred cCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHH-------
Q 048142 3 EDSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLT------- 74 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~------- 74 (352)
+.|++++|+..|++.... .| +...+..+...+.+.|++++|+..|++..+..... +....|.
T Consensus 281 ~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~--------~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS--------SNRDKWESLLKVNR 350 (1157)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------cchhHHHHHHHhhh
Confidence 569999999999999885 45 78889999999999999999999999998765321 2222222
Q ss_pred -----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHH
Q 048142 75 -----ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLV 148 (352)
Q Consensus 75 -----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li 148 (352)
.+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|++..+. .| +...+..+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---~p~~~~a~~~L~ 426 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---DPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 22446778999999999999999862 335667788899999999999999999999864 44 456667777
Q ss_pred HHHHHcCCHHHHHHHHHhCCCC-Cc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 149 YILGRAGRIAKAEELIKNMPMA-LD----------HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m~~~-p~----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
..|. .++.++|..+++.++.. +. ...+..+...+...|++++|++.+++..+..|.++..+..+...|
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7774 56789999999887311 11 123455667788999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCC
Q 048142 218 SSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMD 273 (352)
Q Consensus 218 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 273 (352)
.+.|++++|...++++.+.. |+..... ......+.+.|..++|...+..+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~--P~~~~~~---~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK--PNDPEQV---YAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC--CCCHHHH---HHHHHHHHhCCCHHHHHHHHHhCC
Confidence 99999999999999987643 3321110 111122346788888888877664
No 26
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=4.9e-13 Score=83.55 Aligned_cols=50 Identities=28% Similarity=0.539 Sum_probs=46.9
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH
Q 048142 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR 153 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 153 (352)
||.++||++|++|++.|++++|.++|++|.+. |+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999987 999999999999999875
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.40 E-value=1.3e-10 Score=119.88 Aligned_cols=258 Identities=13% Similarity=0.059 Sum_probs=183.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC---------------
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL--------------- 67 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------- 67 (352)
+.|++++|++.|++..... +.+...+..+...+...|++++|++.|+++.+....... ....+
T Consensus 363 ~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~-a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN-AVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCHHHHHHH
Confidence 5789999999999998853 335677888889999999999999999999875432100 00000
Q ss_pred ----C--------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHH
Q 048142 68 ----K--------------DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHF 128 (352)
Q Consensus 68 ----~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 128 (352)
+ ....+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|++++|...+
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 0012233445566789999999999998874 454 556777888899999999999999
Q ss_pred HHhhHhcCCCC-ChhHHHHH--------------------------------------------HHHHHHcCCHHHHHHH
Q 048142 129 NLMSEKYGIRP-SIEHYGCL--------------------------------------------VYILGRAGRIAKAEEL 163 (352)
Q Consensus 129 ~~m~~~~g~~p-~~~~~~~l--------------------------------------------i~~~~~~g~~~~A~~~ 163 (352)
+++.+. .| +...+..+ ...+...|+.++|..+
T Consensus 519 ~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 519 RRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 998753 23 33222222 2334455555666665
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCc
Q 048142 164 IKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPG 243 (352)
Q Consensus 164 ~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 243 (352)
++.-+ ++...+..+...+...|+.++|+..|++..+..|.++..+..+...|...|++++|.+.++...+. .|+..
T Consensus 596 l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~ 671 (1157)
T PRK11447 596 LRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSL 671 (1157)
T ss_pred HHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCCh
Confidence 55332 234566677888899999999999999999999999999999999999999999999999987653 33321
Q ss_pred eeEEEEcceeehhhhcCcccCchhhhhcCCH
Q 048142 244 CILIEVDGVVHEFVKAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 274 (352)
. ....+...+...|+.++|.++++.+..
T Consensus 672 ~---~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 672 N---TQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred H---HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 1 112233456688999999998887654
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.3e-11 Score=110.85 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=174.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-C-CCccccccC----------------
Q 048142 6 ACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNI-E-VDVGLGMAL---------------- 67 (352)
Q Consensus 6 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~-~~~~~~~~l---------------- 67 (352)
+.++|+..|.....+ +.-+......+-.+|...+++++|+++|+.+.+... . .+..++.+.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457889999885543 333445556788899999999999999999887431 1 112222222
Q ss_pred ------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC
Q 048142 68 ------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS 140 (352)
Q Consensus 68 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 140 (352)
-...+|.++.++|.-+++.+.|++.|++..+ +.| .+++|+.+-.-+.....+|.|...|+... ..|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 4557899999999999999999999999887 566 67888888888888899999999888765 336
Q ss_pred hhHHHH---HHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 048142 141 IEHYGC---LVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSN 215 (352)
Q Consensus 141 ~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 215 (352)
+.+||+ |.-.|.+.++++.|+-.|++. .+.|. .+....+...+-+.|+.|+|++++++....+|.|+-.--..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 666666 455688999999999999887 66665 5555666677888899999999999998888888888778888
Q ss_pred HHhhcCChHHHHHHHHHHHhc
Q 048142 216 RYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 216 ~~~~~g~~~~a~~~~~~m~~~ 236 (352)
.+...+++++|.+.++++++.
T Consensus 566 il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh
Confidence 888899999999999999764
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.38 E-value=3.8e-10 Score=112.44 Aligned_cols=219 Identities=13% Similarity=0.096 Sum_probs=182.4
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
+.|++++|...|+++... .|+...+..+..++.+.|++++|...+++..+... ++...+..+.....+
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P----------~~~~l~~~La~~l~~ 588 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL----------GDNALYWWLHAQRYI 588 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------ccHHHHHHHHHHHHh
Confidence 579999999999998653 55566677778888999999999999999988653 233344444445556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~ 161 (352)
.|++++|...|++..+ ..|+...|..+..++.+.|+.++|...+++... ..| +...++.+...+...|++++|.
T Consensus 589 ~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 589 PGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 7999999999999987 567888899999999999999999999999985 356 6778888888999999999999
Q ss_pred HHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 162 ELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 162 ~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
..+++. ...|+ ...+..+..++...|++++|+..+++..+..|.+..+.-.......+..+++.+.+-++.-...++
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999987 44554 778899999999999999999999999999998888888888888888888888888776655443
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=9.1e-11 Score=107.62 Aligned_cols=224 Identities=12% Similarity=-0.063 Sum_probs=126.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 048142 33 LLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVL 112 (352)
Q Consensus 33 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 112 (352)
...+...|+++.|.+.++.+.+... .+...+..+...|.+.|++++|.+++..+.+.+..+.......-.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P----------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAP----------RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ 229 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3333444555555555555444432 233345555555666666666666666665554332221111111
Q ss_pred HHH---hccCCHHHHHHHHHHhhHhc--CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHH---HHHHHHHH
Q 048142 113 VAC---SHAGLVDERISHFNLMSEKY--GIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMALDHFV---LGGLLGAC 183 (352)
Q Consensus 113 ~~~---~~~g~~~~a~~~~~~m~~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~---~~~li~~~ 183 (352)
.++ ...+..+++...+..+.+.. ....++..+..+...+...|+.++|.+++++. ...||... ........
T Consensus 230 ~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~ 309 (409)
T TIGR00540 230 KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR 309 (409)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh
Confidence 111 11111122222333333210 01126667777777888888888888888887 44455432 12222233
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCc
Q 048142 184 RIHDNLEAAERAAQQLLELLPDNG--GSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGF 261 (352)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~ 261 (352)
...++.+.+.+.++...+..|.|+ ....++...+.+.|++++|.+.|+........|++..+. .+...+.+.|.
T Consensus 310 l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~----~La~ll~~~g~ 385 (409)
T TIGR00540 310 LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA----MAADAFDQAGD 385 (409)
T ss_pred cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH----HHHHHHHHcCC
Confidence 445778888888888888888888 777788888999999999999998655544556644322 34555667888
Q ss_pred ccCchhhhh
Q 048142 262 VPNKSEVLF 270 (352)
Q Consensus 262 ~~~~~~~~~ 270 (352)
.++|.+++.
T Consensus 386 ~~~A~~~~~ 394 (409)
T TIGR00540 386 KAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHH
Confidence 777777765
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=2.2e-10 Score=99.56 Aligned_cols=227 Identities=12% Similarity=0.110 Sum_probs=167.7
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCChHHH-HHHHHHHHHcCCCCCcc-----c----cccC-Cc
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLAC--THLGALEVG-MWLHPYIMKKNIEVDVG-----L----GMAL-KD 69 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~--~~~g~~~~a-~~~~~~m~~~g~~~~~~-----~----~~~l-~~ 69 (352)
.+|.+.++.-+|+.|+..|+..+...-..|+..- ....++--+ ++-|-.|.+.|-..... + ...+ .+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 3567788888999999988877766655555432 233332222 23344444443221110 0 0000 56
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
..+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-+- .....+..+|... .+.||..|+|++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisq-km~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQ-KMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHh-hcCCchHhHHHHHH
Confidence 789999999999999999999999999998899999999999987543 3347889999996 99999999999999
Q ss_pred HHHHcCCHHHHHH----HHHhC---CCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH---h------CCCCcchHHH
Q 048142 150 ILGRAGRIAKAEE----LIKNM---PMALDHFVLGGLLGACRIHDNLE-AAERAAQQLLE---L------LPDNGGSYVI 212 (352)
Q Consensus 150 ~~~~~g~~~~A~~----~~~~m---~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~---~------~~~~~~~~~~ 212 (352)
+.++.|+++.|.. ++.+| |++|+..+|..+|.-+++.++.. .+......+.. + .|.+...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999999887544 44444 99999999999999999888864 35555555432 1 4556677888
Q ss_pred HHHHHhhcCChHHHHHHHHHHH
Q 048142 213 LSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~m~ 234 (352)
.++.|.+..+.+-|.++..-+.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~ 383 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLK 383 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999999887765
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=8.6e-10 Score=92.65 Aligned_cols=188 Identities=18% Similarity=0.090 Sum_probs=153.2
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|++++|.+.|++..... +.+...+..+...+...|++++|.+.+++..+... .+...+..+...+.
T Consensus 42 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----------~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 42 LEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP----------NNGDVLNNYGTFLC 110 (234)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----------CCHHHHHHHHHHHH
Confidence 46799999999999998753 33577888889999999999999999999988653 44567888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
..|++++|.+.|++.......| ....+..+...+...|++++|...+.+..+. .+.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998753222 3456777888899999999999999998864 223567788899999999999999
Q ss_pred HHHHHhC-CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 048142 161 EELIKNM-PM-ALDHFVLGGLLGACRIHDNLEAAERAAQQLLEL 202 (352)
Q Consensus 161 ~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (352)
...+++. .. ..+...+..+...+...|+.+.|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999986 22 234666777788888999999999998887654
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=1.3e-10 Score=108.96 Aligned_cols=227 Identities=15% Similarity=0.117 Sum_probs=117.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC---------------CcHHHHHHH
Q 048142 12 LLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL---------------KDVMTLTAL 76 (352)
Q Consensus 12 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---------------~~~~~~~~l 76 (352)
.++..|...|+.|+.+||.++|..||..|+.+.|- +|..|.-........+++++ |...+|++|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 45677889999999999999999999999999998 99988876665444333333 555666666
Q ss_pred HHHHHhcCChHHHHHHHHH-HH-------HcCCCCCHhHHHHHHHHH--------------hccCCHHHHHHHHHHhhHh
Q 048142 77 IVVLAMCGQGNKALEYFYE-MQ-------IRGVKPDAITFVGVLVAC--------------SHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~--------------~~~g~~~~a~~~~~~m~~~ 134 (352)
..+|...||..- ++..++ |. ..|+..-..-|-..+.++ ...|.++.+.+++..+...
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 666666666543 222222 11 112111111111111111 1112222222222222111
Q ss_pred cCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcchHHH
Q 048142 135 YGIRPSIEHYGCLVYILGR-AGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE-LLPDNGGSYVI 212 (352)
Q Consensus 135 ~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~ 212 (352)
....|..+ .++-... ...+++-..+-+.....|+..+|..++..-..+|+.+.|..++.+|++ +.|-+...|-.
T Consensus 169 a~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 169 AWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred cccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 00001100 0111111 122333333333332246666666666666666666666666666654 45555554555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEE
Q 048142 213 LSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILI 247 (352)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 247 (352)
|+-+ .++..-+..+++-|.+.|+.|+..|+..
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 5444 5666666666666666666666555543
No 34
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=5.5e-10 Score=102.46 Aligned_cols=229 Identities=19% Similarity=0.167 Sum_probs=173.4
Q ss_pred CccCCChhHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHc---CCCCCccccccCCcH
Q 048142 1 YVEDSACEEALLLFREVQHK-----G-LTGDKVT-MVSLLLACTHLGALEVGMWLHPYIMKK---NIEVDVGLGMALKDV 70 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~ 70 (352)
|...|+++.|..+|++.... | ..|...+ .+.+...|...+++++|..+|+++... ...++.. .-.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~-----~va 283 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP-----AVA 283 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH-----HHH
Confidence 56789999999999988764 2 1344333 344777889999999999999998753 1111110 234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCCHh-HHHHHHHHHhccCCHHHHHHHHHHhhHhcC--CCCC-
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQI-----RGV-KPDAI-TFVGVLVACSHAGLVDERISHFNLMSEKYG--IRPS- 140 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g--~~p~- 140 (352)
.+++.|-.+|.+.|++++|...+++..+ .|. .|... -++.+...|+..+++++|..+++...+.+. ..++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 5688899999999999999988887653 122 23333 367788889999999999999988776543 2222
Q ss_pred ---hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----
Q 048142 141 ---IEHYGCLVYILGRAGRIAKAEELIKNM---------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLEL----- 202 (352)
Q Consensus 141 ---~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 202 (352)
..+++.|-..|-..|++++|.+++++. +..+. ....+.|...|.+.+.+.+|.++|.+....
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999887 22233 456788888999999999999999986542
Q ss_pred --CCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 203 --LPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 203 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
.|....+|..|...|...|++++|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34445788999999999999999999988775
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=1.5e-09 Score=103.32 Aligned_cols=212 Identities=12% Similarity=0.012 Sum_probs=159.7
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHH
Q 048142 5 SACEEALLLFREVQHKGLTGD-KVTMVSLLLACT---------HLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLT 74 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~---------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 74 (352)
+..++|+++|++.... .|+ ...|..+..++. ..+++++|...+++..+.+. .+...|.
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP----------~~~~a~~ 342 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH----------NNPQALG 342 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC----------CCHHHHH
Confidence 3467899999988874 564 455555554443 23457899999999988654 4667888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh-hHHHHHHHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI-EHYGCLVYILG 152 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~ 152 (352)
.+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+ +.|+. ..+..+...+.
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHH
Confidence 8888899999999999999999885 454 56788888899999999999999999875 35543 33344455567
Q ss_pred HcCCHHHHHHHHHhC--CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHH
Q 048142 153 RAGRIAKAEELIKNM--PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRI 229 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m--~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 229 (352)
..|++++|...+++. ...|+ +..+..+...+...|+.++|...++++....|.+....+.+...|...| +.|...
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~ 495 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPT 495 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHH
Confidence 789999999999886 22354 4456677778889999999999999887766666666777777788888 477777
Q ss_pred HHHHHh
Q 048142 230 RELMAE 235 (352)
Q Consensus 230 ~~~m~~ 235 (352)
++.+.+
T Consensus 496 l~~ll~ 501 (553)
T PRK12370 496 IREFLE 501 (553)
T ss_pred HHHHHH
Confidence 777654
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=3.4e-09 Score=101.00 Aligned_cols=214 Identities=16% Similarity=0.008 Sum_probs=158.5
Q ss_pred CCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 4 DSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
.+++++|...+++.... .| +...+..+...+...|++++|...+++..+.+. .+...|..+...+..
T Consensus 317 ~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P----------~~~~a~~~lg~~l~~ 384 (553)
T PRK12370 317 QNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP----------ISADIKYYYGWNLFM 384 (553)
T ss_pred chHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHH
Confidence 45689999999999875 45 677888888888999999999999999998763 345678889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDA-ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 160 (352)
.|++++|+..+++..+. .|+. ..+..++..+...|++++|...+++..+. ..| ++..+..+..+|...|++++|
T Consensus 385 ~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 385 AGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred CCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999885 4543 23334454566789999999999998764 234 455677788889999999999
Q ss_pred HHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 161 EELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELL--PDNGGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 161 ~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
...+.++ +..|+ ...++.+...+...| +.|...++.+.+.. .+....+ +-..|+-.|+-+.+..+ +++.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 461 RKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 9999987 44455 344555556677777 58888888876532 1221222 44455666777777666 777765
Q ss_pred CC
Q 048142 237 NI 238 (352)
Q Consensus 237 g~ 238 (352)
|.
T Consensus 536 ~~ 537 (553)
T PRK12370 536 DN 537 (553)
T ss_pred ch
Confidence 43
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=3e-10 Score=103.70 Aligned_cols=200 Identities=13% Similarity=0.033 Sum_probs=166.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
.+.||-++-+.|+-+++.+.|++.|+...+.+. ....+|+.+..-+.....+|.|...|+.... +.|.
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp----------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP----------RFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC----------ccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 578899999999999999999999999987553 4778999999999999999999999998765 3333
Q ss_pred -HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHH
Q 048142 105 -AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLL 180 (352)
Q Consensus 105 -~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li 180 (352)
..+|-.|...|.+.++++.|.-.|+... .+.| +.+..-.+...+-+.|+.|+|++++++. ...| |+..---..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 3345567788999999999999999887 5677 5666667778889999999999999997 2232 344434455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 181 GACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
..+...++.++|.+.++++++..|.+...|..+...|-+.|+.+.|+.-|.-+.+..-+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 66778899999999999999999999999999999999999999999998887665443
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.25 E-value=3e-09 Score=105.13 Aligned_cols=250 Identities=14% Similarity=0.062 Sum_probs=182.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
..|+.++|++++.+..... +.+...+..+..++...|++++|.+++++..+... .+...+..+...+..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P----------~~~~a~~~la~~l~~ 95 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP----------QNDDYQRGLILTLAD 95 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHH
Confidence 4689999999999998632 44566789999999999999999999999988643 445667888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~ 161 (352)
.|++++|+..+++..+. .+.+.. +..+..++...|+.++|...++++.+. .| +...+..+..++.+.|..++|+
T Consensus 96 ~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999886 333455 888888999999999999999999864 55 5666677888899999999999
Q ss_pred HHHHhCCCCCcHH------HHHHHHHHHH-----hcCCH---HHHHHHHHHHHHhCCCCcch---HH----HHHHHHhhc
Q 048142 162 ELIKNMPMALDHF------VLGGLLGACR-----IHDNL---EAAERAAQQLLELLPDNGGS---YV----ILSNRYSSS 220 (352)
Q Consensus 162 ~~~~~m~~~p~~~------~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~---~~----~li~~~~~~ 220 (352)
..++.....|+.. ....++.... ..+++ ++|+..++.+.+..+.++.. +. ..+.++...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 9999886555421 1122222222 12223 77888888887654333322 21 113345677
Q ss_pred CChHHHHHHHHHHHhcCCC-CCCceeEEEEcceeehhhhcCcccCchhhhhcCC
Q 048142 221 RKWKKVKRIRELMAERNIK-KPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMD 273 (352)
Q Consensus 221 g~~~~a~~~~~~m~~~g~~-p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 273 (352)
|++++|...|+.+.+.+.. |+..-.+ +...+...|..+.|...+..+.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~-----la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRW-----VASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHH-----HHHHHHhcCCcHHHHHHHHHHh
Confidence 9999999999999887632 3211111 2335778899999998887654
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.21 E-value=9.9e-09 Score=101.53 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCc-HHHHHHHHHHH
Q 048142 8 EEALLLFREVQHK-GLTGDKV-TMV----SLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKD-VMTLTALIVVL 80 (352)
Q Consensus 8 ~~A~~~~~~m~~~-g~~p~~~-t~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~-~~~~~~li~~~ 80 (352)
++|++.++.+... ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.. . |+ ...| +...|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~--~------P~~a~~~--la~~y 282 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI--I------PPWAQRW--VASAY 282 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--C------CHHHHHH--HHHHH
Confidence 7788899988854 2233321 111 1134456779999999999999887531 1 32 2333 46789
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcC----------CCCC---hhHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKP---DAITFVGVLVACSHAGLVDERISHFNLMSEKYG----------IRPS---IEHY 144 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g----------~~p~---~~~~ 144 (352)
...|++++|+..|+++....-.. .......+..++...|++++|..+++.+..... -.|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999987642111 123466677788999999999999999986410 1122 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCC
Q 048142 145 GCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 222 (352)
..+...+...|++++|+++++++ ...| +...+..+...+...|++++|++.+++..+..|.+...+..+...+.+.|+
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 66778899999999999999997 3344 477888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 048142 223 WKKVKRIRELMAER 236 (352)
Q Consensus 223 ~~~a~~~~~~m~~~ 236 (352)
+++|.++++++.+.
T Consensus 443 ~~~A~~~~~~ll~~ 456 (765)
T PRK10049 443 WRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.8e-09 Score=92.19 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=137.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVY 149 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~ 149 (352)
|...+.+-|+-.++.++|...|++..+. .|. ...|+.+-.-|...++...|.+-++...+ +.| |-..|-.|.+
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQ 406 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhH
Confidence 5566677788888999999999998874 444 56788999999999999999999999874 455 8889999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHH
Q 048142 150 ILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVK 227 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 227 (352)
+|.-.+...=|+-+|++. ..+| |...|.+|-.+|.+.++.++|++.|+........+...+..|.+.|-+.++.++|.
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999987 5566 58999999999999999999999999988866667789999999999999999999
Q ss_pred HHHHHHHh
Q 048142 228 RIRELMAE 235 (352)
Q Consensus 228 ~~~~~m~~ 235 (352)
+.|.+-.+
T Consensus 487 ~~yek~v~ 494 (559)
T KOG1155|consen 487 QYYEKYVE 494 (559)
T ss_pred HHHHHHHH
Confidence 99887654
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.19 E-value=8.7e-09 Score=94.14 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=169.5
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcH-----HHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDV-----MTLTAL 76 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~-----~~~~~l 76 (352)
.+.|++++|++.++++.... +-+......+...+.+.|++++|.+++..+.+.+..++ ... ..|..+
T Consensus 164 l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-------~~~~~l~~~a~~~l 235 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-------EHRAMLEQQAWIGL 235 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHH
Confidence 35799999999999998864 23677888899999999999999999999999875421 111 244455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 77 IVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
+.......+.+...++++.+.+. .+.+......+...+...|+.++|..++++..+. .|+... .++.+....++
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~ 309 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNN 309 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCC
Confidence 55555556667777777776543 4557778889999999999999999999888753 455522 23344445699
Q ss_pred HHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 157 IAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 157 ~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
.+++.+..++. ...|+ +..+..+...+...+++++|.+.|+...+..| +..+|..+...+.+.|+.++|.+++++-.
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999887 44565 55677788899999999999999999988765 45678899999999999999999999764
Q ss_pred h
Q 048142 235 E 235 (352)
Q Consensus 235 ~ 235 (352)
.
T Consensus 389 ~ 389 (398)
T PRK10747 389 M 389 (398)
T ss_pred h
Confidence 3
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=8.7e-09 Score=90.42 Aligned_cols=206 Identities=11% Similarity=0.076 Sum_probs=166.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
.+|++++|.+.+++.....-.-....||+=+ .+-..|++++|++.|-++...-. .++...-.+.+.|-.
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~----------nn~evl~qianiye~ 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILL----------NNAEVLVQIANIYEL 570 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHH
Confidence 4799999999999998764333334445433 34778999999999877654322 455667778888999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
..+...|++++.+.... ++.|+...+-|...|-+.|+-.+|++.+-+--+ =++.+..+...|...|....-+++|..
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999766553 555678889999999999999999988766532 234478888888889999999999999
Q ss_pred HHHhC-CCCCcHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCC
Q 048142 163 LIKNM-PMALDHFVLGGLLGAC-RIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 163 ~~~~m-~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 222 (352)
+|++. -++|+..-|..||.+| .+.|++.+|.++++......|.|......|++.+...|-
T Consensus 648 y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 648 YFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99998 5789999999999766 568999999999999999999999999999998887774
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=1.8e-08 Score=88.27 Aligned_cols=216 Identities=13% Similarity=0.089 Sum_probs=157.1
Q ss_pred CCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKG-LTGD--KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
.+..+.++.-+.++.... ..|+ ...|..+-..+.+.|+.++|...|.+..+... .+...|+.+...|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P----------~~~~a~~~lg~~~ 108 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP----------DMADAYNYLGIYL 108 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHH
Confidence 355677888888887532 2232 35577788888999999999999999988653 4667899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK 159 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 159 (352)
...|++++|.+.|++..+ +.|+ ..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++
T Consensus 109 ~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~ 183 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQ 183 (296)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHH
Confidence 999999999999999987 4554 567888888899999999999999998864 5543222222333456788999
Q ss_pred HHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 160 AEELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE-------LLPDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 160 A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
|...|++. ...|+...| .+. ....|+...+ +.++.+.+ ..|.....|..+...+.+.|++++|...|
T Consensus 184 A~~~l~~~~~~~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 184 AKENLKQRYEKLDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred HHHHHHHHHhhCCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999764 223333222 222 2334555443 34455443 23344568999999999999999999999
Q ss_pred HHHHhcCC
Q 048142 231 ELMAERNI 238 (352)
Q Consensus 231 ~~m~~~g~ 238 (352)
++..+.++
T Consensus 260 ~~Al~~~~ 267 (296)
T PRK11189 260 KLALANNV 267 (296)
T ss_pred HHHHHhCC
Confidence 99987664
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=3.7e-09 Score=97.06 Aligned_cols=243 Identities=15% Similarity=0.128 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCCCccccccCCcHHHH-HHHHHHHHhcCChHHHHHHHHHHHHc--
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKK---NIEVDVGLGMALKDVMTL-TALIVVLAMCGQGNKALEYFYEMQIR-- 99 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~-- 99 (352)
..+...|...|...|+++.|..++.+..+. +...+. |.+.+- +.+...|...+++++|..+|+++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h------l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH------LVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 456677999999999999999999987764 111111 555443 44778899999999999999998642
Q ss_pred ---C-CCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhc----CCCC-Ch-hHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 048142 100 ---G-VKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKY----GIRP-SI-EHYGCLVYILGRAGRIAKAEELIKNM- 167 (352)
Q Consensus 100 ---g-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~----g~~p-~~-~~~~~li~~~~~~g~~~~A~~~~~~m- 167 (352)
| ..|. ..+++.|-.+|.+.|++++|...+++..+-+ |..+ .+ ..++.+...++..+++++|..+++..
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2 2222 4567888889999999999988887765432 2222 22 33566777788899999999998765
Q ss_pred --------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 168 --------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLEL--------LPDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 168 --------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
...|. ..+++.|-..|...|++++|++++++.... .+.....++.|...|.+.++.++|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 12222 568999999999999999999999997542 1223456788889999999999999999
Q ss_pred HHHHh--cCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCH
Q 048142 231 ELMAE--RNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 231 ~~m~~--~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 274 (352)
.+-.. .-+.|+..+...++.++...|...|+.++|.++...+..
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 87643 334466555666778899999999999999999887653
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=5e-08 Score=82.23 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=168.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
+.++++|.++|-+|.+.. +-+..+-.+|-+.|-+.|..+.|++++..+.++.-.+.. --...--.|..-|...
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~------qr~lAl~qL~~Dym~a 120 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE------QRLLALQQLGRDYMAA 120 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH------HHHHHHHHHHHHHHHh
Confidence 568899999999999842 224455567889999999999999999998874211000 1123345667778899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----hhHHHHHHHHHHHcCCHHH
Q 048142 84 GQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS----IEHYGCLVYILGRAGRIAK 159 (352)
Q Consensus 84 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~ 159 (352)
|-++.|..+|..+.+.|.. -......|+..|-...++++|+++-+++.+- +-.+. ...|--|...+....+++.
T Consensus 121 Gl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999875422 3445678999999999999999999988864 43332 1233344445556778999
Q ss_pred HHHHHHhC-CCCCcHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 160 AEELIKNM-PMALDHFVLG-GLLGACRIHDNLEAAERAAQQLLELLPD-NGGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 160 A~~~~~~m-~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
|..++++. ...|..+=-+ .+-......|+++.|.+.++.+.+..|. -+.+-..|..+|...|+.++....+..+.+.
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999887 3344433333 3446788999999999999999887654 3356778899999999999999999998775
Q ss_pred CCCCC
Q 048142 237 NIKKP 241 (352)
Q Consensus 237 g~~p~ 241 (352)
...++
T Consensus 279 ~~g~~ 283 (389)
T COG2956 279 NTGAD 283 (389)
T ss_pred cCCcc
Confidence 54443
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=9.2e-09 Score=86.74 Aligned_cols=220 Identities=10% Similarity=-0.034 Sum_probs=182.1
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHH-HHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTL-TALIVV 79 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~~li~~ 79 (352)
|.+-|.+.+|...|+.-... .|-..||..|-.+|.+..+...|+.++.+-.+.- |-.+|| .-+...
T Consensus 233 ylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-----------P~~VT~l~g~ARi 299 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-----------PFDVTYLLGQARI 299 (478)
T ss_pred HHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-----------CchhhhhhhhHHH
Confidence 34678899999999888775 6777888899999999999999999998876643 444555 345577
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK 159 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 159 (352)
+-..++.++|.++++...+. .+.+.....++...|.-.++++-|.++++++.+. |+. ++..|+.+.-+|.-.+++|-
T Consensus 300 ~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhh
Confidence 77889999999999998875 3445666677777888889999999999999985 755 67788888888888999999
Q ss_pred HHHHHHhC---CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 160 AEELIKNM---PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 160 A~~~~~~m---~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
++.-|++. -.+|+ ..+|-.+-......||...|.+.|+..+..++.+...+|.|.-.-.+.|++++|..++....
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 99998876 22344 56788888888899999999999999999999999999999999999999999999999876
Q ss_pred hc
Q 048142 235 ER 236 (352)
Q Consensus 235 ~~ 236 (352)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 53
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.08 E-value=5e-08 Score=89.62 Aligned_cols=217 Identities=10% Similarity=-0.043 Sum_probs=156.5
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHH----HHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLT----ALIV 78 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~----~li~ 78 (352)
+.|+++.|++.++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+.. +...+. ....
T Consensus 165 ~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~----------~~~~~~~l~~~a~~ 233 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF----------DDEEFADLEQKAEI 233 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHH
Confidence 4799999999999999864 226678889999999999999999999999998753 222221 1111
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC---CCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHH-HHHHHHH--H
Q 048142 79 VLAMCGQGNKALEYFYEMQIRGV---KPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHY-GCLVYIL--G 152 (352)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-~~li~~~--~ 152 (352)
++...+..+++.+.+..+..... +.+...+..+...+...|+.++|..++++..+. .||.... ..++..+ .
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhc
Confidence 22333334444456666655421 137778888999999999999999999999875 4443311 0133333 3
Q ss_pred HcCCHHHHHHHHHhC-CCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHH--HHHhCCCCcchHHHHHHHHhhcCChHHH
Q 048142 153 RAGRIAKAEELIKNM-PMALDH---FVLGGLLGACRIHDNLEAAERAAQQ--LLELLPDNGGSYVILSNRYSSSRKWKKV 226 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m-~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~a 226 (352)
..++.+.+.+.++.. ...|+. ....++...+.+.|++++|.+.|+. ..+. .|+...+..+...+.+.|+.++|
T Consensus 311 ~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 357788888888776 334543 4566788889999999999999995 4334 45666788999999999999999
Q ss_pred HHHHHHHH
Q 048142 227 KRIRELMA 234 (352)
Q Consensus 227 ~~~~~~m~ 234 (352)
.+++++-.
T Consensus 390 ~~~~~~~l 397 (409)
T TIGR00540 390 AAMRQDSL 397 (409)
T ss_pred HHHHHHHH
Confidence 99999753
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=9.6e-08 Score=82.75 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=146.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC----------------
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL---------------- 67 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---------------- 67 (352)
.|++..|+++..+-.+.+-.| ...|..-..+-.+.|+.+.+-..+.+.-+.--.++..+.-+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777666655554333 334555555556666666666666665553212111000000
Q ss_pred ---------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHhccCCHHHHHHHHHHh
Q 048142 68 ---------KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA-------ITFVGVLVACSHAGLVDERISHFNLM 131 (352)
Q Consensus 68 ---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m 131 (352)
.+...-.....+|.+.|++.+...++.+|.+.|.--|. .+|..+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 33445556666666666666666666666666543332 34555555555555555545555555
Q ss_pred hHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchH
Q 048142 132 SEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSY 210 (352)
Q Consensus 132 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 210 (352)
.++ ..-++..-.+++.-+.++|+.++|.++.++. +-.-|.. -...-.+.+-++.+.-++..++-.+..|.++..+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 442 3344555567777888888888888887765 2222333 1122345556666666666666666667777777
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhh
Q 048142 211 VILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVL 269 (352)
Q Consensus 211 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 269 (352)
.+|...|.+.+.|.+|.+.|+... ..+|+..++. .+.+.|-+.|....+.++.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~----~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAAL--KLRPSASDYA----ELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHH----HHHHHHHHcCChHHHHHHH
Confidence 788888888888888888887443 3445444333 2344466667666555554
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=1.6e-07 Score=82.34 Aligned_cols=193 Identities=11% Similarity=-0.114 Sum_probs=139.2
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.+.|+...+... .+...|..+..++.
T Consensus 75 ~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P----------~~~~a~~~lg~~l~ 143 (296)
T PRK11189 75 DSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP----------TYNYAYLNRGIALY 143 (296)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHH
Confidence 45799999999999998853 23678999999999999999999999999988653 34568888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH-
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA- 160 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A- 160 (352)
..|++++|++.|++..+. .|+..........+...++.++|...|.+... ...|+...+ .+. +...|+.+++
T Consensus 144 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~--~~~lg~~~~~~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIV--EFYLGKISEET 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHH--HHHccCCCHHH
Confidence 999999999999999874 45543222222334457789999999977654 334443222 222 2335555443
Q ss_pred -HHHHHhC-CCC----C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHH
Q 048142 161 -EELIKNM-PMA----L-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVI 212 (352)
Q Consensus 161 -~~~~~~m-~~~----p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 212 (352)
...+.+- ... | ....|..+...+...|+.++|...|++..+..|++-.-+-.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3222221 111 2 24578889999999999999999999999988877555443
No 50
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.02 E-value=1.8e-07 Score=91.83 Aligned_cols=195 Identities=13% Similarity=0.029 Sum_probs=153.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcC----CCCChhHHHHHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYG----IRPSIEHYGCLVYI 150 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g----~~p~~~~~~~li~~ 150 (352)
-.+-++.+.+++.++++.|+.|...|.+....+-..+.++|...+.+++|..+++++....+ ..++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 34567778899999999999999988765556888999999999999999999999876422 23345556789999
Q ss_pred HHHcCCHHHHHHHHHhC----C------------CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHH
Q 048142 151 LGRAGRIAKAEELIKNM----P------------MALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVIL 213 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m----~------------~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 213 (352)
|...+++++|..+++++ | -.|| ...+..++..+...|+.++|++.++++....|.|......+
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~ 456 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL 456 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999988 1 1233 23345566778899999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCH
Q 048142 214 SNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDE 274 (352)
Q Consensus 214 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 274 (352)
.+.+...|...+|.+.++..... .|+... +-.+........|..+.|..+++.+.+
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~---~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESL--APRSLI---LERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhh--CCccHH---HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999999766544 454211 112344556677888888887765543
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.5e-07 Score=83.59 Aligned_cols=215 Identities=15% Similarity=0.074 Sum_probs=167.9
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
.|+.-.|.+-|+........++ ..|.-+..+|....+.++....|....+.+. .. || +|-.=...+.-.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp--~n------~d--vYyHRgQm~flL 407 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP--EN------PD--VYYHRGQMRFLL 407 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC--CC------Cc--hhHhHHHHHHHH
Confidence 5788888888888887543332 2277777889999999999999999988553 22 44 455555555667
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 84 GQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 84 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
+++++|..=|++.+. +.| +...|..+--+.-+.++++++...|++.+++ ++.-+.+|+-....+...+++++|.+
T Consensus 408 ~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 408 QQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 789999999999887 444 4566777777777899999999999999985 55667889999999999999999999
Q ss_pred HHHhC-CCCCc---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHH
Q 048142 163 LIKNM-PMALD---------HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 163 ~~~~m-~~~p~---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (352)
.|+.. ...|+ +.+-..++-.-- .+++..|+.++++..+.+|.....|.+|...-.+.|+.++|.++|++
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99876 33333 223333332222 38899999999999999999999999999999999999999999997
Q ss_pred HH
Q 048142 233 MA 234 (352)
Q Consensus 233 m~ 234 (352)
-.
T Consensus 563 sa 564 (606)
T KOG0547|consen 563 SA 564 (606)
T ss_pred HH
Confidence 54
No 52
>PF12854 PPR_1: PPR repeat
Probab=98.92 E-value=1.7e-09 Score=60.99 Aligned_cols=32 Identities=34% Similarity=0.559 Sum_probs=17.1
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 136 GIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 136 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=3.5e-07 Score=73.83 Aligned_cols=162 Identities=14% Similarity=0.056 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVY 149 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~ 149 (352)
+..-|.-+|...|+...|..-+++..+. .|+ ..+|..+...|.+.|..+.|.+-|++..+ +.| +..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 4556778899999999999999999985 444 66899999999999999999999999874 466 5677888888
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHH
Q 048142 150 ILGRAGRIAKAEELIKNM---PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m---~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 225 (352)
.+|..|++++|...|++. |.-|. ..+|.++.-+..+.|+.+.|...|++.++..|..+.+...+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999997 22222 56888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 048142 226 VKRIRELMAERNI 238 (352)
Q Consensus 226 a~~~~~~m~~~g~ 238 (352)
|...++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887766
No 54
>PF12854 PPR_1: PPR repeat
Probab=98.90 E-value=2.8e-09 Score=60.06 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=24.2
Q ss_pred CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 048142 100 GVKPDAITFVGVLVACSHAGLVDERISHFNLM 131 (352)
Q Consensus 100 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 131 (352)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67777777777777777777777777777765
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=6.5e-07 Score=79.11 Aligned_cols=244 Identities=14% Similarity=0.072 Sum_probs=176.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC
Q 048142 6 ACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ 85 (352)
Q Consensus 6 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~ 85 (352)
..++++.-.+.....|+.-+...-+....+.-...+++.|+.+|+++.+..+ -+. .|..+|+..+-.- +.+
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP-YRl------~dmdlySN~LYv~--~~~ 312 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP-YRL------DDMDLYSNVLYVK--NDK 312 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-Ccc------hhHHHHhHHHHHH--hhh
Confidence 4556666666666667654444333344444667788999999999888632 122 5677787776433 322
Q ss_pred hHHHHHHHHHHH--HcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 048142 86 GNKALEYFYEMQ--IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 86 ~~~A~~~~~~m~--~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
.. +..+.+-. -....| .|...+.+.|+-.++.++|...|++..+ +.| ....|+.+..-|....+...|.+
T Consensus 313 sk--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HH--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 22 22222211 122333 4666778888889999999999999874 566 56788889999999999999999
Q ss_pred HHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 163 LIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 163 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
-++.. .+.| |-..|-.|-.+|...+...=|+-.|++..+..|.|+..|.+|...|.+.++.++|.+.|......|-.-
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 99987 4444 789999999999999999999999999999999999999999999999999999999999988776541
Q ss_pred CCceeEEEEcceeehhhhcCcccCchhhhh
Q 048142 241 PPGCILIEVDGVVHEFVKAGFVPNKSEVLF 270 (352)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 270 (352)
. ..+..+.+.+-+.++..+|..++.
T Consensus 466 ~-----~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 466 G-----SALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred h-----HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1 111223344556666666666543
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=5.4e-07 Score=80.14 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=124.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 160 (352)
-.|+.-+|.+-|+..+...-.++. .|--+...|....+.++.+..|+...+ +.| ++.+|..-.+++.-.+++++|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHH
Confidence 467888888888888875433332 266677788899999999999998874 555 677888888888888999999
Q ss_pred HHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 161 EELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 161 ~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..=|++. .+.|. +..|--+.-+.-+.+.+++++..|++.++..|..+..|+.....+...+++++|.+.|+...+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999987 55564 666766767777888999999999999999999999999999999999999999999998764
No 57
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.86 E-value=1.2e-06 Score=86.04 Aligned_cols=189 Identities=12% Similarity=0.042 Sum_probs=147.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT 107 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 107 (352)
.|...|. ..+.|+++.|+..|.+..+.... -....+ .++..+...|+.++|+..+++.... .......
T Consensus 37 ~y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~---------~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~ 104 (822)
T PRK14574 37 QYDSLII-RARAGDTAPVLDYLQEESKAGPL---------QSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRG 104 (822)
T ss_pred HHHHHHH-HHhCCCHHHHHHHHHHHHhhCcc---------chhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHH
Confidence 3554443 47999999999999999886532 001233 8888899999999999999998721 1222333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHh
Q 048142 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMALDHFVLGGLLGACRI 185 (352)
Q Consensus 108 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~ 185 (352)
...+...+...|++++|.++|+++.+. .| ++..+..++..|...++.++|++.++++ +..|+...+..++..+..
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~ 181 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHh
Confidence 444466788889999999999999864 44 5677778889999999999999999998 566777777555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 186 HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
.++..+|++.++++.+..|.+...+..+..+..+.|-...|.++..
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 6677679999999999999999999999999999998888887665
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=3.1e-06 Score=68.45 Aligned_cols=197 Identities=11% Similarity=0.018 Sum_probs=163.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-A 105 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 105 (352)
.+..-|.-+|.+.|+...|..-+++.++... .+..+|..+...|-+.|..+.|.+-|++.... .|+ .
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP----------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~G 103 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP----------SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNG 103 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc----------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCcc
Confidence 3456677789999999999999999999764 45678999999999999999999999998874 444 5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHH
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGAC 183 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~ 183 (352)
...|.--.-+|..|++++|...|++........--..+|..+.-+-.+.|+.+.|...|++. ...|+ ..+.-.+....
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 56777777889999999999999999876333334567888888888999999999999986 34444 56777888889
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 184 RIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
...|++-.|...++......+++..+.-..|..-...|+.+.+-+.=..+.+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999887778888888888988999999988877666654
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=4e-06 Score=78.14 Aligned_cols=259 Identities=15% Similarity=0.091 Sum_probs=174.3
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVT-MVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
...|++++|++.++.-... .+|..+ .......+.+.|+.++|..++..+++.+. .|..-|..+..+.
T Consensus 15 ~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP----------dn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP----------DNYDYYRGLEEAL 82 (517)
T ss_pred HHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------CcHHHHHHHHHHH
Confidence 3679999999999775543 455544 45677788999999999999999999874 3444455555555
Q ss_pred Hhc-----CChHHHHHHHHHHHHcCCC---C--------C--------------------HhHHHHHHHHHhccCCHHHH
Q 048142 81 AMC-----GQGNKALEYFYEMQIRGVK---P--------D--------------------AITFVGVLVACSHAGLVDER 124 (352)
Q Consensus 81 ~~~-----g~~~~A~~~~~~m~~~g~~---p--------~--------------------~~t~~~ll~~~~~~g~~~~a 124 (352)
.-. .+.+...++|+++...--. | + +.+|+.|-..|....+.+-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 222 2456667777766543100 0 1 12334444444444444444
Q ss_pred HHHHHHhhHhc---C----------CCCCh--hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcC
Q 048142 125 ISHFNLMSEKY---G----------IRPSI--EHYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHD 187 (352)
Q Consensus 125 ~~~~~~m~~~~---g----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g 187 (352)
..++....... + -.|+. .++.-+.+.|-..|++++|++++++. ...|+ +..|..-...+-..|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 45555544321 1 12333 34456677888999999999999976 55676 677777888899999
Q ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCc-----eeEEEEcceeehhhhcCcc
Q 048142 188 NLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPG-----CILIEVDGVVHEFVKAGFV 262 (352)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~~~~~~~~~~~~~G~~ 262 (352)
++++|.+.++...+.++.|...=+.....+.++|++++|.+++....+.+..|... +.|..+ ....++.+.|..
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~-e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET-ECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH-HHHHHHHHHhhH
Confidence 99999999999999999898888888889999999999999999988777633210 011111 133445677877
Q ss_pred cCchhhhhcCC
Q 048142 263 PNKSEVLFDMD 273 (352)
Q Consensus 263 ~~~~~~~~~~~ 273 (352)
..|...+..+.
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 60
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=1.1e-06 Score=86.88 Aligned_cols=208 Identities=14% Similarity=0.110 Sum_probs=173.0
Q ss_pred CCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048142 23 TGD-KVTMVSLLLACTHLGALEVGMWLHPYIMKK-NIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG 100 (352)
Q Consensus 23 ~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 100 (352)
.|| ...|-.-|.-..+.+++++|+++.++.+.. ++.... --.-.|.++++.-...|.-+...++|++..+.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee------EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy- 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE------EKLNIWIAYLNLENAYGTEESLKKVFERACQY- 1526 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH------HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-
Confidence 454 677888898889999999999999998763 222211 22347888888888888889999999999875
Q ss_pred CCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---cHHH
Q 048142 101 VKPDA-ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL---DHFV 175 (352)
Q Consensus 101 ~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~ 175 (352)
+ |+ ..|..|...|.+.++.++|-++++.|.+++| -....|...++.+.+..+-++|..++++. ..-| .+..
T Consensus 1527 c--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1527 C--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred c--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 2 43 4588999999999999999999999999866 56777999999999999999999999886 2223 3444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 176 LGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
..-.+..-.+.|+.+++..+|+......|.-...|+..|++=.+.|+.+.+..+|++....++.|-
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 455566678999999999999999999998889999999999999999999999999999999864
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.82 E-value=1.6e-06 Score=75.40 Aligned_cols=227 Identities=12% Similarity=0.043 Sum_probs=165.1
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
..|+...|..-..++...+. -+.........+|.+.|++.....+...|.+.|.-.+..... -...+|+.++.-...
T Consensus 165 ~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~--le~~a~~glL~q~~~ 241 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR--LEQQAWEGLLQQARD 241 (400)
T ss_pred hCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH--HHHHHHHHHHHHHhc
Confidence 46788888888888887642 356778889999999999999999999999998764321111 123467777776666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
.+..+.-...+++.... .+-++..-.+++.-+...|+.++|.++..+..+. +..|....+ -...+-++.+.-.+
T Consensus 242 ~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~~----~~~l~~~d~~~l~k 315 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCRL----IPRLRPGDPEPLIK 315 (400)
T ss_pred cccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHHH----HhhcCCCCchHHHH
Confidence 66666656677666544 4555666678888899999999999999998886 767662221 12233444444333
Q ss_pred HHH----hCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 163 LIK----NMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 163 ~~~----~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
..+ ..|..| -.+.+|-..|.+++.+.+|...|+...+. .|+..+|+.+.++|.+.|+.++|.+++++-...-.
T Consensus 316 ~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 316 AAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL-RPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 333 335444 67788999999999999999999976654 45678999999999999999999999998764444
Q ss_pred CCC
Q 048142 239 KKP 241 (352)
Q Consensus 239 ~p~ 241 (352)
+|+
T Consensus 393 ~~~ 395 (400)
T COG3071 393 QPN 395 (400)
T ss_pred CCC
Confidence 443
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.3e-07 Score=80.61 Aligned_cols=221 Identities=14% Similarity=0.057 Sum_probs=148.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
..+++.+.+++++..... .++....+..-|.++...|+..+-..+=.+|++.-+ ...++|-++.--|..
T Consensus 256 ~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP----------~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP----------SKALSWFAVGCYYLM 324 (611)
T ss_pred HcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC----------CCCcchhhHHHHHHH
Confidence 356777777777777654 234444455555566666666665555555655432 233466666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHH----------------------------------hccCCHHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPD-AITFVGVLVAC----------------------------------SHAGLVDERISH 127 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~----------------------------------~~~g~~~~a~~~ 127 (352)
.|+..+|.+.|.+... +.|. ...|-....+| .+.++++.|.++
T Consensus 325 i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 6666666666665433 2222 12233333333 345566666666
Q ss_pred HHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048142 128 FNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM--------PMAL-DHFVLGGLLGACRIHDNLEAAERAAQ 197 (352)
Q Consensus 128 ~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 197 (352)
|.+.. ++.| |+.+.+-+.-..-..+.+.+|...|+.. +..+ -..+++.|-.+|.+.+..++|+..++
T Consensus 403 f~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 403 FKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 66554 5556 6667777666666678888888888765 1112 35678888899999999999999999
Q ss_pred HHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 198 QLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 198 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
+.+...|.+..+|.++.-.|...|+++.|...|.+-. .+.|+
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~ 521 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPD 521 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCc
Confidence 9999999999999999999999999999999998764 45666
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=4.5e-07 Score=82.17 Aligned_cols=220 Identities=12% Similarity=0.027 Sum_probs=176.3
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.++|++.+|.-.|+...+.. +-+...|--|-..-...++-..|+..+.+..+... .|....-+|.-.|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP----------~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP----------TNLEALMALAVSYT 364 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC----------ccHHHHHHHHHHHh
Confidence 46889999999999888763 23678888888888888888889998888887554 57778888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCC--------CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVK--------PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR 153 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 153 (352)
..|.-.+|+..|+.......+ ++..+-.. ..+.....+....++|-++....+..+|+.++..|.-.|--
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 999999999999998764211 01100000 23334445666777777777665666788888899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 154 AGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 154 ~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
.|.++.|.+.|+.. ..+|+ ...||-|-..++...+.++|+..|++.++..|.-+.+...|.-.|...|.+++|.+.|-
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999987 66775 88999999999999999999999999999999888888899999999999999998877
Q ss_pred HHH
Q 048142 232 LMA 234 (352)
Q Consensus 232 ~m~ 234 (352)
...
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 654
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=3.4e-06 Score=74.49 Aligned_cols=182 Identities=11% Similarity=0.062 Sum_probs=131.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 048142 40 GALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG 119 (352)
Q Consensus 40 g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 119 (352)
|++++|.+.+.+.....-. -....|| +.-.+-..|++++|++.|-++..- +.-+......+.+.|-...
T Consensus 504 gd~dka~~~ykeal~ndas---------c~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDAS---------CTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLE 572 (840)
T ss_pred CcHHHHHHHHHHHHcCchH---------HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhh
Confidence 4566666666666543322 2222333 233456788999999999887543 3336667777888888889
Q ss_pred CHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048142 120 LVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAA 196 (352)
Q Consensus 120 ~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~ 196 (352)
+..+|++++.+.. .+.| |+...+-|.+.|-+.|+-..|....-+- ..- -+..+..-|..-|....-+++++..|
T Consensus 573 d~aqaie~~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 573 DPAQAIELLMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred CHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999887765 4455 8899999999999999999998876543 222 24555555777788888899999999
Q ss_pred HHHHHhCCCCcchHHHHHHHH-hhcCChHHHHHHHHHHHhc
Q 048142 197 QQLLELLPDNGGSYVILSNRY-SSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 197 ~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~ 236 (352)
++.. ...|+.+-|..||..| -+.|++..|..+|+...+.
T Consensus 650 ekaa-liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 650 EKAA-LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHH-hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8863 5667888999888766 5689999999999988653
No 65
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=5.3e-07 Score=83.77 Aligned_cols=223 Identities=16% Similarity=0.088 Sum_probs=176.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 102 (352)
+|--..-..+...+.+.|-...|..+++.+ ..|...|.+|...|+..+|..+..+-.+ -+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl------------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~ 454 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL------------------EMWDPVILCYLLLGQHGKAEEINRQELE--KD 454 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH------------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CC
Confidence 333333345666778888888888888776 3688899999999999999999988877 58
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHH
Q 048142 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLL 180 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li 180 (352)
||+..|..+.+......-+++|+++++....+ .--.+.....+.++++++.+.|+.- .+.| -..+|-.+-
T Consensus 455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G 526 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLG 526 (777)
T ss_pred CcchhHHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhcc
Confidence 89999999999998888899999998876543 1111111222378899999999864 4444 367888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcC
Q 048142 181 GACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAG 260 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G 260 (352)
.+..+.+++..|.+.|..-..+.|.+...||++..+|.+.|+..+|...+.+..+.+..| |.+..+....-.+.|
T Consensus 527 ~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-----w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-----WQIWENYMLVSVDVG 601 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-----Ceeeechhhhhhhcc
Confidence 888899999999999999999999999999999999999999999999999998888665 555566666677889
Q ss_pred cccCchhhhhcCCHHHHh
Q 048142 261 FVPNKSEVLFDMDEEEKE 278 (352)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~ 278 (352)
..++|.+.+..+.+..+.
T Consensus 602 e~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 602 EFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred cHHHHHHHHHHHHHhhhh
Confidence 999999988877654444
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=2.7e-06 Score=72.04 Aligned_cols=186 Identities=11% Similarity=0.012 Sum_probs=91.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGD---KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVV 79 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~ 79 (352)
+.|..++|+++-..+..+---+. ....-.|..-|...|-++.|+.+|..+.+.|. --...--.|+..
T Consensus 81 sRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e----------fa~~AlqqLl~I 150 (389)
T COG2956 81 SRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE----------FAEGALQQLLNI 150 (389)
T ss_pred hcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh----------hhHHHHHHHHHH
Confidence 45666666666655554311111 12233344445556666666666666555332 112244555566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHc
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDA----ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRA 154 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~ 154 (352)
|-...+|++|++.-+++...|-.+.. .-|.-|...+....+++.|..++.+..+. .|+ +..--.+.+.+...
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA---DKKCVRASIILGRVELAK 227 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhc
Confidence 66666666666665555554443332 22444455555555555555555555432 232 22222334455555
Q ss_pred CCHHHHHHHHHhC-CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 155 GRIAKAEELIKNM-PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 155 g~~~~A~~~~~~m-~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
|+++.|.+.++.. .-.|+ ..+...|..+|...|+.+++...+.++.+
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666665555555 22233 33444555555555655555555555443
No 67
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.75 E-value=2.9e-06 Score=80.70 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CH
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP-DA 105 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 105 (352)
...-...+-....|++++|.+++.+.++... .+...|-+|...|-..|+.+++...+-..-. ..| |.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp----------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~ 207 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDP----------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDY 207 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc----------cchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCh
Confidence 3333344444445999999999999998765 5667999999999999999999887754443 344 56
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-c-H----HHHHH
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-D-H----FVLGG 178 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~-~----~~~~~ 178 (352)
.-|..+-....+.|.++.|.-.|.+..+. -+++...+---...|-+.|+...|++-|.++ ...| . . ..--.
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 77889999999999999999999999864 3345555555677899999999999999988 4344 2 1 22233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 048142 179 LLGACRIHDNLEAAERAAQQLLE--LLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPP 242 (352)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 242 (352)
++..+..+++-+.|.+.++.... ....+...++.++..|.+...++.|......+..+...||+
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 45667778888888888888665 44556678999999999999999999999998876555554
No 68
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=3.1e-07 Score=79.62 Aligned_cols=146 Identities=14% Similarity=0.030 Sum_probs=70.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH----HHHcC
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI----LGRAG 155 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~----~~~~g 155 (352)
+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ ...|... ..|..+ +.-.+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l-~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSIL-TQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHH-HHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHH-HHHHHHHHHHHhCch
Confidence 34455566665555431 2334444555555566666666666666543 2333221 122222 22223
Q ss_pred CHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCCh-HHHHHHHHH
Q 048142 156 RIAKAEELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW-KKVKRIREL 232 (352)
Q Consensus 156 ~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~ 232 (352)
.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.++.+..+..|.++.+...++......|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 455666666665 22345555555555566666666666665555555555555555555555555555 444555555
Q ss_pred HHh
Q 048142 233 MAE 235 (352)
Q Consensus 233 m~~ 235 (352)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 544
No 69
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.72 E-value=3.4e-06 Score=80.23 Aligned_cols=222 Identities=16% Similarity=0.118 Sum_probs=147.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVS----LLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVV 79 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~----li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~ 79 (352)
.|+...|++-|.++.....+.|..-+.. .+..+...++-+.|.+.++.....+-. . -+...+|.++..
T Consensus 254 ~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~--~------~~~ed~ni~ael 325 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD--E------ASLEDLNILAEL 325 (895)
T ss_pred hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc--c------ccccHHHHHHHH
Confidence 4555555555555555321111111111 233334444445555555554441111 0 333457778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHh----------------------HHH----HHHHHHhccCCHHHHHHHHHHhhH
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAI----------------------TFV----GVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------t~~----~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
|.+...++.|......+.....++|.. .|. -+.-++.+....+....+.....+
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH
Confidence 888888888888888777622222221 111 122344445555555555555555
Q ss_pred hcCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 048142 134 KYGIRP--SIEHYGCLVYILGRAGRIAKAEELIKNMPM---ALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGG 208 (352)
Q Consensus 134 ~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (352)
. .+.| +...|.-+..+|...|++.+|+++|..+-. .-+...|-.+..+|...|..++|.+.+++.+...|.+..
T Consensus 406 ~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 406 D-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred h-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 3 5333 577888899999999999999999999822 234778999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 209 SYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
.-.+|...+.+.|+.++|.+++..|.
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999876
No 70
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.68 E-value=1.7e-05 Score=73.24 Aligned_cols=237 Identities=12% Similarity=-0.004 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
.|--....+-.+|+...|..++.+..+.. +-+...|...+..-.....++.|..+|.+.. +..|+..+|.--+...
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLE 661 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHH
Confidence 34444444455555555555555555431 1133445555555555555555555555543 3344555554444444
Q ss_pred HHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHH
Q 048142 152 GRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRI 229 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 229 (352)
.-.+..++|.+++++. ..-|+ ...|..+-..+-+.++++.|...|..-.+.+|..+..|..|.+.=-+.|.+-.|..+
T Consensus 662 r~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 4455555555555544 22344 334444444555555555555555555555555555555555555555555556555
Q ss_pred HHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcC-CHHHHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEcc
Q 048142 230 RELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDM-DEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKN 308 (352)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 308 (352)
+++-+-++-+- . .++-..+..-.+.|....|..++... .++. .....-+.+--+.+.+...+ .-++.
T Consensus 742 ldrarlkNPk~--~---~lwle~Ir~ElR~gn~~~a~~lmakALQecp------~sg~LWaEaI~le~~~~rkT-ks~DA 809 (913)
T KOG0495|consen 742 LDRARLKNPKN--A---LLWLESIRMELRAGNKEQAELLMAKALQECP------SSGLLWAEAIWLEPRPQRKT-KSIDA 809 (913)
T ss_pred HHHHHhcCCCc--c---hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccchhHHHHHHhccCcccch-HHHHH
Confidence 55554444321 0 11112222334566665555543321 1111 11112222233334444444 67889
Q ss_pred cccccCccchhHHHhh
Q 048142 309 LRVCNDCHTATNIISK 324 (352)
Q Consensus 309 l~~~~~~~~a~~~~~~ 324 (352)
|++|..=+-.+--+.+
T Consensus 810 Lkkce~dphVllaia~ 825 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAK 825 (913)
T ss_pred HHhccCCchhHHHHHH
Confidence 9998765544444433
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=6.2e-06 Score=69.81 Aligned_cols=168 Identities=13% Similarity=0.029 Sum_probs=126.8
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H---hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh-h
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-A---ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI-E 142 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~ 142 (352)
.....+-.+...+.+.|++++|...|++.... .|+ . .++..+..++...|++++|...++++.+...-.|.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 45567888888999999999999999999874 333 2 466778889999999999999999998752222221 2
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCCcH-HHHH-----------------HHHHHHHhcCCHHHHHHH
Q 048142 143 HYGCLVYILGRA--------GRIAKAEELIKNM-PMALDH-FVLG-----------------GLLGACRIHDNLEAAERA 195 (352)
Q Consensus 143 ~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p~~-~~~~-----------------~li~~~~~~g~~~~a~~~ 195 (352)
++..+...+.+. |+.++|.+.|+++ ...|+. ..+. .+...+...|++++|...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 444555555554 7889999999987 223432 2221 344567888999999999
Q ss_pred HHHHHHhCCC---CcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 196 AQQLLELLPD---NGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 196 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
++...+..|. ....+..+..++.+.|++++|..+++.+..+.
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999886554 34688899999999999999999999887543
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=1.2e-05 Score=67.95 Aligned_cols=167 Identities=11% Similarity=-0.001 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALK-DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP 103 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 103 (352)
....+..+...+.+.|+++.|...++++.+.... . | ....+..+..+|.+.|++++|+..|+++.+. .|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--~------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--S------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HP 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--Cc
Confidence 4567778888899999999999999998875421 1 2 2246788889999999999999999999874 33
Q ss_pred CHh----HHHHHHHHHhcc--------CCHHHHHHHHHHhhHhcCCCCCh-hHH-----------------HHHHHHHHH
Q 048142 104 DAI----TFVGVLVACSHA--------GLVDERISHFNLMSEKYGIRPSI-EHY-----------------GCLVYILGR 153 (352)
Q Consensus 104 ~~~----t~~~ll~~~~~~--------g~~~~a~~~~~~m~~~~g~~p~~-~~~-----------------~~li~~~~~ 153 (352)
+.. ++..+..++... |+.++|...++.+.+. .|+. ..+ -.+...|.+
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 344444455443 7889999999999865 3332 111 134566788
Q ss_pred cCCHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 154 AGRIAKAEELIKNM----PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 154 ~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
.|++++|...+++. +..| ....+..+..++...|+.++|...++.+....|
T Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 179 RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999887 3233 357888999999999999999999988876543
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=3.1e-05 Score=69.85 Aligned_cols=87 Identities=13% Similarity=-0.049 Sum_probs=38.6
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC---CcH--HHHHHHHHHHHh
Q 048142 112 LVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMA---LDH--FVLGGLLGACRI 185 (352)
Q Consensus 112 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~---p~~--~~~~~li~~~~~ 185 (352)
...+...|++++|...+++..+. .+.+...+..+...|...|++++|...+++. +.. |+. ..|..+...+..
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 33444455555555555555432 1112334444444555555555555555443 111 111 123334444555
Q ss_pred cCCHHHHHHHHHHHH
Q 048142 186 HDNLEAAERAAQQLL 200 (352)
Q Consensus 186 ~g~~~~a~~~~~~~~ 200 (352)
.|+.++|..++++..
T Consensus 199 ~G~~~~A~~~~~~~~ 213 (355)
T cd05804 199 RGDYEAALAIYDTHI 213 (355)
T ss_pred CCCHHHHHHHHHHHh
Confidence 555555555555543
No 74
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.60 E-value=7.2e-08 Score=54.91 Aligned_cols=34 Identities=44% Similarity=0.612 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7899999999999999999999999999998873
No 75
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=3.6e-05 Score=67.81 Aligned_cols=201 Identities=12% Similarity=0.032 Sum_probs=121.3
Q ss_pred CCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLG-ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.++.++|+.+..+.... .| +..+|+.--..+...| ++++++..++++.+... .+..+|+.-.-.+.
T Consensus 50 ~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np----------knyqaW~~R~~~l~ 117 (320)
T PLN02789 50 DERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP----------KNYQIWHHRRWLAE 117 (320)
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC----------cchHHhHHHHHHHH
Confidence 45666677777666653 44 3445555555555566 56777777777776544 44556766555555
Q ss_pred hcCCh--HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc---CC
Q 048142 82 MCGQG--NKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA---GR 156 (352)
Q Consensus 82 ~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~ 156 (352)
+.|+. ++++++++++.+... -|..+|+...-++...|+++++++.++++.+. . .-+...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhcccccc
Confidence 55542 567777777776432 25667777777777777788888888877764 2 22455566555554443 22
Q ss_pred H----HHHHHHHHhC-CCCC-cHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh
Q 048142 157 I----AKAEELIKNM-PMAL-DHFVLGGLLGACRIH----DNLEAAERAAQQLLELLPDNGGSYVILSNRYSS 219 (352)
Q Consensus 157 ~----~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 219 (352)
. +++.++..++ ...| |...|+.+...+... +...+|...+.+..+..+.++.....|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 2 3455555333 3344 356666666666552 334556677766666566666667777777765
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=3.9e-05 Score=74.34 Aligned_cols=169 Identities=9% Similarity=0.017 Sum_probs=132.1
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA-ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYG 145 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~ 145 (352)
.++..+-.|.....+.|++++|..+++...+ +.||. .....+...+.+.+++++|...+++... ..| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 4577788888999999999999999999988 57774 5677889999999999999999999985 355 567778
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCCh
Q 048142 146 CLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 223 (352)
.+..++.+.|++++|.++|+++ .-.|+ ..++.++-.++...|+.++|...|++..+...+-..-|+.++. ++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 8888999999999999999998 23454 7889999999999999999999999998876666666665443 33
Q ss_pred HHHHHHHHHHHhcCCCCCCceeEE
Q 048142 224 KKVKRIRELMAERNIKKPPGCILI 247 (352)
Q Consensus 224 ~~a~~~~~~m~~~g~~p~~~~~~~ 247 (352)
..-..+++.+.-.+...+..+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~ 256 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSIL 256 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeee
Confidence 444556666654444333333333
No 77
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.50 E-value=0.00018 Score=66.80 Aligned_cols=218 Identities=8% Similarity=-0.060 Sum_probs=171.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
.|..++-..+|++.... ++-....|-......-..|++..|+.++.+..+... .+...|-+-+..-..+
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p----------nseeiwlaavKle~en 631 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP----------NSEEIWLAAVKLEFEN 631 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC----------CcHHHHHHHHHHhhcc
Confidence 35566666777777654 333455666667777788999999999998887654 4567899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 048142 84 GQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEEL 163 (352)
Q Consensus 84 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 163 (352)
..++.|..+|.+... ..|+...|.--++.---.++.++|.+++++..+. ++--...|-.+.+.+-+.++++.|.+-
T Consensus 632 ~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 632 DELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred ccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999988776 5677777776666666789999999999888864 333355677778888888999998887
Q ss_pred HHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 164 IKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 164 ~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
|..= ..-|+ +..|-.|...--+.|++-+|..++++.+-..|.+...|-..|.+=.+.|..++|..+..+..+.
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7653 33454 7788888888888889999999999988888999999999999999999999998887766543
No 78
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=5.6e-06 Score=77.22 Aligned_cols=202 Identities=13% Similarity=0.020 Sum_probs=161.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
.|-..+|+.+|++.. .|-.+|.+|...|+..+|..+..+..+. + ||...|..+.+.....
T Consensus 411 lGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~---------~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 411 LGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--D---------PDPRLYCLLGDVLHDP 470 (777)
T ss_pred cchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--C---------CcchhHHHhhhhccCh
Confidence 456667777776543 5777889999999999999998888773 2 7778899999888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 048142 84 GQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 84 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
--+++|.++++..... +-..+-.-..+.++++++.+.|+.-.+. .| ...+|-.+--+..+.++++.|.+
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~---nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI---NPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc---CccchhHHHhccHHHHHHhhhHHHHH
Confidence 8899999999876542 1111112223378999999999887653 34 56778888888889999999999
Q ss_pred HHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 163 LIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 163 ~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
.|... ...|| ...||++-.+|.+.++..+|...+++..+-...+...|...+-...+-|.+++|.+.+..|..
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99876 55676 789999999999999999999999999886666777888888888999999999999998864
No 79
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.48 E-value=2.4e-07 Score=52.38 Aligned_cols=33 Identities=42% Similarity=0.586 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP 103 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 103 (352)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=3e-05 Score=63.52 Aligned_cols=148 Identities=6% Similarity=-0.012 Sum_probs=111.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 77 IVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 4567888988886544432221 11 1222366677777777776653 24478889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-cHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 157 IAKAEELIKNM-PMAL-DHFVLGGLLGAC-RIHDN--LEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 157 ~~~A~~~~~~m-~~~p-~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
+++|...|++. ...| +...+..+..++ ...|+ .++|.+++++..+..|.+..++..+...+...|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999987 4455 467777777764 66676 5999999999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 048142 232 LMAERNI 238 (352)
Q Consensus 232 ~m~~~g~ 238 (352)
++.+..-
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9876544
No 81
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.45 E-value=4.6e-06 Score=80.01 Aligned_cols=221 Identities=13% Similarity=0.004 Sum_probs=117.4
Q ss_pred cCCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcH-HH
Q 048142 3 EDSACEEALLLFREVQHK---GLTGDK------VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDV-MT 72 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~---g~~p~~------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~-~~ 72 (352)
..|++++|...|.+.... ...+|. .+-..+....-..++.+.|.+.|..+.+.-. +- ..
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-----------~YId~ 532 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-----------GYIDA 532 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-----------hhHHH
Confidence 468888999988888764 223333 2233344455667788888888888877432 11 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHH
Q 048142 73 LTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILG 152 (352)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 152 (352)
|--+...--..++..+|..+++..... ...++..++.+-..+.+...+..|..-|....++....+|..+.-+|.+.|.
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 222221111235566677666666543 1222333333344455555555555545444443222344444444444333
Q ss_pred H------------cCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 048142 153 R------------AGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 153 ~------------~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 218 (352)
+ .+..++|+++|.+. ...| |...-|.+.-.++..|++.+|..+|..+.+.......+|..+.+.|.
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 2 13345566665554 2222 34444555555666666666666666666544445556666666666
Q ss_pred hcCChHHHHHHHHHHHh
Q 048142 219 SSRKWKKVKRIRELMAE 235 (352)
Q Consensus 219 ~~g~~~~a~~~~~~m~~ 235 (352)
..|++-.|+++|+.-..
T Consensus 692 e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665443
No 82
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.42 E-value=5.3e-05 Score=73.01 Aligned_cols=256 Identities=12% Similarity=0.042 Sum_probs=179.0
Q ss_pred CChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCCCccccccCCcHHHHHHHH
Q 048142 5 SACEEALLLFREV----QHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK---NIEVDVGLGMALKDVMTLTALI 77 (352)
Q Consensus 5 g~~~~A~~~~~~m----~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~~li 77 (352)
+++..++..|... ...+..+-....|.+.......|++.+|...|...... ...+|.. .+ +++.+--.+.
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~--~~-~~lt~~YNla 503 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG--KS-TNLTLKYNLA 503 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc--cc-chhHHHHHHH
Confidence 3444445555433 34555677888999999999999999999999998765 1222211 11 3332323355
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDAIT-FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
..+-..++.+.|.+.|...... .|..++ |--+...-...+...+|...+..... ....++..++-+...|.+...
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhh
Confidence 6666778999999999999874 455443 44443222335788899999988876 445566667777778888888
Q ss_pred HHHHHHHHHhC----CCCCcHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhc
Q 048142 157 IAKAEELIKNM----PMALDHFVLGGLLGACR------------IHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSS 220 (352)
Q Consensus 157 ~~~A~~~~~~m----~~~p~~~~~~~li~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 220 (352)
+..|.+-|+.. ...+|+.+.-+|-+.|. ..+..++|+++|.++++..|.|...-|-+.-.++..
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 88888855544 33356665555555442 334578899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcC
Q 048142 221 RKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDM 272 (352)
Q Consensus 221 g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 272 (352)
|++++|..+|.+.++....-.+ .| -++.|.+...|.+-.|++++...
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~d--v~---lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFED--VW---LNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCc--ee---eeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987763211 12 23567788888888888777543
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=2.1e-05 Score=66.86 Aligned_cols=158 Identities=11% Similarity=-0.018 Sum_probs=133.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHH-HHHHHHHH
Q 048142 74 TALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHY-GCLVYILG 152 (352)
Q Consensus 74 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-~~li~~~~ 152 (352)
+.|..+|.+.|.+.+|...|+.-... .|-..||..|-++|.+...++.|+.++.+-.+. -|..+|| .-+.+.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 77889999999999999999998875 667778999999999999999999999988753 4544444 44567788
Q ss_pred HcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 153 RAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
..++.++|.++++.. ...| ++.....+..+|.-.++++.|.+.++++++....++..|..+.-.|.-.+++|-++--|
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 889999999999987 3333 45566667778899999999999999999998889999999999999999999999888
Q ss_pred HHHHhc
Q 048142 231 ELMAER 236 (352)
Q Consensus 231 ~~m~~~ 236 (352)
++....
T Consensus 382 ~RAlst 387 (478)
T KOG1129|consen 382 QRALST 387 (478)
T ss_pred HHHHhh
Confidence 876643
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.40 E-value=8.2e-06 Score=70.86 Aligned_cols=153 Identities=20% Similarity=0.130 Sum_probs=112.5
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 048142 34 LACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLV 113 (352)
Q Consensus 34 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 113 (352)
..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~---------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~ 171 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG---------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAE 171 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT---------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc---------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHH
Confidence 4456778888888776532 34456677889999999999999999999874 3443 3444444
Q ss_pred HHh----ccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcC
Q 048142 114 ACS----HAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHD 187 (352)
Q Consensus 114 ~~~----~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 187 (352)
++. ..+.+.+|..+|+++.+ ...+++.+.|.+..++...|++++|.+++.+. ...| ++.+...++......|
T Consensus 172 awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 172 AWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 443 34579999999999876 45678899999999999999999999999886 3333 4667777887777778
Q ss_pred CH-HHHHHHHHHHHHhCCCC
Q 048142 188 NL-EAAERAAQQLLELLPDN 206 (352)
Q Consensus 188 ~~-~~a~~~~~~~~~~~~~~ 206 (352)
+. +.+.+.+.++....|..
T Consensus 250 k~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 250 KPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp -TCHHHHHHHHHCHHHTTTS
T ss_pred CChhHHHHHHHHHHHhCCCC
Confidence 77 77888999988876654
No 85
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.40 E-value=6.2e-07 Score=50.91 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=31.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 208 GSYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
.+|+++|++|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.38 E-value=0.00021 Score=64.43 Aligned_cols=198 Identities=12% Similarity=0.060 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDV-MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
...|..+...+...|+.+.+...+....+.... + .+. .........+...|++++|.+++++..+. .+.|
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~ 76 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-R-------ATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRD 76 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-C-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCc
Confidence 445666666677778888877777666554321 1 121 11222334556789999999999998875 2333
Q ss_pred HhHHHH---HHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHH
Q 048142 105 AITFVG---VLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGG 178 (352)
Q Consensus 105 ~~t~~~---ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 178 (352)
...+.. ........+..+.+.+.+... ....|+ ......+...+...|++++|...+++. ...|+ ...+..
T Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~ 153 (355)
T cd05804 77 LLALKLHLGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA 153 (355)
T ss_pred HHHHHHhHHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 434442 122222345556666555541 133443 344556667889999999999999987 44454 667788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCc----chHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 179 LLGACRIHDNLEAAERAAQQLLELLPDNG----GSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
+...+...|++++|...+++..+..|.+. ..|..+...+...|++++|..++++...
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88899999999999999999887655332 2355788899999999999999999854
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.38 E-value=0.00031 Score=65.72 Aligned_cols=228 Identities=15% Similarity=0.085 Sum_probs=154.6
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-cc-----CChHHHHHHHHHHHHcCCCCCccccccC--------
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACT-HL-----GALEVGMWLHPYIMKKNIEVDVGLGMAL-------- 67 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~l-------- 67 (352)
.+.|+.++|..+|+.+... .|+...|...+..+. -. .+.+...++++++...-...+..-.-+|
T Consensus 49 ~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F 126 (517)
T PF12569_consen 49 LKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEF 126 (517)
T ss_pred HHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHH
Confidence 4679999999999999986 477776665554443 22 2467778888887665432222111111
Q ss_pred -------------Cc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C----------CCCCHh--HHHHHHHHHhc
Q 048142 68 -------------KD-VMTLTALIVVLAMCGQGNKALEYFYEMQIR----G----------VKPDAI--TFVGVLVACSH 117 (352)
Q Consensus 68 -------------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g----------~~p~~~--t~~~ll~~~~~ 117 (352)
.. ..+|+.|-..|....+.+-..+++...... + -.|+.. ++.-+...|..
T Consensus 127 ~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 127 KERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 11 135666666666555555555666665432 1 134442 44566777889
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHH
Q 048142 118 AGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRAGRIAKAEELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAER 194 (352)
Q Consensus 118 ~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~ 194 (352)
.|++++|..++++..+ ..|+ +..|..-...|-..|++++|.+.++.. ... -|-..=+-....+.++|++++|.+
T Consensus 207 ~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred hCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999998875 3565 778888899999999999999999887 222 355555666678899999999999
Q ss_pred HHHHHHHhC-CCCc--------chHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 195 AAQQLLELL-PDNG--------GSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 195 ~~~~~~~~~-~~~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
++....+.. .+.. ....-...+|.+.|++..|++-|....
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 998876533 2211 122455678999999998887766554
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=4e-05 Score=63.32 Aligned_cols=94 Identities=16% Similarity=0.035 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhc
Q 048142 143 HYGCLVYILGRAGRIAKAEELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSS 220 (352)
Q Consensus 143 ~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 220 (352)
..+..+....+.|++.+|...|.+. +..+|...|+.+-.+|-+.|+.+.|..-|.+..+..+.++..++.|.-.|.-.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 3333444444445555555544444 22234444444444455555555555555554444444444444444444445
Q ss_pred CChHHHHHHHHHHHhc
Q 048142 221 RKWKKVKRIRELMAER 236 (352)
Q Consensus 221 g~~~~a~~~~~~m~~~ 236 (352)
|+++.|..++......
T Consensus 182 gd~~~A~~lll~a~l~ 197 (257)
T COG5010 182 GDLEDAETLLLPAYLS 197 (257)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 5555555444444433
No 89
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4e-05 Score=69.70 Aligned_cols=201 Identities=14% Similarity=0.045 Sum_probs=129.9
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048142 21 GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG 100 (352)
Q Consensus 21 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 100 (352)
|..-+......-.+-|-..+++.+..++.+.+.+... +....+-.-|.++...|+..+-+.+=.+|.+.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp----------fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~- 307 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP----------FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL- 307 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC----------CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-
Confidence 4455666777778888899999999999999887643 44456667788999999999888888888875
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHH--------------
Q 048142 101 VKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRAGRIAKAEELIK-------------- 165 (352)
Q Consensus 101 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~-------------- 165 (352)
.+-.+.+|-++.-.|-..|+.++|++.|.+.. .+.|. ...|-.....|+-.|..|.|+..+.
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L 384 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL 384 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH
Confidence 45568899999999999999999999998875 34442 3345555555555555555555443
Q ss_pred --------------------hC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHH
Q 048142 166 --------------------NM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELL-------PDNGGSYVILSNR 216 (352)
Q Consensus 166 --------------------~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~li~~ 216 (352)
+. .+.|+ +...+-+--.....+.+.+|...|+..+... +.-..+++.|..+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 33 23332 3333333333334455555555555543210 0112235556666
Q ss_pred HhhcCChHHHHHHHHHHHh
Q 048142 217 YSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 217 ~~~~g~~~~a~~~~~~m~~ 235 (352)
|.+.+++++|...+++...
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666665544
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=2.7e-05 Score=60.39 Aligned_cols=105 Identities=11% Similarity=-0.039 Sum_probs=71.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHH
Q 048142 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACR 184 (352)
Q Consensus 108 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 184 (352)
+..+...+...|++++|...|+.... ..| +...|..+..++.+.|++++|...|+.. ...| +...|..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 33455666677777777777777664 344 5666777777777777777777777776 3333 4666677777777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 048142 185 IHDNLEAAERAAQQLLELLPDNGGSYVILSN 215 (352)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 215 (352)
..|+.++|...|+...+..|.++..|...-.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 7777777777777777777777666654433
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=1.5e-05 Score=61.76 Aligned_cols=99 Identities=9% Similarity=-0.078 Sum_probs=87.2
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Q 048142 137 IRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214 (352)
Q Consensus 137 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 214 (352)
+.|+ .+..+...+...|++++|...|+.. ...| +...|..+...+...|++++|...|+...+..|.++..+..+.
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3454 3556778889999999999999987 4455 5888999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhcC
Q 048142 215 NRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 215 ~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
.++...|+.++|.+.|+...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987644
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=7.9e-05 Score=72.26 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=105.1
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHH
Q 048142 101 VKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLG 177 (352)
Q Consensus 101 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 177 (352)
...+...+..|.....+.|..++|..+++...+ +.|+ ......+...+.+.+++++|+..+++. ...|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 444677888888888888999999998888874 5674 566677788888889999998888887 44565 45556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 178 GLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
.+..++...|++++|..+|+++....|.+..++..+...+-..|+.++|...|++..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667788889999999999988887777788888888888888999998888887753
No 93
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.33 E-value=1e-06 Score=49.74 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=31.0
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 208 GSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=8.9e-05 Score=61.33 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=84.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA 154 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 154 (352)
.+-..+...|+-+.+..+....... ..-|............+.|++..|...+.+... .-++|...|+.+--+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 3444455555555555555543322 122333333455555666666666666666553 3344566666666666666
Q ss_pred CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 155 GRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 155 g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
|++++|..-|.+. .+.| ++...|+|.-.+.-.|+.+.|..++.......+.|..+-..|.-.....|++++|..+-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6666666655554 2222 244555566666666666666666666555555555555556666666666666665543
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=0.0001 Score=60.38 Aligned_cols=115 Identities=11% Similarity=-0.012 Sum_probs=87.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHH-
Q 048142 38 HLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP-DAITFVGVLVAC- 115 (352)
Q Consensus 38 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~- 115 (352)
..++.+++...+....+... .|...|..|...|...|++++|...|++..+. .| +...+..+..++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P----------~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~ 118 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANP----------QNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLY 118 (198)
T ss_pred CchhHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 36666777777777766554 57778888888888889999999998888874 34 455666666653
Q ss_pred hccCC--HHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 116 SHAGL--VDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 116 ~~~g~--~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
...|+ .++|..++++..+. .| +...+..+...+.+.|++++|...|+++
T Consensus 119 ~~~g~~~~~~A~~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 119 YQAGQHMTPQTREMIDKALAL---DANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HhcCCCCcHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56666 48888888888753 44 6677888888888889999999988887
No 96
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.28 E-value=4.9e-05 Score=72.59 Aligned_cols=208 Identities=16% Similarity=0.087 Sum_probs=129.6
Q ss_pred CccCCChhHHHHHHHHHHHCC------------------------CCCCHHHHHHHHHHHhccCChHH---HHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKG------------------------LTGDKVTMVSLLLACTHLGALEV---GMWLHPYIM 53 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g------------------------~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~ 53 (352)
||..|+.+.|- +|..|+-.. -.|-..||..|+.+|...|++.. .++.+..+.
T Consensus 35 Yc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~ 113 (1088)
T KOG4318|consen 35 YCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLILFEVVEQDLESIN 113 (1088)
T ss_pred HcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 67778888777 777664321 25677899999999999998755 333222222
Q ss_pred H----cCCCC-Ccccc-------ccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhccCC
Q 048142 54 K----KNIEV-DVGLG-------MALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG-VKPDAITFVGVLVACSHAGL 120 (352)
Q Consensus 54 ~----~g~~~-~~~~~-------~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~ 120 (352)
. .|+.. ...+. ..+||.. +.|....-.|-++.+++++..+.... ..|-.+ .++-+.....
T Consensus 114 ~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt 186 (1088)
T KOG4318|consen 114 QSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT 186 (1088)
T ss_pred hhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc
Confidence 1 22211 00000 0003332 23444445566667776666554321 112211 2444443322
Q ss_pred HHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048142 121 VDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM---PMALDHFVLGGLLGACRIHDNLEAAERAAQ 197 (352)
Q Consensus 121 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 197 (352)
...++....+.-.+ .|++.+|.+++.+-..+|+++-|..++.+| |+..+..-|-.|+-+ .++...++.+.+
T Consensus 187 --pvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlr 260 (1088)
T KOG4318|consen 187 --PVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLR 260 (1088)
T ss_pred --hHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHH
Confidence 23333333333223 799999999999999999999999999999 666666656666655 788888888888
Q ss_pred HHHH-hCCCCcchHHHHHHHHhhcCC
Q 048142 198 QLLE-LLPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 198 ~~~~-~~~~~~~~~~~li~~~~~~g~ 222 (352)
.|.+ +..|+..|+...+..+.+.|.
T Consensus 261 gmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 261 GMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8876 678899999988887777555
No 97
>PLN02789 farnesyltranstransferase
Probab=98.27 E-value=0.00074 Score=59.54 Aligned_cols=195 Identities=7% Similarity=0.009 Sum_probs=141.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHh
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG-QGNKALEYFYEMQIRGVKPDAI 106 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ 106 (352)
++..+-..+...+..++|+.+.+++++... .+..+|+.--..+...| +++++++.++++.+...+ +..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP----------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyq 107 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNP----------GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQ 107 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCc----------hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chH
Confidence 344455556677889999999999988653 34456777767777777 689999999999886333 455
Q ss_pred HHHHHHHHHhccCC--HHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHH
Q 048142 107 TFVGVLVACSHAGL--VDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMA-LDHFVLGGLLG 181 (352)
Q Consensus 107 t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~ 181 (352)
+|+..-..+.+.|+ .+++..+++.+.+. .| +..+|+...-++.+.|++++|++.++++ ... .+...|+....
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~ 184 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYF 184 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHH
Confidence 67655444555665 36778888888753 45 7788888888899999999999999998 322 35677776665
Q ss_pred HHHhc---CC----HHHHHHHHHHHHHhCCCCcchHHHHHHHHhhc----CChHHHHHHHHHHHhc
Q 048142 182 ACRIH---DN----LEAAERAAQQLLELLPDNGGSYVILSNRYSSS----RKWKKVKRIRELMAER 236 (352)
Q Consensus 182 ~~~~~---g~----~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~ 236 (352)
.+... |. .+++.....+.....|.|...|+.+...+... ++..+|.+.+.+..+.
T Consensus 185 vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 185 VITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 55443 22 24677777788888999999999999988773 3446687777776553
No 98
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.25 E-value=1.1e-06 Score=48.34 Aligned_cols=30 Identities=43% Similarity=0.516 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGV 101 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 101 (352)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887764
No 99
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=0.0004 Score=62.18 Aligned_cols=220 Identities=10% Similarity=0.016 Sum_probs=138.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
.+++..|..+|++..... ..+...|..-+..=.+...+..|+.+++..+..-.. -...|--.+..=-..
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR----------VdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR----------VDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHh
Confidence 356778888888887644 345666666676667777788888888877764322 112444444444556
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 048142 84 GQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEEL 163 (352)
Q Consensus 84 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 163 (352)
|++..|.++|++-.+ ..|+...|.+.|+.=.+-+.++.|..+++...- +.|++.+|--....=.++|.+.-|..+
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 777777777777665 577777777777777777777777777777763 457777776666666667776666666
Q ss_pred HHhC----C-------------------------------------CCCcHHHHHHHHHHHHhcCCHHHHHHH-------
Q 048142 164 IKNM----P-------------------------------------MALDHFVLGGLLGACRIHDNLEAAERA------- 195 (352)
Q Consensus 164 ~~~m----~-------------------------------------~~p~~~~~~~li~~~~~~g~~~~a~~~------- 195 (352)
|+.. + .......|..+..---+.|+....+..
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 6544 1 111122233333222333433222211
Q ss_pred -HHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 196 -AQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 196 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
++.+.+..|.|-.+|--.++.-...|+.+...++|++... +++|
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp 354 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPP 354 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCc
Confidence 1222233566667787888888888999999999998875 3444
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=7.7e-05 Score=67.15 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=68.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 048142 31 SLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVG 110 (352)
Q Consensus 31 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 110 (352)
+|+..+...++++.|..+++++.+.. |+ ....|+..+...++..+|++++++.... .+-|......
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~-----------pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~ 239 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD-----------PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNL 239 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC-----------Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 34444455566666666666666543 22 2233555555566666666666666543 2223444444
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 048142 111 VLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNMPMA 170 (352)
Q Consensus 111 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 170 (352)
-...|.+.++.+.|..+.+++.+ ..| +..+|..|..+|.+.|++++|+..++.+|+.
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 44555566666666666666653 344 3346666666666666666666666666433
No 101
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.00089 Score=59.06 Aligned_cols=122 Identities=10% Similarity=0.048 Sum_probs=79.0
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHH----------------------------
Q 048142 112 LVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEE---------------------------- 162 (352)
Q Consensus 112 l~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~---------------------------- 162 (352)
-..+...|++++|.-.|+... .+.| +...|.-|+..|...|++.||.-
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred cHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc
Confidence 334445566666666665554 3343 55566666666666666655543
Q ss_pred --------HHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHH
Q 048142 163 --------LIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 163 --------~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (352)
++++- ..+|+ ....+.+...+...|..+.++.++++.+...+ |...++.|.+.+.....+.+|+..|..
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33332 35566 44556666777888888888888888766544 556888888888888888888888887
Q ss_pred HHhcC
Q 048142 233 MAERN 237 (352)
Q Consensus 233 m~~~g 237 (352)
....+
T Consensus 497 ALr~d 501 (564)
T KOG1174|consen 497 ALRQD 501 (564)
T ss_pred HHhcC
Confidence 65543
No 102
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=5.4e-05 Score=68.13 Aligned_cols=122 Identities=16% Similarity=0.090 Sum_probs=100.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHh
Q 048142 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRI 185 (352)
Q Consensus 108 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 185 (352)
..+|+..+...++++.|..+++++.+. .|+. ...++..+...++-.+|.+++++. ...| |......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345677777789999999999999875 3554 446788888888888999998887 2233 56666666677889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 186 HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
.++.+.|..+.+++.+..|.+-.+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988775
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00077 Score=60.66 Aligned_cols=160 Identities=17% Similarity=0.079 Sum_probs=121.6
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGC 146 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~ 146 (352)
|+...+...+.+......-..+..++.+-.+. .-...-|..-+ .+...|..++|+..++.+... .| |+.....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~ 345 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA---QPDNPYYLEL 345 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh---CCCCHHHHHH
Confidence 66666777776655444333333333322221 11233344444 445689999999999998763 55 6677777
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChH
Q 048142 147 LVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWK 224 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 224 (352)
..+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|++.+|+++++......|.|+..|..|..+|...|+..
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 788999999999999999998 55676 6777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 048142 225 KVKRIRELM 233 (352)
Q Consensus 225 ~a~~~~~~m 233 (352)
++.....++
T Consensus 426 ~a~~A~AE~ 434 (484)
T COG4783 426 EALLARAEG 434 (484)
T ss_pred HHHHHHHHH
Confidence 998877765
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00024 Score=59.87 Aligned_cols=206 Identities=14% Similarity=0.084 Sum_probs=150.4
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048142 20 KGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 20 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 99 (352)
.|+....--+.+++..+.+-.++..|++++..-.+... ++....+.|..+|-...++..|-+.++++..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p----------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q- 72 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP----------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQ- 72 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 34444444567777777888999999998887766553 4677888899999999999999999999987
Q ss_pred CCCCCHhHHHH-HHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH--HHHcCCHHHHHHHHHhCCCCCcHHHH
Q 048142 100 GVKPDAITFVG-VLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI--LGRAGRIAKAEELIKNMPMALDHFVL 176 (352)
Q Consensus 100 g~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~p~~~~~ 176 (352)
..|...-|.. -...+-+++.+.+|.++...|... |....-..-+.+ .-..+++..+..++++.+.+.+..+.
T Consensus 73 -l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~ 147 (459)
T KOG4340|consen 73 -LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQ 147 (459)
T ss_pred -hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchh
Confidence 4666655542 345667788999999999888642 332221111222 23468888899999999755566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 048142 177 GGLLGACRIHDNLEAAERAAQQLLEL-LPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPP 242 (352)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 242 (352)
+.......+.|+.+.|.+-|+...+. .-.....|+..+..| +.|++..|.+...++.++|++-.|
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 66666667899999999999998773 222335677666555 789999999999999999998544
No 105
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.0012 Score=59.23 Aligned_cols=165 Identities=12% Similarity=0.134 Sum_probs=106.8
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh--H---HHHH-HHH----HhccCCHHHHHHHHHHhhHhcCC
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI--T---FVGV-LVA----CSHAGLVDERISHFNLMSEKYGI 137 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t---~~~l-l~~----~~~~g~~~~a~~~~~~m~~~~g~ 137 (352)
-|-.+|--.+..-...|+.+...++|++.... ++|-.. . |.-| |+. =....+.+.+.++|+...+ +
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---l 395 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---L 395 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---h
Confidence 35556666666666777888888888777764 555221 0 1111 111 1235667777777776664 3
Q ss_pred CC-ChhHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHH
Q 048142 138 RP-SIEHYGCLVYILG----RAGRIAKAEELIKNM-PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYV 211 (352)
Q Consensus 138 ~p-~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (352)
.| ...|+.-+=-+|+ ++.++..|.+++... |.-|-..+|...|..-.+.+++|....++++.++..|.|..+|.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 33 4555554443443 567777788777665 77777888888887777788888888888888777777777777
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 212 ILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 212 ~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
.....=...|+.+.|..+|+-..+.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 6666666667777777777665544
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.00011 Score=67.07 Aligned_cols=215 Identities=11% Similarity=0.100 Sum_probs=159.4
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHH
Q 048142 36 CTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVA 114 (352)
Q Consensus 36 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 114 (352)
+.+.|++.+|.-.|+..++... -+...|--|......+++-..|+..+++-.+ +.|+ ......|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP----------~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP----------QHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVS 362 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh----------HHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 3678889999999999988765 5778999999999999999999999999887 5565 5567788888
Q ss_pred HhccCCHHHHHHHHHHhhHhcCC------C--CChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCcHHHHHHHHHH
Q 048142 115 CSHAGLVDERISHFNLMSEKYGI------R--PSIEHYGCLVYILGRAGRIAKAEELIKNM----PMALDHFVLGGLLGA 182 (352)
Q Consensus 115 ~~~~g~~~~a~~~~~~m~~~~g~------~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~ 182 (352)
|...|.-.+|...++.-.+. .. . ++...-+. ..+.....+.+..++|-++ +..+|+.+...|--.
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~-~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRN-KPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHh-CccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 99999999999988887653 21 0 01000000 1111122234445555544 545677777778778
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcc
Q 048142 183 CRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFV 262 (352)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~ 262 (352)
|-..|++++|...|+..+...|.|...||.|...++...+.++|...|.+..+ ++|. |...-..+--.+...|.+
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~---yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPG---YVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCC---eeeeehhhhhhhhhhhhH
Confidence 88899999999999999999999999999999999999999999999998865 4554 222222344446688888
Q ss_pred cCchhhhh
Q 048142 263 PNKSEVLF 270 (352)
Q Consensus 263 ~~~~~~~~ 270 (352)
.+|...|-
T Consensus 515 kEA~~hlL 522 (579)
T KOG1125|consen 515 KEAVKHLL 522 (579)
T ss_pred HHHHHHHH
Confidence 88877654
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.13 E-value=0.001 Score=66.78 Aligned_cols=213 Identities=10% Similarity=0.012 Sum_probs=161.7
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGD-----KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALI 77 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li 77 (352)
+.++.++|.+++++.... +.+. .-.|.++++.-..-|.-+...++|+++.+.- .....|..|.
T Consensus 1470 elsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-----------d~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-----------DAYTVHLKLL 1537 (1710)
T ss_pred hhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-----------chHHHHHHHH
Confidence 457789999999998764 3332 3457777777666778888899999998853 1234789999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC---hhHHHHHHHHHHHc
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS---IEHYGCLVYILGRA 154 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~ 154 (352)
..|.+.+..++|.++|++|.+. +.-....|...+..+.+..+-+.|..++.+..+. -|. .....-.++.--+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999876 5556778999999999999999999999998753 454 33344445556689
Q ss_pred CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCC-C-cchHHHHHHHHhhcCChHHHHHH
Q 048142 155 GRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLEL-LPD-N-GGSYVILSNRYSSSRKWKKVKRI 229 (352)
Q Consensus 155 g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~-~-~~~~~~li~~~~~~g~~~~a~~~ 229 (352)
|+.+.+..+|+.. ...| -...|+..|..-.++|+.+.+..+|++.... .++ . -..|...+..=-+.|+-+.+..+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 9999999999987 2122 4678999999999999999999999998774 222 2 24566666666666766655554
Q ss_pred HH
Q 048142 230 RE 231 (352)
Q Consensus 230 ~~ 231 (352)
-.
T Consensus 1694 Ka 1695 (1710)
T KOG1070|consen 1694 KA 1695 (1710)
T ss_pred HH
Confidence 33
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00034 Score=62.90 Aligned_cols=116 Identities=17% Similarity=0.039 Sum_probs=82.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHcCCH
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAI-TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRAGRI 157 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~ 157 (352)
+...|++++|+..++.+... .||.. -.......+.+.++.++|.+.++.+.. ..|+ ....-.+.++|.+.|+.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 34577888888888887764 44444 444566777788888888888888774 3554 55566677788888888
Q ss_pred HHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048142 158 AKAEELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLL 200 (352)
Q Consensus 158 ~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (352)
.+|..+++.. ...-|+..|..|..+|...|+..++.....+..
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888776 223357788888888888888877777766653
No 109
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00046 Score=63.35 Aligned_cols=210 Identities=12% Similarity=0.053 Sum_probs=131.3
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHH--HHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTAL--IVV 79 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~l--i~~ 79 (352)
..+|++++|+.....+...+ +-|...+..=+-+..+.+.+++|+.+.+. .+.. .+++.. =.+
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~------------~~~~~~~fEKA 86 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGAL------------LVINSFFFEKA 86 (652)
T ss_pred ccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchh------------hhcchhhHHHH
Confidence 35688888988888888765 33455666666677888888888754432 2211 122222 344
Q ss_pred H--HhcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcC
Q 048142 80 L--AMCGQGNKALEYFYEMQIRGVKPDAI-TFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAG 155 (352)
Q Consensus 80 ~--~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g 155 (352)
| .+.++.++|+..++ |..++.. +...-...|-+.|++++|..+|+.+.+. +.+- +...-..++.+ +
T Consensus 87 Yc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~----~ 156 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAV----A 156 (652)
T ss_pred HHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHH----H
Confidence 4 46888999988887 4444443 5555567778889999999999998764 3221 22222222211 1
Q ss_pred CHHHHHHHHHhCCCCCcHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHh-----CCCCc----------chHHHHHHHH
Q 048142 156 RIAKAEELIKNMPMALDHFVLGGLLG---ACRIHDNLEAAERAAQQLLEL-----LPDNG----------GSYVILSNRY 217 (352)
Q Consensus 156 ~~~~A~~~~~~m~~~p~~~~~~~li~---~~~~~g~~~~a~~~~~~~~~~-----~~~~~----------~~~~~li~~~ 217 (352)
.--.+. +.+..+..| ..+|..+.+ .+...|++..|+++++...+. ...|. ..-..|.-.+
T Consensus 157 a~l~~~-~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 157 AALQVQ-LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred HhhhHH-HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 111122 455556555 335554443 456789999999999987321 11111 2334556678
Q ss_pred hhcCChHHHHHHHHHHHhcCCC
Q 048142 218 SSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 218 ~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
...|+.++|.+++......+..
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCC
Confidence 8899999999999999887763
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=8.6e-05 Score=56.81 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=43.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhc
Q 048142 109 VGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIH 186 (352)
Q Consensus 109 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~ 186 (352)
..+...+...|++++|...++..... .+.+...+..+...|.+.|++++|...++.. ...| +...|..+...+...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 33444444455555555555554432 1223444444445555555555555554443 2222 234444444444555
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 048142 187 DNLEAAERAAQQLLELLPD 205 (352)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~ 205 (352)
|+.++|...++...+..|.
T Consensus 99 g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 99 GEPESALKALDLAIEICGE 117 (135)
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 5555555555554444443
No 111
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.10 E-value=4.4e-06 Score=45.91 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=25.4
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 208 GSYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788888888888888888888888887774
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=0.00035 Score=53.36 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
......+...+...|++++|.+.+..+...+. .+...|..+...|.+.|++++|...|++....+ +.+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 85 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP----------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDP 85 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCh
Confidence 34455566666777777777777777766542 345567777777777777777777777766542 3345
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
.++..+...+...|++++|...|+...+
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666677777777777777776664
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0013 Score=54.81 Aligned_cols=149 Identities=11% Similarity=-0.016 Sum_probs=99.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH---
Q 048142 77 IVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR--- 153 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~--- 153 (352)
...|+..+++++|++...... +......=...+.+..+++-|...++.|.+- . +..|.+-|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---d-ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---D-EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c-hHHHHHHHHHHHHHHhc
Confidence 355777888888888776621 2222233344456677788888888888752 2 34445545555443
Q ss_pred -cCCHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHH-HHHH
Q 048142 154 -AGRIAKAEELIKNM--PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK-VKRI 229 (352)
Q Consensus 154 -~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~ 229 (352)
.+.+.+|.-+|++| +..|+..+-+.+..++...|++++|+.++++.+...+.++.+...+|-.-...|.-.+ ..+.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 45678888888888 3567788888888888888888888888888888777777777777666666665543 3455
Q ss_pred HHHHHh
Q 048142 230 RELMAE 235 (352)
Q Consensus 230 ~~~m~~ 235 (352)
...++.
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 555554
No 114
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00051 Score=60.50 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=63.3
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHH-HHH-hhcCChH
Q 048142 149 YILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS-NRY-SSSRKWK 224 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~ 224 (352)
.++...|++++|.--|+.. ...| +..+|..|+.+|...|...+|.-..+...+..+.+..+.+.+. ..+ ....--+
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHH
Confidence 4455566666666666655 2333 3566666666666666666666666665555555555554442 222 1222334
Q ss_pred HHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhc
Q 048142 225 KVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFD 271 (352)
Q Consensus 225 ~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 271 (352)
+|.+++++- ++.+|. |.-.+..+.+.....|...|++.+++.
T Consensus 422 KAKkf~ek~----L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 422 KAKKFAEKS----LKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHhh----hccCCc-cHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 555555432 222221 222223344455578888888888753
No 115
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.04 E-value=0.00012 Score=52.63 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhccC--------CHHHHHHHHHHhhHhcCCCCChh
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGV-KPDAITFVGVLVACSHAG--------LVDERISHFNLMSEKYGIRPSIE 142 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~g~~p~~~ 142 (352)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++...+.+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 345567667777999999999999999999 999999999999988643 355678899999987 8999999
Q ss_pred HHHHHHHHHHH
Q 048142 143 HYGCLVYILGR 153 (352)
Q Consensus 143 ~~~~li~~~~~ 153 (352)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00069 Score=52.58 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=38.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDA--ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
..+...|++++|...|+........|+. .....|...+...|++++|...++.... -......+....+.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCC
Confidence 4444555555555555555554311111 1222334444455555555555544221 1223333444445555555
Q ss_pred CHHHHHHHHH
Q 048142 156 RIAKAEELIK 165 (352)
Q Consensus 156 ~~~~A~~~~~ 165 (352)
+.++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555555544
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0011 Score=55.23 Aligned_cols=194 Identities=15% Similarity=0.086 Sum_probs=120.1
Q ss_pred CcHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKAL-EYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGC 146 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 146 (352)
|.....-.+-.....-++-++-+ ++.+.+.......+...-..-...|++.|++++|++..+... +......
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al 142 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAAL 142 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHH
Confidence 44444444444444444444333 344455554444444444444567888899999988776522 2333333
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCC
Q 048142 147 LVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACR----IHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 222 (352)
=+..+.+..+++-|...+++|..--+..|.+-|..++. ..+.+.+|.-+|++|.+..+|++.+.+-...++...|+
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 34556677888889999988853345666666666554 34558888889999988888888888888888888999
Q ss_pred hHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcc-cCchhhhhcCC
Q 048142 223 WKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFV-PNKSEVLFDMD 273 (352)
Q Consensus 223 ~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~~~~~ 273 (352)
+++|..++++...+.-.- ...+++-++... ..|.. +-....+..+.
T Consensus 223 ~eeAe~lL~eaL~kd~~d----petL~Nliv~a~-~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKD----PETLANLIVLAL-HLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHHhccCCC----HHHHHHHHHHHH-HhCCChHHHHHHHHHHH
Confidence 999999988887654431 123444444444 34444 33344554444
No 118
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.02 E-value=0.00089 Score=51.96 Aligned_cols=125 Identities=16% Similarity=0.094 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--hhHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD---AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS--IEHYG 145 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~ 145 (352)
..|..++..+. .++...+.+.++.+.... +.+ ....-.+...+...|++++|...|+..... ...|+ ....-
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 35666666663 778888888888887752 222 122333556677788888888888888875 32222 22344
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 146 CLVYILGRAGRIAKAEELIKNMPMA-LDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
.|...+...|++++|+..++..+.. .....+...-..+...|+.++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4667777888888888888776322 2344555556677888888888887765
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0008 Score=55.55 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=119.8
Q ss_pred cCChHHHHHHHHHHHH---cC-CCCCHhH-HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCH
Q 048142 83 CGQGNKALEYFYEMQI---RG-VKPDAIT-FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 157 (352)
..+.++..+++.++.. .| ..|+..+ |-.++-+....|+.+.|...++.+..++ +-+..+-..-...+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4678889999888864 34 6677655 5567777788899999999999998763 22332222222235568999
Q ss_pred HHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 158 AKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 158 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
++|+++++.+ ...| |.+++.--+...-..|+.-+|++-+....+.++.|...|.-+...|...|+++.|.-.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998 3334 5788888888888888888999999999999999999999999999999999999999999874
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.00 E-value=0.001 Score=65.66 Aligned_cols=181 Identities=11% Similarity=-0.010 Sum_probs=113.5
Q ss_pred CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048142 22 LTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG 100 (352)
Q Consensus 22 ~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 100 (352)
..| +...+..|++.+...+++++|.++.+...+... +. +. .|-.+...+.+.++.++|..+ .+...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P--~~------i~--~yy~~G~l~~q~~~~~~~~lv--~~l~~- 92 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK--KS------IS--ALYISGILSLSRRPLNDSNLL--NLIDS- 92 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--cc------ee--hHHHHHHHHHhhcchhhhhhh--hhhhh-
Confidence 444 566778888888888888888888886665432 21 22 222222255555555555544 22221
Q ss_pred CCCCH-------------------hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 101 VKPDA-------------------ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 101 ~~p~~-------------------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
+..+. ..+..+..+|-+.|+.++|..+++++.+- . .-|+.+.|.+...|+.. ++++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 12222 45556666777777777777777777753 2 22566677777777766 777776
Q ss_pred HHHHhC---------------------CCCCc---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048142 162 ELIKNM---------------------PMALD---------------------HFVLGGLLGACRIHDNLEAAERAAQQL 199 (352)
Q Consensus 162 ~~~~~m---------------------~~~p~---------------------~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (352)
.++.+. ...|+ +.++-.+-..|....+++++..+++.+
T Consensus 170 ~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 170 TYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 665443 11222 223344446677788899999999999
Q ss_pred HHhCCCCcchHHHHHHHHh
Q 048142 200 LELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 200 ~~~~~~~~~~~~~li~~~~ 218 (352)
++..|.|.....-++..|.
T Consensus 250 L~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 250 LEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhcCCcchhhHHHHHHHHH
Confidence 9988888888887877775
No 121
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.99 E-value=0.00018 Score=65.19 Aligned_cols=134 Identities=13% Similarity=0.028 Sum_probs=105.2
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHH
Q 048142 13 LFREVQH---KGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKA 89 (352)
Q Consensus 13 ~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A 89 (352)
++..|.+ .+.+.+......+++.+....+++.+..++-......-..+. +|. |..++|+.|.+.|..+++
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~-----~~~--t~ha~vR~~l~~~~~~~~ 122 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYL-----LPS--THHALVRQCLELGAEDEL 122 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccc-----cCc--cHHHHHHHHHhcCCHHHH
Confidence 4444433 344557778888999999899999999988887764221111 022 345999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc
Q 048142 90 LEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA 154 (352)
Q Consensus 90 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 154 (352)
+++++.=...|+-||..||+.||+.+.+.|++..|.++...|... +...+..|+..-+.++.+.
T Consensus 123 l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 123 LELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998886 7667777776666665555
No 122
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.97 E-value=0.00032 Score=56.75 Aligned_cols=88 Identities=23% Similarity=0.189 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC------------
Q 048142 22 LTGDKVTMVSLLLACTHL-----GALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG------------ 84 (352)
Q Consensus 22 ~~p~~~t~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g------------ 84 (352)
-..|..+|..++..+.+. |.++-....+..|.+.|++ .|..+|+.|++.+=+..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~---------kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE---------KDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc---------ccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 356899999999999654 6788888889999999999 88899999999886522
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 048142 85 ----QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHA 118 (352)
Q Consensus 85 ----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 118 (352)
+-+-|++++++|...|+-||..|+..|++.+++.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 2233444444444444444444444444444433
No 123
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.97 E-value=0.0009 Score=63.34 Aligned_cols=233 Identities=16% Similarity=0.059 Sum_probs=157.1
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCCc-----cccccC----CcH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK-KNIEVDV-----GLGMAL----KDV 70 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~-----~~~~~l----~~~ 70 (352)
|+..++.+.|++..++....+-.-+...|..|.-.+...+++.+|+.+.+.... .|..... .+...+ .-+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHH
Confidence 345678899999999998876566888999888888999999999998887654 2321100 000000 111
Q ss_pred HHHHHHHHHHHh-----------------------cCChHHHHHHHHHHH--------HcC---------CC--CCH---
Q 048142 71 MTLTALIVVLAM-----------------------CGQGNKALEYFYEMQ--------IRG---------VK--PDA--- 105 (352)
Q Consensus 71 ~~~~~li~~~~~-----------------------~g~~~~A~~~~~~m~--------~~g---------~~--p~~--- 105 (352)
.|...++...-. ..+..+|.+...++. ..| +. |+.
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 122222222110 011112222111110 001 11 121
Q ss_pred ---hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHH
Q 048142 106 ---ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLL 180 (352)
Q Consensus 106 ---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li 180 (352)
..|......+.+.+..++|...+.+..+. .......|......+...|.+++|.+.|... -..|+ +.+-.++.
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 12344556667778888888877777642 2336777777778888899999999988876 55676 77888899
Q ss_pred HHHHhcCCHHHHHH--HHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 181 GACRIHDNLEAAER--AAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 181 ~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..+...|+...|.. ++..+.+.+|.+...|-.+...+-+.|+.++|.+.|+...+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999888888 99999999999999999999999999999999999998754
No 124
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.95 E-value=0.00019 Score=51.51 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCccccccCCcHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHH
Q 048142 28 TMVSLLLACTHLGALEVGMWLHPYIMKKNI-EVDVGLGMALKDVMTLTALIVVLAMCG--------QGNKALEYFYEMQI 98 (352)
Q Consensus 28 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~ 98 (352)
|-...|..|...+++...-.+|..+++.|+ . |++.+||.++.+.++.. ++.+.+.+|+.|..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~l---------Psv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~ 97 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITL---------PSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS 97 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCC---------CcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH
Confidence 345677778888999999999999999999 5 89999999999988753 35678899999999
Q ss_pred cCCCCCHhHHHHHHHHHhc
Q 048142 99 RGVKPDAITFVGVLVACSH 117 (352)
Q Consensus 99 ~g~~p~~~t~~~ll~~~~~ 117 (352)
.+++|+..||+.++..+.+
T Consensus 98 ~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 98 NKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred hccCCcHHHHHHHHHHHHH
Confidence 9999999999999988764
No 125
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.94 E-value=0.00016 Score=50.64 Aligned_cols=92 Identities=23% Similarity=0.159 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcC
Q 048142 144 YGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSR 221 (352)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 221 (352)
+..+...+...|++++|...+++. ...|+ ...+..+...+...+++++|.+.++...+..|.+..++..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445556666777777777777765 22333 3556666667777777888888777777766666667777777777788
Q ss_pred ChHHHHHHHHHHHh
Q 048142 222 KWKKVKRIRELMAE 235 (352)
Q Consensus 222 ~~~~a~~~~~~m~~ 235 (352)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888777776654
No 126
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.93 E-value=0.0028 Score=64.69 Aligned_cols=229 Identities=11% Similarity=0.045 Sum_probs=150.2
Q ss_pred cCCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCCccccccCCcHHHH
Q 048142 3 EDSACEEALLLFREVQHKGL---TG--DKVTMVSLLLACTHLGALEVGMWLHPYIMKK----NIEVDVGLGMALKDVMTL 73 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~l~~~~~~ 73 (352)
..|++++|...+++.....- .+ ...++..+...+...|+++.|...+++.... +.. +.. .....+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~-----~~~~~~ 576 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-QLP-----MHEFLL 576 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-ccc-----HHHHHH
Confidence 46899999999888764211 11 1234556667788899999999998886653 211 110 123445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHH-----
Q 048142 74 TALIVVLAMCGQGNKALEYFYEMQIR--GVKPD--AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHY----- 144 (352)
Q Consensus 74 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~----- 144 (352)
..+...+...|++++|...+.+.... ...|. ..++..+.......|+.++|...+...............+
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 56667777889999999999887553 11222 3345556667778999999999988875421111111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC-C-CcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----C-CCcchHHH
Q 048142 145 GCLVYILGRAGRIAKAEELIKNMPM-A-LDH----FVLGGLLGACRIHDNLEAAERAAQQLLELL-----P-DNGGSYVI 212 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~ 212 (352)
...+..+...|+.+.|...+..... . ... ..+..+..++...|+.++|...+++..... + ....+...
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 1122445568999999999877621 1 111 123456667889999999999999876531 1 12345667
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 213 LSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
+..++...|+.++|...+.+..+..
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7788999999999999999887644
No 127
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.00037 Score=51.70 Aligned_cols=97 Identities=18% Similarity=0.081 Sum_probs=42.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHH
Q 048142 111 VLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD----HFVLGGLLGACR 184 (352)
Q Consensus 111 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~ 184 (352)
+...+.+.|++++|...|..+.+...-.+ ....+..+...+.+.|++++|...|+.+ ...|+ ..++..+...+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33344444455555555544443211000 1223333444455555555555555543 11111 233444444455
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCc
Q 048142 185 IHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
..|+.++|...++++.+..|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCCh
Confidence 55555555555555555544443
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.01 Score=49.26 Aligned_cols=191 Identities=21% Similarity=0.180 Sum_probs=128.7
Q ss_pred CCChhHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQH---KG-LTGDKVT-MVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIV 78 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~ 78 (352)
..++++.++++.++.. .| ..|+..+ |-.++-+....|+.+.|...++++...-.. . +-+.-..+|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S------~RV~~lkam~- 95 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--S------KRVGKLKAML- 95 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--C------hhHHHHHHHH-
Confidence 4577888888888864 34 5566544 445666667788888999888888776421 1 2222222222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHH
Q 048142 79 VLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158 (352)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 158 (352)
+-..|++++|+++++.+.+.. +-|.+++---+...-..|+.-+|++-+....+ .+..|...|.-+-..|...|+++
T Consensus 96 -lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 96 -LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred -HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHH
Confidence 334688999999999988764 44566676555555566777788887777776 46678888999999999999999
Q ss_pred HHHHHHHhC-CCCCcH-HHHHHHHHHH---HhcCCHHHHHHHHHHHHHhCCCCc
Q 048142 159 KAEELIKNM-PMALDH-FVLGGLLGAC---RIHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 159 ~A~~~~~~m-~~~p~~-~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
+|.-.++++ -.+|-. ..+..+...+ ....+.+.|.+.|.+..+..+.+.
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 999999887 334443 3333333332 233456777888888877766443
No 129
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.84 E-value=0.0055 Score=62.63 Aligned_cols=263 Identities=14% Similarity=-0.002 Sum_probs=161.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDK----VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIV 78 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~ 78 (352)
..|++++|...+++....--..+. .+.+.+...+...|+++.|...+.+.....-...... ....+++.+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~----~~~~~~~~la~ 539 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH----YALWSLLQQSE 539 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH----HHHHHHHHHHH
Confidence 468999999999987653111122 3445566667889999999999988875321111000 12345566677
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCC--C-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhc-CCCC--ChhHHHHHH
Q 048142 79 VLAMCGQGNKALEYFYEMQIR----GVK--P-DAITFVGVLVACSHAGLVDERISHFNLMSEKY-GIRP--SIEHYGCLV 148 (352)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-g~~p--~~~~~~~li 148 (352)
.+...|++++|...+++.... |.. | ....+..+...+...|++++|...+.+..... ...+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 888999999999999887542 221 1 22334455556677899999999988875421 1112 233444566
Q ss_pred HHHHHcCCHHHHHHHHHhC----CCCCcHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc----hHHHHHH
Q 048142 149 YILGRAGRIAKAEELIKNM----PMALDHFVL-----GGLLGACRIHDNLEAAERAAQQLLELLPDNGG----SYVILSN 215 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m----~~~p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~li~ 215 (352)
..+...|+.++|.+.++.. ........+ ...+..+...|+.+.|...+.......+.... .+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 6788899999999988776 111111111 11224455688999999887765432212211 1346677
Q ss_pred HHhhcCChHHHHHHHHHHHhc----CCCCCCceeEEEEcceeehhhhcCcccCchhhhhcC
Q 048142 216 RYSSSRKWKKVKRIRELMAER----NIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDM 272 (352)
Q Consensus 216 ~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 272 (352)
++...|+.++|...+++.... |..++... ........+.+.|+..+|...+.+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~---~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNR---NLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999987643 32221000 0111223456788888887776644
No 130
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0015 Score=56.58 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=62.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH-HHHHHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG-CLVYILGR 153 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~-~li~~~~~ 153 (352)
+|.+++.-..++++.+-.++....-=...|..-| .+..+.+..|...+|.++|-.+... .++ |..+|- .|.++|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHh
Confidence 3444444455566666666655544222222222 3555666666666666666555421 222 333443 33455666
Q ss_pred cCCHHHHHHHHHhCCCCCcHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhC
Q 048142 154 AGRIAKAEELIKNMPMALDHFVLGGLL-GACRIHDNLEAAERAAQQLLELL 203 (352)
Q Consensus 154 ~g~~~~A~~~~~~m~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~ 203 (352)
++..+-|.+++-++....+..+.--+| +-|-+.+.+--|-+.|+.+...+
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 666666666666554222333332222 34555555555555555554443
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.0012 Score=50.94 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 218 (352)
....-.+-..+...|++++|..+|+.+ ...| +..-|-.|-..+-..|++++|+..|.......|.|+..+-.+..++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445555677889999999999887 3344 46667778888888899999999999988888888889988999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 048142 219 SSRKWKKVKRIRELMAER 236 (352)
Q Consensus 219 ~~g~~~~a~~~~~~m~~~ 236 (352)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999988876643
No 132
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0037 Score=52.96 Aligned_cols=192 Identities=14% Similarity=0.123 Sum_probs=125.2
Q ss_pred ccCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccc--cccC--CcH------
Q 048142 2 VEDSACEEALLLFREVQHK-GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGL--GMAL--KDV------ 70 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~l--~~~------ 70 (352)
.+.|++++|++-|....+. |.. ....||..+.- .+.|+.+.|++...+++++|+.-.+.. +... ||+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 3679999999999998874 555 47788877754 577899999999999999887533222 1111 221
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-
Q 048142 71 ---------MTLTALIVVLAMCGQGNKALEYFYEMQI-RGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP- 139 (352)
Q Consensus 71 ---------~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p- 139 (352)
..+|.-...+.+.|+++.|.+-+-.|.- .....|++|...+.-. -..+++.++.+-+.-+. ++.|
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL---~~nPf 308 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLL---QQNPF 308 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHH---hcCCC
Confidence 2344444445678899999999888853 3356678887655422 22455666666565555 4455
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhCCC---C-CcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNMPM---A-LDHFVLGGLLGACRIHDNLEAAERAAQQL 199 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (352)
-..|+..++-.||++.-++-|-+++.+-+. + .+...|+.|=..--..-..++|++-+..+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 567899999999999999999999876521 1 23344443333223334566665554443
No 133
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.82 E-value=0.011 Score=51.22 Aligned_cols=223 Identities=11% Similarity=0.028 Sum_probs=160.1
Q ss_pred ccCCChhHHHHHHHHHHHCCCC------------CCHHHH--HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC
Q 048142 2 VEDSACEEALLLFREVQHKGLT------------GDKVTM--VSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL 67 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~------------p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 67 (352)
.+.|.+++|..=|+....+... |-...| ...+..+.-.|+...|++....+++..+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~---------- 186 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP---------- 186 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc----------
Confidence 4679999999999999875321 111111 2233344567888889998888888554
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
.|...|-.=..+|...|++..|+.=++...+.. .-++.++--+-..+-..|+.+.++...++-. .+.||...+-..
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~ 262 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPF 262 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHH
Confidence 777888888899999999999998777766542 3345566666677788899999888877776 567764332111
Q ss_pred -------------HHHHHHcCCHHHHHHHHHhC-CCCCcH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 048142 148 -------------VYILGRAGRIAKAEELIKNM-PMALDH-----FVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGG 208 (352)
Q Consensus 148 -------------i~~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (352)
+....+.++|.++++-.+.. ...|.. ..+..+-.++...+++.+|++...++++..|.|+.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 11233456777777666654 445552 23444556778889999999999999999999999
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 209 SYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
++---..+|.-...+++|..-|+...+.+-
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 998888999999999999999998876543
No 134
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0034 Score=61.37 Aligned_cols=223 Identities=13% Similarity=0.202 Sum_probs=142.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
++-+++|..+|+... .+....+.||. ..+.++.|.++-+.. .....|+.+..+-.+.
T Consensus 1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~---------------n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC---------------NEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred hhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh---------------CChHHHHHHHHHHHhc
Confidence 445677777775432 24555555553 356667776655544 2335899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 048142 84 GQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEEL 163 (352)
Q Consensus 84 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 163 (352)
|...+|++-|-+. -|+..|.-+++...+.|.+++-.+++.-..++ .-.|...+ .||-+|++.+++.+-+++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHH
Confidence 9999999887432 26778999999999999999999988777665 55666544 899999999999998887
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------------------CCCCcchHHHHHHHHhhcCC
Q 048142 164 IKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLEL---------------------LPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 164 ~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------~~~~~~~~~~li~~~~~~g~ 222 (352)
+. -|+..-...+-.-|...|.++.|.-+|.....- ...+..||..+-.+|...+.
T Consensus 1189 i~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1189 IA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhh
Confidence 63 355555555556666666666665555433110 11234555555555555444
Q ss_pred hHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhc
Q 048142 223 WKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFD 271 (352)
Q Consensus 223 ~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 271 (352)
+.-| +-.|+.. ..-.-.+..++.-|...|+.++.+.+++.
T Consensus 1265 FrlA-------QiCGL~i--ivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1265 FRLA-------QICGLNI--IVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhHH-------HhcCceE--EEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 3322 2234320 00001112366667788998888887753
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0018 Score=61.90 Aligned_cols=211 Identities=12% Similarity=0.037 Sum_probs=127.2
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCccccccC--CcHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK-NIEVDVGLGMAL--KDVMTLTALI 77 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l--~~~~~~~~li 77 (352)
|..-|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.--+..|... |... +..+. |+ ..=.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA---lR~a~q~~~-e~eakvA 807 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA---LRRAQQNGE-EDEAKVA 807 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH---HHHHHhCCc-chhhHHH
Confidence 345688888877765554 4678999999999999998887666665431 1100 00000 11 1111111
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCH
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRI 157 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 157 (352)
..-...|.+++|..+|.+-++. -.|=+.|...|.+++|.++-+.--+ + -=..||......+...++.
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHHHHHHhhccH
Confidence 2224678899999999887653 3455567778999999886544321 1 1234566666667778888
Q ss_pred HHHHHHHHhCC----------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------------
Q 048142 158 AKAEELIKNMP----------------------MALDHFVLGGLLGACRIHDNLEAAERAAQQLLELL------------ 203 (352)
Q Consensus 158 ~~A~~~~~~m~----------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------------ 203 (352)
+.|++.|++.+ -..|...|.---.-+-..|+.|.|+.++....+-.
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT 954 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence 88888888762 11233333333344456788888888887765420
Q ss_pred ---------CCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 204 ---------PDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 204 ---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
..|......|.+.|-..|++.+|...|.+.+
T Consensus 955 ~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 955 DKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1133344456666666666666666666554
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00041 Score=48.43 Aligned_cols=92 Identities=18% Similarity=0.162 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHH
Q 048142 73 LTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILG 152 (352)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 152 (352)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+. ...+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4556666777777777777777776542 223355666666666777777777777766542 1223345666666666
Q ss_pred HcCCHHHHHHHHHhC
Q 048142 153 RAGRIAKAEELIKNM 167 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m 167 (352)
..|++++|...+...
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 677777776666554
No 137
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.78 E-value=0.011 Score=55.13 Aligned_cols=113 Identities=24% Similarity=0.237 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH------HHHHcCCHHHHHHHHHhC-CCCCcHHHH-H
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY------ILGRAGRIAKAEELIKNM-PMALDHFVL-G 177 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~------~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~ 177 (352)
..|....-+..-.|+...|..+.++..+...-.|+...|.-... ...++|.+++|.+.+..- +...|-..+ .
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e 223 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence 34555666666678888888888888765333466555544332 344667777777777655 111232222 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 048142 178 GLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 218 (352)
+-..-+.+.+++++|..++..++...|.+...|..+..++.
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 33345677888888888888888888888777777777765
No 138
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.77 E-value=0.01 Score=55.40 Aligned_cols=101 Identities=10% Similarity=-0.026 Sum_probs=80.1
Q ss_pred CCChh--HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHH
Q 048142 138 RPSIE--HYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVIL 213 (352)
Q Consensus 138 ~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 213 (352)
+|... ++-.++..|-+.|+++.|...++.. +-.|+ +.-|..-...+...|++++|...+++..+.+.+|...=.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 34443 4445778888999999999999887 65677 45566666788889999999999999999888886554466
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 214 SNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 214 i~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
.....++.+.++|.++.....+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 6777889999999999999887775
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.76 E-value=0.00086 Score=63.26 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=64.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 048142 32 LLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGV 111 (352)
Q Consensus 32 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 111 (352)
.+.+......|.+|..+++.+...... .--|.-+...|+..|+++.|.++|-+.- -|+-.
T Consensus 738 aieaai~akew~kai~ildniqdqk~~-----------s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~da 797 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA-----------SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDA 797 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc-----------cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHH
Confidence 344555666777777777766554321 1124555566677777777777665321 23445
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 048142 112 LVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP 168 (352)
Q Consensus 112 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 168 (352)
|..|.+.|++++|.++-.+.. |-......|-+-..-+-+.|++.+|.+++-.++
T Consensus 798 i~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 666777777777766655442 434445555555555555666666666555443
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=5.9e-05 Score=52.53 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 048142 119 GLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDH-FVLGGLLGACRIHDNLEAAERAAQ 197 (352)
Q Consensus 119 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~ 197 (352)
|+++.|..+++++.+.....|+...+-.+..+|.+.|++++|..++++.+..|+. ...-.+..++...|++++|+..++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4555555555555543111112233333455555555555555555553222221 222223344555555555555554
Q ss_pred H
Q 048142 198 Q 198 (352)
Q Consensus 198 ~ 198 (352)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 141
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.0022 Score=55.69 Aligned_cols=143 Identities=12% Similarity=0.101 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRG-VKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
.+|-.++...-+.+..+.|..+|.+..+.+ +..+.+...+++. +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 478899999999999999999999998543 2333333344443 33357788899999999985 4456777889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 150 ILGRAGRIAKAEELIKNM-PMALD----HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+..+.+. ....+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999987 22333 35999999999999999999999999988766643 444455444
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.0012 Score=48.87 Aligned_cols=96 Identities=16% Similarity=0.073 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---cchHHHH
Q 048142 142 EHYGCLVYILGRAGRIAKAEELIKNM-PMALD----HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN---GGSYVIL 213 (352)
Q Consensus 142 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 213 (352)
.++..+...+.+.|++++|...|+.+ ...|+ ...+..+...+...|+++.|...++.+....|.+ ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34567788889999999999999988 22333 3566678889999999999999999998866553 4567888
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcC
Q 048142 214 SNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 214 i~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
..++.+.|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999999998774
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=0.00013 Score=50.82 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=60.4
Q ss_pred CCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 4 DSACEEALLLFREVQHKGL-TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
.|+++.|+.+|+++..... .|+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~----------~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP----------SNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH----------CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC----------CCHHHHHHHHHHHHH
Confidence 6899999999999998643 12455566689999999999999999988 33222 232344455788999
Q ss_pred cCChHHHHHHHHH
Q 048142 83 CGQGNKALEYFYE 95 (352)
Q Consensus 83 ~g~~~~A~~~~~~ 95 (352)
.|++++|+++|++
T Consensus 71 l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 71 LGKYEEAIKALEK 83 (84)
T ss_dssp TT-HHHHHHHHHH
T ss_pred hCCHHHHHHHHhc
Confidence 9999999999876
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.64 E-value=0.00044 Score=62.69 Aligned_cols=105 Identities=18% Similarity=0.103 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 5 SACEEALLLFREVQHK--GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
.+++++..++.+.+.. ....-..|.+++|..|.+.|..+.+..++..=...|+= ||..++|.||..+.+
T Consensus 80 ~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF---------~D~~s~n~Lmd~fl~ 150 (429)
T PF10037_consen 80 DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIF---------PDNFSFNLLMDHFLK 150 (429)
T ss_pred hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccC---------CChhhHHHHHHHHhh
Confidence 4567788888777764 22233456689999999999999999999998889987 888999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHA 118 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 118 (352)
.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 151 ~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 151 KGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999888888888888888777665
No 145
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.63 E-value=0.0021 Score=60.74 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=118.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG 84 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g 84 (352)
..+.+|+.+++.++... ....-|.-+.+-|+..|+++.|.++|-+. + .++--|..|.++|
T Consensus 746 kew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~---------------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D---------------LFKDAIDMYGKAG 805 (1636)
T ss_pred hhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c---------------hhHHHHHHHhccc
Confidence 44566666666665432 12233556667778888888887777543 1 3566677788888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 048142 85 QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELI 164 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 164 (352)
++++|.++-.+. .|.......|.+-..-+-+.|++.+|.++|-.+. .|+. -|.+|-+.|..++.+++.
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHH
Confidence 888887776543 2334445556666666667777777777664432 3443 467788888888888887
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 165 KNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 165 ~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
++-.-..-..|-..+..-+-..|++..|+.-|-+. .-|.+-+++|-..+-|++|.++-+
T Consensus 874 ~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 76621111344555666677777777777766554 235666778888888888877654
No 146
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.60 E-value=0.037 Score=51.90 Aligned_cols=228 Identities=14% Similarity=0.131 Sum_probs=144.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC------CCCccccccC----------
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNI------EVDVGLGMAL---------- 67 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~~~~~~~l---------- 67 (352)
.|-++-+++++++-.+. .| ..-+--|.-+++.+++++|-+.+...+.... +.+--.+..+
T Consensus 151 ~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~ 226 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK 226 (835)
T ss_pred CCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch
Confidence 46677788888887763 34 3345667777888888888777766553211 0000000000
Q ss_pred -----------------CcH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc-----------
Q 048142 68 -----------------KDV--MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH----------- 117 (352)
Q Consensus 68 -----------------~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------- 117 (352)
+|. ..|++|...|.+.|.+++|.++|++....- .+..-|+.+.++|+.
T Consensus 227 ~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 227 VQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred hcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333 469999999999999999999999877642 233334444444431
Q ss_pred -------------------------------------------------------cCCHHHHHHHHHHhhHhcCCCCC--
Q 048142 118 -------------------------------------------------------AGLVDERISHFNLMSEKYGIRPS-- 140 (352)
Q Consensus 118 -------------------------------------------------------~g~~~~a~~~~~~m~~~~g~~p~-- 140 (352)
.|+..+-...|.+..+ .+.|.
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~--~vdP~ka 382 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK--TVDPKKA 382 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH--ccCcccC
Confidence 1233333344444433 23332
Q ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC--c-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------
Q 048142 141 ----IEHYGCLVYILGRAGRIAKAEELIKNM---PMAL--D-HFVLGGLLGACRIHDNLEAAERAAQQLLEL-------- 202 (352)
Q Consensus 141 ----~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------- 202 (352)
...|-.+.+.|-.+|+++.|..+|++. +.+- | ..+|..-...-.++.+++.|.++.+...-.
T Consensus 383 ~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~ 462 (835)
T KOG2047|consen 383 VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEY 462 (835)
T ss_pred CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhh
Confidence 234666777888999999999999987 2211 1 456776677777888899998887775432
Q ss_pred ----CCC------CcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 203 ----LPD------NGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 203 ----~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
.|+ +...|...++.--..|-++....+|+++.+..+.
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 111 2345666677777778888888888888776554
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.0016 Score=58.67 Aligned_cols=84 Identities=8% Similarity=-0.085 Sum_probs=37.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
.|++++|++.|++..... +-+...|..+..++.+.|++++|...++++++... .+...|..+..+|...
T Consensus 15 ~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P----------~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP----------SLAKAYLRKGTACMKL 83 (356)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------CCHHHHHHHHHHHHHh
Confidence 344445555554444421 11333444444444444555555444444444321 2233444444444444
Q ss_pred CChHHHHHHHHHHHH
Q 048142 84 GQGNKALEYFYEMQI 98 (352)
Q Consensus 84 g~~~~A~~~~~~m~~ 98 (352)
|++++|+..|++..+
T Consensus 84 g~~~eA~~~~~~al~ 98 (356)
T PLN03088 84 EEYQTAKAALEKGAS 98 (356)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555554444443
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0069 Score=48.45 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALK-DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP- 103 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 103 (352)
...+..+...+...|++++|...|++..+....+ + ....|..+...+.+.|++++|...+++.... .|
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 104 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDP--------NDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPK 104 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc
Confidence 3456667777777888888888888877654321 2 1356777778888888888888888877764 33
Q ss_pred CHhHHHHHHHHHhccCCHH
Q 048142 104 DAITFVGVLVACSHAGLVD 122 (352)
Q Consensus 104 ~~~t~~~ll~~~~~~g~~~ 122 (352)
+...+..+...+...|+..
T Consensus 105 ~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred cHHHHHHHHHHHHHcCChH
Confidence 3445555666666666543
No 149
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.015 Score=53.89 Aligned_cols=226 Identities=14% Similarity=0.109 Sum_probs=139.8
Q ss_pred ccCCChhHHHHHHHHHHHCC-------------CCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccc---c
Q 048142 2 VEDSACEEALLLFREVQHKG-------------LTGDK-VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGL---G 64 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g-------------~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~ 64 (352)
...|++.+|+++++...+.+ +.-.. ..-.-+...+-..|+-++|..++...++......+.. .
T Consensus 186 i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~ 265 (652)
T KOG2376|consen 186 IENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAV 265 (652)
T ss_pred HhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHh
Confidence 45789999999998883211 11111 1123355566788999999999999888765432111 1
Q ss_pred ccC---------------------------------------------------------------------CcHHHHHH
Q 048142 65 MAL---------------------------------------------------------------------KDVMTLTA 75 (352)
Q Consensus 65 ~~l---------------------------------------------------------------------~~~~~~~~ 75 (352)
|-+ |....=+.
T Consensus 266 NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l 345 (652)
T KOG2376|consen 266 NNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL 345 (652)
T ss_pred cchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH
Confidence 111 33333333
Q ss_pred HHHHHHh-cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHH--------HhhHhcCCCCChhHHH
Q 048142 76 LIVVLAM-CGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFN--------LMSEKYGIRPSIEHYG 145 (352)
Q Consensus 76 li~~~~~-~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~--------~m~~~~g~~p~~~~~~ 145 (352)
+..++-. ...+.+|.+++...-+. .+-+ ...--.++......|+++.|.+++. .+.+- +..|. +..
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~-~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~--~V~ 421 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADG-HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPG--TVG 421 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChh--HHH
Confidence 3333322 22466777777666553 2222 3344456666778899999998888 44432 44444 455
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC--------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 048142 146 CLVYILGRAGRIAKAEELIKNM--------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNR 216 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 216 (352)
+++..|.+.++-+.|..++.+. ...+. ..+|.-+..--.++|+.++|..+++++.+..|+|..+...++.+
T Consensus 422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 6777888888777777776654 11111 22333333444577999999999999999899999999999999
Q ss_pred HhhcCChHHHHHHHHH
Q 048142 217 YSSSRKWKKVKRIREL 232 (352)
Q Consensus 217 ~~~~g~~~~a~~~~~~ 232 (352)
|++. +.+.|..+-..
T Consensus 502 ~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 502 YARL-DPEKAESLSKK 516 (652)
T ss_pred HHhc-CHHHHHHHhhc
Confidence 8764 45666655443
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0012 Score=57.42 Aligned_cols=131 Identities=10% Similarity=0.032 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI 106 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 106 (352)
.+|..++...-+.+..+.|+.+|.+..+.+... ..+....+++..+ -.++.+.|..+|+...+. +..+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--------~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~ 71 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--------YHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---------THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHH
Confidence 578899999999999999999999998654210 4445555555443 356777899999999876 666777
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 107 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
.|..-++.+.+.++.+.|..+|++......-.. ....|...++.=.+.|+++.+..+.+++
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888889999999999999999999986422222 3358999999999999999999998877
No 151
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.56 E-value=0.007 Score=56.50 Aligned_cols=224 Identities=12% Similarity=0.146 Sum_probs=123.8
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA------ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS- 140 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~- 140 (352)
.++..|..-+..+ .|+..+-...|.+..+. +.|-. ..|..+.+.|-..|+++.|..+|++..+. ..+--
T Consensus 347 ~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~ 422 (835)
T KOG2047|consen 347 HNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVE 422 (835)
T ss_pred ccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchH
Confidence 3444554444332 45666777777776654 44422 23666677777788888888888877653 22211
Q ss_pred --hhHHHHHHHHHHHcCCHHHHHHHHHhC---CCC-----------------CcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 141 --IEHYGCLVYILGRAGRIAKAEELIKNM---PMA-----------------LDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 141 --~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~-----------------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
..+|-....+=.+..+++.|+.+++.. |-. .+...|...+...-..|-++....++++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 234444445555667777787777765 211 1223444444444444555555555555
Q ss_pred HHHh----------------------------------CC-CC-cchHHHHHHHHh---hcCChHHHHHHHHHHHhcCCC
Q 048142 199 LLEL----------------------------------LP-DN-GGSYVILSNRYS---SSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 199 ~~~~----------------------------------~~-~~-~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~ 239 (352)
+.+. .+ |+ ...|++.+.-+. ...+++.|..+|++..+ |.+
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 4432 21 11 134444444332 23468999999999988 776
Q ss_pred CCCceeEEEEcceeehhhhcCcccCchhhhhcCC----HHHHhhhhhhhhHHHHHHHhhhCCC
Q 048142 240 KPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMD----EEEKETALNLHTEKLAITFGLVSPM 298 (352)
Q Consensus 240 p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~ 298 (352)
|...-+..+.-+.++. +-|....++.+++... ...+..+...+-.+.+..||+..+.
T Consensus 582 p~~aKtiyLlYA~lEE--e~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEE--EHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred HHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 6533332222221111 4588888888887543 2333344556667777778776554
No 152
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.55 E-value=0.02 Score=54.65 Aligned_cols=209 Identities=17% Similarity=0.154 Sum_probs=148.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 048142 14 FREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYF 93 (352)
Q Consensus 14 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~ 93 (352)
++++....+.-|...|-.|.-+....|+++.+-+.|++....-+ .....|+.+-..|...|.-..|..++
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~----------~~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF----------GEHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh----------hhHHHHHHHHHHHHHhccchHHHHHH
Confidence 34444445666889999999999999999999999999876544 34468999999999999999999999
Q ss_pred HHHHHcCCCCCHh-HHHHHHHHHh-ccCCHHHHHHHHHHhhHhcCCC---CChhHHHHHHHHHHHc-----------CCH
Q 048142 94 YEMQIRGVKPDAI-TFVGVLVACS-HAGLVDERISHFNLMSEKYGIR---PSIEHYGCLVYILGRA-----------GRI 157 (352)
Q Consensus 94 ~~m~~~g~~p~~~-t~~~ll~~~~-~~g~~~~a~~~~~~m~~~~g~~---p~~~~~~~li~~~~~~-----------g~~ 157 (352)
++-....-.|+.. .+...-..|. +.+..+++..+-.+....++-. ..+..|-.+.-+|... ...
T Consensus 381 ~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h 460 (799)
T KOG4162|consen 381 RESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALH 460 (799)
T ss_pred HhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 8765543235433 3433334443 4677888887777766532221 2344555555555532 124
Q ss_pred HHHHHHHHhC----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHhhcCChHHHHHHHHH
Q 048142 158 AKAEELIKNM----PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLEL-LPDNGGSYVILSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 158 ~~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (352)
.++++.+++. +..|++.-|-++- |+..++++.|.+..++..+. ...++..|..|.-.+...+++.+|..+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4566666665 4556666664444 55667899999999999886 667788899999999999999999999876
Q ss_pred HH
Q 048142 233 MA 234 (352)
Q Consensus 233 m~ 234 (352)
..
T Consensus 539 al 540 (799)
T KOG4162|consen 539 AL 540 (799)
T ss_pred HH
Confidence 54
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0037 Score=50.00 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=83.6
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD--AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHY 144 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~ 144 (352)
.....|..+...|...|++++|+..|++.......|. ...+..+...+.+.|++++|...+.+..+. .| +...+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~ 109 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSAL 109 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHH
Confidence 4555677778888888888888888888876433322 356777788888888888888888887753 34 45556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcC
Q 048142 145 GCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSR 221 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 221 (352)
..+...|...|+...+..-++.. ...+++|.+++++..+..|.+ |..++..+...|
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 66666777766655544332211 012566777777776665554 545555554444
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.52 E-value=0.0062 Score=47.13 Aligned_cols=100 Identities=7% Similarity=-0.102 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
......+-..+...|++++|..+|+.+..... .+..-|-.|..++-..|++++|++.|........ -|+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp----------~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp 103 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA----------WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAP 103 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc----------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCc
Confidence 44555666667889999999999999888654 4666788888888899999999999998887642 356
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcC
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYG 136 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g 136 (352)
..+-.+-.++...|+.+.|.+.|+......+
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 7788888889999999999999988876533
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.0064 Score=57.38 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 174 FVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
..|..+.-.....|++++|...+++..+..| +...|..+...+...|+.++|.+.+++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444443333344555555555555444443 34444555555555555555555554443
No 156
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.45 E-value=0.068 Score=49.21 Aligned_cols=206 Identities=12% Similarity=0.092 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cC--ChHHHHHHHHHHHHc-CCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTH-LG--ALEVGMWLHPYIMKK-NIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g--~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
+++.++++.....-..-+..+|..+.+-=-. .+ ..+....+++++... ..+ |+ .+|..+|+.-.+.
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~---------~t-Lv~~~~mn~irR~ 379 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID---------LT-LVYCQYMNFIRRA 379 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC---------Cc-eehhHHHHHHHHh
Confidence 4555555555443222234444433322111 11 245556666666553 233 22 3788899988888
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 84 GQGNKALEYFYEMQIRGVKP-DAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 84 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
.-++.|..+|.+..+.+..+ +...+++++..+| .++.+.|.++|+-=.+.+|-. +.--...++.+...++-..|..
T Consensus 380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHH
Confidence 88999999999999998888 7778888888777 568889999998877654433 3334567888888999999999
Q ss_pred HHHhC---CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CCcchHHHHHHHHhhcCChHHH
Q 048142 163 LIKNM---PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLP----DNGGSYVILSNRYSSSRKWKKV 226 (352)
Q Consensus 163 ~~~~m---~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a 226 (352)
+|++. +..|| ..+|..+|.--..-|+...+.++-+++....| +....-..+++.|.-.+....-
T Consensus 457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 99987 22333 68999999999999999999999888766544 2223445666777666655433
No 157
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.056 Score=47.17 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=125.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVS-LLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.+.++..|..+++.-...+-+-.. ..+. +..++...|++++|...+..+.+..- ++...|-.|.-++.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~-~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~----------~~~el~vnLAcc~F 102 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEED-SLQLWIAHCYFHLGDYEEALNVYTFLMNKDD----------APAELGVNLACCKF 102 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHhccCC----------CCcccchhHHHHHH
Confidence 356777888877665543322222 2233 34455788999999998888776432 55566777777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
-.|.+.+|..+-.+. +-++..-..|+..--+.++-++-..+.+.+... ..---+|....-..-.+.+|.
T Consensus 103 yLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred HHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHH
Confidence 788888887765432 223444455666666777777777666666542 122223444433344799999
Q ss_pred HHHHhC-CCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh
Q 048142 162 ELIKNM-PMALDHFVLGGLLG-ACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSS 219 (352)
Q Consensus 162 ~~~~~m-~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 219 (352)
+++++. ...|.....|..+. +|.+..-++-+.++++-.++..|+++..-|.......+
T Consensus 172 dvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 172 DVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFR 231 (557)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhh
Confidence 999987 44566666665554 56677778899999998888888877766655544443
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.0089 Score=56.42 Aligned_cols=134 Identities=14% Similarity=0.020 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHhccC-----ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC--------ChH
Q 048142 21 GLTGDKVTMVSLLLACTHLG-----ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG--------QGN 87 (352)
Q Consensus 21 g~~p~~~t~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g--------~~~ 87 (352)
+.+.|...|...+.+..... +...|..+|++..+... -....|..+..+|.... +..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP----------~~a~a~A~la~~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP----------DFTYAQAEKALADIVRHSQQPLDEKQLA 401 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 34567889999888864432 36789999999998653 23344555444332211 112
Q ss_pred HHHHHHHHHHHc-CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 048142 88 KALEYFYEMQIR-GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKN 166 (352)
Q Consensus 88 ~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 166 (352)
.+.+...+.... ....+...|..+.-.....|++++|...+++... +.|+...|..+...+...|+.++|.+.+++
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222222222211 1222334444443333344555555555555543 234555555555555555555555555554
Q ss_pred C
Q 048142 167 M 167 (352)
Q Consensus 167 m 167 (352)
.
T Consensus 479 A 479 (517)
T PRK10153 479 A 479 (517)
T ss_pred H
Confidence 3
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0026 Score=50.72 Aligned_cols=94 Identities=12% Similarity=-0.071 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD----HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 214 (352)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|+.++|...++......|....++..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455666667777778888888887776 22222 346777778888888888888888888777777777777777
Q ss_pred HHHh-------hcCChHHHHHHHHHH
Q 048142 215 NRYS-------SSRKWKKVKRIRELM 233 (352)
Q Consensus 215 ~~~~-------~~g~~~~a~~~~~~m 233 (352)
..+. ..|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7776 777887666666543
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.43 E-value=0.00075 Score=44.80 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcC-ChHHHHHHHHHHHh
Q 048142 172 DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSR-KWKKVKRIRELMAE 235 (352)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 235 (352)
++.+|..+...+...|++++|+..|++..+..|.++..|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888888899999999999988888888888888888888888 68888888887654
No 161
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.0077 Score=57.85 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=94.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG 84 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g 84 (352)
|.+++|+.+|++-++. ..|=..|...|.|++|.++-+.=-+--+ -.||-.....+-..+
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL------------r~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL------------RNTYYNYAKYLEARR 872 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh------------hhhHHHHHHHHHhhc
Confidence 4555666666555442 2222334556666666665443222111 135555556666667
Q ss_pred ChHHHHHHHHHHH----------HcC---------CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 85 QGNKALEYFYEMQ----------IRG---------VKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 85 ~~~~A~~~~~~m~----------~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
+.+.|++.|++-. ... -.-|...|.---..+-..|+.+.|+.+|...+. |-
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~f 942 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YF 942 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hh
Confidence 7777777776431 110 012333333344444557777777777776653 55
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048142 146 CLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLL 200 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (352)
++++..|-.|+.++|-++-++-| |....-.|.+.|-..|++.+|..+|.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666777777777777777665 54555567777888888888888877754
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0086 Score=47.68 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
...|..+...+...|++++|...+++.......+. ....+|..+...|...|++++|+..+++.... .+...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-------DRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcH
Confidence 44556666666667777777777777765432210 12346677777777777777777777776653 12223
Q ss_pred hHHHHHHHHHh-------ccCCHHHHHHHH
Q 048142 106 ITFVGVLVACS-------HAGLVDERISHF 128 (352)
Q Consensus 106 ~t~~~ll~~~~-------~~g~~~~a~~~~ 128 (352)
.++..+...+. ..|+++.|...+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 44455555555 455555444333
No 163
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.38 E-value=0.013 Score=58.20 Aligned_cols=149 Identities=8% Similarity=0.014 Sum_probs=94.5
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-------
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITF-VGVLVACSHAGLVDERISHFNLMSEKYGIRP------- 139 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p------- 139 (352)
.+...|..|+..|...+++++|.++.++-.+ ..|+...+ -.+...+.+.++.+++..+ .+.....-..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 5667899999999999999999999997666 45655432 2222255566666666554 3332111111
Q ss_pred ----------ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 048142 140 ----------SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 140 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
+...+-.+..+|-+.|+.++|..+++++ ...| |+.+.|.+...|... +.++|.+++.+....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 1244555666777778888888888776 3344 466777777777777 788887777776543
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 208 GSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
|...+++..+.++|.++..
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHh
Confidence 3344455555555555544
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.34 E-value=0.0086 Score=53.95 Aligned_cols=88 Identities=7% Similarity=-0.082 Sum_probs=53.6
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 048142 35 ACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVA 114 (352)
Q Consensus 35 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 114 (352)
.+...|+++.|.+.|+++++... .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P----------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~ 79 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDP----------NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTA 79 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 34456666677776666666443 344556666666666677777776666666531 2234456666666
Q ss_pred HhccCCHHHHHHHHHHhhH
Q 048142 115 CSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 115 ~~~~g~~~~a~~~~~~m~~ 133 (352)
|...|++++|...|++..+
T Consensus 80 ~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 6666666666666666653
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.30 E-value=0.18 Score=49.22 Aligned_cols=219 Identities=13% Similarity=0.070 Sum_probs=134.0
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLAC--THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
..+++..|+.....+.+. .|+.. |..++.++ .+.|+.++|..+++.....+. .|..|-..+-.+|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~----------~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG----------TDDLTLQFLQNVY 87 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC----------CchHHHHHHHHHH
Confidence 356788888888877764 45543 34445554 678888888877777665544 4556888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC----
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR---- 156 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~---- 156 (352)
...++.++|..+|++... .-|+..-...+..+|.+.+.+.+-.++--++-+. ++-.+..+=++++.+...-.
T Consensus 88 ~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcc
Confidence 899999999999988776 4667777777888888888776655544444432 22233333344444443211
Q ss_pred ------HHHHHHHHHhCCCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHh-CCCCcchHHHHHHHHhhcCChH
Q 048142 157 ------IAKAEELIKNMPMAL----DHFVLGGLLGACRIHDNLEAAERAAQQ-LLEL-LPDNGGSYVILSNRYSSSRKWK 224 (352)
Q Consensus 157 ------~~~A~~~~~~m~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~-~~~~~~~~~~li~~~~~~g~~~ 224 (352)
+.-|.+.++.+-..+ +..-.-.-+..+-..|++++|..++.. ..+. .+.+...-+.-++.+...++|.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 122444444441111 122222223344566778888888743 3332 3334444455666777777787
Q ss_pred HHHHHHHHHHhcCC
Q 048142 225 KVKRIRELMAERNI 238 (352)
Q Consensus 225 ~a~~~~~~m~~~g~ 238 (352)
+..++-.++..+|-
T Consensus 244 ~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 244 ELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHhCC
Confidence 77777777766654
No 166
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.28 E-value=0.062 Score=48.05 Aligned_cols=167 Identities=19% Similarity=0.161 Sum_probs=95.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCH
Q 048142 29 MVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM---CGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 29 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
...++-+|-...+++...++.+.+....-. +. . .+...--...-++.+ .|+.++|++++..+....-.++.
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~-~~--~---~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTC-DV--A---NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCcc-ch--h---cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 345555788899999999999999875211 00 0 122222344456666 89999999999997766677888
Q ss_pred hHHHHHHHHHhc---------cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH----HHHH---HhC--
Q 048142 106 ITFVGVLVACSH---------AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA----EELI---KNM-- 167 (352)
Q Consensus 106 ~t~~~ll~~~~~---------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~m-- 167 (352)
.||..+...|-. ...+++|...|.+- +.+.|+...--.+...+...|.-.+. .++- ..+
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 888887766632 22456666666654 34445544333333334444432221 1111 110
Q ss_pred -----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 168 -----PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 168 -----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
.-..|---+.+++.++.-.|+.++|.+..++|.+..|
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 1123344455566666666666666666666655533
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.27 E-value=0.00093 Score=43.75 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=30.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 181 GACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
..+...|++++|...|+.+.+..|.+...+..+..++...|++++|...|++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555554
No 168
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.26 E-value=0.034 Score=54.74 Aligned_cols=180 Identities=10% Similarity=-0.098 Sum_probs=124.2
Q ss_pred ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC
Q 048142 6 ACEEALLLFREVQHKGLTGD-KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG 84 (352)
Q Consensus 6 ~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g 84 (352)
+...|+..|-+..+. .|+ ...|..|-.-|...-+...|..-|+...+.+. .+...+......|++..
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa----------tdaeaaaa~adtyae~~ 540 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA----------TDAEAAAASADTYAEES 540 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----------hhhhhHHHHHHHhhccc
Confidence 345556555444442 333 45677777777777777888888888766443 57778999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 048142 85 QGNKALEYFYEMQIRGVKPDAITFV--GVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~ 161 (352)
+++.|..+.-.--+. -+.-...++ -.--.|...++..+|...|+... .+.| |...|..+..+|.++|++..|.
T Consensus 541 ~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred cHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHH
Confidence 999999984332221 111111222 23334567788889988888876 4566 7889999999999999999999
Q ss_pred HHHHhC-CCCCcHHHHHHHH-HHHHhcCCHHHHHHHHHHHHH
Q 048142 162 ELIKNM-PMALDHFVLGGLL-GACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 162 ~~~~~m-~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~ 201 (352)
++|.+. ..+|+..--.-.. ...+..|.+++|...+.....
T Consensus 617 KvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 617 KVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999988 4556532211122 245778999999998888754
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.0039 Score=50.59 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC----------------CHHHHHH
Q 048142 68 KDVMTLTALIVVLAMC-----GQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG----------------LVDERIS 126 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------------~~~~a~~ 126 (352)
.|-.+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 5667888888888654 667777778888889999999999999998886522 2355777
Q ss_pred HHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 127 HFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 127 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
++++|... |+.||..++..|++.+++.+.
T Consensus 125 lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 77777764 777777777777777665543
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.24 E-value=0.0021 Score=42.04 Aligned_cols=60 Identities=20% Similarity=0.065 Sum_probs=42.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 147 LVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
+...+.+.|++++|...|+++ ...| +...|..+...+...|++++|...|++..+..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345677788888888888877 4445 46677777777888888888888888887776654
No 171
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.24 E-value=0.0013 Score=51.02 Aligned_cols=69 Identities=25% Similarity=0.259 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH-----hcCCCCCCc
Q 048142 175 VLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA-----ERNIKKPPG 243 (352)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~ 243 (352)
+...++..+...|+++.|.++.+.+....|.+...|..+|.+|...|+..+|.++|+++. +.|+.|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 445566777888999999999999999999999999999999999999999999888774 468888654
No 172
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.23 E-value=0.0056 Score=45.97 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEM 96 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 96 (352)
|..++.++|.++++.|+.+....+++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 3457788888888888888887777654
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0048 Score=52.40 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=53.3
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHH
Q 048142 37 THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVAC 115 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 115 (352)
.+.+++.+|...|.+.++... .|.+-|..=..+|++.|.++.|++=.+.... +.|. ..+|..|-.+|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P----------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDP----------TNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCC----------CcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHH
Confidence 455666666666666655332 3444555555666666666666655555444 3333 33566666666
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCChhHHHHHH
Q 048142 116 SHAGLVDERISHFNLMSEKYGIRPSIEHYGCLV 148 (352)
Q Consensus 116 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 148 (352)
...|++++|.+.|++.. .+.|+-.+|-.=+
T Consensus 160 ~~~gk~~~A~~aykKaL---eldP~Ne~~K~nL 189 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKAL---ELDPDNESYKSNL 189 (304)
T ss_pred HccCcHHHHHHHHHhhh---ccCCCcHHHHHHH
Confidence 66666666666655554 3455544444333
No 174
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.17 E-value=0.043 Score=50.47 Aligned_cols=174 Identities=10% Similarity=0.035 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC
Q 048142 7 CEEALLLFREVQHK-GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ 85 (352)
Q Consensus 7 ~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~ 85 (352)
.+...+.++++... .+.|+ .+|...|+.--+...++.|+.+|.+..+.+..+ ..+..++++|..||. ++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~--------hhVfVa~A~mEy~cs-kD 416 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR--------HHVFVAAALMEYYCS-KD 416 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc--------chhhHHHHHHHHHhc-CC
Confidence 34445555555543 34444 468888999899999999999999999988763 377899999999985 67
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHH
Q 048142 86 GNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS--IEHYGCLVYILGRAGRIAKAEEL 163 (352)
Q Consensus 86 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 163 (352)
.+-|.++|+-=.+. ..-+..--..-++.+...++=..+..+|++.... ++.|+ ...|..+|+.=..-|++..+.++
T Consensus 417 ~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 417 KETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred hhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 88999999875543 3323333456788888999999999999999987 77774 67899999999999999999998
Q ss_pred HHhC----C--CCCcHHHHHHHHHHHHhcCCHHHH
Q 048142 164 IKNM----P--MALDHFVLGGLLGACRIHDNLEAA 192 (352)
Q Consensus 164 ~~~m----~--~~p~~~~~~~li~~~~~~g~~~~a 192 (352)
-+++ + ..|....-..+++-|.-.+...--
T Consensus 495 ekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 495 EKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred HHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 7765 2 222222333455555555544433
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.00078 Score=44.53 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=31.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 185 IHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
..|++++|++.|+.+.+..|.+...+..+..+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666666666666665544
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.0026 Score=41.98 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 118 AGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 118 ~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
.|++++|..+|+.+... .| +...+..+..+|.+.|++++|..+++++
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555554432 22 3444444555555555555555555554
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.006 Score=51.82 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=44.7
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHH
Q 048142 117 HAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAE 193 (352)
Q Consensus 117 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~ 193 (352)
+.+++.+|...|.+.. .+.| |.+-|-.-..+|.+.|.++.|.+=.+.. .+.|. ..+|..|-.+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3455555555555554 2344 3444444455555555555554444333 33333 445555555555555555555
Q ss_pred HHHHHHHHhCCCCc
Q 048142 194 RAAQQLLELLPDNG 207 (352)
Q Consensus 194 ~~~~~~~~~~~~~~ 207 (352)
+.|++.++.+|.+.
T Consensus 170 ~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 170 EAYKKALELDPDNE 183 (304)
T ss_pred HHHHhhhccCCCcH
Confidence 55555555555554
No 178
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.05 Score=49.93 Aligned_cols=209 Identities=12% Similarity=0.051 Sum_probs=129.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHH-------HH
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTA-------LI 77 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-------li 77 (352)
.++..|++-+....... -+..-++..-.++...|........-+...+.|-. ...-|+. +.
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre----------~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE----------LRADYKLIAKALARLG 305 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH----------HHHHHHHHHHHHHHhh
Confidence 45667777776666543 33444455666788888888877777776666643 1122333 33
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh-hHHHHHHHHHHHcCC
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI-EHYGCLVYILGRAGR 156 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~ 156 (352)
.+|.+.++++.|+..|.+....-..||.. .+....+++....+... =+.|.. .-.-.-.+.+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 46666788999999998866554444432 22233334433333322 122321 111111445667788
Q ss_pred HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 157 IAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 157 ~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
+.+|...+.++ ...| |...|..-..+|.+.|.+..|+.-.+...+..|+....|..=..++....+++.|.+.|++-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776 3334 467778888888888888888877777777777777667666666666777777777777666
Q ss_pred hcC
Q 048142 235 ERN 237 (352)
Q Consensus 235 ~~g 237 (352)
+..
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 544
No 179
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.15 E-value=0.0096 Score=44.70 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
|..++.++|.++++.|+++....+.+..- |+..+.... .+. --......|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~------------------~~~---------~~~~spl~Pt 51 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK------------------EGD---------YPPSSPLYPT 51 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc------------------cCc---------cCCCCCCCCC
Confidence 56788999999999999999988886554 333222100 000 1112345666
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
..+..+++.+|+..|++..|.++.+...+.|+++.+..+|..|+.=
T Consensus 52 ~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 52 SRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6666666666666666666666666666666655566666666553
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.11 E-value=0.12 Score=43.74 Aligned_cols=186 Identities=10% Similarity=0.027 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
+...+-.....+.+.|++++|.+.|+++...-..+.. -....-.+..+|.+.+++++|...|++..+.--.-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY-------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 3444444555567899999999999999886443110 011123466888899999999999999987532222
Q ss_pred HhHHHHHHHHHhc--c---------------CC---HHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 048142 105 AITFVGVLVACSH--A---------------GL---VDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELI 164 (352)
Q Consensus 105 ~~t~~~ll~~~~~--~---------------g~---~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 164 (352)
...|...+.+.+. . .+ ..+|...|+.+.++ |=...-..+|..-+
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl 167 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRL 167 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHH
Confidence 2344444444432 1 11 23455555555544 22223344444444
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc---chHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 165 KNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG---GSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 165 ~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
..+..+.-..-+ .+..-|.+.|.+..|..-++.+.+..|.+. .....++.+|...|..++|.++...+.
T Consensus 168 ~~l~~~la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 168 VFLKDRLAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 333211111111 344557788888888888888888666544 344567788888999998888776654
No 181
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.11 E-value=0.25 Score=48.37 Aligned_cols=192 Identities=18% Similarity=0.107 Sum_probs=127.3
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.|.|+.++|..+++.....+.. |..|...+-..|-..++.++|..+|+...+.. |+...-..+..+|.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~-----------P~eell~~lFmayv 121 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY-----------PSEELLYHLFMAYV 121 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC-----------CcHHHHHHHHHHHH
Confidence 3678999999888887765443 88899999999999999999999999998754 66667777888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC----------CHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG----------LVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
+.+++.+-.+.=-+|-+. ++-+.+.|=++++.....- -+.-|...++.+.++-|-.-+..-...-...+
T Consensus 122 R~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 887776544433333332 3334555445554443211 23456677777776633222222222233445
Q ss_pred HHcCCHHHHHHHHHh-C-CC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 152 GRAGRIAKAEELIKN-M-PM--ALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~-m-~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
...|++++|.+++.. . .. ..+...-+--+..+...+++.+..++..++....++|
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 678899999999843 2 11 1223333455667778888999999988888877776
No 182
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.058 Score=53.31 Aligned_cols=177 Identities=13% Similarity=0.068 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
+..|+.+..+-.+.|.+.+|.+.|-+. .|...|.-.|....+.|.+++-.+.+.-..+..-+|..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika---------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i 1168 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA---------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI 1168 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc---------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc
Confidence 456777777777777777776655332 23346777777777777777777777655555555554
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-----------------
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP----------------- 168 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------- 168 (352)
.+ .||-+|++.+++.+-.+++ .-|+......+.+-|-..+.++.|.-+|....
T Consensus 1169 d~--eLi~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1169 DS--ELIFAYAKTNRLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred hH--HHHHHHHHhchHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 43 5677777777766544422 12344444444444444455554444443220
Q ss_pred ------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHhhcCChHHHHHHHHH
Q 048142 169 ------MALDHFVLGGLLGACRIHDNLEAAERAAQQLLEL-LPDNGGSYVILSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 169 ------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (352)
...+..||.-+-.+|...+.+..|. |... ..-...-..-|+..|...|-+++...+++.
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 0114555665555555544433321 1111 001122345789999999999999888764
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.024 Score=42.10 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=60.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHH
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGVKPD--AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILG 152 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 152 (352)
+..++-..|+.++|+.+|++....|...+ ...+..+-..+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556678888888888888888876655 33566677778888888888888888776521111 1222222334566
Q ss_pred HcCCHHHHHHHHHh
Q 048142 153 RAGRIAKAEELIKN 166 (352)
Q Consensus 153 ~~g~~~~A~~~~~~ 166 (352)
..|+.++|+..+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888888877644
No 184
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.08 E-value=0.016 Score=56.90 Aligned_cols=160 Identities=12% Similarity=-0.071 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHH--HH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYG--CL 147 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~--~l 147 (352)
..|..|...|+...+...|...|+...+-. .-|......+...|+...+++.|..+.-...+ ..| ....+| -.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~q---ka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQ---KAPAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhh---hchHHHHHhhhhhc
Confidence 467888888887778888888888877642 22455677788888888888888887333322 122 122222 23
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHH
Q 048142 148 VYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKK 225 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 225 (352)
.-.|-+.++...|..-|+.. ...| |...|..+..+|...|.+..|.++|.+.....|.+...--...-.-+..|++.+
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 33456677778888777765 4444 678888899999999999999999988877777654333333444567788888
Q ss_pred HHHHHHHHH
Q 048142 226 VKRIRELMA 234 (352)
Q Consensus 226 a~~~~~~m~ 234 (352)
|...++...
T Consensus 649 ald~l~~ii 657 (1238)
T KOG1127|consen 649 ALDALGLII 657 (1238)
T ss_pred HHHHHHHHH
Confidence 888777664
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.99 E-value=0.038 Score=48.09 Aligned_cols=201 Identities=11% Similarity=0.013 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC
Q 048142 27 VTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI----RGVK 102 (352)
Q Consensus 27 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~ 102 (352)
..|......|-..+++++|.+.|.+....-...+... .-...|......|.+. ++++|++.+++..+ .| .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~----~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~ 109 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKF----EAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-R 109 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HH----HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-c
Confidence 4567777788888899999888887654221111000 2223466666666555 99999999988764 33 2
Q ss_pred CC--HhHHHHHHHHHhcc-CCHHHHHHHHHHhhHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhCC-------
Q 048142 103 PD--AITFVGVLVACSHA-GLVDERISHFNLMSEKYGIRPS----IEHYGCLVYILGRAGRIAKAEELIKNMP------- 168 (352)
Q Consensus 103 p~--~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~------- 168 (352)
|+ ...+..+...|-.. |++++|...|++...-+.-..+ ..++..+...+.+.|++++|.++|++..
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 33 33577788888888 9999999999988764332222 3456677788999999999999999861
Q ss_pred -CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CcchHHHHHHHHhh--cCChHHHHHHHHHH
Q 048142 169 -MALDHF-VLGGLLGACRIHDNLEAAERAAQQLLELLPD-----NGGSYVILSNRYSS--SRKWKKVKRIRELM 233 (352)
Q Consensus 169 -~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~li~~~~~--~g~~~~a~~~~~~m 233 (352)
.+.++. .|-..+-.+...||+..|.+.+++....+|. .......|+.+|-. ...++++..-|+.+
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 122332 2333344666789999999999998776542 12344566666632 23345555555433
No 186
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.94 E-value=0.12 Score=39.71 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=73.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 048142 30 VSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFV 109 (352)
Q Consensus 30 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 109 (352)
..++..+...+.......+++.+...+. .+...+|.+|..|++.+ .++.++.+.. .++.+...
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~----------~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~ 73 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS----------ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIE 73 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc----------cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHH
Confidence 4556666666777777777777776652 34456777777777653 3444455442 12344445
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 048142 110 GVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA-GRIAKAEELIKNMPMALDHFVLGGLLGACR 184 (352)
Q Consensus 110 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 184 (352)
.++..|.+.+.++++..++..+.. |...++.+... ++++.|.+++.+-. +...|..++..+.
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 567777777777777776666532 22233333333 66777777766532 4556666665554
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.94 E-value=0.098 Score=38.88 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=75.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---H-h
Q 048142 31 SLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD---A-I 106 (352)
Q Consensus 31 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~-~ 106 (352)
.+..++-..|+.++|..+|++....|..... -...+-.+.+.|...|++++|+.+|++.... .|+ . .
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-------~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~ 76 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGAD-------RRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAA 76 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHH
Confidence 3455677899999999999999998876321 1235667778899999999999999998875 243 1 1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHH
Q 048142 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILG 152 (352)
Q Consensus 107 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 152 (352)
....+..++...|+.++|...+-..... +..-|.-=|..|+
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~la~-----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEALAE-----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 2222334677889999999887665542 3335555555554
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0044 Score=41.51 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 181 GACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
..+.+.+++++|.+.++.+....|.++..|......+.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456777888888888888888788888888888888888888888888888776544
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.021 Score=48.75 Aligned_cols=102 Identities=19% Similarity=0.110 Sum_probs=82.2
Q ss_pred CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCcchHH
Q 048142 138 RP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMAL-DHFVLGGLLGACR---IHDNLEAAERAAQQLLELLPDNGGSYV 211 (352)
Q Consensus 138 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (352)
.| |...|-.|...|.+.|+++.|..-|.+. ...| ++..+..+..++. ......++..+|+++...+|.|+.+-.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 44 8899999999999999999999999887 3333 3444444444432 333467899999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 212 ILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 212 ~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
.|...+...|++.+|...|+.|.+..-.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999876654
No 190
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.92 E-value=0.25 Score=43.18 Aligned_cols=194 Identities=15% Similarity=0.098 Sum_probs=136.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHH---HHHHHhcCChHHHHHHHHHHHHcCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTAL---IVVLAMCGQGNKALEYFYEMQIRGV 101 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~ 101 (352)
+..-..-+-+.+...|++..|+.-|...++.+. ..|-++ ...|...|+...|+.=|.+..+ .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-------------~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--l 101 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-------------NNYQAIFRRATVYLAMGKSKAALQDLSRVLE--L 101 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------------hhHHHHHHHHHHHhhhcCCccchhhHHHHHh--c
Confidence 344445566777778888888888888776432 234444 3567777888888888888777 6
Q ss_pred CCCHhHH-HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--------------hhHHH--HHHHHHHHcCCHHHHHHHH
Q 048142 102 KPDAITF-VGVLVACSHAGLVDERISHFNLMSEKYGIRPS--------------IEHYG--CLVYILGRAGRIAKAEELI 164 (352)
Q Consensus 102 ~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~--------------~~~~~--~li~~~~~~g~~~~A~~~~ 164 (352)
+||-..- ..--..+.+.|.++.|..=|+.+.+. .|+ ...++ ..+..+.-.|+...|+...
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 7885432 22334567889999999999888763 231 11111 1223344578888888888
Q ss_pred HhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 165 KNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 165 ~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
..+ .+.| |...|..=..+|...|++..|+.=++...+...++..++--+...+...|+.+.++...++-.+.
T Consensus 179 ~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 179 THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 776 4444 66677777788999999999998888888887888888888888889999999998887776553
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.91 E-value=0.0071 Score=39.97 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC-CHHHHHHHHHHhh
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG-LVDERISHFNLMS 132 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~ 132 (352)
..|..+...+...|++++|+..|++..+.. +-+...|..+-.++...| ++++|+..+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444455555555555555444431 112334444444444444 3455554444443
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.82 E-value=0.17 Score=44.67 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCC
Q 048142 143 HYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 143 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 222 (352)
+.+.-|.-+...|+...|.++..+..+ ||..-|-..+.+++..++|++-.++... ...+.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCC
Confidence 344445556667777777777777764 6777777777788877777766665432 2344677777777777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHH
Q 048142 223 WKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEE 275 (352)
Q Consensus 223 ~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 275 (352)
..+|..+...+.. ..-+..|.+.|.+.+|.+......+.
T Consensus 253 ~~eA~~yI~k~~~--------------~~rv~~y~~~~~~~~A~~~A~~~kd~ 291 (319)
T PF04840_consen 253 KKEASKYIPKIPD--------------EERVEMYLKCGDYKEAAQEAFKEKDI 291 (319)
T ss_pred HHHHHHHHHhCCh--------------HHHHHHHHHCCCHHHHHHHHHHcCCH
Confidence 7777777776221 12344466777777776665444443
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.82 E-value=0.012 Score=45.60 Aligned_cols=72 Identities=21% Similarity=0.201 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhH----hcCCCCChhHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSE----KYGIRPSIEHY 144 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~~ 144 (352)
....++..+...|++++|+++.+.+... -+-|...|..+|.++...|+..+|.++|+.+.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 5566777777788888888888888776 466888888888888888888888888776543 35788877654
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.79 E-value=0.19 Score=39.97 Aligned_cols=131 Identities=15% Similarity=-0.015 Sum_probs=66.6
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
|++..--.|..++...|++.+|...|++...--..-|....-.+.++....+++..|...++.+.+...---++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 55555555666666666666666666665543344455555566666666666666666666655421000022233344
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 148 VYILGRAGRIAKAEELIKNM-PMALDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
...|...|+..+|+.-|+.. ..-|+...---.-..+.+.|+.+++..-+..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 55566666666666666554 2233332222222233444544444433333
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.78 E-value=0.019 Score=49.13 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchH---HHH
Q 048142 142 EHYGCLVYILGRAGRIAKAEELIKNM-PMALD----HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSY---VIL 213 (352)
Q Consensus 142 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~l 213 (352)
..|..-+..+.+.|++++|...|+.. ...|+ ...+--+...|...|++++|...|+.+.+..|.+.... -.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556678888888888776 22233 23444566777888888888888888877666554443 344
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcC
Q 048142 214 SNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 214 i~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
...+...|+.++|.++|+.+.+.-
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 556777888888888888776543
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.76 E-value=0.28 Score=41.58 Aligned_cols=178 Identities=10% Similarity=-0.009 Sum_probs=97.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITF---VGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
.....+.+.|++++|++.|+++...-..+ ..+- -.+..++-+.+++++|...+++..+.+.-.|+. -|...+.++
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHH
Confidence 34455567899999999999998853222 2222 346678889999999999999999875555543 222333333
Q ss_pred HH--cC---------------C---HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHH
Q 048142 152 GR--AG---------------R---IAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYV 211 (352)
Q Consensus 152 ~~--~g---------------~---~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (352)
+. .+ + ..+|...|+++ +.-|-...-.++|...+..+..... ..--
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l------------i~~yP~S~ya~~A~~rl~~l~~~la---~~e~ 179 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL------------VRGYPNSQYTTDATKRLVFLKDRLA---KYEL 179 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH------------HHHCcCChhHHHHHHHHHHHHHHHH---HHHH
Confidence 21 11 1 22344444444 2222222334444444443332110 1112
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhc
Q 048142 212 ILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFD 271 (352)
Q Consensus 212 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 271 (352)
.+...|.+.|.+..|..=++.+.+.= |+....--.+..+...+...|..+.+.++...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Y--p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDY--PDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45556777777777777777776532 22111111122344557777777777665543
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.14 Score=42.99 Aligned_cols=132 Identities=14% Similarity=0.024 Sum_probs=97.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCcHHHHH-----HH
Q 048142 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM---PMALDHFVLG-----GL 179 (352)
Q Consensus 108 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~-----~l 179 (352)
.++++..+...|.+.-....+++..++ .-+.++.....|.+.-.+.|+.+.|...|++. .-+.|..+.+ +.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 456677777788888888889888875 54557888888888888999999999999855 1122333333 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 180 LGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
...+.-.+++-.|.+.+.+....++.|+..-|+=.-...-.|+..+|.+..+.|...-..|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3456667788889999999988888887776654444445789999999999998765443
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.67 E-value=0.064 Score=46.70 Aligned_cols=162 Identities=15% Similarity=0.041 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcC--CCCC--hhH
Q 048142 73 LTALIVVLAMCGQGNKALEYFYEMQIR----GVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYG--IRPS--IEH 143 (352)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g--~~p~--~~~ 143 (352)
|......|-..+++++|.+.|.+..+. +-..+ ...|.....+|.+. ++++|...+++...-+- -.|+ ...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344445555666677776666665321 11111 12344444444444 77777777666554221 1121 335
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHhC-------CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc------
Q 048142 144 YGCLVYILGRA-GRIAKAEELIKNM-------PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG------ 207 (352)
Q Consensus 144 ~~~li~~~~~~-g~~~~A~~~~~~m-------~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------ 207 (352)
+..+...|... |++++|.+.|++. + .+. ..++..+...+.+.|++++|.++|+++......+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 55666677777 8999988888876 2 222 45566777889999999999999999876422211
Q ss_pred -chHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 208 -GSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 208 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
..|...+-.+...||...|.+.+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12333444566789999999999988654
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.66 E-value=0.022 Score=50.57 Aligned_cols=236 Identities=17% Similarity=0.109 Sum_probs=149.7
Q ss_pred CccCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHH--HHHc--CC-----CCCccccccC
Q 048142 1 YVEDSACEEALLLFREVQHKGLTGDK----VTMVSLLLACTHLGALEVGMWLHPY--IMKK--NI-----EVDVGLGMAL 67 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~--m~~~--g~-----~~~~~~~~~l 67 (352)
+|+.|+.+..+.+|+...+.|.. |. ..|..|-++|.-.+++++|++++.. .+.+ |- +...-++|++
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 36789999999999999998754 43 3466677788888899999987653 2211 11 1122233333
Q ss_pred ---------------------------CcHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH--
Q 048142 68 ---------------------------KDVMTLTALIVVLAMCGQ--------------------GNKALEYFYEMQI-- 98 (352)
Q Consensus 68 ---------------------------~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~-- 98 (352)
.....+-.|...|...|+ ++.|.++|.+=.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 112233334444544331 2334444433211
Q ss_pred --cCCC-CCHhHHHHHHHHHhccCCHHHHHHHHHHhh---HhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----
Q 048142 99 --RGVK-PDAITFVGVLVACSHAGLVDERISHFNLMS---EKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM---- 167 (352)
Q Consensus 99 --~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~---~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 167 (352)
.|-. .--..|..|-+.|--.|+++.|+..++.-. +.+|-.. ....++.|.+++.-.|+++.|.+.|+..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 011335555566666789999987765432 2344333 4567888899999999999999988764
Q ss_pred ---CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 168 ---PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLEL------LPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 168 ---~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
+.+ ....+.-+|-+.|--..++++|+..+.+-+.. .......|-+|..+|...|..++|+.+.+.-.+..
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 322 23556677888888888899999988874331 23345678899999999999999998877665433
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.58 E-value=0.069 Score=45.77 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-cHHHHHHH
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM----PMAL-DHFVLGGL 179 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~l 179 (352)
..|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ +..| ....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3466666555667899999999999987632211 1356677888899999999999999887 2222 23444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 048142 180 LGACRIHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
...+...|+.+.|...++.+.+..|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6677789999999999999988777654
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.014 Score=39.66 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCCccccccCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKN--IEVDVGLGMALKD-VMTLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
..+|+.+...+...|++++|+..+++..+.. ..++. |+ ..+++.|..+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH------PDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578889999999999999999999987641 22122 43 67899999999999999999999988653
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.50 E-value=0.0079 Score=40.89 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=8.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 048142 145 GCLVYILGRAGRIAKAEELIK 165 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~ 165 (352)
+.+...|...|++++|++.|+
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~ 29 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYE 29 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 333334444444444444333
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.48 E-value=0.13 Score=45.48 Aligned_cols=110 Identities=19% Similarity=0.089 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
+-+.-|.-+...|+...|.++-.+.+ .||-.-|-..+.+++..++|++-..+... .-++..|-..+.++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 34455666677888888888876653 46888888999999999999987765432 12567888999999
Q ss_pred HHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048142 152 GRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQL 199 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (352)
.+.|+..+|..++.+++. ..-+..|.+.|++.+|.+...+.
T Consensus 248 ~~~~~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999999988532 44566778899999887765544
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.45 E-value=0.4 Score=39.46 Aligned_cols=174 Identities=11% Similarity=0.036 Sum_probs=96.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 048142 30 VSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFV 109 (352)
Q Consensus 30 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 109 (352)
-.....+...|++++|...|+.+........ --....-.++.++.+.|++++|...|++..+.--.-....+.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSP-------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 3344455678888888888888887643221 122344566788888888888888888887642111122233
Q ss_pred HHHHHHhccCC-------------HHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHH
Q 048142 110 GVLVACSHAGL-------------VDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVL 176 (352)
Q Consensus 110 ~ll~~~~~~g~-------------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 176 (352)
..+.+.+.... ..+|.. .+..++.-|=.+....+|...+..+....-..-
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~----------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e- 144 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIE----------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE- 144 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHH----------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHH----------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH-
Confidence 33333322111 122222 333444444455555555555544421111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcch---HHHHHHHHhhcCChHHHH
Q 048142 177 GGLLGACRIHDNLEAAERAAQQLLELLPDNGGS---YVILSNRYSSSRKWKKVK 227 (352)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~ 227 (352)
-.+..-|.+.|.+..|..-++.+.+..|.+... ...++.+|.+.|..+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 124556888999999999999998887766543 456778888888887544
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.49 Score=39.87 Aligned_cols=135 Identities=7% Similarity=-0.013 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH-
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY- 149 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~- 149 (352)
..-++++..+.-.|.+.-.+.++++..+..-+-++.-...|.+.--+.|+.+.|...|++..+. .-..|..+.+.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3557788888888999999999999998766667877888888888999999999999988875 44445445544443
Q ss_pred ----HHHHcCCHHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 150 ----ILGRAGRIAKAEELIKNMPMA--LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 150 ----~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
.|.-..++.+|...|.++... .|++.-|+-.-+..-.|+...|.+..+.+....|.-
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 355577899999999888322 345555666656666789999999999998876643
No 206
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.028 Score=51.46 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=63.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHcCC
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRAGR 156 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~ 156 (352)
++.+..|+++.|+.+|.+.... -++|.+-|+.=..+|++.|++++|.+=-.+-. .+.|+ +..|+-...++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML-SPTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc-CCCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhccc
Confidence 4455677777777777776664 23466667777777777777777765333332 44553 5667777777777777
Q ss_pred HHHHHHHHHhC-CCCCc-HHHHHHHHHHH
Q 048142 157 IAKAEELIKNM-PMALD-HFVLGGLLGAC 183 (352)
Q Consensus 157 ~~~A~~~~~~m-~~~p~-~~~~~~li~~~ 183 (352)
+++|..-|.+- ...|+ ...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 77777777653 33444 44555555554
No 207
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.27 E-value=0.048 Score=46.12 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcC-------------
Q 048142 23 TGDKVTMVSLLLACTHL-----GALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCG------------- 84 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g------------- 84 (352)
+.|..+|...+..+... +.++-....++.|.+.|++ +|..+|+.||+.+=+..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVe---------rDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVE---------RDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcch---------hhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 45777888888777543 4667777778889999999 88899999998876532
Q ss_pred ---ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 048142 85 ---QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGL 120 (352)
Q Consensus 85 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 120 (352)
+-+-+++++++|...|+.||-.+-..|++++.+.+-
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223355666666666666666666666666655443
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.26 E-value=0.04 Score=36.70 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=30.4
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 35 ACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 35 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
.+.+.++++.|.++++.+.+.+. .+...|......+.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p----------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP----------DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc----------ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555666666666666655432 2334455555556666666666666666554
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=96.24 E-value=0.19 Score=39.31 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=62.2
Q ss_pred HHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHH
Q 048142 151 LGRAGRIAKAEELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKR 228 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 228 (352)
+-..|++++|..+|.-+ -.. -+..-|..|..++-..+++++|+..|.......+.|+..+-.....|...|+.+.|..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 34578888888888776 111 2344566677777778888888888888766666777777777788888888888888
Q ss_pred HHHHHHh
Q 048142 229 IRELMAE 235 (352)
Q Consensus 229 ~~~~m~~ 235 (352)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 8887766
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.17 E-value=0.16 Score=45.88 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhH-HHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRG-VKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEH-YGCLV 148 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~-~~~li 148 (352)
..|.+.|+...+..-++.|..+|-+..+.| +.|+.+.++++|..++ .|+...|..+|+.=... -||... -+-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 467777877777777888888888887777 6677777887776655 45667777777664442 233333 34456
Q ss_pred HHHHHcCCHHHHHHHHHhC--CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 048142 149 YILGRAGRIAKAEELIKNM--PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLPD 205 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (352)
..+.+-++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.+..|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 6677778888888888754 22223 567888888888888888887777777666553
No 211
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.14 E-value=0.51 Score=43.40 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=53.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCc--HHHHHHHHHH
Q 048142 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPM--ALD--HFVLGGLLGA 182 (352)
Q Consensus 107 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~--~~~~~~li~~ 182 (352)
+-.-+..++-+.|+.++|.+.+++|.+.....-.......|+.+|...+.+.++..++.+-.. -|. ...|+..+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566667788999999999999987532222455677889999999999999999887731 132 4566665543
Q ss_pred H
Q 048142 183 C 183 (352)
Q Consensus 183 ~ 183 (352)
.
T Consensus 341 a 341 (539)
T PF04184_consen 341 A 341 (539)
T ss_pred H
Confidence 3
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.04 E-value=1.1 Score=40.36 Aligned_cols=162 Identities=10% Similarity=0.004 Sum_probs=103.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-C-CC-CHhHHHHHHHHHhc---cCCHHHHHHHHHHhhHhcCCCCChhHHHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRG-V-KP-DAITFVGVLVACSH---AGLVDERISHFNLMSEKYGIRPSIEHYGCLV 148 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p-~~~t~~~ll~~~~~---~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 148 (352)
.|+-+|....+++..+++.+.|...- + .+ ....-....-++.+ .|+.++|.+++..+... .-.+++.+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 45556999999999999999998641 1 11 11111233445556 89999999999996654 6677888888887
Q ss_pred HHHHH---------cCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCC----HHHHHHHH---HH-HH-Hh---CCCC
Q 048142 149 YILGR---------AGRIAKAEELIKNM-PMALDHFVLGGLLGACRIHDN----LEAAERAA---QQ-LL-EL---LPDN 206 (352)
Q Consensus 149 ~~~~~---------~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~----~~~a~~~~---~~-~~-~~---~~~~ 206 (352)
..|-. ....++|...|.+. ..+||..+--++...+...|. ..+..++- .. +. ++ ...+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 77653 12467788888776 445553322222222222332 12222222 11 11 11 2335
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 207 GGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
-.-+.++..++.-.|+.+.|.+..++|....
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 5667799999999999999999999998764
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=96.04 E-value=0.12 Score=40.26 Aligned_cols=87 Identities=13% Similarity=-0.024 Sum_probs=47.4
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 048142 36 CTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVAC 115 (352)
Q Consensus 36 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 115 (352)
+-..|++++|..+|..+...+. -+..-|..|..++-..+++++|+..|...-..+. -|+..+--.-.++
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~----------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~ 115 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF----------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQ 115 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHH
Confidence 3456666666666666655443 3334455555666666666666666655544322 2333344445555
Q ss_pred hccCCHHHHHHHHHHhhH
Q 048142 116 SHAGLVDERISHFNLMSE 133 (352)
Q Consensus 116 ~~~g~~~~a~~~~~~m~~ 133 (352)
...|+.+.|...|.....
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 566666666666655554
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.13 Score=49.00 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=28.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
+....-.+.+++.+.|.-++|.+.|-+-+. | ..-+..|...++|.+|.++.++
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556666666666666666554431 2 1233445555566666655544
No 215
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.99 E-value=0.44 Score=41.63 Aligned_cols=133 Identities=15% Similarity=0.244 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 7 CEEALLLFREVQHKGLTGDKVTMVSLLLACTH--LG----ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 7 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
+++.+++++.|.+.|+.-+..+|.+....... .. ....|..+|+.|++.-.-.+. ++-..+..|+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs------~~D~~~a~lLA~- 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS------PEDYPFAALLAM- 150 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC------ccchhHHHHHhc-
Confidence 46677899999999999988888764443332 22 346799999999986543333 666778777765
Q ss_pred HhcCC----hHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcc-CC--HHHHHHHHHHhhHhcCCCCChhHHHHHH
Q 048142 81 AMCGQ----GNKALEYFYEMQIRGVKPDAI-TFVGVLVACSHA-GL--VDERISHFNLMSEKYGIRPSIEHYGCLV 148 (352)
Q Consensus 81 ~~~g~----~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~-g~--~~~a~~~~~~m~~~~g~~p~~~~~~~li 148 (352)
..++ .+.+..+|+.+.+.|+..+.. -+.+-+-+++.. .. ...+.++++.+.+. |+++....|..+.
T Consensus 151 -~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 151 -TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred -ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 3333 456778888888888776543 233333344332 22 44788899999987 9999888876653
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.97 E-value=0.05 Score=49.45 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=75.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNM-PMALDH----FVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 214 (352)
+...++.+..+|.+.|++++|+..|++. ...|+. .+|.++..+|...|+.++|+..+++..+...+ .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 5788999999999999999999999985 667774 46999999999999999999999999885222 233221
Q ss_pred H--HHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 215 N--RYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 215 ~--~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
. .+....+.++..++++.+...|...
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 1 1223345567888888888888754
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.89 E-value=0.023 Score=33.73 Aligned_cols=40 Identities=28% Similarity=0.289 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Q 048142 175 VLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214 (352)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 214 (352)
+|..+...|...|++++|++++++..+..|.|+..+..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 5677888888899999999999998888888887776554
No 218
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.82 E-value=0.6 Score=35.70 Aligned_cols=128 Identities=10% Similarity=0.023 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
....+|..+.+.+.......+++.+...+. .+...++.++..|++.+ .++....+.. .++.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 345678888888899999999999988763 57778889999998764 3444444442 12333444578888
Q ss_pred HHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhh
Q 048142 152 GRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIH-DNLEAAERAAQQLLELLPDNGGSYVILSNRYSS 219 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 219 (352)
.+.+.++++.-++.+++...+ .+..+... ++++.|.+.+.+- .++..|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~~~~------Al~~~l~~~~d~~~a~~~~~~~-----~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNFKD------AIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcCHHH------HHHHHHHcccCHHHHHHHHHhC-----CCHHHHHHHHHHHHc
Confidence 888999999999998874322 22223333 7888888887752 355677777776654
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.80 E-value=0.87 Score=37.43 Aligned_cols=162 Identities=16% Similarity=0.122 Sum_probs=92.4
Q ss_pred cCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGL--TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
+.|++.+|.+.|+.+...-. +-.....-.+..++-+.|+++.|...++...+.-... |. ..+...+.+.
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~--------~~-~~~A~Y~~g~ 87 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS--------PK-ADYALYMLGL 87 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------TT-HHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------cc-hhhHHHHHHH
Confidence 57999999999999987521 1124556678889999999999999999988754331 21 1233333332
Q ss_pred HhcC-------------ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 81 AMCG-------------QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 81 ~~~g-------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
+.-. ...+|+.. |..++.-|=.....++|...+..+... =...--.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~-----la~~e~~i 147 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR-----LAEHELYI 147 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 2111 12233333 444555555556666666655555432 01111235
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCc-HHHHHHHHHHHHhcCCHHHHH
Q 048142 148 VYILGRAGRIAKAEELIKNM----PMALD-HFVLGGLLGACRIHDNLEAAE 193 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~li~~~~~~g~~~~a~ 193 (352)
...|.+.|.+..|..-++.+ |..+. ....-.++.++...|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 66688888888887777766 32222 345566777777777776443
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.80 E-value=0.27 Score=44.55 Aligned_cols=131 Identities=15% Similarity=0.060 Sum_probs=102.1
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCcHHHH-HHHH
Q 048142 104 DAITFVGVLVACSHAGLVDERISHFNLMSEKYG-IRPSIEHYGCLVYILGRAGRIAKAEELIKN-MPMALDHFVL-GGLL 180 (352)
Q Consensus 104 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~-~~li 180 (352)
=...|...+++-.+..-++.|..+|-+..+. | +.+++..++++|..++ .|+..-|..+|+- |..-||...| +-.+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHH
Confidence 3467888999999999999999999999986 7 6789999999999887 5678889999975 3334676555 4456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 181 GACRIHDNLEAAERAAQQLLELLPDN--GGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
.-+...++-..|..+|+...+....+ ...|..+|+.=++-|++..+..+-+.|.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 66778889999999999765433223 468999999989999998887776666543
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.77 E-value=0.14 Score=46.65 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI----EHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
.+...++.+-.+|.+.|++++|...|++..+ +.|+. .+|..+..+|...|++++|++.+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567899999999999999999999999875 46763 35899999999999999999999987
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.74 E-value=0.59 Score=35.03 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=84.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKA 160 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 160 (352)
.-.|..++..++..+...+. +..-+|-+|--....-+-+...++++.+-+.+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34677778888887776542 44456656655555556666666666654432222 23444444
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 161 EELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 161 ~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
...+-.++ .+..-...-+..+...|.-|.-.+++..+.+...+++.....+..+|.+.|+..++-+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444432 233444556778888999999999999987666778888899999999999999999999999998875
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.70 E-value=0.23 Score=47.29 Aligned_cols=260 Identities=12% Similarity=0.042 Sum_probs=146.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMK-KNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGV 101 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 101 (352)
.|.+..|..|.......-.++.|+..|-+... .|++.=..+... .+...-.+=|.+| -|++++|.++|-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i-~s~~~q~aei~~~--~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTI-HSKEQQRAEISAF--YGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhh-hhHHHHhHhHhhh--hcchhHhhhhhhccchhh-
Confidence 56777787777666666666666666544332 122100000000 1111122223333 477888888887776542
Q ss_pred CCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHH
Q 048142 102 KPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP----SIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLG 177 (352)
Q Consensus 102 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 177 (352)
..|...-+.|++-...++++.= |-.. -...++.+...++....|++|.+.+..-+.. .
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------e 826 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------E 826 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------H
Confidence 2445566677776666554331 2121 1456777778888888888888888776532 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhh
Q 048142 178 GLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFV 257 (352)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~ 257 (352)
..+.++....++++-+.+.+ ..|.+....-.+..++.+.|.-++|.+.|-+ .+.+ .+.++...
T Consensus 827 ~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p----------kaAv~tCv 889 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLAR----TLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP----------KAAVHTCV 889 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc----------HHHHHHHH
Confidence 24455555444544444333 3455666777788888888888888876643 3332 23445555
Q ss_pred hcCcccCchhhhhcCCHHHHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEcccccccCccchhHHHhhhhcce
Q 048142 258 KAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNLRVCNDCHTATNIISKVYNRE 329 (352)
Q Consensus 258 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~~~~a~~~~~~~~~~~ 329 (352)
....+.+|.++.....-......+..+. ..++...... .-|...|++|..-+|.+|+++|.+|+
T Consensus 890 ~LnQW~~avelaq~~~l~qv~tliak~a------aqll~~~~~~--eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRFQLPQVQTLIAKQA------AQLLADANHM--EAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHH------HHHHhhcchH--HHHHHhhhcccchhHHHHHHHHhHHH
Confidence 6666666666655443332333332222 1222221111 23456788999999999999999884
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.55 Score=40.31 Aligned_cols=111 Identities=23% Similarity=0.100 Sum_probs=70.7
Q ss_pred CCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc-C--CHHHHHHHHHhC-CCCCc-HHHH
Q 048142 102 KPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA-G--RIAKAEELIKNM-PMALD-HFVL 176 (352)
Q Consensus 102 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g--~~~~A~~~~~~m-~~~p~-~~~~ 176 (352)
+-|...|-.|-.+|...|+.+.|..-|....+-.|- ++..+..+..++... | ...++.++|+++ ...|+ +.+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 346677888888888888888888888777653222 444455555544332 2 244677777776 44454 4444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 048142 177 GGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSN 215 (352)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 215 (352)
..|...+...|++.+|...++.|.+..|++. .+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHHH
Confidence 4455677888888888888888888777664 4444444
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.67 E-value=0.85 Score=36.42 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=96.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC-CCChhHHHHHHHHHHHc
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGI-RPSIEHYGCLVYILGRA 154 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~ 154 (352)
+..+..+.=|++...+-..+-. ...|+...--.|..+....|+..+|...|++... |+ .-|....-.+.++....
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 62 LLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhh
Confidence 3344444444544443332222 2567777777788888888999899888888875 54 44677777777777778
Q ss_pred CCHHHHHHHHHhC------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHH
Q 048142 155 GRIAKAEELIKNM------PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKR 228 (352)
Q Consensus 155 g~~~~A~~~~~~m------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 228 (352)
+++.+|...++++ +-.|| +.-.+...+...|....|+..|+...+--| +...-......+++.|+.+++..
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 8888888888877 12234 333456778888888888888888776433 22222223345567777766655
Q ss_pred HHHHH
Q 048142 229 IRELM 233 (352)
Q Consensus 229 ~~~~m 233 (352)
-+.++
T Consensus 215 q~~~v 219 (251)
T COG4700 215 QYVAV 219 (251)
T ss_pred HHHHH
Confidence 44444
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.51 E-value=1.8 Score=41.25 Aligned_cols=202 Identities=13% Similarity=0.039 Sum_probs=111.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHH-----HHHHHHhcCChH
Q 048142 13 LFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTA-----LIVVLAMCGQGN 87 (352)
Q Consensus 13 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-----li~~~~~~g~~~ 87 (352)
=+++|++.|-.|+... +...|+-.|.+.+|-++|.+ .|.+. +-...|+- +..-|...|..+
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~en--------RAlEmyTDlRMFD~aQE~~~~g~~~ 687 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHEN--------RALEMYTDLRMFDYAQEFLGSGDPK 687 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCchh--------hHHHHHHHHHHHHHHHHHhhcCChH
Confidence 3456666676676643 33445667777777766643 33321 11122221 123344444444
Q ss_pred HHHHHHHHHHHc--C-CCCCHhHHHHHHHHHhccCCHHHHHHHHHH-----hhHhcCCCC---ChhHHHHHHHHHHHcCC
Q 048142 88 KALEYFYEMQIR--G-VKPDAITFVGVLVACSHAGLVDERISHFNL-----MSEKYGIRP---SIEHYGCLVYILGRAGR 156 (352)
Q Consensus 88 ~A~~~~~~m~~~--g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-----m~~~~g~~p---~~~~~~~li~~~~~~g~ 156 (352)
+-..+.++--+. . -+|.. ....+..+|+.++|..+..+ |.-+.+-.. +..+...+..-+.+...
T Consensus 688 eKKmL~RKRA~WAr~~kePka-----AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 688 EKKMLIRKRADWARNIKEPKA-----AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred HHHHHHHHHHHHhhhcCCcHH-----HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence 443333322110 1 12322 23344556776666554321 110001111 33444444555566777
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc----------chHHHHHHHHhhcCChHHH
Q 048142 157 IAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG----------GSYVILSNRYSSSRKWKKV 226 (352)
Q Consensus 157 ~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~a 226 (352)
+.-|-++|.+|+.. .+++......++|++|..+.++..+..+.-- .-|.-.-.+|.++|+-.+|
T Consensus 763 ~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred cchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 88899999999733 3466677888999999999888766433222 2234455789999999999
Q ss_pred HHHHHHHHhcCCC
Q 048142 227 KRIRELMAERNIK 239 (352)
Q Consensus 227 ~~~~~~m~~~g~~ 239 (352)
.++++++....+.
T Consensus 837 ~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 837 VQVLEQLTNNAVA 849 (1081)
T ss_pred HHHHHHhhhhhhh
Confidence 9999998765544
No 227
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.37 E-value=0.016 Score=32.28 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=28.2
Q ss_pred HHHHHHhCCCCcchHHHHHHHHhhcCChHHHHH
Q 048142 196 AQQLLELLPDNGGSYVILSNRYSSSRKWKKVKR 228 (352)
Q Consensus 196 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 228 (352)
|++.++..|.++..|..+...|...|++++|.+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 566778889999999999999999999998863
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.35 E-value=1.2 Score=36.10 Aligned_cols=219 Identities=22% Similarity=0.128 Sum_probs=143.1
Q ss_pred hhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCccccccCCcHHHHHHHHHHHHhcC
Q 048142 7 CEEALLLFREVQHKGLT-GDKVTMVSLLLACTHLGALEVGMWLHPYIMKK-NIEVDVGLGMALKDVMTLTALIVVLAMCG 84 (352)
Q Consensus 7 ~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~li~~~~~~g 84 (352)
...+...+......... .....+......+...+.+..+...+...... ... .....+..+...+...+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP---------NLAEALLNLGLLLEALG 109 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc---------chHHHHHHHHHHHHHHh
Confidence 34444555444443221 12566677777778888888888887777653 111 44456777777777888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHH-HHhccCCHHHHHHHHHHhhHhcCC--CCChhHHHHHHHHHHHcCCHHHHH
Q 048142 85 QGNKALEYFYEMQIRGVKPDAITFVGVLV-ACSHAGLVDERISHFNLMSEKYGI--RPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~m~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
++..+.+.+.........+. ........ .+...|+++.|...+...... .- ......+......+...++.++|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 110 KYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 88888888888877543331 22222223 678888999999888887432 21 123344444444566788888888
Q ss_pred HHHHhC-CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 162 ELIKNM-PMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 162 ~~~~~m-~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
..+... ...++ ...+..+-..+...++.+.|...+.......+.....+..+...+...+.++++...+......
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 188 ELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888876 33333 5677777788888888888888888888776664445555555555667788888777776543
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.22 E-value=0.23 Score=42.21 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=77.5
Q ss_pred CcHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC----------------CHHHHHH
Q 048142 68 KDVMTLTALIVVLAMC-----GQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG----------------LVDERIS 126 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------------~~~~a~~ 126 (352)
+|-.+|-+++..+... +.++=....++.|.+-|+.-|..+|+.||+.+=+.. .-+-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 5667888888887643 567777778899999999999999999999987643 2345789
Q ss_pred HHHHhhHhcCCCCChhHHHHHHHHHHHcCCH-HHHHHHHHhC
Q 048142 127 HFNLMSEKYGIRPSIEHYGCLVYILGRAGRI-AKAEELIKNM 167 (352)
Q Consensus 127 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 167 (352)
++++|.. +|+.||..+-..|++++++.+.. .+..++.--|
T Consensus 145 vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 145 VLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 9999988 59999999999999999987763 3344443333
No 230
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.20 E-value=0.00081 Score=52.02 Aligned_cols=127 Identities=19% Similarity=0.182 Sum_probs=68.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 048142 32 LLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGV 111 (352)
Q Consensus 32 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 111 (352)
++..+.+.+.+.....+++.+...+.. .+....+.++..|++.++.++.+++++. .+.+-...+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~---------~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~ 76 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE---------NNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKA 76 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC----------SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc---------cCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHH
Confidence 455556666666666777777665543 3455677777777777666666666651 122333456
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 048142 112 LVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHD 187 (352)
Q Consensus 112 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 187 (352)
+..|.+.|.++++.-++.++..- .-. +..+...+++++|.+++.+. ++...|..++..|...+
T Consensus 77 ~~~c~~~~l~~~a~~Ly~~~~~~-~~a---------l~i~~~~~~~~~a~e~~~~~---~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 77 LRLCEKHGLYEEAVYLYSKLGNH-DEA---------LEILHKLKDYEEAIEYAKKV---DDPELWEQLLKYCLDSK 139 (143)
T ss_dssp HHHHHTTTSHHHHHHHHHCCTTH-TTC---------SSTSSSTHCSCCCTTTGGGC---SSSHHHHHHHHHHCTST
T ss_pred HHHHHhcchHHHHHHHHHHcccH-HHH---------HHHHHHHccHHHHHHHHHhc---CcHHHHHHHHHHHHhcC
Confidence 66666666666666655554321 111 11122334555555444444 24666777776665554
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.10 E-value=0.33 Score=44.95 Aligned_cols=133 Identities=16% Similarity=0.107 Sum_probs=87.0
Q ss_pred HHhcCChHHHHHHHHH-HHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHH
Q 048142 80 LAMCGQGNKALEYFYE-MQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 158 (352)
..-.++++++.++... -.-..++ ..-.+.++..+-+.|..+.|+++...-.. -...-.+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 3457888888777751 1111122 33467888888889999999876544332 245566889999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 159 KAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 159 ~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
.|.++.++.. +...|..|.......|+++.|++.|++.. -|..|+-.|.-.|+.+.-.++-+....+|-
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9998877664 77899999999999999999999988764 356677777888888777777776666654
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.09 E-value=0.15 Score=48.11 Aligned_cols=266 Identities=10% Similarity=0.012 Sum_probs=146.8
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc--cccccCCcHHHHHHHHHHHHhcCC--hHHHHHHHHHHH
Q 048142 22 LTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDV--GLGMALKDVMTLTALIVVLAMCGQ--GNKALEYFYEMQ 97 (352)
Q Consensus 22 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~l~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~ 97 (352)
+.|..+.+.+-+..+...|.+++|.++-. .|+..+. .+.+...+...++.-=.+|.+-.+ +-+.+.-+++|+
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k 627 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERK 627 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455556666667778888877754311 1111000 000000233456666677776554 456666778888
Q ss_pred HcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----------
Q 048142 98 IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM---------- 167 (352)
Q Consensus 98 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---------- 167 (352)
+.|-.|+... +...|+-.|++.+|-++|.+- |... --+.+|.....+|.|.+++..-
T Consensus 628 ~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~----G~en------RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 628 KRGETPNDLL---LADVFAYQGKFHEAAKLFKRS----GHEN------RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred hcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc----Cchh------hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 8998899864 445667789999999988764 3221 1233344444444444443322
Q ss_pred --------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH----------HHHhCCCCcchHHHHHHHHhhcCChHHHHHH
Q 048142 168 --------PMALDHFVLGGLLGACRIHDNLEAAERAAQQ----------LLELLPDNGGSYVILSNRYSSSRKWKKVKRI 229 (352)
Q Consensus 168 --------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 229 (352)
-.+|- +-...+.+.|+.++|..+.-. ..+....+..+...+...+.+...+.-|.++
T Consensus 695 KRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 695 KRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred HHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence 01222 122334455665555544221 1112333445566666666777788888999
Q ss_pred HHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhcCCHHHHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEccc
Q 048142 230 RELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFDMDEEEKETALNLHTEKLAITFGLVSPMPGVLIRIIKNL 309 (352)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l 309 (352)
|.+|-+.. .++....+.|++++|..+.+...+ -.......|..-||..-.+ +..-|.+
T Consensus 770 F~k~gD~k-------------siVqlHve~~~W~eAFalAe~hPe-~~~dVy~pyaqwLAE~DrF--------eEAqkAf 827 (1081)
T KOG1538|consen 770 FLKMGDLK-------------SLVQLHVETQRWDEAFALAEKHPE-FKDDVYMPYAQWLAENDRF--------EEAQKAF 827 (1081)
T ss_pred HHHhccHH-------------HHhhheeecccchHhHhhhhhCcc-ccccccchHHHHhhhhhhH--------HHHHHHH
Confidence 98885321 133335577888888877665542 1122222233333322111 1233578
Q ss_pred ccccCccchhHHHhhhhcceEE
Q 048142 310 RVCNDCHTATNIISKVYNRETV 331 (352)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~ 331 (352)
.++|+..||..++.++.+..+.
T Consensus 828 hkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred HHhcchHHHHHHHHHhhhhhhh
Confidence 8899999999999999887553
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.71 Score=41.31 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 218 (352)
..+++.|..+|.+.+++.+|+..-++. ... +|+...--=-.++...|+++.|...|+++++..|.|-.+-+-|+..-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 446777888899999999999887776 333 345544444568888999999999999999999999888888888777
Q ss_pred hcCChHHH-HHHHHHHHh
Q 048142 219 SSRKWKKV-KRIRELMAE 235 (352)
Q Consensus 219 ~~g~~~~a-~~~~~~m~~ 235 (352)
+..+..+. .++|..|-.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 77766554 788888864
No 234
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.92 Score=40.75 Aligned_cols=167 Identities=13% Similarity=0.018 Sum_probs=115.1
Q ss_pred CcHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh--ccCCHHHHHHHHHHhhHhcCCCCChhHH
Q 048142 68 KDVMTLTALI-VVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACS--HAGLVDERISHFNLMSEKYGIRPSIEHY 144 (352)
Q Consensus 68 ~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 144 (352)
|...+|-.|- .++.-.|++++|...--..++.. + ...+...+++.+ -.++.+.|...|++-+ .+.|+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~s 239 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKS 239 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhH
Confidence 4445555553 55667888888888776666532 1 223444555544 3678889999888876 456654332
Q ss_pred HHH-------------HHHHHHcCCHHHHHHHHHhC-C-----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 048142 145 GCL-------------VYILGRAGRIAKAEELIKNM-P-----MALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPD 205 (352)
Q Consensus 145 ~~l-------------i~~~~~~g~~~~A~~~~~~m-~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (352)
-.+ .+-..+.|++.+|.+.+.+. . .+|+...|........+.|+.++|+.-.++..+.++.
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 222 12345789999999999887 3 3455666777777888999999999999998887665
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 048142 206 NGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 240 (352)
-...|..-..++...++|++|.+-+++..+..-.+
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 55566666667788899999999999876554433
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=2.5 Score=36.43 Aligned_cols=143 Identities=12% Similarity=0.023 Sum_probs=75.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHH
Q 048142 79 VLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIA 158 (352)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 158 (352)
.....|++.+|..+|.......-. +...-..+..+|...|+.+.|..++..+..+ --........+-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 344566677777777666654211 2334445666666777777777776666543 11111222223344455555555
Q ss_pred HHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCcchHHHHHHHHhhcCCh
Q 048142 159 KAEELIKNMPMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLE--LLPDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 159 ~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 223 (352)
+..++-.+..-.| |...--.+...+...|+.+.|.+.+-.+.+ ..-.|...-..|+..+.-.|.-
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 4445544443344 344444555666666777766665555433 2333445556666666655533
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=0.46 Score=40.20 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---cchHHH
Q 048142 143 HYGCLVYILGRAGRIAKAEELIKNM-------PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN---GGSYVI 212 (352)
Q Consensus 143 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 212 (352)
.|+.-++.| +.|++.+|..-|... ...|+..-| |..++...|++++|...|..+.+..|.. +...-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 466555443 456677777777665 234555555 7777777788888877777776654433 344555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhc
Q 048142 213 LSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
|.....+.|+.++|..+|+++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666677777778888777777654
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.41 E-value=2.8 Score=39.36 Aligned_cols=165 Identities=17% Similarity=0.052 Sum_probs=80.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC-CCCCccccccCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCC
Q 048142 30 VSLLLACTHLGALEVGMWLHPYIMKKN-IEVDVGLGMALKDVMTLTALIVVLAM----CGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 30 ~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
..+++..+-.|+-+.+++.+.+..+.+ +.... . .--...|...+..++. ..+.+.|.+++..+... -|+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~l--a--~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~ 265 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPL--A--ALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN 265 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHH--H--HHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence 445555566778888888777655422 21000 0 0112334455544433 34566677777776653 455
Q ss_pred HhHHHHH-HHHHhccCCHHHHHHHHHHhhHhc-CC-CCChhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHH
Q 048142 105 AITFVGV-LVACSHAGLVDERISHFNLMSEKY-GI-RPSIEHYGCLVYILGRAGRIAKAEELIKNMP--MALDHFVLGGL 179 (352)
Q Consensus 105 ~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l 179 (352)
..-|... -+.+...|++++|.+.|+...... .. +.....+--+.-.+.-.++|++|.+.|..+. .+-+..+|.-+
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5444322 333445667777777776543210 00 0112223333444555666666666666661 12233334333
Q ss_pred HHH-HHhcCCH-------HHHHHHHHHHH
Q 048142 180 LGA-CRIHDNL-------EAAERAAQQLL 200 (352)
Q Consensus 180 i~~-~~~~g~~-------~~a~~~~~~~~ 200 (352)
..+ +...|+. ++|.++|+++.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 332 2334444 55555555543
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=4.4 Score=39.87 Aligned_cols=139 Identities=13% Similarity=0.042 Sum_probs=76.7
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
+.|++++|...|-+-... +.| ..+|.-|-.......--.+++.+.+.|+ .+...-+.|+.+|.+
T Consensus 380 ~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl----------a~~dhttlLLncYiK 443 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL----------ANSDHTTLLLNCYIK 443 (933)
T ss_pred hcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc----------ccchhHHHHHHHHHH
Confidence 456666666666444332 222 2234445555555555566666666666 344556677777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
.++.++-.++.+.-. .|.- ..-.-..+..|-+.+-.++|..+-.... . ....... .+-..+++++|++
T Consensus 444 lkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~----~--he~vl~i---lle~~~ny~eAl~ 511 (933)
T KOG2114|consen 444 LKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK----K--HEWVLDI---LLEDLHNYEEALR 511 (933)
T ss_pred hcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc----c--CHHHHHH---HHHHhcCHHHHHH
Confidence 777776665554433 2211 0113345666666666666665443332 1 2222222 3445688999999
Q ss_pred HHHhCCC
Q 048142 163 LIKNMPM 169 (352)
Q Consensus 163 ~~~~m~~ 169 (352)
+++.+|.
T Consensus 512 yi~slp~ 518 (933)
T KOG2114|consen 512 YISSLPI 518 (933)
T ss_pred HHhcCCH
Confidence 9988863
No 239
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.26 E-value=0.31 Score=41.85 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHh-----cCCCCC
Q 048142 175 VLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAE-----RNIKKP 241 (352)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~ 241 (352)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|...|+.+.+ .|+.|.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 4455667777788888888888888888888888888888888888888888888887753 677665
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.24 E-value=1.3 Score=33.19 Aligned_cols=88 Identities=18% Similarity=0.097 Sum_probs=63.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhH---HHHHHHHHHHc
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEH---YGCLVYILGRA 154 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---~~~li~~~~~~ 154 (352)
-+++..|+.+.|++.|.+.... .+-....||.-..++.-.|+.++|..=+++..+-.|-. +... |-.-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 3456789999999999988874 44467789999999999999999988888877643433 2222 22223356778
Q ss_pred CCHHHHHHHHHhC
Q 048142 155 GRIAKAEELIKNM 167 (352)
Q Consensus 155 g~~~~A~~~~~~m 167 (352)
|+.++|..=|+..
T Consensus 129 g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 129 GNDDAARADFEAA 141 (175)
T ss_pred CchHHHHHhHHHH
Confidence 8888888877765
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.11 E-value=4.2 Score=36.52 Aligned_cols=220 Identities=14% Similarity=0.081 Sum_probs=113.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVT--MVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA 81 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~ 81 (352)
.|+++.|.+-|+.|... |.... .-.|.-.--+.|+-+.|++.-+..-..-.. -.-.+.+.+...+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~----------l~WA~~AtLe~r~ 199 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ----------LPWAARATLEARC 199 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC----------CchHHHHHHHHHH
Confidence 47888888888888752 22111 122222335667777777766665543322 1246788889999
Q ss_pred hcCChHHHHHHHHHHHHcC-CCCCHhH--HHHHHHHHhc---cCCHHHHHHHHHHhhHhcCCCCChhHHH-HHHHHHHHc
Q 048142 82 MCGQGNKALEYFYEMQIRG-VKPDAIT--FVGVLVACSH---AGLVDERISHFNLMSEKYGIRPSIEHYG-CLVYILGRA 154 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~~~~~---~g~~~~a~~~~~~m~~~~g~~p~~~~~~-~li~~~~~~ 154 (352)
..|+++.|+++.+.-+... +.++..- -..|+.+-.. ..+...|...-.+.. .+.||..--. .-..+|.+.
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d 276 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRD 276 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhc
Confidence 9999999999998776543 4444322 2233332221 123333433322222 3444432211 123456666
Q ss_pred CCHHHHHHHHHhC-CCCCcHHHHHH---------------------------------HHHHHHhcCCHHHHHHHHHHHH
Q 048142 155 GRIAKAEELIKNM-PMALDHFVLGG---------------------------------LLGACRIHDNLEAAERAAQQLL 200 (352)
Q Consensus 155 g~~~~A~~~~~~m-~~~p~~~~~~~---------------------------------li~~~~~~g~~~~a~~~~~~~~ 200 (352)
|++.++-.+++.+ +..|.+..+.. +..+-...|++..|..-.+...
T Consensus 277 ~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 277 GNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred cchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 7777776666666 33444444422 2233333333333333333222
Q ss_pred HhCCCCcchHHHHHHHHh-hcCChHHHHHHHHHHHhcCCCC
Q 048142 201 ELLPDNGGSYVILSNRYS-SSRKWKKVKRIRELMAERNIKK 240 (352)
Q Consensus 201 ~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p 240 (352)
.. .|....|-.|.+.-. ..|+-.++.+.+.+-...--.|
T Consensus 357 r~-~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 357 RE-APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hh-CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 22 233355666655543 3477777777776665544444
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.11 E-value=1.2 Score=34.00 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD---AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
....|+.-...+ +.|++++|.+.|+.+... .+.. ..+--.|+.++.+.+++++|...+++..+-+--.|+ .-|.
T Consensus 10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa 86 (142)
T PF13512_consen 10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYA 86 (142)
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHH
Confidence 333444333333 456677777777766654 2221 233445666666777777777777666654222222 3344
Q ss_pred HHHHHHHH
Q 048142 146 CLVYILGR 153 (352)
Q Consensus 146 ~li~~~~~ 153 (352)
..+.+++.
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 44444443
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.74 Score=41.18 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVY 149 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~ 149 (352)
.+++.|.-+|.+.+++.+|++.-++....+ ++|.-..----.+|...|+++.|+..|+.+.+ +.|+ -..-+.|+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHH
Confidence 367777788888888888888888877752 34555555566777788888888888888874 4664 344444544
Q ss_pred HHHHcCCHHH-HHHHHHhC
Q 048142 150 ILGRAGRIAK-AEELIKNM 167 (352)
Q Consensus 150 ~~~~~g~~~~-A~~~~~~m 167 (352)
+-.+.....+ ..++|..|
T Consensus 334 l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444433 46677766
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.00 E-value=5.5 Score=37.47 Aligned_cols=161 Identities=13% Similarity=0.112 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----hHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCCh
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRG-VKPDA-----ITFVGVLVACSH----AGLVDERISHFNLMSEKYGIRPSI 141 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~ 141 (352)
....+++..+=.||-+.+++++.+-.+.+ +.-.. .+|...+..++. ....+.|.++++.+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 45667777777899999999998876532 22111 234444444443 45778899999999875 5666
Q ss_pred hHHHHH-HHHHHHcCCHHHHHHHHHhCC-CC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Q 048142 142 EHYGCL-VYILGRAGRIAKAEELIKNMP-MA-----LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214 (352)
Q Consensus 142 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 214 (352)
..|.-. .+.+...|++++|.+.|++.- .+ .....+--+.-.+....++++|.+.|..+.+....+..+|..+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 555433 345667899999999999752 11 11223333444567788999999999999886666666666555
Q ss_pred HH-HhhcCCh-------HHHHHHHHHHHh
Q 048142 215 NR-YSSSRKW-------KKVKRIRELMAE 235 (352)
Q Consensus 215 ~~-~~~~g~~-------~~a~~~~~~m~~ 235 (352)
.+ +...|+. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44 4667878 888888887753
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.95 E-value=1 Score=38.14 Aligned_cols=101 Identities=19% Similarity=0.109 Sum_probs=63.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCc-HHHHHHHH
Q 048142 107 TFVGVLVACSHAGLVDERISHFNLMSEKYGIR-PSIEHYGCLVYILGRAGRIAKAEELIKNM----PMALD-HFVLGGLL 180 (352)
Q Consensus 107 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~li 180 (352)
.|+.-+.. .+.|++..|...|....+.|--. -....+--|...+...|++++|..+|..+ |..|- +.+.--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46666544 45566777777777777653211 12334555777777778888877777766 32222 34445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 048142 181 GACRIHDNLEAAERAAQQLLELLPDNGG 208 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (352)
....+.|+.++|-..++++.+..|.+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6667777788888888877776665543
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.93 E-value=2 Score=32.25 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=25.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 109 VGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 109 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
...++++...|+-++-.+++.++.+ .-.+++...-.+..+|.+.|+..+|.+++.+.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3444455555555555555555443 22344444445555555555555555555443
No 247
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.87 E-value=2.1 Score=34.27 Aligned_cols=97 Identities=13% Similarity=-0.010 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH--H
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA--ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG--C 146 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~--~ 146 (352)
..+..+...|++.|+.++|++.|.++.+....|.. ..+-.+|......+++..+.....+.........|...-| .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46888999999999999999999999887555553 3467788888889999999888877765311111222211 1
Q ss_pred HHHH--HHHcCCHHHHHHHHHhC
Q 048142 147 LVYI--LGRAGRIAKAEELIKNM 167 (352)
Q Consensus 147 li~~--~~~~g~~~~A~~~~~~m 167 (352)
...+ +...+++.+|-..|-+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1111 23468899888888766
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.84 E-value=1.1 Score=38.58 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhH----hcCCCCChhHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSE----KYGIRPSIEHYGCL 147 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~~~~l 147 (352)
++..++..+...|+.+.+.+.++++... -+-|...|..++.+|.+.|+...|+..|+.+.+ ..|+.|.+.+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 5667777777777777777777777766 455777777777777777777777777766654 34777777776666
Q ss_pred HHHH
Q 048142 148 VYIL 151 (352)
Q Consensus 148 i~~~ 151 (352)
....
T Consensus 234 ~~~~ 237 (280)
T COG3629 234 EEIL 237 (280)
T ss_pred HHHh
Confidence 5553
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.33 E-value=0.23 Score=27.89 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQ 97 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~ 97 (352)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888888744
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=4.3 Score=34.04 Aligned_cols=218 Identities=11% Similarity=0.042 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 7 CEEALLLFREVQHKGLTGD----KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 7 ~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
..+|.+....-... ..|| ...|-....+|-...++++|..-+.+..+. .+-+...+ .-.-+|...+-..-.
T Consensus 9 i~ea~e~~a~t~~~-wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf---hAAKayEqaamLake 83 (308)
T KOG1585|consen 9 ISEADEMTALTLTR-WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF---HAAKAYEQAAMLAKE 83 (308)
T ss_pred HHHHHHHHHHHhhc-cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH---HHHHHHHHHHHHHHH
Confidence 34444444433322 3444 455666777777888888887766665531 11111000 011123333333333
Q ss_pred cCChHHHHHHHHHHH----HcCCCCCHhHHHH-HHHHHhccCCHHHHHHHHHHhhHhcCC----CCChhHHHHHHHHHHH
Q 048142 83 CGQGNKALEYFYEMQ----IRGVKPDAITFVG-VLVACSHAGLVDERISHFNLMSEKYGI----RPSIEHYGCLVYILGR 153 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~----~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~m~~~~g~----~p~~~~~~~li~~~~~ 153 (352)
...+.++..++++.. +.| .||+..... -..-.....++++|+++|++-..-... ..-...+..+-..|.+
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~G-spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECG-SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 344556666665543 223 334332210 011112345667777777665432111 1113345556667777
Q ss_pred cCCHHHHHHHHHhCC-------CCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCCCcchHHHHHHHHhhcC
Q 048142 154 AGRIAKAEELIKNMP-------MALDH-FVLGGLLGACRIHDNLEAAERAAQQLLE----LLPDNGGSYVILSNRYSSSR 221 (352)
Q Consensus 154 ~g~~~~A~~~~~~m~-------~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~li~~~~~~g 221 (352)
..++++|-..|.+-+ ..|+. ..|-+.|-.+.-..++..|++.++.-.+ ..+.+..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 788888766665542 12232 3345555566667789999999988543 2466778889999988 678
Q ss_pred ChHHHHHHHH
Q 048142 222 KWKKVKRIRE 231 (352)
Q Consensus 222 ~~~~a~~~~~ 231 (352)
+.+++.++..
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 8888877644
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.27 E-value=4 Score=37.96 Aligned_cols=155 Identities=15% Similarity=0.026 Sum_probs=100.0
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 048142 37 THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACS 116 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 116 (352)
.-.++++.+.++... ..+.|.+ | ....+.++.-+-+.|..+.|+.+-.. .. .-.....
T Consensus 272 v~~~d~~~v~~~i~~---~~ll~~i------~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl 329 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA---SNLLPNI------P-KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELAL 329 (443)
T ss_dssp HHTT-HHH-----HH---HHTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHH
T ss_pred HHcCChhhhhhhhhh---hhhcccC------C-hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHH
Confidence 456788877665531 1122222 3 34588899999999999999877543 22 2334456
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048142 117 HAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAA 196 (352)
Q Consensus 117 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 196 (352)
+.|+++.|.++.++ .++...|..|.+...+.|+++-|.+.|++.+ -|..|+-.|...|+.+.-.++.
T Consensus 330 ~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 330 QLGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HCT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHH
T ss_pred hcCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHH
Confidence 78999999875332 3477899999999999999999999999986 2556777788889988877777
Q ss_pred HHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 197 QQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 197 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
+...... -++....++.-.|+.++..+++.
T Consensus 397 ~~a~~~~-----~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 397 KIAEERG-----DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHTT------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHcc-----CHHHHHHHHHHcCCHHHHHHHHH
Confidence 6665432 24555555666677777776665
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.26 E-value=5.1 Score=34.75 Aligned_cols=226 Identities=10% Similarity=-0.022 Sum_probs=121.9
Q ss_pred cCCChhHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCCccccccCCc
Q 048142 3 EDSACEEALLLFREVQHKG--LTGDK------VTMVSLLLACTHLGALEVGMWLHPYIMKK----N-IEVDVGLGMALKD 69 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g--~~p~~------~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~l~~ 69 (352)
+.|+.+.|..++.+....- ..|+. ..|+.-.+.+.+..+++.|...+++..+. + ......-+.. .-
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e-lr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE-LR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH-HH
Confidence 6799999999999887632 34433 23444444443333787777766655443 1 1111100000 12
Q ss_pred HHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHH
Q 048142 70 VMTLTALIVVLAMCGQGN---KALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGC 146 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 146 (352)
..+...|+.+|...+..+ +|..+++.+... ..-....|..-+..+.+.++.+.+.+++.+|... +......+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHH
Confidence 245677888888877655 456666666543 2222455656677777799999999999999975 3323334444
Q ss_pred HHHHH---HHcCCHHHHHHHHHhC---CCCCcHHHH--HHHHHH---HHhcCC------HHHHHHHHHHHHH--hCCCCc
Q 048142 147 LVYIL---GRAGRIAKAEELIKNM---PMALDHFVL--GGLLGA---CRIHDN------LEAAERAAQQLLE--LLPDNG 207 (352)
Q Consensus 147 li~~~---~~~g~~~~A~~~~~~m---~~~p~~~~~--~~li~~---~~~~g~------~~~a~~~~~~~~~--~~~~~~ 207 (352)
.+..+ .... .+.|...+..+ .+.|....| ..++.- ....++ ++....+++.+.+ ..+.+.
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 44444 4433 34455555444 233333212 111111 112111 4444555554333 233333
Q ss_pred chHHHH-------HHHHhhcCChHHHHHHHHHH
Q 048142 208 GSYVIL-------SNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 208 ~~~~~l-------i~~~~~~g~~~~a~~~~~~m 233 (352)
.+-..+ ...+.+.+++++|.+.|+--
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 333222 23466889999999998743
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=6.3 Score=34.01 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 104 (352)
...++.. .......|++.+|..+|+........ +...--.|+.+|...|+.+.|..++..+...--...
T Consensus 134 ~e~~~~~-~~~~~~~e~~~~a~~~~~~al~~~~~----------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 134 EEEALAE-AKELIEAEDFGEAAPLLKQALQAAPE----------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred HHHHHHH-hhhhhhccchhhHHHHHHHHHHhCcc----------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH
Confidence 3444333 33457889999999999998876542 334566788999999999999999998765432223
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCcHHHHHH
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-----PMALDHFVLGG 178 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ 178 (352)
......-|..+.+.....+...+-.+.- -.| |...--.+...|...|+.++|.+.+-.+ +. -|...=..
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~~a----adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~ 277 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRRLA----ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKT 277 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHH
Confidence 3332333445555555554444444443 245 6667777888899999999998876554 22 24444555
Q ss_pred HHHHHHhcCCHH
Q 048142 179 LLGACRIHDNLE 190 (352)
Q Consensus 179 li~~~~~~g~~~ 190 (352)
|+..+-..|..|
T Consensus 278 lle~f~~~g~~D 289 (304)
T COG3118 278 LLELFEAFGPAD 289 (304)
T ss_pred HHHHHHhcCCCC
Confidence 666555555333
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.26 E-value=4.1 Score=31.14 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=25.2
Q ss_pred HcCCHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 153 RAGRIAKAEELIKNM----PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++..++.|
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 445555555555554 1111 123333455555555555555555555555444
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=92.23 E-value=9.4 Score=35.25 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHH
Q 048142 7 CEEALLLFREVQH-KGLTGD-KVTMVSLLLACTH---------LGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTA 75 (352)
Q Consensus 7 ~~~A~~~~~~m~~-~g~~p~-~~t~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 75 (352)
.+.|+.+|.+... ..+.|+ ...|..+..++.. ..+..+|.++-+...+.+. .|...-..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~----------~Da~a~~~ 343 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT----------VDGKILAI 343 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC----------CCHHHHHH
Confidence 4677888888772 235554 3344333333221 1233455666666665543 45555556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC---hhHHHHHHHHH
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS---IEHYGCLVYIL 151 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~ 151 (352)
+..++.-.++++.|..+|++... +.|| +.+|...--.+.-.|+.++|.+.+++..+ +.|. .......++.|
T Consensus 344 ~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr---LsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 344 MGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ---LEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCchhhHHHHHHHHHHHH
Confidence 66666667778888888888776 4555 33444444445567888888888877543 3453 33333445566
Q ss_pred HHcCCHHHHHHHHHhC
Q 048142 152 GRAGRIAKAEELIKNM 167 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~m 167 (352)
+.. .+++|..++-+-
T Consensus 419 ~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 419 VPN-PLKNNIKLYYKE 433 (458)
T ss_pred cCC-chhhhHHHHhhc
Confidence 654 477777776543
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.07 E-value=8.4 Score=34.33 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=134.2
Q ss_pred cCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHHHHH-HHHH-cCCCCCccccccCCcHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHK--GLTGDKVTMVSLLLACTHLGALEVGMWLHP-YIMK-KNIEVDVGLGMALKDVMTLTALIV 78 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~-~m~~-~g~~~~~~~~~~l~~~~~~~~li~ 78 (352)
+..+.++|+..+.+-..+ ....--.+|..+..+.++.|.+++++..-- +|.- ...+... .-...|-.+-.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~------~~~ea~lnlar 91 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD------FLLEAYLNLAR 91 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 355677787777666542 111123567778888888888877654322 1111 0011000 22345666666
Q ss_pred HHHhcCChHHHHHHHHHHHH-cCCCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC--CC--ChhHHHHHHHH
Q 048142 79 VLAMCGQGNKALEYFYEMQI-RGVKPD---AITFVGVLVACSHAGLVDERISHFNLMSEKYGI--RP--SIEHYGCLVYI 150 (352)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~--~p--~~~~~~~li~~ 150 (352)
++-+.-++.+++.+-..-.. .|..|- -....++-.++...+-++++.+.|+...+...- .| ...+|-.|-..
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 66666666666665554332 233331 123345666777778899999988887653111 12 35678889999
Q ss_pred HHHcCCHHHHHHHHHhC-------CCCCcHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHH--hCCCCcchH----HH
Q 048142 151 LGRAGRIAKAEELIKNM-------PMALDHFVLGGL-----LGACRIHDNLEAAERAAQQLLE--LLPDNGGSY----VI 212 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~l-----i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~----~~ 212 (352)
|.+..++++|.-+..+. ++.--..-|..+ .-++...|....|.+..++..+ ....|..+| -.
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 99999998876655443 332112333333 3467788888888888888544 233344444 46
Q ss_pred HHHHHhhcCChHHHHHHHHH
Q 048142 213 LSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~ 232 (352)
+.+.|-..|+.|.|..-|+.
T Consensus 252 ~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHhcccHhHHHHHHHH
Confidence 77889999999988776664
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.94 E-value=7.4 Score=34.30 Aligned_cols=117 Identities=13% Similarity=-0.027 Sum_probs=49.2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHH--HHHHh
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALI--VVLAM 82 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li--~~~~~ 82 (352)
|++-+|-..++++.+. .+.|..+++-.=++|.-.|+...-...++++... ..++. | ..+|-.=| -++..
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dl------p-~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADL------P-CYSYVHGMYAFGLEE 187 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCC------c-HHHHHHHHHHhhHHH
Confidence 4444444444444443 2334445555555555555555554444444322 11111 1 11222111 22334
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLM 131 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 131 (352)
.|-+++|.+.-++..+-+ +.|.-+-.++...+-..|++.++.++..+-
T Consensus 188 ~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555555544444321 123333344444444555555555544433
No 258
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=91.76 E-value=0.54 Score=42.16 Aligned_cols=193 Identities=15% Similarity=0.061 Sum_probs=109.2
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH--H--cCCC-CCHhHHH
Q 048142 35 ACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQ--I--RGVK-PDAITFV 109 (352)
Q Consensus 35 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~--~g~~-p~~~t~~ 109 (352)
-+|+.|+...+..+|+..++.|-+ |.. .-..+|..|.++|.-.+++++|++.-..=. . .|-+ -.+.+-.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~-----tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLS-----TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHH-----HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 479999999999999999998853 211 223568888999999999999998643210 0 0110 0112222
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhH---hcCCC-CChhHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 048142 110 GVLVACSHAGLVDERISHFNLMSE---KYGIR-PSIEHYGCLVYILGRAGR--------------------IAKAEELIK 165 (352)
Q Consensus 110 ~ll~~~~~~g~~~~a~~~~~~m~~---~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 165 (352)
.|-+.+--.|.+++|.-...+-.. ..|-. .....+-.|...|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 333333344555555433222111 01111 122333344555544332 233444443
Q ss_pred h-------CCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C-CCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 166 N-------MPMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLEL-----L-PDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 166 ~-------m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
+ ++.. .-...|.+|-+.|.-.|+++.|+...+.-+.. + ......+..+.+++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 2 1211 11345666777777788888888877763321 1 1234567788888888888888888777
Q ss_pred HH
Q 048142 232 LM 233 (352)
Q Consensus 232 ~m 233 (352)
.-
T Consensus 260 ~t 261 (639)
T KOG1130|consen 260 LT 261 (639)
T ss_pred HH
Confidence 54
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.66 E-value=0.9 Score=26.72 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 99 (352)
+|..+...|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666777777788888888888877774
No 260
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.66 E-value=5.6 Score=31.43 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
|+...|..+|+.+.+.|++.. +.++...++-||.......+-.+.. ....+.++--+|.++.+. .+..+
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~-----~~~~i 95 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT-----AYEEI 95 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh-----hHHHH
Confidence 444455555555555554332 3334444455555444433322221 222233333333332110 13344
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 048142 148 VYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m 167 (352)
+..+...|++-+|+++.++.
T Consensus 96 ievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHc
Confidence 45555555555555555543
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=91.63 E-value=11 Score=34.80 Aligned_cols=162 Identities=12% Similarity=0.011 Sum_probs=100.9
Q ss_pred HHH--HHHHHHHhcc-----CChHHHHHHHHHHHHc-CCCCCccccccCCcHHHHHHHHHHHHh---------cCChHHH
Q 048142 27 VTM--VSLLLACTHL-----GALEVGMWLHPYIMKK-NIEVDVGLGMALKDVMTLTALIVVLAM---------CGQGNKA 89 (352)
Q Consensus 27 ~t~--~~li~~~~~~-----g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~li~~~~~---------~g~~~~A 89 (352)
..| ...+.+.... ...+.|..+|.+.... ..+|+ ....|..+..++.. ..+..+|
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~--------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL--------KTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc--------cHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 455 5566665442 2456788889988832 23321 22334444333322 2345567
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHh-C
Q 048142 90 LEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS-IEHYGCLVYILGRAGRIAKAEELIKN-M 167 (352)
Q Consensus 90 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m 167 (352)
.++-++..+.+ .-|+.....+-.+....++++.|...|++.. .+.|| ..+|....-...-+|+.++|.+.+++ +
T Consensus 324 ~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 324 LELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777653 3367777777777777888999999999986 45674 34444444455668999999999998 4
Q ss_pred CCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 168 PMALD---HFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 168 ~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
...|. .......+..|+.++ .+.|++++-+-.+
T Consensus 400 rLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 435 (458)
T PRK11906 400 QLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKETE 435 (458)
T ss_pred ccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhccc
Confidence 54554 344444555666554 7888887765443
No 262
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=15 Score=36.02 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=94.1
Q ss_pred HHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 125 ISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 125 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
+.+.+.+..++|.....-+.+--+.-+...|+-.+|.++-.+.. -||-..|-.-+.+++..+++++-+++.+..+
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----
Confidence 34445555555654444445555667778899999999999987 4799999899999999999998777655443
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcceeehhhhcCcccCchhhhhc
Q 048142 205 DNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGVVHEFVKAGFVPNKSEVLFD 271 (352)
Q Consensus 205 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 271 (352)
.+.-|...+.+|.+.|+.++|.+++-+..... ..+..+.+.|.+.+|.++..+
T Consensus 743 -sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~-------------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 -SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ-------------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -CCCCchhHHHHHHhcccHHHHhhhhhccCChH-------------HHHHHHHHhccHHHHHHHHHH
Confidence 25788999999999999999999987553211 244557788888877776543
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.32 E-value=0.63 Score=25.41 Aligned_cols=31 Identities=29% Similarity=0.080 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 174 FVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
.+|..+...+...|++++|+..|++.++..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3556666666667777777777766666554
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.29 E-value=0.62 Score=25.44 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677888888888888888888888776
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=3.3 Score=36.41 Aligned_cols=157 Identities=10% Similarity=0.007 Sum_probs=105.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh----hHHHHHHHHHHHcCCH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI----EHYGCLVYILGRAGRI 157 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~ 157 (352)
-.|+..+|-..++++.+. .+-|..++.-.=.+|.-.|+.+.-...++++... ..||. .+...+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 467777888888888775 6667778888888888899988888888887753 34444 3333444556678999
Q ss_pred HHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 158 AKAEELIKNM-PMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPD----NGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 158 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
++|++.-++. .++| |.-.-.++...+-.+|+.+++.++..+-.+.... -...|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888876 4443 5566667777777888888888877665442211 11122223334566689999999998
Q ss_pred HHHhcCCCCC
Q 048142 232 LMAERNIKKP 241 (352)
Q Consensus 232 ~m~~~g~~p~ 241 (352)
.=.-.....+
T Consensus 272 ~ei~k~l~k~ 281 (491)
T KOG2610|consen 272 REIWKRLEKD 281 (491)
T ss_pred HHHHHHhhcc
Confidence 7544334333
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.89 E-value=5.5 Score=29.96 Aligned_cols=51 Identities=16% Similarity=-0.008 Sum_probs=27.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK 54 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 54 (352)
..|+.+.|++.|.+.... .+-....||.-..++--.|+.++|++=+++..+
T Consensus 55 E~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred hccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 345566666666555542 122455566666666556666666555555544
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.78 E-value=6.9 Score=30.91 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHhC
Q 048142 90 LEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG--RIAKAEELIKNM 167 (352)
Q Consensus 90 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 167 (352)
++.++.+.+.|++|+...+..+++.+.+.|.+..-.. +.. +++-+|.......+-.+.... -..-|++.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQ-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHh-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 4566667778999999999999999999998765444 445 477777666555554433322 144567777777
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 168 PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
+. .+..++..+...|++-+|.++.+...... ......++.+-.+.+|...-..+++-..+++.+
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~---~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVD---SVPARKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcc---cCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 52 34557778889999999999988764322 223356777777788877777777777665543
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.58 E-value=12 Score=37.17 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=36.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 048142 80 LAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAK 159 (352)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 159 (352)
+.+.|++++|...|-+-... +.|. .+|.-|..+.+...-..+++.+.+. |+.- ..+-..|+.+|.+.++.++
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~-gla~-~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKK-GLAN-SDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHc-cccc-chhHHHHHHHHHHhcchHH
Confidence 34556666666655544332 2222 2333444444444444455555543 4332 2223345555555555555
Q ss_pred HHHHHHhC
Q 048142 160 AEELIKNM 167 (352)
Q Consensus 160 A~~~~~~m 167 (352)
-.++.+.-
T Consensus 450 L~efI~~~ 457 (933)
T KOG2114|consen 450 LTEFISKC 457 (933)
T ss_pred HHHHHhcC
Confidence 44444433
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.57 E-value=6.9 Score=30.57 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=34.4
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHh
Q 048142 116 SHAGLVDERISHFNLMSEKYGIRPS---IEHYGCLVYILGRAGRIAKAEELIKNMP-MALDHFVLGGLLGACRI 185 (352)
Q Consensus 116 ~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~~~~~ 185 (352)
.+.++.+++..++..+.. +.|. ..++..+ .+.+.|++++|..+|+++. -.|....-..|+..|..
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 345566677766666653 3443 2222222 3556777777777777762 22333344445544443
No 270
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.54 E-value=1.2 Score=24.12 Aligned_cols=31 Identities=29% Similarity=0.097 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 048142 175 VLGGLLGACRIHDNLEAAERAAQQLLELLPD 205 (352)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (352)
.|..+-..+...|++++|.+.+++..+..|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445555666666666666666666655543
No 271
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.52 E-value=2.7 Score=29.92 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 88 KALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 88 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.+.| +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 5566666666777899999999999999999999999999999987533 333377777654
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.41 E-value=0.81 Score=25.58 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048142 176 LGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
|+.|...|.+.|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 273
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.32 E-value=13 Score=38.28 Aligned_cols=169 Identities=14% Similarity=0.056 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCccccccC-------CcHHHHHHHH----------HHHHh
Q 048142 22 LTGDKVTMVSLLLACTHLG--ALEVGMWLHPYIMKKNIEVDVGLGMAL-------KDVMTLTALI----------VVLAM 82 (352)
Q Consensus 22 ~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~l-------~~~~~~~~li----------~~~~~ 82 (352)
..|+ .-.-.+|.++.+.+ .++.+++...+...... ....-.++ +....||+-+ -+-..
T Consensus 787 ~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~S 863 (1265)
T KOG1920|consen 787 RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--AVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKS 863 (1265)
T ss_pred cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--chhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHh
Confidence 3566 33457888888888 77778777776664211 11111111 3333454433 33445
Q ss_pred cCChHHHHHHHHHHHHc-----CCCCCHh--HHHHHHHHHhccC--CHHHHHHHHHHhhHh-cC---CCCChhHHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIR-----GVKPDAI--TFVGVLVACSHAG--LVDERISHFNLMSEK-YG---IRPSIEHYGCLVY 149 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~-----g~~p~~~--t~~~ll~~~~~~g--~~~~a~~~~~~m~~~-~g---~~p~~~~~~~li~ 149 (352)
+.|+.+=+-++++++.. .++.|.+ -|...+.-+...| -+++...+.++-..- .+ ..|+...+.....
T Consensus 864 qkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~ 943 (1265)
T KOG1920|consen 864 QKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYE 943 (1265)
T ss_pred ccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHH
Confidence 67777777777777631 1222222 2334444444444 455555443332110 00 2456555544443
Q ss_pred HH----HHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048142 150 IL----GRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQL 199 (352)
Q Consensus 150 ~~----~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (352)
+| ...+.+++|.-.|+..|.. .--+.+|...|+|.+|..+..++
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gkl------ekAl~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKL------EKALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccH------HHHHHHHHHhccHHHHHHHHHhh
Confidence 33 3445555555555554310 11234444455555555444433
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.26 E-value=9.3 Score=31.56 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPD-AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
..||-|.-.+...|+++.|.+.|+...+. .|. ..++..---++--.|++.-|.+-+-..-+.-.-.|-...|--++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 46888888888999999999999998874 332 22222222233346888888776665543212223233332222
Q ss_pred HHHHcCCHHHHHHHH-HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------cchHHHHHHHHhhcC
Q 048142 150 ILGRAGRIAKAEELI-KNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN-------GGSYVILSNRYSSSR 221 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g 221 (352)
-+.-+..+|..-+ ++.. ..|..-|...|-.+.--.-.+ +.+++++......+ ..||-.|...|...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2233455555443 3332 345566666555443222111 23444444433222 357888889999999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 048142 222 KWKKVKRIRELMAERNI 238 (352)
Q Consensus 222 ~~~~a~~~~~~m~~~g~ 238 (352)
+.++|..+|+-....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998776554
No 275
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.18 E-value=11 Score=32.46 Aligned_cols=171 Identities=17% Similarity=0.037 Sum_probs=117.1
Q ss_pred cHHHHHHHHHHHHh------cC-----ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhh-----
Q 048142 69 DVMTLTALIVVLAM------CG-----QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMS----- 132 (352)
Q Consensus 69 ~~~~~~~li~~~~~------~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~----- 132 (352)
...+|.+.|+++.. +| ...+|+++|.-+.+.. --.++-.-++.++-...+..+|...+....
T Consensus 121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRK 198 (361)
T COG3947 121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRK 198 (361)
T ss_pred chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence 34567777777762 11 3568999999988752 233555667788888888777766654322
Q ss_pred --Hhc------------------CCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhC-C-CCC--------c-----HHHH
Q 048142 133 --EKY------------------GIRPSIEHYGCLVYILGR-AGRIAKAEELIKNM-P-MAL--------D-----HFVL 176 (352)
Q Consensus 133 --~~~------------------g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~-~~p--------~-----~~~~ 176 (352)
... +...|..-|-..+.-..+ +-.++++.++.... | .-| | ..+|
T Consensus 199 aLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly 278 (361)
T COG3947 199 ALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLY 278 (361)
T ss_pred HhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHH
Confidence 210 123456666666655433 34577777777665 1 001 1 2345
Q ss_pred HHHH----HHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH-----hcCCCCC
Q 048142 177 GGLL----GACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA-----ERNIKKP 241 (352)
Q Consensus 177 ~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~ 241 (352)
..++ ..|..+|.+.+|.++.++.+..+|.+...|..|+..++..|+--.|.+-++.+. +-|+..+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 4444 688999999999999999999999999999999999999999888888888774 4566544
No 276
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.06 E-value=2.4 Score=29.84 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 85 QGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
|.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+..+.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 44466667777777788999999999999999999999999999988754 3334456666654
No 277
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.89 E-value=0.98 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777888888888888888777654
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.40 E-value=8.5 Score=30.81 Aligned_cols=102 Identities=12% Similarity=-0.014 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
...+..+..-|.+.|+.+.|.+.|.++.+....+. .-...+-.+|....-.+++..+.....+....--.+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~-------~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG-------HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence 35678899999999999999999999988654422 23456788899999999999999998887654222222
Q ss_pred hHHHHHHHHH-----hccCCHHHHHHHHHHhhHh
Q 048142 106 ITFVGVLVAC-----SHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 106 ~t~~~ll~~~-----~~~g~~~~a~~~~~~m~~~ 134 (352)
....+=+.++ ...+++.+|-+.|-+....
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2222222222 2467888888888776543
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.35 E-value=0.19 Score=38.64 Aligned_cols=85 Identities=9% Similarity=0.065 Sum_probs=42.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
+|..+.+.+.++....+++.+...+...+....+.++..|++.+..++...+++... . .-...+++.+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhcc
Confidence 445555555556666666665554444445555566666666655555544443111 1 11223455555555
Q ss_pred CHHHHHHHHHhCC
Q 048142 156 RIAKAEELIKNMP 168 (352)
Q Consensus 156 ~~~~A~~~~~~m~ 168 (352)
.+++|.-++.+++
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 5555555555553
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.31 E-value=14 Score=32.33 Aligned_cols=124 Identities=10% Similarity=0.150 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc--cC----CHHHHHHHHHHhhHhcCC--CCChhHHHHHHHHHHHcCCH
Q 048142 86 GNKALEYFYEMQIRGVKPDAITFVGVLVACSH--AG----LVDERISHFNLMSEKYGI--RPSIEHYGCLVYILGRAGRI 157 (352)
Q Consensus 86 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~m~~~~g~--~p~~~~~~~li~~~~~~g~~ 157 (352)
+++.+++++.|.+.|++-+..+|.+....... .. ....|..+|+.|++.+.+ .++...+..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788999999999888887764333332 22 345789999999998654 3445555555444 33333
Q ss_pred H----HHHHHHHhC---CCCC-cHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHh-CCCCcchHH
Q 048142 158 A----KAEELIKNM---PMAL-DHFVLGGLLGACRIHDN---LEAAERAAQQLLEL-LPDNGGSYV 211 (352)
Q Consensus 158 ~----~A~~~~~~m---~~~p-~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~-~~~~~~~~~ 211 (352)
+ .++.+|+.+ ++.. |..-+.+-+-++..... ...+.++++.+.+. .+.....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 3 344444444 4443 33334333333332222 33556666666553 333333343
No 281
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.23 E-value=18 Score=33.36 Aligned_cols=217 Identities=13% Similarity=0.038 Sum_probs=131.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKV------TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTAL 76 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~l 76 (352)
+.+++.+|.++|.+.-.+- ..+.. .-+.+|++|. ..+++.....+.++.+.... ..|-.|
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~------------s~~l~L 83 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK------------SAYLPL 83 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC------------chHHHH
Confidence 4688999999999887642 22322 2346777764 45667666666666654221 245555
Q ss_pred HHHH--HhcCChHHHHHHHHHHHHc--CCCC------------CHhHHHHHHHHHhccCCHHHHHHHHHHhhHhc---CC
Q 048142 77 IVVL--AMCGQGNKALEYFYEMQIR--GVKP------------DAITFVGVLVACSHAGLVDERISHFNLMSEKY---GI 137 (352)
Q Consensus 77 i~~~--~~~g~~~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---g~ 137 (352)
..++ -+.+.+.+|++.|..-.+. +-+| |..-=+..+.++...|++.+|+.+++++..+. ..
T Consensus 84 F~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~ 163 (549)
T PF07079_consen 84 FKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC 163 (549)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh
Confidence 5443 4678899999988877665 3222 22222456778889999999999998887641 23
Q ss_pred CCChhHHHHHHHHHHHcCCHHH--------HHHHH-------HhC-----------------------------------
Q 048142 138 RPSIEHYGCLVYILGRAGRIAK--------AEELI-------KNM----------------------------------- 167 (352)
Q Consensus 138 ~p~~~~~~~li~~~~~~g~~~~--------A~~~~-------~~m----------------------------------- 167 (352)
..+..+|+-++-+|+++--++- +-+.+ ++|
T Consensus 164 ~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 164 EWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred cccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccH
Confidence 4688888887766665422111 11111 111
Q ss_pred -----------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 168 -----------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLEL-----LPDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 168 -----------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
-+.|+ ......|+..+.+ +.+++..+.+.+... ...-..++..++....+.++...|.+.+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 02232 1222333333333 455555555554332 2223467888899999999999999998
Q ss_pred HHHHh
Q 048142 231 ELMAE 235 (352)
Q Consensus 231 ~~m~~ 235 (352)
.-+.-
T Consensus 322 ~lL~~ 326 (549)
T PF07079_consen 322 ALLKI 326 (549)
T ss_pred HHHHh
Confidence 87764
No 282
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=3.5 Score=40.03 Aligned_cols=106 Identities=17% Similarity=0.079 Sum_probs=58.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
-+.-+...|+-.+|.++-.+.+ -||-.-|-.-+.+++..+++++-+++-+.++ ++..|.-.+.+|.+.|
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhcc
Confidence 3344445566666665555443 3455555556666666666666555433332 2444555566666667
Q ss_pred CHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 156 RIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 156 ~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
+.+||..++.+.+-.+ -...+|.+.|++.+|.++.-+
T Consensus 759 n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 7777777666663222 244455666666666555433
No 283
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.02 E-value=13 Score=31.46 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=51.0
Q ss_pred cCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKG--LTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL 80 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~ 80 (352)
+.|++++|.+.|+.+.... -+-...+-..++.++-+.++.+.|....++..+.-... || .-|-.-|.++
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~--------~n-~dY~~YlkgL 116 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH--------PN-ADYAYYLKGL 116 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--------CC-hhHHHHHHHH
Confidence 5799999999999998642 11245666778888899999999999999988754331 33 3565556655
Q ss_pred H
Q 048142 81 A 81 (352)
Q Consensus 81 ~ 81 (352)
+
T Consensus 117 s 117 (254)
T COG4105 117 S 117 (254)
T ss_pred H
Confidence 5
No 284
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=18 Score=32.91 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHH-hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcC
Q 048142 24 GDKVTMVSLLLAC-THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA--MCGQGNKALEYFYEMQIRG 100 (352)
Q Consensus 24 p~~~t~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g 100 (352)
|...+|-.|=.-| .-.|+.++|..+-....+.... -.+...+++.+ -.++.+.|...|++-..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~------------n~~al~vrg~~~yy~~~~~ka~~hf~qal~-- 231 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT------------NAEALYVRGLCLYYNDNADKAINHFQQALR-- 231 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc------------hhHHHHhcccccccccchHHHHHHHhhhhc--
Confidence 5556666554444 6788999998887777765421 23444554433 46789999999998876
Q ss_pred CCCCHhHHHHH---HHH----------HhccCCHHHHHHHHHHhhHhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHH
Q 048142 101 VKPDAITFVGV---LVA----------CSHAGLVDERISHFNLMSEKYGIRPS-----IEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 101 ~~p~~~t~~~l---l~~----------~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~ 162 (352)
..||...--.+ .+. ..+.|++.+|.+.|.+.. ++.|+ ...|-....+..+.|+.++|+.
T Consensus 232 ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 232 LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhh
Confidence 45655443222 222 246789999999998886 45554 4455555566778899999998
Q ss_pred HHHhCCCCCc-HHHHHHHH--HHHHhcCCHHHHHHHHHHHHHh
Q 048142 163 LIKNMPMALD-HFVLGGLL--GACRIHDNLEAAERAAQQLLEL 202 (352)
Q Consensus 163 ~~~~m~~~p~-~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~ 202 (352)
--+..- ..| ...+..+. .++...++|++|.+-++...+.
T Consensus 309 dc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 309 DCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 877662 233 23333333 3456678888998888886553
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.70 E-value=11 Score=30.21 Aligned_cols=190 Identities=18% Similarity=0.072 Sum_probs=138.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhc
Q 048142 39 LGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR-GVKPDAITFVGVLVACSH 117 (352)
Q Consensus 39 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~ 117 (352)
.+....+...+.......... .....+......+...++...+...+...... ........+......+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (291)
T COG0457 36 LGELAEALELLEEALELLPNS--------DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEA 107 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc--------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 456666666666666544320 12467788888999999999999999988753 244456667777778888
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH-HHHHcCCHHHHHHHHHhC-CCCC----cHHHHHHHHHHHHhcCCHHH
Q 048142 118 AGLVDERISHFNLMSEKYGIRPSIEHYGCLVY-ILGRAGRIAKAEELIKNM-PMAL----DHFVLGGLLGACRIHDNLEA 191 (352)
Q Consensus 118 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~ 191 (352)
.+....+...+...... ...+ ......... .+...|++++|...+++. ...| ....+......+...++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 108 LGKYEEALELLEKALAL-DPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HhhHHHHHHHHHHHHcC-CCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence 88899999999888753 2222 122223333 788999999999999986 2222 23444444455778899999
Q ss_pred HHHHHHHHHHhCCC-CcchHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 192 AERAAQQLLELLPD-NGGSYVILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 192 a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
+...+....+..+. ....+..+...+...++++.+...+........
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 99999999988777 678889999999999999999999998876443
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.60 E-value=21 Score=33.35 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHhhcCChHHHHHHHHH
Q 048142 179 LLGACRIHDNLEAAERAAQQLLELLPD--NGGSYVILSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (352)
+..++.+.|+.++|++.+++|.+..|. +......|+.++...+.+.++..++.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 333344445555555555555443332 223444555555555555555555444
No 287
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.60 E-value=6.4 Score=32.01 Aligned_cols=76 Identities=14% Similarity=-0.001 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChH
Q 048142 8 EEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGN 87 (352)
Q Consensus 8 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~ 87 (352)
++|++.|-.+...+.--|+.....|. .|-...+.+++..++-...+..-..+. +|...+.+|++.|-+.|+++
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~------~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDN------FNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHhcchh
Confidence 57888888888877554555544444 444577889999998888775433223 78888999999999999998
Q ss_pred HHH
Q 048142 88 KAL 90 (352)
Q Consensus 88 ~A~ 90 (352)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.20 E-value=4.8 Score=28.69 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=33.3
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 048142 168 PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSN 215 (352)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 215 (352)
...|++.+..+.+.+|.+.+++..|.++++-++....+....|..++.
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 566888888888888888888888888888887765555447766554
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.18 E-value=5.7 Score=34.63 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=68.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIR---GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
.+.+-..++..-....++++++..+-++... -..|+...+ +.++-|.+ =+.++++.++..=.+ ||+-||..++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIq-YGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQ-YGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcch-hccccchhhHH
Confidence 3445556666666778899999988888753 123333222 23333332 366788888877776 69999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 048142 146 CLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m 167 (352)
.+|+.+.+.+++.+|..+...|
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 9999999999999998887766
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.08 E-value=1.5 Score=23.62 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566777788888888888888888766
No 291
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.08 E-value=15 Score=31.08 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=110.4
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGV--KPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG 145 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 145 (352)
|-...|+.-+..+ +.|++++|.+.|+.+...-. +-...+--.++-++-+.++.++|...+++..+.++-.||. -|-
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 4445566555544 68999999999999986521 1123455667778889999999999999999887777764 344
Q ss_pred HHHHHHHHc-------CCHHHHHHHH---HhC----C---CCCcHHHH------------HHHHHHHHhcCCHHHHHHHH
Q 048142 146 CLVYILGRA-------GRIAKAEELI---KNM----P---MALDHFVL------------GGLLGACRIHDNLEAAERAA 196 (352)
Q Consensus 146 ~li~~~~~~-------g~~~~A~~~~---~~m----~---~~p~~~~~------------~~li~~~~~~g~~~~a~~~~ 196 (352)
.-|.+++.- .+...+.+-| ++. | ..||+..- ..+..-|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 444444432 2223333333 332 2 33454321 12335678899999999999
Q ss_pred HHHHHhCCCCcchH---HHHHHHHhhcCChHHHHHHHHHHHh
Q 048142 197 QQLLELLPDNGGSY---VILSNRYSSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 197 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~ 235 (352)
++|.+..+.+..+. -.+..+|-..|-.++|.+.-.-+..
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99988766555444 4667789999999999887666643
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.01 E-value=3 Score=36.22 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048142 21 GLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKN---IEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQ 97 (352)
Q Consensus 21 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 97 (352)
|......+...++..-.+..+++.+...+-++.... ..++ .+.++|--++ -.-++++++.++..=.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-------~~~~~~irll----lky~pq~~i~~l~npI 127 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-------WTIHTWIRLL----LKYDPQKAIYTLVNPI 127 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-------ccHHHHHHHH----HccChHHHHHHHhCcc
Confidence 444455566666666666778888887776665431 1111 2333443333 2346889999999999
Q ss_pred HcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 048142 98 IRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 98 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 134 (352)
+.|+-||..|++.+|+.+.+.++..+|.++.-.|..+
T Consensus 128 qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 128 QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888777764
No 293
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.97 E-value=7.9 Score=29.73 Aligned_cols=97 Identities=9% Similarity=0.052 Sum_probs=63.6
Q ss_pred HHCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCC-hHHHHHHHH
Q 048142 18 QHKGLTGDKV--TMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQ-GNKALEYFY 94 (352)
Q Consensus 18 ~~~g~~p~~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~-~~~A~~~~~ 94 (352)
+..+..++.. ..|.++.-....+++.....+++.+... .++..... .+..+|.+++.+.++..- ---+..+|+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l--~~~~~~~~--~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFL--NTDNIIGW--LDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHh--hHHHHhhh--cccchHHHHHHHHccChHHHHHHHHHHH
Confidence 4445555543 3577888878888888888888777432 11100000 455578888888865554 345677888
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhcc
Q 048142 95 EMQIRGVKPDAITFVGVLVACSHA 118 (352)
Q Consensus 95 ~m~~~g~~p~~~t~~~ll~~~~~~ 118 (352)
-|++.+.+++..-|..+|.++.+.
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 888777888888888888887654
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.95 E-value=1 Score=24.83 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.7
Q ss_pred CcHHHHHHHHHHHHhcCChHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKAL 90 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~ 90 (352)
.|...|+.|...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 57789999999999999999986
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.95 E-value=8.1 Score=29.75 Aligned_cols=47 Identities=11% Similarity=0.283 Sum_probs=29.8
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 048142 117 HAGLVDERISHFNLMSEKYGIRPS---IEHYGCLVYILGRAGRIAKAEELIKNMP 168 (352)
Q Consensus 117 ~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 168 (352)
..++++++..+++.|.- +.|+ ..++...+ +...|++++|..+|+++.
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWL--LIARGNYDEAARILRELL 71 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhh
Confidence 46777777777777753 3443 33333333 557777888888887774
No 296
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.56 E-value=22 Score=32.24 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=25.4
Q ss_pred CCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 168 PMALDHF-VLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 168 ~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
+..||.+ .--.-..++.+.|+..++-.+++.+-+..|
T Consensus 257 KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 257 KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 3556532 223334678899999999999999877544
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.20 E-value=13 Score=29.50 Aligned_cols=132 Identities=15% Similarity=0.092 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
..+|...+.. ++.+..++|+.-|..+.+.|...- | +..---+.......|+-.+|...|.+.-...-.|-.
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~Y-------p-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~ 129 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSY-------P-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI 129 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcc-------h-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch
Confidence 4455555543 566666777777777777665421 1 122233445556677777777777777664444433
Q ss_pred h-HHHHHH--HHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 106 I-TFVGVL--VACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 106 ~-t~~~ll--~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
. -..-|= -.+...|.+++.....+-+... +-+.-...-.+|--+-.+.|++.+|...|..+
T Consensus 130 ~rd~ARlraa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 130 GRDLARLRAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred hhHHHHHHHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 2 111121 1234567777776666666543 33334444555655566777777777777766
No 298
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.18 E-value=26 Score=32.87 Aligned_cols=177 Identities=11% Similarity=0.035 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVK 102 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 102 (352)
..|.....+++..++..-.+.-.+.+-.+|...| .+-..|-.++.+|..+ ..++-..+++++.+..+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-----------e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn 130 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-----------ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN 130 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch
Confidence 3477777888888888888888888999998877 4556888999999988 567888899988886432
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCc
Q 048142 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS------IEHYGCLVYILGRAGRIAKAEELIKNM----PMALD 172 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~ 172 (352)
|.+.-..|..-|-+ ++...+..+|..... .+.|. ...|.-|+... ..+.|.-+.+..++ +...-
T Consensus 131 -Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~ 204 (711)
T COG1747 131 -DVVIGRELADKYEK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRG 204 (711)
T ss_pred -hHHHHHHHHHHHHH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchH
Confidence 44444455555544 888888888888875 34442 23455544322 24566666666555 44455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 173 HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
.+.+.-+-.-|....++++|++++..+.+.+..|...-..++..+
T Consensus 205 ~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 205 SVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 677777778889999999999999988887777766666665554
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.72 E-value=23 Score=31.60 Aligned_cols=185 Identities=9% Similarity=0.007 Sum_probs=103.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCC-CHhHH
Q 048142 33 LLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRG---VKP-DAITF 108 (352)
Q Consensus 33 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p-~~~t~ 108 (352)
..+..+.|+|+...+......... ++...|.++... +.++++++....++....- ..+ ....|
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~-----------~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~ 71 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDS-----------PEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESY 71 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCC-----------hhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 456778899888555444433211 445566666554 7889999988888776531 110 11122
Q ss_pred HHHHHHHhc---cCCHHHHHHHHHHh--------------hHhc-CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 048142 109 VGVLVACSH---AGLVDERISHFNLM--------------SEKY-GIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP-M 169 (352)
Q Consensus 109 ~~ll~~~~~---~g~~~~a~~~~~~m--------------~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 169 (352)
........+ ...++++..+.... ..+. ...++..++..++..-. -+++.+. .
T Consensus 72 ~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~ 142 (352)
T PF02259_consen 72 QRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLP 142 (352)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccch
Confidence 222222222 23333333333111 1110 11223333333222100 0111111 2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 170 ALDHFVLGGLLGACRIHDNLEAAERAAQQLLELL----PDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 170 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
.....+|..+...+.+.|.++.|...+..+.+.. ...+.....-.......|+.++|...++...+..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 3456789999999999999999999999987643 113455556677788899999999999888774333
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.68 E-value=6.9 Score=30.59 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=47.6
Q ss_pred hHHHHHHHHH---HHcCCHHHHHHHHHhC-CCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Q 048142 142 EHYGCLVYIL---GRAGRIAKAEELIKNM-PMALD---HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214 (352)
Q Consensus 142 ~~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 214 (352)
.+.+.||... .+.++.+++..++..+ -.+|. ..++...+ +...|++++|.++|+.+.+..|..+ .-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~~~p-~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAPGFP-YAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCCCh-HHHHHH
Confidence 3444555544 3577999999999988 34454 44444333 6788999999999999866544333 334444
Q ss_pred HHHh
Q 048142 215 NRYS 218 (352)
Q Consensus 215 ~~~~ 218 (352)
..|.
T Consensus 85 A~CL 88 (160)
T PF09613_consen 85 ALCL 88 (160)
T ss_pred HHHH
Confidence 4443
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.63 E-value=26 Score=32.33 Aligned_cols=31 Identities=10% Similarity=-0.159 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMKKN 56 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 56 (352)
..+|..+++...+.++...|.+.+..+....
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 4578888999999999999988888777643
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.12 E-value=18 Score=35.37 Aligned_cols=217 Identities=14% Similarity=0.108 Sum_probs=92.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
.|+++.|++.+-+ ..+...|.+.+.+.+.-++-.+-..... ..+...... . |....+..||..|.+.
T Consensus 271 tgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~--~------~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 271 TGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPG--D------PPPLNFARLIGQYTRS 337 (613)
T ss_dssp TT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-----------------------------------HHHHHHHHHHT
T ss_pred HhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCC--C------CCCcCHHHHHHHHHHH
Confidence 4677777776644 2334445555555554443322222111 222221110 0 2225688999999874
Q ss_pred ---CChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHH-hccCCHHHHHHHHHHhhHh--------------cCCCCChhHH
Q 048142 84 ---GQGNKALEYFYEMQIRGVKPDAI-TFVGVLVAC-SHAGLVDERISHFNLMSEK--------------YGIRPSIEHY 144 (352)
Q Consensus 84 ---g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~-~~~g~~~~a~~~~~~m~~~--------------~g~~p~~~~~ 144 (352)
.+..+|++.|--+....- |+.. .+...+.-+ ...++++ .++..+..+ .++..+..-.
T Consensus 338 F~~td~~~Al~Y~~li~~~~~-~~~~~l~~~~l~eLvletref~---~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~ 413 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLFKD-PEQRNLFHECLRELVLETREFD---LLLGDINPDGSRTPGLIERRLSLIKFDDDEDFL 413 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS-S-CCHHHHHHHHHHHHHHHH--HH---HHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHH
T ss_pred HhccCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHccCCHH---HHCCCCCCCCccccceeeccccccCCCCcHHHH
Confidence 578888888877765422 2322 222222222 1122111 111111111 1233222222
Q ss_pred HHHH----HHHHHcCCHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcC-C-----------HHHHHHHHHHHHHh----
Q 048142 145 GCLV----YILGRAGRIAKAEELIKNMPMALD--HFVLGGLLGACRIHD-N-----------LEAAERAAQQLLEL---- 202 (352)
Q Consensus 145 ~~li----~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~li~~~~~~g-~-----------~~~a~~~~~~~~~~---- 202 (352)
..++ .-+...|++++|..+|.-.+ ..| ....|.+++...... . ...|..+.+.....
T Consensus 414 ~~i~~~~A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~ 492 (613)
T PF04097_consen 414 REIIEQAAREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHIS 492 (613)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchH
Confidence 2222 33557899999999999886 333 334455554333222 2 33444444443221
Q ss_pred ---CCCCcchHHHHHHH-----HhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 203 ---LPDNGGSYVILSNR-----YSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 203 ---~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
.+.+..|+..|++. +...|++++|++.++ +.++-|.
T Consensus 493 ~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~---~L~liP~ 536 (613)
T PF04097_consen 493 SKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIE---KLDLIPL 536 (613)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH---HTT-S-S
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---hCCCCCC
Confidence 12233455555543 577899999986666 4567773
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.12 E-value=6.4 Score=27.79 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=30.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 048142 168 PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSN 215 (352)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 215 (352)
...|++.+..+-+.+|.+.+++..|.++++-++.....+...|..++.
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 455677777777777777777777777777666544434445554443
No 304
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.86 E-value=22 Score=30.73 Aligned_cols=123 Identities=8% Similarity=-0.004 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHhc--cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 73 LTALIVVLAMCGQGNKALEYFYEMQI-RGVKPDAITFVGVLVACSH--AGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
|..|+. ++....+|+.+|+...- ..+--|......+++.... ......-.++.+-+...++-.++..+...+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666653 34456788888873322 2355577777777777765 22344445555566665567788888888999
Q ss_pred HHHHcCCHHHHHHHHHhC----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 150 ILGRAGRIAKAEELIKNM----PMALDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
.+++.+++.+-.++++.. +..-|...|..+|......|+..-...+..+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999999999999998876 1234678888899998888888776666554
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.35 E-value=48 Score=34.49 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=24.1
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 048142 148 VYILGRAGRIAKAEELIKNMPMALDHFV--LGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
+.+|..+|+|.+|+.+-.++....|... -..|++-+...++.-+|-++..+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 4445555556665555555532223221 24445555555554444444443
No 306
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.74 E-value=6.4 Score=32.46 Aligned_cols=56 Identities=16% Similarity=-0.008 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 048142 74 TALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNL 130 (352)
Q Consensus 74 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 130 (352)
+.-|+.+.+.+.+++|+...++-.+. -+.|..+-..+++.+|-.|++++|..-++-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 34455566666666666666555543 122344455566666666666666554443
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.51 E-value=2.7 Score=23.83 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048142 26 KVTMVSLLLACTHLGALEVGMWLHPYIMK 54 (352)
Q Consensus 26 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 54 (352)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46789999999999999999999998875
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.86 E-value=13 Score=34.45 Aligned_cols=127 Identities=10% Similarity=0.060 Sum_probs=81.1
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048142 117 HAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-P-MALDHFVLGGLLGACRIHDNLEAAER 194 (352)
Q Consensus 117 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~li~~~~~~g~~~~a~~ 194 (352)
..|++-.|-+-+....+++.-.|+....-+.| ....|.++.+...+... + +.....+-..++......|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34666555443333334345566655544444 45679999999988776 2 22346677888999999999999999
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCcee
Q 048142 195 AAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCI 245 (352)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 245 (352)
....|+.....++.........--..|-++++.-.|+++..-+-..+.++.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 999888754434333332222334557788888888888765554444443
No 309
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.79 E-value=3.2 Score=22.37 Aligned_cols=29 Identities=21% Similarity=0.029 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 048142 175 VLGGLLGACRIHDNLEAAERAAQQLLELL 203 (352)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (352)
+|..+-..+...|+.++|...|++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444555555666666666665555443
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.51 E-value=6.3 Score=32.05 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHcCCHHHHHHHHHhC----CCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCCh
Q 048142 151 LGRAGRIAKAEELIKNM----PMAL---DHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m----~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 223 (352)
+.++|++++|..-|... +..+ -.+.|..=..++.+.+.++.|+.-..+.++..|........-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44567777766666554 1111 1234444445666777777777777777666664444444445567777777
Q ss_pred HHHHHHHHHHHhcC
Q 048142 224 KKVKRIRELMAERN 237 (352)
Q Consensus 224 ~~a~~~~~~m~~~g 237 (352)
++|++=|..+.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777776543
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.76 E-value=23 Score=28.88 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=32.7
Q ss_pred HHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-----C-CCCcHHHHHHHHHHHHhcCCHHHH
Q 048142 123 ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-----P-MALDHFVLGGLLGACRIHDNLEAA 192 (352)
Q Consensus 123 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~-~~p~~~~~~~li~~~~~~g~~~~a 192 (352)
.|.+.|-.+... +.--++.....|...|. ..+.++|..++.+. + -.+|+..+.+|.+.+.+.|+.+.|
T Consensus 124 ~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444433 33334444444444444 33455555554443 1 245555555566555555555554
No 312
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.48 E-value=32 Score=29.83 Aligned_cols=126 Identities=8% Similarity=0.005 Sum_probs=82.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCccccccCCcHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHH-cCCCCC
Q 048142 29 MVSLLLACTHLGALEVGMWLHPYIMKK-NIEVDVGLGMALKDVMTLTALIVVLAM-CG-QGNKALEYFYEMQI-RGVKPD 104 (352)
Q Consensus 29 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~-~g~~p~ 104 (352)
|..|+. +...+.+|+.+|+..... .+- .|..+-..|++.... .+ ....-.++.+-+.. .|-.++
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii---------~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~ 201 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESII---------FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLT 201 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCccccee---------eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCC
Confidence 666653 344566777777733221 122 455566666666655 21 23333333333332 346777
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 048142 105 AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKN 166 (352)
Q Consensus 105 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 166 (352)
..+...+|..++..+++.+-.++++.-....+..-|...|...|......|+..-...+.++
T Consensus 202 ~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 202 RNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 78888899999999999999998888765323444788899999999999998888888765
No 313
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.32 E-value=21 Score=30.67 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=57.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH-
Q 048142 77 IVVLAMCGQGNKALEYFYEMQIR--GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR- 153 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~- 153 (352)
|.+++..+++.+++...-+--+. .++|.. .-.-|-.|++.+.+..+.++-..-.+. .-.-+...|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 68888888888888766554432 244433 334455678888888888877777664 223344457777776665
Q ss_pred ----cCCHHHHHHHHH
Q 048142 154 ----AGRIAKAEELIK 165 (352)
Q Consensus 154 ----~g~~~~A~~~~~ 165 (352)
.|.++||+++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 588888888873
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.17 E-value=3.5 Score=20.98 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 048142 146 CLVYILGRAGRIAKAEELIK 165 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~ 165 (352)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555543
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.47 E-value=10 Score=29.28 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=38.4
Q ss_pred HHHHHHHHHH---HcCCHHHHHHHHHhC----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 143 HYGCLVYILG---RAGRIAKAEELIKNM----PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 143 ~~~~li~~~~---~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
+.+.||+... ..++++++..+++.| |..|...++...+ +...|++++|.++|+++.+..+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC
Confidence 3444444432 467888888888887 3333444554444 5677888888888888876543
No 316
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.10 E-value=59 Score=31.42 Aligned_cols=118 Identities=14% Similarity=0.030 Sum_probs=65.3
Q ss_pred cCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC-----ChHHHHHHHHHHHHcCCCCCccccccCCcH
Q 048142 3 EDSACEEALLLFREVQH-------KGLTGDKVTMVSLLLACTHLG-----ALEVGMWLHPYIMKKNIEVDVGLGMALKDV 70 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 70 (352)
...+++.|+..|+.... .| +....+-+-.+|.+.. +.+.|..++.+.-+.|. |+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~----------~~a 327 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN----------PDA 327 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC----------chH
Confidence 45677778888777765 44 2234445555554432 55667777777777765 443
Q ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh--ccCCHHHHHHHHHHhhHh
Q 048142 71 MTLTALIVVLAM-CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACS--HAGLVDERISHFNLMSEK 134 (352)
Q Consensus 71 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 134 (352)
...-..+.-... ..+...|.++|...-..|.. +..-+.+++-... -..+.+.|..++.+..++
T Consensus 328 ~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 328 QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 333222222222 24567788888877777644 2222222222222 234667777777777665
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.09 E-value=6.2 Score=21.16 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567777888888888888888887665
No 318
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.30 E-value=20 Score=25.57 Aligned_cols=60 Identities=15% Similarity=-0.086 Sum_probs=40.1
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchH
Q 048142 148 VYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSY 210 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 210 (352)
+..+.+.|++++|..+.+.+. .||...|-+|.. .+.|..+++..-+.++.....|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCE--WRLGLGSALESRLNRLAASGDPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCC-CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCHHHHHH
Confidence 345678899999999998886 789999966654 455666655555555555444433333
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.29 E-value=4.7 Score=21.36 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=13.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 181 GACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
.++...|+.++|.+.|+++.+..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 344455566666666666555444
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.83 E-value=5.3 Score=35.21 Aligned_cols=91 Identities=18% Similarity=0.109 Sum_probs=47.9
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCH
Q 048142 113 VACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM-PMA-LDHFVLGGLLGACRIHDNL 189 (352)
Q Consensus 113 ~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~ 189 (352)
+-|.+.|++++|+..|..-. .+.| +++++..-..+|.+..++..|+.=-+.. ... .-+..|.-=..+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 34556777777777776654 3455 6677776677777776666554433222 110 0122333333333344555
Q ss_pred HHHHHHHHHHHHhCCCC
Q 048142 190 EAAERAAQQLLELLPDN 206 (352)
Q Consensus 190 ~~a~~~~~~~~~~~~~~ 206 (352)
.+|.+=++..+++.|.+
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 55555555555555543
No 321
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.45 E-value=32 Score=27.44 Aligned_cols=129 Identities=15% Similarity=0.127 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChh-HHHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI-TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIE-HYGCLV 148 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li 148 (352)
..|..-+. +++.+..++|+.-|.++.+.|...-.+ .-.-........|+...|...|+++-.. .-.|-.. -..-|=
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 34555444 356788999999999999987653222 1223344567899999999999999876 3344322 112222
Q ss_pred H--HHHHcCCHHHHHHHHHhCCC--CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 149 Y--ILGRAGRIAKAEELIKNMPM--AL-DHFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 149 ~--~~~~~g~~~~A~~~~~~m~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
. .+..+|.+++...-.+-+.. .| -...-..|--+-.+.|++.+|...|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2 35678999999998888821 22 233445666777899999999999999865
No 322
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.99 E-value=2.7 Score=31.58 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=20.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVAC 115 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 115 (352)
.|.-.+|..+|.+|.+.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45556777777777777777774 55666543
No 323
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.93 E-value=29 Score=26.67 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C--CCCHhHHHHHHHHHhccCC-HHHHHHHHHHhhHhcCCCCChhHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRG---V--KPDAITFVGVLVACSHAGL-VDERISHFNLMSEKYGIRPSIEHY 144 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~ 144 (352)
...|+++.-.+..++....+.+++.+..-. + .-|..+|.+++.+.++... --.+..+|.-|++. +.++++.-|
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~-~~~~t~~dy 118 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN-DIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHc-CCCCCHHHH
Confidence 357888888888899999888888884321 0 2355678999999977666 45577888888874 888999999
Q ss_pred HHHHHHHHHc
Q 048142 145 GCLVYILGRA 154 (352)
Q Consensus 145 ~~li~~~~~~ 154 (352)
..||.+..+.
T Consensus 119 ~~li~~~l~g 128 (145)
T PF13762_consen 119 SCLIKAALRG 128 (145)
T ss_pred HHHHHHHHcC
Confidence 9999887654
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.55 E-value=16 Score=33.84 Aligned_cols=127 Identities=18% Similarity=0.150 Sum_probs=83.2
Q ss_pred HHHHHhcCChHHHHH-HHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 77 IVVLAMCGQGNKALE-YFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 77 i~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
|.--...|+.-.|-+ +|..+....-.|+.+-..+.| +...|+++.+.+.+..... -+.....+-.+++...-+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 333344566665554 555555544556665554444 5678999999998887764 34556777888999999999
Q ss_pred CHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 048142 156 RIAKAEELIKNM-PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG 207 (352)
Q Consensus 156 ~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (352)
++++|..+-+.| +.+ -++.....-..+.-..|-+|++...++++....||..
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 999999988877 222 2333333333344556778888888888876655543
No 325
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.06 E-value=48 Score=28.12 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---h-C--CCCcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 176 LGGLLGACRIHDNLEAAERAAQQLLE---L-L--PDNGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~---~-~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
+...-..+.+...+++|-..+.+-.. . . +.--..|...|-.|.-..++..|.+.++.-
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 33344555666666666555554321 1 1 111234666666777788888898888753
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.80 E-value=19 Score=31.88 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=39.8
Q ss_pred CccCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKGLTG-DKVTMVSLLLACTHLGALEVGMWLHPYIMK 54 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 54 (352)
|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|+.=....+.
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5678999999999876654 456 888888888899998888877665555443
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.29 E-value=56 Score=31.49 Aligned_cols=84 Identities=14% Similarity=0.081 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHH
Q 048142 69 DVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLV 148 (352)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 148 (352)
+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-...++. |. .|.-.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~-g~------~N~AF 728 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ-GK------NNLAF 728 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh-cc------cchHH
Confidence 344566666666666666666666655432 344555555555554433333333322 21 22233
Q ss_pred HHHHHcCCHHHHHHHHHhCC
Q 048142 149 YILGRAGRIAKAEELIKNMP 168 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m~ 168 (352)
-+|...|+++++.+++.+-+
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcC
Confidence 34556677777777766553
No 328
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.89 E-value=27 Score=25.37 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888888899999988888876
No 329
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.78 E-value=42 Score=26.90 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 189 LEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
+++|.+.|++..+..|.| .+|..-+... ++|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 344455555555455544 5777666655 3467777777666554
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.72 E-value=85 Score=30.36 Aligned_cols=130 Identities=19% Similarity=0.068 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
.-+.++.-+.+.|..++|+++ .||..- -.....+.|+++.|.++..+.. +..-|..|-++.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHH
Confidence 344455555566666665543 223221 1122345677777776554432 455577777777
Q ss_pred HHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 152 GRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
.+.|++..|.+.|.... -|..|+-.+...|+.+....+.....+....| ...-+|...|+++++.+++.
T Consensus 677 l~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 677 LSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc-----hHHHHHHHcCCHHHHHHHHH
Confidence 77777777777776542 24556666666777665555555554433333 23335667788888777665
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.66 E-value=5.9 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=19.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 212 ILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 212 ~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677888888888888888877543
No 332
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=74.63 E-value=48 Score=29.44 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=60.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHH--HHHHHHHhcCChHHHHHHHHHHHH-----cCCCC
Q 048142 31 SLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLT--ALIVVLAMCGQGNKALEYFYEMQI-----RGVKP 103 (352)
Q Consensus 31 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p 103 (352)
.++...-+.++.++|.++++++.+.-...+. |+.+.|- .+...+...||..++.+++.+.+. .|++|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e------~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~ 153 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKE------PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS 153 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhcc------chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh
Confidence 4444556667899999999998875333333 6666664 455677788999999999998887 67888
Q ss_pred CHhH-HHHH-HHHHhccCCHHHHH
Q 048142 104 DAIT-FVGV-LVACSHAGLVDERI 125 (352)
Q Consensus 104 ~~~t-~~~l-l~~~~~~g~~~~a~ 125 (352)
+..+ |..+ -..|-..|++....
T Consensus 154 ~Vh~~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 154 NVHSSFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred hhhhhHHHHHHHHHHHHHhHHHHH
Confidence 6654 4444 33444566666543
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.07 E-value=25 Score=30.47 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhH----hcCCCCChhHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSE----KYGIRPSIEHY 144 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~~ 144 (352)
+.+.....|..+|.+.+|.++-++.... -+.+...+-.++..+...|+--.+...++.+.+ .+|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444556777788888888888877766 466777777788888888876555555554432 34666655444
No 334
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.03 E-value=37 Score=31.18 Aligned_cols=133 Identities=18% Similarity=0.091 Sum_probs=65.2
Q ss_pred HHHHHHHCCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHH
Q 048142 13 LFREVQHKGLTGDKVT--MVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKAL 90 (352)
Q Consensus 13 ~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~ 90 (352)
+++.+...|..|+... -.+.+...+..|+.+ +.+.+.+.|..++. .+....+ -+...+..|+.+.+.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~------~~~~~~t-~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDV------KYPDIES-ELHDAVEEGDVKAVE 85 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccc------cCCCccc-HHHHHHHCCCHHHHH
Confidence 4455566787776533 234555556777765 44555666766443 1111222 344455677776655
Q ss_pred HHHHHHHHcCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhH--HHHHHHHHHHcCCHHHHHHHH
Q 048142 91 EYFYEMQIRGVKPD----AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEH--YGCLVYILGRAGRIAKAEELI 164 (352)
Q Consensus 91 ~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~ 164 (352)
.+++ .|..++ ..-. +.+...+..|+.+-+ +.+.+. |..|+... -.+.+..-+..|+.+-+..++
T Consensus 86 ~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv----~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 86 ELLD----LGKFADDVFYKDGM-TPLHLATILKKLDIM----KLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHH----cCCcccccccCCCC-CHHHHHHHhCCHHHH----HHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4443 332211 1112 233334455665433 334443 66554321 123344455677776665555
Q ss_pred Hh
Q 048142 165 KN 166 (352)
Q Consensus 165 ~~ 166 (352)
+.
T Consensus 156 ~~ 157 (413)
T PHA02875 156 DH 157 (413)
T ss_pred hc
Confidence 43
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.82 E-value=8.7 Score=22.71 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=16.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRG 100 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g 100 (352)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566667777777777777666543
No 336
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.66 E-value=16 Score=29.58 Aligned_cols=36 Identities=19% Similarity=0.057 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 048142 169 MALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLP 204 (352)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (352)
..|++.+|..++..+...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555555555555555555555555555555444
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.92 E-value=17 Score=30.11 Aligned_cols=89 Identities=12% Similarity=-0.033 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHH
Q 048142 143 HYGCLVYILGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPD---NGGSYVILSNRY 217 (352)
Q Consensus 143 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~ 217 (352)
|.+.-++.+.+.+++++|+...++- +.+|+ ..+-..++..+|-.|++++|..-++..-...|. -...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~- 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC- 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-
Confidence 3445567788889999998887654 55564 455566888999999999999888877665443 34566666653
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCC
Q 048142 218 SSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 218 ~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
+...++.-+-+..|.
T Consensus 82 ---------ea~R~evfag~~~Pg 96 (273)
T COG4455 82 ---------EAARNEVFAGGAVPG 96 (273)
T ss_pred ---------HHHHHHHhccCCCCC
Confidence 334444445555554
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.76 E-value=88 Score=31.13 Aligned_cols=102 Identities=15% Similarity=0.044 Sum_probs=67.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH
Q 048142 77 IVVLAMCGQGNKALEYFYEMQIRGVKPD---AITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR 153 (352)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 153 (352)
|+.+.+.+.+++|++.-+.-. |..|- .......|..+...|++++|-...-.|... +..-|.--+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhcc
Confidence 455678889999988776543 34442 334667788888889999988887777653 55566666666666
Q ss_pred cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 048142 154 AGRIAKAEELIKNMPMALDHFVLGGLLGACRI 185 (352)
Q Consensus 154 ~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~ 185 (352)
.++..+...++-.-+-+.+...|..++..+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 66665544443222223356778888877766
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.62 E-value=96 Score=30.03 Aligned_cols=182 Identities=13% Similarity=0.032 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHH--HHH-HHhcCChHHHHHHHHHHHH-------cCCCCCHhHHHHH
Q 048142 42 LEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTAL--IVV-LAMCGQGNKALEYFYEMQI-------RGVKPDAITFVGV 111 (352)
Q Consensus 42 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~l--i~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~l 111 (352)
...+.+.++...+.|.. .....-.. ..+ +....|.+.|+.+|+...+ .| +......+
T Consensus 228 ~~~a~~~~~~~a~~g~~----------~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~l 294 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS----------EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGL 294 (552)
T ss_pred hhHHHHHHHHHHhhcch----------HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHH
Confidence 46788888888887742 11122222 233 5577899999999999977 55 33345556
Q ss_pred HHHHhccC-----CHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHH
Q 048142 112 LVACSHAG-----LVDERISHFNLMSEKYGIRPSIEHYGCLVYILGR-AGRIAKAEELIKNMP--MALDHFVLGGLLGAC 183 (352)
Q Consensus 112 l~~~~~~g-----~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~--~~p~~~~~~~li~~~ 183 (352)
-.+|.+.. +.+.|..++...... | .|+....-..+..... ..+...|.++|...- -.++..-+-+++...
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYEL 372 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 66666532 667799998887763 4 3444333222222222 235778999998872 133344333333222
Q ss_pred --HhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 184 --RIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 184 --~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
....+.+.|...+++.-+...+...--...+..+.. ++++.+.-.+..+.+.|..
T Consensus 373 G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 373 GLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 244578889999998877554332222233333444 7777777777766666554
No 340
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=72.14 E-value=78 Score=28.78 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=65.2
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHh--CCCCc-----c
Q 048142 148 VYILGRAGRIAKAEELIKNMPMALDHFVLGGL------------LGACRIHDNLEAAERAAQQLLEL--LPDNG-----G 208 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~--~~~~~-----~ 208 (352)
..-+-..|++++|.+++.+.++ .||.++ +..|...+|+-.|.-+-+++... ..|+. .
T Consensus 138 ~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 138 AKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 3345578999999999988853 344332 35678888999998888887543 33332 4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Q 048142 209 SYVILSNRYSSSRKWKKVKRIRELMAERNIK 239 (352)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 239 (352)
.|+.++......+.+-.+.+.|+..-..|..
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~v 244 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYDTGNV 244 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhccccc
Confidence 6889999999999999999999998765443
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.99 E-value=8.3 Score=19.36 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=6.6
Q ss_pred HHHhcCCHHHHHHHHHH
Q 048142 182 ACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 182 ~~~~~g~~~~a~~~~~~ 198 (352)
.+...|+.+.|...++.
T Consensus 10 ~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 10 AYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 33333334444433333
No 342
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.59 E-value=30 Score=25.89 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHH
Q 048142 88 KALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLV 148 (352)
Q Consensus 88 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 148 (352)
+..+-++......+.|+....-.-+.+|.+.+++..|.++|+-.+.+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44445555666678889888888999999999999999999888764 444444555543
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.25 E-value=14 Score=24.95 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHcCCHHHHHH
Q 048142 143 HYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 143 ~~~~li~~~~~~g~~~~A~~ 162 (352)
+...|+.+|+..|++.++++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 344
>PHA03100 ankyrin repeat protein; Provisional
Probab=71.07 E-value=93 Score=29.21 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=59.9
Q ss_pred HHHHHHHCCCCCCHHHH--HHHHHH-----HhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH-hcC
Q 048142 13 LFREVQHKGLTGDKVTM--VSLLLA-----CTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA-MCG 84 (352)
Q Consensus 13 ~~~~m~~~g~~p~~~t~--~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~-~~g 84 (352)
+++.+...|..|+.... .+.+.. ....|.. ++.+.+.+.|..++. ++....+.|..+.. ..|
T Consensus 50 ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~------~d~~g~tpL~~A~~~~~~ 119 (480)
T PHA03100 50 VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNA------PDNNGITPLLYAISKKSN 119 (480)
T ss_pred HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCC------CCCCCCchhhHHHhcccC
Confidence 44555566666543221 123333 3344443 334445566655443 33333444443332 344
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhccC--CHHHHHHHHHHhhHhcCCCCChhH--HHHHHHHHHHcCCHH
Q 048142 85 QGNKALEYFYEMQIRGVKPDAIT--FVGVLVACSHAG--LVDERISHFNLMSEKYGIRPSIEH--YGCLVYILGRAGRIA 158 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g--~~~~a~~~~~~m~~~~g~~p~~~~--~~~li~~~~~~g~~~ 158 (352)
+. ++++.+.+.|..++... -.+.+...+..| +.+-+ +.+.+. |..++... -.+-+...+..|+.+
T Consensus 120 ~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv----~~Ll~~-g~din~~d~~g~tpL~~A~~~~~~~ 190 (480)
T PHA03100 120 SY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL----KLLIDK-GVDINAKNRYGYTPLHIAVEKGNID 190 (480)
T ss_pred hH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH----HHHHHC-CCCcccccCCCCCHHHHHHHhCCHH
Confidence 43 34444445565554322 123444445555 44433 333343 55543221 123345556667666
Q ss_pred HHHHHHHh
Q 048142 159 KAEELIKN 166 (352)
Q Consensus 159 ~A~~~~~~ 166 (352)
-+.-+++.
T Consensus 191 iv~~Ll~~ 198 (480)
T PHA03100 191 VIKFLLDN 198 (480)
T ss_pred HHHHHHHc
Confidence 55555543
No 345
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=70.66 E-value=60 Score=27.06 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=62.6
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhHHH--HHHHHHhccCCHHHHHHHHHHhhHhcCCCCChh
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP---DAITFV--GVLVACSHAGLVDERISHFNLMSEKYGIRPSIE 142 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 142 (352)
+...-+|.||--|.-...+.+|-+.|.. +.|+.| |..++. .-|......|++++|++...+.... -+.-|..
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRE 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchh
Confidence 3445577787777666667777777744 556666 333332 4567778899999999888877654 4444543
Q ss_pred HHHHHHH----HHHHcCCHHHHHHHHHhC
Q 048142 143 HYGCLVY----ILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 143 ~~~~li~----~~~~~g~~~~A~~~~~~m 167 (352)
.+-.|.. -+.+.|..++|+++.+.-
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333322 246788899999888753
No 346
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.08 E-value=53 Score=26.96 Aligned_cols=83 Identities=14% Similarity=0.073 Sum_probs=55.1
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHH
Q 048142 2 VEDSACEEALLLFREVQHKGLTGD-----KVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTAL 76 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~l 76 (352)
..+|++++|..-|.+.... ++|. ...|..-..++.+++.++.|..--...++.+. ||+--
T Consensus 106 F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p--------------ty~kA 170 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP--------------TYEKA 170 (271)
T ss_pred hhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc--------------hhHHH
Confidence 4578888888888888764 2222 23355555667788888888877777776553 34433
Q ss_pred H----HHHHhcCChHHHHHHHHHHHHc
Q 048142 77 I----VVLAMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 77 i----~~~~~~g~~~~A~~~~~~m~~~ 99 (352)
| .+|.+...+++|++=|.++.+.
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2 3566677777777777777764
No 347
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=69.80 E-value=78 Score=27.83 Aligned_cols=110 Identities=14% Similarity=-0.064 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhHhcCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048142 121 VDERISHFNLMSEKYGI---RPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQ 197 (352)
Q Consensus 121 ~~~a~~~~~~m~~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 197 (352)
.++|.+.|+.......- ..++.....++....+.|..++-..+++.....++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 46788888888763111 345666667777777888877666666666545678888889999999999998889988
Q ss_pred HHHHhC-CCCcchHHHHHHHHhhcCCh--HHHHHHHH
Q 048142 198 QLLELL-PDNGGSYVILSNRYSSSRKW--KKVKRIRE 231 (352)
Q Consensus 198 ~~~~~~-~~~~~~~~~li~~~~~~g~~--~~a~~~~~ 231 (352)
...... .+.... ..++.++...+.. +.+.+.+.
T Consensus 226 ~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 887742 223333 3344444433333 55555543
No 348
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.71 E-value=1.2e+02 Score=29.17 Aligned_cols=183 Identities=14% Similarity=0.036 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--C
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGV--K 102 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~ 102 (352)
+..+|..-++--...|+.+.+.-+|+...---- .=...|--.+.-....|+.+-|..++..-.+--+ .
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA----------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCA----------LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh----------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 467888888888899999999988887654211 1123566666666667999988888876655422 2
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCh-hHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCcHHHHH
Q 048142 103 PDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSI-EHYGCLVYILGRAGRIAKAE---ELIKNM-PMALDHFVLG 177 (352)
Q Consensus 103 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~ 177 (352)
|....+.+.+ +-..|+++.|..+++...++ . |+. ..-.--+....+.|..+.+. .++... ..+-+..+.+
T Consensus 366 ~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~ 440 (577)
T KOG1258|consen 366 PIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILE 440 (577)
T ss_pred cHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhH
Confidence 2333333333 23478999999999999885 3 653 22233455667888888888 444443 2222222222
Q ss_pred HHHH-----HHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCC
Q 048142 178 GLLG-----ACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRK 222 (352)
Q Consensus 178 ~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 222 (352)
.+.- .+.-.++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 441 ~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 441 KLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 2222 34556889999999999999999999999999988766653
No 349
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.26 E-value=14 Score=19.19 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 048142 187 DNLEAAERAAQQLLELLPDNGGSYVILSN 215 (352)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 215 (352)
|+.+.|..+|+++....|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677788888877777766666665544
No 350
>PF13934 ELYS: Nuclear pore complex assembly
Probab=66.46 E-value=77 Score=26.53 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=24.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048142 147 LVYILGRAGRIAKAEELIKNMPMALD-HFVLGGLLGACRIHDNLEAAERAAQQL 199 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (352)
++.++...|+.+.|+.+++.++-.++ ......++.. ..++.+.+|..+-+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 55555556666666666666532221 2222222222 4445566555554443
No 351
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.87 E-value=14 Score=32.18 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=34.0
Q ss_pred CcHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 048142 68 KDVMT-LTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVL 112 (352)
Q Consensus 68 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 112 (352)
|+..+ ||..|..-.+.||+++|+.++++.++.|+.--..||-..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 44444 6788999999999999999999999988775555554433
No 352
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.80 E-value=89 Score=27.02 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=95.6
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCCH---
Q 048142 37 THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR--------GVKPDA--- 105 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~--- 105 (352)
.+.|+++.|...+.+........++..... --...||.-...+.+..++++|..++++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~-La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE-LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH-HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 578999999999998876431111100000 11234665555555544888888887776432 233443
Q ss_pred --hHHHHHHHHHhccCCH---HHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCcHHHHHH
Q 048142 106 --ITFVGVLVACSHAGLV---DERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM--PMALDHFVLGG 178 (352)
Q Consensus 106 --~t~~~ll~~~~~~g~~---~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 178 (352)
.+...++.++...+.. ++|..+++.+...+|-.|.+ +-.-+..+.+.++.+++.+++.+| .+.-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~--~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV--FLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH--HHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHH
Confidence 3456677777776654 56777888887765544544 434566666689999999999988 22213445555
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHH
Q 048142 179 LLGAC---RIHDNLEAAERAAQQLL 200 (352)
Q Consensus 179 li~~~---~~~g~~~~a~~~~~~~~ 200 (352)
++..+ .... ...|...+..+.
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l 184 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLL 184 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHH
Confidence 55544 4433 345555555543
No 353
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.88 E-value=1.1e+02 Score=28.80 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 88 KALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 88 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
....+|+..... ..-|..-|..-+..|-+.+.+.+...+|.+|...++..|+...|.+. --|..+-+++.|..+|.+-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 344455555443 44577777777776666666777888888887776777776655442 2344444577777777654
Q ss_pred -CCCCc-HHHHHH
Q 048142 168 -PMALD-HFVLGG 178 (352)
Q Consensus 168 -~~~p~-~~~~~~ 178 (352)
.+.|+ +..|-.
T Consensus 167 LR~npdsp~Lw~e 179 (568)
T KOG2396|consen 167 LRFNPDSPKLWKE 179 (568)
T ss_pred hhcCCCChHHHHH
Confidence 55665 444433
No 354
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.61 E-value=36 Score=27.54 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=33.6
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 117 HAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 117 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
...+.+......+...+.....|++.+|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555544444444443355677777777777788888888887777766
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.08 E-value=99 Score=26.94 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=71.3
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCC-HhHH
Q 048142 33 LLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQI---RGVKPD-AITF 108 (352)
Q Consensus 33 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~-~~t~ 108 (352)
.+-..+.+++++|...+.++...|...+..+.| ....+-..+...|.+.|++..--+......+ .=-+|- ....
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n--EqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN--EQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh--HHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 344456677788888888887777764433222 2234455566777777776655444433222 111222 2234
Q ss_pred HHHHHHHhc-cCCHHHHHHHHHHhhHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 109 VGVLVACSH-AGLVDERISHFNLMSEKYGIRP-----SIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 109 ~~ll~~~~~-~g~~~~a~~~~~~m~~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
.+|+.-+.. ...++..+.+.....+- .... ....-.-+|..+-+.|.+.+|+.+...+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iew-A~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEW-ADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 455555543 33455555544444331 1111 1122235778889999999998876543
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.78 E-value=52 Score=23.59 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=18.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhh
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMS 132 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 132 (352)
..|++++|..+.+.+ ..||...|.+|-. .+.|..++...-+.+|.
T Consensus 51 NrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 51 NRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred ccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 444555554444333 3444444443322 23444444444444443
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.75 E-value=1e+02 Score=26.90 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=31.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH-------HHHHHHHhccCCHHHH
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGVKPDAITF-------VGVLVACSHAGLVDER 124 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~~~~~~g~~~~a 124 (352)
+.+-..+.+++++|+..+.+....|+..|..+. ..+...|...|+...-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 445566778888888888888888877665443 3344455555554433
No 358
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.33 E-value=92 Score=26.31 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=11.2
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 048142 184 RIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~ 201 (352)
+..+++.+|+++|+++..
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566677777776654
No 359
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.15 E-value=64 Score=24.11 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048142 25 DKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYE 95 (352)
Q Consensus 25 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~ 95 (352)
|..-|..+=-.|+..-+ .+.++|..|...|+-. .-...|..-...+.+.|++++|.++|+.
T Consensus 64 nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~--------~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 64 NDERYLKIWIKYADLSS--DPREIFKFLYSKGIGT--------KLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp T-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTST--------TBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444444444444333 8999999999988764 3456788889999999999999999975
No 360
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.85 E-value=59 Score=23.59 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 048142 41 ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGL 120 (352)
Q Consensus 41 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 120 (352)
..++|..|.+.+...+-. ....--.-+..+...|++++|+ . . -.....||...|.+|- -.+.|.
T Consensus 21 cH~EA~tIa~wL~~~~~~----------~E~v~lIr~~sLmNrG~Yq~AL--l-~-~~~~~~pdL~p~~AL~--a~klGL 84 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM----------EEVVALIRLSSLMNRGDYQEAL--L-L-PQCHCYPDLEPWAALC--AWKLGL 84 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT----------HHHHHHHHHHHHHHTT-HHHHH--H-H-HTTS--GGGHHHHHHH--HHHCT-
T ss_pred HHHHHHHHHHHHHhCCcH----------HHHHHHHHHHHHHhhHHHHHHH--H-h-cccCCCccHHHHHHHH--HHhhcc
Confidence 456666666666665432 1111122234445666777661 1 1 1122456666655443 235666
Q ss_pred HHHHHHHHHHhhH
Q 048142 121 VDERISHFNLMSE 133 (352)
Q Consensus 121 ~~~a~~~~~~m~~ 133 (352)
.+++...+.++..
T Consensus 85 ~~~~e~~l~rla~ 97 (116)
T PF09477_consen 85 ASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665544
No 361
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=61.54 E-value=87 Score=25.45 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=13.3
Q ss_pred hhcCChHHHHHHHHHHHh
Q 048142 218 SSSRKWKKVKRIRELMAE 235 (352)
Q Consensus 218 ~~~g~~~~a~~~~~~m~~ 235 (352)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456888888888887753
No 362
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.27 E-value=56 Score=23.68 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC
Q 048142 144 YGCLVYILGRAGRIAKAEELIKNMP 168 (352)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m~ 168 (352)
|..|+..|...|..++|++++.+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 6677777777777777777777763
No 363
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.26 E-value=20 Score=21.51 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=26.4
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLA 35 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 35 (352)
+.|-..++..++++|...|+..+...|..++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 467778888889999888988888888777653
No 364
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.05 E-value=86 Score=25.21 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCH-hHHHHHHHHHhc
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIR-----GVKPDA-ITFVGVLVACSH 117 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~-~t~~~ll~~~~~ 117 (352)
.-|..-+.-+++-....++.+++++.... .+.|+- .++-.+-.++..
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34555555555544444444444433221 155653 455555555543
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.92 E-value=59 Score=24.42 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=30.5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Q 048142 168 PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILS 214 (352)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 214 (352)
.+.|++.....-+.+|.+.+|+..|.++|+-++...++....|-.++
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45677777777777777777777777777777665444433454433
No 366
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.53 E-value=21 Score=22.07 Aligned_cols=30 Identities=33% Similarity=0.314 Sum_probs=23.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 048142 179 LLGACRIHDNLEAAERAAQQLLELLPDNGG 208 (352)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (352)
+.-++.+.|++++|.+..+.+++..|.|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 445788999999999999999999888753
No 367
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.94 E-value=78 Score=26.93 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=66.2
Q ss_pred HHHHHcCCHHHHHHHHHhC---------CCCCcHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 048142 149 YILGRAGRIAKAEELIKNM---------PMALDHFVL-----------GGLLGACRIHDNLEAAERAAQQLLELLPDNGG 208 (352)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~-----------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (352)
+-+.+.|++.+|..-|.+. ..+|...-| -++-.++...|++-++++--.+++...|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3466778888887776654 345555444 22334556778888999999999999999999
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 048142 209 SYVILSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
.|-.-..+.+..-+..+|..=|....+.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 9988888888888899998888877654
No 368
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.88 E-value=1.5e+02 Score=27.49 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 118 AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 118 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
.++.+.|..++..|.+. |..|....-..++.++-.-|
T Consensus 243 gsd~~aal~~l~~~l~~-G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEA-GEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhhc
Confidence 35666666666666664 66665544444444444333
No 369
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.56 E-value=96 Score=25.31 Aligned_cols=126 Identities=11% Similarity=0.006 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHH--HHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHH-
Q 048142 70 VMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVG--VLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGC- 146 (352)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~- 146 (352)
...|..++.... .+.+ +.....+++....-+-...++.+ +...+...+++++|...++..... |....+..
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l 127 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHH
Confidence 344666665553 2222 44444555544321111112222 234455566666666666555421 22222222
Q ss_pred ----HHHHHHHcCCHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 048142 147 ----LVYILGRAGRIAKAEELIKNMPMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLEL 202 (352)
Q Consensus 147 ----li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (352)
|.......|.+|+|+..++... .++ ......--..+...|+-++|...|++....
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 2334555666666666665542 111 111111123556666666666666665554
No 370
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.48 E-value=1.3e+02 Score=26.60 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 91 EYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 91 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
++++.|...++.|.-++|.-+.-.+++.=.+.++..+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3445555555555555555444445555555555555555543
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.01 E-value=47 Score=21.22 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
-.-..|.+|...|++++|.+..+++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344567778888888888887777654
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.38 E-value=71 Score=25.75 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhHhcCCCCC-hhHH-----HHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 048142 121 VDERISHFNLMSEKYGIRPS-IEHY-----GCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHD 187 (352)
Q Consensus 121 ~~~a~~~~~~m~~~~g~~p~-~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 187 (352)
++.|..+++.+.+....+-+ ...- -..+..|.+.|.+++|.+++++.-..|+.......+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 45666777777664221101 1111 1234568889999999999998833666666555555554443
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.31 E-value=36 Score=23.10 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=36.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPD--AITFVGVLVACSHAGLVDERISHF 128 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~ 128 (352)
...+.++|+..+....+.-..|. -.++..++.+++..|++.+++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999887643333 246788999999999999887654
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.27 E-value=1.3e+02 Score=26.03 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=49.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC--------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCc----chHHH
Q 048142 147 LVYILGRAGRIAKAEELIKNM--------PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLEL--LPDNG----GSYVI 212 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~ 212 (352)
+|..+.+.|++++.+..+.++ .-.-+..+.|+++.--....+.+.-..+++.-++. +..|. .|-..
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 444555566666666555554 11234455566666555555555555555543321 11222 23346
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhc
Q 048142 213 LSNRYSSSRKWKKVKRIRELMAER 236 (352)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~m~~~ 236 (352)
|...|...|.+....+++.++...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777543
No 375
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.76 E-value=23 Score=30.87 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=32.8
Q ss_pred CCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 048142 21 GLTGDKVTM-VSLLLACTHLGALEVGMWLHPYIMKKNIE 58 (352)
Q Consensus 21 g~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 58 (352)
.+.||..+| +..|....+.||+++|+.++++.++.|..
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345677665 58999999999999999999999999986
No 376
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.97 E-value=1.4e+02 Score=26.23 Aligned_cols=115 Identities=20% Similarity=0.166 Sum_probs=53.5
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh-C--CCCCcH----
Q 048142 101 VKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKN-M--PMALDH---- 173 (352)
Q Consensus 101 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m--~~~p~~---- 173 (352)
++|+-.+--.....+..+|.-+-..-.-.++.. | .-...-..|..-..+...+++.....++ | ..-|+.
T Consensus 219 fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~--~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ 294 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE--G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIG 294 (412)
T ss_pred cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH--H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEe
Confidence 577777766666666666544332221111111 0 0111122334444445556665554433 3 122443
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHH
Q 048142 174 FVLGGLLGACRIHDN-LEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVK 227 (352)
Q Consensus 174 ~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 227 (352)
+.|..++++--=+.+ ---|.+.++.+ .+|..|+.+++..|+.+-.+
T Consensus 295 ivWs~iMsaveWnKkeelva~qalrhl--------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 295 IVWSGIMSAVEWNKKEELVAEQALRHL--------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eeHhhhhHHHhhchHHHHHHHHHHHHH--------HhhhHHHHHHhcCChHHHHH
Confidence 456666654322211 11122222222 46777888888888776554
No 377
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.78 E-value=43 Score=20.09 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=18.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLV 113 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 113 (352)
+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555566666666666666655555555443
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.02 E-value=48 Score=31.84 Aligned_cols=100 Identities=17% Similarity=0.054 Sum_probs=68.9
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHHhcCCHHH
Q 048142 116 SHAGLVDERISHFNLMSEKYGIRP--SIEHYGCLVYILGRAGRIAKAEELIKNM-PMA-LDHFVLGGLLGACRIHDNLEA 191 (352)
Q Consensus 116 ~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~ 191 (352)
.-.|+...|...+..... ..| .-+..-.|.+.+.+.|...+|-.++.+. .+. ..+.++-.+-+++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 346788888877766543 344 2233345666677777888888877654 222 235566777788888899999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHh
Q 048142 192 AERAAQQLLELLPDNGGSYVILSNRYS 218 (352)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~li~~~~ 218 (352)
|++.|+...+..|.+...-+.|...-|
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999988888888877777665544
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.40 E-value=1.7e+02 Score=26.69 Aligned_cols=56 Identities=9% Similarity=-0.058 Sum_probs=40.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHhc--cCCHHHHHHHHHHhhHh
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDAI--TFVGVLVACSH--AGLVDERISHFNLMSEK 134 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~--~g~~~~a~~~~~~m~~~ 134 (352)
..+...+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445789999999999999987 666554 34455555543 56788899988887764
No 380
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.35 E-value=48 Score=20.48 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=21.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGV 111 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 111 (352)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34566777888888888777776 56665444443
No 381
>PRK10941 hypothetical protein; Provisional
Probab=54.09 E-value=1e+02 Score=26.66 Aligned_cols=63 Identities=19% Similarity=0.089 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 175 VLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
..+++-.+|.+.++++.|.++.+.+....|.++.-+---.-.|.+.|.+..|..=++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 346666788889999999999999988888887766666677888888888888777765543
No 382
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.34 E-value=1.2e+02 Score=29.89 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=55.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCCC
Q 048142 31 SLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGN------KALEYFYEMQIRGVKPD 104 (352)
Q Consensus 31 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~ 104 (352)
+|+.+|...|++..+.++++......-. +. .-...||..|+...+.|.++ .|.+++++.. +.-|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~-~k------~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d 102 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG-DK------ILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGD 102 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC-Ce------eehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCc
Confidence 8999999999999999999988765321 11 33457888999999998754 3444444433 5558
Q ss_pred HhHHHHHHHHHhc
Q 048142 105 AITFVGVLVACSH 117 (352)
Q Consensus 105 ~~t~~~ll~~~~~ 117 (352)
..||..|+.+-..
T Consensus 103 ~~t~all~~~sln 115 (1117)
T COG5108 103 SLTYALLCQASLN 115 (1117)
T ss_pred chHHHHHHHhhcC
Confidence 8888887776543
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.94 E-value=32 Score=22.01 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=18.1
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 048142 104 DAITFVGVLVACSHAGLVDERISHFNLMSE 133 (352)
Q Consensus 104 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 133 (352)
|-.-.-.+|.++...|++++|.++.+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344566677777777777776666654
No 384
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.63 E-value=96 Score=23.17 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=30.7
Q ss_pred HHHHHHHHHHH--hCCCCcchHHHHHHHHhhcCChHHHHHHHHH
Q 048142 191 AAERAAQQLLE--LLPDNGGSYVILSNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 191 ~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (352)
.+.++|+.|.. .+..-+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888765 3455566777888888888888888888764
No 385
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.03 E-value=1.4e+02 Score=24.47 Aligned_cols=125 Identities=14% Similarity=0.036 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHH-----HHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHH
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGC-----LVYILGRAGRIAKAEELIKNMPMALDHFVLGGLL 180 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li 180 (352)
..|..++.... .+.. +.....+.+... +...+|.. +...+..+|++++|..-++..--.|....+..++
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~----n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQA----NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhh----ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHH
Confidence 44555555543 3333 444455555543 22333433 3456888999999999998763244455555544
Q ss_pred -----HHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 048142 181 -----GACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERN 237 (352)
Q Consensus 181 -----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 237 (352)
......|.+|+|...++...+.. -.......-.+.+...|+-++|..-|++-.+.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 56778899999998877665421 111223344578899999999999999988876
No 386
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.98 E-value=15 Score=27.81 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=25.8
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 116 SHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 116 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
...|.-.+|..+|..|.++ |-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~-G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLER-GNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhC-CCCCcc--HHHHHHH
Confidence 3456778899999999998 999986 7777764
No 387
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=50.74 E-value=1.9e+02 Score=26.18 Aligned_cols=126 Identities=17% Similarity=0.037 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHhHHHHHHHHHhccCCHHHHHHHHHHhh---HhcCCCCChhHHH
Q 048142 74 TALIVVLAMCGQGNKALEYFYEMQIRGV-----KPDAITFVGVLVACSHAGLVDERISHFNLMS---EKYGIRPSIEHYG 145 (352)
Q Consensus 74 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~---~~~g~~p~~~~~~ 145 (352)
-+|-.++...+.++++++.|+...+--. ...-..+..|-..|.+..+.++|.-+..... +.+++.--..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3466777778889999999998765211 1123567888888889999998876554332 2335443333344
Q ss_pred HH-----HHHHHHcCCHHHHHHHHHhC-------CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048142 146 CL-----VYILGRAGRIAKAEELIKNM-------PMALD-HFVLGGLLGACRIHDNLEAAERAAQQL 199 (352)
Q Consensus 146 ~l-----i~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (352)
.+ .-+|...|++-+|.+.-++. |.+|. ......+...|...|+.|.|..-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33 34566778877777766654 54432 344455667888999999988777763
No 388
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.59 E-value=1.4e+02 Score=25.86 Aligned_cols=112 Identities=13% Similarity=0.003 Sum_probs=69.2
Q ss_pred hcCChHHHHHHHHHHHHc-----CCCCCHhH--------HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC--ChhHHHH
Q 048142 82 MCGQGNKALEYFYEMQIR-----GVKPDAIT--------FVGVLVACSHAGLVDERISHFNLMSEKYGIRP--SIEHYGC 146 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~-----g~~p~~~t--------~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~ 146 (352)
-..|+..|++..++-.+. ....+..+ ...=|.+++..+++.++....-+- |+..- -+.....
T Consensus 47 V~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqy---Yq~pEklPpkIleL 123 (309)
T PF07163_consen 47 VHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQY---YQVPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHH---hcCcccCCHHHHHH
Confidence 356667777666655432 01111111 223478888999998887654332 33322 2344556
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 048142 147 LVYILGRAGRIAKAEELIKNM---PMALDHFVLGGLLGAC-----RIHDNLEAAERAA 196 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~-----~~~g~~~~a~~~~ 196 (352)
.|-.|.|.+....+.++-..- +.+-+...|.+++..| .-.|.+++|+++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 677899999999888886654 3344455677766544 5679999999886
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.36 E-value=2.3e+02 Score=27.00 Aligned_cols=162 Identities=14% Similarity=0.072 Sum_probs=114.9
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHh
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAM 82 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~ 82 (352)
++-...-...+..+|...| -+...|..++..|... .-+.-..+++.+.+..+ .|++.-.-|..-|-+
T Consensus 78 ~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df----------nDvv~~ReLa~~yEk 144 (711)
T COG1747 78 DNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF----------NDVVIGRELADKYEK 144 (711)
T ss_pred cchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc----------hhHHHHHHHHHHHHH
Confidence 3444555666777787754 4677889999999888 44777889999998877 466666666676766
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH------hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDA------ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
++.+.+...|.+.... +.|-. ..|.-|...- ..+.+....+...+....|.......+.-+-.-|....+
T Consensus 145 -ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 -IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred -hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 8899999999998765 33311 2354444321 357788888888888876777777788888888999999
Q ss_pred HHHHHHHHHhC--CCCCcHHHHHHHHH
Q 048142 157 IAKAEELIKNM--PMALDHFVLGGLLG 181 (352)
Q Consensus 157 ~~~A~~~~~~m--~~~p~~~~~~~li~ 181 (352)
+++|++++..+ -.+.|...-..++.
T Consensus 221 ~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 221 WTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 99999999866 22334444444443
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.02 E-value=39 Score=34.00 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=67.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEE 162 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 162 (352)
+.++++.+.+.+.-.--| .++|..+.+.|..+-|+.+.+.=..+++ ....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF~-------------LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRFE-------------LALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhee-------------eehhcCCHHHHHH
Confidence 456777766554432222 2566677788888888766554443322 2446799999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 163 LIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 163 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
.-.++. |..+|..|.....+.|+.+-|+-.|++.+.
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 887775 678899999999999999999888888765
No 391
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.82 E-value=2.1e+02 Score=25.97 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC----------CC-----------------CC-cHHHHHHH---HHHHHhcCCH
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNM----------PM-----------------AL-DHFVLGGL---LGACRIHDNL 189 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~-----------------~p-~~~~~~~l---i~~~~~~g~~ 189 (352)
+.+.-.+-..+...|+.+.|.+++++. .+ .+ |..-|.++ |..+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 344444555566777777776665543 11 11 33445444 4577899999
Q ss_pred HHHHHHHHHHHHhCCC-CcchHHHHHHHHh-hcCChHHHHHHHHHHHh
Q 048142 190 EAAERAAQQLLELLPD-NGGSYVILSNRYS-SSRKWKKVKRIRELMAE 235 (352)
Q Consensus 190 ~~a~~~~~~~~~~~~~-~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 235 (352)
..|.+..+.+...+|. |+..--.+|+.|+ ++++++--.++.+....
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999999998 8888888899884 67788878888877654
No 392
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.29 E-value=2e+02 Score=25.66 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=35.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 111 VLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 111 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
|.-+-.+.|++.+|.+.|+++.++..+..-......||.++....-+.+...++-+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445688999999988888775332222334556777777666666666665443
No 393
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.16 E-value=1.7e+02 Score=24.83 Aligned_cols=112 Identities=10% Similarity=0.105 Sum_probs=68.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHH-HHHHHHHcCCHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAIT-FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGC-LVYILGRAGRIAK 159 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~-li~~~~~~g~~~~ 159 (352)
...+++.|+..|.+... +.|+..+ |+.=+-++.+..+++.+..=-...+ .+.|+..--.. +-..+.....+++
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccccH
Confidence 45567778876665554 6777644 5566667777777777665444443 45665443332 3344555666777
Q ss_pred HHHHHHhC-------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048142 160 AEELIKNM-------PMALDHFVLGGLLGACRIHDNLEAAERAAQQ 198 (352)
Q Consensus 160 A~~~~~~m-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (352)
|..++.+. ++.|....++.|..+--..-...+..++.++
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77766654 5556667777777766555555566555544
No 394
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.12 E-value=1.1e+02 Score=22.35 Aligned_cols=77 Identities=14% Similarity=-0.076 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048142 120 LVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQL 199 (352)
Q Consensus 120 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (352)
..++|..+.+-+... +. ....+--+-+..+.+.|++++|+..=.. ...||...|-+|- -.+.|..+++..-+.++
T Consensus 21 cH~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEALLLPQC-HCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHHHHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHHHHhccc-CCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 455666666665543 22 1122222223345566777777222222 2346666664433 34556666666655555
Q ss_pred HH
Q 048142 200 LE 201 (352)
Q Consensus 200 ~~ 201 (352)
..
T Consensus 96 a~ 97 (116)
T PF09477_consen 96 AS 97 (116)
T ss_dssp CT
T ss_pred Hh
Confidence 43
No 395
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.78 E-value=56 Score=21.21 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhc
Q 048142 22 LTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMC 83 (352)
Q Consensus 22 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~ 83 (352)
+.|+...++.++...++-.-.+.++..+++..+.|. -+..+|---++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~----------I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS----------IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----------S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHH
Confidence 456777889999999999999999999999999886 4556777777766653
No 396
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.15 E-value=65 Score=20.63 Aligned_cols=47 Identities=13% Similarity=0.030 Sum_probs=32.5
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hccCChHHHHHHH
Q 048142 3 EDSACEEALLLFREVQHKGLTGDKVTMVSLLLAC-----THLGALEVGMWLH 49 (352)
Q Consensus 3 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-----~~~g~~~~a~~~~ 49 (352)
..|++=+|-++++++......|....+..+|... .+.|+.+.|..++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 4689999999999998754445566666777654 4567777776653
No 397
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.63 E-value=3.2e+02 Score=27.52 Aligned_cols=166 Identities=16% Similarity=0.234 Sum_probs=97.5
Q ss_pred ccCCChhHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHhccCChHHHHHHHHHHHHc-C-CCCCccccccCCc
Q 048142 2 VEDSACEEALLLFREVQHKGLTGDKV----------TMVSLLLACTHLGALEVGMWLHPYIMKK-N-IEVDVGLGMALKD 69 (352)
Q Consensus 2 ~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~~~~~~~~~l~~ 69 (352)
....+++..+++.+.+++ -||.. .|.-.++---+-|+-++|+.+.-.+.+. | +. ||
T Consensus 212 RDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va---------pD 279 (1226)
T KOG4279|consen 212 RDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA---------PD 279 (1226)
T ss_pred ccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC---------Cc
Confidence 344567777778777776 24322 2333444445667888888877766653 3 23 44
Q ss_pred HH-----HHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC
Q 048142 70 VM-----TLTALI--VVLAMCGQGNKALEYFYEMQIRGVKPDAIT---FVGVLVACSHAGLVDERISHFNLMSEKYGIRP 139 (352)
Q Consensus 70 ~~-----~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p 139 (352)
.. .|--|. +.|-..+..+.|+++|++.-+ +.|+.++ +.+|+.+-.+ .++...+ +..- |+
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~E----lq~I-gm-- 348 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLE----LQQI-GM-- 348 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHH----HHHH-HH--
Confidence 32 233332 445556677788888888766 5776654 4444444321 1222211 2221 22
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
.|-..+++.|.+++-.++|+ +.+| +.+-.-.+++.+|.+..+.|.+..||.
T Consensus 349 ------kLn~LlgrKG~leklq~YWd-------V~~y---~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 349 ------KLNSLLGRKGALEKLQEYWD-------VATY---FEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred ------HHHHHhhccchHHHHHHHHh-------HHHh---hhhhhhccCHHHHHHHHHHHhccCCce
Confidence 23334678888888877774 3333 444556778899999999998887775
No 398
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.37 E-value=5.2e+02 Score=29.87 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=69.9
Q ss_pred HHHHHHHhcCChHHHHHHHHH----HHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYE----MQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYI 150 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 150 (352)
++..+-.+.+.+.+|+-.+++ +++.. -...-|..+...|+..+++|...-+...-. -.|+. + .-|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~sl--~-~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADPSL--Y-QQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCccH--H-HHHHH
Confidence 455566678889999999988 33221 122334455558888888888776665411 12232 2 23445
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHH
Q 048142 151 LGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERA 195 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~ 195 (352)
....|++++|...|+.+ +..|+ ...++-++......|.++..+-.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~ 1505 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILH 1505 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhh
Confidence 66789999999999988 55566 56666666555555555544443
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.25 E-value=1.3e+02 Score=29.55 Aligned_cols=48 Identities=10% Similarity=-0.031 Sum_probs=28.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHhccCCHH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIR--GVKPDAITFVGVLVACSHAGLVD 122 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~ 122 (352)
+|..+|..+|++..+..+++..... |-+.=...||.-|+...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 6667777777777777777766543 22222334566666666666543
No 400
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.12 E-value=85 Score=26.63 Aligned_cols=55 Identities=22% Similarity=0.096 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-------C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048142 145 GCLVYILGRAGRIAKAEELIKNM-------P-MALDHFVLGGLLGACRIHDNLEAAERAAQQL 199 (352)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (352)
-.|...|.+.|++++|.++|+.+ + ..+...+...+..++...|+.+....+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35667788888888888888877 1 1233455566667778888888777665554
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.12 E-value=99 Score=21.47 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=47.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHH
Q 048142 10 ALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKA 89 (352)
Q Consensus 10 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A 89 (352)
+-+++..+.+.|+- +..-...+-.+-...|+.+.|++++..+. .|.. .|...++++...|...-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~-------------aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG-------------WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc-------------HHHHHHHHHHHcCchhhh
Confidence 44566777777743 34444444444456789999999999999 7754 788999999888876655
Q ss_pred HH
Q 048142 90 LE 91 (352)
Q Consensus 90 ~~ 91 (352)
.+
T Consensus 86 ~e 87 (88)
T cd08819 86 RE 87 (88)
T ss_pred hc
Confidence 43
No 402
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.62 E-value=1.1e+02 Score=27.64 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=7.4
Q ss_pred CChHHHHHHHHHHHhcC
Q 048142 221 RKWKKVKRIRELMAERN 237 (352)
Q Consensus 221 g~~~~a~~~~~~m~~~g 237 (352)
+.-++|.+..-+|.+.|
T Consensus 330 a~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 330 ASAQEVEKYILQMIEDG 346 (422)
T ss_pred cchHHHHHHHHHHhccC
Confidence 44444444444444433
No 403
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.46 E-value=2.7e+02 Score=26.67 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=54.6
Q ss_pred HHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-cccc--cCCcHHHHHHHHHHHHhcC
Q 048142 9 EALLLFRE-VQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDV-GLGM--ALKDVMTLTALIVVLAMCG 84 (352)
Q Consensus 9 ~A~~~~~~-m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~--~l~~~~~~~~li~~~~~~g 84 (352)
+..+.+.+ +.+.|+..+......++.. ..|++..+...++.+...+-..+. .+.. ..+.......|++++ ..+
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~ 255 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQG 255 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcC
Confidence 33444444 3456877777776666655 358888888888887654311110 0000 003333444566665 457
Q ss_pred ChHHHHHHHHHHHHcCCCCC
Q 048142 85 QGNKALEYFYEMQIRGVKPD 104 (352)
Q Consensus 85 ~~~~A~~~~~~m~~~g~~p~ 104 (352)
+.++|+.+++++...|..|.
T Consensus 256 d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 256 DAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CHHHHHHHHHHHHHcCCCHH
Confidence 78888888888888776554
No 404
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.33 E-value=1.8e+02 Score=24.29 Aligned_cols=107 Identities=17% Similarity=0.084 Sum_probs=69.3
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 72 TLTALIVVLA--MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 72 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
.|...+.++. ..+++++|++.+..- .+.|+... -++.++...|+.+.|..+++.+.- ...+...-..++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 5677777765 467788888877322 23333222 477888889999999999888742 1223333344444
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 048142 150 ILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHD 187 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 187 (352)
. ..++.+.||..+-+.....-....+..++..+....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 667899999999888753222456777777666433
No 405
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.20 E-value=3.2e+02 Score=27.11 Aligned_cols=116 Identities=4% Similarity=-0.086 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHhhHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048142 119 GLVDERISHFNLMSEKYGIRPS--IEHYGCLVYILGRAGRIAKAEELIKNMP-MALDHFVLGGLLGACRIHDNLEAAERA 195 (352)
Q Consensus 119 g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~~~~~~g~~~~a~~~ 195 (352)
.+.+.|...+.......++.+. ..++..+.......+..++|...++... ...|...+.--+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 4557777777776554344332 2233344333333333666777777652 222444444455555588889888888
Q ss_pred HHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 196 AQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 196 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
+..|.........-.-=+.+++...|+.++|...|+.+.
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888754333333334456667677899999999888764
No 406
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=45.04 E-value=37 Score=22.65 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=28.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG 119 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 119 (352)
..++.+++.+++++....|..|.......+..+..+.|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46888899999999998888888877777776665544
No 407
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=44.81 E-value=47 Score=22.45 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=2.8
Q ss_pred HcCCCCCH
Q 048142 98 IRGVKPDA 105 (352)
Q Consensus 98 ~~g~~p~~ 105 (352)
+.|..|+.
T Consensus 47 ~~g~~~~~ 54 (89)
T PF12796_consen 47 ENGADINS 54 (89)
T ss_dssp HTTTCTT-
T ss_pred Hhcccccc
Confidence 34444433
No 408
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.73 E-value=2.9e+02 Score=26.47 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=55.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc---ccccc--CCcHHHHHHHHHHHHhcCChHHHHH
Q 048142 17 VQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDV---GLGMA--LKDVMTLTALIVVLAMCGQGNKALE 91 (352)
Q Consensus 17 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~--l~~~~~~~~li~~~~~~g~~~~A~~ 91 (352)
+...|+..+......++.. ..|++..|..+++++...|- ..+ .+... .++......|+.+... ++.+.++.
T Consensus 191 l~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~-~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~ 266 (509)
T PRK14958 191 LKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGN-GKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLG 266 (509)
T ss_pred HHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCC-CCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHH
Confidence 3456777777776666655 36899999999988776541 111 01100 0444455556666554 88899999
Q ss_pred HHHHHHHcCCCCCH
Q 048142 92 YFYEMQIRGVKPDA 105 (352)
Q Consensus 92 ~~~~m~~~g~~p~~ 105 (352)
++++|...|..|..
T Consensus 267 ~~~~l~~~g~~~~~ 280 (509)
T PRK14958 267 CVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHcCCCHHH
Confidence 99999998887754
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.20 E-value=1.3e+02 Score=23.14 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=21.5
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 048142 93 FYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 93 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 134 (352)
.+.+++.|++++..= ..++..+...+..-.|..+++++.+.
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE 49 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 334445555554322 24555555555556666666666654
No 410
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.11 E-value=1.7e+02 Score=23.65 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHcCCCCCH--hH-----HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 86 GNKALEYFYEMQIRGVKPDA--IT-----FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 86 ~~~A~~~~~~m~~~g~~p~~--~t-----~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
++.|+.+|+.+.+.--.|.. .. --..+..|.+.|.+++|.+++++... .|+....-..+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHHcc
Confidence 56899999888776333311 11 22346678999999999999999864 455555555555555443
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.91 E-value=1.3e+02 Score=25.59 Aligned_cols=77 Identities=8% Similarity=-0.126 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 158 AKAEELIKNMPMAL-DHFVLGGLLGACRIHDNLEAAERAAQQLLELL------PDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 158 ~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
+.|.+.|...+... -...---|..-|...|++++|.++|+.+.... .....+...+..++...|+.++...+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34555555554221 12223345567899999999999999985431 223345556777788889998888776
Q ss_pred HHHH
Q 048142 231 ELMA 234 (352)
Q Consensus 231 ~~m~ 234 (352)
-+|.
T Consensus 242 leLl 245 (247)
T PF11817_consen 242 LELL 245 (247)
T ss_pred HHHh
Confidence 5553
No 412
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.26 E-value=2e+02 Score=26.30 Aligned_cols=143 Identities=11% Similarity=0.018 Sum_probs=69.9
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHH
Q 048142 37 THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAI--TFVGVLVA 114 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~ 114 (352)
++.|+.+.+ +.+.+.|..++. .+..-++ .+...++.|+.+ +.+.+.+.|..|+.. ...+.+..
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~------~~~~g~t-pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~ 74 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNF------EIYDGIS-PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHD 74 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCc------cCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHH
Confidence 566776554 445567877554 2222233 334445667664 444555667666533 12234555
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCCHHHH
Q 048142 115 CSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFV--LGGLLGACRIHDNLEAA 192 (352)
Q Consensus 115 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~li~~~~~~g~~~~a 192 (352)
.+..|+.+.+..+++.-... .-..+.... +.+..-+..|+.+-+..+++. |..|+... -.+.+...+..|+.+..
T Consensus 75 A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~-tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 75 AVEEGDVKAVEELLDLGKFA-DDVFYKDGM-TPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred HHHCCCHHHHHHHHHcCCcc-cccccCCCC-CHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 66788888776665432110 001111111 233444567777655555543 33332111 12234444567776655
Q ss_pred HHHHH
Q 048142 193 ERAAQ 197 (352)
Q Consensus 193 ~~~~~ 197 (352)
..+++
T Consensus 152 ~~Ll~ 156 (413)
T PHA02875 152 ELLID 156 (413)
T ss_pred HHHHh
Confidence 55544
No 413
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.61 E-value=2.3e+02 Score=24.71 Aligned_cols=107 Identities=11% Similarity=0.126 Sum_probs=51.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA 154 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 154 (352)
.++..+.+..+..+..+.++.+.. ...-...+..+...|++..|.++..+..+. .. +...|+++=..-
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~-~l~~~~c~~~L~--- 170 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL--LE-ELKGYSCVRHLS--- 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HH-hcccchHHHHHh---
Confidence 344555555555555555555542 223334555556667777777766666543 11 112222221111
Q ss_pred CCHHHHHHH--------HHhCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048142 155 GRIAKAEEL--------IKNMPMALDHFVLGGLLGACRIHDNLEAAE 193 (352)
Q Consensus 155 g~~~~A~~~--------~~~m~~~p~~~~~~~li~~~~~~g~~~~a~ 193 (352)
.++++-... |.++-..-|+..|..++.+|...|+...+.
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 112222222 222222456777777777777777655443
No 414
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=41.74 E-value=3.3e+02 Score=26.32 Aligned_cols=131 Identities=12% Similarity=0.087 Sum_probs=88.3
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT-FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGC 146 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 146 (352)
-+-..|+++|.---...+.+.+...+..+... .|.-.- |.....-=.+.|..+.+..+|++-.. |++.+...|..
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~ 118 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLS 118 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHH
Confidence 45556777775554445555666666666653 455433 34444444578888888899988876 67777777777
Q ss_pred HHHHHH-HcCCHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 048142 147 LVYILG-RAGRIAKAEELIKNM----PMA-LDHFVLGGLLGACRIHDNLEAAERAAQQLLEL 202 (352)
Q Consensus 147 li~~~~-~~g~~~~A~~~~~~m----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (352)
....++ ..|+.+...+.|+.. |.. -+..-|...|.--...++++....++++.++.
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 665554 356677777777765 332 35677888888888888888888888888774
No 415
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.65 E-value=1.6e+02 Score=27.43 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048142 146 CLVYILGRAGRIAKAEELIKNMPM--ALDHFVLGGLLGACRIHDNLEAAERAAQ 197 (352)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~ 197 (352)
.|+.-|...|.+.+|...++++++ --..+.+.+++.+.-+.|+-.....+++
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk 567 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLK 567 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345555555666666666665532 1235555566655555555443333333
No 416
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.02 E-value=69 Score=23.06 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 048142 74 TALIVVLAMCGQGNKALEYFYEMQ 97 (352)
Q Consensus 74 ~~li~~~~~~g~~~~A~~~~~~m~ 97 (352)
..++..|...++.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456677788899999999998864
No 417
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.92 E-value=3.9e+02 Score=26.55 Aligned_cols=135 Identities=10% Similarity=-0.081 Sum_probs=62.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 82 MCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
+.|++..+..+-.++...-+ .....|-.+...+. ....++...++++-. +.+.....-...+..+.+.+++++..
T Consensus 45 ~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP---TLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHccCHHHHH
Confidence 45666666666655542211 12223333332222 223443333333221 22223333334455556666676666
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCCh
Q 048142 162 ELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 162 ~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 223 (352)
+++..-+ .+...-.....+....|+.++|....+.+--.....+...+.+++.+.+.|.+
T Consensus 120 ~~~~~~p--~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 120 AFSPEKP--KPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HhcCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCC
Confidence 6332222 23333444556666667766665555555433333444555555555544443
No 418
>PRK12798 chemotaxis protein; Reviewed
Probab=39.75 E-value=3.1e+02 Score=25.36 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=99.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCH----hHHHHHH
Q 048142 38 HLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL-AMCGQGNKALEYFYEMQIRGVKPDA----ITFVGVL 112 (352)
Q Consensus 38 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll 112 (352)
-.|+..++.+.+..+.....+ +....|-+|+.+- ....+..+|+++|++..- .-|-+ ....--+
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~---------~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi 192 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLP---------AELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSL 192 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcC---------chhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhh
Confidence 367788888888777665554 5566777777554 456788999999988765 23433 2233334
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH-HHHHHHHHc---CCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 048142 113 VACSHAGLVDERISHFNLMSEKYGIRPSIEHYG-CLVYILGRA---GRIAKAEELIKNMPMALDHFVLGGLLGACRIHDN 188 (352)
Q Consensus 113 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~-~li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~ 188 (352)
-.....|+.+++..+-..-..+|.-.|-..-|- .+...+.+. -..+.-.+++..|.-.--...|-.+...-...|+
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk 272 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGK 272 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCc
Confidence 556778888888777776666655555433322 223333333 3345555566666322235688888888888999
Q ss_pred HHHHHHHHHHHHHhC
Q 048142 189 LEAAERAAQQLLELL 203 (352)
Q Consensus 189 ~~~a~~~~~~~~~~~ 203 (352)
.+.|...-++.....
T Consensus 273 ~~lA~~As~~A~~L~ 287 (421)
T PRK12798 273 TELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999888888877653
No 419
>PRK09857 putative transposase; Provisional
Probab=39.17 E-value=2.5e+02 Score=24.58 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 176 LGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
+..++.-....++.++-.++++.+.+..|.......++..-+-+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445665556677777777888777665555555556677777777887888888999988888754
No 420
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=38.54 E-value=3.1e+02 Score=27.52 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=54.9
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CCccccccC--CcHHHHHHHHHHHHhcCChHHHHHHH
Q 048142 18 QHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE--VDVGLGMAL--KDVMTLTALIVVLAMCGQGNKALEYF 93 (352)
Q Consensus 18 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l--~~~~~~~~li~~~~~~g~~~~A~~~~ 93 (352)
.+.|+..+......++... .|++..+..+++++...|-. ....+...+ .+......|+.++.+ ++...++.++
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l 268 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKA 268 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3467777777777777654 69999999999887765411 000000000 333445566666654 7889999999
Q ss_pred HHHHHcCCCCCH
Q 048142 94 YEMQIRGVKPDA 105 (352)
Q Consensus 94 ~~m~~~g~~p~~ 105 (352)
++|...|+.+..
T Consensus 269 ~~L~~~G~d~~~ 280 (709)
T PRK08691 269 QEMAACAVGFDN 280 (709)
T ss_pred HHHHHhCCCHHH
Confidence 999988876543
No 421
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.79 E-value=2.1e+02 Score=22.81 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=56.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC----CCC-cHHHHHHHHHH
Q 048142 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMP----MAL-DHFVLGGLLGA 182 (352)
Q Consensus 108 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p-~~~~~~~li~~ 182 (352)
+..++..-.+...+..+..++++..--+. .-.-|.-+.+.|+++.+...|.+.. ... ...++..+
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~flF~-------LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v--- 129 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRFLFN-------LPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV--- 129 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH---
Confidence 33344443444444555555544432211 1234555667788888777776661 011 22333322
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEE
Q 048142 183 CRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILI 247 (352)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 247 (352)
+.+++.+.+.+.. ..|..|.+.- ...++..++.+.+.+-+..+||.++++
T Consensus 130 ------~~eve~ii~~~r~------~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 130 ------WSEVEKIIEEFRE------KLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred ------HHHHHHHHHHHHH------HHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 2233333333222 1111111111 456677777788888888888877654
No 422
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.47 E-value=1.4e+02 Score=20.74 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048142 89 ALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAE 161 (352)
Q Consensus 89 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 161 (352)
+-+++..+.+.|+- +..-...+-.+-...|+.+.|.+++..+. + .+..|...++++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-----g~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q-----KEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-----CCcHHHHHHHHHHHcCchhhhh
Confidence 33455555555432 22222222222234466666666666665 3 3334556666666666554443
No 423
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.08 E-value=97 Score=20.10 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACS 116 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 116 (352)
|+...++.|+..+++..-.++++..+.+..+.|. .+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4445677777777777777777777777777764 24455554444444
No 424
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.54 E-value=2e+02 Score=22.13 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 048142 47 WLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG 119 (352)
Q Consensus 47 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 119 (352)
++...+.+.|+.+.. -=..++..+...++.-.|.++++++.+.+...+..|-=.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~----------qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTP----------QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCH----------HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 455566778876433 234577778888888999999999999876666555333444555544
No 425
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.90 E-value=2.4e+02 Score=23.01 Aligned_cols=19 Identities=16% Similarity=-0.088 Sum_probs=11.0
Q ss_pred HHhccCChHHHHHHHHHHH
Q 048142 35 ACTHLGALEVGMWLHPYIM 53 (352)
Q Consensus 35 ~~~~~g~~~~a~~~~~~m~ 53 (352)
.....|++++|..-++++.
T Consensus 38 ~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3355666666666655554
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.57 E-value=1.5e+02 Score=20.55 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=32.0
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccccccCCc---HHHH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 048142 37 THLGALEVGMWLHPYIMKKNIEVDVGLGMALKD---VMTL--TALIVVLAMCGQGNKALEYFYEMQI 98 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~---~~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 98 (352)
.+.|++..|.+.+.+........+. +. ...+ -.+.......|++++|+..+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~------~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNN------SSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhccc------chhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5778888886655554433211111 11 1222 2344556677888888888888754
No 427
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.51 E-value=3e+02 Score=23.99 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 73 LTALIVVLAMCGQGNKALEYFYEMQIR--GVKPDAI-TFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
+..|-..-.-..+...|.......++. ...-+.. +--.++....+..++.+....+..+.. ...-...++
T Consensus 63 ~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~ 135 (291)
T PF10475_consen 63 FQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQ 135 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 444444444445555665555555432 0111111 123455666666666666666666653 233445677
Q ss_pred HHHHcCCHHHHHHHHHhCCCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCcchHHHHHHHHhh
Q 048142 150 ILGRAGRIAKAEELIKNMPMA----LDHFVLGGLLGACRIHDNLEAAERAAQQLLEL------LPDNGGSYVILSNRYSS 219 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~ 219 (352)
.+...|++..|++++.+.... ........|-. ++++-....+++.+. ..-|+..|..+..+|.-
T Consensus 136 ~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~------~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~l 209 (291)
T PF10475_consen 136 ELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSS------QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQL 209 (291)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 788899999999998876200 01112222221 233333333333221 24577899999999999
Q ss_pred cCChHHHH
Q 048142 220 SRKWKKVK 227 (352)
Q Consensus 220 ~g~~~~a~ 227 (352)
.|+...+.
T Consensus 210 Lgk~~~~~ 217 (291)
T PF10475_consen 210 LGKTQSAM 217 (291)
T ss_pred HhhhHHHH
Confidence 99877665
No 428
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.15 E-value=3.7e+02 Score=25.55 Aligned_cols=33 Identities=9% Similarity=-0.044 Sum_probs=19.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 209 SYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
.+..++.+....+....|..++.+|.+.|..|.
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 344444444444445567777777777776653
No 429
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=35.09 E-value=3.2e+02 Score=24.12 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC-C----C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 138 RPSIEHYGCLVYILGRAGRIAKAEELIKNMPM-A----L-DHFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 138 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~----p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
.....+|..+.....+.|+++.|...+..+.. . + ++...-.-...+-..|+.++|...++...+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567788889999999999999999988732 1 1 334444455667788999999999888765
No 430
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=34.66 E-value=3.7e+02 Score=24.75 Aligned_cols=132 Identities=12% Similarity=0.016 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH--H--HHhccCCHH
Q 048142 47 WLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVL--V--ACSHAGLVD 122 (352)
Q Consensus 47 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~--~~~~~g~~~ 122 (352)
-+++.+.+.|+.|+...++ +-.+++.++.-.+..++..+++.... .+...+...- . .+...+..+
T Consensus 100 Gv~kaL~e~gl~p~~i~Gt------S~Gaivaa~~a~~~~~e~~~~l~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~ 168 (391)
T cd07229 100 GVVKALWLRGLLPRIITGT------ATGALIAALVGVHTDEELLRFLDGDG-----IDLSAFNRLRGKKSLGYSGYGWLG 168 (391)
T ss_pred HHHHHHHHcCCCCceEEEe------cHHHHHHHHHHcCCHHHHHHHHhccc-----hhhhhhhhhccccccccccccccc
Confidence 4677788899997775443 45667766666666677666665311 1111111100 0 011111222
Q ss_pred HHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------------------CCCCcHHHHHHHHHHH
Q 048142 123 ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNM-------------------PMALDHFVLGGLLGAC 183 (352)
Q Consensus 123 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------------------~~~p~~~~~~~li~~~ 183 (352)
.....+....+. |.-.|...+...+..+...-.++||.+--.+. --.||+..|.++..++
T Consensus 169 ~~~~~l~r~l~~-G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~ 247 (391)
T cd07229 169 TLGRRIQRLLRE-GYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASN 247 (391)
T ss_pred hHHHHHHHHHcC-CCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHc
Confidence 223334444443 65666666666666655555677776443222 1358999999999888
Q ss_pred HhcCCHH
Q 048142 184 RIHDNLE 190 (352)
Q Consensus 184 ~~~g~~~ 190 (352)
+.-+-+.
T Consensus 248 a~p~~~~ 254 (391)
T cd07229 248 ASSAALY 254 (391)
T ss_pred CCccccC
Confidence 7766544
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.66 E-value=1.6e+02 Score=20.47 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=31.7
Q ss_pred HhcCChHHHHHHHHHHHH----cCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 048142 81 AMCGQGNKALEYFYEMQI----RGVKPD----AITFVGVLVACSHAGLVDERISHFNLMSEK 134 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 134 (352)
.+.|++.+|.+.+.+.-+ .+..+. ..+...+.......|+.++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467888888776666543 222221 122223444555678888888877776653
No 432
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=34.41 E-value=1.4e+02 Score=28.98 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCceeEEEEc
Q 048142 219 SSRKWKKVKRIRELMAERNIKKPPGCILIEVD 250 (352)
Q Consensus 219 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~ 250 (352)
+.|++.+|.+.+-.+...++.|...+...+.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 44888888888888888888876554444333
No 433
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.36 E-value=3.2e+02 Score=23.90 Aligned_cols=120 Identities=10% Similarity=-0.073 Sum_probs=64.9
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 048142 37 THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACS 116 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 116 (352)
...+-.+.|.+.|++....+..+... .+...-..++....+.|+.+.-..+++.... .++..--..++.+++
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~-----i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa 212 (324)
T PF11838_consen 141 GDPECVAEARELFKAWLDGNDSPESS-----IPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALA 212 (324)
T ss_dssp T-HHHHHHHHHHHHHHHHTTT-TTST-----S-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHhcCCcccccc-----cchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhh
Confidence 45556677888888877642221000 2233444455566666765554444444443 335666778888888
Q ss_pred ccCCHHHHHHHHHHhhHhcC-CCCChhHHHHHHHHHHHcCCH--HHHHHHHHhC
Q 048142 117 HAGLVDERISHFNLMSEKYG-IRPSIEHYGCLVYILGRAGRI--AKAEELIKNM 167 (352)
Q Consensus 117 ~~g~~~~a~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m 167 (352)
...+.+...++++..... + +.+.. . ..++..+...+.. +.+.+.+.+=
T Consensus 213 ~~~d~~~~~~~l~~~l~~-~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n 263 (324)
T PF11838_consen 213 CSPDPELLKRLLDLLLSN-DKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKEN 263 (324)
T ss_dssp T-S-HHHHHHHHHHHHCT-STS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHcCC-cccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHH
Confidence 888888888888887763 3 43333 2 3444455534444 6677766543
No 434
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.35 E-value=2e+02 Score=21.55 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 048142 43 EVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFY 94 (352)
Q Consensus 43 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~ 94 (352)
+...++|..|.+.|+.. .-...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~--------~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGT--------KLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcch--------hhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34678999999988763 233557777888889999999999986
No 435
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.34 E-value=1.3e+02 Score=19.28 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=23.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh-----ccCCHHHHHHH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACS-----HAGLVDERISH 127 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-----~~g~~~~a~~~ 127 (352)
...|++-+|-++++++-..--.|....+..+|.... +.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 346777777777777654322333444555554432 34555555443
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.21 E-value=3.7e+02 Score=25.87 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCC-cH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 048142 143 HYGCLVYILGRAGRIAKAEELIKNMPMAL-DH---FVLGGLLGACRIHDNLEAAERAAQQLLEL 202 (352)
Q Consensus 143 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (352)
....++.-|.+.+++++|..++..|...- .. .+.+.+.+.+.+..--++.+..++.+...
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 34467888999999999999999994331 12 33445556666666566677777777663
No 437
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.18 E-value=1.4e+02 Score=20.71 Aligned_cols=50 Identities=12% Similarity=-0.073 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHhhcCCh
Q 048142 174 FVLGGLLGACRIHDNLEAAERAAQQLLELL--PDNGGSYVILSNRYSSSRKW 223 (352)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 223 (352)
..--.+...+...|+++.|.+.+-.+.+.. ..+...-..|+..+...|.-
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 344444455556666666665555554432 22334445555555555543
No 438
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.66 E-value=4.4e+02 Score=25.36 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHhccCCHHHHHHHHHHhh
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITF---VGVLVACSHAGLVDERISHFNLMS 132 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~ 132 (352)
.-..|+.-|.+.+++++|+.++..|.=. -. ....| +.+.+.+.+..--++....++.+.
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~-~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWN-TM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCcc-cc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3456788899999999999999887522 11 12233 344555555544444444455544
No 439
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=33.59 E-value=20 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=27.4
Q ss_pred cCccchhHHHhhhhcceEEeecCCccccccCCcc
Q 048142 313 NDCHTATNIISKVYNRETVVMDRNRFHHFKNGSC 346 (352)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 346 (352)
.+..+|.++..+|.+.++|-...+ -|+|++|-+
T Consensus 47 ~~r~eAv~lgq~Ll~~g~I~hv~~-~~~F~d~~~ 79 (83)
T cd04449 47 DTREEAVELGQELMNEGLIEHVSG-RHPFLDGFY 79 (83)
T ss_pred CCHHHHHHHHHHHHHCCCEEecCC-CCCccCCCE
Confidence 456899999999999999987776 668988853
No 440
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.46 E-value=4.3e+02 Score=25.15 Aligned_cols=35 Identities=6% Similarity=-0.029 Sum_probs=25.1
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048142 18 QHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK 54 (352)
Q Consensus 18 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 54 (352)
...|+..+......+... ..|+...|+.+++++..
T Consensus 194 ~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 194 KIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHH
Confidence 346777777776655543 56899999999988764
No 441
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.64 E-value=3.1e+02 Score=31.50 Aligned_cols=113 Identities=11% Similarity=-0.032 Sum_probs=76.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHh----hHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 048142 110 GVLVACSHAGLVDERISHFNLM----SEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRI 185 (352)
Q Consensus 110 ~ll~~~~~~g~~~~a~~~~~~m----~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~ 185 (352)
++..+-.+.+.+..|...+++- ++. ......|..+...|+.-+++|....+...---.|+. ..-|.-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~---~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK---ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh---HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHh
Confidence 4455666788888998888883 221 123344555566899999999888777642112332 234445667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHH
Q 048142 186 HDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKR 228 (352)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 228 (352)
.|++..|...|+.+.+..|+...+++-+++.-...|.++.+.-
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHh
Confidence 8999999999999999988888778766665555555555443
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.62 E-value=2.9e+02 Score=25.52 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=65.5
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCC-----HhHHHHHHHHHhccCCHHHHHHHHHHhhHhc
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQI-------RGVKPD-----AITFVGVLVACSHAGLVDERISHFNLMSEKY 135 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 135 (352)
.++.+--..+..+....+..+-++..+.... .|-.|- -.+...|++..+-.|++..|+++++.+.-..
T Consensus 73 W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~ 152 (404)
T PF10255_consen 73 WNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNK 152 (404)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCccc
Confidence 5555555666777777777666655544211 111211 1344567888899999999999987764321
Q ss_pred -----CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 136 -----GIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 136 -----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
.+.+ ...+|--+.-+|.-.+++.+|.+.|...
T Consensus 153 ~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 153 KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 4556777778888999999999999875
No 443
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.14 E-value=3.2e+02 Score=23.25 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHhHHHHHHHHHhc-cCCHHHHHHHHHHhhHhcCCCC-ChhHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIR----G-VKPDAITFVGVLVACSH-AGLVDERISHFNLMSEKYGIRP-SIEHY 144 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~m~~~~g~~p-~~~~~ 144 (352)
+|.-.-++|- ..++++|...++...+- | +..-...+..+...|-. .-++++|+..|+..-+-+.... +...-
T Consensus 76 ~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 3444444443 34666666666544331 1 11111112233344433 3567778888877765443322 22222
Q ss_pred HHHHHH--H-HHcCCHHHHHHHHHhC---CCCCcHHHHHH---HH-HHHH--hcCCHHHHHHHHHHHHHhCCC
Q 048142 145 GCLVYI--L-GRAGRIAKAEELIKNM---PMALDHFVLGG---LL-GACR--IHDNLEAAERAAQQLLELLPD 205 (352)
Q Consensus 145 ~~li~~--~-~~~g~~~~A~~~~~~m---~~~p~~~~~~~---li-~~~~--~~g~~~~a~~~~~~~~~~~~~ 205 (352)
-+++.+ | +..+++.+|.++|++. .+..+..-|.. ++ .++| ...+.-.+.+.+++..+..|.
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 233332 3 4678899999999987 22222222321 11 1222 235555666777777666654
No 444
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=32.11 E-value=37 Score=23.87 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=29.7
Q ss_pred ccccCccchhHHHhhhhcceEEeecCCccccccCCcc
Q 048142 310 RVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSC 346 (352)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 346 (352)
..|.+..+|..+-..+.+.+|+....++ |+|++|..
T Consensus 51 g~~~tR~eAv~~gq~Ll~~gii~HV~~~-h~F~D~~l 86 (93)
T cd04440 51 GDCRTREEAVILGVGLCNNGFMHHVLEK-SEFKDEPL 86 (93)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEecCCC-cCcCCcCe
Confidence 3456778999999999999999888877 58998853
No 445
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=31.97 E-value=3.7e+02 Score=26.22 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=57.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 048142 38 HLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSH 117 (352)
Q Consensus 38 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 117 (352)
-.|+...|..-+......... -.-+..-.|...+.+.|...+|-.++.+-..-. .....++-.+-+++..
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~---------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPL---------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLA 688 (886)
T ss_pred ecCCcHHHHHHHHHHhccChh---------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHH
Confidence 356666666654443322111 111223344455556667777777777766543 3455667777777777
Q ss_pred cCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHH
Q 048142 118 AGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYI 150 (352)
Q Consensus 118 ~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 150 (352)
..+++.|++.|++..+. .| ++..-+.|...
T Consensus 689 l~~i~~a~~~~~~a~~~---~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKL---TTKCPECENSLKLI 719 (886)
T ss_pred HhhhHHHHHHHHHHHhc---CCCChhhHHHHHHH
Confidence 88888888888776643 33 44455555443
No 446
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.80 E-value=1.2e+02 Score=21.86 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=20.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 048142 78 VVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG 119 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 119 (352)
..+...+..-.|.++++++.+.+..++..|.--.|+.+...|
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333344444455566666655554444444333444444444
No 447
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.60 E-value=1.4e+02 Score=25.29 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=64.2
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCChhHH-HHHHHHHHHcCCHHHHHHH-HHhCCCCCcHHHHHHHHH-HHHhcCCHH
Q 048142 114 ACSHAGLVDERISHFNLMSEKYGIRPSIEHY-GCLVYILGRAGRIAKAEEL-IKNMPMALDHFVLGGLLG-ACRIHDNLE 190 (352)
Q Consensus 114 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~-~~~~~g~~~ 190 (352)
-|....+++.|...|.+.. -+.|+..+| ..=+-++.+..+++.+..= ...+.+.|+.+--..++. +......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3555667777777665554 456665443 3445556666666654432 233355666554444443 445566677
Q ss_pred HHHHHHHHHHHh-----CCCCcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 191 AAERAAQQLLEL-----LPDNGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 191 ~a~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
+|+..+.+..+. .++-......|..+=-+.-...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 777777776442 2333445556655544444455555555544
No 448
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.79 E-value=4.4e+02 Score=24.41 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhhHh--------cCCCC
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKP---DAITFVGVLVACSHAGLVDERISHFNLMSEK--------YGIRP 139 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~g~~p 139 (352)
..+.-+...|..+|+++.|++.|-+...- +.. ....|..+|..-.-.|+|.....+..+..+. ..+.+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 45778889999999999999999996543 222 2334556666666778887776666665542 02333
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhCC---------CCCcHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHHhCCC
Q 048142 140 SIEHYGCLVYILGRAGRIAKAEELIKNMP---------MALDHFVLGGLLGACRIHDNLEAAERA-----AQQLLELLPD 205 (352)
Q Consensus 140 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~li~~~~~~g~~~~a~~~-----~~~~~~~~~~ 205 (352)
-...+..|.....+ +++.|...|-... +.|..++--..+.+++..+.-+.-..+ |+...+.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 44445555544443 6777777665441 334433333444555544443332222 2222332
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHHHH
Q 048142 206 NGGSYVILSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 234 (352)
.+..+..+-.-| .+++...++++++++
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIK 331 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhc
Confidence 334444444444 356777777776664
No 449
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.10 E-value=6.3e+02 Score=26.00 Aligned_cols=221 Identities=15% Similarity=0.041 Sum_probs=118.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCC----H---HHHHHHHHHH-hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGD----K---VTMVSLLLAC-THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTA 75 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~----~---~t~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 75 (352)
..++.+|..+..+....=-.|+ . ..|+.|-... ...|+++.+.++-+.....=...... +.++.+.+
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~-----~r~~~~sv 502 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR-----SRIVALSV 502 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch-----hhhhhhhh
Confidence 4677888888887765322222 1 2344433322 45788899988888766532111111 56677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH-----HHHhccCC--HHHHHHHHHHhhHhcCC-CC----ChhH
Q 048142 76 LIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVL-----VACSHAGL--VDERISHFNLMSEKYGI-RP----SIEH 143 (352)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-----~~~~~~g~--~~~a~~~~~~m~~~~g~-~p----~~~~ 143 (352)
+..+..-.|++++|..+..+..+.--.-|...|.... ..+-..|. ..+....|......+.- .| -..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 8888888999999999888776542233433332222 12233452 23333333333332111 11 2234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC---C--CCCc--HHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--cchHHH
Q 048142 144 YGCLVYILGRAGRIAKAEELIKNM---P--MALD--HFV--LGGLLGACRIHDNLEAAERAAQQLLELLPDN--GGSYVI 212 (352)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m---~--~~p~--~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 212 (352)
+..+..++.+ ++.+..-...- + ..|. ... +..|.......|+.++|.....++....... .+-|..
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4455555554 44433332221 1 1122 222 2356778889999999999999987642111 122222
Q ss_pred H-----HHHHhhcCChHHHHHHHHH
Q 048142 213 L-----SNRYSSSRKWKKVKRIREL 232 (352)
Q Consensus 213 l-----i~~~~~~g~~~~a~~~~~~ 232 (352)
. ...-...|+.+.+.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2 2223566788777766554
No 450
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=30.04 E-value=3.9e+02 Score=23.57 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC
Q 048142 106 ITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPS 140 (352)
Q Consensus 106 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 140 (352)
..|. ++++.. .|+..+|..+++.+... |..|-
T Consensus 202 ~if~-l~dai~-~~~~~~A~~~l~~L~~~-g~~p~ 233 (326)
T PRK07452 202 NSLQ-LADALL-QGNTGKALALLDDLLDA-NEPAL 233 (326)
T ss_pred cHHH-HHHHHH-CCCHHHHHHHHHHHHHC-CCcHH
Confidence 3443 555544 36777777777777664 65553
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.32 E-value=2.9e+02 Score=21.85 Aligned_cols=58 Identities=16% Similarity=0.009 Sum_probs=27.2
Q ss_pred HHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 97 QIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 97 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
...|++++..-. .++..+......-.|.++++.+.+. +..++..|----+..+.+.|-
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCC
Confidence 344555444332 3334444344444566666666554 444444443333444555443
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.66 E-value=4.8e+02 Score=24.18 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=82.6
Q ss_pred CccCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccC-CcHHHHHHHH
Q 048142 1 YVEDSACEEALLLFREVQHKG--LTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMAL-KDVMTLTALI 77 (352)
Q Consensus 1 y~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-~~~~~~~~li 77 (352)
|..+|+++.|++.+.+.+..- .+-....|-.+|..-.-.|+|.....+..+..+.-.. +....... +-...+..|.
T Consensus 160 y~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~-~~~~~q~v~~kl~C~agLa 238 (466)
T KOG0686|consen 160 YLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA-NENLAQEVPAKLKCAAGLA 238 (466)
T ss_pred HHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh-hhhHHHhcCcchHHHHHHH
Confidence 345799999999998854421 1112344556666667788888877777776654100 00000000 2233444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHc------CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHH
Q 048142 78 VVLAMCGQGNKALEYFYEMQIR------GVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYIL 151 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 151 (352)
.... +++..|...|-...-. =+.|..++--..+.+++-.++-+--..+...-.-+.=.+..+.....+...|
T Consensus 239 ~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy 316 (466)
T KOG0686|consen 239 NLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLREILFKFY 316 (466)
T ss_pred HHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHh
Confidence 4333 3677777766543221 1344444433444555554444333222222111101122444455555554
Q ss_pred HHcCCHHHHHHHHHhC
Q 048142 152 GRAGRIAKAEELIKNM 167 (352)
Q Consensus 152 ~~~g~~~~A~~~~~~m 167 (352)
. +++...+++++++
T Consensus 317 ~--sky~~cl~~L~~~ 330 (466)
T KOG0686|consen 317 S--SKYASCLELLREI 330 (466)
T ss_pred h--hhHHHHHHHHHHh
Confidence 3 6788899999888
No 453
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.60 E-value=6.8e+02 Score=25.93 Aligned_cols=112 Identities=11% Similarity=0.001 Sum_probs=72.4
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHH
Q 048142 68 KDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCL 147 (352)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 147 (352)
.+..+|..|...-.+.|+.+-|...|++.+. |.-|--.|.-.|+.++-.++.+....+ -|..+ .
T Consensus 670 dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r----~D~~~---~ 733 (1202)
T KOG0292|consen 670 DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR----NDATG---Q 733 (1202)
T ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh----hhhHH---H
Confidence 4556889999888889999888888887654 233333456678887766655554432 12211 1
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048142 148 VYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (352)
...-.-.|++++=..+++..|..|- .|- .-..+|.-+.|+++.++...
T Consensus 734 ~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 734 FQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 1111235889999999998875442 221 23457888899999888755
No 454
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.11 E-value=41 Score=29.88 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 048142 154 AGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRE 231 (352)
Q Consensus 154 ~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (352)
.|.+++|++.|... ...|. ...|..=-+.+.+.+.+..|++=+....+..++...-|-.--.+-...|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555443 22222 23333333444445555555555555444444444444433333444455555555555
Q ss_pred HHHhcCCCC
Q 048142 232 LMAERNIKK 240 (352)
Q Consensus 232 ~m~~~g~~p 240 (352)
...+.++.+
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 554444443
No 455
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.69 E-value=3.4e+02 Score=22.22 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHH
Q 048142 71 MTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAIT-FVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVY 149 (352)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 149 (352)
..-+.++..+...||++.|.+.|--+.+.. +.|..+ |..=+..+.+.+.-.... .-++.|+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~----------------~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSEL----------------EFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHH----------------HHHHHHHH
Confidence 456778888888999999999999888752 334322 332232332222222222 34455555
Q ss_pred HHHHcCCHHHHHHHHHhC-----C---CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC
Q 048142 150 ILGRAGRIAKAEELIKNM-----P---MALD---HFVLGGLLGACRIHDNLEAAERAAQQLLEL--LPD 205 (352)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m-----~---~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~ 205 (352)
.|.......+........ | ..|. ...|..++..-.+....+++.++.++|.+. .||
T Consensus 105 ~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PP 173 (199)
T PF04090_consen 105 FYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPP 173 (199)
T ss_pred HHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 565443333322222111 1 1122 123444555444445566777888887774 454
No 456
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.67 E-value=4.8e+02 Score=23.87 Aligned_cols=57 Identities=11% Similarity=0.030 Sum_probs=39.6
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 048142 35 ACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLA--MCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 35 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 99 (352)
.+...+++..|.++++.+.+. ++++. ....|..+..+|. ...++++|.+.|+.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~-------~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGRE-------EYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchh-------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445888889999999888886 44221 1235666666665 466788888888887664
No 457
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.57 E-value=7.1e+02 Score=25.81 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHhccCCH--HHHHHHHHHhhHhcCCCCChhHHHH-
Q 048142 73 LTALIVVLAMCGQGNKALEYFYEMQI---RGVKPDAITFVGVLVACSHAGLV--DERISHFNLMSEKYGIRPSIEHYGC- 146 (352)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~--~~a~~~~~~m~~~~g~~p~~~~~~~- 146 (352)
|..|+..|...|+.++|+++|.+... ..-.--...+--++..+.+.+.. +-.+++-+...+. .-......+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cchhheeeeecc
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCC--------HHHHHHH--HHHHHHh
Q 048142 147 -----------LVYILGRAGRIAKAEELIKNM---PMALDHFVLGGLLGACRIHDN--------LEAAERA--AQQLLEL 202 (352)
Q Consensus 147 -----------li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~--------~~~a~~~--~~~~~~~ 202 (352)
.+-.|......+-+..+++.+ .-.++..-.+.++..|+..=+ -+++.+. -+++...
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Q ss_pred --------------CCCCcchHHHHHHHHhhcCChHHHHHHH
Q 048142 203 --------------LPDNGGSYVILSNRYSSSRKWKKVKRIR 230 (352)
Q Consensus 203 --------------~~~~~~~~~~li~~~~~~g~~~~a~~~~ 230 (352)
..+....|....-.+.+.|+-++|..++
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iy 707 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIY 707 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHH
No 458
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=27.23 E-value=2.7e+02 Score=20.87 Aligned_cols=48 Identities=6% Similarity=-0.067 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE 58 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 58 (352)
.++.=|.+++...... |+ +...++.+.+..-.-.+.++..++....-.
T Consensus 3 nNp~IA~~~l~~l~~s---~~---~~~yld~lv~~~~sl~s~EvVn~L~~~~~~ 50 (126)
T PF10155_consen 3 NNPNIAIEILVKLINS---PN---FKEYLDVLVSMDMSLHSMEVVNRLTTSFSL 50 (126)
T ss_pred CcHHHHHHHHHHHcCC---ch---HHHHHHHHHcCCCchhHHHHHHHHHcCCCC
Confidence 4566677777666543 22 666777777787777888888888776543
No 459
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=27.22 E-value=5.7e+02 Score=24.56 Aligned_cols=94 Identities=11% Similarity=0.131 Sum_probs=56.8
Q ss_pred HHHHHHHHH-HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCcc----ccc--cCCcHHHHHHHHHHH
Q 048142 9 EALLLFREV-QHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE-VDVG----LGM--ALKDVMTLTALIVVL 80 (352)
Q Consensus 9 ~A~~~~~~m-~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~----~~~--~l~~~~~~~~li~~~ 80 (352)
+....++.. ...|+..+......++.. ..|++..|...++++...+-. .... +.. ...+....-.|+.+.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai 268 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYI 268 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 334444333 446777777776666654 468999999999888653211 0000 000 003334444556655
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH
Q 048142 81 AMCGQGNKALEYFYEMQIRGVKPDA 105 (352)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~g~~p~~ 105 (352)
. .|+.++|+.+++++...|..|..
T Consensus 269 ~-~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 269 I-HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 5 48899999999999988887664
No 460
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=26.74 E-value=2.8e+02 Score=20.84 Aligned_cols=55 Identities=22% Similarity=0.152 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHH-HHHHHHHhcCCHHHHHHH
Q 048142 141 IEHYGCLVYILGRAGRIAKAEELIKNMPMALDHFVLG-GLLGACRIHDNLEAAERA 195 (352)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~li~~~~~~g~~~~a~~~ 195 (352)
..+-.++..++.-.|..++|.++++..+--++-...| -++..|....+.++..++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~ 121 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEI 121 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4444555666666666666666666664333333322 355566665555554444
No 461
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.62 E-value=2.4e+02 Score=27.73 Aligned_cols=83 Identities=8% Similarity=0.025 Sum_probs=62.3
Q ss_pred HcCCHHHHHHHHHh-CCCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChH
Q 048142 153 RAGRIAKAEELIKN-MPMALD-------HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWK 224 (352)
Q Consensus 153 ~~g~~~~A~~~~~~-m~~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 224 (352)
+..++..+.+.|.. |..-|+ ......|--+|....+.|.|.+++++..+.+|.++.+--.+..+....|.-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 34556666666654 321111 3445667778888889999999999999998888888888888889999999
Q ss_pred HHHHHHHHHHh
Q 048142 225 KVKRIRELMAE 235 (352)
Q Consensus 225 ~a~~~~~~m~~ 235 (352)
+|+........
T Consensus 446 ~AL~~~~~~~s 456 (872)
T KOG4814|consen 446 EALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHh
Confidence 99988877654
No 462
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.60 E-value=93 Score=20.61 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGA 41 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 41 (352)
+|+.+.+.+++++....|..|.......+..+..+.|+
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56777888888888877777776666666666655543
No 463
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.37 E-value=4.9e+02 Score=24.09 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH--H-----h-CCCCcchHHHHHHHHhhcCChHHHHHHHHHH
Q 048142 179 LLGACRIHDNLEAAERAAQQLL--E-----L-LPDNGGSYVILSNRYSSSRKWKKVKRIRELM 233 (352)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~--~-----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 233 (352)
|++..+-.||+..|+++++.+. + . .+-...+|-.+.-+|...+++.+|.++|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544431 0 0 1113344555555566666666666665554
No 464
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=26.13 E-value=4.2e+02 Score=22.73 Aligned_cols=154 Identities=14% Similarity=0.018 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH-----HHHHHHHHHhhHhcCCCCChhHHHH
Q 048142 72 TLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLV-----DERISHFNLMSEKYGIRPSIEHYGC 146 (352)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~m~~~~g~~p~~~~~~~ 146 (352)
.-+.++..+.+.+....|..+.+.+... +-=..+.-.|+......... ......+....+- +...+. |-.
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l--l~~f~~-~l~ 158 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL--LQEFPE-YLE 158 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH--HHcCcc-hHH
Confidence 3567888888889999999998888653 21123333343332211111 1111222222211 011111 333
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc-------chHHHHHHHHhh
Q 048142 147 LVYILGRAGRIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNG-------GSYVILSNRYSS 219 (352)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~ 219 (352)
++..|.|.-+...=-.+|+..| .| ..|+.-|.+.|+++.|-.++--+......+. ..-..|+.....
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Confidence 3444444444444455676665 33 2578889999999999888777765443332 334467788888
Q ss_pred cCChHHHHHHHHHHHhc
Q 048142 220 SRKWKKVKRIRELMAER 236 (352)
Q Consensus 220 ~g~~~~a~~~~~~m~~~ 236 (352)
.++|+-+.++.+-++.-
T Consensus 233 ~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKAL 249 (258)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999998888753
No 465
>PRK10941 hypothetical protein; Provisional
Probab=25.83 E-value=4.4e+02 Score=22.80 Aligned_cols=76 Identities=7% Similarity=-0.061 Sum_probs=53.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHH----HhCCCCCcHHHHHHHHHH
Q 048142 108 FVGVLVACSHAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELI----KNMPMALDHFVLGGLLGA 182 (352)
Q Consensus 108 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~p~~~~~~~li~~ 182 (352)
.+.+-.+|.+.++++.|.++.+.+.. +.| ++.-+---.-.|.+.|.+..|..=+ +..|..|+...-...+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34677788899999999999998875 455 4444555555688889988876643 444666777777766666
Q ss_pred HHhc
Q 048142 183 CRIH 186 (352)
Q Consensus 183 ~~~~ 186 (352)
....
T Consensus 261 l~~~ 264 (269)
T PRK10941 261 IEQK 264 (269)
T ss_pred Hhhc
Confidence 5443
No 466
>PRK09687 putative lyase; Provisional
Probab=25.52 E-value=4.5e+02 Score=22.82 Aligned_cols=217 Identities=12% Similarity=0.042 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCCh----HHHHHHHHHHHH
Q 048142 23 TGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQG----NKALEYFYEMQI 98 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~ 98 (352)
.+|.......+.++...|..+. ......+.+. +|...=...+.++++.|+. ++++..+..+..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~-~~~l~~ll~~------------~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDV-FRLAIELCSS------------KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL 100 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchH-HHHHHHHHhC------------CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence 4566666667777777765333 2333333322 2223334445556666653 456666666633
Q ss_pred cCCCCCHhHHHHHHHHHhccCCH-----HHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcH
Q 048142 99 RGVKPDAITFVGVLVACSHAGLV-----DERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEELIKNMPMALDH 173 (352)
Q Consensus 99 ~g~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 173 (352)
. .|+...-...+.+++..+.. ..+...+..... .++..+--..+.++++.++- +|...+-.+-..+|.
T Consensus 101 ~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~ 173 (280)
T PRK09687 101 E--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNG 173 (280)
T ss_pred c--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCH
Confidence 2 34555555555555554321 222333322222 23445555566666666653 344444333113343
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCceeEEEEcce
Q 048142 174 FVLGGLLGACRIHD-NLEAAERAAQQLLELLPDNGGSYVILSNRYSSSRKWKKVKRIRELMAERNIKKPPGCILIEVDGV 252 (352)
Q Consensus 174 ~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~ 252 (352)
.+-..-+.++...+ +.+.+...+..+.. -++..+-...+.++.+.|+. .|...+-+..+.+.. . ...
T Consensus 174 ~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~~---~------~~a 241 (280)
T PRK09687 174 DVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGTV---G------DLI 241 (280)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCch---H------HHH
Confidence 33333444444332 12233333333332 23444555566666666653 344433333333221 0 134
Q ss_pred eehhhhcCcccCchhhhhcC
Q 048142 253 VHEFVKAGFVPNKSEVLFDM 272 (352)
Q Consensus 253 ~~~~~~~G~~~~~~~~~~~~ 272 (352)
+..+.+.|.. .+...+..+
T Consensus 242 ~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 242 IEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHhcCCH-hHHHHHHHH
Confidence 4445566653 455544443
No 467
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=25.36 E-value=1.6e+02 Score=24.91 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=24.5
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 117 HAGLVDERISHFNLMSEKYGIRP-SIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 117 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
+.++.+.+-+++.+.. ++.| +..+|--+-..-.++|+++.|.+-+++.
T Consensus 7 ~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~ 55 (287)
T COG4976 7 ESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEV 55 (287)
T ss_pred ccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHH
Confidence 4455555555555544 3333 4445555555555555555555555544
No 468
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=25.28 E-value=55 Score=22.29 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=27.8
Q ss_pred ccCccchhHHHhhhhcceEEeecCCccccccCCcc
Q 048142 312 CNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSC 346 (352)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 346 (352)
+.+..+|.++-..+.+.+++-..... |+|+++..
T Consensus 44 ~~~R~eAv~~gq~Ll~~g~i~hV~~~-~~F~D~~~ 77 (81)
T cd04448 44 AATRVQAIAIGQALLDAGWIECVSDD-DLFRDEYA 77 (81)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCC-CccccCcc
Confidence 35668999999999999999887776 59998754
No 469
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.26 E-value=3.1e+02 Score=20.94 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=24.8
Q ss_pred HHHcCCCCCHhHHHHHHHHHhcc-CCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 96 MQIRGVKPDAITFVGVLVACSHA-GLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 96 m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
+.+.|++++..= ..++..+... +..-.|.++++.+.+. +...+..|.---++.+...|
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCC
Confidence 334455544332 2233333332 3344555666666554 43334433333334444444
No 470
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=25.23 E-value=4.3e+02 Score=22.54 Aligned_cols=133 Identities=10% Similarity=0.049 Sum_probs=73.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHc
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRA 154 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 154 (352)
--+..|++.-++.-|-..+++..+ | ..+-. .+--|.+..+..--.++.+-.+.. ++.-+.....+++ +...
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE----P-IQSRC-AiLRysklsd~qiL~Rl~~v~k~E-kv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE----P-IQSRC-AILRYSKLSDQQILKRLLEVAKAE-KVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh----h-HHhhh-HhhhhcccCHHHHHHHHHHHHHHh-CCCCCcchHHHhh--hhcc
Confidence 345666666666666655555543 1 12222 222455555554444555444443 5555555554444 3456
Q ss_pred CCHHHHHHHHHhC---------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 048142 155 GRIAKAEELIKNM---------------PMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRY 217 (352)
Q Consensus 155 g~~~~A~~~~~~m---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 217 (352)
|+...|+..++.- -..|.+.....++..|.. +++++|.+.+.++.+..-......+++.+.+
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~FRv~ 282 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLFRVV 282 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7777776665543 135777777777776654 5688899988887764322223444444444
No 471
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=25.19 E-value=6.6e+02 Score=24.67 Aligned_cols=187 Identities=12% Similarity=0.028 Sum_probs=110.4
Q ss_pred hHHHHHHHHHH-HCCCCC--CHHHHHHHHHHHh-ccCChHHHHHHHHHHHHcCCCCCccccccCCcH--HHHHHHHHHHH
Q 048142 8 EEALLLFREVQ-HKGLTG--DKVTMVSLLLACT-HLGALEVGMWLHPYIMKKNIEVDVGLGMALKDV--MTLTALIVVLA 81 (352)
Q Consensus 8 ~~A~~~~~~m~-~~g~~p--~~~t~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~~li~~~~ 81 (352)
..|+..++... +..+.| +..++..+...+. ...+++.|+..+.+.....-.++. .|. ..-..++..|.
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~------~d~k~~~~~ll~~i~~ 111 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL------TDLKFRCQFLLARIYF 111 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch------HHHHHHHHHHHHHHHH
Confidence 34566666666 333444 3345556666664 788999999999976543322111 222 12335567777
Q ss_pred hcCChHHHHHHHHHHHHc----CCCCCHhHHHHH-HHHHhccCCHHHHHHHHHHhhHhcC--CCCChhHHHHHHHHHH--
Q 048142 82 MCGQGNKALEYFYEMQIR----GVKPDAITFVGV-LVACSHAGLVDERISHFNLMSEKYG--IRPSIEHYGCLVYILG-- 152 (352)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~-- 152 (352)
+.+... |...+++..+. +..+=...|.-+ +..+...++...|.+.++....... ..|...++-.++.+..
T Consensus 112 ~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l 190 (608)
T PF10345_consen 112 KTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHL 190 (608)
T ss_pred hcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 776655 99998887653 122223334444 3333334799999999988877532 3344444545555443
Q ss_pred HcCCHHHHHHHHHhC------------CCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 048142 153 RAGRIAKAEELIKNM------------PMALDHFVLGGLLGA--CRIHDNLEAAERAAQQLLE 201 (352)
Q Consensus 153 ~~g~~~~A~~~~~~m------------~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~ 201 (352)
+.+..+++.+..+++ ...|-..+|..++.. +...|+++.+...++++.+
T Consensus 191 ~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 191 RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456566676666654 112456777777764 4567887787777666543
No 472
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=24.80 E-value=2e+02 Score=19.25 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=15.9
Q ss_pred CHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhc
Q 048142 156 RIAKAEELIKNM--PMALDHFVLGGLLGACRIH 186 (352)
Q Consensus 156 ~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~ 186 (352)
+.+-|..++..+ ..+.++..||++..-+.++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 344555555555 2334556666655544443
No 473
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=24.71 E-value=38 Score=23.28 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=28.1
Q ss_pred ccccccCccchhHHHhhhhcceEEeecCCccccccCC
Q 048142 308 NLRVCNDCHTATNIISKVYNRETVVMDRNRFHHFKNG 344 (352)
Q Consensus 308 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 344 (352)
+.....+..+|.++-.++.+.+++-...+++ +|..+
T Consensus 42 ~~~~~~~R~eAv~~g~~Ll~~G~i~HV~~~h-~F~d~ 77 (84)
T cd04438 42 HVEGLTDRREARKYASSLLKLGYIRHTVNKI-TFSEQ 77 (84)
T ss_pred hCCCCCCHHHHHHHHHHHHHCCcEEecCCCc-cccCC
Confidence 3333456789999999999999998888887 56554
No 474
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.68 E-value=4.1e+02 Score=22.13 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhCC--------CC--CcHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHh-C-CCCcchHHHHH
Q 048142 156 RIAKAEELIKNMP--------MA--LDHFVLGGLLGACRIHD---------NLEAAERAAQQLLEL-L-PDNGGSYVILS 214 (352)
Q Consensus 156 ~~~~A~~~~~~m~--------~~--p~~~~~~~li~~~~~~g---------~~~~a~~~~~~~~~~-~-~~~~~~~~~li 214 (352)
..+.|..++..|+ +. ....-|..+..+|.++| +.+.-.++++..++- . .--+..|.++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 4678888888883 11 23566777888888877 334444555554442 1 12335677777
Q ss_pred HHHhhcCChHHHHHHHHHHH
Q 048142 215 NRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 215 ~~~~~~g~~~~a~~~~~~m~ 234 (352)
+--...-+.+++.+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 76666667777777777664
No 475
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.52 E-value=3.3e+02 Score=20.92 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048142 23 TGDKVTMVSLLLACTHLG---ALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 23 ~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 99 (352)
.++..+--.+..++.+.. +..++..+++.+.+...+.+. ++-.-| |.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r------Re~lyY--LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR------RECLYY--LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc------hhhhhh--hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455666566666776655 456788899998873332221 233333 456778899999999999988873
Q ss_pred CCCCCH
Q 048142 100 GVKPDA 105 (352)
Q Consensus 100 g~~p~~ 105 (352)
+||.
T Consensus 101 --e~~n 104 (149)
T KOG3364|consen 101 --EPNN 104 (149)
T ss_pred --CCCc
Confidence 5553
No 476
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.50 E-value=1.7e+02 Score=24.66 Aligned_cols=58 Identities=26% Similarity=0.273 Sum_probs=38.6
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 048142 151 LGRAGRIAKAEELIKNM-PMALD-HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGG 208 (352)
Q Consensus 151 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (352)
..+.++.+.|.+++.+. ...|. ..+|--+-..--+.|+.+.|.+.+++..+..|+|..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 44566777777777665 33343 666766666667777777777777777777776653
No 477
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=24.37 E-value=26 Score=21.83 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=21.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048142 5 SACEEALLLFREVQHKGLTGDKVTMVSLLLAC 36 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 36 (352)
|-.++.+++|++|..+...|....|+-.+.=|
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDY 37 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHH
Confidence 55567777777777777777766666555443
No 478
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.33 E-value=1.3e+02 Score=21.91 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=23.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAG 119 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 119 (352)
.++..+...+..-.|.++++.|.+.+...+..|.=--|+.+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344555555556666777777776665555554333334444433
No 479
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=24.31 E-value=7e+02 Score=24.62 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=21.9
Q ss_pred hhHHHHHHHH-----HHHcCCHHHHHHHHHhCCCCCc
Q 048142 141 IEHYGCLVYI-----LGRAGRIAKAEELIKNMPMALD 172 (352)
Q Consensus 141 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~ 172 (352)
..|+..|++. +...|++++|++.++++++-|.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 4556655543 4578999999999999988774
No 480
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=23.98 E-value=2.6e+02 Score=19.50 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 048142 113 VACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGRIAKAEEL 163 (352)
Q Consensus 113 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 163 (352)
.-|-+.|..+.+.+.+...+...|-. .|...|+.++..++.-.-|+++
T Consensus 40 ~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 40 YEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred hhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHH
Confidence 34445555555555555554432322 3444555555555554444444
No 481
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.85 E-value=4.2e+02 Score=21.92 Aligned_cols=22 Identities=14% Similarity=0.079 Sum_probs=12.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 048142 78 VVLAMCGQGNKALEYFYEMQIR 99 (352)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~ 99 (352)
....+.|+.++|.+.|.+....
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcC
Confidence 3444566666666666666554
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.82 E-value=3.7e+02 Score=21.24 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH
Q 048142 75 ALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLV 121 (352)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 121 (352)
.++..+....+.-.|.++++++.+.+..++..|----|..+...|-+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 45555556677889999999999988777776644445566655544
No 483
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=23.77 E-value=3.8e+02 Score=21.41 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcC
Q 048142 90 LEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAG 155 (352)
Q Consensus 90 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 155 (352)
..+..++.+.|+. ..+-...+.........+.|..++..-....+..|+..-..-+...+.+.|
T Consensus 88 ~rl~qeL~qkGi~--~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rG 151 (174)
T COG2137 88 ARLKQELKQKGID--DEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRG 151 (174)
T ss_pred HHHHHHHHHcCCC--HHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcC
Confidence 3445555555532 222333444344444444444444433332223344444444455555444
No 484
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=23.75 E-value=8e+02 Score=25.12 Aligned_cols=214 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccccccCCc-HHHHHHHHHHHHh
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIEVDVGLGMALKD-VMTLTALIVVLAM 82 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~-~~~~~~li~~~~~ 82 (352)
.|.++.|+..+..+-..+ .|.+.+.+.+ ...|-+..+...=+++.......++ +. ..-+.-||.+|.+
T Consensus 481 sgqfe~AI~fL~~~~~~~--~dAVH~AI~l---~~lglL~~~~s~~~~ll~~d~~d~~------k~~~lnf~rLi~~Ytk 549 (835)
T KOG2168|consen 481 SGQFERAIEFLHREEPNR--IDAVHVAIAL---AELGLLRTSSSTSQELLSIDPNDPP------KSRRLNFARLIIAYTK 549 (835)
T ss_pred HHhHHHHHHHHHhhcCCc--chhHHHHHHH---HHhhhhccCCCCCCcccccCCCCCc------ccccccHHHHHHHHHH
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh-------------------ccCCHHHHHHHHHHhhHhcCCCCChhH
Q 048142 83 CGQGNKALEYFYEMQIRGVKPDAITFVGVLVACS-------------------HAGLVDERISHFNLMSEKYGIRPSIEH 143 (352)
Q Consensus 83 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------------------~~g~~~~a~~~~~~m~~~~g~~p~~~~ 143 (352)
.-....+-..++-.---...+|...-+.++.+.+ ...+.+.-+.-|...... -...
T Consensus 550 ~fe~~d~~~al~y~~~lr~~~d~q~~~l~l~~v~~lVl~t~~~f~~iLG~i~~dG~r~~G~l~~f~~~~~~-----~~~i 624 (835)
T KOG2168|consen 550 SFEYTDTRVALQYYYLLRLNKDPQGSNLFLKCVCELVLETEEEFDLILGKIKPDGSREPGLLDEFLPLIED-----LQKI 624 (835)
T ss_pred HHHhccchhhhheeeeecccCChhHHHHHHHHHHHHHHhccccHHHHhcccCCCCCCCcchHhhhccchhh-----HHHH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCCcchHHH----
Q 048142 144 YGCLVYILGRAGRIAKAEELIKNMPMALD--HFVLGGLLGACRIHD-----NLEAAERAAQQLLELLPDNGGSYVI---- 212 (352)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~---- 212 (352)
+....+-....|.+++|..++...+ .+| ..+.|.+++--...- +.++-..+...|.+....+......
T Consensus 625 ~~~vA~~a~~~G~~~~sI~LY~lag-~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~ 703 (835)
T KOG2168|consen 625 ILEVASEADEDGLFEDAILLYHLAG-DYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVK 703 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHH
Q ss_pred ---------HHHHHhhcCChHHHHHHHHHHH
Q 048142 213 ---------LSNRYSSSRKWKKVKRIRELMA 234 (352)
Q Consensus 213 ---------li~~~~~~g~~~~a~~~~~~m~ 234 (352)
-+.-....|++++|..+++.+.
T Consensus 704 t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 704 TLSLLLDLVSFFDLYHNGEWEEALSILEHLD 734 (835)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
No 485
>PRK10304 ferritin; Provisional
Probab=23.65 E-value=2.2e+02 Score=22.47 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCc
Q 048142 40 GALEVGMWLHPYIMKKNIEVDV 61 (352)
Q Consensus 40 g~~~~a~~~~~~m~~~g~~~~~ 61 (352)
...+-|.++++.+...|-.|..
T Consensus 49 EE~~HA~kl~~~i~~rgg~~~~ 70 (165)
T PRK10304 49 EEMTHMQRLFDYLTDTGNLPRI 70 (165)
T ss_pred HHHHHHHHHHHHHHHcCCCeee
Confidence 3456688888888888776544
No 486
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=23.52 E-value=62 Score=22.32 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=28.3
Q ss_pred ccCccchhHHHhhhhcceEEeecCCccccccCCcc
Q 048142 312 CNDCHTATNIISKVYNRETVVMDRNRFHHFKNGSC 346 (352)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 346 (352)
+.+..+|.++-.++.+.+++-...++ |+|+++..
T Consensus 48 ~~sR~eAv~lgq~Ll~~gii~HV~~~-h~F~D~~~ 81 (85)
T cd04441 48 AESRREAVQLCRRLLEHGIIQHVSNK-HHFFDSNL 81 (85)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCC-CCccCCCe
Confidence 45678999999999999999888777 48988753
No 487
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=23.34 E-value=5.2e+02 Score=24.10 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHhCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 048142 163 LIKNMPMALD--HFVLGGLLGACRIHDNLEAAERAAQQLLELLPDN 206 (352)
Q Consensus 163 ~~~~m~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (352)
+|....++|. ..+..+-++.+.+++++..|-.+.+++++..|+.
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3444455554 3456667778889999999999999999876543
No 488
>PRK14700 recombination factor protein RarA; Provisional
Probab=23.34 E-value=5.2e+02 Score=22.79 Aligned_cols=31 Identities=10% Similarity=-0.094 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048142 22 LTGDKVTMVSLLLACTHLGALEVGMWLHPYIMK 54 (352)
Q Consensus 22 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 54 (352)
+..+......++.. ..||...|+..++.+..
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFL 93 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHh
Confidence 34566666666554 47788888888877553
No 489
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.29 E-value=5.3e+02 Score=22.92 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048142 11 LLLFREVQHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKK 55 (352)
Q Consensus 11 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 55 (352)
.++++.|...++.|.-.+|-=+.-.+++.=.+.....+++.+...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 467788888888887766654444566777888888888888754
No 490
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.19 E-value=1.4e+02 Score=20.36 Aligned_cols=31 Identities=10% Similarity=0.107 Sum_probs=25.0
Q ss_pred chHH-HHHHHHhhcCChHHHHHHHHHHHhcCC
Q 048142 208 GSYV-ILSNRYSSSRKWKKVKRIRELMAERNI 238 (352)
Q Consensus 208 ~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~ 238 (352)
.-|+ ++++.+.++.--++|+++++-|.++|-
T Consensus 31 ~gy~PtV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 31 SGYNPTVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred CCCCchHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 3444 678888888889999999999988775
No 491
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.67 E-value=7.6e+02 Score=24.45 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=52.2
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCc-cccccC--CcHHHHHHHHHHHHhcCChHHHHHHH
Q 048142 18 QHKGLTGDKVTMVSLLLACTHLGALEVGMWLHPYIMKKNIE-VDV-GLGMAL--KDVMTLTALIVVLAMCGQGNKALEYF 93 (352)
Q Consensus 18 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~-~~~~~l--~~~~~~~~li~~~~~~g~~~~A~~~~ 93 (352)
.+.|+..+......++.. ..|++..+..+++++...|-. .+. .+...+ .+......++.++.. |+...+++++
T Consensus 197 ~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l 273 (618)
T PRK14951 197 AAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETA 273 (618)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 456887777777766654 458999999988877655421 000 000000 333344455555554 7888888888
Q ss_pred HHHHHcCCCCC
Q 048142 94 YEMQIRGVKPD 104 (352)
Q Consensus 94 ~~m~~~g~~p~ 104 (352)
++|...|..|.
T Consensus 274 ~~l~~~G~~~~ 284 (618)
T PRK14951 274 DELRLNGLSAA 284 (618)
T ss_pred HHHHHcCCCHH
Confidence 88888877654
No 492
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=22.62 E-value=2.1e+02 Score=19.64 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=17.1
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048142 137 IRPSIEHYGCLVYILGRAGRIAKAEELIKNM 167 (352)
Q Consensus 137 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (352)
+.|+...||.+++.....+.+.-|..++.+.
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~ 42 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRI 42 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 4555556666666555555555555554443
No 493
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=22.44 E-value=1.1e+02 Score=19.71 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHHHHCCCCC
Q 048142 5 SACEEALLLFREVQHKGLTG 24 (352)
Q Consensus 5 g~~~~A~~~~~~m~~~g~~p 24 (352)
=+++.|+..|.++...|--|
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP 58 (63)
T smart00804 39 WDYERALKNFTELKSEGSIP 58 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCC
Confidence 37889999999998765444
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.32 E-value=1.9e+02 Score=20.85 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 118 AGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 118 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
.+..-.|.++++.+.++ +..++..|.--.++.+...|-
T Consensus 13 ~~~~~sa~ei~~~l~~~-~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 13 SDGHLTAEEIYERLRKK-GPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCC
Confidence 33334445555555443 333344333333444444443
No 495
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=22.12 E-value=67 Score=21.97 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=28.3
Q ss_pred ccCccchhHHHhhhhcceEEeecCCccccccCCc
Q 048142 312 CNDCHTATNIISKVYNRETVVMDRNRFHHFKNGS 345 (352)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 345 (352)
+.+..+|.++-..+.+.+++-....++.+|+++.
T Consensus 44 ~~sR~eAv~lgq~Ll~~gvi~HV~~~h~~F~D~~ 77 (82)
T cd04442 44 ASDRETAIKIMQKLLDHSIIHHVCDEHKEFKDAK 77 (82)
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCcCceeCCc
Confidence 4567899999999999999988777666788875
No 496
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=22.11 E-value=90 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=20.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048142 4 DSACEEALLLFREVQHKGLTGDKVTMV 30 (352)
Q Consensus 4 ~g~~~~A~~~~~~m~~~g~~p~~~t~~ 30 (352)
.|+...|.++++.++.+|+.|....|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 589999999999999999998776654
No 497
>PRK14135 recX recombination regulator RecX; Provisional
Probab=21.90 E-value=5e+02 Score=22.10 Aligned_cols=79 Identities=10% Similarity=0.078 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC-HHHHHHHHHh
Q 048142 88 KALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVDERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR-IAKAEELIKN 166 (352)
Q Consensus 88 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~ 166 (352)
.-.++-.++.+.|+.++... ..+..+...+..+.|..+.......+.-.|......-+...+.+.|- .+....++++
T Consensus 124 g~~~I~~kL~~kGi~~~~Ie--~~l~~l~~~~~~d~a~~~~~k~~~~~~~~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~ 201 (263)
T PRK14135 124 GPRVIKQKLLQKGIEDEIIE--EALSEYTEEDQIEVAQKLAEKLLKKYQKLPFKALKQKIIQSLLTKGFSYEVIKAALEE 201 (263)
T ss_pred chHHHHHHHHHcCCCHHHHH--HHHHhCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33456666667776555432 33444433444555555544433322212222233445555555553 3334555555
Q ss_pred CC
Q 048142 167 MP 168 (352)
Q Consensus 167 m~ 168 (352)
+.
T Consensus 202 ~~ 203 (263)
T PRK14135 202 LD 203 (263)
T ss_pred cc
Confidence 53
No 498
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=21.70 E-value=3.8e+02 Score=20.56 Aligned_cols=63 Identities=11% Similarity=-0.010 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHhhcC
Q 048142 156 RIAKAEELIKNMPMALDHFVLGGLLGACRIHDNLEAAERAAQQLLELLPDNGGSYVILSNRYSSSR 221 (352)
Q Consensus 156 ~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 221 (352)
.-+.|.++.+-|| .....-.........|++.-|.++.+.+....|.|...-....++|.+.|
T Consensus 56 p~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 56 PEEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3556777777775 23333345556677899999999999988888888777666666665544
No 499
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=21.63 E-value=9e+02 Score=24.94 Aligned_cols=199 Identities=13% Similarity=0.030 Sum_probs=113.5
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHc----CCCCCHhHHHHH
Q 048142 37 THLGALEVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVL-AMCGQGNKALEYFYEMQIR----GVKPDAITFVGV 111 (352)
Q Consensus 37 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l 111 (352)
....++.+|..+.+++...-..|+..... .-...|++|-... ...|++++|+++-+..... -..+..+.+..+
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~--~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQG--DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchh--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 56778999999999887643322211000 1224567664333 3578899999988877654 223445566677
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCChhHHH---HHH--HHHHHcCCH--HHHHHHHHhC-----CCC----CcHHH
Q 048142 112 LVACSHAGLVDERISHFNLMSEKYGIRPSIEHYG---CLV--YILGRAGRI--AKAEELIKNM-----PMA----LDHFV 175 (352)
Q Consensus 112 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~---~li--~~~~~~g~~--~~A~~~~~~m-----~~~----p~~~~ 175 (352)
..+..-.|++++|..+..+..+. .-.-+...+. .+. ..+...|.. .+.+..|... +-+ +-..+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 77777889999999888776653 2223333332 222 224456632 2333333332 111 22345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCc-c---hHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 048142 176 LGGLLGACRIHDNLEAAERAAQQLLE---LLPDNG-G---SYVILSNRYSSSRKWKKVKRIRELMAERNIKKP 241 (352)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~-~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 241 (352)
...++.++.+ .+.+..-...-.+ ...+.. . .+..|...+...|+.++|....+++......+.
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 5555555555 4444443333222 122221 1 223677888999999999999999886555554
No 500
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=21.42 E-value=3.3e+02 Score=19.85 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 048142 43 EVGMWLHPYIMKKNIEVDVGLGMALKDVMTLTALIVVLAMCGQGNKALEYFYEMQIRGVKPDAITFVGVLVACSHAGLVD 122 (352)
Q Consensus 43 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 122 (352)
+.+..+++.+.+.|+. .|..---..+....+.+ ......+-.++.+.|+.++... ..+ ......+
T Consensus 9 e~I~~vi~~l~~~gyi---------dD~~ya~~~v~~~~~~~-~~G~~~I~~~L~~kGi~~~~i~--~~l---~~~~~~e 73 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYI---------DDERYAESYVRSRLRRK-GKGPRRIRQKLKQKGIDREIIE--EAL---EEYDEEE 73 (121)
T ss_dssp HHHHHHHHHHHHTTSS----------HHHHHHHHHHHHHHHT-T--HHHHHHHHHHTT--HHHHH--HHH---TCS-HHH
T ss_pred HHHHHHHHHHHHcCCC---------CHHHHHHHHHHHhcccc-cccHHHHHHHHHHHCCChHHHH--HHH---HHhhHHH
Confidence 4566678888888876 44444455566555422 2345567778888887755432 222 2444455
Q ss_pred HHHHHHHHhhHhcCCCCChhHHHHHHHHHHHcCC
Q 048142 123 ERISHFNLMSEKYGIRPSIEHYGCLVYILGRAGR 156 (352)
Q Consensus 123 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 156 (352)
.|..+...-.....-.++.....-++..+.+.|-
T Consensus 74 ~a~~~~~kk~~~~~~~~~~~~~~K~~~~L~rrGF 107 (121)
T PF02631_consen 74 EALELAEKKYRRYRKPSDRKRKQKLIRFLMRRGF 107 (121)
T ss_dssp HHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC
Confidence 5666666665543345677778888888888774
Done!